Query 024013
Match_columns 274
No_of_seqs 188 out of 1457
Neff 6.0
Searched_HMMs 13730
Date Mon Mar 25 16:41:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024013.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024013hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q90m_ f.23.25.1 (M:) PetM su 40.8 25 0.0018 19.8 4.3 25 176-200 3-28 (34)
2 d1x3ca1 g.37.1.1 (A:8-68) Zinc 20.6 19 0.0014 22.9 1.4 14 24-37 12-25 (61)
3 d1sp1a_ g.37.1.1 (A:) Transcri 17.9 22 0.0016 19.5 1.2 14 9-22 2-15 (29)
4 d1eita_ g.3.6.2 (A:) mu-Agatox 16.5 8.7 0.00063 22.2 -0.9 11 11-21 23-33 (36)
5 d1x4ka1 g.39.1.3 (A:35-66) Fou 15.9 20 0.0014 20.4 0.6 14 10-23 3-18 (32)
6 d2pila_ d.24.1.1 (A:) Pilin Gc 15.1 1.6E+02 0.012 19.9 5.9 14 105-118 7-20 (158)
7 d1otsa_ f.20.1.1 (A:) Clc chlo 14.5 3.3E+02 0.024 22.9 9.6 14 190-203 411-424 (444)
8 d2adra1 g.37.1.1 (A:102-130) A 12.7 36 0.0026 18.5 1.1 13 9-21 2-14 (29)
9 d2osoa1 d.278.1.3 (A:5-156) Hy 12.5 37 0.0027 25.4 1.5 52 175-232 28-79 (152)
10 d1x6ea2 g.37.1.1 (A:41-66) Zin 11.4 29 0.0021 18.7 0.3 13 9-21 2-14 (26)
No 1
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=40.79 E-value=25 Score=19.83 Aligned_cols=25 Identities=24% Similarity=0.465 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHH
Q 024013 176 GSVTGTIIVSISGT-VAASVAFLIAR 200 (274)
Q Consensus 176 G~~~G~l~~~lG~~-lGa~i~F~IgR 200 (274)
|+..|+.+.++|.+ +|-.++|.+-|
T Consensus 3 ~fiagta~tmig~tl~glaigfvllr 28 (34)
T d1q90m_ 3 EFIAGTALTMVGMTLVGLAIGFVLLR 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceecchhHHHHHHHHHHHHHHHhhee
Confidence 45567777777776 57777777655
No 2
>d1x3ca1 g.37.1.1 (A:8-68) Zinc finger protein 292, ZNF292 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.64 E-value=19 Score=22.90 Aligned_cols=14 Identities=21% Similarity=0.446 Sum_probs=10.3
Q ss_pred CCCCcccccccccc
Q 024013 24 NSFIHSFKPHRRFH 37 (274)
Q Consensus 24 ~~~~~~~~~~~~~~ 37 (274)
|+.-++|||||+.|
T Consensus 12 pt~~spyrpyrcvh 25 (61)
T d1x3ca1 12 PTRYSPYRPYRCVH 25 (61)
T ss_dssp SSSSCSSCSCBCCS
T ss_pred ccccCCCCceeeec
Confidence 44556799999876
No 3
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.91 E-value=22 Score=19.47 Aligned_cols=14 Identities=29% Similarity=0.764 Sum_probs=11.3
Q ss_pred ccccCCCCCcccCC
Q 024013 9 QYHCHQPPSCFLTS 22 (274)
Q Consensus 9 ~~~~~~~~~~~~~~ 22 (274)
.|.|..+.++|--+
T Consensus 2 py~C~~C~k~F~~~ 15 (29)
T d1sp1a_ 2 KFACPECPKRFMRS 15 (29)
T ss_dssp CSCCTTTTCCCSCS
T ss_pred CEECCcCCCeecch
Confidence 48999999999643
No 4
>d1eita_ g.3.6.2 (A:) mu-Agatoxin-I {Funnel web spider (Agelenopsis aperta) [TaxId: 6908]}
Probab=16.48 E-value=8.7 Score=22.19 Aligned_cols=11 Identities=45% Similarity=1.232 Sum_probs=8.9
Q ss_pred ccCCCCCcccC
Q 024013 11 HCHQPPSCFLT 21 (274)
Q Consensus 11 ~~~~~~~~~~~ 21 (274)
.|.|||+|.|.
T Consensus 23 ~c~qpp~cicr 33 (36)
T d1eita_ 23 SCRQPPKCICR 33 (36)
T ss_dssp EEEETTEEEEE
T ss_pred cCCCCCeeeec
Confidence 47899999874
No 5
>d1x4ka1 g.39.1.3 (A:35-66) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.91 E-value=20 Score=20.43 Aligned_cols=14 Identities=29% Similarity=0.766 Sum_probs=9.5
Q ss_pred cccCCC--CCcccCCC
Q 024013 10 YHCHQP--PSCFLTSS 23 (274)
Q Consensus 10 ~~~~~~--~~~~~~~~ 23 (274)
++|.|| +++|.|+.
T Consensus 3 ~~C~qPIGtksfipk~ 18 (32)
T d1x4ka1 3 HRCQQPIGTKSFIPKD 18 (32)
T ss_dssp SSSCCCCCSSSEEEET
T ss_pred ccccCcccccccccCC
Confidence 467777 67777654
No 6
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=15.09 E-value=1.6e+02 Score=19.94 Aligned_cols=14 Identities=0% Similarity=0.202 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHH
Q 024013 105 LAGVLLLVVVGGFG 118 (274)
Q Consensus 105 l~~v~lv~~v~~l~ 118 (274)
+.++++++++++++
T Consensus 7 lVViaIIgILaaia 20 (158)
T d2pila_ 7 MIVIAIVGILAAVA 20 (158)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44455555555444
No 7
>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]}
Probab=14.45 E-value=3.3e+02 Score=22.86 Aligned_cols=14 Identities=21% Similarity=0.313 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHh
Q 024013 190 VAASVAFLIARYFA 203 (274)
Q Consensus 190 lGa~i~F~IgR~lG 203 (274)
+++.++|+++|.++
T Consensus 411 ia~~~a~~v~~~~~ 424 (444)
T d1otsa_ 411 ITGLGATLLAQFTG 424 (444)
T ss_dssp HHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhC
Confidence 34555555555554
No 8
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}
Probab=12.74 E-value=36 Score=18.49 Aligned_cols=13 Identities=15% Similarity=0.426 Sum_probs=10.3
Q ss_pred ccccCCCCCcccC
Q 024013 9 QYHCHQPPSCFLT 21 (274)
Q Consensus 9 ~~~~~~~~~~~~~ 21 (274)
.|.|..+.++|--
T Consensus 2 p~~C~~C~k~F~~ 14 (29)
T d2adra1 2 SFVCEVCTRAFAR 14 (29)
T ss_dssp CBCCTTTCCCBSC
T ss_pred cCCCCCCCCCCCC
Confidence 3889999998853
No 9
>d2osoa1 d.278.1.3 (A:5-156) Hypothetical protein MJ1460 {Methanococcus jannaschii [TaxId: 2190]}
Probab=12.48 E-value=37 Score=25.38 Aligned_cols=52 Identities=15% Similarity=0.148 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCcHHHHHHHHHHhhcchHhh
Q 024013 175 FGSVTGTIIVSISGTVAASVAFLIARYFARERILKLVEGNKKFLAIDKAIGENGFRVV 232 (274)
Q Consensus 175 FG~~~G~l~~~lG~~lGa~i~F~IgR~lGr~~v~~~l~~~~kl~ri~~~l~r~G~~~V 232 (274)
|+.+.-.+.--++..-...+.|++|+.+|+..-. +.++.+.+.++++||-.+
T Consensus 28 f~l~~~~l~d~l~~~~~~~iLY~aGk~lGr~~~~------k~~eel~~ff~~~g~G~L 79 (152)
T d2osoa1 28 FGLFALVIFDKVKELGSETSLYEIGEEFGKMLSP------KNIEELKKIFKLMNFGDL 79 (152)
T ss_dssp HHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHCC------SSHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHcCCceE
Confidence 4444433444455555577889999999876432 246677778888877433
No 10
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.38 E-value=29 Score=18.71 Aligned_cols=13 Identities=23% Similarity=0.521 Sum_probs=10.8
Q ss_pred ccccCCCCCcccC
Q 024013 9 QYHCHQPPSCFLT 21 (274)
Q Consensus 9 ~~~~~~~~~~~~~ 21 (274)
.|.|..+.|+|.-
T Consensus 2 Py~C~eCgK~F~~ 14 (26)
T d1x6ea2 2 PYKCLECGKAFSQ 14 (26)
T ss_dssp CEECSSSCCEESS
T ss_pred CccCCCCcCeecc
Confidence 3889999999964
Done!