BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024014
(274 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q945M9|NFYA9_ARATH Nuclear transcription factor Y subunit A-9 OS=Arabidopsis thaliana
GN=NFYA9 PE=2 SV=1
Length = 303
Score = 224 bits (571), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 135/262 (51%), Positives = 158/262 (60%), Gaps = 53/262 (20%)
Query: 18 AGNHGQKNQNVQQGASAMPTIRDECFTQPPQLELVGHSIACAS-NPYQDPYYGGMMAAYG 76
AG++ KNQ P PP +LVGH++ AS NPYQDPYY G+M AYG
Sbjct: 90 AGDYSDKNQESLHHGITQP---------PPHPQLVGHTVGWASSNPYQDPYYAGVMGAYG 140
Query: 77 HQPVGYPQFVGMPHARMPLPLEMAQEPVYVNAKQYMGILRRRQARAKAELEKKLIKVRKP 136
H P+G+ + GMPH+RMPLP EMAQEPV+VNAKQY ILRRRQARAKAELEKKLIK RKP
Sbjct: 141 HHPLGFVPYGGMPHSRMPLPPEMAQEPVFVNAKQYQAILRRRQARAKAELEKKLIKSRKP 200
Query: 137 YLHESRHQHAMRRARGSGGRFAKKTD-DASKGNSEKKGGGSGIRPSLSGSSSGSEPVPSD 195
YLHESRHQHAMRR RG+GGRFAKKT+ +ASK +E+K G + S SSS SD
Sbjct: 201 YLHESRHQHAMRRPRGTGGRFAKKTNTEASKRKAEEKSNGHVTQ---SPSSSN-----SD 252
Query: 196 SAETWNSSASQQDVGGSQAHNMHEARNHANANGGY---QNHGLQASTYHSHLGDRGETGD 252
E W NG Y Q +Q+S Y R E G+
Sbjct: 253 QGEAW--------------------------NGDYRTPQGDEMQSSAY-----KRREEGE 281
Query: 253 CSGKQWGSISSNQASQRPLAIQ 274
CSG+QW S+SSN SQ LAI+
Sbjct: 282 CSGQQWNSLSSNHPSQARLAIK 303
>sp|Q9LXV5|NFYA1_ARATH Nuclear transcription factor Y subunit A-1 OS=Arabidopsis thaliana
GN=NFYA1 PE=2 SV=1
Length = 272
Score = 209 bits (532), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 112/186 (60%), Positives = 136/186 (73%), Gaps = 9/186 (4%)
Query: 20 NHGQKNQNVQQGASAMPTIRDECFTQPPQLELVGHSIACASNPYQDPYYGGMMAAYGHQP 79
NHG + + A ++ + D+ QPP ELVGH IAC NPYQDPYYGG+M AYGHQ
Sbjct: 95 NHGMEGNDP---ALSIRNMHDQPLVQPP--ELVGHYIACVPNPYQDPYYGGLMGAYGHQQ 149
Query: 80 VGYPQFVGMPHARMPLPLEMAQEPVYVNAKQYMGILRRRQARAKAELEKKLIKVRKPYLH 139
+G+ ++GMP R LPL+MAQEPVYVNAKQY GILRRR+ARAKAELE+K+I+ RKPYLH
Sbjct: 150 LGFRPYLGMPRERTALPLDMAQEPVYVNAKQYEGILRRRKARAKAELERKVIRDRKPYLH 209
Query: 140 ESRHQHAMRRARGSGGRFAKKTDDASKGNSEKKGGGSGIRPSLSGSSSGSEPVPSDSAET 199
ESRH+HAMRRAR SGGRFAKK++ + E GG R S + +SSGSE V +DS ET
Sbjct: 210 ESRHKHAMRRARASGGRFAKKSEVEA---GEDAGGRDRERGSAT-NSSGSEQVETDSNET 265
Query: 200 WNSSAS 205
NSS +
Sbjct: 266 LNSSGA 271
>sp|Q93ZH2|NFYA3_ARATH Nuclear transcription factor Y subunit A-3 OS=Arabidopsis thaliana
GN=NFYA3 PE=2 SV=2
Length = 340
Score = 120 bits (302), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 58/98 (59%), Positives = 71/98 (72%), Gaps = 3/98 (3%)
Query: 63 YQDPYYGGMMAA--YGHQPVGYPQFVGMPHARMPLPLEMAQ-EPVYVNAKQYMGILRRRQ 119
Y DP+YGG++AA P PQ V M R+PLP E+ + +PV+VNAKQY I+RRRQ
Sbjct: 137 YADPHYGGLLAATYLPQAPTCNPQMVSMIPGRVPLPAELTETDPVFVNAKQYHAIMRRRQ 196
Query: 120 ARAKAELEKKLIKVRKPYLHESRHQHAMRRARGSGGRF 157
RAK E + KLI+ RKPYLHESRH HA++R RGSGGRF
Sbjct: 197 QRAKLEAQNKLIRARKPYLHESRHVHALKRPRGSGGRF 234
>sp|Q84JP1|NFYA7_ARATH Nuclear transcription factor Y subunit A-7 OS=Arabidopsis thaliana
GN=NFYA7 PE=2 SV=1
Length = 190
Score = 117 bits (293), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 68/139 (48%), Positives = 90/139 (64%), Gaps = 4/139 (2%)
Query: 55 SIACASNPYQDPYYGGMMAAYGHQPVG-YPQFVGMPHARMPLPLEMAQEPVYVNAKQYMG 113
S+A PY DPYY + A G + Q +G+ +PLP + +EPV+VNAKQY G
Sbjct: 52 SMAPGQYPYPDPYYRSIFAPPPQPYTGVHLQLMGVQQQGVPLPSDAVEEPVFVNAKQYHG 111
Query: 114 ILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGSGGRF--AKKTDDASKGNS-E 170
ILRRRQ+RA+ E + K+IK RKPYLHESRH HA+RR RG GGRF AKK D+ + +S E
Sbjct: 112 ILRRRQSRARLESQNKVIKSRKPYLHESRHLHAIRRPRGCGGRFLNAKKEDEHHEDSSHE 171
Query: 171 KKGGGSGIRPSLSGSSSGS 189
+K S + +++ SS S
Sbjct: 172 EKSNLSAGKSAMAASSGTS 190
>sp|Q8VY64|NFYA4_ARATH Nuclear transcription factor Y subunit A-4 OS=Arabidopsis thaliana
GN=NFYA4 PE=2 SV=1
Length = 198
Score = 114 bits (284), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 60/115 (52%), Positives = 73/115 (63%), Gaps = 6/115 (5%)
Query: 62 PYQDPYYGGMMAAYGHQPVGYP----QFVGMPHARMPLPLEMAQEPVYVNAKQYMGILRR 117
PY DPYY + A + P YP Q +GM +PL + +EPV+VNAKQY GILRR
Sbjct: 54 PYPDPYYRSVFAQQAYLPHPYPGVQLQLMGMQQPGVPLQCDAVEEPVFVNAKQYHGILRR 113
Query: 118 RQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGSGGRF--AKKTDDASKGNSE 170
RQ+RAK E + IK +KPY+HESRH HA+RR RG GGRF AKK + K E
Sbjct: 114 RQSRAKLEARNRAIKAKKPYMHESRHLHAIRRPRGCGGRFLNAKKENGDHKEEEE 168
>sp|Q9LNP6|NFYA8_ARATH Nuclear transcription factor Y subunit A-8 OS=Arabidopsis thaliana
GN=NFYA8 PE=2 SV=2
Length = 328
Score = 113 bits (283), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 57/98 (58%), Positives = 71/98 (72%), Gaps = 8/98 (8%)
Query: 63 YQDPYYGGMM-AAYGHQPVGY-PQFVGMPHARMPLPLEMAQ-EPVYVNAKQYMGILRRRQ 119
Y DP++GG+M AAY Q + PQ R+PLP ++ + EPV+VNAKQ+ I+RRRQ
Sbjct: 135 YADPHFGGLMPAAYLPQATIWNPQM-----TRVPLPFDLIENEPVFVNAKQFHAIMRRRQ 189
Query: 120 ARAKAELEKKLIKVRKPYLHESRHQHAMRRARGSGGRF 157
RAK E + KLIK RKPYLHESRH HA++R RGSGGRF
Sbjct: 190 QRAKLEAQNKLIKARKPYLHESRHVHALKRPRGSGGRF 227
>sp|Q9LVJ7|NFYA6_ARATH Nuclear transcription factor Y subunit A-6 OS=Arabidopsis thaliana
GN=NFYA6 PE=2 SV=1
Length = 308
Score = 112 bits (279), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 59/108 (54%), Positives = 74/108 (68%), Gaps = 6/108 (5%)
Query: 56 IACASNPYQ---DPYYGGMMAA-YGHQ-PVGYPQFVGMPHARMPLPLEMAQ-EPVYVNAK 109
I AS P P++ G ++ Y Q V +PQ G+ +RMPLP + + EP++VNAK
Sbjct: 119 IEAASWPLHGNVTPHFNGFLSFPYASQHTVQHPQIRGLVPSRMPLPHNIPENEPIFVNAK 178
Query: 110 QYMGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGSGGRF 157
QY ILRRR+ RAK E + KLIKVRKPYLHESRH HA++R RGSGGRF
Sbjct: 179 QYQAILRRRERRAKLEAQNKLIKVRKPYLHESRHLHALKRVRGSGGRF 226
>sp|Q9SYH4|NFYA5_ARATH Nuclear transcription factor Y subunit A-5 OS=Arabidopsis thaliana
GN=NFYA5 PE=2 SV=1
Length = 308
Score = 112 bits (279), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 62/152 (40%), Positives = 89/152 (58%), Gaps = 10/152 (6%)
Query: 20 NHGQKNQNVQQGASAMPTIRDECFTQPPQLELVGHSIACASNPYQDPYYGGMMA-AYGHQ 78
N G+ +N + + + + P + S+ CA + ++ G +A Y
Sbjct: 96 NLGKPIENYTKSITTSSMVSQDSVFPAPTSGQISWSLQCA----ETSHFNGFLAPEYAST 151
Query: 79 PVGYP--QFVGMPHARMPLPLEMAQ-EPVYVNAKQYMGILRRRQARAKAELEKKLIKVRK 135
P P + +G+ +R+PLP + + EP++VNAKQY ILRRR+ RAK E + KLIK RK
Sbjct: 152 PTALPHLEMMGLVSSRVPLPHHIQENEPIFVNAKQYHAILRRRKHRAKLEAQNKLIKCRK 211
Query: 136 PYLHESRHQHAMRRARGSGGRF--AKKTDDAS 165
PYLHESRH HA++RARGSGGRF KK ++S
Sbjct: 212 PYLHESRHLHALKRARGSGGRFLNTKKLQESS 243
>sp|Q8LFU0|NFYAA_ARATH Nuclear transcription factor Y subunit A-10 OS=Arabidopsis thaliana
GN=NFYA10 PE=2 SV=2
Length = 269
Score = 97.4 bits (241), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 65/146 (44%), Positives = 86/146 (58%), Gaps = 21/146 (14%)
Query: 62 PYQDPYYGGMMAAYGHQPVGYPQFVGMPHARMPLPLEMAQE---PVYVNAKQYMGILRRR 118
P+ + YYG +++AYG Q R+ +PL+M E +YVN+KQY GI+RRR
Sbjct: 101 PHVEQYYG-VVSAYGSQ---------RSSGRVMIPLKMETEEDGTIYVNSKQYHGIIRRR 150
Query: 119 QARAKAELEKKLIKVRKPYLHESRHQHAMRRARGSGGRFA-KKTDDASKGNSEKKGGGSG 177
Q+RAKAE KL + RKPY+H SRH HAMRR RGSGGRF KT DA+K + S
Sbjct: 151 QSRAKAE---KLSRCRKPYMHHSRHLHAMRRPRGSGGRFLNTKTADAAKQSKPSNSQSSE 207
Query: 178 I----RPSLSGSSSGSEPVPSDSAET 199
+ +++ S +E SDSA T
Sbjct: 208 VFHPENETINSSREANESNLSDSAVT 233
>sp|Q9M9X4|NFYA2_ARATH Nuclear transcription factor Y subunit A-2 OS=Arabidopsis thaliana
GN=NFYA2 PE=2 SV=1
Length = 295
Score = 96.3 bits (238), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/142 (43%), Positives = 82/142 (57%), Gaps = 29/142 (20%)
Query: 43 FTQPPQLELVGHSIACASNPYQDPYYGGMMAAYGHQPVGYPQFVGMPHARMPLPLEMAQE 102
F+QPP PY + Y G+++AYG Q +R+ LPL M E
Sbjct: 96 FSQPP---------IYTKYPYGEQQYYGVVSAYGSQ------------SRVMLPLNMETE 134
Query: 103 --PVYVNAKQYMGILRRRQARAKAE--LEKKLI--KVRKPYLHESRHQHAMRRARGSGGR 156
+YVN+KQY GI+RRRQ+RAKA L++K + + RKPY+H SRH HA+RR RGSGGR
Sbjct: 135 DSTIYVNSKQYHGIIRRRQSRAKAAAVLDQKKLSSRCRKPYMHHSRHLHALRRPRGSGGR 194
Query: 157 F--AKKTDDASKGNSEKKGGGS 176
F K + + G + KKG GS
Sbjct: 195 FLNTKSQNLENSGTNAKKGDGS 216
>sp|Q54S29|NFYA_DICDI Nuclear transcription factor Y subunit alpha OS=Dictyostelium
discoideum GN=nfyA PE=3 SV=1
Length = 517
Score = 95.1 bits (235), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 49/77 (63%), Positives = 55/77 (71%), Gaps = 3/77 (3%)
Query: 88 MPHARMPLPLEMAQEPVYVNAKQYMGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAM 147
M +ARM E+ +EP+YVNAKQY IL+RR ARAK E E KL K RK Y HESRHQHA+
Sbjct: 218 MLYARMA---EIVEEPLYVNAKQYNRILKRRAARAKLESENKLPKTRKAYQHESRHQHAI 274
Query: 148 RRARGSGGRFAKKTDDA 164
RR RG GGRF K D A
Sbjct: 275 RRQRGCGGRFLTKADQA 291
>sp|P23708|NFYA_MOUSE Nuclear transcription factor Y subunit alpha OS=Mus musculus
GN=Nfya PE=1 SV=2
Length = 346
Score = 89.4 bits (220), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/68 (67%), Positives = 53/68 (77%), Gaps = 2/68 (2%)
Query: 92 RMPLP-LEMAQE-PVYVNAKQYMGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRR 149
R+PLP EM +E P+YVNAKQY IL+RRQARAK E E K+ K R+ YLHESRH+HAM R
Sbjct: 250 RIPLPGAEMLEEEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYLHESRHRHAMAR 309
Query: 150 ARGSGGRF 157
RG GGRF
Sbjct: 310 KRGEGGRF 317
>sp|P23511|NFYA_HUMAN Nuclear transcription factor Y subunit alpha OS=Homo sapiens
GN=NFYA PE=1 SV=2
Length = 347
Score = 89.4 bits (220), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/68 (67%), Positives = 53/68 (77%), Gaps = 2/68 (2%)
Query: 92 RMPLP-LEMAQE-PVYVNAKQYMGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRR 149
R+PLP EM +E P+YVNAKQY IL+RRQARAK E E K+ K R+ YLHESRH+HAM R
Sbjct: 251 RIPLPGAEMLEEEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYLHESRHRHAMAR 310
Query: 150 ARGSGGRF 157
RG GGRF
Sbjct: 311 KRGEGGRF 318
>sp|P18576|NFYA_RAT Nuclear transcription factor Y subunit alpha OS=Rattus norvegicus
GN=Nfya PE=1 SV=1
Length = 341
Score = 89.4 bits (220), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/68 (67%), Positives = 53/68 (77%), Gaps = 2/68 (2%)
Query: 92 RMPLP-LEMAQE-PVYVNAKQYMGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRR 149
R+PLP EM +E P+YVNAKQY IL+RRQARAK E E K+ K R+ YLHESRH+HAM R
Sbjct: 245 RIPLPGAEMLEEEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYLHESRHRHAMAR 304
Query: 150 ARGSGGRF 157
RG GGRF
Sbjct: 305 KRGEGGRF 312
>sp|Q5E9S2|NFYA_BOVIN Nuclear transcription factor Y subunit alpha OS=Bos taurus GN=NFYA
PE=2 SV=1
Length = 341
Score = 89.4 bits (220), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/68 (67%), Positives = 53/68 (77%), Gaps = 2/68 (2%)
Query: 92 RMPLP-LEMAQE-PVYVNAKQYMGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRR 149
R+PLP EM +E P+YVNAKQY IL+RRQARAK E E K+ K R+ YLHESRH+HAM R
Sbjct: 245 RIPLPGAEMLEEEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYLHESRHRHAMAR 304
Query: 150 ARGSGGRF 157
RG GGRF
Sbjct: 305 KRGEGGRF 312
>sp|P06774|HAP2_YEAST Transcriptional activator HAP2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=HAP2 PE=1 SV=1
Length = 265
Score = 88.2 bits (217), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 45/79 (56%), Positives = 54/79 (68%), Gaps = 2/79 (2%)
Query: 99 MAQEPVYVNAKQYMGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGSGGRFA 158
+A++P YVNAKQY IL+RR ARAK E + ++ + RKPYLHESRH+HAMRR RG GGRF
Sbjct: 156 IAEQPFYVNAKQYYRILKRRYARAKLEEKLRISRERKPYLHESRHKHAMRRPRGEGGRFL 215
Query: 159 KKTDDASKGNSEKKGGGSG 177
T K KK G S
Sbjct: 216 --TAAEIKAMKSKKSGASD 232
>sp|P53768|HAP2_KLULA Transcriptional activator HAP2 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=HAP2 PE=3 SV=1
Length = 300
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 54/82 (65%)
Query: 96 PLEMAQEPVYVNAKQYMGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGSGG 155
P E ++P YVNAKQY IL+RR ARAK E K+ + R+PYLHESRH+HAMRR RG GG
Sbjct: 179 PSEPLEQPFYVNAKQYYRILKRRYARAKLEENLKISRERRPYLHESRHKHAMRRPRGQGG 238
Query: 156 RFAKKTDDASKGNSEKKGGGSG 177
RF + A E++G +
Sbjct: 239 RFLTAAEMAEMKRKEEEGTDND 260
>sp|P24488|HAP2_SCHPO Transcriptional activator hap2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=hap2 PE=3 SV=1
Length = 334
Score = 79.3 bits (194), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/62 (67%), Positives = 48/62 (77%), Gaps = 8/62 (12%)
Query: 102 EPV---YVNAKQYMGILRRRQARAKAELEKKLIKV---RKPYLHESRHQHAMRRARGSGG 155
EPV YVNAKQY IL+RR+ARAK LE++L V +KPYLHESRH+HAMRR RG GG
Sbjct: 5 EPVEGLYVNAKQYHRILKRREARAK--LEERLRGVQTTKKPYLHESRHKHAMRRPRGPGG 62
Query: 156 RF 157
RF
Sbjct: 63 RF 64
>sp|O00468|AGRIN_HUMAN Agrin OS=Homo sapiens GN=AGRN PE=1 SV=5
Length = 2067
Score = 33.1 bits (74), Expect = 2.3, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 26/54 (48%)
Query: 150 ARGSGGRFAKKTDDASKGNSEKKGGGSGIRPSLSGSSSGSEPVPSDSAETWNSS 203
A G G +D+ G+ E GGGSG L GSS + P + A +NS+
Sbjct: 1056 AFGESGSTDGSSDEELSGDQEASGGGSGGLEPLEGSSVATPGPPVERASCYNSA 1109
>sp|O36395|UNG_ALHV1 Uracil-DNA glycosylase OS=Alcelaphine herpesvirus 1 (strain C500)
GN=46 PE=3 SV=1
Length = 252
Score = 32.3 bits (72), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 6/51 (11%)
Query: 26 QNVQQGASAMPTIRDECFTQPPQLELVGHSIACASNPY------QDPYYGG 70
Q + S + +R C PPQ E++ S CA QDPY+GG
Sbjct: 42 QKLYNTLSKINEMRKSCIIYPPQAEIMSWSYLCAPEDVKVVIIGQDPYHGG 92
>sp|Q5Z048|SYV_NOCFA Valine--tRNA ligase OS=Nocardia farcinica (strain IFM 10152)
GN=valS PE=3 SV=1
Length = 893
Score = 32.3 bits (72), Expect = 4.1, Method: Composition-based stats.
Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 9/99 (9%)
Query: 51 LVGHSIACASNPYQDPYYG--GMMAAYGHQPVGYPQFVGMPHARMPLPLEMAQEPVYVNA 108
+ G I ++ Y DP +G + H P + +G+ H +P+P M + N
Sbjct: 263 ITGRQIPIVADDYVDPEFGSGAVKITPAHDPNDFE--IGLRH-NLPMPTIMDERGRIANT 319
Query: 109 KQYMGILRRRQARAKAE----LEKKLIKVRKPYLHESRH 143
+ R +AR K E +++ ++PY+H H
Sbjct: 320 GTEFDGMDRFEARVKVRERLAREGRVVAEKRPYIHSVGH 358
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.127 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110,963,795
Number of Sequences: 539616
Number of extensions: 4913547
Number of successful extensions: 13645
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 133
Number of HSP's that attempted gapping in prelim test: 12795
Number of HSP's gapped (non-prelim): 733
length of query: 274
length of database: 191,569,459
effective HSP length: 116
effective length of query: 158
effective length of database: 128,974,003
effective search space: 20377892474
effective search space used: 20377892474
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)