Query 024014
Match_columns 274
No_of_seqs 144 out of 217
Neff 2.8
Searched_HMMs 46136
Date Fri Mar 29 08:17:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024014.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024014hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1561 CCAAT-binding factor, 100.0 1.2E-42 2.6E-47 321.0 12.6 113 50-162 124-244 (307)
2 smart00521 CBF CCAAT-Binding t 100.0 8.1E-37 1.8E-41 228.2 6.0 62 99-160 1-62 (62)
3 PF02045 CBFB_NFYA: CCAAT-bind 100.0 1E-34 2.3E-39 214.5 4.4 57 101-157 1-58 (58)
4 COG5224 HAP2 CCAAT-binding fac 99.8 4.1E-20 8.9E-25 166.5 3.8 61 100-162 157-217 (248)
5 PF06203 CCT: CCT motif; Inte 71.2 6.7 0.00014 28.3 3.6 28 134-162 18-45 (45)
6 KOG1561 CCAAT-binding factor, 31.7 32 0.00069 33.2 2.1 41 114-159 14-54 (307)
7 PF08331 DUF1730: Domain of un 23.2 1.2E+02 0.0026 22.8 3.5 26 105-130 42-67 (78)
8 PF15046 DUF4532: Protein of u 21.7 1E+02 0.0022 29.8 3.4 23 100-122 131-153 (279)
9 cd01183 INT_SG1_C INT_SG1, DNA 13.8 4.1E+02 0.0089 21.6 4.8 44 108-151 123-171 (196)
10 KOG2796 Uncharacterized conser 13.3 2.3E+02 0.0051 28.2 3.8 42 100-141 283-324 (366)
No 1
>KOG1561 consensus CCAAT-binding factor, subunit B (HAP2) [Transcription]
Probab=100.00 E-value=1.2e-42 Score=320.96 Aligned_cols=113 Identities=54% Similarity=0.827 Sum_probs=104.0
Q ss_pred cccCccccccC-CCCCCCCcccccc---ccCCCCCC--CCcccCCCC-CCCCCCcCCCC-CCeeechhhhhHHHHHHHHH
Q 024014 50 ELVGHSIACAS-NPYQDPYYGGMMA---AYGHQPVG--YPQFVGMPH-ARMPLPLEMAQ-EPVYVNAKQYMGILRRRQAR 121 (274)
Q Consensus 50 el~g~s~a~~~-~py~Dpyygg~~a---aYg~q~~~--~p~~~G~~~-aR~pLP~e~~e-ePvyVNaKQY~rIlrRRq~R 121 (274)
+.+.+..++++ +||.+|+|+|++. +|++|+.. .+++.||.+ .|+|||.++.| ||||||||||+||||||++|
T Consensus 124 ~a~~~~~~~~s~~~~~~p~~~g~~~~~~~y~~~~~~~~~~q~~g~~~~~r~pLP~~~~e~ePl~VNaKQY~~IlrRRq~R 203 (307)
T KOG1561|consen 124 TASMSPANNTSGNPITSPHYRGVLDMSGAYSGQPTNTASTQYSGPVPHDRTPLPQTDSETEPLYVNAKQYHRILRRRQAR 203 (307)
T ss_pred ccccccccccccCCCCCCcccceecccccccCCCCccccccccCCCCcCcccCCccccCCCceeEcHHHHHHHHHHHHHH
Confidence 44667666665 7999999999999 89999885 678899988 99999999866 99999999999999999999
Q ss_pred HHHHHhhhhhhcCCCcchhchhHHHhhcCCCCCCcccccCC
Q 024014 122 AKAELEKKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKTD 162 (274)
Q Consensus 122 aK~e~e~kl~k~rk~YlHESRH~HAm~R~RG~gGRFl~k~e 162 (274)
||||+++||+|.||||||||||+|||||+||+|||||+++|
T Consensus 204 aKlEa~~klik~RkpYLHESRH~HAmkR~RG~GGRFln~k~ 244 (307)
T KOG1561|consen 204 AKLEATTKLIKARKPYLHESRHLHAMKRARGEGGRFLNTKE 244 (307)
T ss_pred hhhhhcccchhhcCccccchhhHHHhhcccCCCCCCCchhh
Confidence 99999999999999999999999999999999999999988
No 2
>smart00521 CBF CCAAT-Binding transcription Factor.
Probab=100.00 E-value=8.1e-37 Score=228.16 Aligned_cols=62 Identities=74% Similarity=1.065 Sum_probs=60.1
Q ss_pred CCCCCeeechhhhhHHHHHHHHHHHHHHhhhhhhcCCCcchhchhHHHhhcCCCCCCccccc
Q 024014 99 MAQEPVYVNAKQYMGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGSGGRFAKK 160 (274)
Q Consensus 99 ~~eePvyVNaKQY~rIlrRRq~RaK~e~e~kl~k~rk~YlHESRH~HAm~R~RG~gGRFl~k 160 (274)
++++|||||||||++|||||++|||+|+++++++.||||||||||+|||+|+||+|||||++
T Consensus 1 ~~~~piyVNaKQy~~IlrRR~~Rak~e~~~kl~~~rkpYlhESRH~HAm~R~Rg~gGRFl~~ 62 (62)
T smart00521 1 AEEEPVYVNAKQYHRILRRRQARAKLEAQGKLPKERKPYLHESRHLHAMRRPRGSGGRFLNT 62 (62)
T ss_pred CCCcceeEcHHHHHHHHHHHHHHHHHHHhcchhhccCCcccchhHHHHHccCcCCCCCCCCC
Confidence 46899999999999999999999999999999999999999999999999999999999985
No 3
>PF02045 CBFB_NFYA: CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B; InterPro: IPR001289 The CCAAT-binding factor (CBFB/NF-YA) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin []. The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding []. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The B subunit contains a region of similarity with the yeast protein HAP2 []. For the B subunit it has been suggested that the N-terminal portion of the conserved region is involved in subunit interaction and the C-terminal region involved in DNA-binding [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=100.00 E-value=1e-34 Score=214.54 Aligned_cols=57 Identities=79% Similarity=1.182 Sum_probs=56.2
Q ss_pred CCCeeechhhhhHHHHHHHHHHHHHHhhhh-hhcCCCcchhchhHHHhhcCCCCCCcc
Q 024014 101 QEPVYVNAKQYMGILRRRQARAKAELEKKL-IKVRKPYLHESRHQHAMRRARGSGGRF 157 (274)
Q Consensus 101 eePvyVNaKQY~rIlrRRq~RaK~e~e~kl-~k~rk~YlHESRH~HAm~R~RG~gGRF 157 (274)
|+|||||||||++|||||++|||+|+++++ ++.||||||||||+|||+|+||+||||
T Consensus 1 ~~piyVNaKQY~rIlrRR~~Rakle~~~k~~~~~rk~YlheSRH~HA~~R~Rg~gGRF 58 (58)
T PF02045_consen 1 EEPIYVNAKQYHRILRRRQARAKLEAEGKLSPKKRKPYLHESRHKHAMRRPRGPGGRF 58 (58)
T ss_pred CCCeeECHHHHHHHHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHcCccCCCCCC
Confidence 689999999999999999999999999999 999999999999999999999999999
No 4
>COG5224 HAP2 CCAAT-binding factor, subunit B [Transcription]
Probab=99.79 E-value=4.1e-20 Score=166.53 Aligned_cols=61 Identities=43% Similarity=0.551 Sum_probs=55.8
Q ss_pred CCCCeeechhhhhHHHHHHHHHHHHHHhhhhhhcCCCcchhchhHHHhhcCCCCCCcccccCC
Q 024014 100 AQEPVYVNAKQYMGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKTD 162 (274)
Q Consensus 100 ~eePvyVNaKQY~rIlrRRq~RaK~e~e~kl~k~rk~YlHESRH~HAm~R~RG~gGRFl~k~e 162 (274)
.++|.|||+|||++|++||-+|++++. +++-.|..|||||||+|||+|+|+++||||+++|
T Consensus 157 sfqp~Yvnakq~n~i~kr~~~r~~ld~--~~~~~r~~ylHesrhkham~r~r~ptgrfLtasE 217 (248)
T COG5224 157 SFQPDYVNAKQGNEISKRPGLRVYLDD--SVSAGRAFYLHESRHKHAMLRVRDPTGRFLTASE 217 (248)
T ss_pred ccCcchhhhhhhhHHhcchhHHHHHHH--HhhhhhhhccccchhhhhhhcccCCCcceecHHh
Confidence 578999999999999999999999865 4566677799999999999999999999999998
No 5
>PF06203 CCT: CCT motif; InterPro: IPR010402 The CCT (CONSTANS, CO-like, and TOC1) domain is a highly conserved basic module of ~43 amino acids, which is found near the C terminus of plant proteins often involved in light signal transduction. The CCT domain is found in association with other domains, such as the B-box zinc finger, the GATA-type zinc finger, the ZIM motif or the response regulatory domain. The CCT domain contains a putative nuclear localisation signal within the second half of the CCT motif and has been shown to be involved in nuclear localization and probably also has a role in protein-protein interaction [].; GO: 0005515 protein binding
Probab=71.18 E-value=6.7 Score=28.31 Aligned_cols=28 Identities=43% Similarity=0.529 Sum_probs=23.6
Q ss_pred CCCcchhchhHHHhhcCCCCCCcccccCC
Q 024014 134 RKPYLHESRHQHAMRRARGSGGRFAKKTD 162 (274)
Q Consensus 134 rk~YlHESRH~HAm~R~RG~gGRFl~k~e 162 (274)
-|.-.+++|..=|..|+|-. |||++.+|
T Consensus 18 ~kkirY~~Rk~~A~~R~Rvk-GRFvk~~e 45 (45)
T PF06203_consen 18 EKKIRYESRKAVADKRPRVK-GRFVKKSE 45 (45)
T ss_pred cccCCcchHHHHHhhCCccC-CcccCCCC
Confidence 35667899999999999975 99998764
No 6
>KOG1561 consensus CCAAT-binding factor, subunit B (HAP2) [Transcription]
Probab=31.73 E-value=32 Score=33.23 Aligned_cols=41 Identities=56% Similarity=0.949 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHhhhhhhcCCCcchhchhHHHhhcCCCCCCcccc
Q 024014 114 ILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGSGGRFAK 159 (274)
Q Consensus 114 IlrRRq~RaK~e~e~kl~k~rk~YlHESRH~HAm~R~RG~gGRFl~ 159 (274)
+++++..+++.+-. -.....+||++|+.+.+.+ +.+++|++
T Consensus 14 ~~~~~~~~q~~~~~-~~~~~~~p~~~~s~~~~q~----~~s~~~~s 54 (307)
T KOG1561|consen 14 ILKRREARQKPEER-GVQTTKKPYLHESGHKHQM----GPGGRFLS 54 (307)
T ss_pred cccccccccccccc-ccccccccccCcccccccc----cccccccC
Confidence 67777777664432 4567899999999999999 88999997
No 7
>PF08331 DUF1730: Domain of unknown function (DUF1730); InterPro: IPR013542 This domain of unknown function occurs in iron-sulphur cluster-binding proteins together with the 4Fe-4S binding domain (IPR001450 from INTERPRO).
Probab=23.23 E-value=1.2e+02 Score=22.84 Aligned_cols=26 Identities=12% Similarity=0.270 Sum_probs=19.0
Q ss_pred eechhhhhHHHHHHHHHHHHHHhhhh
Q 024014 105 YVNAKQYMGILRRRQARAKAELEKKL 130 (274)
Q Consensus 105 yVNaKQY~rIlrRRq~RaK~e~e~kl 130 (274)
|.=-.-||.+||+|..+.-.-++.+.
T Consensus 42 YA~G~DYH~vlk~~L~~l~~~i~~~~ 67 (78)
T PF08331_consen 42 YAWGRDYHKVLKKKLEQLAEWIRELG 67 (78)
T ss_pred hhccCChHHHHHHHHHHHHHHHHHHC
Confidence 44456899999999988766665554
No 8
>PF15046 DUF4532: Protein of unknown function (DUF4532)
Probab=21.69 E-value=1e+02 Score=29.79 Aligned_cols=23 Identities=13% Similarity=0.332 Sum_probs=17.9
Q ss_pred CCCCeeechhhhhHHHHHHHHHH
Q 024014 100 AQEPVYVNAKQYMGILRRRQARA 122 (274)
Q Consensus 100 ~eePvyVNaKQY~rIlrRRq~Ra 122 (274)
.+-||||++++=+.++.|=.+..
T Consensus 131 ~~~pif~D~~rK~qvI~rt~KEL 153 (279)
T PF15046_consen 131 SCTPIFVDPNRKNQVILRTVKEL 153 (279)
T ss_pred hcccceechhhhhHHHHHHHHHH
Confidence 45699999999988887755543
No 9
>cd01183 INT_SG1_C INT_SG1, DNA breaking-rejoining enzymes, integrase/recombinases subgroup 1, C-terminal catalytic domain. The CD contains mainly predicted integrase/recombinase and site-specific XerD recombinases. The members of this CD are found predominantly in proteobacteria. These proteins have not been biochemically characerised as yet.
Probab=13.83 E-value=4.1e+02 Score=21.59 Aligned_cols=44 Identities=25% Similarity=0.283 Sum_probs=24.9
Q ss_pred hhhhhHHHHHHHHHHHHHHhh-----hhhhcCCCcchhchhHHHhhcCC
Q 024014 108 AKQYMGILRRRQARAKAELEK-----KLIKVRKPYLHESRHQHAMRRAR 151 (274)
Q Consensus 108 aKQY~rIlrRRq~RaK~e~e~-----kl~k~rk~YlHESRH~HAm~R~R 151 (274)
...+.+|+++--.++...+.. .....+.--.|.=||.+|..-..
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~lRht~at~l~~ 171 (196)
T cd01183 123 SAQLYRIVKRVFGAAADRLQADGFEEDAAQLRAASTHWLRHTHASHDLA 171 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccChhHHHhhcccchHHHHHHHHHHHHH
Confidence 345777887765555433221 01112344589999999976543
No 10
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=13.34 E-value=2.3e+02 Score=28.19 Aligned_cols=42 Identities=26% Similarity=0.267 Sum_probs=34.1
Q ss_pred CCCCeeechhhhhHHHHHHHHHHHHHHhhhhhhcCCCcchhc
Q 024014 100 AQEPVYVNAKQYMGILRRRQARAKAELEKKLIKVRKPYLHES 141 (274)
Q Consensus 100 ~eePvyVNaKQY~rIlrRRq~RaK~e~e~kl~k~rk~YlHES 141 (274)
...|||||-|-.--.--+|..-|-..++..++..-.+|||||
T Consensus 283 ~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es 324 (366)
T KOG2796|consen 283 PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHES 324 (366)
T ss_pred CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhh
Confidence 457999999998777777777777677777777888999995
Done!