Query 024014
Match_columns 274
No_of_seqs 144 out of 217
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 16:42:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024014.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024014hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g92_A HAPB protein; transcrip 100.0 7.6E-37 2.6E-41 228.5 5.3 62 101-162 2-64 (64)
2 2anv_A Lysozyme; direct method 9.1 1.2E+02 0.004 24.1 1.4 21 103-124 123-143 (146)
3 1b9w_A Protein (merozoite surf 8.8 56 0.0019 26.0 -0.6 20 55-74 69-89 (95)
4 1xju_A Lysozyme; secreted inac 8.6 1.7E+02 0.0059 23.8 2.2 26 103-128 128-153 (163)
5 3hde_A Lysozyme; antimicrobial 7.8 2E+02 0.0068 23.6 2.3 25 103-127 138-162 (165)
6 1qfq_B N36, 36-MER N-terminal 7.3 2.2E+02 0.0074 18.9 1.8 15 115-129 4-18 (35)
7 1xjt_A Lysozyme; open conforma 6.8 2.3E+02 0.0079 23.8 2.2 26 103-128 156-181 (191)
8 2k2w_A Recombination and DNA r 5.6 1.7E+02 0.0058 23.8 0.7 13 102-114 18-30 (118)
9 3q12_A Pantoate--beta-alanine 5.4 1.6E+02 0.0054 27.0 0.4 10 103-112 57-66 (287)
10 3gxv_A Replicative DNA helicas 5.3 4E+02 0.014 20.4 2.7 24 102-125 88-111 (123)
No 1
>4g92_A HAPB protein; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Emericella nidulans} PDB: 4g91_A*
Probab=100.00 E-value=7.6e-37 Score=228.49 Aligned_cols=62 Identities=61% Similarity=0.978 Sum_probs=58.5
Q ss_pred CCCeeechhhhhHHHHHHHHHHHHHHhhhhh-hcCCCcchhchhHHHhhcCCCCCCcccccCC
Q 024014 101 QEPVYVNAKQYMGILRRRQARAKAELEKKLI-KVRKPYLHESRHQHAMRRARGSGGRFAKKTD 162 (274)
Q Consensus 101 eePvyVNaKQY~rIlrRRq~RaK~e~e~kl~-k~rk~YlHESRH~HAm~R~RG~gGRFl~k~e 162 (274)
|+|||||||||++|||||++|||+|++++++ +.||||||||||+|||+|+||+||||||++|
T Consensus 2 eePiyVNaKQy~~IlrRR~~Rakle~~~kl~~~~rk~YlhESRH~HAm~R~Rg~gGRFl~~~e 64 (64)
T 4g92_A 2 ESPLYVNAKQFHRILKRRVARQKLEEQLRLTSKGRKPYLHESRHNHAMRRPRGPGGRFLTADE 64 (64)
T ss_dssp -CCSCCCTTTHHHHHHHHHHHHHHHHHTTCCSSSCCSCSCHHHHHHHHHSCBCTTSCBCCCC-
T ss_pred CCCeeECHHHHHHHHHHHHHHHHHHHhCCcccccccCcchhHHHHHHhcCCcCCCCccccCCC
Confidence 7999999999999999999999999999985 8899999999999999999999999999875
No 2
>2anv_A Lysozyme; direct methods, lanthinide binding sites, hydrolase; 1.04A {Enterobacteria phage P22} PDB: 2anx_A
Probab=9.13 E-value=1.2e+02 Score=24.11 Aligned_cols=21 Identities=14% Similarity=-0.067 Sum_probs=16.5
Q ss_pred CeeechhhhhHHHHHHHHHHHH
Q 024014 103 PVYVNAKQYMGILRRRQARAKA 124 (274)
Q Consensus 103 PvyVNaKQY~rIlrRRq~RaK~ 124 (274)
-+|++-| ..++.+||++.+.+
T Consensus 123 w~~~~Gk-~~GL~~RR~~E~~l 143 (146)
T 2anv_A 123 WKKAGKD-PDILLPRRRRERAL 143 (146)
T ss_dssp CCCBTTB-TTTTHHHHHHHHHH
T ss_pred HHHcCCe-eHHHHHHHHHHHHH
Confidence 4566778 89999999988765
No 3
>1b9w_A Protein (merozoite surface protein 1); MSP-1, candidate malaria vaccine, surface antigen; 1.80A {Plasmodium cynomolgi} SCOP: g.3.11.4 g.3.11.4 PDB: 2npr_A
Probab=8.84 E-value=56 Score=25.98 Aligned_cols=20 Identities=20% Similarity=0.657 Sum_probs=16.8
Q ss_pred ccccc-CCCCCCCCccccccc
Q 024014 55 SIACA-SNPYQDPYYGGMMAA 74 (274)
Q Consensus 55 s~a~~-~~py~Dpyygg~~aa 74 (274)
-|.|+ +.||..|||.|+|-+
T Consensus 69 kIvC~C~~~~~~~~~~gvf~~ 89 (95)
T 1b9w_A 69 EIVCKCTKEGSEPLFEGVFCS 89 (95)
T ss_dssp CEEEECCSTTEEEEGGGTEEE
T ss_pred cEEEECCCCCCCcceeeEEec
Confidence 46777 789999999999964
No 4
>1xju_A Lysozyme; secreted inactive conformation, hydrolase; 1.07A {Enterobacteria phage P1} SCOP: d.2.1.3
Probab=8.59 E-value=1.7e+02 Score=23.79 Aligned_cols=26 Identities=23% Similarity=0.174 Sum_probs=20.5
Q ss_pred CeeechhhhhHHHHHHHHHHHHHHhh
Q 024014 103 PVYVNAKQYMGILRRRQARAKAELEK 128 (274)
Q Consensus 103 PvyVNaKQY~rIlrRRq~RaK~e~e~ 128 (274)
-+|++-|-..++.+||++.+.+=+.+
T Consensus 128 W~~~gGk~~~GL~~RR~~E~~l~~~~ 153 (163)
T 1xju_A 128 FVNSNGVPLRGLKIRREKERQLCLTG 153 (163)
T ss_dssp CCEETTEECHHHHHHHHHHHHHHHTT
T ss_pred HhhcCCEEehhhHHHHHHHHHHHhCC
Confidence 45677788999999999988876543
No 5
>3hde_A Lysozyme; antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase, late protein; 1.95A {Enterobacteria phage P21}
Probab=7.80 E-value=2e+02 Score=23.57 Aligned_cols=25 Identities=28% Similarity=0.423 Sum_probs=18.8
Q ss_pred CeeechhhhhHHHHHHHHHHHHHHh
Q 024014 103 PVYVNAKQYMGILRRRQARAKAELE 127 (274)
Q Consensus 103 PvyVNaKQY~rIlrRRq~RaK~e~e 127 (274)
-+|++-|-..++.+||++..++=+.
T Consensus 138 W~~agGk~~~GLv~RR~~E~~l~l~ 162 (165)
T 3hde_A 138 WTYAGGKQWKGLMTRREIEREICLW 162 (165)
T ss_dssp CCEETTEECHHHHHHHHHHHHHHTG
T ss_pred HhhcCCEEchhHHHHHHHHHHHHHc
Confidence 4566778889999999988776443
No 6
>1qfq_B N36, 36-MER N-terminal peptide of the N protein; bacteriophage lambda, antitermination, peptide-RNA-complex; NMR {Enterobacteria phage lambda} SCOP: j.9.5.1
Probab=7.34 E-value=2.2e+02 Score=18.87 Aligned_cols=15 Identities=40% Similarity=0.528 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHhhh
Q 024014 115 LRRRQARAKAELEKK 129 (274)
Q Consensus 115 lrRRq~RaK~e~e~k 129 (274)
-|||+.||...++=|
T Consensus 4 ~rrrerra~kqa~wk 18 (35)
T 1qfq_B 4 TRRRERRAEKQAQWK 18 (35)
T ss_dssp HHHHHHTHHHHHHHH
T ss_pred hHHHHHHHHHHhhhh
Confidence 478888877665543
No 7
>1xjt_A Lysozyme; open conformation, hydrolase; HET: CIT; 1.75A {Enterobacteria phage P1} SCOP: d.2.1.3
Probab=6.77 E-value=2.3e+02 Score=23.83 Aligned_cols=26 Identities=23% Similarity=0.174 Sum_probs=20.3
Q ss_pred CeeechhhhhHHHHHHHHHHHHHHhh
Q 024014 103 PVYVNAKQYMGILRRRQARAKAELEK 128 (274)
Q Consensus 103 PvyVNaKQY~rIlrRRq~RaK~e~e~ 128 (274)
-+|++-|...++.+||++.+.+=+.+
T Consensus 156 W~~~gGk~l~GLv~RR~~E~~l~~~~ 181 (191)
T 1xjt_A 156 FVNSNGVPLRGLKIRREKERQLCLTG 181 (191)
T ss_dssp CCEETTEECHHHHHHHHHHHHHHHBT
T ss_pred HhhcCCEEehhHHHHHHHHHHHHhCC
Confidence 45667788999999999988775543
No 8
>2k2w_A Recombination and DNA repair protein; BRCT domain, cell cycle checkpoint; NMR {Xenopus laevis}
Probab=5.61 E-value=1.7e+02 Score=23.82 Aligned_cols=13 Identities=38% Similarity=0.595 Sum_probs=10.3
Q ss_pred CCeeechhhhhHH
Q 024014 102 EPVYVNAKQYMGI 114 (274)
Q Consensus 102 ePvyVNaKQY~rI 114 (274)
.=||.|+|||.+.
T Consensus 18 tFvFLn~KQ~kkl 30 (118)
T 2k2w_A 18 VFLFLNAKQYKKL 30 (118)
T ss_dssp EEEESCSSTHHHH
T ss_pred EEEEeCHHHHHHH
Confidence 3589999999764
No 9
>3q12_A Pantoate--beta-alanine ligase; structural genomics, center for structural genomics of infec diseases, csgid; HET: PAF; 1.58A {Yersinia pestis} SCOP: c.26.1.4 PDB: 3q10_A* 3mue_A 1iho_A 3guz_A*
Probab=5.39 E-value=1.6e+02 Score=26.99 Aligned_cols=10 Identities=30% Similarity=0.650 Sum_probs=8.2
Q ss_pred Ceeechhhhh
Q 024014 103 PVYVNAKQYM 112 (274)
Q Consensus 103 PvyVNaKQY~ 112 (274)
-|||||-||.
T Consensus 57 SIFVNP~QF~ 66 (287)
T 3q12_A 57 TIFVNPLQFE 66 (287)
T ss_dssp EECCCGGGCS
T ss_pred EeccCcccCC
Confidence 6899999963
No 10
>3gxv_A Replicative DNA helicase; hexameric helicase, primase, replication, ATP-binding, autocatalytic cleavage, DNA replication; 2.20A {Helicobacter pylori} PDB: 3gxv_D 3gxv_C
Probab=5.33 E-value=4e+02 Score=20.42 Aligned_cols=24 Identities=13% Similarity=0.137 Sum_probs=20.1
Q ss_pred CCeeechhhhhHHHHHHHHHHHHH
Q 024014 102 EPVYVNAKQYMGILRRRQARAKAE 125 (274)
Q Consensus 102 ePvyVNaKQY~rIlrRRq~RaK~e 125 (274)
-|--.|.+.|-+|++.+..|.++-
T Consensus 88 ~ps~ani~~Ya~iV~e~s~~R~li 111 (123)
T 3gxv_A 88 ASPIDNIEAYVEEIKNASIKRKLF 111 (123)
T ss_dssp SCCCSCTHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 566679999999999998887754
Done!