Query 024014
Match_columns 274
No_of_seqs 144 out of 217
Neff 2.8
Searched_HMMs 13730
Date Mon Mar 25 16:42:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024014.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024014hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ob1c2 g.3.11.4 (C:46-96) Mer 15.7 20 0.0015 24.1 0.6 24 53-76 26-50 (51)
2 d1v8fa_ c.26.1.4 (A:) Pantothe 10.1 31 0.0022 28.9 0.2 9 103-111 49-57 (276)
3 d1ihoa_ c.26.1.4 (A:) Pantothe 7.8 44 0.0032 28.0 0.3 11 103-113 54-64 (282)
4 d2a84a1 c.26.1.4 (A:3-288) Pan 6.8 47 0.0034 27.8 -0.0 12 103-114 63-74 (286)
5 d1xjua_ d.2.1.3 (A:) Endolysin 6.5 1.3E+02 0.0095 21.7 2.4 26 105-130 130-155 (158)
6 d1y7ua1 d.38.1.1 (A:8-171) Acy 4.1 3.8E+02 0.028 19.5 3.8 24 108-131 135-158 (164)
7 d2huja1 a.24.26.1 (A:1-120) Hy 3.5 4.2E+02 0.031 19.4 3.5 36 107-142 36-71 (120)
8 d1z60a1 g.49.1.2 (A:328-386) T 3.2 1.2E+02 0.0091 20.4 0.0 7 137-143 47-53 (59)
9 d1d6ta_ d.14.1.2 (A:) RNase P 3.1 1.5E+02 0.011 20.5 0.5 11 5-15 1-11 (117)
10 d1k46a_ d.195.1.1 (A:) YopH ty 3.0 2.7E+02 0.02 21.0 1.8 19 247-265 16-34 (124)
No 1
>d1ob1c2 g.3.11.4 (C:46-96) Merozoite surface protein 1 (MSP-1) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
Probab=15.74 E-value=20 Score=24.11 Aligned_cols=24 Identities=25% Similarity=0.686 Sum_probs=18.8
Q ss_pred Ccccccc-CCCCCCCCccccccccC
Q 024014 53 GHSIACA-SNPYQDPYYGGMMAAYG 76 (274)
Q Consensus 53 g~s~a~~-~~py~Dpyygg~~aaYg 76 (274)
+.-|+|. +-|-..|||.|+|-+|-
T Consensus 26 skkIvC~Ck~p~~~~~~~GVFCS~~ 50 (51)
T d1ob1c2 26 GKKITCECTKPDSYPLFDGIFCSHH 50 (51)
T ss_dssp SCCCEEEECSTTCCEEGGGTEECCC
T ss_pred cceEEEEecCCCCCcccceEEeecc
Confidence 3457777 67888999999998873
No 2
>d1v8fa_ c.26.1.4 (A:) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Thermus thermophilus [TaxId: 274]}
Probab=10.08 E-value=31 Score=28.89 Aligned_cols=9 Identities=44% Similarity=0.818 Sum_probs=7.6
Q ss_pred Ceeechhhh
Q 024014 103 PVYVNAKQY 111 (274)
Q Consensus 103 PvyVNaKQY 111 (274)
.|||||.||
T Consensus 49 SIFVNP~QF 57 (276)
T d1v8fa_ 49 SVFVNPLQF 57 (276)
T ss_dssp EECCCGGGC
T ss_pred EEEecCccC
Confidence 579999994
No 3
>d1ihoa_ c.26.1.4 (A:) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Escherichia coli [TaxId: 562]}
Probab=7.83 E-value=44 Score=28.04 Aligned_cols=11 Identities=27% Similarity=0.561 Sum_probs=8.7
Q ss_pred CeeechhhhhH
Q 024014 103 PVYVNAKQYMG 113 (274)
Q Consensus 103 PvyVNaKQY~r 113 (274)
.|||||.||..
T Consensus 54 SIFVNP~QF~~ 64 (282)
T d1ihoa_ 54 SIFVNPMQFDR 64 (282)
T ss_dssp EECCCGGGCSS
T ss_pred EEEecCccCcc
Confidence 58999988643
No 4
>d2a84a1 c.26.1.4 (A:3-288) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=6.75 E-value=47 Score=27.82 Aligned_cols=12 Identities=25% Similarity=0.418 Sum_probs=9.2
Q ss_pred CeeechhhhhHH
Q 024014 103 PVYVNAKQYMGI 114 (274)
Q Consensus 103 PvyVNaKQY~rI 114 (274)
.|||||.||.--
T Consensus 63 SIFVNP~QF~~~ 74 (286)
T d2a84a1 63 SIFVNPMQFGAG 74 (286)
T ss_dssp EECCCCCCTTC-
T ss_pred EEeecccccCcc
Confidence 679999997653
No 5
>d1xjua_ d.2.1.3 (A:) Endolysin Lyz {Bacteriophage P1 [TaxId: 10678]}
Probab=6.46 E-value=1.3e+02 Score=21.71 Aligned_cols=26 Identities=19% Similarity=0.175 Sum_probs=19.1
Q ss_pred eechhhhhHHHHHHHHHHHHHHhhhh
Q 024014 105 YVNAKQYMGILRRRQARAKAELEKKL 130 (274)
Q Consensus 105 yVNaKQY~rIlrRRq~RaK~e~e~kl 130 (274)
+.+-|-..++.+||++.+++=+++.+
T Consensus 130 ~~~g~~~~GL~~RR~~E~~L~l~g~~ 155 (158)
T d1xjua_ 130 NSNGVPLRGLKIRREKERQLCLTGLV 155 (158)
T ss_dssp EETTEECHHHHHHHHHHHHHHHTTTS
T ss_pred hcCCEEChhHHHHHHHHHHHHHcccc
Confidence 34445578999999999888776643
No 6
>d1y7ua1 d.38.1.1 (A:8-171) Acyl-coa hydrolase BC2038 {Bacillus cereus [TaxId: 1396]}
Probab=4.11 E-value=3.8e+02 Score=19.53 Aligned_cols=24 Identities=17% Similarity=0.087 Sum_probs=14.5
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhhh
Q 024014 108 AKQYMGILRRRQARAKAELEKKLI 131 (274)
Q Consensus 108 aKQY~rIlrRRq~RaK~e~e~kl~ 131 (274)
.+.|..-.+|+++|...+.+.+-.
T Consensus 135 ~~~~~~a~~r~~~R~~r~~~~~~~ 158 (164)
T d1y7ua1 135 KESHRIAVLRAEQRHIRKAESKKV 158 (164)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666667777776666554433
No 7
>d2huja1 a.24.26.1 (A:1-120) Hypothetical protein Lin2004 {Listeria innocua [TaxId: 1642]}
Probab=3.47 E-value=4.2e+02 Score=19.41 Aligned_cols=36 Identities=19% Similarity=0.177 Sum_probs=20.5
Q ss_pred chhhhhHHHHHHHHHHHHHHhhhhhhcCCCcchhch
Q 024014 107 NAKQYMGILRRRQARAKAELEKKLIKVRKPYLHESR 142 (274)
Q Consensus 107 NaKQY~rIlrRRq~RaK~e~e~kl~k~rk~YlHESR 142 (274)
.-|=|-..+.....+=+..+..-+...|-+|||++-
T Consensus 36 ~VKPf~d~vd~~l~~W~~~a~~~i~~~rp~y~h~~Q 71 (120)
T d2huja1 36 DMKPFVDEAKRCADDFLELAIPWVNTERPPYLGELQ 71 (120)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCCHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhCcccCCHHH
Confidence 334444455555555443444344447999999875
No 8
>d1z60a1 g.49.1.2 (A:328-386) TFIIH p44 subunit cysteine-rich domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.16 E-value=1.2e+02 Score=20.35 Aligned_cols=7 Identities=43% Similarity=1.028 Sum_probs=3.9
Q ss_pred cchhchh
Q 024014 137 YLHESRH 143 (274)
Q Consensus 137 YlHESRH 143 (274)
|+||+.|
T Consensus 47 fiHe~lh 53 (59)
T d1z60a1 47 FVHDSLH 53 (59)
T ss_dssp TTTTTSC
T ss_pred hhhhhhc
Confidence 4555555
No 9
>d1d6ta_ d.14.1.2 (A:) RNase P protein {Staphylococcus aureus [TaxId: 1280]}
Probab=3.12 E-value=1.5e+02 Score=20.53 Aligned_cols=11 Identities=36% Similarity=0.582 Sum_probs=8.3
Q ss_pred ccccccCCCCC
Q 024014 5 MMLTKNHRLPH 15 (274)
Q Consensus 5 ~~~~~~~~~~~ 15 (274)
|||.|.+||-.
T Consensus 1 mml~k~~RL~~ 11 (117)
T d1d6ta_ 1 MLLEKAYRIKK 11 (117)
T ss_dssp CCCCGGGBCCS
T ss_pred CCCchhhhcCC
Confidence 67888888754
No 10
>d1k46a_ d.195.1.1 (A:) YopH tyrosine phosphatase N-terminal domain {Yersinia pseudotuberculosis [TaxId: 633]}
Probab=2.97 E-value=2.7e+02 Score=21.01 Aligned_cols=19 Identities=42% Similarity=0.957 Sum_probs=14.9
Q ss_pred CCCCCCCCCccccccCCCC
Q 024014 247 RGETGDCSGKQWGSISSNQ 265 (274)
Q Consensus 247 ~~eegdc~gqq~~s~~~n~ 265 (274)
+-|.|||-|+-++..-.|+
T Consensus 16 eq~~Gd~~GkLrg~vaan~ 34 (124)
T d1k46a_ 16 QQESGDCTGKLRGNVAANK 34 (124)
T ss_dssp HTTCTTSCCCCCCCCCCCC
T ss_pred HhcCccceeeehhhhhccc
Confidence 3567999999999886654
Done!