BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024016
(274 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IZZ|A Chain A, Crystal Structure Of Human Pyrroline-5-Carboxylate
Reductase
pdb|2IZZ|B Chain B, Crystal Structure Of Human Pyrroline-5-Carboxylate
Reductase
pdb|2IZZ|C Chain C, Crystal Structure Of Human Pyrroline-5-Carboxylate
Reductase
pdb|2IZZ|D Chain D, Crystal Structure Of Human Pyrroline-5-Carboxylate
Reductase
pdb|2IZZ|E Chain E, Crystal Structure Of Human Pyrroline-5-Carboxylate
Reductase
Length = 322
Score = 199 bits (505), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 118/270 (43%), Positives = 157/270 (58%), Gaps = 5/270 (1%)
Query: 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRI-CTAVHSNLKRRDAFESIGVKVLSDNNA 67
+S +GFIGAG++A ++AKG +GVL +I ++ +L A +GVK+ N
Sbjct: 21 QSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKE 80
Query: 68 XXXXXXXXXXXXXXXXXXXXAMQIRPLLSRKKLLVSVAAGVKL----KDLQEWTGHSRFI 123
+I + + ++VS AAGV + K L + R I
Sbjct: 81 TVQHSDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSAFRPAPRVI 140
Query: 124 RVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGP 183
R M NTP V E ATV + G A EDG L+ +L SVG +E L DA+TGLSGSGP
Sbjct: 141 RCMTNTPVVVREGATVYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDLIDAVTGLSGSGP 200
Query: 184 AYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTT 243
AY F A++ALADGGV GLPR LA+ L +Q +LGAA M+ S +HPGQLKD+V+SPGG T
Sbjct: 201 AYAFTALDALADGGVKMGLPRRLAVRLGAQALLGAAKMLLHSEQHPGQLKDNVSSPGGAT 260
Query: 244 IAGIHELEKSGFRGILMNAVVAAAKRSREL 273
I +H LE GFR +L+NAV A+ R+REL
Sbjct: 261 IHALHVLESGGFRSLLINAVEASCIRTREL 290
>pdb|2GR9|A Chain A, Crystal Structure Of P5cr Complexed With Nadh
pdb|2GR9|B Chain B, Crystal Structure Of P5cr Complexed With Nadh
pdb|2GR9|C Chain C, Crystal Structure Of P5cr Complexed With Nadh
pdb|2GR9|D Chain D, Crystal Structure Of P5cr Complexed With Nadh
pdb|2GR9|E Chain E, Crystal Structure Of P5cr Complexed With Nadh
pdb|2GRA|A Chain A, Crystal Structure Of Human Pyrroline-5-carboxylate
Reductase Complexed With Nadp
pdb|2GRA|B Chain B, Crystal Structure Of Human Pyrroline-5-carboxylate
Reductase Complexed With Nadp
pdb|2GRA|C Chain C, Crystal Structure Of Human Pyrroline-5-carboxylate
Reductase Complexed With Nadp
pdb|2GRA|D Chain D, Crystal Structure Of Human Pyrroline-5-carboxylate
Reductase Complexed With Nadp
pdb|2GRA|E Chain E, Crystal Structure Of Human Pyrroline-5-carboxylate
Reductase Complexed With Nadp
Length = 277
Score = 197 bits (500), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 117/267 (43%), Positives = 155/267 (58%), Gaps = 5/267 (1%)
Query: 13 LGFIGAGKMAESIAKGVAKSGVLPPDRI-CTAVHSNLKRRDAFESIGVKVLSDNNAXXXX 71
+GFIGAG++A ++AKG +GVL +I ++ +L A +GVK+ N
Sbjct: 5 VGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQH 64
Query: 72 XXXXXXXXXXXXXXXXAMQIRPLLSRKKLLVSVAAGVKL----KDLQEWTGHSRFIRVMP 127
+I + + ++VS AAGV + K L + R IR M
Sbjct: 65 SDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSAFRPAPRVIRCMT 124
Query: 128 NTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIF 187
NTP V E ATV + G A EDG L+ +L SVG +E L DA+TGLSGSGPAY F
Sbjct: 125 NTPVVVREGATVYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDLIDAVTGLSGSGPAYAF 184
Query: 188 LAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGI 247
A++ALADGGV GLPR LA+ L +Q +LGAA M+ S +HPGQLKD+V+SPGG TI +
Sbjct: 185 TALDALADGGVKMGLPRRLAVRLGAQALLGAAKMLLHSEQHPGQLKDNVSSPGGATIHAL 244
Query: 248 HELEKSGFRGILMNAVVAAAKRSRELS 274
H LE GFR +L+NAV A+ R+REL
Sbjct: 245 HVLESGGFRSLLINAVEASCIRTRELQ 271
>pdb|2GER|A Chain A, Crystal Structure And Oxidative Mechanism Of Human
Pyrroline-5- Carboxylate Reductase
pdb|2GER|B Chain B, Crystal Structure And Oxidative Mechanism Of Human
Pyrroline-5- Carboxylate Reductase
pdb|2GER|C Chain C, Crystal Structure And Oxidative Mechanism Of Human
Pyrroline-5- Carboxylate Reductase
pdb|2GER|D Chain D, Crystal Structure And Oxidative Mechanism Of Human
Pyrroline-5- Carboxylate Reductase
pdb|2GER|E Chain E, Crystal Structure And Oxidative Mechanism Of Human
Pyrroline-5- Carboxylate Reductase
Length = 321
Score = 197 bits (500), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 117/266 (43%), Positives = 155/266 (58%), Gaps = 5/266 (1%)
Query: 13 LGFIGAGKMAESIAKGVAKSGVLPPDRI-CTAVHSNLKRRDAFESIGVKVLSDNNAXXXX 71
+GFIGAG++A ++AKG +GVL +I ++ +L A +GVK+ N
Sbjct: 5 VGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQH 64
Query: 72 XXXXXXXXXXXXXXXXAMQIRPLLSRKKLLVSVAAGVKL----KDLQEWTGHSRFIRVMP 127
+I + + ++VS AAGV + K L + R IR M
Sbjct: 65 SDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSAFRPAPRVIRCMT 124
Query: 128 NTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIF 187
NTP V E ATV + G A EDG L+ +L SVG +E L DA+TGLSGSGPAY F
Sbjct: 125 NTPVVVREGATVYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDLIDAVTGLSGSGPAYAF 184
Query: 188 LAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGI 247
A++ALADGGV GLPR LA+ L +Q +LGAA M+ S +HPGQLKD+V+SPGG TI +
Sbjct: 185 TALDALADGGVKMGLPRRLAVRLGAQALLGAAKMLLHSEQHPGQLKDNVSSPGGATIHAL 244
Query: 248 HELEKSGFRGILMNAVVAAAKRSREL 273
H LE GFR +L+NAV A+ R+REL
Sbjct: 245 HVLESGGFRSLLINAVEASCIRTREL 270
>pdb|2RCY|A Chain A, Crystal Structure Of Plasmodium Falciparum Pyrroline
Carboxylate Reductase (Mal13p1.284) With Nadp Bound
pdb|2RCY|B Chain B, Crystal Structure Of Plasmodium Falciparum Pyrroline
Carboxylate Reductase (Mal13p1.284) With Nadp Bound
pdb|2RCY|C Chain C, Crystal Structure Of Plasmodium Falciparum Pyrroline
Carboxylate Reductase (Mal13p1.284) With Nadp Bound
pdb|2RCY|D Chain D, Crystal Structure Of Plasmodium Falciparum Pyrroline
Carboxylate Reductase (Mal13p1.284) With Nadp Bound
pdb|2RCY|E Chain E, Crystal Structure Of Plasmodium Falciparum Pyrroline
Carboxylate Reductase (Mal13p1.284) With Nadp Bound
Length = 262
Score = 144 bits (362), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 74/183 (40%), Positives = 106/183 (57%), Gaps = 2/183 (1%)
Query: 90 QIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSLGGTATE 148
I+P LS K LL+S+ G+ + L+E G ++ + V PNTP VGE + +
Sbjct: 77 NIKPYLSSK-LLISICGGLNIGKLEEXVGSENKIVWVXPNTPCLVGEGSFIYCSNKNVNS 135
Query: 149 EDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELAL 208
D + + +F S G I EK D T +SG GPAY++L IE+L D GV GL REL+
Sbjct: 136 TDKKYVNDIFNSCGIIHEIKEKDXDIATAISGCGPAYVYLFIESLIDAGVKNGLSRELSK 195
Query: 209 GLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAAAK 268
L QT+ G+ V KS + QLKD++ SPGG T G++ LEK+ F+ + NAV AA +
Sbjct: 196 NLVLQTIKGSVEXVKKSDQPVQQLKDNIVSPGGITAVGLYSLEKNSFKYTVXNAVEAACE 255
Query: 269 RSR 271
+S+
Sbjct: 256 KSK 258
>pdb|3TRI|A Chain A, Structure Of A Pyrroline-5-Carboxylate Reductase (Proc)
From Coxiella Burnetii
pdb|3TRI|B Chain B, Structure Of A Pyrroline-5-Carboxylate Reductase (Proc)
From Coxiella Burnetii
Length = 280
Score = 139 bits (351), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 98/266 (36%), Positives = 133/266 (50%), Gaps = 6/266 (2%)
Query: 13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF-ESIGVKVLSDNNAXXXX 71
+ FIG G A +I G+ +G P+RIC S L + D F E GV DN
Sbjct: 6 ITFIGGGNXARNIVVGLIANG-YDPNRICVTNRS-LDKLDFFKEKCGVHTTQDNRQGALN 63
Query: 72 XXXXXXXXXXXXXXXXAMQIRPLLSRKKLLV-SVAAGVKLKDLQEWTGH-SRFIRVMPNT 129
+++ +LS K+LV S+A GV +++W G SR +R PNT
Sbjct: 64 ADVVVLAVKPHQIKXVCEELKDILSETKILVISLAVGVTTPLIEKWLGKASRIVRAXPNT 123
Query: 130 PSAVGEAATVMSLGGTATEEDGELIGKLFGSVG-KIWRADEKLFDAITGLSGSGPAYIFL 188
PS+V AT + T ++ L + +VG IW + E + I LSGSGPAYIFL
Sbjct: 124 PSSVRAGATGLFANETVDKDQKNLAESIXRAVGLVIWVSSEDQIEKIAALSGSGPAYIFL 183
Query: 189 AIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIH 248
EAL + GL +E A L QTVLGAA ++ + QL+ V SPGGTT I
Sbjct: 184 IXEALQEAAEQLGLTKETAELLTEQTVLGAARXALETEQSVVQLRQFVTSPGGTTEQAIK 243
Query: 249 ELEKSGFRGILMNAVVAAAKRSRELS 274
LE R + + A+ AA R++ELS
Sbjct: 244 VLESGNLRELFIKALTAAVNRAKELS 269
>pdb|3GT0|A Chain A, Crystal Structure Of Pyrroline 5-Carboxylate Reductase
From Bacillus Cereus. Northeast Structural Genomics
Consortium Target Bcr38b
Length = 247
Score = 124 bits (310), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 80/243 (32%), Positives = 124/243 (51%), Gaps = 1/243 (0%)
Query: 13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAXXXXX 72
+GFIG G + G ++ ++I + + ++A E G+ +DNN
Sbjct: 5 IGFIGCGNXGXAXIGGXINKNIVSSNQIICSDLNTANLKNASEKYGLTTTTDNNEVAKNA 64
Query: 73 XXXXXXXXXXXXXXXAMQIRPLLSRKKLLVSVAAGVKLKDLQE-WTGHSRFIRVMPNTPS 131
+I+ ++ ++V++AAG ++ + + + +RV PNTP+
Sbjct: 65 DILILSIKPDLYASIINEIKEIIKNDAIIVTIAAGKSIESTENAFNKKVKVVRVXPNTPA 124
Query: 132 AVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIFLAIE 191
VGE + + TE+D E + +F S G+ EKL D +T +SGS PAY++ IE
Sbjct: 125 LVGEGXSALCPNEXVTEKDLEDVLNIFNSFGQTEIVSEKLXDVVTSVSGSSPAYVYXIIE 184
Query: 192 ALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELE 251
A AD V G PR A A+Q VLG+A V ++G HPG+LKD V SPGGTTI + LE
Sbjct: 185 AXADAAVLDGXPRNQAYKFAAQAVLGSAKXVLETGIHPGELKDXVCSPGGTTIEAVATLE 244
Query: 252 KSG 254
+ G
Sbjct: 245 EKG 247
>pdb|2AMF|A Chain A, Crystal Structure Of 1-Pyrroline-5-Carboxylate Reductase
From Human Pathogen Streptococcus Pyogenes
pdb|2AMF|B Chain B, Crystal Structure Of 1-Pyrroline-5-Carboxylate Reductase
From Human Pathogen Streptococcus Pyogenes
pdb|2AMF|C Chain C, Crystal Structure Of 1-Pyrroline-5-Carboxylate Reductase
From Human Pathogen Streptococcus Pyogenes
pdb|2AMF|D Chain D, Crystal Structure Of 1-Pyrroline-5-Carboxylate Reductase
From Human Pathogen Streptococcus Pyogenes
pdb|2AMF|E Chain E, Crystal Structure Of 1-Pyrroline-5-Carboxylate Reductase
From Human Pathogen Streptococcus Pyogenes
Length = 259
Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 83/263 (31%), Positives = 137/263 (52%), Gaps = 11/263 (4%)
Query: 13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKR-RDAFESIGVKVLSDNNAXXXX 71
+G IG GKMA +I KG+ ++ P + I + S+L+R ++ E + + +
Sbjct: 6 IGIIGVGKMASAIIKGLKQT---PHELIISG--SSLERSKEIAEQLALPYAMSHQDLIDQ 60
Query: 72 XXXXXXXXXXXXXXXXAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHSR-FIRVMPNTP 130
++PL K+ ++S+AAG+ L+ L + G +R+MPN
Sbjct: 61 VDLVILGIKPQLFETV---LKPL-HFKQPIISMAAGISLQRLATFVGQDLPLLRIMPNMN 116
Query: 131 SAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIFLAI 190
+ + +++T ++ ++E + L S G + EK FD T L+GS PAYI+L I
Sbjct: 117 AQILQSSTALTGNALVSQELQARVRDLTDSFGSTFDISEKDFDTFTALAGSSPAYIYLFI 176
Query: 191 EALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHEL 250
EALA GV G+P+ AL + +QTVL +AS + S + P D + SPGGTTIAG+ EL
Sbjct: 177 EALAKAGVKNGIPKAKALEIVTQTVLASASNLKTSSQSPHDFIDAICSPGGTTIAGLMEL 236
Query: 251 EKSGFRGILMNAVVAAAKRSREL 273
E+ G + +A+ +++ L
Sbjct: 237 ERLGLTATVSSAIDKTIDKAKSL 259
>pdb|2AHR|A Chain A, Crystal Structures Of 1-Pyrroline-5-Carboxylate Reductase
From Human Pathogen Streptococcus Pyogenes
pdb|2AHR|B Chain B, Crystal Structures Of 1-Pyrroline-5-Carboxylate Reductase
From Human Pathogen Streptococcus Pyogenes
pdb|2AHR|C Chain C, Crystal Structures Of 1-Pyrroline-5-Carboxylate Reductase
From Human Pathogen Streptococcus Pyogenes
pdb|2AHR|D Chain D, Crystal Structures Of 1-Pyrroline-5-Carboxylate Reductase
From Human Pathogen Streptococcus Pyogenes
pdb|2AHR|E Chain E, Crystal Structures Of 1-Pyrroline-5-Carboxylate Reductase
From Human Pathogen Streptococcus Pyogenes
Length = 259
Score = 118 bits (295), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 105/184 (57%), Gaps = 2/184 (1%)
Query: 91 IRPLLSRKKLLVSVAAGVKLKDLQEWTGHSR-FIRVMPNTPSAVGEAATVMSLGGTATEE 149
++PL K+ ++S AAG+ L+ L + G +R+ PN + + +++T ++ ++E
Sbjct: 77 LKPL-HFKQPIISXAAGISLQRLATFVGQDLPLLRIXPNXNAQILQSSTALTGNALVSQE 135
Query: 150 DGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALG 209
+ L S G + EK FD T L+GS PAYI+L IEALA GV G+P+ AL
Sbjct: 136 LQARVRDLTDSFGSTFDISEKDFDTFTALAGSSPAYIYLFIEALAKAGVKNGIPKAKALE 195
Query: 210 LASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAAAKR 269
+ +QTVL +AS + S + P D + SPGGTTIAG+ ELE+ G + +A+ +
Sbjct: 196 IVTQTVLASASNLKTSSQSPHDFIDAICSPGGTTIAGLXELERLGLTATVSSAIDKTIDK 255
Query: 270 SREL 273
++ L
Sbjct: 256 AKSL 259
>pdb|1YQG|A Chain A, Crystal Structure Of A Pyrroline-5-Carboxylate Reductase
From Neisseria Meningitides Mc58
pdb|2AG8|A Chain A, Nadp Complex Of Pyrroline-5-Carboxylate Reductase From
Neisseria Meningitidis
Length = 263
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 91/175 (52%), Gaps = 2/175 (1%)
Query: 100 LLVSVAAGVKLKDLQEWTGHSR-FIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLF 158
L++SVAAG+ + L + G +R +RV PNTP +G + +E D + ++
Sbjct: 83 LVLSVAAGLSVGTLSRYLGGTRRIVRVXPNTPGKIGLGVSGXYAEAEVSETDRRIADRIX 142
Query: 159 GSVG-KIWRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLG 217
SVG +W DE+ ITG+SGSGPAY+F ++AL + + G A L+ T G
Sbjct: 143 KSVGLTVWLDDEEKXHGITGISGSGPAYVFYLLDALQNAAIRQGFDXAEARALSLATFKG 202
Query: 218 AASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAAAKRSRE 272
A ++ ++G+ +L+ +V S GGTT + + + V A +RS+E
Sbjct: 203 AVALAEQTGEDFEKLQKNVTSKGGTTHEAVEAFRRHRVAEAISEGVCACVRRSQE 257
>pdb|3MWB|A Chain A, The Crystal Structure Of Prephenate Dehydratase In Complex
With L-Phe From Arthrobacter Aurescens To 2.0a
pdb|3MWB|B Chain B, The Crystal Structure Of Prephenate Dehydratase In Complex
With L-Phe From Arthrobacter Aurescens To 2.0a
Length = 313
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 46/109 (42%), Gaps = 9/109 (8%)
Query: 113 LQEWTGHSRFIRVMP---NTPSAVGE-----AATVMSLGGTATEEDGELIGKLFGSVGKI 164
L E TG + V+P + P A+ E A+ ++L + G+ +G F S+
Sbjct: 193 LPERTGADKTTVVVPLPEDHPGALXEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDAD 252
Query: 165 WRA-DEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLAS 212
A D ++ DA+ GL PA FL A AD A P AS
Sbjct: 253 GHATDSRVADALAGLHRISPATRFLGSYARADKQPAVVAPHTSDAAFAS 301
>pdb|2QX3|A Chain A, Structure Of Pectate Lyase Ii From Xanthomonas Campestris
Pv. Campestris Str. Atcc 33913
pdb|2QX3|B Chain B, Structure Of Pectate Lyase Ii From Xanthomonas Campestris
Pv. Campestris Str. Atcc 33913
Length = 330
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%)
Query: 123 IRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSG 182
IRV+ N + + + T+ L G + L G G KIW +F ++T SG+G
Sbjct: 88 IRVVGNAHNVIIQNMTIGLLQGGEDADSISLEGNSSGEPSKIWVDHNTVFASLTKCSGAG 147
Query: 183 PA 184
A
Sbjct: 148 DA 149
>pdb|2QXZ|A Chain A, Pectate Lyase R236f From Xanthomonas Campestris
pdb|2QXZ|B Chain B, Pectate Lyase R236f From Xanthomonas Campestris
Length = 330
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%)
Query: 123 IRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSG 182
IRV+ N + + + T+ L G + L G G KIW +F ++T SG+G
Sbjct: 88 IRVVGNAHNVIIQNMTIGLLQGGEDADSISLEGNSSGEPSKIWVDHNTVFASLTKCSGAG 147
Query: 183 PA 184
A
Sbjct: 148 DA 149
>pdb|2QY1|A Chain A, Pectate Lyase A31g/r236f From Xanthomonas Campestris
pdb|2QY1|B Chain B, Pectate Lyase A31g/r236f From Xanthomonas Campestris
Length = 330
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%)
Query: 123 IRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSG 182
IRV+ N + + + T+ L G + L G G KIW +F ++T SG+G
Sbjct: 88 IRVVGNAHNVIIQNMTIGLLQGGEDADSISLEGNSSGEPSKIWVDHNTVFASLTKCSGAG 147
Query: 183 PA 184
A
Sbjct: 148 DA 149
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,263,492
Number of Sequences: 62578
Number of extensions: 279468
Number of successful extensions: 687
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 663
Number of HSP's gapped (non-prelim): 17
length of query: 274
length of database: 14,973,337
effective HSP length: 97
effective length of query: 177
effective length of database: 8,903,271
effective search space: 1575878967
effective search space used: 1575878967
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)