Query 024016
Match_columns 274
No_of_seqs 279 out of 2208
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 08:18:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024016.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024016hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0345 ProC Pyrroline-5-carbo 100.0 6.9E-55 1.5E-59 362.6 32.1 263 10-274 1-264 (266)
2 PRK12491 pyrroline-5-carboxyla 100.0 2.8E-54 6E-59 366.4 32.7 263 11-274 3-267 (272)
3 PTZ00431 pyrroline carboxylate 100.0 3.7E-49 8.1E-54 334.1 30.8 259 8-274 1-260 (260)
4 PRK06928 pyrroline-5-carboxyla 100.0 1E-48 2.2E-53 334.2 29.7 262 11-274 2-267 (277)
5 PLN02688 pyrroline-5-carboxyla 100.0 4.1E-48 8.9E-53 329.8 33.2 264 11-274 1-264 (266)
6 PRK07679 pyrroline-5-carboxyla 100.0 7E-48 1.5E-52 330.0 32.4 266 8-274 1-269 (279)
7 PRK11880 pyrroline-5-carboxyla 100.0 3.3E-45 7.1E-50 312.1 31.9 261 10-274 2-265 (267)
8 PRK07680 late competence prote 100.0 5.2E-44 1.1E-48 305.3 31.8 259 11-272 1-262 (273)
9 TIGR00112 proC pyrroline-5-car 100.0 6.3E-44 1.4E-48 299.4 28.1 241 31-272 3-245 (245)
10 KOG3124 Pyrroline-5-carboxylat 100.0 4.9E-44 1.1E-48 288.6 24.1 263 11-274 1-265 (267)
11 PRK06476 pyrroline-5-carboxyla 100.0 9.4E-42 2E-46 289.2 29.0 250 11-272 1-255 (258)
12 PRK07634 pyrroline-5-carboxyla 100.0 6.2E-41 1.4E-45 282.3 28.7 241 8-251 2-245 (245)
13 TIGR00465 ilvC ketol-acid redu 100.0 5.8E-32 1.2E-36 233.0 23.3 220 9-240 2-241 (314)
14 COG2084 MmsB 3-hydroxyisobutyr 100.0 7.6E-29 1.6E-33 208.5 22.6 250 11-274 1-272 (286)
15 PRK06545 prephenate dehydrogen 100.0 1.2E-27 2.6E-32 211.5 19.3 247 11-272 1-274 (359)
16 PRK07417 arogenate dehydrogena 100.0 3.9E-27 8.5E-32 201.7 20.0 250 11-272 1-272 (279)
17 PRK14806 bifunctional cyclohex 100.0 2.1E-27 4.6E-32 228.6 20.3 249 11-272 4-279 (735)
18 PRK08507 prephenate dehydrogen 100.0 2.2E-26 4.7E-31 196.8 22.8 248 11-272 1-270 (275)
19 KOG0409 Predicted dehydrogenas 99.9 4.3E-26 9.3E-31 188.6 21.5 251 9-273 34-306 (327)
20 PRK08655 prephenate dehydrogen 99.9 6.6E-26 1.4E-30 204.6 23.5 248 11-271 1-268 (437)
21 PRK07502 cyclohexadienyl dehyd 99.9 2E-25 4.4E-30 193.8 21.2 259 4-272 1-283 (307)
22 PRK15461 NADH-dependent gamma- 99.9 1.5E-24 3.3E-29 187.1 24.0 251 11-273 2-272 (296)
23 PRK15059 tartronate semialdehy 99.9 2.4E-24 5.3E-29 185.1 24.9 248 11-274 1-270 (292)
24 PLN02256 arogenate dehydrogena 99.9 1.7E-24 3.6E-29 186.4 21.0 245 8-269 34-296 (304)
25 COG0287 TyrA Prephenate dehydr 99.9 1.3E-23 2.8E-28 177.9 22.6 252 9-272 2-274 (279)
26 PLN02350 phosphogluconate dehy 99.9 5.4E-23 1.2E-27 186.4 23.1 231 9-252 5-265 (493)
27 TIGR01692 HIBADH 3-hydroxyisob 99.9 6E-23 1.3E-27 176.7 22.3 248 15-274 1-274 (288)
28 PRK11199 tyrA bifunctional cho 99.9 5.9E-23 1.3E-27 182.2 21.8 234 9-271 97-347 (374)
29 PRK05479 ketol-acid reductoiso 99.9 2.4E-22 5.1E-27 173.1 23.2 206 8-224 15-241 (330)
30 TIGR01505 tartro_sem_red 2-hyd 99.9 4.6E-22 9.9E-27 171.6 23.9 247 12-274 1-270 (291)
31 PLN02858 fructose-bisphosphate 99.9 3E-22 6.5E-27 200.7 25.3 251 9-273 3-277 (1378)
32 PRK12490 6-phosphogluconate de 99.9 4.9E-22 1.1E-26 171.8 22.5 193 11-213 1-211 (299)
33 PF03446 NAD_binding_2: NAD bi 99.9 2.5E-23 5.3E-28 164.3 12.5 151 10-169 1-163 (163)
34 PF14748 P5CR_dimer: Pyrroline 99.9 9.2E-23 2E-27 148.7 14.0 107 167-273 1-107 (107)
35 PRK11559 garR tartronate semia 99.9 3E-21 6.4E-26 167.0 24.8 249 10-274 2-273 (296)
36 TIGR00872 gnd_rel 6-phosphoglu 99.9 1.9E-20 4.2E-25 161.8 25.9 194 11-214 1-211 (298)
37 PRK09599 6-phosphogluconate de 99.9 5.2E-21 1.1E-25 165.6 22.3 194 11-214 1-213 (301)
38 PTZ00142 6-phosphogluconate de 99.9 3.8E-20 8.2E-25 167.7 26.0 192 11-212 2-219 (470)
39 PLN02712 arogenate dehydrogena 99.9 5.8E-21 1.3E-25 179.9 20.7 243 9-268 368-628 (667)
40 PLN02858 fructose-bisphosphate 99.9 2E-20 4.3E-25 187.7 24.6 250 9-273 323-597 (1378)
41 PRK07531 bifunctional 3-hydrox 99.9 1.1E-19 2.3E-24 167.2 27.3 192 10-214 4-220 (495)
42 PRK08818 prephenate dehydrogen 99.9 1.5E-20 3.2E-25 165.0 20.2 238 9-272 3-267 (370)
43 PRK06130 3-hydroxybutyryl-CoA 99.9 5.4E-20 1.2E-24 160.2 21.8 193 10-214 4-219 (311)
44 TIGR00873 gnd 6-phosphoglucona 99.9 1.8E-19 3.8E-24 163.4 24.3 191 12-212 1-216 (467)
45 PRK05808 3-hydroxybutyryl-CoA 99.8 4.7E-19 1E-23 152.1 22.1 154 8-168 1-182 (282)
46 PLN02712 arogenate dehydrogena 99.8 4.3E-19 9.4E-24 167.3 23.3 239 9-267 51-310 (667)
47 PRK00094 gpsA NAD(P)H-dependen 99.8 8.7E-19 1.9E-23 153.5 22.8 194 11-211 2-239 (325)
48 PF02153 PDH: Prephenate dehyd 99.8 1E-19 2.3E-24 153.9 15.7 225 25-260 1-245 (258)
49 PRK06129 3-hydroxyacyl-CoA deh 99.8 1.6E-18 3.5E-23 150.6 23.2 217 11-245 3-247 (308)
50 PRK12557 H(2)-dependent methyl 99.8 1.8E-18 3.9E-23 151.0 19.7 208 11-227 1-253 (342)
51 PRK14618 NAD(P)H-dependent gly 99.8 5.8E-18 1.3E-22 148.5 21.4 195 9-212 3-239 (328)
52 PLN02545 3-hydroxybutyryl-CoA 99.8 1.1E-17 2.4E-22 144.6 22.0 155 9-169 3-184 (295)
53 PRK07530 3-hydroxybutyryl-CoA 99.8 1.3E-17 2.8E-22 143.9 21.0 155 8-169 2-184 (292)
54 TIGR01915 npdG NADPH-dependent 99.8 2.5E-18 5.4E-23 142.2 15.6 151 11-169 1-189 (219)
55 PRK06035 3-hydroxyacyl-CoA deh 99.8 2.3E-17 5E-22 142.3 21.7 154 9-169 2-186 (291)
56 PRK08293 3-hydroxybutyryl-CoA 99.8 4.5E-17 9.7E-22 140.2 22.7 159 9-173 2-189 (287)
57 PF03807 F420_oxidored: NADP o 99.8 6.1E-19 1.3E-23 126.9 8.6 94 12-107 1-96 (96)
58 PRK09260 3-hydroxybutyryl-CoA 99.8 4.3E-17 9.4E-22 140.4 21.1 153 11-169 2-182 (288)
59 TIGR01724 hmd_rel H2-forming N 99.8 1.1E-16 2.5E-21 135.1 20.9 207 11-226 1-252 (341)
60 PF10727 Rossmann-like: Rossma 99.8 1E-18 2.2E-23 130.7 7.1 115 9-127 9-127 (127)
61 PRK12439 NAD(P)H-dependent gly 99.8 4.3E-16 9.2E-21 137.1 23.6 158 6-170 3-184 (341)
62 PRK06522 2-dehydropantoate 2-r 99.8 4.5E-16 9.7E-21 135.1 23.3 167 11-184 1-201 (304)
63 PRK09287 6-phosphogluconate de 99.8 5.3E-16 1.1E-20 140.3 24.0 182 21-212 1-208 (459)
64 PRK14619 NAD(P)H-dependent gly 99.7 1.2E-16 2.5E-21 138.9 18.4 182 9-210 3-214 (308)
65 PRK08268 3-hydroxy-acyl-CoA de 99.7 1.2E-15 2.6E-20 140.4 24.7 192 10-216 7-227 (507)
66 COG0240 GpsA Glycerol-3-phosph 99.7 1.2E-15 2.5E-20 130.1 22.5 155 10-170 1-178 (329)
67 PRK07066 3-hydroxybutyryl-CoA 99.7 9.3E-16 2E-20 132.7 21.8 155 8-168 5-183 (321)
68 PRK14620 NAD(P)H-dependent gly 99.7 3E-15 6.5E-20 131.2 23.0 154 11-170 1-179 (326)
69 TIGR02279 PaaC-3OHAcCoADH 3-hy 99.7 1.5E-15 3.1E-20 139.4 21.7 154 9-169 4-185 (503)
70 PRK07819 3-hydroxybutyryl-CoA 99.7 3E-15 6.5E-20 128.5 22.3 152 11-169 6-187 (286)
71 TIGR03026 NDP-sugDHase nucleot 99.7 5.5E-16 1.2E-20 139.9 18.5 189 11-212 1-244 (411)
72 COG1023 Gnd Predicted 6-phosph 99.7 1.2E-14 2.6E-19 116.9 23.2 220 11-240 1-244 (300)
73 PRK11064 wecC UDP-N-acetyl-D-m 99.7 1.1E-15 2.3E-20 137.7 18.6 192 8-212 1-248 (415)
74 PRK08229 2-dehydropantoate 2-r 99.7 2.2E-15 4.9E-20 132.8 19.9 147 10-168 2-176 (341)
75 PRK06249 2-dehydropantoate 2-r 99.7 2.9E-14 6.3E-19 124.2 24.6 170 8-184 3-213 (313)
76 PRK13403 ketol-acid reductoiso 99.7 2E-14 4.4E-19 122.5 20.9 207 8-226 14-241 (335)
77 COG2085 Predicted dinucleotide 99.7 3E-15 6.6E-20 119.5 14.5 151 10-168 1-179 (211)
78 PRK12921 2-dehydropantoate 2-r 99.7 7.1E-14 1.5E-18 121.4 24.4 154 11-170 1-177 (305)
79 PTZ00345 glycerol-3-phosphate 99.7 3.5E-14 7.7E-19 124.9 22.0 155 9-170 10-203 (365)
80 PF01210 NAD_Gly3P_dh_N: NAD-d 99.7 1.6E-15 3.4E-20 118.9 12.1 121 12-137 1-143 (157)
81 PF02737 3HCDH_N: 3-hydroxyacy 99.7 4.3E-15 9.2E-20 118.9 14.8 149 12-167 1-177 (180)
82 TIGR03376 glycerol3P_DH glycer 99.6 6.4E-14 1.4E-18 122.5 21.1 153 12-170 1-194 (342)
83 COG1893 ApbA Ketopantoate redu 99.6 3.3E-13 7.2E-18 116.6 23.3 248 11-270 1-299 (307)
84 PRK06444 prephenate dehydrogen 99.6 3.4E-14 7.3E-19 114.5 15.2 183 11-251 1-189 (197)
85 PRK15182 Vi polysaccharide bio 99.6 9.5E-14 2.1E-18 125.2 18.6 190 10-211 6-243 (425)
86 PRK15057 UDP-glucose 6-dehydro 99.6 2.2E-13 4.8E-18 121.4 19.4 186 11-212 1-233 (388)
87 PRK05708 2-dehydropantoate 2-r 99.6 6.1E-13 1.3E-17 115.4 20.3 243 10-265 2-291 (305)
88 COG1250 FadB 3-hydroxyacyl-CoA 99.5 1.1E-12 2.3E-17 112.1 17.8 149 9-164 2-177 (307)
89 TIGR02437 FadB fatty oxidation 99.5 1.7E-12 3.7E-17 124.1 19.9 154 9-169 312-493 (714)
90 PRK11730 fadB multifunctional 99.5 2.1E-12 4.6E-17 123.7 20.2 153 9-168 312-492 (715)
91 COG0059 IlvC Ketol-acid reduct 99.5 7.2E-12 1.6E-16 104.6 20.6 222 9-241 17-267 (338)
92 PRK05225 ketol-acid reductoiso 99.5 5.6E-12 1.2E-16 111.6 20.9 208 9-227 35-269 (487)
93 TIGR02440 FadJ fatty oxidation 99.5 4E-12 8.7E-17 121.4 20.9 154 9-169 303-485 (699)
94 KOG2380 Prephenate dehydrogena 99.5 1E-12 2.2E-17 110.9 14.7 164 9-179 51-230 (480)
95 COG0362 Gnd 6-phosphogluconate 99.5 2.6E-12 5.6E-17 110.6 17.3 194 9-212 2-220 (473)
96 PF07991 IlvN: Acetohydroxy ac 99.5 2.3E-13 5E-18 104.4 8.8 146 9-162 3-160 (165)
97 TIGR02441 fa_ox_alpha_mit fatt 99.5 7.9E-12 1.7E-16 119.8 21.1 154 9-169 334-515 (737)
98 PRK11154 fadJ multifunctional 99.5 7.2E-12 1.6E-16 120.0 20.1 153 9-168 308-489 (708)
99 PRK11861 bifunctional prephena 99.5 1.8E-12 4E-17 123.6 15.5 190 75-272 1-213 (673)
100 PF02558 ApbA: Ketopantoate re 99.4 3.5E-12 7.5E-17 99.3 11.0 108 13-126 1-123 (151)
101 PLN02353 probable UDP-glucose 99.3 1.9E-10 4E-15 104.9 18.8 195 10-211 1-251 (473)
102 PRK08269 3-hydroxybutyryl-CoA 99.3 2.5E-10 5.3E-15 99.3 18.1 181 21-214 1-218 (314)
103 COG5495 Uncharacterized conser 99.2 8.2E-10 1.8E-14 88.7 15.8 245 1-257 1-258 (289)
104 COG1004 Ugd Predicted UDP-gluc 99.2 3.4E-09 7.3E-14 92.3 20.5 244 11-271 1-295 (414)
105 PF03721 UDPG_MGDP_dh_N: UDP-g 99.2 7.6E-11 1.6E-15 94.7 8.7 94 11-110 1-124 (185)
106 PRK12480 D-lactate dehydrogena 99.2 2.7E-10 5.8E-15 99.7 12.2 104 6-118 142-249 (330)
107 KOG2304 3-hydroxyacyl-CoA dehy 99.1 2.2E-10 4.8E-15 91.8 8.7 155 5-165 6-192 (298)
108 PRK07574 formate dehydrogenase 99.1 4.1E-10 8.9E-15 99.9 11.2 107 7-118 189-299 (385)
109 cd01065 NAD_bind_Shikimate_DH 99.1 1.3E-10 2.8E-15 90.8 7.0 93 8-106 17-117 (155)
110 PLN03139 formate dehydrogenase 99.1 6E-10 1.3E-14 98.8 11.5 107 7-118 196-306 (386)
111 PRK13243 glyoxylate reductase; 99.1 8E-10 1.7E-14 96.9 11.5 106 6-118 146-255 (333)
112 TIGR00745 apbA_panE 2-dehydrop 99.1 5.2E-08 1.1E-12 84.0 22.1 154 20-181 1-191 (293)
113 PRK13302 putative L-aspartate 99.1 1.1E-09 2.4E-14 93.3 9.8 89 8-104 4-97 (271)
114 COG4007 Predicted dehydrogenas 99.0 1.3E-07 2.8E-12 77.5 21.0 156 10-171 1-197 (340)
115 KOG2653 6-phosphogluconate deh 99.0 6E-08 1.3E-12 82.9 19.5 194 10-212 6-224 (487)
116 COG0677 WecC UDP-N-acetyl-D-ma 99.0 4.1E-08 8.9E-13 85.4 18.5 191 11-211 10-250 (436)
117 PRK08605 D-lactate dehydrogena 99.0 1.1E-09 2.5E-14 95.9 8.8 105 6-118 142-251 (332)
118 KOG2711 Glycerol-3-phosphate d 99.0 8.1E-09 1.8E-13 87.8 13.5 151 9-163 20-209 (372)
119 PRK13304 L-aspartate dehydroge 99.0 2.4E-09 5.1E-14 91.1 10.5 80 11-93 2-83 (265)
120 PF02826 2-Hacid_dh_C: D-isome 99.0 1.2E-09 2.6E-14 87.4 7.6 107 6-118 32-142 (178)
121 TIGR02853 spore_dpaA dipicolin 98.9 7.6E-09 1.6E-13 88.8 10.9 93 6-106 147-241 (287)
122 PRK06436 glycerate dehydrogena 98.9 5.4E-09 1.2E-13 90.2 9.6 101 7-118 119-224 (303)
123 TIGR01327 PGDH D-3-phosphoglyc 98.9 7.5E-09 1.6E-13 96.1 11.1 107 6-118 134-244 (525)
124 PRK15469 ghrA bifunctional gly 98.9 5.8E-09 1.3E-13 90.5 9.6 104 8-118 134-241 (312)
125 PRK13581 D-3-phosphoglycerate 98.9 1.1E-08 2.3E-13 95.1 10.9 105 7-118 137-245 (526)
126 PRK06141 ornithine cyclodeamin 98.8 1.8E-08 3.9E-13 87.8 8.9 87 9-103 124-217 (314)
127 PF01408 GFO_IDH_MocA: Oxidore 98.8 6.1E-08 1.3E-12 72.2 10.7 100 11-116 1-105 (120)
128 PLN02928 oxidoreductase family 98.8 4.5E-08 9.7E-13 86.3 10.1 106 7-118 156-277 (347)
129 PRK14194 bifunctional 5,10-met 98.8 1.9E-08 4.1E-13 85.8 7.4 74 7-105 156-231 (301)
130 PRK08306 dipicolinate synthase 98.8 7.6E-08 1.7E-12 83.1 11.0 94 5-106 147-242 (296)
131 cd05213 NAD_bind_Glutamyl_tRNA 98.8 6.6E-08 1.4E-12 84.2 10.7 95 9-107 177-275 (311)
132 cd01075 NAD_bind_Leu_Phe_Val_D 98.8 2.2E-07 4.7E-12 75.7 12.7 92 5-107 23-117 (200)
133 PRK00257 erythronate-4-phospha 98.7 5E-08 1.1E-12 86.6 9.2 103 6-118 112-222 (381)
134 COG0111 SerA Phosphoglycerate 98.7 6.2E-08 1.3E-12 84.3 9.5 106 7-118 139-248 (324)
135 PRK15409 bifunctional glyoxyla 98.7 1.3E-07 2.8E-12 82.6 11.2 106 6-118 141-251 (323)
136 COG1052 LdhA Lactate dehydroge 98.7 1.6E-07 3.5E-12 81.6 10.6 104 8-118 144-251 (324)
137 TIGR02371 ala_DH_arch alanine 98.7 1.2E-07 2.7E-12 82.9 9.8 90 9-105 127-222 (325)
138 PRK11790 D-3-phosphoglycerate 98.7 1.6E-07 3.5E-12 84.6 10.4 104 6-118 147-254 (409)
139 PRK15438 erythronate-4-phospha 98.7 1.4E-07 3E-12 83.6 9.6 104 5-118 111-222 (378)
140 smart00859 Semialdhyde_dh Semi 98.7 1.2E-07 2.6E-12 71.0 7.8 94 12-109 1-103 (122)
141 COG1712 Predicted dinucleotide 98.6 2.4E-07 5.3E-12 74.6 9.4 91 11-104 1-92 (255)
142 PRK08410 2-hydroxyacid dehydro 98.6 2.4E-07 5.3E-12 80.5 9.8 102 7-118 142-247 (311)
143 KOG0069 Glyoxylate/hydroxypyru 98.6 2.7E-07 6E-12 79.7 9.6 103 10-118 162-268 (336)
144 PRK14188 bifunctional 5,10-met 98.6 1.4E-07 3.1E-12 80.7 7.3 72 7-104 155-229 (296)
145 KOG2305 3-hydroxyacyl-CoA dehy 98.6 3.1E-07 6.7E-12 74.1 8.4 149 9-163 2-178 (313)
146 PF01488 Shikimate_DH: Shikima 98.6 1.7E-07 3.7E-12 71.5 6.4 70 9-82 11-86 (135)
147 PLN02306 hydroxypyruvate reduc 98.5 8.1E-07 1.8E-11 79.2 11.3 108 6-118 161-287 (386)
148 PF01113 DapB_N: Dihydrodipico 98.5 2.2E-07 4.8E-12 69.7 6.1 97 11-114 1-107 (124)
149 PRK06932 glycerate dehydrogena 98.5 4E-07 8.6E-12 79.3 8.4 101 7-118 144-248 (314)
150 PRK00048 dihydrodipicolinate r 98.5 4.7E-07 1E-11 76.7 8.5 98 11-115 2-101 (257)
151 PRK06487 glycerate dehydrogena 98.5 6.6E-07 1.4E-11 78.0 9.5 100 7-118 145-248 (317)
152 TIGR01723 hmd_TIGR 5,10-methen 98.5 1.2E-05 2.6E-10 66.9 15.4 163 58-226 126-299 (340)
153 PRK13301 putative L-aspartate 98.5 1.1E-06 2.5E-11 73.4 9.3 81 10-93 2-84 (267)
154 PRK07340 ornithine cyclodeamin 98.5 1.5E-06 3.2E-11 75.4 10.4 87 9-104 124-216 (304)
155 PF00056 Ldh_1_N: lactate/mala 98.4 2.2E-06 4.8E-11 65.7 9.8 95 11-109 1-122 (141)
156 PLN00203 glutamyl-tRNA reducta 98.4 1.6E-06 3.6E-11 80.0 10.5 96 8-107 264-371 (519)
157 TIGR01921 DAP-DH diaminopimela 98.4 8.1E-07 1.8E-11 76.8 7.8 87 8-104 1-90 (324)
158 PRK00961 H(2)-dependent methyl 98.4 2E-05 4.4E-10 65.4 15.2 163 58-226 128-301 (342)
159 PRK08618 ornithine cyclodeamin 98.4 1.9E-06 4.2E-11 75.5 9.9 87 9-104 126-220 (325)
160 cd05291 HicDH_like L-2-hydroxy 98.4 1.9E-06 4.1E-11 74.9 9.8 95 11-109 1-121 (306)
161 PRK13303 L-aspartate dehydroge 98.4 1.5E-06 3.3E-11 73.9 8.1 89 11-105 2-92 (265)
162 PRK06823 ornithine cyclodeamin 98.4 3.1E-06 6.7E-11 73.6 10.1 90 9-105 127-222 (315)
163 PRK06223 malate dehydrogenase; 98.4 2.8E-06 6.1E-11 73.9 9.8 94 10-109 2-123 (307)
164 TIGR01763 MalateDH_bact malate 98.4 4E-06 8.7E-11 72.7 10.7 94 11-110 2-123 (305)
165 COG0373 HemA Glutamyl-tRNA red 98.4 2.5E-06 5.4E-11 75.9 9.4 94 9-107 177-276 (414)
166 PTZ00075 Adenosylhomocysteinas 98.4 2.4E-06 5.3E-11 77.3 9.4 92 7-107 251-343 (476)
167 PRK00045 hemA glutamyl-tRNA re 98.4 1.5E-06 3.3E-11 78.9 8.1 95 9-107 181-282 (423)
168 PF01118 Semialdhyde_dh: Semia 98.3 8E-07 1.7E-11 66.4 5.2 90 12-108 1-100 (121)
169 PRK06407 ornithine cyclodeamin 98.3 3.4E-06 7.3E-11 73.0 9.6 89 9-104 116-211 (301)
170 PF00670 AdoHcyase_NAD: S-aden 98.3 5.3E-06 1.2E-10 64.4 9.7 98 9-116 22-124 (162)
171 PRK14179 bifunctional 5,10-met 98.3 1.4E-06 3.1E-11 73.9 7.0 73 7-104 155-229 (284)
172 TIGR01035 hemA glutamyl-tRNA r 98.3 3.4E-06 7.4E-11 76.4 9.9 95 9-107 179-279 (417)
173 PRK07589 ornithine cyclodeamin 98.3 3E-06 6.5E-11 74.5 9.0 91 9-104 128-224 (346)
174 PRK06046 alanine dehydrogenase 98.3 3.6E-06 7.8E-11 73.8 9.4 89 9-105 128-223 (326)
175 PRK08300 acetaldehyde dehydrog 98.3 5.1E-06 1.1E-10 71.2 9.9 92 8-105 2-101 (302)
176 COG0569 TrkA K+ transport syst 98.3 8.3E-06 1.8E-10 67.6 10.9 87 11-102 1-98 (225)
177 TIGR02992 ectoine_eutC ectoine 98.3 5.5E-06 1.2E-10 72.7 10.2 88 9-104 128-223 (326)
178 PRK05476 S-adenosyl-L-homocyst 98.3 6.2E-06 1.4E-10 74.2 10.3 89 8-105 210-299 (425)
179 cd05292 LDH_2 A subgroup of L- 98.3 5.3E-06 1.2E-10 72.1 9.4 67 11-80 1-76 (308)
180 PRK00066 ldh L-lactate dehydro 98.3 8.3E-06 1.8E-10 71.1 10.5 97 9-109 5-126 (315)
181 PF02423 OCD_Mu_crystall: Orni 98.3 2.1E-06 4.5E-11 74.8 6.7 92 9-105 127-224 (313)
182 TIGR00936 ahcY adenosylhomocys 98.2 8.5E-06 1.8E-10 72.9 10.4 100 8-116 193-296 (406)
183 TIGR00507 aroE shikimate 5-deh 98.2 4.2E-06 9E-11 71.5 8.2 93 9-106 116-215 (270)
184 TIGR00036 dapB dihydrodipicoli 98.2 8.2E-06 1.8E-10 69.4 9.6 99 11-116 2-110 (266)
185 COG2423 Predicted ornithine cy 98.2 8.3E-06 1.8E-10 70.9 9.5 90 9-105 129-225 (330)
186 PLN02494 adenosylhomocysteinas 98.2 7E-06 1.5E-10 74.2 9.3 101 8-116 252-355 (477)
187 PRK13940 glutamyl-tRNA reducta 98.2 4.1E-06 8.8E-11 75.5 7.8 69 9-81 180-252 (414)
188 cd00401 AdoHcyase S-adenosyl-L 98.2 1.2E-05 2.5E-10 72.3 10.2 89 8-105 200-289 (413)
189 PRK04207 glyceraldehyde-3-phos 98.2 1.3E-05 2.9E-10 70.5 10.4 89 10-104 1-108 (341)
190 PTZ00117 malate dehydrogenase; 98.2 7.8E-06 1.7E-10 71.4 8.7 95 9-109 4-126 (319)
191 COG0673 MviM Predicted dehydro 98.2 9E-06 1.9E-10 71.6 8.9 90 8-102 1-95 (342)
192 PRK08291 ectoine utilization p 98.2 1.1E-05 2.3E-10 71.0 9.2 88 9-104 131-226 (330)
193 COG1748 LYS9 Saccharopine dehy 98.2 7.9E-06 1.7E-10 72.4 8.0 89 10-106 1-100 (389)
194 cd00650 LDH_MDH_like NAD-depen 98.1 1.7E-05 3.6E-10 67.5 9.7 95 13-109 1-123 (263)
195 cd05297 GH4_alpha_glucosidase_ 98.1 3.6E-06 7.8E-11 76.4 5.5 68 11-83 1-86 (423)
196 PRK04148 hypothetical protein; 98.1 1.7E-05 3.7E-10 59.7 8.1 93 9-107 16-113 (134)
197 PRK00258 aroE shikimate 5-dehy 98.1 9.6E-06 2.1E-10 69.5 7.7 94 8-105 121-221 (278)
198 PTZ00082 L-lactate dehydrogena 98.1 1.6E-05 3.5E-10 69.4 9.2 95 9-109 5-132 (321)
199 cd01078 NAD_bind_H4MPT_DH NADP 98.1 1.2E-05 2.6E-10 65.1 7.6 91 8-105 26-129 (194)
200 cd05293 LDH_1 A subgroup of L- 98.1 3E-05 6.5E-10 67.5 10.0 95 10-109 3-124 (312)
201 PRK09496 trkA potassium transp 98.1 2.9E-05 6.3E-10 71.2 10.1 75 11-90 1-84 (453)
202 PRK06199 ornithine cyclodeamin 98.1 2.1E-05 4.6E-10 70.2 8.8 91 9-103 154-257 (379)
203 TIGR00518 alaDH alanine dehydr 98.0 2.2E-05 4.7E-10 70.0 8.6 91 10-105 167-267 (370)
204 PRK00436 argC N-acetyl-gamma-g 98.0 9.1E-05 2E-09 65.4 12.2 94 10-110 2-104 (343)
205 TIGR03215 ac_ald_DH_ac acetald 98.0 4.4E-05 9.4E-10 65.3 9.4 88 11-104 2-94 (285)
206 cd05290 LDH_3 A subgroup of L- 98.0 5.1E-05 1.1E-09 65.9 9.5 94 12-109 1-123 (307)
207 PF02254 TrkA_N: TrkA-N domain 98.0 0.00012 2.7E-09 53.9 10.2 89 13-106 1-97 (116)
208 cd05191 NAD_bind_amino_acid_DH 98.0 5.4E-05 1.2E-09 52.8 7.8 64 8-104 21-85 (86)
209 PRK12549 shikimate 5-dehydroge 98.0 3.4E-05 7.3E-10 66.3 8.0 70 9-82 126-203 (284)
210 TIGR01850 argC N-acetyl-gamma- 98.0 0.00013 2.8E-09 64.5 11.8 101 11-118 1-115 (346)
211 PRK11579 putative oxidoreducta 97.9 0.00012 2.7E-09 64.7 11.7 84 10-102 4-92 (346)
212 PRK02318 mannitol-1-phosphate 97.9 3E-05 6.5E-10 69.5 7.5 101 11-116 1-134 (381)
213 cd01080 NAD_bind_m-THF_DH_Cycl 97.9 4.3E-05 9.3E-10 60.3 7.3 77 7-107 41-118 (168)
214 PRK09310 aroDE bifunctional 3- 97.9 4.3E-05 9.4E-10 70.4 8.3 71 7-83 329-402 (477)
215 PRK06719 precorrin-2 dehydroge 97.9 5.7E-05 1.2E-09 59.0 7.4 85 1-92 2-91 (157)
216 cd01339 LDH-like_MDH L-lactate 97.9 6.4E-05 1.4E-09 65.2 8.3 91 13-109 1-119 (300)
217 PRK05442 malate dehydrogenase; 97.9 8.2E-05 1.8E-09 65.1 8.8 101 9-110 3-135 (326)
218 PLN02602 lactate dehydrogenase 97.8 0.00015 3.2E-09 64.0 10.3 96 11-110 38-159 (350)
219 PRK15076 alpha-galactosidase; 97.8 0.00012 2.6E-09 66.5 9.8 68 11-80 2-84 (431)
220 cd00300 LDH_like L-lactate deh 97.8 7.7E-05 1.7E-09 64.7 8.2 93 13-109 1-119 (300)
221 TIGR01761 thiaz-red thiazoliny 97.8 0.00034 7.3E-09 61.6 12.2 99 9-116 2-107 (343)
222 TIGR02354 thiF_fam2 thiamine b 97.8 0.00016 3.5E-09 58.8 9.3 35 9-47 20-54 (200)
223 PF13380 CoA_binding_2: CoA bi 97.8 0.0001 2.3E-09 54.5 7.6 94 11-117 1-98 (116)
224 PTZ00325 malate dehydrogenase; 97.8 0.00013 2.8E-09 63.6 8.9 100 6-109 4-129 (321)
225 PRK06718 precorrin-2 dehydroge 97.8 0.00017 3.6E-09 58.9 9.1 79 9-92 9-91 (202)
226 TIGR01809 Shik-DH-AROM shikima 97.8 0.00011 2.4E-09 63.1 8.2 70 9-82 124-201 (282)
227 PRK03659 glutathione-regulated 97.8 0.00034 7.3E-09 66.5 11.9 89 10-104 400-497 (601)
228 TIGR01757 Malate-DH_plant mala 97.8 0.00026 5.7E-09 63.1 10.4 100 10-110 44-175 (387)
229 cd01337 MDH_glyoxysomal_mitoch 97.7 0.00014 3.1E-09 63.1 8.2 96 11-110 1-122 (310)
230 PF13460 NAD_binding_10: NADH( 97.7 0.00011 2.3E-09 58.7 6.9 61 13-80 1-69 (183)
231 TIGR01759 MalateDH-SF1 malate 97.7 0.00037 8E-09 60.9 10.7 101 9-110 2-134 (323)
232 PLN00112 malate dehydrogenase 97.7 0.00029 6.3E-09 63.8 10.2 99 9-110 99-231 (444)
233 PRK10206 putative oxidoreducta 97.7 0.00028 6.2E-09 62.4 10.0 77 11-91 2-84 (344)
234 cd05294 LDH-like_MDH_nadp A la 97.7 0.00016 3.5E-09 62.9 8.2 95 11-110 1-126 (309)
235 PF01262 AlaDh_PNT_C: Alanine 97.7 6.9E-05 1.5E-09 59.3 5.4 98 4-106 14-140 (168)
236 PLN02819 lysine-ketoglutarate 97.7 0.00031 6.8E-09 69.7 10.9 80 10-90 569-667 (1042)
237 PRK10669 putative cation:proto 97.7 0.00041 8.9E-09 65.4 11.4 89 11-105 418-515 (558)
238 cd05311 NAD_bind_2_malic_enz N 97.7 0.00021 4.6E-09 59.3 8.3 96 8-109 23-132 (226)
239 PRK05086 malate dehydrogenase; 97.7 0.00018 3.9E-09 62.7 8.2 95 11-109 1-122 (312)
240 cd01338 MDH_choloroplast_like 97.7 0.00033 7.1E-09 61.3 9.3 99 11-110 3-133 (322)
241 PRK09424 pntA NAD(P) transhydr 97.6 0.00044 9.5E-09 63.8 10.4 91 10-105 165-285 (509)
242 PRK05472 redox-sensing transcr 97.6 5.1E-05 1.1E-09 62.5 3.8 79 9-92 83-167 (213)
243 COG2910 Putative NADH-flavin r 97.6 0.00021 4.6E-09 56.2 7.0 65 11-80 1-71 (211)
244 PRK06349 homoserine dehydrogen 97.6 0.00011 2.5E-09 66.7 6.3 91 8-104 1-103 (426)
245 PRK09496 trkA potassium transp 97.6 0.00071 1.5E-08 62.0 11.4 89 9-102 230-328 (453)
246 PRK00683 murD UDP-N-acetylmura 97.6 0.00018 3.9E-09 65.4 7.3 67 9-80 2-68 (418)
247 COG0039 Mdh Malate/lactate deh 97.6 0.00033 7.2E-09 60.4 8.4 96 11-110 1-123 (313)
248 TIGR00561 pntA NAD(P) transhyd 97.6 0.00047 1E-08 63.5 9.9 92 10-106 164-285 (511)
249 cd00704 MDH Malate dehydrogena 97.6 0.00027 6E-09 61.8 7.8 98 11-109 1-130 (323)
250 COG0169 AroE Shikimate 5-dehyd 97.6 0.00029 6.2E-09 60.2 7.5 93 7-105 123-226 (283)
251 PRK05671 aspartate-semialdehyd 97.6 0.00025 5.5E-09 62.2 7.4 94 9-109 3-101 (336)
252 PRK03562 glutathione-regulated 97.6 0.0006 1.3E-08 65.0 10.4 87 10-102 400-495 (621)
253 TIGR02356 adenyl_thiF thiazole 97.6 0.00052 1.1E-08 56.0 8.7 34 10-47 21-54 (202)
254 PRK14175 bifunctional 5,10-met 97.5 0.00027 5.8E-09 60.3 7.1 74 6-104 154-229 (286)
255 PF02629 CoA_binding: CoA bind 97.5 0.00017 3.7E-09 51.4 5.1 78 10-93 3-84 (96)
256 TIGR01772 MDH_euk_gproteo mala 97.5 0.00037 8E-09 60.6 7.8 95 12-110 1-121 (312)
257 COG4074 Mth H2-forming N5,N10- 97.5 0.0064 1.4E-07 49.3 14.1 166 58-226 126-299 (343)
258 PRK12475 thiamine/molybdopteri 97.5 0.00069 1.5E-08 59.7 9.0 79 10-92 24-137 (338)
259 KOG0068 D-3-phosphoglycerate d 97.5 0.00042 9.1E-09 59.5 7.2 106 5-117 141-250 (406)
260 cd01487 E1_ThiF_like E1_ThiF_l 97.5 0.0012 2.5E-08 52.6 9.3 33 12-48 1-33 (174)
261 TIGR01771 L-LDH-NAD L-lactate 97.5 0.00052 1.1E-08 59.4 7.9 91 15-109 1-117 (299)
262 PRK08664 aspartate-semialdehyd 97.5 0.00054 1.2E-08 60.7 8.2 92 9-107 2-109 (349)
263 PRK14874 aspartate-semialdehyd 97.5 0.00037 8.1E-09 61.3 7.1 93 11-108 2-97 (334)
264 PLN00106 malate dehydrogenase 97.4 0.00079 1.7E-08 58.8 8.7 96 10-109 18-139 (323)
265 COG1064 AdhP Zn-dependent alco 97.4 0.001 2.2E-08 58.0 9.2 86 10-104 167-258 (339)
266 COG0002 ArgC Acetylglutamate s 97.4 0.00063 1.4E-08 58.9 7.5 102 10-118 2-117 (349)
267 KOG2741 Dimeric dihydrodiol de 97.4 0.002 4.3E-08 55.7 10.3 102 10-117 6-116 (351)
268 cd01336 MDH_cytoplasmic_cytoso 97.4 0.00074 1.6E-08 59.2 8.0 98 11-109 3-132 (325)
269 PLN02968 Probable N-acetyl-gam 97.4 0.00088 1.9E-08 59.9 8.4 93 9-109 37-138 (381)
270 TIGR01546 GAPDH-II_archae glyc 97.4 0.00097 2.1E-08 58.2 8.4 67 13-82 1-86 (333)
271 PRK14189 bifunctional 5,10-met 97.4 0.00066 1.4E-08 57.9 7.1 74 7-104 155-229 (285)
272 TIGR01758 MDH_euk_cyt malate d 97.4 0.00057 1.2E-08 59.8 6.9 98 12-110 1-130 (324)
273 PF03435 Saccharop_dh: Sacchar 97.3 0.0005 1.1E-08 61.8 6.8 75 13-90 1-86 (386)
274 PF13241 NAD_binding_7: Putati 97.3 0.0011 2.3E-08 47.9 7.0 76 8-92 5-81 (103)
275 PLN02383 aspartate semialdehyd 97.3 0.00085 1.8E-08 59.2 7.7 96 9-108 6-103 (344)
276 PRK10792 bifunctional 5,10-met 97.3 0.00087 1.9E-08 57.1 7.4 74 6-104 155-230 (285)
277 COG0686 Ald Alanine dehydrogen 97.3 0.00064 1.4E-08 57.9 6.3 91 10-105 168-268 (371)
278 PF05368 NmrA: NmrA-like famil 97.3 0.0007 1.5E-08 56.3 6.5 63 13-80 1-73 (233)
279 PRK14982 acyl-ACP reductase; P 97.3 0.00079 1.7E-08 59.0 7.0 92 7-107 152-248 (340)
280 PRK14192 bifunctional 5,10-met 97.3 0.0016 3.6E-08 55.7 8.8 73 7-104 156-230 (283)
281 cd05197 GH4_glycoside_hydrolas 97.3 0.0045 9.7E-08 56.2 12.1 70 11-81 1-84 (425)
282 PF00899 ThiF: ThiF family; I 97.3 0.0012 2.6E-08 50.1 7.0 33 10-46 2-34 (135)
283 PRK08644 thiamine biosynthesis 97.2 0.0025 5.3E-08 52.4 9.2 34 10-47 28-61 (212)
284 CHL00194 ycf39 Ycf39; Provisio 97.2 0.00086 1.9E-08 58.5 6.8 65 11-80 1-73 (317)
285 cd05298 GH4_GlvA_pagL_like Gly 97.2 0.0058 1.3E-07 55.6 12.2 70 11-81 1-84 (437)
286 cd01076 NAD_bind_1_Glu_DH NAD( 97.2 0.0021 4.5E-08 53.4 8.3 78 8-91 29-127 (227)
287 PRK06270 homoserine dehydrogen 97.2 0.0015 3.3E-08 57.6 7.9 93 10-104 2-124 (341)
288 COG1648 CysG Siroheme synthase 97.2 0.0068 1.5E-07 49.6 11.1 87 1-92 1-93 (210)
289 TIGR02717 AcCoA-syn-alpha acet 97.2 0.0012 2.6E-08 60.5 7.3 90 9-108 6-99 (447)
290 PRK08040 putative semialdehyde 97.2 0.00099 2.1E-08 58.4 6.4 94 9-108 3-100 (336)
291 PF10728 DUF2520: Domain of un 97.2 0.0054 1.2E-07 46.3 9.6 101 147-252 9-115 (132)
292 PRK11863 N-acetyl-gamma-glutam 97.2 0.0014 3E-08 56.9 7.1 82 10-108 2-84 (313)
293 PRK00676 hemA glutamyl-tRNA re 97.1 0.0017 3.7E-08 56.8 7.5 62 9-79 173-234 (338)
294 PF10100 DUF2338: Uncharacteri 97.1 0.032 7E-07 49.4 15.3 154 11-168 2-200 (429)
295 TIGR01470 cysG_Nterm siroheme 97.1 0.0044 9.6E-08 50.6 9.5 73 9-86 8-84 (205)
296 PRK12548 shikimate 5-dehydroge 97.1 0.0019 4.1E-08 55.7 7.5 70 9-82 125-210 (289)
297 PF03447 NAD_binding_3: Homose 97.1 0.00068 1.5E-08 50.1 3.9 83 17-106 1-91 (117)
298 cd01483 E1_enzyme_family Super 97.1 0.0045 9.8E-08 47.4 8.6 32 12-47 1-32 (143)
299 TIGR01296 asd_B aspartate-semi 97.1 0.0011 2.5E-08 58.3 5.9 91 12-107 1-94 (339)
300 COG0289 DapB Dihydrodipicolina 97.1 0.0047 1E-07 51.6 8.9 100 10-115 2-110 (266)
301 cd05211 NAD_bind_Glu_Leu_Phe_V 97.0 0.0031 6.7E-08 52.0 7.8 112 7-129 20-150 (217)
302 PRK01390 murD UDP-N-acetylmura 97.0 0.003 6.5E-08 58.2 8.3 65 9-78 8-72 (460)
303 PRK12749 quinate/shikimate deh 97.0 0.0041 8.9E-08 53.5 8.6 70 9-83 123-208 (288)
304 PRK12550 shikimate 5-dehydroge 97.0 0.0029 6.2E-08 54.0 7.4 66 11-82 123-189 (272)
305 PRK06728 aspartate-semialdehyd 97.0 0.0023 5E-08 56.3 6.9 96 10-108 5-102 (347)
306 PRK07688 thiamine/molybdopteri 97.0 0.0055 1.2E-07 54.0 9.3 79 10-92 24-137 (339)
307 PRK14106 murD UDP-N-acetylmura 97.0 0.003 6.5E-08 57.9 8.0 67 8-79 3-76 (450)
308 PRK14027 quinate/shikimate deh 96.9 0.0028 6E-08 54.4 7.0 69 9-81 126-204 (283)
309 PRK00141 murD UDP-N-acetylmura 96.9 0.0035 7.6E-08 57.9 8.2 69 9-82 14-87 (473)
310 COG2344 AT-rich DNA-binding pr 96.9 0.0012 2.5E-08 52.1 4.2 78 9-92 83-167 (211)
311 TIGR00978 asd_EA aspartate-sem 96.9 0.0035 7.7E-08 55.4 7.7 91 11-107 1-106 (341)
312 COG0136 Asd Aspartate-semialde 96.9 0.0029 6.2E-08 54.9 6.6 94 10-107 1-99 (334)
313 PRK00421 murC UDP-N-acetylmura 96.9 0.0046 1E-07 56.9 8.5 68 7-79 4-74 (461)
314 PRK03369 murD UDP-N-acetylmura 96.9 0.0047 1E-07 57.3 8.3 65 10-79 12-78 (488)
315 PRK14176 bifunctional 5,10-met 96.8 0.0048 1E-07 52.7 7.5 73 7-104 161-235 (287)
316 cd00757 ThiF_MoeB_HesA_family 96.8 0.0056 1.2E-07 50.9 7.8 33 10-46 21-53 (228)
317 PF03720 UDPG_MGDP_dh_C: UDP-g 96.8 0.0046 9.9E-08 44.9 6.4 81 21-106 18-102 (106)
318 PRK06153 hypothetical protein; 96.8 0.0064 1.4E-07 53.9 8.2 94 10-109 176-302 (393)
319 PRK05562 precorrin-2 dehydroge 96.8 0.019 4.1E-07 47.3 10.5 84 4-92 17-106 (223)
320 TIGR01851 argC_other N-acetyl- 96.8 0.0053 1.1E-07 53.0 7.5 81 11-108 2-83 (310)
321 cd01492 Aos1_SUMO Ubiquitin ac 96.8 0.007 1.5E-07 49.1 7.8 34 10-47 21-54 (197)
322 PF02882 THF_DHG_CYH_C: Tetrah 96.8 0.0036 7.7E-08 48.9 5.8 73 7-104 33-107 (160)
323 PRK01710 murD UDP-N-acetylmura 96.8 0.0056 1.2E-07 56.4 8.1 65 10-79 14-85 (458)
324 PRK14191 bifunctional 5,10-met 96.8 0.0076 1.6E-07 51.4 8.1 73 7-104 154-228 (285)
325 PRK06598 aspartate-semialdehyd 96.8 0.0049 1.1E-07 54.6 7.1 92 11-107 2-100 (369)
326 COG1063 Tdh Threonine dehydrog 96.7 0.012 2.6E-07 52.2 9.7 83 12-102 171-266 (350)
327 PRK05690 molybdopterin biosynt 96.7 0.0075 1.6E-07 50.7 7.9 33 10-46 32-64 (245)
328 PRK08762 molybdopterin biosynt 96.7 0.0082 1.8E-07 53.8 8.6 35 9-47 134-168 (376)
329 TIGR02355 moeB molybdopterin s 96.7 0.0089 1.9E-07 50.1 8.2 35 10-48 24-58 (240)
330 PF14833 NAD_binding_11: NAD-b 96.7 0.016 3.4E-07 43.1 8.5 89 183-274 11-109 (122)
331 cd01486 Apg7 Apg7 is an E1-lik 96.7 0.0091 2E-07 51.3 7.9 23 12-34 1-23 (307)
332 cd01485 E1-1_like Ubiquitin ac 96.7 0.015 3.3E-07 47.2 8.9 34 10-47 19-52 (198)
333 PRK08328 hypothetical protein; 96.6 0.014 2.9E-07 48.7 8.7 41 10-54 27-67 (231)
334 PRK05597 molybdopterin biosynt 96.6 0.011 2.4E-07 52.5 8.5 79 10-92 28-139 (355)
335 cd05212 NAD_bind_m-THF_DH_Cycl 96.6 0.016 3.5E-07 44.2 8.0 71 10-104 28-99 (140)
336 PRK05678 succinyl-CoA syntheta 96.6 0.014 2.9E-07 50.3 8.4 91 9-111 7-103 (291)
337 PRK02472 murD UDP-N-acetylmura 96.6 0.01 2.2E-07 54.5 8.1 66 9-79 4-76 (447)
338 PRK05600 thiamine biosynthesis 96.5 0.014 3.1E-07 52.0 8.8 79 10-92 41-152 (370)
339 PLN02520 bifunctional 3-dehydr 96.5 0.0093 2E-07 55.8 7.5 44 8-56 377-420 (529)
340 PF02056 Glyco_hydro_4: Family 96.5 0.0051 1.1E-07 49.1 4.9 72 12-84 1-86 (183)
341 COG0190 FolD 5,10-methylene-te 96.5 0.0079 1.7E-07 50.9 6.3 71 9-104 155-227 (283)
342 PRK01438 murD UDP-N-acetylmura 96.5 0.012 2.6E-07 54.5 8.1 66 9-79 15-86 (480)
343 COG0300 DltE Short-chain dehyd 96.5 0.032 6.9E-07 47.2 9.8 86 6-104 2-91 (265)
344 PRK02006 murD UDP-N-acetylmura 96.4 0.011 2.4E-07 55.1 7.7 68 9-81 6-81 (498)
345 PRK12809 putative oxidoreducta 96.4 0.012 2.6E-07 56.5 8.2 67 9-80 309-404 (639)
346 PRK14183 bifunctional 5,10-met 96.4 0.012 2.6E-07 50.1 7.2 73 7-104 154-228 (281)
347 PRK10637 cysG siroheme synthas 96.4 0.025 5.4E-07 52.1 9.6 83 1-88 1-89 (457)
348 PRK14178 bifunctional 5,10-met 96.4 0.013 2.8E-07 49.9 7.1 75 6-105 148-224 (279)
349 cd08230 glucose_DH Glucose deh 96.3 0.034 7.5E-07 49.2 10.0 86 10-104 173-268 (355)
350 PRK12769 putative oxidoreducta 96.3 0.016 3.4E-07 55.9 8.0 67 9-80 326-421 (654)
351 KOG1502 Flavonol reductase/cin 96.3 0.0098 2.1E-07 51.6 5.8 66 9-79 5-86 (327)
352 COG4408 Uncharacterized protei 96.3 0.17 3.6E-06 43.8 13.0 152 9-164 3-197 (431)
353 PLN02775 Probable dihydrodipic 96.2 0.056 1.2E-06 46.1 10.1 109 2-117 3-123 (286)
354 PRK09242 tropinone reductase; 96.2 0.044 9.5E-07 46.0 9.7 91 4-106 3-97 (257)
355 TIGR01318 gltD_gamma_fam gluta 96.2 0.027 5.9E-07 52.0 8.8 67 9-80 140-235 (467)
356 cd00755 YgdL_like Family of ac 96.2 0.041 8.8E-07 45.8 9.0 35 9-47 10-44 (231)
357 PLN00141 Tic62-NAD(P)-related 96.2 0.016 3.4E-07 48.8 6.7 67 9-80 16-94 (251)
358 PRK06392 homoserine dehydrogen 96.2 0.0072 1.6E-07 52.9 4.7 94 11-107 1-118 (326)
359 PRK07411 hypothetical protein; 96.2 0.024 5.3E-07 51.0 8.2 79 10-92 38-149 (390)
360 TIGR01019 sucCoAalpha succinyl 96.2 0.023 5E-07 48.7 7.6 92 10-111 6-101 (286)
361 KOG1495 Lactate dehydrogenase 96.1 0.082 1.8E-06 44.4 10.3 100 10-113 20-145 (332)
362 PRK08374 homoserine dehydrogen 96.1 0.011 2.4E-07 52.1 5.5 93 10-107 2-124 (336)
363 PRK15116 sulfur acceptor prote 96.1 0.062 1.3E-06 45.7 9.7 35 9-47 29-63 (268)
364 TIGR01745 asd_gamma aspartate- 96.0 0.02 4.4E-07 50.7 6.8 92 11-107 1-99 (366)
365 PRK07523 gluconate 5-dehydroge 96.0 0.062 1.3E-06 45.0 9.4 84 9-106 9-96 (255)
366 PRK12814 putative NADPH-depend 96.0 0.026 5.6E-07 54.4 7.8 68 8-80 191-287 (652)
367 TIGR01082 murC UDP-N-acetylmur 96.0 0.025 5.4E-07 51.9 7.4 63 12-79 1-66 (448)
368 PLN03209 translocon at the inn 96.0 0.022 4.7E-07 53.4 7.0 42 9-55 79-121 (576)
369 TIGR01532 E4PD_g-proteo D-eryt 95.9 0.055 1.2E-06 47.4 9.0 93 12-107 1-122 (325)
370 PRK07878 molybdopterin biosynt 95.9 0.035 7.7E-07 50.0 8.0 79 10-92 42-153 (392)
371 TIGR01381 E1_like_apg7 E1-like 95.9 0.032 6.9E-07 52.7 7.8 31 10-43 338-368 (664)
372 COG0026 PurK Phosphoribosylami 95.9 0.012 2.6E-07 51.5 4.8 62 10-76 1-67 (375)
373 PRK14172 bifunctional 5,10-met 95.9 0.038 8.3E-07 47.0 7.6 73 7-104 155-229 (278)
374 cd05296 GH4_P_beta_glucosidase 95.9 0.042 9E-07 49.9 8.4 69 11-80 1-84 (419)
375 PLN02353 probable UDP-glucose 95.9 0.068 1.5E-06 49.3 9.8 102 8-114 322-456 (473)
376 cd01079 NAD_bind_m-THF_DH NAD 95.9 0.029 6.2E-07 45.1 6.4 86 7-105 59-156 (197)
377 PLN02516 methylenetetrahydrofo 95.9 0.042 9E-07 47.3 7.8 73 7-104 164-238 (299)
378 PRK06182 short chain dehydroge 95.9 0.076 1.7E-06 45.0 9.6 43 9-56 2-45 (273)
379 PRK14573 bifunctional D-alanyl 95.9 0.035 7.7E-07 54.8 8.3 65 9-78 3-70 (809)
380 PRK05653 fabG 3-ketoacyl-(acyl 95.8 0.058 1.3E-06 44.6 8.5 84 9-106 4-91 (246)
381 PRK12771 putative glutamate sy 95.8 0.034 7.3E-07 52.7 7.8 68 8-80 135-231 (564)
382 PRK14173 bifunctional 5,10-met 95.8 0.04 8.6E-07 47.2 7.4 73 7-104 152-226 (287)
383 PRK14177 bifunctional 5,10-met 95.8 0.048 1E-06 46.6 7.8 73 7-104 156-230 (284)
384 PLN03075 nicotianamine synthas 95.8 0.071 1.5E-06 45.9 8.9 93 9-104 123-232 (296)
385 PLN02477 glutamate dehydrogena 95.8 0.053 1.1E-06 48.9 8.4 111 7-129 203-334 (410)
386 TIGR03366 HpnZ_proposed putati 95.8 0.1 2.2E-06 44.5 10.0 86 10-104 121-217 (280)
387 PRK12429 3-hydroxybutyrate deh 95.8 0.053 1.1E-06 45.3 8.1 42 9-55 3-45 (258)
388 cd08237 ribitol-5-phosphate_DH 95.8 0.087 1.9E-06 46.4 9.7 88 10-103 164-254 (341)
389 PRK14186 bifunctional 5,10-met 95.8 0.048 1E-06 46.9 7.7 73 7-104 155-229 (297)
390 PRK14193 bifunctional 5,10-met 95.8 0.045 9.7E-07 46.8 7.5 73 7-104 155-231 (284)
391 PRK14166 bifunctional 5,10-met 95.7 0.047 1E-06 46.6 7.4 73 7-104 154-228 (282)
392 COG0771 MurD UDP-N-acetylmuram 95.7 0.024 5.1E-07 51.6 5.9 64 10-78 7-76 (448)
393 cd01484 E1-2_like Ubiquitin ac 95.7 0.07 1.5E-06 44.5 8.2 86 12-103 1-121 (234)
394 KOG0022 Alcohol dehydrogenase, 95.7 0.12 2.6E-06 44.5 9.6 53 10-66 193-245 (375)
395 TIGR03466 HpnA hopanoid-associ 95.7 0.014 3E-07 50.8 4.3 64 11-79 1-72 (328)
396 PF03059 NAS: Nicotianamine sy 95.7 0.068 1.5E-06 45.5 8.1 89 11-102 122-227 (276)
397 PRK09186 flagellin modificatio 95.6 0.1 2.2E-06 43.6 9.4 85 9-105 3-91 (256)
398 PRK10538 malonic semialdehyde 95.6 0.1 2.2E-06 43.6 9.3 78 11-105 1-82 (248)
399 PRK11908 NAD-dependent epimera 95.6 0.026 5.7E-07 49.8 6.0 63 11-78 2-75 (347)
400 cd01491 Ube1_repeat1 Ubiquitin 95.6 0.12 2.6E-06 44.4 9.7 79 9-91 18-125 (286)
401 PRK03803 murD UDP-N-acetylmura 95.6 0.038 8.3E-07 50.7 7.1 65 10-79 6-76 (448)
402 PRK06180 short chain dehydroge 95.6 0.12 2.6E-06 44.0 9.7 43 9-56 3-46 (277)
403 PRK08223 hypothetical protein; 95.6 0.1 2.2E-06 44.8 9.0 34 10-47 27-60 (287)
404 PRK14169 bifunctional 5,10-met 95.6 0.053 1.2E-06 46.3 7.2 73 7-104 153-227 (282)
405 PRK14187 bifunctional 5,10-met 95.6 0.057 1.2E-06 46.4 7.4 73 7-104 157-231 (294)
406 PRK14171 bifunctional 5,10-met 95.6 0.058 1.3E-06 46.2 7.4 72 8-104 157-230 (288)
407 PRK05875 short chain dehydroge 95.6 0.14 2.9E-06 43.5 9.9 87 8-106 5-95 (276)
408 PRK05866 short chain dehydroge 95.5 0.075 1.6E-06 45.8 8.3 83 10-106 40-126 (293)
409 TIGR03649 ergot_EASG ergot alk 95.5 0.016 3.4E-07 49.6 4.1 62 12-81 1-77 (285)
410 COG0460 ThrA Homoserine dehydr 95.5 0.023 5.1E-07 49.4 5.1 98 8-106 1-114 (333)
411 PLN02427 UDP-apiose/xylose syn 95.5 0.028 6.2E-07 50.4 5.9 67 8-79 12-94 (386)
412 COG1090 Predicted nucleoside-d 95.5 0.017 3.7E-07 48.7 4.0 55 17-76 6-61 (297)
413 PRK04308 murD UDP-N-acetylmura 95.5 0.055 1.2E-06 49.6 7.7 66 9-79 4-75 (445)
414 PRK08955 glyceraldehyde-3-phos 95.5 0.14 3E-06 45.0 9.7 91 11-107 3-121 (334)
415 PRK10537 voltage-gated potassi 95.4 0.16 3.5E-06 45.8 10.2 68 10-84 240-315 (393)
416 PRK14190 bifunctional 5,10-met 95.4 0.061 1.3E-06 46.0 7.2 73 7-104 155-229 (284)
417 PRK14170 bifunctional 5,10-met 95.4 0.061 1.3E-06 45.9 7.1 73 7-104 154-228 (284)
418 PRK07825 short chain dehydroge 95.4 0.12 2.6E-06 43.8 9.1 81 9-105 4-86 (273)
419 PLN02172 flavin-containing mon 95.4 0.025 5.3E-07 52.2 5.1 42 1-47 1-42 (461)
420 PRK14168 bifunctional 5,10-met 95.4 0.067 1.5E-06 46.0 7.3 73 7-104 158-236 (297)
421 PRK14180 bifunctional 5,10-met 95.4 0.065 1.4E-06 45.8 7.1 72 8-104 156-229 (282)
422 PRK07231 fabG 3-ketoacyl-(acyl 95.4 0.14 3E-06 42.6 9.2 83 9-106 4-90 (251)
423 COG1486 CelF Alpha-galactosida 95.3 0.057 1.2E-06 48.7 7.0 74 8-82 1-88 (442)
424 PRK14182 bifunctional 5,10-met 95.3 0.089 1.9E-06 44.9 7.8 72 8-104 155-228 (282)
425 PRK09880 L-idonate 5-dehydroge 95.3 0.17 3.7E-06 44.6 10.1 87 10-104 170-265 (343)
426 PRK12810 gltD glutamate syntha 95.3 0.086 1.9E-06 48.8 8.4 35 8-47 141-175 (471)
427 KOG2666 UDP-glucose/GDP-mannos 95.3 0.23 5E-06 42.8 10.1 104 11-118 2-142 (481)
428 PRK06901 aspartate-semialdehyd 95.3 0.02 4.3E-07 49.6 3.8 92 9-107 2-97 (322)
429 TIGR03855 NAD_NadX aspartate d 95.3 0.08 1.7E-06 44.0 7.3 53 40-93 5-59 (229)
430 PRK02705 murD UDP-N-acetylmura 95.3 0.067 1.4E-06 49.2 7.5 63 12-79 2-76 (459)
431 PRK12829 short chain dehydroge 95.2 0.15 3.3E-06 42.7 9.1 83 8-106 9-95 (264)
432 TIGR02822 adh_fam_2 zinc-bindi 95.2 0.17 3.7E-06 44.4 9.7 87 10-104 166-253 (329)
433 PRK12939 short chain dehydroge 95.2 0.12 2.6E-06 42.9 8.4 84 9-106 6-93 (250)
434 PLN02616 tetrahydrofolate dehy 95.2 0.076 1.7E-06 46.7 7.2 73 7-104 228-302 (364)
435 TIGR01087 murD UDP-N-acetylmur 95.2 0.043 9.4E-07 50.1 6.0 63 12-79 1-70 (433)
436 PLN02686 cinnamoyl-CoA reducta 95.2 0.055 1.2E-06 48.3 6.5 45 5-54 48-93 (367)
437 PRK06057 short chain dehydroge 95.1 0.23 5E-06 41.6 9.9 43 8-55 5-48 (255)
438 COG1062 AdhC Zn-dependent alco 95.1 0.2 4.4E-06 43.6 9.4 76 11-90 187-274 (366)
439 PRK12828 short chain dehydroge 95.1 0.27 5.8E-06 40.4 10.1 84 9-106 6-91 (239)
440 PRK07814 short chain dehydroge 95.1 0.14 3.1E-06 43.1 8.6 85 8-106 8-96 (263)
441 smart00846 Gp_dh_N Glyceraldeh 95.1 0.063 1.4E-06 41.5 5.8 43 11-56 1-44 (149)
442 PRK08265 short chain dehydroge 95.1 0.22 4.8E-06 41.9 9.8 79 9-105 5-88 (261)
443 PRK07062 short chain dehydroge 95.1 0.21 4.5E-06 42.1 9.6 87 8-106 6-96 (265)
444 PRK08306 dipicolinate synthase 95.1 0.066 1.4E-06 46.3 6.5 64 10-81 2-65 (296)
445 TIGR03693 ocin_ThiF_like putat 95.1 0.061 1.3E-06 50.5 6.5 72 10-83 129-216 (637)
446 PRK07775 short chain dehydroge 95.1 0.15 3.3E-06 43.3 8.6 48 2-54 2-50 (274)
447 PLN02657 3,8-divinyl protochlo 95.1 0.019 4.1E-07 51.7 3.2 38 8-50 58-96 (390)
448 PRK07984 enoyl-(acyl carrier p 95.1 0.14 3E-06 43.4 8.3 83 8-105 4-92 (262)
449 PRK14181 bifunctional 5,10-met 95.1 0.094 2E-06 44.9 7.1 73 7-104 150-228 (287)
450 PRK13394 3-hydroxybutyrate deh 95.0 0.1 2.3E-06 43.7 7.5 84 9-106 6-93 (262)
451 PRK06079 enoyl-(acyl carrier p 95.0 0.14 3E-06 43.0 8.3 81 8-105 5-91 (252)
452 PRK07454 short chain dehydroge 95.0 0.13 2.9E-06 42.6 8.0 82 10-105 6-91 (241)
453 PLN02897 tetrahydrofolate dehy 95.0 0.091 2E-06 46.0 7.0 73 7-104 211-285 (345)
454 PRK08017 oxidoreductase; Provi 95.0 0.078 1.7E-06 44.3 6.5 43 11-58 3-46 (256)
455 PRK06914 short chain dehydroge 95.0 0.1 2.2E-06 44.4 7.3 42 9-55 2-44 (280)
456 PLN02896 cinnamyl-alcohol dehy 94.9 0.088 1.9E-06 46.6 7.1 68 7-79 7-87 (353)
457 PF00185 OTCace: Aspartate/orn 94.9 0.13 2.8E-06 40.1 7.2 67 10-81 2-83 (158)
458 PRK08267 short chain dehydroge 94.9 0.28 6.1E-06 41.1 9.8 41 11-56 2-43 (260)
459 PRK05993 short chain dehydroge 94.9 0.093 2E-06 44.7 6.9 44 10-58 4-48 (277)
460 PRK06949 short chain dehydroge 94.9 0.21 4.6E-06 41.7 8.9 43 9-56 8-51 (258)
461 PRK06500 short chain dehydroge 94.8 0.32 7E-06 40.3 10.0 41 10-55 6-47 (249)
462 PRK07236 hypothetical protein; 94.8 0.046 9.9E-07 49.1 5.0 36 8-48 4-39 (386)
463 PRK14185 bifunctional 5,10-met 94.8 0.12 2.7E-06 44.3 7.3 77 7-104 154-232 (293)
464 PRK12409 D-amino acid dehydrog 94.8 0.038 8.3E-07 49.9 4.5 33 11-48 2-34 (410)
465 PLN02662 cinnamyl-alcohol dehy 94.8 0.078 1.7E-06 46.1 6.3 36 10-50 4-40 (322)
466 PF00070 Pyr_redox: Pyridine n 94.8 0.051 1.1E-06 37.0 4.1 32 12-48 1-32 (80)
467 PRK09414 glutamate dehydrogena 94.8 0.15 3.3E-06 46.5 8.2 115 7-129 229-367 (445)
468 PRK08163 salicylate hydroxylas 94.8 0.041 8.8E-07 49.4 4.7 36 9-49 3-38 (396)
469 PRK07060 short chain dehydroge 94.8 0.099 2.2E-06 43.3 6.7 44 8-56 7-51 (245)
470 TIGR03325 BphB_TodD cis-2,3-di 94.8 0.3 6.6E-06 41.0 9.7 43 9-56 4-47 (262)
471 COG0499 SAM1 S-adenosylhomocys 94.8 0.082 1.8E-06 46.2 6.0 68 10-83 209-276 (420)
472 PRK04663 murD UDP-N-acetylmura 94.8 0.11 2.3E-06 47.7 7.3 64 10-79 7-76 (438)
473 TIGR03736 PRTRC_ThiF PRTRC sys 94.7 0.24 5.3E-06 41.5 8.7 25 9-33 10-34 (244)
474 PLN00198 anthocyanidin reducta 94.7 0.071 1.5E-06 46.8 5.9 38 7-49 6-44 (338)
475 PRK05717 oxidoreductase; Valid 94.7 0.47 1E-05 39.7 10.7 46 5-55 4-51 (255)
476 cd01489 Uba2_SUMO Ubiquitin ac 94.7 0.081 1.8E-06 46.0 6.1 77 12-92 1-111 (312)
477 PRK05867 short chain dehydroge 94.7 0.17 3.7E-06 42.3 8.0 83 9-105 8-94 (253)
478 PRK03815 murD UDP-N-acetylmura 94.7 0.072 1.6E-06 48.2 6.0 63 11-82 1-67 (401)
479 PRK05854 short chain dehydroge 94.7 0.27 5.8E-06 42.8 9.4 84 9-104 13-100 (313)
480 cd01488 Uba3_RUB Ubiquitin act 94.7 0.19 4.1E-06 43.3 8.1 75 12-90 1-107 (291)
481 PRK07890 short chain dehydroge 94.7 0.19 4.2E-06 42.0 8.3 83 9-105 4-90 (258)
482 PRK12779 putative bifunctional 94.7 0.11 2.4E-06 52.0 7.7 66 9-79 305-400 (944)
483 PRK07831 short chain dehydroge 94.7 0.24 5.2E-06 41.6 8.8 42 9-55 16-59 (262)
484 PLN02358 glyceraldehyde-3-phos 94.7 0.37 8E-06 42.4 10.1 44 10-56 5-50 (338)
485 COG0057 GapA Glyceraldehyde-3- 94.7 0.26 5.7E-06 42.8 8.9 44 11-56 2-46 (335)
486 PRK12826 3-ketoacyl-(acyl-carr 94.7 0.094 2E-06 43.6 6.3 41 9-54 5-46 (251)
487 PRK08703 short chain dehydroge 94.7 0.099 2.1E-06 43.3 6.3 44 7-55 3-47 (239)
488 PRK04690 murD UDP-N-acetylmura 94.7 0.14 3.1E-06 47.3 7.9 66 9-79 7-77 (468)
489 PRK14167 bifunctional 5,10-met 94.7 0.14 3.1E-06 44.1 7.2 72 8-104 155-232 (297)
490 COG5322 Predicted dehydrogenas 94.6 0.032 7E-07 46.8 3.2 89 5-103 162-259 (351)
491 PRK07109 short chain dehydroge 94.6 0.22 4.8E-06 43.8 8.8 84 8-105 6-93 (334)
492 TIGR02130 dapB_plant dihydrodi 94.6 0.25 5.4E-06 42.1 8.5 99 12-117 2-112 (275)
493 PRK06197 short chain dehydroge 94.6 0.3 6.6E-06 42.2 9.4 40 10-54 16-56 (306)
494 PRK06194 hypothetical protein; 94.6 0.3 6.5E-06 41.6 9.3 84 9-106 5-92 (287)
495 COG1832 Predicted CoA-binding 94.6 0.42 9E-06 36.0 8.6 97 10-117 16-116 (140)
496 PRK07774 short chain dehydroge 94.6 0.2 4.3E-06 41.7 8.0 42 9-55 5-47 (250)
497 PRK06138 short chain dehydroge 94.6 0.46 9.9E-06 39.5 10.2 83 9-106 4-90 (252)
498 TIGR01317 GOGAT_sm_gam glutama 94.6 0.16 3.4E-06 47.2 8.0 34 9-47 142-175 (485)
499 PRK08340 glucose-1-dehydrogena 94.6 0.32 6.8E-06 40.9 9.3 81 11-106 1-85 (259)
500 PRK07326 short chain dehydroge 94.6 0.1 2.2E-06 43.1 6.1 41 10-55 6-47 (237)
No 1
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=100.00 E-value=6.9e-55 Score=362.55 Aligned_cols=263 Identities=50% Similarity=0.806 Sum_probs=249.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeccCchhhccCCCEEEEeeCcccHHHHH
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVA 88 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v~ 88 (274)
++||||||+|+||.+|+.+|+++|.+++.+|++. +|++++.+.+.+ +|+...+++.+++.++|+||+||||+++++++
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~-~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~LavKPq~~~~vl 79 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVT-NRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAVKPQDLEEVL 79 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhcCCCCcceEEEe-CCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEeChHhHHHHH
Confidence 3689999999999999999999995566799999 999999976665 77766667778899999999999999999999
Q ss_pred HHhccccCCCCEEEEecCCCCHHHHHHhhCCCceEEEcCCcHHhhcCCceEEecCCCCCHHHHHHHHHHhhhcCCeEEcC
Q 024016 89 MQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRAD 168 (274)
Q Consensus 89 ~~i~~~l~~~~~vis~~~g~~~~~l~~~~~~~~~~~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~g~~~~~~ 168 (274)
.++.+ +.++++|||+..|++++.+++++++.+++|+|||+|..++.|.+.++.+.+.+++..+.+..+|+.+|.+++++
T Consensus 80 ~~l~~-~~~~~lvISiaAGv~~~~l~~~l~~~~vvR~MPNt~a~vg~g~t~i~~~~~~~~~~~~~v~~l~~~~G~v~~v~ 158 (266)
T COG0345 80 SKLKP-LTKDKLVISIAAGVSIETLERLLGGLRVVRVMPNTPALVGAGVTAISANANVSEEDKAFVEALLSAVGKVVEVE 158 (266)
T ss_pred HHhhc-ccCCCEEEEEeCCCCHHHHHHHcCCCceEEeCCChHHHHcCcceeeecCccCCHHHHHHHHHHHHhcCCeEEec
Confidence 99998 77899999999999999999999888999999999999999999999988899999999999999999998888
Q ss_pred ccchhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHHHHHH
Q 024016 169 EKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIH 248 (274)
Q Consensus 169 e~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~l~ 248 (274)
|+.+|.+++++||+|+|++.++++|.+++++.|++++++++++.+++.|+.+++.+++.+|..|+++|+||||+|+++|+
T Consensus 159 E~~~da~TaisGSgPAyv~~~iEal~~agv~~Gl~~~~A~~l~~~t~~Gaakll~e~~~~p~~Lr~~VtSPGGtTiagl~ 238 (266)
T COG0345 159 ESLMDAVTALSGSGPAYVFLFIEALADAGVRLGLPREEARELAAQTVAGAAKLLLESGEHPAELRDQVTSPGGTTIAGLR 238 (266)
T ss_pred hHHhhHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhCcCCCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHhhcC
Q 024016 249 ELEKSGFRGILMNAVVAAAKRSRELS 274 (274)
Q Consensus 249 ~l~~~~~~~~~~~a~~~~~~r~~~~~ 274 (274)
.||+.+|+.++.++++++++|++||+
T Consensus 239 ~le~~g~~~~v~~av~aa~~r~~el~ 264 (266)
T COG0345 239 VLEEDGFRGAVIEAVEAAYKRSEELG 264 (266)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999986
No 2
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=100.00 E-value=2.8e-54 Score=366.43 Aligned_cols=263 Identities=36% Similarity=0.625 Sum_probs=249.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeccCchhhccCCCEEEEeeCcccHHHHHH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVAM 89 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v~~ 89 (274)
+||+|||+|+||.+|+++|+++|+..+.+|++| +|++++++.+.+ .|+...+++.+++++||+||+|+||+++.++++
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~-~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavkP~~~~~vl~ 81 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICS-DLNVSNLKNASDKYGITITTNNNEVANSADILILSIKPDLYSSVIN 81 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEE-CCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeChHHHHHHHH
Confidence 589999999999999999999986555689999 999999988876 788777788888899999999999999999999
Q ss_pred HhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHhhcCCceEEecCCCCCHHHHHHHHHHhhhcCCeEEcC
Q 024016 90 QIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRAD 168 (274)
Q Consensus 90 ~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~g~~~~~~ 168 (274)
++.+.++++++|||+.+|++++.++++++ ..+++|.|||.|..+++|.+.++++++.++++.+.++.+|+.+|.+++++
T Consensus 82 ~l~~~~~~~~lvISi~AGi~i~~l~~~l~~~~~vvR~MPN~~~~vg~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~~~~ 161 (272)
T PRK12491 82 QIKDQIKNDVIVVTIAAGKSIKSTENEFDRKLKVIRVMPNTPVLVGEGMSALCFNEMVTEKDIKEVLNIFNIFGQTEVVN 161 (272)
T ss_pred HHHHhhcCCcEEEEeCCCCcHHHHHHhcCCCCcEEEECCChHHHHcCceEEEEeCCCCCHHHHHHHHHHHHcCCCEEEEc
Confidence 99988888899999999999999999997 45899999999999999999999988889999999999999999998889
Q ss_pred ccchhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHHHHHH
Q 024016 169 EKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIH 248 (274)
Q Consensus 169 e~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~l~ 248 (274)
|+++|.+++++||+|+|++.+++++.+++++.|++++++++++.+++.|+.+++.+++.+|..++++++||||+|+++|+
T Consensus 162 E~~~d~~talsgsgPAf~~~~~eal~~a~v~~Gl~~~~A~~l~~~t~~G~a~ll~~~~~~p~~l~~~V~sPGGtT~~gl~ 241 (272)
T PRK12491 162 EKLMDVVTSISGSSPAYVYMFIEAMADAAVLGGMPRKQAYKFAAQAVLGSAKMVLETGIHPGELKDMVCSPGGTTIEAVA 241 (272)
T ss_pred HHHhhhHHHhccCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhCCCCchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988999999999999999999999999
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHhhcC
Q 024016 249 ELEKSGFRGILMNAVVAAAKRSRELS 274 (274)
Q Consensus 249 ~l~~~~~~~~~~~a~~~~~~r~~~~~ 274 (274)
.||+++++..+.++++++++|++||+
T Consensus 242 ~le~~~~~~~~~~av~aa~~r~~el~ 267 (272)
T PRK12491 242 TLEEKGLRTAIISAMKRCTQKSMEMS 267 (272)
T ss_pred HHHHCChHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999985
No 3
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=100.00 E-value=3.7e-49 Score=334.15 Aligned_cols=259 Identities=39% Similarity=0.646 Sum_probs=237.5
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccHHHH
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDV 87 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v 87 (274)
|+.|||+|||+|+||++|+++|.+++..++.+++++ +|++++. +.....++.++++++|+||+|+||++++++
T Consensus 1 ~~~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~-~~~~~~~------~~~~~~~~~~~~~~~D~Vilavkp~~~~~v 73 (260)
T PTZ00431 1 MENIRVGFIGLGKMGSALAYGIENSNIIGKENIYYH-TPSKKNT------PFVYLQSNEELAKTCDIIVLAVKPDLAGKV 73 (260)
T ss_pred CCCCEEEEECccHHHHHHHHHHHhCCCCCcceEEEE-CCChhcC------CeEEeCChHHHHHhCCEEEEEeCHHHHHHH
Confidence 456799999999999999999999886455579999 9887542 444556777888899999999999999999
Q ss_pred HHHhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHhhcCCceEEecCCCCCHHHHHHHHHHhhhcCCeEE
Q 024016 88 AMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWR 166 (274)
Q Consensus 88 ~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~g~~~~ 166 (274)
+.++.+++.+ ++|||+++|++.+.++++++ ..+++|++||+|..+++|.+.+++..+.+++..+.++.+|+.+|.+++
T Consensus 74 l~~i~~~l~~-~~iIS~~aGi~~~~l~~~~~~~~~vvr~mPn~p~~~g~g~t~i~~~~~~~~~~~~~v~~l~~~~G~~~~ 152 (260)
T PTZ00431 74 LLEIKPYLGS-KLLISICGGLNLKTLEEMVGVEAKIVRVMPNTPSLVGQGSLVFCANNNVDSTDKKKVIDIFSACGIIQE 152 (260)
T ss_pred HHHHHhhccC-CEEEEEeCCccHHHHHHHcCCCCeEEEECCCchhHhcceeEEEEeCCCCCHHHHHHHHHHHHhCCcEEE
Confidence 9999987754 68899999999999999887 346899999999999999999998877888999999999999999988
Q ss_pred cCccchhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHHHH
Q 024016 167 ADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAG 246 (274)
Q Consensus 167 ~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~ 246 (274)
++|+++|.+++++||+|+|++.+++++.+++++.|++++++++++.+++.|+++++.+++.+|..++++++||||+|+++
T Consensus 153 v~E~~~d~~ta~~gsgPA~~~~~~~al~~~~v~~Gl~~~~a~~l~~~~~~G~a~ll~~~~~~~~~l~~~v~spgG~T~~g 232 (260)
T PTZ00431 153 IKEKDMDIATAISGCGPAYVFLFIESLIDAGVKNGLNRDVSKNLVLQTILGSVHMVKASDQPVQQLKDDVCSPGGITIVG 232 (260)
T ss_pred EChHHcchhhhhcCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhCCCCChHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhhcC
Q 024016 247 IHELEKSGFRGILMNAVVAAAKRSRELS 274 (274)
Q Consensus 247 l~~l~~~~~~~~~~~a~~~~~~r~~~~~ 274 (274)
++.||++||+..+.++++++++|++||+
T Consensus 233 l~~le~~g~~~~~~~a~~aa~~r~~~l~ 260 (260)
T PTZ00431 233 LYTLEKHAFKYTVMDAVESACQKSKSMH 260 (260)
T ss_pred HHHHHHCChHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999986
No 4
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=100.00 E-value=1e-48 Score=334.20 Aligned_cols=262 Identities=23% Similarity=0.331 Sum_probs=239.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-HHHHHHHH-c-CceeccCchhhccCCCEEEEeeCcccHHHH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-KRRDAFES-I-GVKVLSDNNAVVEYSDVVVFSVKPQVVKDV 87 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~-~~~~~l~~-~-g~~~~~~~~~~~~~aDiIil~v~~~~~~~v 87 (274)
+||+|||+|+||.+|+++|.++|..++.+|.+| +|++ ++.+.+.. . ++.+..+..++++++|+||+|+||+.+.++
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~-~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavpp~~~~~v 80 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILY-SSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVPPLAVLPL 80 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEE-eCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecCHHHHHHH
Confidence 589999999999999999999983333489999 7754 44555544 3 345556777788899999999999999999
Q ss_pred HHHhccccCCCCEEEEecCCCCHHHHHHhhCCCceEEEcCCcHHhhcCCceEEecCCCCCHHHHHHHHHHhhhcCCeEEc
Q 024016 88 AMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRA 167 (274)
Q Consensus 88 ~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~~~~~~~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~g~~~~~ 167 (274)
+.++.++++++++|||+++|++.+.++++++..+++|.|||.|..+++|.+.++.+++.++++.+.++.+|+.+|.++++
T Consensus 81 l~~l~~~l~~~~~ivS~~aGi~~~~l~~~~~~~~vvR~MPN~~~~~g~g~t~~~~~~~~~~~~~~~v~~l~~~~G~~~~v 160 (277)
T PRK06928 81 LKDCAPVLTPDRHVVSIAAGVSLDDLLEITPGLQVSRLIPSLTSAVGVGTSLVAHAETVNEANKSRLEETLSHFSHVMTI 160 (277)
T ss_pred HHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCCEEEEeCccHHHHhhhcEEEecCCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 99999888888899999999999999999986689999999999999999999988888899999999999999999888
Q ss_pred CccchhhHHHhhcchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHHHH
Q 024016 168 DEKLFDAITGLSGSGPAYIFLAIEALADGGVAA-GLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAG 246 (274)
Q Consensus 168 ~e~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~ 246 (274)
+|+++|.+++++||+|+|++.+++++.+++++. |++++++++++.+++.|+++++.+++.+|..++++++||||+|++|
T Consensus 161 ~E~~~d~~tal~gsgPA~~~~~~~al~~a~~~~ggl~~~~a~~l~~~~~~G~a~l~~~~~~~p~~l~~~v~spgGtT~~g 240 (277)
T PRK06928 161 REENMDIASNLTSSSPGFIAAIFEEFAEAAVRNSSLSDEEAFQFLNFALAGTGKLLVEEDYTFSGTIERVATKGGITAEG 240 (277)
T ss_pred chhhCceeeeeecCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHhCCCCChHHHHH
Confidence 999999999999999999999999999999998 7999999999999999999999888999999999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhhcC
Q 024016 247 IHELEKSGFRGILMNAVVAAAKRSRELS 274 (274)
Q Consensus 247 l~~l~~~~~~~~~~~a~~~~~~r~~~~~ 274 (274)
|+.||+ +++..+.++++++++|+++|+
T Consensus 241 l~~le~-~~~~~~~~~~~~a~~r~~~~~ 267 (277)
T PRK06928 241 AEVIQA-QLPQFFDELLDRTQKKYASSK 267 (277)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 999997 999999999999999999874
No 5
>PLN02688 pyrroline-5-carboxylate reductase
Probab=100.00 E-value=4.1e-48 Score=329.79 Aligned_cols=264 Identities=72% Similarity=1.093 Sum_probs=245.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccHHHHHHH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVAMQ 90 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v~~~ 90 (274)
|||+|||+|+||.+|+++|+++|++++.+|++|.+|++++.+.+.+.|+.+.+++.++++++|+||+|+||+++++++.+
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~~~~~~~vl~~ 80 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVKPQVVKDVLTE 80 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEECcHHHHHHHHH
Confidence 68999999999999999999999755567777658999998888888998888888889999999999999999999999
Q ss_pred hccccCCCCEEEEecCCCCHHHHHHhhCCCceEEEcCCcHHhhcCCceEEecCCCCCHHHHHHHHHHhhhcCCeEEcCcc
Q 024016 91 IRPLLSRKKLLVSVAAGVKLKDLQEWTGHSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEK 170 (274)
Q Consensus 91 i~~~l~~~~~vis~~~g~~~~~l~~~~~~~~~~~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~g~~~~~~e~ 170 (274)
+.+.++++++|||++++++.+.++++++..+++|.||++|...+.+.+.++.+...+++.++.++++|+.+|.+++++|+
T Consensus 81 l~~~~~~~~~iIs~~~g~~~~~l~~~~~~~~vvr~mP~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~G~~~~~~e~ 160 (266)
T PLN02688 81 LRPLLSKDKLLVSVAAGITLADLQEWAGGRRVVRVMPNTPCLVGEAASVMSLGPAATADDRDLVATLFGAVGKIWVVDEK 160 (266)
T ss_pred HHhhcCCCCEEEEecCCCcHHHHHHHcCCCCEEEECCCcHHHHhCceEEEEeCCCCCHHHHHHHHHHHHhCCCEEEeCHH
Confidence 98888889999999999999999988774479999999999999999988888777899999999999999997788999
Q ss_pred chhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHHHHHHHH
Q 024016 171 LFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHEL 250 (274)
Q Consensus 171 ~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~l~~l 250 (274)
.+|.+++++|++|+|++.+++++.|++++.|++++++++++.+++.|+.+++.+++.+|..+++.++||||+|+++++.|
T Consensus 161 ~~d~~~~~~g~g~a~~~~~~~a~~ea~~~~Gl~~~~a~~~~~~~~~gs~~l~~~~~~~~~~l~~~v~spgG~t~~~l~~l 240 (266)
T PLN02688 161 LLDAVTGLSGSGPAYIFLAIEALADGGVAAGLPRDVALSLAAQTVLGAAKMVLETGKHPGQLKDMVTSPGGTTIAGVHEL 240 (266)
T ss_pred HcchhHhhhcCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhCCCCchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988889999999999999999999999999
Q ss_pred HhCCHHHHHHHHHHHHHHHHhhcC
Q 024016 251 EKSGFRGILMNAVVAAAKRSRELS 274 (274)
Q Consensus 251 ~~~~~~~~~~~a~~~~~~r~~~~~ 274 (274)
++.+++..+.++++++++|++||+
T Consensus 241 ~~~g~~~~~~~a~~~~~~r~~~~~ 264 (266)
T PLN02688 241 EKGGFRAALMNAVVAAAKRSRELS 264 (266)
T ss_pred HHCChHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999985
No 6
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=100.00 E-value=7e-48 Score=330.02 Aligned_cols=266 Identities=31% Similarity=0.524 Sum_probs=244.4
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-HHHHHHHH-cCceeccCchhhccCCCEEEEeeCcccHH
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-KRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVVK 85 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~-~~~~~l~~-~g~~~~~~~~~~~~~aDiIil~v~~~~~~ 85 (274)
|+.|||+|||+|+||.+|+++|+++|...+.+|++| +|++ ++.+.+.. .|++...++.++++++|+||+||||+++.
T Consensus 1 ~~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~-~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~p~~~~ 79 (279)
T PRK07679 1 MSIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVS-NRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMKPKDVA 79 (279)
T ss_pred CCCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEE-CCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeCHHHHH
Confidence 456799999999999999999999983334489999 9976 46677766 58887788888889999999999999999
Q ss_pred HHHHHhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHhhcCCceEEecCCCCCHHHHHHHHHHhhhcCCe
Q 024016 86 DVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKI 164 (274)
Q Consensus 86 ~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~g~~ 164 (274)
+++.++.+.++++++|||+++|++++.++++++ +.+++|.|||.|...+.+.+.+++++..+++.++.++++|+.+|..
T Consensus 80 ~vl~~l~~~~~~~~liIs~~aGi~~~~l~~~~~~~~~v~r~mPn~~~~~~~~~t~~~~~~~~~~~~~~~v~~l~~~~G~~ 159 (279)
T PRK07679 80 EALIPFKEYIHNNQLIISLLAGVSTHSIRNLLQKDVPIIRAMPNTSAAILKSATAISPSKHATAEHIQTAKALFETIGLV 159 (279)
T ss_pred HHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCCeEEEECCCHHHHHhcccEEEeeCCCCCHHHHHHHHHHHHhCCcE
Confidence 999999888888999999999999999998886 4689999999999999999999888777889999999999999998
Q ss_pred EEcCccchhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHH
Q 024016 165 WRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTI 244 (274)
Q Consensus 165 ~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~ 244 (274)
++++|+.+|.+++++|++|+|++.+++++.|++++.|++++++++++.+++.|+..++.+++.+|..+++++++|+|+|+
T Consensus 160 ~~v~e~~~~~~~a~~Gsgpa~~~~~~eal~e~~~~~Gl~~~~a~~~~~~~~~gsa~~~~~~~~~~~~l~~~v~spgg~t~ 239 (279)
T PRK07679 160 SVVEEEDMHAVTALSGSGPAYIYYVVEAMEKAAKKIGLKEDVAKSLILQTMIGAAEMLKASEKHPSILRKEITSPGGTTE 239 (279)
T ss_pred EEeCHHHhhhHHHhhcCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCCCchHHH
Confidence 88899999999999999999999999999999999999999999999999999999988888999999999999999999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhhcC
Q 024016 245 AGIHELEKSGFRGILMNAVVAAAKRSRELS 274 (274)
Q Consensus 245 ~~l~~l~~~~~~~~~~~a~~~~~~r~~~~~ 274 (274)
.+|+.|++++|+..+.++++++++|++||+
T Consensus 240 ~gl~~l~~~~~~~~i~~a~~~a~~r~~~l~ 269 (279)
T PRK07679 240 AGIEVLQEHRFQQALISCITQATQRSHNLG 269 (279)
T ss_pred HHHHHHHHCChHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999985
No 7
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=100.00 E-value=3.3e-45 Score=312.08 Aligned_cols=261 Identities=48% Similarity=0.752 Sum_probs=240.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeccCchhhccCCCEEEEeeCcccHHHHH
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVA 88 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v~ 88 (274)
+|||+|||+|+||++++..|.++|+ ...+|.+| +|++++.+.+.+ .|+.+..++.++++++|+||+|+|++++++++
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~g~-~~~~v~v~-~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~~~~~~v~ 79 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLASGV-PAKDIIVS-DPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKPQVMEEVL 79 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhCCC-CcceEEEE-cCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCHHHHHHHH
Confidence 4789999999999999999999983 22389999 999999888877 48877778888888999999999999999999
Q ss_pred HHhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHhhcCCceEEecCCCCCHHHHHHHHHHhhhcCCeEEc
Q 024016 89 MQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRA 167 (274)
Q Consensus 89 ~~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~g~~~~~ 167 (274)
+++.+.+ +++|||+++|++.+.++++++ +.+++++||++|...+.+.+.++++...+++..+.++.+|+.+|..+++
T Consensus 80 ~~l~~~~--~~~vvs~~~gi~~~~l~~~~~~~~~iv~~~P~~p~~~~~~~~~i~~~~~~~~~~~~~v~~l~~~lG~~~~~ 157 (267)
T PRK11880 80 SELKGQL--DKLVVSIAAGVTLARLERLLGADLPVVRAMPNTPALVGAGMTALTANALVSAEDRELVENLLSAFGKVVWV 157 (267)
T ss_pred HHHHhhc--CCEEEEecCCCCHHHHHHhcCCCCcEEEecCCchHHHcCceEEEecCCCCCHHHHHHHHHHHHhCCeEEEE
Confidence 9998876 578999999999999998887 5789999999999999999988888878899999999999999987555
Q ss_pred -CccchhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHHHH
Q 024016 168 -DEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAG 246 (274)
Q Consensus 168 -~e~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~ 246 (274)
+|+.+|.++++++++|+|++.+++++.+++.+.|++++++.+++.+++.|+.+++.+++.+|..+++.+++|||+|+++
T Consensus 158 ~~e~~~d~~~a~~~~~pa~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~v~tpgG~t~~g 237 (267)
T PRK11880 158 DDEKQMDAVTAVSGSGPAYVFLFIEALADAGVKLGLPREQARKLAAQTVLGAAKLLLESGEHPAELRDNVTSPGGTTIAA 237 (267)
T ss_pred CChHhcchHHHHhcChHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhCCCCcHHHHHH
Confidence 4899999999999999999999999999999999999999999999999999999888999999999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhhcC
Q 024016 247 IHELEKSGFRGILMNAVVAAAKRSRELS 274 (274)
Q Consensus 247 l~~l~~~~~~~~~~~a~~~~~~r~~~~~ 274 (274)
++.|++.|++..+.++++++++|+++|+
T Consensus 238 l~~l~~~g~~~~~~~a~~~~~~ra~~~~ 265 (267)
T PRK11880 238 LRVLEEKGLRAAVIEAVQAAAKRSKELG 265 (267)
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999986
No 8
>PRK07680 late competence protein ComER; Validated
Probab=100.00 E-value=5.2e-44 Score=305.30 Aligned_cols=259 Identities=21% Similarity=0.399 Sum_probs=236.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-c-CceeccCchhhccCCCEEEEeeCcccHHHHH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-I-GVKVLSDNNAVVEYSDVVVFSVKPQVVKDVA 88 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~-g~~~~~~~~~~~~~aDiIil~v~~~~~~~v~ 88 (274)
|+|+|||+|+||++|+.+|.++|++.+.+|++| +|++++.+.+.+ . |+....++.+++.++|+||+|+||+++.+++
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~-~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~p~~~~~vl 79 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTIT-NRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVKPLDIYPLL 79 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEE-CCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecCHHHHHHHH
Confidence 479999999999999999999985445589999 999998888776 3 7777778888889999999999999999999
Q ss_pred HHhccccCCCCEEEEecCCCCHHHHHHhhCCCceEEEcCCcHHhhcCCceEEecCCCCCHHHHHHHHHHhhhcCCeEEcC
Q 024016 89 MQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRAD 168 (274)
Q Consensus 89 ~~i~~~l~~~~~vis~~~g~~~~~l~~~~~~~~~~~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~g~~~~~~ 168 (274)
+++.++++++++|||+++|++.+.++++++ ..+++++|+.|...+.|.+.++.++..+++..+.++++|+.+|..++++
T Consensus 80 ~~l~~~l~~~~~iis~~ag~~~~~L~~~~~-~~~~r~~p~~~~~~~~G~t~~~~g~~~~~~~~~~~~~ll~~~G~~~~i~ 158 (273)
T PRK07680 80 QKLAPHLTDEHCLVSITSPISVEQLETLVP-CQVARIIPSITNRALSGASLFTFGSRCSEEDQQKLERLFSNISTPLVIE 158 (273)
T ss_pred HHHHhhcCCCCEEEEECCCCCHHHHHHHcC-CCEEEECCChHHHHhhccEEEeeCCCCCHHHHHHHHHHHHcCCCEEEEC
Confidence 999988888899999999999999998887 4789999999987888988877776677888899999999999888889
Q ss_pred ccchhhHHHhhcchHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHHHHH
Q 024016 169 EKLFDAITGLSGSGPAYIFLAIEALADGGVA-AGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGI 247 (274)
Q Consensus 169 e~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~l 247 (274)
|+.++..+++++++|+|++.+++++.+++.+ .|++++++++++.+++.|+.+++.+++.+|..++++++||||+|++|+
T Consensus 159 e~~~~~~~~l~gs~pa~~~~~~~al~~~~~~~~Gl~~~~a~~~~~~~~~G~~~l~~~~~~~~~~l~~~v~spgG~T~~gl 238 (273)
T PRK07680 159 EDITRVSSDIVSCGPAFFSYLLQRFIDAAVEETNISKEEATTLASEMLIGMGKLLEKGLYTLPTLQEKVCVKGGITGEGI 238 (273)
T ss_pred hHhcchhhhhccchHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhCCCCChhHHHHH
Confidence 9999999999999999999999999999887 899999999999999999999998888999999999999999999999
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHhh
Q 024016 248 HELEKSGFRGILMNAVVAAAKRSRE 272 (274)
Q Consensus 248 ~~l~~~~~~~~~~~a~~~~~~r~~~ 272 (274)
+.||+ +++..+.++++++.+|..+
T Consensus 239 ~~le~-~~~~~~~~~~~~~~~~~~~ 262 (273)
T PRK07680 239 KVLEE-EVGDMFHRLFQRTHEKFDE 262 (273)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 99999 7999999999999999654
No 9
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=100.00 E-value=6.3e-44 Score=299.36 Aligned_cols=241 Identities=48% Similarity=0.742 Sum_probs=225.1
Q ss_pred hCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeccCchhhccCCCEEEEeeCcccHHHHHHHhccccCCCCEEEEecCCCC
Q 024016 31 KSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 31 ~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
+.|.+.+.+|++| +|++++.+.+.+ .|+.+..++.++++++|+||+||||+++++++.++.+.+.++++|||+++|++
T Consensus 3 ~~~~~~~~~I~v~-~R~~e~~~~l~~~~g~~~~~~~~e~~~~aDiIiLaVkP~~i~~vl~~l~~~~~~~~~ivS~~agi~ 81 (245)
T TIGR00112 3 KAGALAAYDIIVI-NRSPEKLAALAKELGIVASSDAQEAVKEADVVFLAVKPQDLEEVLSELKSEKGKDKLLISIAAGVT 81 (245)
T ss_pred CCCCCCCCeEEEE-cCCHHHHHHHHHHcCcEEeCChHHHHhhCCEEEEEeCHHHHHHHHHHHhhhccCCCEEEEecCCCC
Confidence 3444456689999 999999888866 68888888888889999999999999999999999887777899999999999
Q ss_pred HHHHHHhhC-CCceEEEcCCcHHhhcCCceEEecCCCCCHHHHHHHHHHhhhcCCeEEcCccchhhHHHhhcchHHHHHH
Q 024016 110 LKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIFL 188 (274)
Q Consensus 110 ~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~g~~~~~~e~~~~~~~a~~~~~~~~~~~ 188 (274)
++.++++++ +.+++|.|||.|..+++|.+.+++++..+++..+.++++|+.+|.+++++|+++|.+++++||+|+|++.
T Consensus 82 ~~~l~~~~~~~~~ivR~mPn~~~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~~v~E~~~~~~talsgsgPA~~~~ 161 (245)
T TIGR00112 82 LEKLSQLLGGTRRVVRVMPNTPAKVGAGVTAIAANANVSEEDRALVLALFKAVGEVVELPEALMDAVTALSGSGPAYVFL 161 (245)
T ss_pred HHHHHHHcCCCCeEEEECCChHHHHhCCeEEEecCCCCCHHHHHHHHHHHHhCCCEEEECHHHcchHHhhccCcHHHHHH
Confidence 999999997 4689999999999999999999998888899999999999999999888899999999999999999999
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 024016 189 AIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAAAK 268 (274)
Q Consensus 189 ~~~~l~e~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~l~~l~~~~~~~~~~~a~~~~~~ 268 (274)
+++++.+++++.|++++++++++.+++.|+++++.+++.+|++++++++||||+|++||+.|++.+|+..+.++++++++
T Consensus 162 ~~~al~~~~v~~Gl~~~~A~~lv~~~~~G~a~l~~~~~~~~~~l~~~v~spgGtT~~gl~~Le~~~~~~~~~~a~~aa~~ 241 (245)
T TIGR00112 162 FIEALADAGVKQGLPRELALELAAQTVKGAAKLLEESGEHPALLKDQVTSPGGTTIAGLAVLEEKGVRGAVIEAVEAAVR 241 (245)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHcCCCCcHHHHHHHHHHHHCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998899999999999999999999999999999999999999999999
Q ss_pred HHhh
Q 024016 269 RSRE 272 (274)
Q Consensus 269 r~~~ 272 (274)
|++|
T Consensus 242 r~~e 245 (245)
T TIGR00112 242 RSRE 245 (245)
T ss_pred HhcC
Confidence 9975
No 10
>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=100.00 E-value=4.9e-44 Score=288.62 Aligned_cols=263 Identities=56% Similarity=0.828 Sum_probs=245.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHH-HHHcCceeccCchhhccCCCEEEEeeCcccHHHHHH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA-FESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVAM 89 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~-l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v~~ 89 (274)
|+|||||.|+|..++++++...|.+..+++..+ ..+...... +...|+....++.+..+.+|++|++++|+.+++++.
T Consensus 1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s-~~~~~~~~~~~~~~g~~~~~~n~~~~~~s~v~~~svKp~~i~~vls 79 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVASGIIEANRIWAS-VQTERSLGLMFEALGVKTVFTNLEVLQASDVVFLSVKPQVIESVLS 79 (267)
T ss_pred CceeEechhhhHHHHHhcccccCCCchhheeee-cCchhhhhhhhhcCCceeeechHHHHhhccceeEeecchhHHHHhh
Confidence 589999999999999999999999888888888 664443333 666888877777888999999999999999999999
Q ss_pred HhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHhhcCCceEEecCCCCCHHHHHHHHHHhhhcCCeEEcC
Q 024016 90 QIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRAD 168 (274)
Q Consensus 90 ~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~g~~~~~~ 168 (274)
++...+..+++++|+..|++++.+++.++ ..+++|.|||.|..+++|.+++..+.....++.+.++++++.+|.+..++
T Consensus 80 ~~~~~~~~~~iivS~aaG~tl~~l~~~l~~~~rviRvmpNtp~~v~eg~sv~~~g~~~~~~D~~l~~~ll~~vG~~~evp 159 (267)
T KOG3124|consen 80 EIKPKVSKGKIIVSVAAGKTLSSLESKLSPPTRVIRVMPNTPSVVGEGASVYAIGCHATNEDLELVEELLSAVGLCEEVP 159 (267)
T ss_pred cCccccccceEEEEEeecccHHHHHHhcCCCCceEEecCCChhhhhcCcEEEeeCCCcchhhHHHHHHHHHhcCcceeCc
Confidence 99887788999999999999999999887 57899999999999999999888888888999999999999999999999
Q ss_pred ccchhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHHHHHH
Q 024016 169 EKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIH 248 (274)
Q Consensus 169 e~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~l~ 248 (274)
|+.+|++|+++|++|+|.+..+++|+|.+++.|++++.++++..+++.|+.+++.+++.||..|+|+++||+|+|+.++.
T Consensus 160 E~~iDavTgLsGSgPAy~f~~ieaLadGgVkmGlPr~lA~~laaqtllGAakMVl~s~qHP~~Lkd~V~SPgG~TI~glh 239 (267)
T KOG3124|consen 160 EKCIDAVTGLSGSGPAYVFVAIEALADGGVKMGLPRQLAYRLAAQTLLGAAKMVLASGQHPAQLKDDVCSPGGTTIYGLH 239 (267)
T ss_pred HHhhhHHhhccCCcHHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHHHhccCCcHHHhCCCCCCCcchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHhhcC
Q 024016 249 ELEKSGFRGILMNAVVAAAKRSRELS 274 (274)
Q Consensus 249 ~l~~~~~~~~~~~a~~~~~~r~~~~~ 274 (274)
.||+++|+..+.+|++++..|++||+
T Consensus 240 ~LE~ggfRs~linaVeaa~~r~~el~ 265 (267)
T KOG3124|consen 240 ALEKGGFRSGLINAVEAATKRARELG 265 (267)
T ss_pred HHHhCCchhHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999986
No 11
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=100.00 E-value=9.4e-42 Score=289.16 Aligned_cols=250 Identities=23% Similarity=0.343 Sum_probs=222.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-c-CceeccCchhhccCCCEEEEeeCcccHHHHH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-I-GVKVLSDNNAVVEYSDVVVFSVKPQVVKDVA 88 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~-g~~~~~~~~~~~~~aDiIil~v~~~~~~~v~ 88 (274)
|||||||+|+||.+|+++|.+.|+ ....+.+| +|++++.+.+.+ . ++.++.++.++++++|+||+|+||+.+.+++
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~-~~~~i~v~-~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~p~~~~~vl 78 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPA-DVSEIIVS-PRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVRPQIAEEVL 78 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCC-ChheEEEE-CCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeCHHHHHHHH
Confidence 489999999999999999999986 33457899 999999888877 3 5777778888889999999999999999999
Q ss_pred HHhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHhhcCCceEEecCCCCCHHHHHHHHHHhhhcCCe-EE
Q 024016 89 MQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKI-WR 166 (274)
Q Consensus 89 ~~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~g~~-~~ 166 (274)
.++. +.++++|||++++++.+.++++++ +.+++|.||++|...+.|.+.++++ .+.++++|+.+|.. +.
T Consensus 79 ~~l~--~~~~~~vis~~ag~~~~~l~~~~~~~~~~~r~~P~~~~a~~~g~t~~~~~-------~~~~~~l~~~lG~~~~~ 149 (258)
T PRK06476 79 RALR--FRPGQTVISVIAATDRAALLEWIGHDVKLVRAIPLPFVAERKGVTAIYPP-------DPFVAALFDALGTAVEC 149 (258)
T ss_pred HHhc--cCCCCEEEEECCCCCHHHHHHHhCCCCCEEEECCCChhhhCCCCeEecCC-------HHHHHHHHHhcCCcEEE
Confidence 8873 568899999999999999999887 4589999999999988888887643 25899999999987 45
Q ss_pred cCccchhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH-HHhcCCChHHHHHhcCCCCchHHH
Q 024016 167 ADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASM-VTKSGKHPGQLKDDVASPGGTTIA 245 (274)
Q Consensus 167 ~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~t~~ 245 (274)
.+|+++|.+++++ ++++|++.+++++.+++++.|++++++++++.+++.|+.++ +.+.+.+|..++++++||||+|++
T Consensus 150 ~~e~~~d~~~a~~-s~~a~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~~G~~~l~~~~~~~~~~~l~~~v~spgGtT~~ 228 (258)
T PRK06476 150 DSEEEYDLLAAAS-ALMATYFGILETATGWLEEQGLKRQKARAYLAPLFASLAQDAVRSTKTDFSALSREFSTKGGLNEQ 228 (258)
T ss_pred CChHhccceeehh-ccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhCCCCCchHHH
Confidence 5688999999986 57888888999999999999999999999999999999999 577788999999999999999999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhh
Q 024016 246 GIHELEKSGFRGILMNAVVAAAKRSRE 272 (274)
Q Consensus 246 ~l~~l~~~~~~~~~~~a~~~~~~r~~~ 272 (274)
+|+.||+.+++..+.++++++++|++-
T Consensus 229 gl~~le~~~~~~~~~~a~~aa~~r~~~ 255 (258)
T PRK06476 229 VLNDFSRQGGYAALTDALDRVLRRING 255 (258)
T ss_pred HHHHHHHCChHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999863
No 12
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=100.00 E-value=6.2e-41 Score=282.32 Aligned_cols=241 Identities=28% Similarity=0.481 Sum_probs=216.1
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCC-CHHHHHHHHH-cCceeccCchhhccCCCEEEEeeCcccHH
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS-NLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVVK 85 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r-~~~~~~~l~~-~g~~~~~~~~~~~~~aDiIil~v~~~~~~ 85 (274)
|+.+||+|||+|+||.+++.+|.++|+....+++++ +| ++++.+.+.+ .++..+++..++++++|+||+|+|++.++
T Consensus 2 m~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~~~~~ 80 (245)
T PRK07634 2 LKKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVS-NRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPPSAHE 80 (245)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEE-CCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCHHHHH
Confidence 456899999999999999999998874222347788 77 5778887776 67777778888889999999999999999
Q ss_pred HHHHHhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHhhcCCceEEecCCCCCHHHHHHHHHHhhhcCCe
Q 024016 86 DVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKI 164 (274)
Q Consensus 86 ~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~g~~ 164 (274)
+++.++.++++ +++|||+++|++.+.+++.++ +.+++|.|||.+..++.|.+.++...+.+++..+.++++|+.+|.+
T Consensus 81 ~v~~~l~~~~~-~~~vis~~~gi~~~~l~~~~~~~~~v~r~~Pn~a~~v~~g~~~~~~~~~~~~~~~~~v~~lf~~~G~~ 159 (245)
T PRK07634 81 ELLAELSPLLS-NQLVVTVAAGIGPSYLEERLPKGTPVAWIMPNTAAEIGKSISLYTMGQSVNETHKETLQLILKGIGTS 159 (245)
T ss_pred HHHHHHHhhcc-CCEEEEECCCCCHHHHHHHcCCCCeEEEECCcHHHHHhcCCeEEeeCCCCCHHHHHHHHHHHHhCCCE
Confidence 99999988765 679999999999999999887 3578999999999999999888877778899999999999999998
Q ss_pred EEcCccchhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHH
Q 024016 165 WRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTI 244 (274)
Q Consensus 165 ~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~ 244 (274)
++++|++++.++++++|+|+|++.+++++.+++++.|++++++++++.+++.|+..++.+ +.+|+.++++++||||+|+
T Consensus 160 ~~~~e~~~~~~~a~~gs~pa~~~~~~~a~~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~-~~~~~~l~~~v~spgG~T~ 238 (245)
T PRK07634 160 QLCTEEEVHQLTAVTGSAPAFLYYFAESLIEATKSYGVDEETAKHLVIQMISGSASMLEQ-TQDPANLREQVTTPGGSTA 238 (245)
T ss_pred EEECHHHcchHHhhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhC-CCCHHHHHHhCCCCChHHH
Confidence 778899999999999999999999999999999999999999999999999999999875 6799999999999999999
Q ss_pred HHHHHHH
Q 024016 245 AGIHELE 251 (274)
Q Consensus 245 ~~l~~l~ 251 (274)
++++.||
T Consensus 239 ~gl~~l~ 245 (245)
T PRK07634 239 EGLKALY 245 (245)
T ss_pred HHHHHhC
Confidence 9999885
No 13
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=100.00 E-value=5.8e-32 Score=233.00 Aligned_cols=220 Identities=18% Similarity=0.227 Sum_probs=189.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcc-cHHHH
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VVKDV 87 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~-~~~~v 87 (274)
+.+||+|||+|+||.+++++|.++|+ +|+++.+++.++.+.+.+.|+.+. ++.+++++||+|++++||+ +...+
T Consensus 2 ~~kkIgiIG~G~mG~AiA~~L~~sG~----~Viv~~~~~~~~~~~a~~~Gv~~~-s~~ea~~~ADiVvLaVpp~~~~~~v 76 (314)
T TIGR00465 2 KGKTVAIIGYGSQGHAQALNLRDSGL----NVIVGLRKGGASWKKATEDGFKVG-TVEEAIPQADLIMNLLPDEVQHEVY 76 (314)
T ss_pred CcCEEEEEeEcHHHHHHHHHHHHCCC----eEEEEECcChhhHHHHHHCCCEEC-CHHHHHhcCCEEEEeCCcHhHHHHH
Confidence 45799999999999999999999998 787762555556666667788764 5778889999999999999 67777
Q ss_pred HHHhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHh-h------cCCceEEe-cCCCCCHHHHHHHHHHh
Q 024016 88 AMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSA-V------GEAATVMS-LGGTATEEDGELIGKLF 158 (274)
Q Consensus 88 ~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~-~------~~g~~~i~-~~~~~~~~~~~~v~~ll 158 (274)
+.++.+.++++. +||+..|+++..++..+| +.+++|.|||.|.+ + +.|++.++ .+.+.+.++.+.+..+|
T Consensus 77 ~~ei~~~l~~g~-iVs~aaG~~i~~~~~~~~~~~~VvrvmPn~p~~~vr~~~~~G~G~~~l~a~~~~~~~~~~~~~~~~~ 155 (314)
T TIGR00465 77 EAEIQPLLKEGK-TLGFSHGFNIHFVQIVPPKDVDVVMVAPKGPGTLVREEYKEGFGVPTLIAVEQDPTGEAMAIALAYA 155 (314)
T ss_pred HHHHHhhCCCCc-EEEEeCCccHhhccccCCCCCcEEEECCCCCcHHHHHHhhcCCCeeEEEEecCCCCHHHHHHHHHHH
Confidence 778888887774 899999999999988887 56899999999998 4 99998885 77777889999999999
Q ss_pred hhcCCe-------E---EcCccchhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCC
Q 024016 159 GSVGKI-------W---RADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKH 228 (274)
Q Consensus 159 ~~~g~~-------~---~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (274)
+.+|.. . +++|+++|..++++|++|+|++.+++++ ++.|++++.++.++.+++.++..++.++|.
T Consensus 156 ~~iG~~~~~~~~t~f~~e~~edl~~~~t~l~Gs~pa~v~~~~eal----v~~G~~~e~A~~~~~~~~~g~~~l~~e~g~- 230 (314)
T TIGR00465 156 KAIGGGRAGVLETTFKEETESDLFGEQAVLCGGLTALIKAGFDTL----VEAGYQPELAYFETVHELKLIVDLIYEGGI- 230 (314)
T ss_pred HHcCCCccceeechhHhhhhHHhcCcchhHHhHHHHHHHHHHHHH----HHcCCCHHHHHHHHHHHHHHHHHHHHHhcH-
Confidence 999976 3 6678899999999999999998887666 689999999999999999999999988775
Q ss_pred hHHHHHhcCCCC
Q 024016 229 PGQLKDDVASPG 240 (274)
Q Consensus 229 ~~~~~~~~~~~~ 240 (274)
..+++.+++..
T Consensus 231 -~~l~~~Vssta 241 (314)
T TIGR00465 231 -TGMRDRISNTA 241 (314)
T ss_pred -HHHHHHcCCHH
Confidence 58899998743
No 14
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=99.97 E-value=7.6e-29 Score=208.47 Aligned_cols=250 Identities=16% Similarity=0.204 Sum_probs=187.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHH-HHHHHHcCceeccCchhhccCCCEEEEeeC-cccHHHHH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKR-RDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVVKDVA 88 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~-~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~~~v~ 88 (274)
+||+|||+|.||.+||++|+++|| +|++| ||++++ .+.+.+.|+..+.++.|+++.+|+||+||+ ++++++|+
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~----~v~v~-~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~ 75 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGH----EVTVY-NRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVL 75 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCC----EEEEE-eCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHH
Confidence 589999999999999999999999 99999 999999 555666899999999999999999999997 56799999
Q ss_pred H---HhccccCCCCEEEEecCCCCHHH---HHHhhC--CCceEEE-cCCcHHhhcCCceEEecCCCCCHHHHHHHHHHhh
Q 024016 89 M---QIRPLLSRKKLLVSVAAGVKLKD---LQEWTG--HSRFIRV-MPNTPSAVGEAATVMSLGGTATEEDGELIGKLFG 159 (274)
Q Consensus 89 ~---~i~~~l~~~~~vis~~~g~~~~~---l~~~~~--~~~~~~~-~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~ 159 (274)
. .+...+++|+++|++ ++++++. +.+.+. +..++.. +...+.....|...+..| .+++.+++++++|+
T Consensus 76 ~g~~g~~~~~~~G~i~IDm-STisp~~a~~~a~~~~~~G~~~lDAPVsGg~~~A~~GtLtimvG--G~~~~f~r~~pvl~ 152 (286)
T COG2084 76 FGENGLLEGLKPGAIVIDM-STISPETARELAAALAAKGLEFLDAPVSGGVPGAAAGTLTIMVG--GDAEAFERAKPVLE 152 (286)
T ss_pred hCccchhhcCCCCCEEEEC-CCCCHHHHHHHHHHHHhcCCcEEecCccCCchhhhhCceEEEeC--CCHHHHHHHHHHHH
Confidence 4 577788899999987 5566543 333332 2334332 112222334555444433 27999999999999
Q ss_pred hcCC-eEEcCccchhhHHHhhcchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHh
Q 024016 160 SVGK-IWRADEKLFDAITGLSGSGPAYIFLAIEALADG---GVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDD 235 (274)
Q Consensus 160 ~~g~-~~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~---~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (274)
.+|+ ++++++......+.++ .+.++...+.++.|+ +++.|+|++.+++++..+..++..+-. . . ..+.+.
T Consensus 153 ~~g~~i~~~G~~G~G~~~Kl~--nn~l~~~~~~a~aEAl~la~k~Gld~~~~~~vi~~~~~~s~~~e~-~--~-~~m~~~ 226 (286)
T COG2084 153 AMGKNIVHVGPVGAGQAAKLA--NNILLAGNIAALAEALALAEKAGLDPDVVLEVISGGAAGSWILEN-Y--G-PRMLEG 226 (286)
T ss_pred HhcCceEEECCCCchHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccccCChHHHh-h--c-chhhcC
Confidence 9997 5899988666666654 345566667777776 469999999999999998777765532 1 2 445566
Q ss_pred cCCCCchHHHHHHHH-------HhCCHHHHHHHHHHHHHHHHhhcC
Q 024016 236 VASPGGTTIAGIHEL-------EKSGFRGILMNAVVAAAKRSRELS 274 (274)
Q Consensus 236 ~~~~~g~t~~~l~~l-------~~~~~~~~~~~a~~~~~~r~~~~~ 274 (274)
.++|++.....++.| ++.++...+.....+.|+.+...|
T Consensus 227 ~~~p~F~v~~~~KDl~la~~~A~~~g~~lP~~~~~~~ly~~~~~~G 272 (286)
T COG2084 227 DFSPGFAVDLMLKDLGLALDAAKELGAPLPLTALAAELYAKAAAAG 272 (286)
T ss_pred CCCcchhHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcC
Confidence 689999888877665 344777778888888888776653
No 15
>PRK06545 prephenate dehydrogenase; Validated
Probab=99.96 E-value=1.2e-27 Score=211.49 Aligned_cols=247 Identities=16% Similarity=0.185 Sum_probs=188.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCce----eccCchhhccCCCEEEEeeCcccHHH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK----VLSDNNAVVEYSDVVVFSVKPQVVKD 86 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~----~~~~~~~~~~~aDiIil~v~~~~~~~ 86 (274)
+||+|||+|.||++|+++|.++|+ ++.+| ++++++.+.....+.. ..++..+++++||+||+|+|++.+.+
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~----~v~i~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~~~~~~ 75 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGP----DVFII-GYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPVDATAA 75 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCC----CeEEE-EeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCHHHHHH
Confidence 479999999999999999999998 88888 7776654443333332 23455677889999999999999999
Q ss_pred HHHHhcc-ccCCCCEEEEecCCCCHHH---HHHhhC-CCceEEEcCCcH-----------HhhcCCceEEecCCCCCHHH
Q 024016 87 VAMQIRP-LLSRKKLLVSVAAGVKLKD---LQEWTG-HSRFIRVMPNTP-----------SAVGEAATVMSLGGTATEED 150 (274)
Q Consensus 87 v~~~i~~-~l~~~~~vis~~~g~~~~~---l~~~~~-~~~~~~~~p~~~-----------~~~~~g~~~i~~~~~~~~~~ 150 (274)
++.++.+ .++++. +|+.+++++... +++.++ ..+++..||... ..+....+++++.+..+++.
T Consensus 76 vl~~l~~~~l~~~~-ivtDv~SvK~~i~~~~~~~~~~~~~~ig~HPMaG~e~sG~~aa~~~lf~g~~~il~~~~~~~~~~ 154 (359)
T PRK06545 76 LLAELADLELKPGV-IVTDVGSVKGAILAEAEALLGDLIRFVGGHPMAGSHKSGVAAARADLFENAPWVLTPDDHTDPDA 154 (359)
T ss_pred HHHHHhhcCCCCCc-EEEeCccccHHHHHHHHHhcCCCCeEEeeCCcCcCchhhHHHhcHHHHCCCcEEEecCCCCCHHH
Confidence 9999987 477775 555567776543 344433 346777776421 11233456778777778999
Q ss_pred HHHHHHHhhhcCCe-EEcCccchhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 024016 151 GELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHP 229 (274)
Q Consensus 151 ~~~v~~ll~~~g~~-~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (274)
++.++++|+.+|.. +++++++||.++++++|+|+|++. +| +...+.+.+.+..+..++|+++++++. .+|
T Consensus 155 ~~~v~~l~~~lGa~~v~~~~~~HD~~~A~vshlPh~ia~---al---~~~~~~~~~~~~~la~~gfrd~tRia~---~~p 225 (359)
T PRK06545 155 VAELKDLLSGTGAKFVVLDAEEHDRAVALVSHLPHILAS---SL---AARLAGEHPLALRLAAGGFRDITRIAS---SDP 225 (359)
T ss_pred HHHHHHHHHHcCCEEEECCHHHHhHHHhHhccHHHHHHH---HH---HHhhccCchHHHhhhcccccCCccccC---CCH
Confidence 99999999999976 679999999999999999998875 33 344566778888999999999999984 689
Q ss_pred HHHHHhcCCCCchHHHHHHHHHhC--CHHHHHHH----HHHHHHHHHhh
Q 024016 230 GQLKDDVASPGGTTIAGIHELEKS--GFRGILMN----AVVAAAKRSRE 272 (274)
Q Consensus 230 ~~~~~~~~~~~g~t~~~l~~l~~~--~~~~~~~~----a~~~~~~r~~~ 272 (274)
.+|++.+.+|++.+...|+.+++. .++..+.+ .+.+.++++++
T Consensus 226 ~~w~di~~~N~~~~~~~l~~~~~~l~~~~~~l~~~d~~~l~~~~~~~~~ 274 (359)
T PRK06545 226 GMWRDILESNAEALLDALDEWIEDLDRARDALESGDAEAIAELFDAGKA 274 (359)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999988888764 55555543 56666666654
No 16
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=99.95 E-value=3.9e-27 Score=201.70 Aligned_cols=250 Identities=16% Similarity=0.201 Sum_probs=185.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCce-eccCchhhccCCCEEEEeeCcccHHHHHH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK-VLSDNNAVVEYSDVVVFSVKPQVVKDVAM 89 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~-~~~~~~~~~~~aDiIil~v~~~~~~~v~~ 89 (274)
|||+|||+|.||.+|+..|.++|+ +|++| +|++++.+.+.+.|.. ...+..+.++++|+||+|+|++.+.++++
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~----~V~~~-d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~~~~~~~~ 75 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGH----TVYGV-SRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIGLLLPPSE 75 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHHHHHHHHH
Confidence 589999999999999999999998 99999 9999998888877642 23333456789999999999999999999
Q ss_pred HhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHH---h--------hcCCceEEecCCCCCHHHHHHHHHH
Q 024016 90 QIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPS---A--------VGEAATVMSLGGTATEEDGELIGKL 157 (274)
Q Consensus 90 ~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~---~--------~~~g~~~i~~~~~~~~~~~~~v~~l 157 (274)
++.+.++++.+| +.+++++.+.++.... ..++++.||.... . ......++++.+..+++.++.++++
T Consensus 76 ~l~~~l~~~~ii-~d~~Svk~~~~~~~~~~~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~~~~~~~~v~~l 154 (279)
T PRK07417 76 QLIPALPPEAIV-TDVGSVKAPIVEAWEKLHPRFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENTDLNALAIVEEL 154 (279)
T ss_pred HHHHhCCCCcEE-EeCcchHHHHHHHHHHhhCCceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCCCCHHHHHHHHHH
Confidence 998888777655 5567777766665443 2368888874311 1 1223345667777788999999999
Q ss_pred hhhcCCe-EEcCccchhhHHHhhcchHHHHHHHHHHHHHHHHH-cCCCH-HHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Q 024016 158 FGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADGGVA-AGLPR-ELALGLASQTVLGAASMVTKSGKHPGQLKD 234 (274)
Q Consensus 158 l~~~g~~-~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~-~Gl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (274)
++.+|.. ++++++.||..+++++++|++++.. ++..... ..-+. +.+..+..++|++++|++. .+|++|.+
T Consensus 155 ~~~lG~~~v~~~~~~hD~~~a~~shlp~~~a~~---l~~~~~~~~~~~~~~~~~~~~~~gfrd~tRia~---~~p~~w~~ 228 (279)
T PRK07417 155 AVSLGSKIYTADPEEHDRAVALISHLPVMVSAA---LIQTCGTEKDPSVLKLAQNLASSGFADTSRVGG---GNPELGVM 228 (279)
T ss_pred HHHcCCEEEEcCHHHHHHHHHHHcchHHHHHHH---HHHHHhhcccchhhHHhhhhccCcccccccccC---CChHHHHH
Confidence 9999976 7899999999999999999987643 3222211 11111 2235788999999999874 68999999
Q ss_pred hcCCCCchHHHHHHHHHhC--CHHHHHH----HHHHHHHHHHhh
Q 024016 235 DVASPGGTTIAGIHELEKS--GFRGILM----NAVVAAAKRSRE 272 (274)
Q Consensus 235 ~~~~~~g~t~~~l~~l~~~--~~~~~~~----~a~~~~~~r~~~ 272 (274)
.+.++.....+.|+.+++. .++..+. +.+.+.++++++
T Consensus 229 i~~~N~~~i~~~l~~~~~~l~~~~~~l~~~d~~~l~~~~~~~~~ 272 (279)
T PRK07417 229 MAEYNRAALLRSLASYRQSLDQLEELIEQENWSALEQKLEQTQE 272 (279)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999887777777776553 4444443 256666666654
No 17
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.95 E-value=2.1e-27 Score=228.56 Aligned_cols=249 Identities=18% Similarity=0.220 Sum_probs=197.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCce--eccCchhhccCCCEEEEeeCcccHHHHH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK--VLSDNNAVVEYSDVVVFSVKPQVVKDVA 88 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~--~~~~~~~~~~~aDiIil~v~~~~~~~v~ 88 (274)
.||+|||+|+||.+++++|.+.|+ ..+|++| +|++++.+.+.+.|+. ..++..++++++|+||+|+|++.+++++
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~--~~~V~~~-d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~~~~~~vl 80 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGL--AREVVAV-DRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPVLAMEKVL 80 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCC--CCEEEEE-ECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCHHHHHHHH
Confidence 689999999999999999999984 1279999 9999988887777764 3345667788999999999999999999
Q ss_pred HHhccccCCCCEEEEecCCCC---HHHHHHhhCCCceEEEcCCcHHhh--------------cCCceEEecCCCCCHHHH
Q 024016 89 MQIRPLLSRKKLLVSVAAGVK---LKDLQEWTGHSRFIRVMPNTPSAV--------------GEAATVMSLGGTATEEDG 151 (274)
Q Consensus 89 ~~i~~~l~~~~~vis~~~g~~---~~~l~~~~~~~~~~~~~p~~~~~~--------------~~g~~~i~~~~~~~~~~~ 151 (274)
.++.++++++.+ |+..++++ .+.+++.++. ..+|++|++|... ..+..++++....+++..
T Consensus 81 ~~l~~~~~~~~i-i~d~~svk~~~~~~l~~~~~~-~~~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~~~~~~ 158 (735)
T PRK14806 81 ADLKPLLSEHAI-VTDVGSTKGNVVDAARAVFGE-LPAGFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAETDPAAL 158 (735)
T ss_pred HHHHHhcCCCcE-EEEcCCCchHHHHHHHHhccc-cCCeEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCCCHHHH
Confidence 999988877754 55556666 5566666653 3567888888541 122346677667788899
Q ss_pred HHHHHHhhhcCCe-EEcCccchhhHHHhhcchHH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 024016 152 ELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPA-YIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHP 229 (274)
Q Consensus 152 ~~v~~ll~~~g~~-~~~~e~~~~~~~a~~~~~~~-~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (274)
+.++++|+.+|.. +++++++||.++++++|+|+ |.+.+++++. +.|.. +.+.++..++|+++++++ +.+|
T Consensus 159 ~~~~~l~~~~G~~~~~~~~~~hD~~~a~~~~~ph~~~~~l~~~l~----~~~~~-~~~~~~a~~~f~~~tRia---~~~p 230 (735)
T PRK14806 159 ARVDRLWRAVGADVLHMDVAHHDEVLAATSHLPHLLAFSLVDQLA----NREDN-LDIFRYAAGGFRDFTRIA---ASDP 230 (735)
T ss_pred HHHHHHHHHcCCEEEEcCHHHHhHHHHHhcchHHHHHHHHHHHHh----hcCCh-hHHHhhhccchhcccccc---cCCH
Confidence 9999999999975 78999999999999999998 5555555554 34432 356789999999999987 4689
Q ss_pred HHHHHhcCCCCchHHHHHHHHHh--CCHHHHHHH----HHHHHHHHHhh
Q 024016 230 GQLKDDVASPGGTTIAGIHELEK--SGFRGILMN----AVVAAAKRSRE 272 (274)
Q Consensus 230 ~~~~~~~~~~~g~t~~~l~~l~~--~~~~~~~~~----a~~~~~~r~~~ 272 (274)
..|.+.+.+|++++.++|+.+++ .+|+..+.+ .+.+.++++++
T Consensus 231 ~~~~di~~~n~~~~~~~l~~~~~~l~~~~~~l~~~d~~~~~~~~~~~~~ 279 (735)
T PRK14806 231 VMWHDIFLANKEAVLRALDHFRDDLDALRAAIEAGDGHALLGVFTRARA 279 (735)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999999999999999988 578887773 66777776654
No 18
>PRK08507 prephenate dehydrogenase; Validated
Probab=99.95 E-value=2.2e-26 Score=196.84 Aligned_cols=248 Identities=17% Similarity=0.241 Sum_probs=186.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCce-eccCchhhccCCCEEEEeeCcccHHHHHH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK-VLSDNNAVVEYSDVVVFSVKPQVVKDVAM 89 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~-~~~~~~~~~~~aDiIil~v~~~~~~~v~~ 89 (274)
|||+|||+|+||++|+.+|.++|+ ..+|++| +|++++.+.+.+.|+. ...++.++. ++|+||+|||++.+.+++.
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~--~~~v~~~-d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp~~~~~~~~~ 76 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGL--ISKVYGY-DHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIPVDAIIEILP 76 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCC--CCEEEEE-cCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCcHHHHHHHHH
Confidence 489999999999999999999986 2268899 9999998888777763 344566654 5999999999999999999
Q ss_pred HhccccCCCCEEEEecCCCCHHHHHHhhC---CCceEEEcCCc------HHh----hcCCc-eEEecCCCCCHHHHHHHH
Q 024016 90 QIRPLLSRKKLLVSVAAGVKLKDLQEWTG---HSRFIRVMPNT------PSA----VGEAA-TVMSLGGTATEEDGELIG 155 (274)
Q Consensus 90 ~i~~~l~~~~~vis~~~g~~~~~l~~~~~---~~~~~~~~p~~------~~~----~~~g~-~~i~~~~~~~~~~~~~v~ 155 (274)
++.+ ++++++|+++ +++... +.+.+. ..++++.||+. |.. ..+|. .++++.+..+++.++.++
T Consensus 77 ~l~~-l~~~~iv~d~-gs~k~~-i~~~~~~~~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~~~~~~~~~~~~v~ 153 (275)
T PRK08507 77 KLLD-IKENTTIIDL-GSTKAK-IIESVPKHIRKNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCDVEKSGEKHQERAK 153 (275)
T ss_pred HHhc-cCCCCEEEEC-ccchHH-HHHHHHHhcCCCEEecCCcCcCchhhHHhccHHHhCCCeEEEecCCCCCHHHHHHHH
Confidence 9988 8889888874 444333 322222 24688999973 322 12443 456666666788899999
Q ss_pred HHhhhcCC-eEEcCccchhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Q 024016 156 KLFGSVGK-IWRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKD 234 (274)
Q Consensus 156 ~ll~~~g~-~~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (274)
++|+.+|. +++++++.||..++++++.|++++. ++++... .+.+.+....+..++|+++++++. .+|.+|.+
T Consensus 154 ~l~~~~G~~~~~~~~~~hD~~~a~vs~lph~~a~---~l~~~~~-~~~~~~~~~~~~~~gfrd~tria~---~~p~l~~~ 226 (275)
T PRK08507 154 EIFSGLGMRIVYMDAKEHDLHAAYISHLPHIISF---ALANTVL-KEEDERNIFDLAGGGFRSMSRLAK---SSPAMWSD 226 (275)
T ss_pred HHHHHhCCEEEEeCHHHHHHHHHHHhHHHHHHHH---HHHHHHH-hcCChHHHHhhcccchhhhhhccc---CCHHHHHH
Confidence 99999995 4889999999999999999875543 4555443 466777778999999999999874 68999999
Q ss_pred hcCCCCchHHHHHHHHHhC--CHHHHHH----HHHHHHHHHHhh
Q 024016 235 DVASPGGTTIAGIHELEKS--GFRGILM----NAVVAAAKRSRE 272 (274)
Q Consensus 235 ~~~~~~g~t~~~l~~l~~~--~~~~~~~----~a~~~~~~r~~~ 272 (274)
.+.++.......|+.+++. .+...+. +.+.+.++++++
T Consensus 227 i~~~N~~~~~~~l~~~~~~l~~~~~~l~~~d~~~~~~~~~~~~~ 270 (275)
T PRK08507 227 IFKQNKENVLEAIDEFIKELEQFKQLIENEDWEELEEWMEQANK 270 (275)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999887777776666553 3444442 355555655554
No 19
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=99.95 E-value=4.3e-26 Score=188.56 Aligned_cols=251 Identities=19% Similarity=0.207 Sum_probs=179.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccHHHH
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVVKDV 87 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~~~v 87 (274)
+.++|||||+|+||++|+.+|+++|| .|+|| ||+.++.+.|++.|+++.++|.|+++.||+||.||| |.+++++
T Consensus 34 s~~~iGFIGLG~MG~~M~~nLik~G~----kVtV~-dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v 108 (327)
T KOG0409|consen 34 SKTRIGFIGLGNMGSAMVSNLIKAGY----KVTVY-DRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDV 108 (327)
T ss_pred ccceeeEEeeccchHHHHHHHHHcCC----EEEEE-eCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHH
Confidence 46799999999999999999999999 99999 999999999999999999999999999999999997 6678888
Q ss_pred HHH---hccccCCCCEE-EEecCCCCHH---HHHHhhC--CCceEEEc-CCcHHhhcCCceEEecCCCCCHHHHHHHHHH
Q 024016 88 AMQ---IRPLLSRKKLL-VSVAAGVKLK---DLQEWTG--HSRFIRVM-PNTPSAVGEAATVMSLGGTATEEDGELIGKL 157 (274)
Q Consensus 88 ~~~---i~~~l~~~~~v-is~~~g~~~~---~l~~~~~--~~~~~~~~-p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~l 157 (274)
+.+ +...+++++.. |+. ++++++ ++++.+. +.+++..- ........+|...+..+ .+++.++++.++
T Consensus 109 ~~g~~Gvl~g~~~g~~~~vDm-STidp~~s~ei~~~i~~~~~~~vDAPVSGg~~~A~~G~Ltimag--Gde~~~~~~~~~ 185 (327)
T KOG0409|consen 109 LLGKSGVLSGIRPGKKATVDM-STIDPDTSLEIAKAISNKGGRFVDAPVSGGVKGAEEGTLTIMAG--GDEALFEAASPV 185 (327)
T ss_pred hcCCCcceeeccCCCceEEec-cccCHHHHHHHHHHHHhCCCeEEeccccCCchhhhcCeEEEEec--CcHHHHHHHHHH
Confidence 854 44455677666 554 556654 4444433 34444321 11112234666655554 489999999999
Q ss_pred hhhcCCe-EEcCccchhhHHHhhcchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Q 024016 158 FGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADG---GVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLK 233 (274)
Q Consensus 158 l~~~g~~-~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~---~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (274)
|+.+|+. +++++........++ .+-.+...+.+++|+ +.+.|++...+.+++..+-..+..+ +. .-| .+.
T Consensus 186 ~~~mGk~~~~~G~~GnG~~~Kl~--nnm~~g~~M~g~aEal~la~r~GLd~~~l~eiln~G~~~S~~~-~~--~~p-~m~ 259 (327)
T KOG0409|consen 186 FKLMGKNVVFLGGVGNGQAAKLC--NNMLLGSSMVGLAEALALADRLGLDAKKLLEILNTGRCWSSMF-YN--PVP-GML 259 (327)
T ss_pred HHHhcceEEEecccCchHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCcccHHH-hC--cCc-hhh
Confidence 9999965 888876544444443 233444445556665 5699999999999998865555444 32 233 455
Q ss_pred HhcCCCCchHHHHHHHH-------HhCCHHHHHHHHHHHHHHHHhhc
Q 024016 234 DDVASPGGTTIAGIHEL-------EKSGFRGILMNAVVAAAKRSREL 273 (274)
Q Consensus 234 ~~~~~~~g~t~~~l~~l-------~~~~~~~~~~~a~~~~~~r~~~~ 273 (274)
+..+.|++.+....+.| ++.+..-.+....++.|++..+.
T Consensus 260 k~dy~p~f~~~~m~KDLgla~~~a~~~~~~~P~~slA~qly~~~~a~ 306 (327)
T KOG0409|consen 260 KGDYNPGFALKLMVKDLGLALNAAESVKVPMPLGSLAHQLYKSMKAL 306 (327)
T ss_pred cCCCCCcchHHHHHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHhc
Confidence 66689999888766555 22244555666777777776654
No 20
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.95 E-value=6.6e-26 Score=204.62 Aligned_cols=248 Identities=15% Similarity=0.214 Sum_probs=190.9
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeccCchhhccCCCEEEEeeCcccHHHHH
Q 024016 11 FILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVA 88 (274)
Q Consensus 11 ~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v~ 88 (274)
|||+||| +|.||.+++..|.+.|+ +|++| +|++++...+.. .|+...++..+.+.++|+||+|+|++.+.+++
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~----~V~v~-~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~~~~~~vl 75 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGF----EVIVT-GRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPINVTEDVI 75 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCC----EEEEE-ECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCHHHHHHHH
Confidence 5899997 89999999999999998 99999 999887655444 68777677778889999999999999999999
Q ss_pred HHhccccCCCCEEEEecC--CCCHHHHHHhhC-CCceEEEcCC----cHHhhcCCceEEecCCCCCHHHHHHHHHHhhhc
Q 024016 89 MQIRPLLSRKKLLVSVAA--GVKLKDLQEWTG-HSRFIRVMPN----TPSAVGEAATVMSLGGTATEEDGELIGKLFGSV 161 (274)
Q Consensus 89 ~~i~~~l~~~~~vis~~~--g~~~~~l~~~~~-~~~~~~~~p~----~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~ 161 (274)
.++.+.++++++|+++++ +...+.+++.++ +.++++.||. .|.. .....+++++++.+++.++.++++|+.+
T Consensus 76 ~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~~~~V~~HPmaGp~~~~~-~g~~~il~p~~~~~~~~~~~v~~ll~~~ 154 (437)
T PRK08655 76 KEVAPHVKEGSLLMDVTSVKERPVEAMEEYAPEGVEILPTHPMFGPRTPSL-KGQVVILTPTEKRSNPWFDKVKNFLEKE 154 (437)
T ss_pred HHHHhhCCCCCEEEEcccccHHHHHHHHHhcCCCCEEEEcCCCCCCCCccc-CCCEEEEecCCCCCHHHHHHHHHHHHHc
Confidence 999999999999998765 233456666665 4578888864 2221 2223455666656788899999999999
Q ss_pred CCe-EEcCccchhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH----HHHHHhcCCChHHHHHhc
Q 024016 162 GKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGA----ASMVTKSGKHPGQLKDDV 236 (274)
Q Consensus 162 g~~-~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 236 (274)
|.. +++++++||.+++.+++.|++++. +++.++.+.|++.+++..+..++|+.. .+++ +.+|.+|.+..
T Consensus 155 G~~v~~~~~e~HD~~~a~vs~lph~~a~---al~~~l~~~g~~~~~~~~~a~~~frd~~~~~tRIa---~~~p~lw~dI~ 228 (437)
T PRK08655 155 GARVIVTSPEEHDRIMSVVQGLTHFAYI---SIASTLKRLGVDIKESRKFASPIYELMIDIIGRIL---GQNPYLYASIQ 228 (437)
T ss_pred CCEEEECCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHcCCCHHHHHhhcChhhHHHHHHHHHHh---cCCHHHHHHHH
Confidence 965 778999999999999999987654 455566778999999999999999986 6665 46899999998
Q ss_pred CCCCchHHHHHHHHHhC--CHHHHHH----HHHHHHHHHHh
Q 024016 237 ASPGGTTIAGIHELEKS--GFRGILM----NAVVAAAKRSR 271 (274)
Q Consensus 237 ~~~~g~t~~~l~~l~~~--~~~~~~~----~a~~~~~~r~~ 271 (274)
.++. .....++.+.+. .++..+. +.+.+.+++++
T Consensus 229 ~~N~-~~~~~l~~~~~~l~~l~~~l~~~D~~~l~~~~~~a~ 268 (437)
T PRK08655 229 MNNP-QIPEIHETFIKECEELSELVKNGDREEFVERMKEAA 268 (437)
T ss_pred HhCH-HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8876 566666665543 3333333 24455555444
No 21
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=99.94 E-value=2e-25 Score=193.81 Aligned_cols=259 Identities=15% Similarity=0.219 Sum_probs=185.7
Q ss_pred CCCCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCc--eeccCchhhccCCCEEEEeeCc
Q 024016 4 FPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGV--KVLSDNNAVVEYSDVVVFSVKP 81 (274)
Q Consensus 4 ~~~~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~--~~~~~~~~~~~~aDiIil~v~~ 81 (274)
||.++ .+||+|||+|.||.+++..|.+.|+ ..+|++| +|++++.+.+.+.|+ ....+..+.++++|+||+|+|+
T Consensus 1 ~~~~~-~~~I~IIG~G~mG~sla~~l~~~g~--~~~V~~~-dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~ 76 (307)
T PRK07502 1 MSAPL-FDRVALIGIGLIGSSLARAIRRLGL--AGEIVGA-DRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPV 76 (307)
T ss_pred CCccC-CcEEEEEeeCHHHHHHHHHHHhcCC--CcEEEEE-ECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCH
Confidence 44553 4699999999999999999999884 1279999 999998888877774 3445667778899999999999
Q ss_pred ccHHHHHHHhccccCCCCEEEEecCCCCHHHHHH---hhC-CCceEEEcCCcHHh-----------hcCCceEEecCCCC
Q 024016 82 QVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQE---WTG-HSRFIRVMPNTPSA-----------VGEAATVMSLGGTA 146 (274)
Q Consensus 82 ~~~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~---~~~-~~~~~~~~p~~~~~-----------~~~g~~~i~~~~~~ 146 (274)
....+++.++.+.++++++|++ .++++.+.++. .++ +.+++..||..... ......++++....
T Consensus 77 ~~~~~v~~~l~~~l~~~~iv~d-vgs~k~~~~~~~~~~~~~~~~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~ 155 (307)
T PRK07502 77 GASGAVAAEIAPHLKPGAIVTD-VGSVKASVIAAMAPHLPEGVHFIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEGT 155 (307)
T ss_pred HHHHHHHHHHHhhCCCCCEEEe-CccchHHHHHHHHHhCCCCCeEEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCCC
Confidence 9999999988888888876665 46666554433 333 23455555542111 01122345565556
Q ss_pred CHHHHHHHHHHhhhcCCe-EEcCccchhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhc
Q 024016 147 TEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKS 225 (274)
Q Consensus 147 ~~~~~~~v~~ll~~~g~~-~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~ 225 (274)
+++.++.++++++.+|.. +++++++||..+++++++|++++..+..... .....+.+....+..++|+++.|++.
T Consensus 156 ~~~~~~~~~~l~~~lG~~~~~~~~~~hD~~~A~~s~lph~~a~~l~~~~~--~~~~~~~~~~~~~~~~gfrd~tRia~-- 231 (307)
T PRK07502 156 DPAAVARLTAFWRALGARVEEMDPEHHDLVLAITSHLPHLIAYTIVGTAD--DLERVTESEVIKYSASGFRDFTRIAA-- 231 (307)
T ss_pred CHHHHHHHHHHHHHcCCEEEEcCHHHHhHHHHHHhhHHHHHHHHHHHHHh--hhcccchHHHHHhccccccccccccc--
Confidence 788899999999999975 7889999999999999999998765432221 11233344456788899999888864
Q ss_pred CCChHHHHHhcCCCCchHHHHHHHHHhC--CHHHHHH----HHHHHHHHHHhh
Q 024016 226 GKHPGQLKDDVASPGGTTIAGIHELEKS--GFRGILM----NAVVAAAKRSRE 272 (274)
Q Consensus 226 ~~~~~~~~~~~~~~~g~t~~~l~~l~~~--~~~~~~~----~a~~~~~~r~~~ 272 (274)
.+|++|.+.+.++.......|+.+++. .++..+. +.+.+.++++++
T Consensus 232 -~~~~~w~~i~~~N~~~~~~~l~~~~~~l~~~~~~l~~~d~~~l~~~~~~~~~ 283 (307)
T PRK07502 232 -SDPTMWRDVFLHNKDAVLEMLGRFTEDLAALQRAIRWGDGDALFDLFTRTRA 283 (307)
T ss_pred -CChHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 589999999998887777777777653 4444443 255666665554
No 22
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=99.94 E-value=1.5e-24 Score=187.10 Aligned_cols=251 Identities=18% Similarity=0.166 Sum_probs=178.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcc-cHHHHHH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VVKDVAM 89 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~-~~~~v~~ 89 (274)
+||+|||+|+||.+|+.+|.++|| +|++| ||++++.+.+.+.|+....++.++++++|+||+|+|++ ++++++.
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~----~V~v~-d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~ 76 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGH----QLQVF-DVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLF 76 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCC----eEEEE-cCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHc
Confidence 489999999999999999999999 99999 99999999998888877788888899999999999987 4788874
Q ss_pred ---HhccccCCCCEEEEecCCCCH--HHHHHhhC--CCceEEE-cCCcHHhhcCCceEEecCCCCCHHHHHHHHHHhhhc
Q 024016 90 ---QIRPLLSRKKLLVSVAAGVKL--KDLQEWTG--HSRFIRV-MPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSV 161 (274)
Q Consensus 90 ---~i~~~l~~~~~vis~~~g~~~--~~l~~~~~--~~~~~~~-~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~ 161 (274)
++.+.+++++++|++++..+. ..+.+.+. +..++.+ +...+.....|...++.| .+++.+++++++|+.+
T Consensus 77 ~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~ldapV~g~~~~a~~g~l~~~~g--g~~~~~~~~~p~l~~~ 154 (296)
T PRK15461 77 GENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGRTSDNAITGTLLLLAG--GTAEQVERATPILMAM 154 (296)
T ss_pred CcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEEccCCCCHHHHHhCcEEEEEC--CCHHHHHHHHHHHHHH
Confidence 355667889999987554432 34444443 3344432 112343444565544433 2789999999999999
Q ss_pred CC-eEEcCccchhhHHHhhcchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcC
Q 024016 162 GK-IWRADEKLFDAITGLSGSGPAYIFLAIEALADG---GVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVA 237 (274)
Q Consensus 162 g~-~~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~---~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (274)
|. .+++++..-...+.++ .+.+.......+.|+ +++.|+|++.+.+++..+..++..+.. ..+..+.+..+
T Consensus 155 g~~~~~~g~~G~g~~~Kl~--~N~~~~~~~~~~~Ea~~l~~~~Gld~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~ 229 (296)
T PRK15461 155 GNELINAGGPGMGIRVKLI--NNYMSIALNALSAEAAVLCEALGLSFDVALKVMSGTAAGKGHFTT---TWPNKVLKGDL 229 (296)
T ss_pred cCCeEeeCCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccChHHHc---cccchhccCCC
Confidence 96 4788765433334332 233333334445554 569999999999999877666554432 23334555667
Q ss_pred CCCchHHHHHHH-------HHhCCHHHHHHHHHHHHHHHHhhc
Q 024016 238 SPGGTTIAGIHE-------LEKSGFRGILMNAVVAAAKRSREL 273 (274)
Q Consensus 238 ~~~g~t~~~l~~-------l~~~~~~~~~~~a~~~~~~r~~~~ 273 (274)
+|+++.....+. .++.+++..+.++..+.|+++.+.
T Consensus 230 ~~~f~~~~~~KD~~l~~~~a~~~g~~~p~~~~~~~~~~~a~~~ 272 (296)
T PRK15461 230 SPAFMIDLAHKDLGIALDVANQLHVPMPLGAASREVYSQARAA 272 (296)
T ss_pred CCCcchHHHHhhHHHHHHHHHHcCCCChHHHHHHHHHHHHHhc
Confidence 888866665444 355688888889999999888764
No 23
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=99.94 E-value=2.4e-24 Score=185.14 Aligned_cols=248 Identities=16% Similarity=0.178 Sum_probs=176.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcc-cHHHHHH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VVKDVAM 89 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~-~~~~v~~ 89 (274)
|||||||+|+||.+|+++|.++|| +|++| +|++. .+.+.+.|+....++.++++++|+||+|+|++ ++++++.
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~G~----~v~v~-~~~~~-~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~ 74 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARAGH----QLHVT-TIGPV-ADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLF 74 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCC----eEEEE-eCCHh-HHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHc
Confidence 489999999999999999999999 99999 99975 56777788888888889899999999999865 6788874
Q ss_pred H---hccccCCCCEEEEecCCCCHHH---HHHhhC--CCceEEEcCC--cHHhhcCCceEEecCCCCCHHHHHHHHHHhh
Q 024016 90 Q---IRPLLSRKKLLVSVAAGVKLKD---LQEWTG--HSRFIRVMPN--TPSAVGEAATVMSLGGTATEEDGELIGKLFG 159 (274)
Q Consensus 90 ~---i~~~l~~~~~vis~~~g~~~~~---l~~~~~--~~~~~~~~p~--~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~ 159 (274)
+ +.+.+.+|+++|++ ++++++. +.+.+. +..++.. |- .+.....|...++.+ .+++.+++++++|+
T Consensus 75 ~~~g~~~~~~~g~ivvd~-sT~~p~~~~~~~~~~~~~G~~~vda-PVsGg~~~a~~g~l~~~~g--G~~~~~~~~~p~l~ 150 (292)
T PRK15059 75 GENGCTKASLKGKTIVDM-SSISPIETKRFARQVNELGGDYLDA-PVSGGEIGAREGTLSIMVG--GDEAVFERVKPLFE 150 (292)
T ss_pred CCcchhccCCCCCEEEEC-CCCCHHHHHHHHHHHHHcCCCEEEe-cCCCCHHHHhcCcEEEEEc--CCHHHHHHHHHHHH
Confidence 3 55567789999987 4455543 334332 3455543 42 333344565443333 27899999999999
Q ss_pred hcCC-eEEcCccchhhHHHhhcchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHh
Q 024016 160 SVGK-IWRADEKLFDAITGLSGSGPAYIFLAIEALADG---GVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDD 235 (274)
Q Consensus 160 ~~g~-~~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~---~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (274)
.+|. .+++++......+.++ .+.+....+.++.|+ +++.|+|++.+++++..+...+. ++.. ..+ .+.+.
T Consensus 151 ~~g~~~~~~G~~G~g~~~Kl~--~N~l~~~~~~a~~Ea~~la~~~Gld~~~~~~~l~~~~~~s~-~~~~--~~~-~~~~~ 224 (292)
T PRK15059 151 LLGKNITLVGGNGDGQTCKVA--NQIIVALNIEAVSEALLFASKAGADPVRVRQALMGGFASSR-ILEV--HGE-RMIKR 224 (292)
T ss_pred HHcCCcEEeCCccHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCcccCH-HHHh--hch-hhhcC
Confidence 9996 4888886555555554 244444445666665 46899999999998876654443 3332 123 45555
Q ss_pred cCCCCchHHHHHHH-------HHhCCHHHHHHHHHHHHHHHHhhcC
Q 024016 236 VASPGGTTIAGIHE-------LEKSGFRGILMNAVVAAAKRSRELS 274 (274)
Q Consensus 236 ~~~~~g~t~~~l~~-------l~~~~~~~~~~~a~~~~~~r~~~~~ 274 (274)
.+.|+++.....+. .++.++...+.++..+.|+.+.+.+
T Consensus 225 ~~~~~f~l~~~~KDl~l~~~~a~~~g~~~p~~~~~~~~~~~a~~~g 270 (292)
T PRK15059 225 TFNPGFKIALHQKDLNLALQSAKALALNLPNTATCQELFNTCAANG 270 (292)
T ss_pred CCCCCCchHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcC
Confidence 56788777665444 4566888888889999898887653
No 24
>PLN02256 arogenate dehydrogenase
Probab=99.93 E-value=1.7e-24 Score=186.43 Aligned_cols=245 Identities=16% Similarity=0.128 Sum_probs=183.1
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhc-cCCCEEEEeeCcccHHH
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVV-EYSDVVVFSVKPQVVKD 86 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~-~~aDiIil~v~~~~~~~ 86 (274)
+..+||+|||+|.||.++++.|.+.|+ +|++| +|++.. +...+.|+...++..+++ .++|+||+|||++.+.+
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L~~~G~----~V~~~-d~~~~~-~~a~~~gv~~~~~~~e~~~~~aDvVilavp~~~~~~ 107 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTFVKQGH----TVLAT-SRSDYS-DIAAELGVSFFRDPDDFCEEHPDVVLLCTSILSTEA 107 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCCC----EEEEE-ECccHH-HHHHHcCCeeeCCHHHHhhCCCCEEEEecCHHHHHH
Confidence 456899999999999999999999998 99999 888643 334447777666777765 47999999999999999
Q ss_pred HHHHh-ccccCCCCEEEEecC--CCCHHHHHHhhC-CCceEEEcCCcHHhhcC----CceEEecC-----CCCCHHHHHH
Q 024016 87 VAMQI-RPLLSRKKLLVSVAA--GVKLKDLQEWTG-HSRFIRVMPNTPSAVGE----AATVMSLG-----GTATEEDGEL 153 (274)
Q Consensus 87 v~~~i-~~~l~~~~~vis~~~--g~~~~~l~~~~~-~~~~~~~~p~~~~~~~~----g~~~i~~~-----~~~~~~~~~~ 153 (274)
++.++ .+.++++++|+++.+ +...+.+++.++ +.++++.||+.+.+.+. +...+... +..+++..+.
T Consensus 108 vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~~~~~V~~HPmaG~e~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 187 (304)
T PLN02256 108 VLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPEEFDILCTHPMFGPESGKGGWAGLPFVYDKVRIGDEGEREARCER 187 (304)
T ss_pred HHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCCCCCeEEecCCCCCCCCCccccCCCeEEEecceecCCCCCHHHHHH
Confidence 99998 577889999998876 344667777776 46799999987665432 22222211 3446788999
Q ss_pred HHHHhhhcCCe-EEcCccchhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh-cCCChHH
Q 024016 154 IGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTK-SGKHPGQ 231 (274)
Q Consensus 154 v~~ll~~~g~~-~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 231 (274)
++++++.+|.. +.+++++||.++|.+++.|+.++. +|.. ...+ ...+..++|++..+++.+ ...+|.+
T Consensus 188 l~~l~~~lGa~v~~~~~eeHD~~vA~iShLpH~la~---~L~~----~~~~---~~~~~~~gfrd~tria~r~~~~~p~l 257 (304)
T PLN02256 188 FLDIFEEEGCRMVEMSCEEHDRYAAGSQFITHTVGR---ILGK----MELE---STPINTKGYETLLRLVENTSSDSFDL 257 (304)
T ss_pred HHHHHHHCCCEEEEeCHHHHhHHHHhhhhHHHHHHH---HHHH----cCCc---ccccccccHHHHHHHHHhhcCCCHHH
Confidence 99999999965 889999999999999988886544 3322 2222 146778889998888731 1258999
Q ss_pred HHHhcCCCCchHHHHHHHHHhC--CHHHHHHHHHHHHHHH
Q 024016 232 LKDDVASPGGTTIAGIHELEKS--GFRGILMNAVVAAAKR 269 (274)
Q Consensus 232 ~~~~~~~~~g~t~~~l~~l~~~--~~~~~~~~a~~~~~~r 269 (274)
|.+.+.++.... ..++.+++. .+...+..-++..+++
T Consensus 258 w~dI~~~N~~~~-~~i~~~~~~l~~~~~~l~~~~~~~~~~ 296 (304)
T PLN02256 258 YYGLFMYNPNAT-EELERLELAFDSVKKQLFGRLHDVLRK 296 (304)
T ss_pred HHHHHHHChHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 999998887777 888888774 5666666655555543
No 25
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=99.93 E-value=1.3e-23 Score=177.88 Aligned_cols=252 Identities=19% Similarity=0.252 Sum_probs=182.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC--HHHHHHHHHcCcee--ccCc-hhhccCCCEEEEeeCccc
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN--LKRRDAFESIGVKV--LSDN-NAVVEYSDVVVFSVKPQV 83 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~--~~~~~~l~~~g~~~--~~~~-~~~~~~aDiIil~v~~~~ 83 (274)
..++|+|+|+|.||+++++.|.++|+ .+.++ +++ .++.+...+.|+.- ..+. .+.+..+|+||+|||...
T Consensus 2 ~~~~v~IvG~GliG~s~a~~l~~~g~----~v~i~-g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi~~ 76 (279)
T COG0287 2 ASMKVGIVGLGLMGGSLARALKEAGL----VVRII-GRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPIEA 76 (279)
T ss_pred CCcEEEEECCchHHHHHHHHHHHcCC----eEEEE-eecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccHHH
Confidence 35799999999999999999999999 77666 554 44444444466532 1222 566778999999999999
Q ss_pred HHHHHHHhccccCCCCEEEEecCCCCH---HHHHHhhCC-CceEEEcCCcHH-----hhcCCceEEecCCCCCHHHHHHH
Q 024016 84 VKDVAMQIRPLLSRKKLLVSVAAGVKL---KDLQEWTGH-SRFIRVMPNTPS-----AVGEAATVMSLGGTATEEDGELI 154 (274)
Q Consensus 84 ~~~v~~~i~~~l~~~~~vis~~~g~~~---~~l~~~~~~-~~~~~~~p~~~~-----~~~~g~~~i~~~~~~~~~~~~~v 154 (274)
+.++++++.+++++|.+|+++. ++.. +.+++..++ .+++..||..-. .......++++.+..+.+.++++
T Consensus 77 ~~~~l~~l~~~l~~g~iv~Dv~-S~K~~v~~a~~~~~~~~~~~vg~HPM~G~~~~~~lf~~~~~vltp~~~~~~~~~~~~ 155 (279)
T COG0287 77 TEEVLKELAPHLKKGAIVTDVG-SVKSSVVEAMEKYLPGDVRFVGGHPMFGPEADAGLFENAVVVLTPSEGTEKEWVEEV 155 (279)
T ss_pred HHHHHHHhcccCCCCCEEEecc-cccHHHHHHHHHhccCCCeeEecCCCCCCcccccccCCCEEEEcCCCCCCHHHHHHH
Confidence 9999999999999999888764 3443 455555542 368888886422 12233456777776678899999
Q ss_pred HHHhhhcCCe-EEcCccchhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Q 024016 155 GKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLK 233 (274)
Q Consensus 155 ~~ll~~~g~~-~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (274)
+++|+.+|.. +++++++||..++..++.|++++. ++.....+.+........+...+|+...+++. .+|.+|.
T Consensus 156 ~~~~~~~ga~~v~~~~eeHD~~~a~vshLpH~~a~---al~~~~~~~~~~~~~~~~~as~~frd~tRia~---~~P~m~~ 229 (279)
T COG0287 156 KRLWEALGARLVEMDAEEHDRVMAAVSHLPHAAAL---ALANALAKLETEELLVLKLASGGFRDITRIAS---SDPEMYA 229 (279)
T ss_pred HHHHHHcCCEEEEcChHHHhHHHHHHHHHHHHHHH---HHHHHHHhcCcchhHHHhccccchhhHHHHHc---CChHHHH
Confidence 9999999964 889999999999999999987654 44444555554444578899999999999874 6899999
Q ss_pred HhcCCCCchHHHHHHHHHhC--CHHHHHH----HHHHHHHHHHhh
Q 024016 234 DDVASPGGTTIAGIHELEKS--GFRGILM----NAVVAAAKRSRE 272 (274)
Q Consensus 234 ~~~~~~~g~t~~~l~~l~~~--~~~~~~~----~a~~~~~~r~~~ 272 (274)
+...++.......++.+.+. .+...+. +++.+.++++++
T Consensus 230 dI~~~N~~~~l~~i~~~~~~l~~l~~~i~~~d~~~l~~~~~~a~~ 274 (279)
T COG0287 230 DIQLSNKEALLEAIERFAKSLDELKELIENGDAEALADLFEEAKK 274 (279)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 99998887666665555442 1111111 355556665543
No 26
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=99.92 E-value=5.4e-23 Score=186.40 Aligned_cols=231 Identities=11% Similarity=0.079 Sum_probs=159.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc----Cce---eccCchhhccC---CCEEEEe
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI----GVK---VLSDNNAVVEY---SDVVVFS 78 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~----g~~---~~~~~~~~~~~---aDiIil~ 78 (274)
+.++|||||+|+||++||++|+++|| +|++| ||++++++.+.+. |.. .+.++.++++. +|+||+|
T Consensus 5 ~~~~IG~IGLG~MG~~mA~nL~~~G~----~V~V~-NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~ 79 (493)
T PLN02350 5 ALSRIGLAGLAVMGQNLALNIAEKGF----PISVY-NRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIIL 79 (493)
T ss_pred CCCCEEEEeeHHHHHHHHHHHHhCCC----eEEEE-CCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEE
Confidence 45689999999999999999999999 99999 9999999988763 543 56788888875 9999999
Q ss_pred eCc-ccHHHHHHHhccccCCCCEEEEecCCCCH--HHHHHhhC--CCceEEE-cCCcHHhhcCCceEEecCCCCCHHHHH
Q 024016 79 VKP-QVVKDVAMQIRPLLSRKKLLVSVAAGVKL--KDLQEWTG--HSRFIRV-MPNTPSAVGEAATVMSLGGTATEEDGE 152 (274)
Q Consensus 79 v~~-~~~~~v~~~i~~~l~~~~~vis~~~g~~~--~~l~~~~~--~~~~~~~-~p~~~~~~~~g~~~i~~~~~~~~~~~~ 152 (274)
||+ +++++|+.++.+.+.+|+++|++++.... ..+.+.+. +..++.+ +...|.....|.++++.| ++++++
T Consensus 80 v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~gA~~G~~im~GG---~~~a~~ 156 (493)
T PLN02350 80 VKAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEEGARNGPSLMPGG---SFEAYK 156 (493)
T ss_pred CCCcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHHHhcCCCeEEecC---CHHHHH
Confidence 984 56889999999999999999988554322 23333332 3445443 223455556777555544 789999
Q ss_pred HHHHHhhhcCC-------eEEcCccchhhHHHhhcchHHHHHHHHHHHHHHH---HH-cCCCHHHHHHHHHHHHHH--HH
Q 024016 153 LIGKLFGSVGK-------IWRADEKLFDAITGLSGSGPAYIFLAIEALADGG---VA-AGLPRELALGLASQTVLG--AA 219 (274)
Q Consensus 153 ~v~~ll~~~g~-------~~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~~---~~-~Gl~~~~~~~~~~~~~~~--~~ 219 (274)
+++++|+.++. ++++++..-...+.++. +.+.+..+.+++|+. ++ .|+++++..+++.....+ .+
T Consensus 157 ~v~pvL~~ia~k~~~~~~v~~vG~~GaG~~vKlv~--N~i~~~~m~~iaEA~~l~~~~~Gld~~~l~~vf~~~~~g~~~S 234 (493)
T PLN02350 157 NIEDILEKVAAQVDDGPCVTYIGPGGAGNFVKMVH--NGIEYGDMQLISEAYDVLKSVGGLSNEELAEVFAEWNKGELES 234 (493)
T ss_pred HHHHHHHHHhhhcCCCCcEEEeCCcCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHcCCCccc
Confidence 99999999983 47888765555555543 455566677777763 45 599999988885422221 11
Q ss_pred HHHHhcCCChHHHHHh-cCCCCchHHHHHHHHHh
Q 024016 220 SMVTKSGKHPGQLKDD-VASPGGTTIAGIHELEK 252 (274)
Q Consensus 220 ~~~~~~~~~~~~~~~~-~~~~~g~t~~~l~~l~~ 252 (274)
.+++ .....+... .++|++.....++.+.+
T Consensus 235 ~lle---i~~~~l~~~d~~~~~f~l~~i~Kd~~~ 265 (493)
T PLN02350 235 FLIE---ITADIFSVKDDKGDGYLVDKILDKTGM 265 (493)
T ss_pred hHHH---HHHHHHhhcCCCCCCchHHHHHhhhcc
Confidence 2222 112233333 25566666666665553
No 27
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=99.92 E-value=6e-23 Score=176.72 Aligned_cols=248 Identities=17% Similarity=0.200 Sum_probs=177.6
Q ss_pred EEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCc-ccHHHHH---HH
Q 024016 15 FIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP-QVVKDVA---MQ 90 (274)
Q Consensus 15 iIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~-~~~~~v~---~~ 90 (274)
|||+|+||.+|+++|.++|| +|++| ||++++.+.+.+.|+....++.++++++|+||+|+|+ +++++++ .+
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~----~V~v~-dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~ 75 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGH----PVRVF-DLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEG 75 (288)
T ss_pred CCcccHhHHHHHHHHHhCCC----eEEEE-eCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcch
Confidence 69999999999999999999 99999 9999999999888988888888999999999999996 6688888 67
Q ss_pred hccccCCCCEEEEecCCCCHHH---HHHhhC--CCceEEEcC--CcHHhhcCCceEEecCCCCCHHHHHHHHHHhhhcCC
Q 024016 91 IRPLLSRKKLLVSVAAGVKLKD---LQEWTG--HSRFIRVMP--NTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGK 163 (274)
Q Consensus 91 i~~~l~~~~~vis~~~g~~~~~---l~~~~~--~~~~~~~~p--~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~g~ 163 (274)
+.+.+++++++|+++ +++++. +.+.+. +..++.. | ..+.....|...++.+. +++.+++++++|+.+|.
T Consensus 76 l~~~~~~g~~vid~s-t~~p~~~~~~~~~~~~~g~~~vda-Pv~Gg~~~a~~g~l~~~~gg--~~~~~~~~~~~l~~~g~ 151 (288)
T TIGR01692 76 ILPKVAKGSLLIDCS-TIDPDSARKLAELAAAHGAVFMDA-PVSGGVGGARAGTLTFMVGG--VAEEFAAAEPVLGPMGR 151 (288)
T ss_pred HhhcCCCCCEEEECC-CCCHHHHHHHHHHHHHcCCcEEEC-CCCCCHHHHhhCcEEEEECC--CHHHHHHHHHHHHHhcC
Confidence 877888999999875 666654 333332 3444443 3 23333445654443332 67889999999999996
Q ss_pred -eEEcCccchhhHHHhhcchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChH----HHHHh
Q 024016 164 -IWRADEKLFDAITGLSGSGPAYIFLAIEALADG---GVAAGLPRELALGLASQTVLGAASMVTKSGKHPG----QLKDD 235 (274)
Q Consensus 164 -~~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~---~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 235 (274)
.+++++......+.++. +.+.+..+.++.|+ +++.|+|++...+++..+...+..... ....|. .+.+.
T Consensus 152 ~~~~~g~~g~g~~~Kl~~--n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~~~ 228 (288)
T TIGR01692 152 NIVHCGDHGAGQAAKICN--NMLLGISMIGTAEAMALGEKLGLDPKVLFEIANTSSGRCWSSDT-YNPVPGVMPQAPASN 228 (288)
T ss_pred CeEeeCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCccCcHHHH-hCCCccccccccccC
Confidence 58888765555555543 34444445556565 569999999999998866543332221 111111 22345
Q ss_pred cCCCCchHHHHHHHH-------HhCCHHHHHHHHHHHHHHHHhhcC
Q 024016 236 VASPGGTTIAGIHEL-------EKSGFRGILMNAVVAAAKRSRELS 274 (274)
Q Consensus 236 ~~~~~g~t~~~l~~l-------~~~~~~~~~~~a~~~~~~r~~~~~ 274 (274)
.++|++.....++.+ ++.+++..+.+++.+.|+++.+.+
T Consensus 229 ~~~~~f~~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g 274 (288)
T TIGR01692 229 GYQGGFGTALMLKDLGLAQDAAKSAGAPTPLGALARQLYSLFDDKG 274 (288)
T ss_pred CCCCCcchHHHHhhHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcC
Confidence 568888776655443 556888888899999999887653
No 28
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=99.91 E-value=5.9e-23 Score=182.19 Aligned_cols=234 Identities=15% Similarity=0.132 Sum_probs=173.1
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccHHHH
Q 024016 9 ESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDV 87 (274)
Q Consensus 9 ~~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v 87 (274)
..++|+||| +|.||++++..|.++|+ +|++| +|++. ++..+++.+||+||+|+|+....++
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~----~V~~~-d~~~~-------------~~~~~~~~~aDlVilavP~~~~~~~ 158 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGY----QVRIL-EQDDW-------------DRAEDILADAGMVIVSVPIHLTEEV 158 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCC----eEEEe-CCCcc-------------hhHHHHHhcCCEEEEeCcHHHHHHH
Confidence 457999998 99999999999999999 99999 98631 2445677899999999999999999
Q ss_pred HHHhccccCCCCEEEEecCCCCH---HHHHHhhCCCceEEEcCCcHHhh--cCCceEEecCCCCCHHHHHHHHHHhhhcC
Q 024016 88 AMQIRPLLSRKKLLVSVAAGVKL---KDLQEWTGHSRFIRVMPNTPSAV--GEAATVMSLGGTATEEDGELIGKLFGSVG 162 (274)
Q Consensus 88 ~~~i~~~l~~~~~vis~~~g~~~---~~l~~~~~~~~~~~~~p~~~~~~--~~g~~~i~~~~~~~~~~~~~v~~ll~~~g 162 (274)
+.++.+ ++++++|+++ ++++. +.+.+..+ .+++..||..+... ..+...+. .+..+++.++.+.++++.+|
T Consensus 159 ~~~l~~-l~~~~iv~Dv-~SvK~~~~~~~~~~~~-~~fvg~HPm~G~~~~~~~~~~vv~-~~~~~~~~~~~~~~l~~~lG 234 (374)
T PRK11199 159 IARLPP-LPEDCILVDL-TSVKNAPLQAMLAAHS-GPVLGLHPMFGPDVGSLAKQVVVV-CDGRQPEAYQWLLEQIQVWG 234 (374)
T ss_pred HHHHhC-CCCCcEEEEC-CCccHHHHHHHHHhCC-CCEEeeCCCCCCCCcccCCCEEEE-cCCCCchHHHHHHHHHHHCC
Confidence 999988 8899988887 44443 34444444 36888888654322 12322333 33346778899999999999
Q ss_pred Ce-EEcCccchhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH----HHHHHHhcCCChHHHHHhcC
Q 024016 163 KI-WRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLG----AASMVTKSGKHPGQLKDDVA 237 (274)
Q Consensus 163 ~~-~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 237 (274)
.. ++++++.||..++++++.|++++. +++....+.+.+.+...++..++++. +++++. .+|.+|.+.+.
T Consensus 235 ~~v~~~~~~~HD~~~a~vshLpH~~a~---al~~~l~~~~~~~~~~~~~~~~~fr~~la~~tRia~---~~p~lw~dI~~ 308 (374)
T PRK11199 235 ARLHRISAVEHDQNMAFIQALRHFATF---AYGLHLAKENVDLEQLLALSSPIYRLELAMVGRLFA---QDPQLYADIIM 308 (374)
T ss_pred CEEEECCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHcCCCHHHHHHhcChHHHHHHHHHHHHHc---CCHHHHHHHHH
Confidence 65 889999999999999988877644 33333344788888777888888888 888874 68999999998
Q ss_pred CCCchHHHHHHHHHhC--CHHHHHH----HHHHHHHHHHh
Q 024016 238 SPGGTTIAGIHELEKS--GFRGILM----NAVVAAAKRSR 271 (274)
Q Consensus 238 ~~~g~t~~~l~~l~~~--~~~~~~~----~a~~~~~~r~~ 271 (274)
++.... ..++.+.+. .+...+. +.+.+.+++++
T Consensus 309 ~N~~~~-~~l~~~~~~l~~l~~~l~~~d~~~l~~~~~~a~ 347 (374)
T PRK11199 309 SSPENL-ALIKRYYQRFGEALELLEQGDKQAFIDSFRKVE 347 (374)
T ss_pred hChhHH-HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 887766 777666553 3444443 35555555554
No 29
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.91 E-value=2.4e-22 Score=173.15 Aligned_cols=206 Identities=20% Similarity=0.213 Sum_probs=157.8
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHH-HHHHHcCceeccCchhhccCCCEEEEeeCcccHHH
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRR-DAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKD 86 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~-~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~~ 86 (274)
.+.++|||||+|+||.+++++|.+.|+ +|.++ +|+.++. +...+.|+... +..+++++||+|++++|++...+
T Consensus 15 L~gktIgIIG~GsmG~AlA~~L~~sG~----~Vvv~-~r~~~~s~~~A~~~G~~~~-s~~eaa~~ADVVvLaVPd~~~~~ 88 (330)
T PRK05479 15 IKGKKVAIIGYGSQGHAHALNLRDSGV----DVVVG-LREGSKSWKKAEADGFEVL-TVAEAAKWADVIMILLPDEVQAE 88 (330)
T ss_pred hCCCEEEEEeeHHHHHHHHHHHHHCCC----EEEEE-ECCchhhHHHHHHCCCeeC-CHHHHHhcCCEEEEcCCHHHHHH
Confidence 345799999999999999999999998 99888 6664443 33444677765 78889999999999999998899
Q ss_pred HH-HHhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHh-------hcCCceEEe-cCCCCCHHHHHHHHH
Q 024016 87 VA-MQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSA-------VGEAATVMS-LGGTATEEDGELIGK 156 (274)
Q Consensus 87 v~-~~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~-------~~~g~~~i~-~~~~~~~~~~~~v~~ 156 (274)
++ +++.+.++++++| +.+.|+++..++...+ +.++++++|+.|.+ .+.|++.++ ...+.+.++.+.+..
T Consensus 89 V~~~~I~~~Lk~g~iL-~~a~G~~i~~~~~~p~~~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~av~~d~t~~a~~~a~~ 167 (330)
T PRK05479 89 VYEEEIEPNLKEGAAL-AFAHGFNIHFGQIVPPADVDVIMVAPKGPGHLVRREYEEGGGVPCLIAVHQDASGNAKDLALA 167 (330)
T ss_pred HHHHHHHhcCCCCCEE-EECCCCChhhceeccCCCCcEEEeCCCCCchhhhhhhhcCCCceEEEEecCCCCHHHHHHHHH
Confidence 98 7799999999877 7889999988876665 57899999999988 889998887 566667899999999
Q ss_pred HhhhcCCe-E-----EcC-cc---chhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh
Q 024016 157 LFGSVGKI-W-----RAD-EK---LFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTK 224 (274)
Q Consensus 157 ll~~~g~~-~-----~~~-e~---~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~ 224 (274)
+++.+|.. . ... |. .++.-..++| ++..++.+-.|.+++.|++++.++--..+-++-...++.+
T Consensus 168 l~~aiG~~~~g~~~ttf~~e~~~dl~geq~vl~g----g~~~l~~~~~e~l~eaG~~pe~Ay~e~~~e~k~i~dl~~~ 241 (330)
T PRK05479 168 YAKGIGGTRAGVIETTFKEETETDLFGEQAVLCG----GLTELIKAGFETLVEAGYQPEMAYFECLHELKLIVDLIYE 241 (330)
T ss_pred HHHHcCCCccceeeeeecccccccchhhHHHHhh----HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999953 2 222 22 3444333433 4445666777788899999998875444444444455443
No 30
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.91 E-value=4.6e-22 Score=171.60 Aligned_cols=247 Identities=18% Similarity=0.181 Sum_probs=173.5
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcc-cHHHHH--
Q 024016 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VVKDVA-- 88 (274)
Q Consensus 12 ~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~-~~~~v~-- 88 (274)
||||||+|+||.+|+.+|.+.|+ +|++| ||++++.+.+.+.|....+++.+++++||+||+|+|+. .+++++
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~----~V~~~-dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~ 75 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGY----QLHVT-TIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFG 75 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCC----eEEEE-cCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcC
Confidence 59999999999999999999999 99999 99999999998888877778888899999999999864 577776
Q ss_pred -HHhccccCCCCEEEEecCCCCHH---HHHHhhC--CCceEEEcCC--cHHhhcCCc-eEEecCCCCCHHHHHHHHHHhh
Q 024016 89 -MQIRPLLSRKKLLVSVAAGVKLK---DLQEWTG--HSRFIRVMPN--TPSAVGEAA-TVMSLGGTATEEDGELIGKLFG 159 (274)
Q Consensus 89 -~~i~~~l~~~~~vis~~~g~~~~---~l~~~~~--~~~~~~~~p~--~~~~~~~g~-~~i~~~~~~~~~~~~~v~~ll~ 159 (274)
.++.+.+++++++|++++ +++. .+.+.+. +..++. .|. .+.....|. .++..+ +++.++.++++|+
T Consensus 76 ~~~~~~~~~~g~iivd~st-~~~~~~~~l~~~l~~~g~~~~~-~pv~g~~~~a~~g~l~i~~gg---~~~~~~~~~~ll~ 150 (291)
T TIGR01505 76 ENGIIEGAKPGKTLVDMSS-ISPIESKRFAKAVKEKGIDYLD-APVSGGEIGAIEGTLSIMVGG---DQAVFDRVKPLFE 150 (291)
T ss_pred cchHhhcCCCCCEEEECCC-CCHHHHHHHHHHHHHcCCCEEe-cCCCCCHHHHhcCCEEEEecC---CHHHHHHHHHHHH
Confidence 345566788999997654 4443 4554443 334444 242 222233454 344443 6889999999999
Q ss_pred hcCC-eEEcCccchhhHHHhhcchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHh
Q 024016 160 SVGK-IWRADEKLFDAITGLSGSGPAYIFLAIEALADG---GVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDD 235 (274)
Q Consensus 160 ~~g~-~~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~---~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (274)
.+|. .+++++......+.++ .+.+....++++.|+ +++.|++++++.+++..+..++..+ .. ....+.+.
T Consensus 151 ~lg~~~~~~g~~g~a~~~Kl~--~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~l~~~~~~s~~~-~~---~~~~~~~~ 224 (291)
T TIGR01505 151 ALGKNIVLVGGNGDGQTCKVA--NQIIVALNIEAVSEALVFASKAGVDPVRVRQALRGGLAGSTVL-EV---KGERVIDR 224 (291)
T ss_pred HhcCCeEEeCCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccCHHH-Hh---hChhhhcC
Confidence 9996 4778765444444443 234444445555555 4689999999999998776654433 21 12244455
Q ss_pred cCCCCchHHHH-------HHHHHhCCHHHHHHHHHHHHHHHHhhcC
Q 024016 236 VASPGGTTIAG-------IHELEKSGFRGILMNAVVAAAKRSRELS 274 (274)
Q Consensus 236 ~~~~~g~t~~~-------l~~l~~~~~~~~~~~a~~~~~~r~~~~~ 274 (274)
.+.|++..... ++..++.++...+.++..+.|+++.+.+
T Consensus 225 ~~~~~f~~~~~~KDl~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g 270 (291)
T TIGR01505 225 TFKPGFRIDLHQKDLNLALDSAKAVGANLPNTATVQELFNTLRANG 270 (291)
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHhcC
Confidence 56787666443 4445666888888888888888887653
No 31
>PLN02858 fructose-bisphosphate aldolase
Probab=99.91 E-value=3e-22 Score=200.73 Aligned_cols=251 Identities=12% Similarity=0.107 Sum_probs=183.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccHHHH
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVVKDV 87 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~~~v 87 (274)
...||||||+|+||.+|+++|+++|| +|++| ||++++.+.+.+.|+..++++.+++++||+||+|+| ++++++|
T Consensus 3 ~~~~IGfIGLG~MG~~mA~~L~~~G~----~v~v~-dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V 77 (1378)
T PLN02858 3 SAGVVGFVGLDSLSFELASSLLRSGF----KVQAF-EISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDV 77 (1378)
T ss_pred CCCeEEEEchhHHHHHHHHHHHHCCC----eEEEE-cCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHH
Confidence 34689999999999999999999999 99999 999999999999999999999999999999999998 4568888
Q ss_pred H---HHhccccCCCCEEEEecCCCCHHH---HHHhhC--C--CceEEE-cCCcHHhhcCCceEEecCCCCCHHHHHHHHH
Q 024016 88 A---MQIRPLLSRKKLLVSVAAGVKLKD---LQEWTG--H--SRFIRV-MPNTPSAVGEAATVMSLGGTATEEDGELIGK 156 (274)
Q Consensus 88 ~---~~i~~~l~~~~~vis~~~g~~~~~---l~~~~~--~--~~~~~~-~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ 156 (274)
+ .++.+.+++|+++|++ ++++++. +.+.+. + ..++.. +...|.....|...++.|. +++.++++++
T Consensus 78 ~~g~~g~~~~l~~g~iivd~-STi~p~~~~~la~~l~~~g~~~~~lDaPVsGg~~~A~~G~L~imvGG--~~~~~~~~~p 154 (1378)
T PLN02858 78 FFGDEGAAKGLQKGAVILIR-STILPLQLQKLEKKLTERKEQIFLVDAYVSKGMSDLLNGKLMIIASG--RSDAITRAQP 154 (1378)
T ss_pred HhchhhHHhcCCCcCEEEEC-CCCCHHHHHHHHHHHHhcCCceEEEEccCcCCHHHHhcCCeEEEEcC--CHHHHHHHHH
Confidence 7 4577778899999976 4555544 333332 2 233432 2234555556665544332 7889999999
Q ss_pred HhhhcCCe-EE-cCccchhhHHHhhcchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHH
Q 024016 157 LFGSVGKI-WR-ADEKLFDAITGLSGSGPAYIFLAIEALADG---GVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQ 231 (274)
Q Consensus 157 ll~~~g~~-~~-~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~---~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (274)
+|+.+|.. ++ .++..-...+.++ .+.+.+..+.++.|+ +++.|++++.+++++..+..++..+.. . ...
T Consensus 155 ~l~~~g~~i~~~~G~~G~g~~~KL~--nN~l~~~~~~a~aEAl~la~~~Gld~~~l~~vl~~s~g~s~~~~~---~-~~~ 228 (1378)
T PLN02858 155 FLSAMCQKLYTFEGEIGAGSKVKMV--NELLEGIHLVASAEAMALGVRAGIHPWIIYDIISNAAGSSWIFKN---H-VPL 228 (1378)
T ss_pred HHHHhcCceEEecCCCCHhHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCccCHHHHh---h-hhH
Confidence 99999965 54 4664444444433 244444455666665 579999999999999988766554322 2 235
Q ss_pred HHHhcCCCCchHHHHHHHH-------HhCCHHHHHHHHHHHHHHHHhhc
Q 024016 232 LKDDVASPGGTTIAGIHEL-------EKSGFRGILMNAVVAAAKRSREL 273 (274)
Q Consensus 232 ~~~~~~~~~g~t~~~l~~l-------~~~~~~~~~~~a~~~~~~r~~~~ 273 (274)
+.+..++|++......+.+ ++.++.-.+.++..+.|+++.+.
T Consensus 229 ~~~~d~~~~F~l~l~~KDl~la~~~A~~~g~~lpl~~~a~~~~~~a~~~ 277 (1378)
T PLN02858 229 LLKDDYIEGRFLNVLVQNLGIVLDMAKSLPFPLPLLAVAHQQLISGSSS 277 (1378)
T ss_pred hhcCCCCCCchhHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhc
Confidence 5566678888877765554 55678877888888888887664
No 32
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.90 E-value=4.9e-22 Score=171.81 Aligned_cols=193 Identities=17% Similarity=0.159 Sum_probs=146.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccC---CCEEEEeeCcc-cHHH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEY---SDVVVFSVKPQ-VVKD 86 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~---aDiIil~v~~~-~~~~ 86 (274)
|||||||+|+||.+|+++|.++|+ +|++| ||++++.+.+.+.|+..+.++.+++++ +|+||+|+|++ .+++
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g~----~v~v~-dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~ 75 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDGH----EVVGY-DVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTES 75 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCCC----EEEEE-ECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHH
Confidence 489999999999999999999999 99999 999999999988898888888888765 69999999987 8999
Q ss_pred HHHHhccccCCCCEEEEecCCCC--HHHHHHhhC--CCceEEE-cCCcHHhhcCCceEEecCCCCCHHHHHHHHHHhhhc
Q 024016 87 VAMQIRPLLSRKKLLVSVAAGVK--LKDLQEWTG--HSRFIRV-MPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSV 161 (274)
Q Consensus 87 v~~~i~~~l~~~~~vis~~~g~~--~~~l~~~~~--~~~~~~~-~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~ 161 (274)
++.++.+.+++++++|++++..+ ...+.+.+. +..++.. +...|.....|.++++.| +++.+++++++|+.+
T Consensus 76 v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vdapV~G~~~~a~~g~~~~~gG---~~~~~~~~~~~l~~~ 152 (299)
T PRK12490 76 VIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVDCGTSGGVWGLRNGYCLMVGG---DKEIYDRLEPVFKAL 152 (299)
T ss_pred HHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEeCCCCCCHHHHhcCCeEEecC---CHHHHHHHHHHHHHh
Confidence 99999888889999998855433 233444432 3334432 223444555676555544 788999999999999
Q ss_pred CC----eEEcCccchhhHHHhhcchHHHHHHHHHHHHHH---HHHcC--CCHHHHHHHHHH
Q 024016 162 GK----IWRADEKLFDAITGLSGSGPAYIFLAIEALADG---GVAAG--LPRELALGLASQ 213 (274)
Q Consensus 162 g~----~~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~---~~~~G--l~~~~~~~~~~~ 213 (274)
|. .+++++..-...+.++ .+.+.+..+.++.|+ +++.| +|++.+.+++..
T Consensus 153 ~~~~~~~~~~G~~g~a~~~Kl~--~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~~~~ 211 (299)
T PRK12490 153 APEGPGYVHAGPVGSGHFLKMV--HNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARLWRN 211 (299)
T ss_pred cCcCCcEEEECCcCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHcC
Confidence 95 4788875444444443 345555666677776 45788 999999999885
No 33
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.90 E-value=2.5e-23 Score=164.30 Aligned_cols=151 Identities=25% Similarity=0.418 Sum_probs=114.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCc-ccHHHHH
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP-QVVKDVA 88 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~-~~~~~v~ 88 (274)
|+||||||+|+||+.|+++|.++|| +|++| ||++++.+++.+.|++.++++.|+++++|+||+|+|+ +++++++
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~----~v~~~-d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~ 75 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGY----EVTVY-DRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVL 75 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTT----EEEEE-ESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHH
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCC----eEEee-ccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhh
Confidence 4699999999999999999999999 99999 9999999999999999999999999999999999986 6799999
Q ss_pred HH--hccccCCCCEEEEecCCCCHH---HHHHhhC--CCceEEE-cCCcHHhhcCCc-eEEecCCCCCHHHHHHHHHHhh
Q 024016 89 MQ--IRPLLSRKKLLVSVAAGVKLK---DLQEWTG--HSRFIRV-MPNTPSAVGEAA-TVMSLGGTATEEDGELIGKLFG 159 (274)
Q Consensus 89 ~~--i~~~l~~~~~vis~~~g~~~~---~l~~~~~--~~~~~~~-~p~~~~~~~~g~-~~i~~~~~~~~~~~~~v~~ll~ 159 (274)
.+ +.+.+++|+++|++ ++++++ .+++.+. +..++.. +...|.....|. +++..| +++.+++++++|+
T Consensus 76 ~~~~i~~~l~~g~iiid~-sT~~p~~~~~~~~~~~~~g~~~vdapV~Gg~~~a~~g~l~~~~gG---~~~~~~~~~~~l~ 151 (163)
T PF03446_consen 76 FGENILAGLRPGKIIIDM-STISPETSRELAERLAAKGVRYVDAPVSGGPPGAEEGTLTIMVGG---DEEAFERVRPLLE 151 (163)
T ss_dssp HCTTHGGGS-TTEEEEE--SS--HHHHHHHHHHHHHTTEEEEEEEEESHHHHHHHTTEEEEEES----HHHHHHHHHHHH
T ss_pred hhhHHhhccccceEEEec-CCcchhhhhhhhhhhhhccceeeeeeeecccccccccceEEEccC---CHHHHHHHHHHHH
Confidence 88 99999999999987 445554 3444442 3344432 234455556666 455554 6899999999999
Q ss_pred hcCCe-E-EcCc
Q 024016 160 SVGKI-W-RADE 169 (274)
Q Consensus 160 ~~g~~-~-~~~e 169 (274)
.+|.. + +++|
T Consensus 152 ~~~~~v~~~~G~ 163 (163)
T PF03446_consen 152 AMGKNVYHYVGP 163 (163)
T ss_dssp HHEEEEEEE-ES
T ss_pred HHhCCceeeeCc
Confidence 99975 5 3453
No 34
>PF14748 P5CR_dimer: Pyrroline-5-carboxylate reductase dimerisation; PDB: 2RCY_D 3TRI_A 2IZZ_B 2GR9_B 2GRA_B 2GER_C 1YQG_A 2AG8_A 3GT0_A 2AMF_E ....
Probab=99.90 E-value=9.2e-23 Score=148.72 Aligned_cols=107 Identities=58% Similarity=0.907 Sum_probs=100.0
Q ss_pred cCccchhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHHHH
Q 024016 167 ADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAG 246 (274)
Q Consensus 167 ~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~ 246 (274)
++|+++|.+++++||+|+|++.+++++.+++++.|++++++++++.+++.|+..++.+++.+|..+++.++||||+|+++
T Consensus 1 V~E~~~d~~talsGsgpA~~~~~~eal~~a~v~~Gl~~~~A~~lv~~t~~G~a~ll~~~~~~~~~l~~~v~tPgG~T~~g 80 (107)
T PF14748_consen 1 VDEDQFDAATALSGSGPAYFFLFIEALADAAVAQGLPREEARKLVAQTFIGAAKLLEESGRSPAELRDEVTTPGGTTIAG 80 (107)
T ss_dssp -SGGGHHHHHHHCTTHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHCSS-HHHHHHHHS-TTSHHHHH
T ss_pred CCHHHHhHHHHHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHccCCCHHHHhhhccCCCCcHHHH
Confidence 47899999999999999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhhc
Q 024016 247 IHELEKSGFRGILMNAVVAAAKRSREL 273 (274)
Q Consensus 247 l~~l~~~~~~~~~~~a~~~~~~r~~~~ 273 (274)
|+.|++.+++..+.++++++++|++||
T Consensus 81 l~~L~~~~~~~~~~~a~~aa~~R~~el 107 (107)
T PF14748_consen 81 LEVLEKGGLRAAIMEALEAAVERAKEL 107 (107)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999987
No 35
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.90 E-value=3e-21 Score=166.99 Aligned_cols=249 Identities=18% Similarity=0.220 Sum_probs=169.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCc-ccHHHHH
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP-QVVKDVA 88 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~-~~~~~v~ 88 (274)
+|||||||+|.||.+++.+|.+.|+ +|++| ||++++.+.+.+.|+...+++.++++++|+||+|+|+ ..++.++
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~~g~----~v~~~-d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~ 76 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLKAGY----SLVVY-DRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVA 76 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHHCCC----eEEEE-cCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHH
Confidence 3689999999999999999999999 99999 9999999888888888777888888999999999985 4567776
Q ss_pred ---HHhccccCCCCEEEEecCCCCHH---HHHHhhC--CCceEEEcC--CcHHhhcCCc-eEEecCCCCCHHHHHHHHHH
Q 024016 89 ---MQIRPLLSRKKLLVSVAAGVKLK---DLQEWTG--HSRFIRVMP--NTPSAVGEAA-TVMSLGGTATEEDGELIGKL 157 (274)
Q Consensus 89 ---~~i~~~l~~~~~vis~~~g~~~~---~l~~~~~--~~~~~~~~p--~~~~~~~~g~-~~i~~~~~~~~~~~~~v~~l 157 (274)
.++.+.++++++++++++ +++. .+.+.+. +..++.. | ..+.....|. ++++.+ +++.++.++++
T Consensus 77 ~~~~~~~~~~~~g~iiid~st-~~~~~~~~l~~~~~~~g~~~~d~-pv~g~~~~a~~g~l~i~~gg---~~~~~~~~~~~ 151 (296)
T PRK11559 77 LGENGIIEGAKPGTVVIDMSS-IAPLASREIAAALKAKGIEMLDA-PVSGGEPKAIDGTLSVMVGG---DKAIFDKYYDL 151 (296)
T ss_pred cCcchHhhcCCCCcEEEECCC-CCHHHHHHHHHHHHHcCCcEEEc-CCCCCHHHHhhCcEEEEECC---CHHHHHHHHHH
Confidence 446777889999997654 4433 4555443 2333332 2 1222223344 444433 68889999999
Q ss_pred hhhcCC-eEEcCccchhhHHHhhcchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Q 024016 158 FGSVGK-IWRADEKLFDAITGLSGSGPAYIFLAIEALADG---GVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLK 233 (274)
Q Consensus 158 l~~~g~-~~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~---~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (274)
|+.+|. .+++++..-...+.++ .+.+.+..+..+.|+ +.+.|++.++..+.+..+..++..+ .. ..+ .+.
T Consensus 152 l~~~~~~~~~~g~~g~a~~~Kl~--~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~l~~~~~~s~~~-~~--~~~-~~~ 225 (296)
T PRK11559 152 MKAMAGSVVHTGDIGAGNVTKLA--NQVIVALNIAAMSEALVLATKAGVNPDLVYQAIRGGLAGSTVL-DA--KAP-MVM 225 (296)
T ss_pred HHHhcCCeEEeCCcCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccCHHH-Hh--hch-Hhh
Confidence 999996 4777754322333332 233444333344444 5689999999988887665544332 21 223 344
Q ss_pred HhcCCCCchHHHH-------HHHHHhCCHHHHHHHHHHHHHHHHhhcC
Q 024016 234 DDVASPGGTTIAG-------IHELEKSGFRGILMNAVVAAAKRSRELS 274 (274)
Q Consensus 234 ~~~~~~~g~t~~~-------l~~l~~~~~~~~~~~a~~~~~~r~~~~~ 274 (274)
+..+.|+++.... ++..++.++...+.+++.+.|+.+.+.|
T Consensus 226 ~~d~~~~f~~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g 273 (296)
T PRK11559 226 DRNFKPGFRIDLHIKDLANALDTSHGVGAPLPLTAAVMEMMQALKADG 273 (296)
T ss_pred cCCCCCCcchHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcC
Confidence 4556787765443 3345666888888888888888887653
No 36
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=99.89 E-value=1.9e-20 Score=161.75 Aligned_cols=194 Identities=14% Similarity=0.104 Sum_probs=142.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhc---cCCCEEEEeeCcccHHHH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVV---EYSDVVVFSVKPQVVKDV 87 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~---~~aDiIil~v~~~~~~~v 87 (274)
|||||||+|+||.+|+++|.++|| +|.+| ||++++.+.+.+.|.....++.++. +.+|+||+|+|++.++++
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~----~V~~~-dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~~~~~v 75 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGH----DCVGY-DHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHGIVDAV 75 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCchHHHHH
Confidence 589999999999999999999999 99999 9999999999887776656665543 468999999999999999
Q ss_pred HHHhccccCCCCEEEEecCCCCHH--HHHHhhC--CCceEEEcC-CcHHhhcCCceEEecCCCCCHHHHHHHHHHhhhcC
Q 024016 88 AMQIRPLLSRKKLLVSVAAGVKLK--DLQEWTG--HSRFIRVMP-NTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVG 162 (274)
Q Consensus 88 ~~~i~~~l~~~~~vis~~~g~~~~--~l~~~~~--~~~~~~~~p-~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~g 162 (274)
++++.+.++++++||+++++.+.+ .+.+.+. +.+++.... ..+.....|.+.+..| +++.++.++++|+.++
T Consensus 76 ~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G~~~~~gG---~~~~~~~~~~~l~~~~ 152 (298)
T TIGR00872 76 LEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERGYCFMIGG---DGEAFARAEPLFADVA 152 (298)
T ss_pred HHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCeeeeCC---CHHHHHHHHHHHHHhc
Confidence 999999999999999987765332 3333332 344554322 2344445676555544 7899999999999998
Q ss_pred C----eEEcCccchhhHHHhhcchHHHHHHHHHHHHHH---HHHc--CCCHHHHHHHHHHH
Q 024016 163 K----IWRADEKLFDAITGLSGSGPAYIFLAIEALADG---GVAA--GLPRELALGLASQT 214 (274)
Q Consensus 163 ~----~~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~---~~~~--Gl~~~~~~~~~~~~ 214 (274)
. .+++++..-.....+. .+.+.+..+.+++|+ +++. |++.++..++...+
T Consensus 153 ~~~~~~~~~G~~G~~~~~K~~--~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i~~~g 211 (298)
T TIGR00872 153 PEEQGYLYCGPCGSGHFVKMV--HNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARVWRRG 211 (298)
T ss_pred CcCCCEEEECCccHhHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHcCC
Confidence 5 4777775433343333 244555556666665 3455 56999988887664
No 37
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.89 E-value=5.2e-21 Score=165.63 Aligned_cols=194 Identities=17% Similarity=0.180 Sum_probs=145.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccC---CCEEEEeeCcc-cHHH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEY---SDVVVFSVKPQ-VVKD 86 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~---aDiIil~v~~~-~~~~ 86 (274)
|||||||+|+||.+|+++|.++|+ +|++| ||++++.+.+.+.|+..++++.++++. +|+||+|+|++ .+++
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~----~v~v~-dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~ 75 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGH----EVVGY-DRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDA 75 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCC----eEEEE-ECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHH
Confidence 589999999999999999999999 99999 999999999988899888888888775 69999999977 7899
Q ss_pred HHHHhccccCCCCEEEEecCCCCH--HHHHHhhC--CCceEEE-cCCcHHhhcCCceEEecCCCCCHHHHHHHHHHhhhc
Q 024016 87 VAMQIRPLLSRKKLLVSVAAGVKL--KDLQEWTG--HSRFIRV-MPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSV 161 (274)
Q Consensus 87 v~~~i~~~l~~~~~vis~~~g~~~--~~l~~~~~--~~~~~~~-~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~ 161 (274)
++.++.+.+++++++|+++++.+. ..+.+.+. +..++.. +...+.....|.+++..| +++.+++++++|+.+
T Consensus 76 v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~dapvsG~~~~a~~g~~~~~gG---~~~~~~~~~~~l~~~ 152 (301)
T PRK09599 76 TIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVDVGTSGGVWGLERGYCLMIGG---DKEAVERLEPIFKAL 152 (301)
T ss_pred HHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEeCCCCcCHHHHhcCCeEEecC---CHHHHHHHHHHHHHH
Confidence 998888888899999988655432 23433332 3444442 123344455676555544 789999999999999
Q ss_pred CC----e-EEcCccchhhHHHhhcchHHHHHHHHHHHHHH---HHH--cCCCHHHHHHHHHHH
Q 024016 162 GK----I-WRADEKLFDAITGLSGSGPAYIFLAIEALADG---GVA--AGLPRELALGLASQT 214 (274)
Q Consensus 162 g~----~-~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~---~~~--~Gl~~~~~~~~~~~~ 214 (274)
+. . +++++..-...+.++ .+.+.+..+.++.|+ +++ .|+|.+...+++..+
T Consensus 153 ~~~~~~~~~~~G~~G~g~~~Kl~--~n~l~~~~~~~~aEa~~l~~~~~~gld~~~~~~~~~~~ 213 (301)
T PRK09599 153 APRAEDGYLHAGPVGAGHFVKMV--HNGIEYGMMQAYAEGFELLEASRFDLDLAAVAEVWRRG 213 (301)
T ss_pred cccccCCeEeECCCcHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhCC
Confidence 97 4 788875433333332 344555555666665 456 999999999988865
No 38
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=99.88 E-value=3.8e-20 Score=167.71 Aligned_cols=192 Identities=13% Similarity=0.192 Sum_probs=143.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc----C--ceeccCchhhcc---CCCEEEEeeC-
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI----G--VKVLSDNNAVVE---YSDVVVFSVK- 80 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~----g--~~~~~~~~~~~~---~aDiIil~v~- 80 (274)
.+|||||+|+||++||++|.++|| +|++| ||++++.+.+.+. | +..+.++.++++ ++|+||+|++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~----~V~v~-dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~ 76 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGF----KISVY-NRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKA 76 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCC----eEEEE-eCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCC
Confidence 489999999999999999999999 99999 9999999888763 5 345678888876 5899999986
Q ss_pred cccHHHHHHHhccccCCCCEEEEecCCCCHHHH--HHhhC--CCceEEE-cCCcHHhhcCCceEEecCCCCCHHHHHHHH
Q 024016 81 PQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDL--QEWTG--HSRFIRV-MPNTPSAVGEAATVMSLGGTATEEDGELIG 155 (274)
Q Consensus 81 ~~~~~~v~~~i~~~l~~~~~vis~~~g~~~~~l--~~~~~--~~~~~~~-~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~ 155 (274)
++.++++++++.+.+.+|++||+++++...+.. .+.+. +..++.+ +...+.....|.++++.| +++++++++
T Consensus 77 ~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~gA~~G~~lm~GG---~~~a~~~~~ 153 (470)
T PTZ00142 77 GEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEEGARYGPSLMPGG---NKEAYDHVK 153 (470)
T ss_pred hHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHHHHhcCCEEEEeC---CHHHHHHHH
Confidence 557899999999999999999998777654332 22222 3444432 223455556777655554 789999999
Q ss_pred HHhhhcC-C------eEEcCccchhhHHHhhcchHHHHHHHHHHHHHH---HH-HcCCCHHHHHHHHH
Q 024016 156 KLFGSVG-K------IWRADEKLFDAITGLSGSGPAYIFLAIEALADG---GV-AAGLPRELALGLAS 212 (274)
Q Consensus 156 ~ll~~~g-~------~~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~---~~-~~Gl~~~~~~~~~~ 212 (274)
++|+.++ + +.++++..-.....++. +.+.+..++++.|+ ++ +.|++.++..+++.
T Consensus 154 piL~~ia~~~~~~~~~~~~G~~GaGh~vKmvh--N~ie~~~m~~iaEa~~l~~~~~gl~~~~l~~v~~ 219 (470)
T PTZ00142 154 DILEKCSAKVGDSPCVTYVGPGSSGHYVKMVH--NGIEYGDMQLISESYKLMKHILGMSNEELSEVFN 219 (470)
T ss_pred HHHHHHhhhcCCCCeEEEECCCCHHHHHHHHh--HHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHH
Confidence 9999998 4 36788765444555543 34445566677766 33 59999999888874
No 39
>PLN02712 arogenate dehydrogenase
Probab=99.88 E-value=5.8e-21 Score=179.90 Aligned_cols=243 Identities=13% Similarity=0.098 Sum_probs=170.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhcc-CCCEEEEeeCcccHHHH
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVE-YSDVVVFSVKPQVVKDV 87 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~-~aDiIil~v~~~~~~~v 87 (274)
+.+||||||+|+||.+++++|.+.|+ +|++| +|+... +...+.|+....+..+++. .+|+||+|||+..+.++
T Consensus 368 ~~~kIgIIGlG~mG~slA~~L~~~G~----~V~~~-dr~~~~-~~a~~~Gv~~~~~~~el~~~~aDvVILavP~~~~~~v 441 (667)
T PLN02712 368 SKLKIAIVGFGNFGQFLAKTMVKQGH----TVLAY-SRSDYS-DEAQKLGVSYFSDADDLCEEHPEVILLCTSILSTEKV 441 (667)
T ss_pred CCCEEEEEecCHHHHHHHHHHHHCcC----EEEEE-ECChHH-HHHHHcCCeEeCCHHHHHhcCCCEEEECCChHHHHHH
Confidence 56899999999999999999999998 99999 998653 4455578776667777665 58999999999999999
Q ss_pred HHHhcc-ccCCCCEEEEecCC--CCHHHHHHhhC-CCceEEEcCCcHHhhc-CC---ce-----EEecCCCCCHHHHHHH
Q 024016 88 AMQIRP-LLSRKKLLVSVAAG--VKLKDLQEWTG-HSRFIRVMPNTPSAVG-EA---AT-----VMSLGGTATEEDGELI 154 (274)
Q Consensus 88 ~~~i~~-~l~~~~~vis~~~g--~~~~~l~~~~~-~~~~~~~~p~~~~~~~-~g---~~-----~i~~~~~~~~~~~~~v 154 (274)
+.++.. .++++++|++++++ ...+.+.+.++ +.++++.||+.....+ .| .. .++.++....+.++.+
T Consensus 442 i~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~~~~~v~~HPm~G~e~~~~G~~~~~~lf~~~~v~~~~~~~~~~~~l 521 (667)
T PLN02712 442 LKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQDFDILCTHPMFGPESGKNGWNNLAFVFDKVRIGSDDRRVSRCDSF 521 (667)
T ss_pred HHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccCCCceEeeCCCCCccccccchhhhhhhccCcEeCCCcchHHHHHHH
Confidence 998865 57889999988654 34566666666 4679999998765443 23 11 1122222234556677
Q ss_pred HHHhhhcCCe-EEcCccchhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh-cCCChHHH
Q 024016 155 GKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTK-SGKHPGQL 232 (274)
Q Consensus 155 ~~ll~~~g~~-~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 232 (274)
.++++.+|.. +.++.++||..+|.+++.|+.++ ....+.|++. ..+...+++....++.+ ...+|..|
T Consensus 522 ~~l~~~lGa~vv~ms~eeHD~~~A~vShLpHlla-------~~L~~~~~~~---~~~~~~gfr~l~~Li~Ria~~~p~l~ 591 (667)
T PLN02712 522 LDIFAREGCRMVEMSCAEHDWHAAGSQFITHTMG-------RLLEKLGLES---TPINTKGYETLLNLVENTAGDSFDLY 591 (667)
T ss_pred HHHHHHcCCEEEEeCHHHHHHHHHHHHHHHHHHH-------HHHHHCCCcc---cccccHHHHHHHHHHHhhcCCCHHHH
Confidence 7999999965 88999999999998887777543 2334555541 23444555555422221 23589999
Q ss_pred HHhcCCCCchHHHHHHHHHhC--CHHHHHHHHHHHHHH
Q 024016 233 KDDVASPGGTTIAGIHELEKS--GFRGILMNAVVAAAK 268 (274)
Q Consensus 233 ~~~~~~~~g~t~~~l~~l~~~--~~~~~~~~a~~~~~~ 268 (274)
.+.+..+... .+.++.+++. .++..+.+-++.+++
T Consensus 592 ~dI~~~N~~a-~~~l~~f~~~l~~~~~~l~~~~~~~~~ 628 (667)
T PLN02712 592 YGLFMYNVNA-MEQLERLDLAFESLKKQLFGRLHGVLR 628 (667)
T ss_pred HHHHHHChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999887666 6677777653 566666555555543
No 40
>PLN02858 fructose-bisphosphate aldolase
Probab=99.87 E-value=2e-20 Score=187.73 Aligned_cols=250 Identities=16% Similarity=0.133 Sum_probs=177.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccHHHH
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVVKDV 87 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~~~v 87 (274)
..++|||||+|+||.+|+++|+++|| +|++| ||++++.+.+.+.|+....++.+++++||+||+||| +++++++
T Consensus 323 ~~~~IGfIGlG~MG~~mA~~L~~~G~----~V~v~-dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~V 397 (1378)
T PLN02858 323 PVKRIGFIGLGAMGFGMASHLLKSNF----SVCGY-DVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENV 397 (1378)
T ss_pred CCCeEEEECchHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHH
Confidence 34789999999999999999999999 99999 999999999988888777889999999999999998 7778888
Q ss_pred HH---HhccccCCCCEEEEecCCCCHH---HHHHhhC----CCceEEE-cCCcHHhhcCCc-eEEecCCCCCHHHHHHHH
Q 024016 88 AM---QIRPLLSRKKLLVSVAAGVKLK---DLQEWTG----HSRFIRV-MPNTPSAVGEAA-TVMSLGGTATEEDGELIG 155 (274)
Q Consensus 88 ~~---~i~~~l~~~~~vis~~~g~~~~---~l~~~~~----~~~~~~~-~p~~~~~~~~g~-~~i~~~~~~~~~~~~~v~ 155 (274)
+. ++.+.+++|+++|++ ++++++ .+.+.+. +..++.. +...|.....|. ++++.| +++.+++++
T Consensus 398 l~g~~g~~~~l~~g~ivVd~-STvsP~~~~~la~~l~~~g~g~~~lDAPVsGg~~~A~~G~L~imvgG---~~~~~~~~~ 473 (1378)
T PLN02858 398 LFGDLGAVSALPAGASIVLS-STVSPGFVIQLERRLENEGRDIKLVDAPVSGGVKRAAMGTLTIMASG---TDEALKSAG 473 (1378)
T ss_pred HhchhhHHhcCCCCCEEEEC-CCCCHHHHHHHHHHHHhhCCCcEEEEccCCCChhhhhcCCceEEEEC---CHHHHHHHH
Confidence 73 466677899999977 445544 3434332 2233332 223455555665 445544 688999999
Q ss_pred HHhhhcCCe-EEc-CccchhhHHHhhcchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChH
Q 024016 156 KLFGSVGKI-WRA-DEKLFDAITGLSGSGPAYIFLAIEALADG---GVAAGLPRELALGLASQTVLGAASMVTKSGKHPG 230 (274)
Q Consensus 156 ~ll~~~g~~-~~~-~e~~~~~~~a~~~~~~~~~~~~~~~l~e~---~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (274)
++|+.+|.. +++ ++..-...+.++ .+.+.+..+.++.|+ +++.|++++.+++++..+...+..+ .. ..+
T Consensus 474 plL~~lg~~i~~~~g~~G~a~~~KL~--nN~l~~~~~aa~aEal~la~k~Gld~~~l~evl~~s~g~s~~~-~~--~~~- 547 (1378)
T PLN02858 474 SVLSALSEKLYVIKGGCGAGSGVKMV--NQLLAGVHIASAAEAMAFGARLGLNTRKLFDIISNAGGTSWMF-EN--RVP- 547 (1378)
T ss_pred HHHHHHhCcEEEeCCCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcccChhh-hh--ccc-
Confidence 999999965 553 443333344433 233444445556665 4689999999999998887655433 21 233
Q ss_pred HHHHhcCCCCchHHHHHHH-------HHhCCHHHHHHHHHHHHHHHHhhc
Q 024016 231 QLKDDVASPGGTTIAGIHE-------LEKSGFRGILMNAVVAAAKRSREL 273 (274)
Q Consensus 231 ~~~~~~~~~~g~t~~~l~~-------l~~~~~~~~~~~a~~~~~~r~~~~ 273 (274)
.+.+..++|++......+. .++.++...+.++..+.|+++.+.
T Consensus 548 ~~l~~d~~~~f~l~l~~KDl~l~~~~a~~~g~~~pl~~~~~~~~~~a~~~ 597 (1378)
T PLN02858 548 HMLDNDYTPYSALDIFVKDLGIVSREGSSRKIPLHLSTVAHQLFLAGSAS 597 (1378)
T ss_pred hhhcCCCCCCchhHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhc
Confidence 3445556888777665444 455677777888888888887654
No 41
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=99.87 E-value=1.1e-19 Score=167.17 Aligned_cols=192 Identities=17% Similarity=0.135 Sum_probs=143.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-------------------cC-ceeccCchhhc
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-------------------IG-VKVLSDNNAVV 69 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-------------------~g-~~~~~~~~~~~ 69 (274)
.+||+|||+|.||++||.+|+++|+ +|++| |+++++.+.+.+ .| ++.++++.+++
T Consensus 4 i~kIavIG~G~MG~~iA~~la~~G~----~V~v~-D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~ 78 (495)
T PRK07531 4 IMKAACIGGGVIGGGWAARFLLAGI----DVAVF-DPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAV 78 (495)
T ss_pred cCEEEEECcCHHHHHHHHHHHhCCC----eEEEE-eCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHh
Confidence 4689999999999999999999999 99999 999988765421 13 56677888889
Q ss_pred cCCCEEEEeeCccc-H-HHHHHHhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHhhcCCceEEecCCCC
Q 024016 70 EYSDVVVFSVKPQV-V-KDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSLGGTA 146 (274)
Q Consensus 70 ~~aDiIil~v~~~~-~-~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~i~~~~~~ 146 (274)
++||+||.|+|++. + +.++.++.+..+++.+|.|.+++++++.+++.+. ..+++..||+.|...+. ...+++++..
T Consensus 79 ~~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~~~~~~~r~~~~hP~nP~~~~~-Lvevv~g~~t 157 (495)
T PRK07531 79 AGADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQEGMTHPERLFVAHPYNPVYLLP-LVELVGGGKT 157 (495)
T ss_pred cCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcceEEEEecCCCcccCc-eEEEcCCCCC
Confidence 99999999998774 4 4566778777788888888889999988888775 35788899988876543 3456677778
Q ss_pred CHHHHHHHHHHhhhcCCe-EEcCccchhhHHHhhcchHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHH
Q 024016 147 TEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFL-AIEALADGGVAAGLPRELALGLASQT 214 (274)
Q Consensus 147 ~~~~~~~v~~ll~~~g~~-~~~~e~~~~~~~a~~~~~~~~~~~-~~~~l~e~~~~~Gl~~~~~~~~~~~~ 214 (274)
+++.++.++++++.+|+. +++.. ..+.+++ +..... +.|++. .+.+.|+++++..+++..+
T Consensus 158 ~~e~~~~~~~~~~~lG~~~v~~~k-~~~gfi~-----nrl~~a~~~EA~~-L~~~g~~s~~~id~~~~~g 220 (495)
T PRK07531 158 SPETIRRAKEILREIGMKPVHIAK-EIDAFVG-----DRLLEALWREALW-LVKDGIATTEEIDDVIRYS 220 (495)
T ss_pred CHHHHHHHHHHHHHcCCEEEeecC-CCcchhH-----HHHHHHHHHHHHH-HHHcCCCCHHHHHHHHhhc
Confidence 899999999999999976 66643 2333222 111111 123321 1346778999888887755
No 42
>PRK08818 prephenate dehydrogenase; Provisional
Probab=99.87 E-value=1.5e-20 Score=165.02 Aligned_cols=238 Identities=12% Similarity=0.106 Sum_probs=164.6
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhC-CCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccHHH
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKS-GVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKD 86 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~-g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~~ 86 (274)
.++||+|||+ |.||+++++.|.+. ++ +|++| |++.+ ...++.+.+++||+||+|||...+.+
T Consensus 3 ~~~~I~IIGl~GliGgslA~alk~~~~~----~V~g~-D~~d~-----------~~~~~~~~v~~aDlVilavPv~~~~~ 66 (370)
T PRK08818 3 AQPVVGIVGSAGAYGRWLARFLRTRMQL----EVIGH-DPADP-----------GSLDPATLLQRADVLIFSAPIRHTAA 66 (370)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCCC----EEEEE-cCCcc-----------ccCCHHHHhcCCCEEEEeCCHHHHHH
Confidence 4679999999 99999999999864 66 89999 88521 12355677889999999999999999
Q ss_pred HHHHhccc---cCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHh-h--cCCce-EEecCCCCCHHHHHHHHHHh
Q 024016 87 VAMQIRPL---LSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSA-V--GEAAT-VMSLGGTATEEDGELIGKLF 158 (274)
Q Consensus 87 v~~~i~~~---l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~-~--~~g~~-~i~~~~~~~~~~~~~v~~ll 158 (274)
+++++.+. ++++++|.++ ++++...++...+ ..+++..||..-.+ . .+|.. ++++. ...+..+++++++
T Consensus 67 ~l~~l~~~~~~l~~~~iVtDV-gSvK~~i~~~~~~~~~~fVG~HPMaG~E~s~lf~g~~~iltp~--~~~~~~~~v~~l~ 143 (370)
T PRK08818 67 LIEEYVALAGGRAAGQLWLDV-TSIKQAPVAAMLASQAEVVGLHPMTAPPKSPTLKGRVMVVCEA--RLQHWSPWVQSLC 143 (370)
T ss_pred HHHHHhhhhcCCCCCeEEEEC-CCCcHHHHHHHHhcCCCEEeeCCCCCCCCCcccCCCeEEEeCC--CchhHHHHHHHHH
Confidence 99998875 6888776665 5566555544444 35688888865322 1 13443 44543 2445578899999
Q ss_pred hhcCCe-EEcCccchhhHHHhhcchHHHHHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHH-HH---HHHHHhcCCChH
Q 024016 159 GSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLP---RELALGLASQTVL-GA---ASMVTKSGKHPG 230 (274)
Q Consensus 159 ~~~g~~-~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~---~~~~~~~~~~~~~-~~---~~~~~~~~~~~~ 230 (274)
+.+|.. +++++++||.+++.+++.+++.+..+..+.. ..... ......+..++|+ ++ .|++. .+|.
T Consensus 144 ~~~Ga~v~~~~aeeHD~~~A~vS~LsHl~~l~~~~~~~---~~~~~~~~~~~~~~f~~~gFr~d~t~iTRIAs---s~P~ 217 (370)
T PRK08818 144 SALQAECVYATPEHHDRVMALVQAMVHATHLAQAGVLR---DYAPLLGELRALMPYRSASFELDTAVIARILS---LNPS 217 (370)
T ss_pred HHcCCEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcccchhhhhhhccccchhhHHHhhhcchhhc---CCHH
Confidence 999965 8899999999999998888776654444332 11110 1111245566666 33 46653 6899
Q ss_pred HHHHhcCCCCchHHHHHHHHHhC--CHHHHHHH----HHHHH---HHHHhh
Q 024016 231 QLKDDVASPGGTTIAGIHELEKS--GFRGILMN----AVVAA---AKRSRE 272 (274)
Q Consensus 231 ~~~~~~~~~~g~t~~~l~~l~~~--~~~~~~~~----a~~~~---~~r~~~ 272 (274)
+|.+.+.++. ...+.++.+.+. .+...+.+ ++.+. ++++++
T Consensus 218 mW~dI~~~N~-~i~~~l~~~~~~L~~l~~~i~~~D~~~~~~~~~~f~~a~~ 267 (370)
T PRK08818 218 IYEDIQFGNP-YVGEMLDRLLAQLQELRALVAQGDDAARARFRAQFLHANA 267 (370)
T ss_pred HHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 9999999988 777777777653 44444432 34445 566655
No 43
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.86 E-value=5.4e-20 Score=160.19 Aligned_cols=193 Identities=19% Similarity=0.181 Sum_probs=142.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-----cC--------------ceeccCchhhcc
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----IG--------------VKVLSDNNAVVE 70 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-----~g--------------~~~~~~~~~~~~ 70 (274)
.+||+|||+|.||.+|+..|.++|+ +|++| ++++++.+.+.+ .+ ++..++..++++
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~g~----~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 78 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARKGL----QVVLI-DVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVS 78 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhCCC----eEEEE-ECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhc
Confidence 4689999999999999999999999 99999 999988776653 12 234556667788
Q ss_pred CCCEEEEeeCccc--HHHHHHHhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHhhcCCceEEecCCCCC
Q 024016 71 YSDVVVFSVKPQV--VKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSLGGTAT 147 (274)
Q Consensus 71 ~aDiIil~v~~~~--~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~i~~~~~~~ 147 (274)
+||+||+|+|++. ..+++.++.+.++++++|+|.+++++.+.+++.++ ..++++.||+.|..... ...+++++..+
T Consensus 79 ~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~l~~~~~~~~~~ig~h~~~p~~~~~-l~~i~~g~~t~ 157 (311)
T PRK06130 79 GADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQAVTRPERFVGTHFFTPADVIP-LVEVVRGDKTS 157 (311)
T ss_pred cCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEccCCCCccCc-eEEEeCCCCCC
Confidence 9999999998764 67888888877778878888889999999988775 35789999998876655 44566777788
Q ss_pred HHHHHHHHHHhhhcCCe-EEcCccchhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 024016 148 EEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQT 214 (274)
Q Consensus 148 ~~~~~~v~~ll~~~g~~-~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~ 214 (274)
++.++.++++|+.+|.. ++++.+....+ . ...+...+.+++. .+.+.|+++++..+++..+
T Consensus 158 ~~~~~~v~~l~~~~G~~~v~~~~d~~G~i---~--nr~~~~~~~Ea~~-l~~~g~~~~~~id~~~~~~ 219 (311)
T PRK06130 158 PQTVATTMALLRSIGKRPVLVKKDIPGFI---A--NRIQHALAREAIS-LLEKGVASAEDIDEVVKWS 219 (311)
T ss_pred HHHHHHHHHHHHHcCCEEEEEcCCCCCcH---H--HHHHHHHHHHHHH-HHHcCCCCHHHHHHHHHhc
Confidence 99999999999999975 66654321110 0 0111222222321 2346678999888877543
No 44
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=99.86 E-value=1.8e-19 Score=163.40 Aligned_cols=191 Identities=15% Similarity=0.161 Sum_probs=141.3
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc-----CceeccCchhhc---cCCCEEEEeeCc-c
Q 024016 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI-----GVKVLSDNNAVV---EYSDVVVFSVKP-Q 82 (274)
Q Consensus 12 ~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~-----g~~~~~~~~~~~---~~aDiIil~v~~-~ 82 (274)
+|||||+|+||.+|+++|.++|| +|++| ||++++.+.+.+. ++..+.++.+++ +++|+||+|+|+ +
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~----~V~v~-drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~ 75 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGF----TVSVY-NRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGA 75 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCC----eEEEE-eCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcH
Confidence 48999999999999999999999 99999 9999999998864 255666777765 468999999987 6
Q ss_pred cHHHHHHHhccccCCCCEEEEecCCCCHHH--HHHhhC--CCceEEEc-CCcHHhhcCCceEEecCCCCCHHHHHHHHHH
Q 024016 83 VVKDVAMQIRPLLSRKKLLVSVAAGVKLKD--LQEWTG--HSRFIRVM-PNTPSAVGEAATVMSLGGTATEEDGELIGKL 157 (274)
Q Consensus 83 ~~~~v~~~i~~~l~~~~~vis~~~g~~~~~--l~~~~~--~~~~~~~~-p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~l 157 (274)
.+.+++.++.+.+++|++||+++++...+. ..+.+. +..++.+. ...+.....|.+++..| +++++++++++
T Consensus 76 ~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~gA~~G~~im~GG---~~~a~~~~~p~ 152 (467)
T TIGR00873 76 PVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEEGARKGPSIMPGG---SAEAWPLVAPI 152 (467)
T ss_pred HHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHHHHhcCCcCCCCC---CHHHHHHHHHH
Confidence 789999999999999999999876554332 222232 34444432 23444556677555443 78999999999
Q ss_pred hhhcCCe-------EEcCccchhhHHHhhcchHHHHHHHHHHHHHHH----HHcCCCHHHHHHHHH
Q 024016 158 FGSVGKI-------WRADEKLFDAITGLSGSGPAYIFLAIEALADGG----VAAGLPRELALGLAS 212 (274)
Q Consensus 158 l~~~g~~-------~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~~----~~~Gl~~~~~~~~~~ 212 (274)
|+.++.. .++++..-.....++. +.+.+..+++++|+. .+.|++.++..+++.
T Consensus 153 L~~ia~~~~~~~~~~~~G~~GsG~~vKmvh--N~i~~~~m~~~aEa~~ll~~~~g~~~~~l~~v~~ 216 (467)
T TIGR00873 153 FQKIAAKVDGEPCCTWIGPDGAGHYVKMVH--NGIEYGDMQLICEAYDILKDGLGLSNEEIAEVFT 216 (467)
T ss_pred HHHHhhhcCCCCceEEECCcCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 9999842 5788765555555543 445556677777763 259999999888883
No 45
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.84 E-value=4.7e-19 Score=152.14 Aligned_cols=154 Identities=18% Similarity=0.231 Sum_probs=127.3
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHH-----------HHHHcC-------------ceecc
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD-----------AFESIG-------------VKVLS 63 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~-----------~l~~~g-------------~~~~~ 63 (274)
|+++||+|||+|.||.+++..|.++|+ +|++| |+++++.+ .+.+.| ++..+
T Consensus 1 ~~~~kI~VIG~G~mG~~ia~~la~~g~----~V~~~-d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~ 75 (282)
T PRK05808 1 MGIQKIGVIGAGTMGNGIAQVCAVAGY----DVVMV-DISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTT 75 (282)
T ss_pred CCccEEEEEccCHHHHHHHHHHHHCCC----ceEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeC
Confidence 345689999999999999999999999 99999 99998874 233333 33344
Q ss_pred CchhhccCCCEEEEeeCcccH--HHHHHHhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHhhcCCceEE
Q 024016 64 DNNAVVEYSDVVVFSVKPQVV--KDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVM 140 (274)
Q Consensus 64 ~~~~~~~~aDiIil~v~~~~~--~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~i 140 (274)
+. +.+++||+||+|+|++.. .+++.++.+.++++++++|.+++++++.+++.++ ..++++.||+.|.....+.. +
T Consensus 76 ~~-~~~~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~~~~~~~r~ig~h~~~P~~~~~~ve-v 153 (282)
T PRK05808 76 DL-DDLKDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAAATKRPDKVIGMHFFNPVPVMKLVE-I 153 (282)
T ss_pred CH-HHhccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhhCCCcceEEeeccCCcccCccEE-E
Confidence 54 447899999999986543 6889999998999998889999999999988875 35899999999988877775 6
Q ss_pred ecCCCCCHHHHHHHHHHhhhcCCe-EEcC
Q 024016 141 SLGGTATEEDGELIGKLFGSVGKI-WRAD 168 (274)
Q Consensus 141 ~~~~~~~~~~~~~v~~ll~~~g~~-~~~~ 168 (274)
+.+...+++..+.+.++++.+|+. +++.
T Consensus 154 ~~g~~t~~e~~~~~~~l~~~lGk~pv~~~ 182 (282)
T PRK05808 154 IRGLATSDATHEAVEALAKKIGKTPVEVK 182 (282)
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCeeEEec
Confidence 778888999999999999999986 6654
No 46
>PLN02712 arogenate dehydrogenase
Probab=99.84 E-value=4.3e-19 Score=167.27 Aligned_cols=239 Identities=15% Similarity=0.123 Sum_probs=164.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhc-cCCCEEEEeeCcccHHHH
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVV-EYSDVVVFSVKPQVVKDV 87 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~-~~aDiIil~v~~~~~~~v 87 (274)
+++||||||+|+||.+++++|.+.|+ +|++| +|+..+ +...+.|+....+..+++ .++|+||+|||++.+.++
T Consensus 51 ~~~kIgIIG~G~mG~slA~~L~~~G~----~V~~~-dr~~~~-~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~~~~~~v 124 (667)
T PLN02712 51 TQLKIAIIGFGNYGQFLAKTLISQGH----TVLAH-SRSDHS-LAARSLGVSFFLDPHDLCERHPDVILLCTSIISTENV 124 (667)
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCC----EEEEE-eCCHHH-HHHHHcCCEEeCCHHHHhhcCCCEEEEcCCHHHHHHH
Confidence 34799999999999999999999998 99999 998544 445557887777777755 569999999999999999
Q ss_pred HHHhc-cccCCCCEEEEecCCCCH---HHHHHhhC-CCceEEEcCCcHHh-h---cCCceEEec----C-CCCCHHHHHH
Q 024016 88 AMQIR-PLLSRKKLLVSVAAGVKL---KDLQEWTG-HSRFIRVMPNTPSA-V---GEAATVMSL----G-GTATEEDGEL 153 (274)
Q Consensus 88 ~~~i~-~~l~~~~~vis~~~g~~~---~~l~~~~~-~~~~~~~~p~~~~~-~---~~g~~~i~~----~-~~~~~~~~~~ 153 (274)
+.++. +.++++++|+++. +++. +.+.+.++ +..+++.||....+ . -.+...++. + +....+.+++
T Consensus 125 l~~l~~~~l~~g~iVvDv~-SvK~~~~~~l~~~l~~~~~~v~~HPMaG~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (667)
T PLN02712 125 LKSLPLQRLKRNTLFVDVL-SVKEFAKNLLLDYLPEDFDIICSHPMFGPQSAKHGWDGLRFVYEKVRIGNEELRVSRCKS 203 (667)
T ss_pred HHhhhhhcCCCCeEEEECC-CCcHHHHHHHHHhcCCCCeEEeeCCcCCCccccchhccCcEEEeeccCCCccccHHHHHH
Confidence 99886 6688899888874 4443 34556665 45789999974222 1 122222222 1 1112345677
Q ss_pred HHHHhhhcCCe-EEcCccchhhHHHhhcchHHHHHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHHHHHHHHhcCCCh
Q 024016 154 IGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLP---RELALGLASQTVLGAASMVTKSGKHP 229 (274)
Q Consensus 154 v~~ll~~~g~~-~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (274)
++++|+.+|.. +.++.++||.++|.+++.|++++..+..+.. ....+. .+...+++ .+++. .+|
T Consensus 204 l~~l~~~lGa~v~~ms~eeHD~~~A~vshLpH~la~~L~~~~~--~~~~~~~~~~~~~l~l~-------~Ria~---~~p 271 (667)
T PLN02712 204 FLEVFEREGCKMVEMSCTEHDKYAAESQFITHTVGRVLEMLKL--ESTPINTKGYESLLDLV-------ENTCG---DSF 271 (667)
T ss_pred HHHHHHHcCCEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHhcc--cccccCCccHHHHHHHH-------HHHhc---CCH
Confidence 88999999965 8899999999999999999876654432210 001121 22222222 45553 589
Q ss_pred HHHHHhcCCCCchHHHHHHHHHhC--CHHHHHHHHHHHHH
Q 024016 230 GQLKDDVASPGGTTIAGIHELEKS--GFRGILMNAVVAAA 267 (274)
Q Consensus 230 ~~~~~~~~~~~g~t~~~l~~l~~~--~~~~~~~~a~~~~~ 267 (274)
+.|.+.+..+. ...+.++.+++. .++..+..-++..+
T Consensus 272 ~L~~dI~~~N~-~~~~~l~~~~~~l~~~~~~l~~~~~~~~ 310 (667)
T PLN02712 272 DLYYGLFMYNK-NSLEMLERLDLAFEALRKQLFGRLHGVV 310 (667)
T ss_pred HHHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998887 777778887664 55555544444433
No 47
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=99.84 E-value=8.7e-19 Score=153.52 Aligned_cols=194 Identities=22% Similarity=0.273 Sum_probs=136.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc--------------CceeccCchhhccCCCEEE
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI--------------GVKVLSDNNAVVEYSDVVV 76 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~--------------g~~~~~~~~~~~~~aDiIi 76 (274)
|||+|||+|+||++|+..|.++|+ +|++| +|++++.+.+.+. ++...+++.+.++++|+||
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~----~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi 76 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGH----DVTLW-ARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLIL 76 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC----EEEEE-ECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEE
Confidence 689999999999999999999999 99999 9999988888764 3455567777888999999
Q ss_pred EeeCcccHHHHHHHhccccCCCCEEEEecCCCCH-------HHHHHhhCC--CceEEEcCCcHHhhcCCc--eEEecCCC
Q 024016 77 FSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKL-------KDLQEWTGH--SRFIRVMPNTPSAVGEAA--TVMSLGGT 145 (274)
Q Consensus 77 l~v~~~~~~~v~~~i~~~l~~~~~vis~~~g~~~-------~~l~~~~~~--~~~~~~~p~~~~~~~~g~--~~i~~~~~ 145 (274)
+|||++++++++.++.+.+++++++|++++|+.. +.+++..+. .......|+.+...+.|. ..+..+
T Consensus 77 ~~v~~~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~~~~~~P~~~~~~~~g~~~~~~~~~-- 154 (325)
T PRK00094 77 VAVPSQALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPIAVLSGPSFAKEVARGLPTAVVIAS-- 154 (325)
T ss_pred EeCCHHHHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCceEEEECccHHHHHHcCCCcEEEEEe--
Confidence 9999999999999999888899999999888775 334444442 223445677766554443 222222
Q ss_pred CCHHHHHHHHHHhhhcCCeEEcCccchh---------h-------HHHhhcchHHHHHHHHHHHHHH---HHHcCCCHHH
Q 024016 146 ATEEDGELIGKLFGSVGKIWRADEKLFD---------A-------ITGLSGSGPAYIFLAIEALADG---GVAAGLPREL 206 (274)
Q Consensus 146 ~~~~~~~~v~~ll~~~g~~~~~~e~~~~---------~-------~~a~~~~~~~~~~~~~~~l~e~---~~~~Gl~~~~ 206 (274)
.+.+..+++.++|+..|......++... . ...+.-..+.........+.|. +++.|++++.
T Consensus 155 ~~~~~~~~~~~~l~~~~~~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G~d~~~ 234 (325)
T PRK00094 155 TDEELAERVQELFHSPYFRVYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITRLGVALGANPET 234 (325)
T ss_pred CCHHHHHHHHHHhCCCCEEEEecCCcchhhHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhCCChhh
Confidence 3688899999999998865333222111 1 1111111122334444555554 4689999998
Q ss_pred HHHHH
Q 024016 207 ALGLA 211 (274)
Q Consensus 207 ~~~~~ 211 (274)
+.++.
T Consensus 235 ~~~~~ 239 (325)
T PRK00094 235 FLGLA 239 (325)
T ss_pred hhccc
Confidence 87764
No 48
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=99.84 E-value=1e-19 Score=153.91 Aligned_cols=225 Identities=21% Similarity=0.243 Sum_probs=160.2
Q ss_pred HHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCce--eccCchhhccCCCEEEEeeCcccHHHHHHHhccccCCCCEEE
Q 024016 25 IAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK--VLSDNNAVVEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLV 102 (274)
Q Consensus 25 ~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~--~~~~~~~~~~~aDiIil~v~~~~~~~v~~~i~~~l~~~~~vi 102 (274)
+|+.|.++|+ ..+|+.| |++++..+...+.|+. ..++ .+.++++|+||+|||+..+.+++.++.++++++++|+
T Consensus 1 ~A~aL~~~g~--~~~v~g~-d~~~~~~~~a~~~g~~~~~~~~-~~~~~~~DlvvlavP~~~~~~~l~~~~~~~~~~~iv~ 76 (258)
T PF02153_consen 1 IALALRKAGP--DVEVYGY-DRDPETLEAALELGIIDEASTD-IEAVEDADLVVLAVPVSAIEDVLEEIAPYLKPGAIVT 76 (258)
T ss_dssp HHHHHHHTTT--TSEEEEE--SSHHHHHHHHHTTSSSEEESH-HHHGGCCSEEEE-S-HHHHHHHHHHHHCGS-TTSEEE
T ss_pred ChHHHHhCCC--CeEEEEE-eCCHHHHHHHHHCCCeeeccCC-HhHhcCCCEEEEcCCHHHHHHHHHHhhhhcCCCcEEE
Confidence 5788999983 1289999 9999998888777764 2233 5778999999999999999999999999999998888
Q ss_pred EecCCCCH---HHHHHhhC-CCceEEEcCCcHH----------hhcCC-ceEEecCCCCCHHHHHHHHHHhhhcCCe-EE
Q 024016 103 SVAAGVKL---KDLQEWTG-HSRFIRVMPNTPS----------AVGEA-ATVMSLGGTATEEDGELIGKLFGSVGKI-WR 166 (274)
Q Consensus 103 s~~~g~~~---~~l~~~~~-~~~~~~~~p~~~~----------~~~~g-~~~i~~~~~~~~~~~~~v~~ll~~~g~~-~~ 166 (274)
++ ++++. +.+++.++ +.+++..||.... ....| ..++++....+++.++.++++++.+|.. +.
T Consensus 77 Dv-~SvK~~~~~~~~~~~~~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~ 155 (258)
T PF02153_consen 77 DV-GSVKAPIVEAMERLLPEGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDPEALELVEELWEALGARVVE 155 (258)
T ss_dssp E---S-CHHHHHHHHHHHTSSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHHHHHHHHCT-EEEE
T ss_pred Ee-CCCCHHHHHHHHHhcCcccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChHHHHHHHHHHHHHCCCEEEE
Confidence 76 55554 45556666 6789999986321 11123 3556777666778999999999999964 88
Q ss_pred cCccchhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHHHH
Q 024016 167 ADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAG 246 (274)
Q Consensus 167 ~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~ 246 (274)
++.++||..+|.+++.|++++.. ++....+.+.+......+..++|+.+++++. .+|..|.+...++.....+.
T Consensus 156 ~~~eeHD~~~A~vshlpH~~a~a---l~~~~~~~~~~~~~~~~~a~~~frd~tRia~---~~p~l~~~I~~~N~~~~~~~ 229 (258)
T PF02153_consen 156 MDAEEHDRIMAYVSHLPHLLASA---LANTLAELSSDDPDILRLAGGGFRDMTRIAS---SDPELWADIFLSNPENLLEA 229 (258)
T ss_dssp --HHHHHHHHHHHTHHHHHHHHH---HHHHHHHHHHHHHHHHHHGTHHHHHHHGGGG---S-HHHHHHHHHHTHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHH---HHHHHHhcCCChHHHHhhcchhHHhhccccc---CChHHHHHHHHHCHHHHHHH
Confidence 99999999999999999887653 3333333333456677888899999988764 58999999988887777777
Q ss_pred HHHHHhC--CHHHHHH
Q 024016 247 IHELEKS--GFRGILM 260 (274)
Q Consensus 247 l~~l~~~--~~~~~~~ 260 (274)
++.+++. .++..+.
T Consensus 230 l~~~~~~L~~l~~~l~ 245 (258)
T PF02153_consen 230 LDEFIKELNELREALE 245 (258)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777664 4444443
No 49
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.83 E-value=1.6e-18 Score=150.59 Aligned_cols=217 Identities=15% Similarity=0.084 Sum_probs=150.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHH-----------HHcC-------------ceeccCch
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF-----------ESIG-------------VKVLSDNN 66 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l-----------~~~g-------------~~~~~~~~ 66 (274)
++|+|||+|.||++|+..|.++|+ +|++| ||++++.+.. .+.| +....+..
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~----~V~v~-d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~ 77 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGH----EVRLW-DADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLA 77 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCC----eeEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHH
Confidence 589999999999999999999999 99999 9998776643 2334 25667777
Q ss_pred hhccCCCEEEEeeCcc--cHHHHHHHhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHhhcCCceEEecC
Q 024016 67 AVVEYSDVVVFSVKPQ--VVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSLG 143 (274)
Q Consensus 67 ~~~~~aDiIil~v~~~--~~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~i~~~ 143 (274)
+++++||+||.|+|.+ ....++.++....+++.++.|.+++.....+++.+. ...++..||..|.... ....++++
T Consensus 78 ~a~~~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~~~~~la~~~~~~~~~~~~hp~~p~~~~-~lveiv~~ 156 (308)
T PRK06129 78 DAVADADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLASAFTEHLAGRERCLVAHPINPPYLI-PVVEVVPA 156 (308)
T ss_pred HhhCCCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCCCCCHHHHHHhcCCcccEEEEecCCCcccC-ceEEEeCC
Confidence 8889999999999865 355667777666666777777777777888888775 2457777887664332 24456777
Q ss_pred CCCCHHHHHHHHHHhhhcCCe-EEcCccchhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Q 024016 144 GTATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMV 222 (274)
Q Consensus 144 ~~~~~~~~~~v~~ll~~~g~~-~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~~~~~~~~ 222 (274)
..++++.++.++++++.+|+. ++++++....+.. ..+...+.|++. .+.+.|+++++..+++..++.....+
T Consensus 157 ~~t~~~~~~~~~~~~~~lG~~~v~v~~~~~G~i~n-----rl~~a~~~EA~~-l~~~g~~~~~~id~~~~~~~g~~~~~- 229 (308)
T PRK06129 157 PWTAPATLARAEALYRAAGQSPVRLRREIDGFVLN-----RLQGALLREAFR-LVADGVASVDDIDAVIRDGLGLRWSF- 229 (308)
T ss_pred CCCCHHHHHHHHHHHHHcCCEEEEecCCCccHHHH-----HHHHHHHHHHHH-HHHcCCCCHHHHHHHHHhccCCCccC-
Confidence 778999999999999999975 7776543332110 111222233332 24577799999988887655433211
Q ss_pred HhcCCChHHHHHhcCCCCchHHH
Q 024016 223 TKSGKHPGQLKDDVASPGGTTIA 245 (274)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~g~t~~ 245 (274)
..|..+.+. ..|+|....
T Consensus 230 ----~gp~~~~d~-~~~~g~~~~ 247 (308)
T PRK06129 230 ----MGPFETIDL-NAPGGVADY 247 (308)
T ss_pred ----cCHHHHHhc-cccccHHHH
Confidence 245566554 466665444
No 50
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=99.82 E-value=1.8e-18 Score=151.03 Aligned_cols=208 Identities=21% Similarity=0.224 Sum_probs=146.0
Q ss_pred CeEEEEcccHH--------------------HHHHHHHHHhCCCCCCCcEEEEeCCCHH-----HHHHHHHcCceeccCc
Q 024016 11 FILGFIGAGKM--------------------AESIAKGVAKSGVLPPDRICTAVHSNLK-----RRDAFESIGVKVLSDN 65 (274)
Q Consensus 11 ~~IgiIG~G~m--------------------G~~~a~~L~~~g~~~~~~v~v~~~r~~~-----~~~~l~~~g~~~~~~~ 65 (274)
|||.|.|+||- |.+||.+|.++|| +|++| ||+++ +.+.+.+.|+.+++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~aG~----~V~v~-Dr~~~~l~~~~~~~l~~~Gi~~asd~ 75 (342)
T PRK12557 1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEAGH----DVVLA-EPNRSILSEELWKKVEDAGVKVVSDD 75 (342)
T ss_pred CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhCCC----eEEEE-ECCHHHhhHHHHHHHHHCCCEEeCCH
Confidence 68999999984 8899999999999 99999 99987 4455666888888888
Q ss_pred hhhccCCCEEEEeeCccc-HHHHHHHhccccCCCCEEEEecCCCCHH----HHHHhhC-CCceEEEcCCcHHhh----cC
Q 024016 66 NAVVEYSDVVVFSVKPQV-VKDVAMQIRPLLSRKKLLVSVAAGVKLK----DLQEWTG-HSRFIRVMPNTPSAV----GE 135 (274)
Q Consensus 66 ~~~~~~aDiIil~v~~~~-~~~v~~~i~~~l~~~~~vis~~~g~~~~----~l~~~~~-~~~~~~~~p~~~~~~----~~ 135 (274)
.+++++||+||+|+|++. +++++.++.+.++++++||+++++ +.. .+++.++ ..+..++++.+|..+ ..
T Consensus 76 ~eaa~~ADvVIlaVP~~~~v~~Vl~~L~~~L~~g~IVId~ST~-~~~~~s~~l~~~l~~~~~~~gi~~~~p~~v~Gae~g 154 (342)
T PRK12557 76 AEAAKHGEIHILFTPFGKKTVEIAKNILPHLPENAVICNTCTV-SPVVLYYSLEGELRTKRKDVGISSMHPAAVPGTPQH 154 (342)
T ss_pred HHHHhCCCEEEEECCCcHHHHHHHHHHHhhCCCCCEEEEecCC-CHHHHHHHHHHHhcccccccCeeecCCccccccccc
Confidence 888999999999999887 899999999999899998987554 433 3445554 122334444444322 23
Q ss_pred CceEEecC-----CCCCHHHHHHHHHHhhhcCCe-EEcCccchhhHHHhhcchHHHHHHHHHHHHHH---HHHcCCCHH-
Q 024016 136 AATVMSLG-----GTATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADG---GVAAGLPRE- 205 (274)
Q Consensus 136 g~~~i~~~-----~~~~~~~~~~v~~ll~~~g~~-~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~---~~~~Gl~~~- 205 (274)
+.+++..+ ...+++.+++++++|+.+|.. +++++...+. ..-..+.+.+....++.|+ +++.|.+++
T Consensus 155 ~l~Vm~gg~t~~~~~~~~e~~e~v~~LL~a~G~~v~~~~~g~~~~---vk~~~n~l~av~~a~~aE~~~l~~~~~~~p~~ 231 (342)
T PRK12557 155 GHYVIAGKTTNGTELATEEQIEKCVELAESIGKEPYVVPADVVSA---VADMGSLVTAVALSGVLDYYSVGTKIIKAPKE 231 (342)
T ss_pred hheEEeCCCcccccCCCHHHHHHHHHHHHHcCCEEEEeCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 34454422 234788899999999999975 6677532222 1112223333344444444 346666654
Q ss_pred HHHHHHHHHHHHHHHHHHhcCC
Q 024016 206 LALGLASQTVLGAASMVTKSGK 227 (274)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~ 227 (274)
.+.+++.+++.+++.+++++|.
T Consensus 232 ~~~~~~~~~~~~~a~l~~~~~~ 253 (342)
T PRK12557 232 MIEKQILMTLQTMASLVETSGV 253 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHhCh
Confidence 6778999999999999987663
No 51
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.81 E-value=5.8e-18 Score=148.46 Aligned_cols=195 Identities=18% Similarity=0.191 Sum_probs=135.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc--------C------ceeccCchhhccCCCE
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI--------G------VKVLSDNNAVVEYSDV 74 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~--------g------~~~~~~~~~~~~~aDi 74 (274)
.+|||+|||+|+||++|+.+|.++|| +|++| +|++++.+.+.+. | +...+++.++++++|+
T Consensus 3 ~~m~I~iIG~G~mG~~ia~~L~~~G~----~V~~~-~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~ 77 (328)
T PRK14618 3 HGMRVAVLGAGAWGTALAVLAASKGV----PVRLW-ARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADF 77 (328)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCC----eEEEE-eCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCE
Confidence 45799999999999999999999999 99999 9999888877753 3 3455677788889999
Q ss_pred EEEeeCcccHHHHHHHhccccCCCCEEEEecCCCC-----HHHHHHhhCC---Cc-eEEEcCCcHHhhcCCceEEecCCC
Q 024016 75 VVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVK-----LKDLQEWTGH---SR-FIRVMPNTPSAVGEAATVMSLGGT 145 (274)
Q Consensus 75 Iil~v~~~~~~~v~~~i~~~l~~~~~vis~~~g~~-----~~~l~~~~~~---~~-~~~~~p~~~~~~~~g~~~i~~~~~ 145 (274)
||+|+|+++++++++.+ +++.++|++++|+. ...+.+.++. .. .+...|+.+...+.+...+....+
T Consensus 78 Vi~~v~~~~~~~v~~~l----~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~gP~~a~~~~~~~~~~~~~~~ 153 (328)
T PRK14618 78 AVVAVPSKALRETLAGL----PRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLSGPNHAEEIARFLPAATVVAS 153 (328)
T ss_pred EEEECchHHHHHHHHhc----CcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEECccHHHHHHcCCCeEEEEEe
Confidence 99999999988887654 46778999988875 3455555421 22 345678888777665422111112
Q ss_pred CCHHHHHHHHHHhhhcCCeEEcCccchh---------hHHHhhcc-------hHHHHHHHHHHHHHH---HHHcCCCHHH
Q 024016 146 ATEEDGELIGKLFGSVGKIWRADEKLFD---------AITGLSGS-------GPAYIFLAIEALADG---GVAAGLPREL 206 (274)
Q Consensus 146 ~~~~~~~~v~~ll~~~g~~~~~~e~~~~---------~~~a~~~~-------~~~~~~~~~~~l~e~---~~~~Gl~~~~ 206 (274)
.+++.+++++++|+..|..++.+++... .....+|. .+...+.+..++.|. +++.|++++.
T Consensus 154 ~~~~~~~~v~~ll~~~~~~v~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G~~~~~ 233 (328)
T PRK14618 154 PEPGLARRVQAAFSGPSFRVYTSRDRVGVELGGALKNVIALAAGMVDGLKLGDNAKAALITRGLREMVRFGVALGAEEAT 233 (328)
T ss_pred CCHHHHHHHHHHhCCCcEEEEecCCccchhhhHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 3788899999999999976554433211 11111111 112233445555554 4689999999
Q ss_pred HHHHHH
Q 024016 207 ALGLAS 212 (274)
Q Consensus 207 ~~~~~~ 212 (274)
++++..
T Consensus 234 ~~~~~~ 239 (328)
T PRK14618 234 FYGLSG 239 (328)
T ss_pred hhcCcc
Confidence 888755
No 52
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=99.80 E-value=1.1e-17 Score=144.58 Aligned_cols=155 Identities=17% Similarity=0.203 Sum_probs=122.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHH-----------HHHcC------------ceeccCc
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA-----------FESIG------------VKVLSDN 65 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~-----------l~~~g------------~~~~~~~ 65 (274)
..+||+|||+|.||.+||..|+++|+ +|++| |+++++.+. +.+.| .....+.
T Consensus 3 ~~~~V~vIG~G~mG~~iA~~l~~~G~----~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 77 (295)
T PLN02545 3 EIKKVGVVGAGQMGSGIAQLAAAAGM----DVWLL-DSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTN 77 (295)
T ss_pred CcCEEEEECCCHHHHHHHHHHHhcCC----eEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCC
Confidence 44689999999999999999999999 99999 999987653 22222 2223344
Q ss_pred hhhccCCCEEEEeeC--cccHHHHHHHhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHhhcCCceEEec
Q 024016 66 NAVVEYSDVVVFSVK--PQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSL 142 (274)
Q Consensus 66 ~~~~~~aDiIil~v~--~~~~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~i~~ 142 (274)
.+.+++||+||+|+| ++....++.++.+.++++++++|.++++++..+++.+. ..++++.|+..|...... ..++.
T Consensus 78 ~~~~~~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~~~~~~~r~~g~h~~~pp~~~~l-veiv~ 156 (295)
T PLN02545 78 LEELRDADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLASATQRPQQVIGMHFMNPPPIMKL-VEIIR 156 (295)
T ss_pred HHHhCCCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEeccCCcccCce-EEEeC
Confidence 567899999999998 66677788888888889988888899999999988776 367888988776655433 45667
Q ss_pred CCCCCHHHHHHHHHHhhhcCCe-EEcCc
Q 024016 143 GGTATEEDGELIGKLFGSVGKI-WRADE 169 (274)
Q Consensus 143 ~~~~~~~~~~~v~~ll~~~g~~-~~~~e 169 (274)
+...+++.++.++++|+.+|+. +++.+
T Consensus 157 g~~t~~e~~~~~~~ll~~lG~~~~~~~d 184 (295)
T PLN02545 157 GADTSDEVFDATKALAERFGKTVVCSQD 184 (295)
T ss_pred CCCCCHHHHHHHHHHHHHcCCeeEEecC
Confidence 7778999999999999999986 55543
No 53
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.80 E-value=1.3e-17 Score=143.92 Aligned_cols=155 Identities=22% Similarity=0.272 Sum_probs=121.2
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-----------cC-------------ceecc
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----------IG-------------VKVLS 63 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-----------~g-------------~~~~~ 63 (274)
|+.+||+|||+|.||.+||..|.++|+ +|++| +|++++++.+.+ .| ++..+
T Consensus 2 ~~~~kI~vIGaG~mG~~iA~~la~~G~----~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~ 76 (292)
T PRK07530 2 MAIKKVGVIGAGQMGNGIAHVCALAGY----DVLLN-DVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTAT 76 (292)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCC----eEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeC
Confidence 355799999999999999999999999 99999 999988765432 13 34445
Q ss_pred CchhhccCCCEEEEeeCcc--cHHHHHHHhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHhhcCCceEE
Q 024016 64 DNNAVVEYSDVVVFSVKPQ--VVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVM 140 (274)
Q Consensus 64 ~~~~~~~~aDiIil~v~~~--~~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~i 140 (274)
+. +.+++||+||.|+|.+ ..+.++.++.+.++++++++|.++++++..+++.+. ..++++.|+..|.....+. .+
T Consensus 77 ~~-~~~~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s~la~~~~~~~r~~g~h~~~p~~~~~~v-ei 154 (292)
T PRK07530 77 DL-EDLADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISITRLASATDRPERFIGIHFMNPVPVMKLV-EL 154 (292)
T ss_pred CH-HHhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEeeccCCcccCceE-EE
Confidence 55 4578999999999864 356777888888899999998889999888887764 2467777766665544444 45
Q ss_pred ecCCCCCHHHHHHHHHHhhhcCCe-EEcCc
Q 024016 141 SLGGTATEEDGELIGKLFGSVGKI-WRADE 169 (274)
Q Consensus 141 ~~~~~~~~~~~~~v~~ll~~~g~~-~~~~e 169 (274)
..+..++++.++.+.++++.+|+. +++.+
T Consensus 155 ~~g~~t~~~~~~~~~~~~~~~gk~~v~~~d 184 (292)
T PRK07530 155 IRGIATDEATFEAAKEFVTKLGKTITVAED 184 (292)
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCeEEEecC
Confidence 667778999999999999999975 66544
No 54
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=99.80 E-value=2.5e-18 Score=142.23 Aligned_cols=151 Identities=23% Similarity=0.330 Sum_probs=119.6
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc--------Cc--e-eccCchhhccCCCEEEEe
Q 024016 11 FILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI--------GV--K-VLSDNNAVVEYSDVVVFS 78 (274)
Q Consensus 11 ~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~--------g~--~-~~~~~~~~~~~aDiIil~ 78 (274)
|||+||| +|+||++++..|.++|+ +|++| +|++++.+.+.+. |. . ...+..+.++++|+||+|
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~----~V~v~-~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVila 75 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGN----KIIIG-SRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILA 75 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCC----EEEEE-EcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEE
Confidence 5899997 89999999999999998 99999 9999888766541 22 1 123556778899999999
Q ss_pred eCcccHHHHHHHhccccCCCCEEEEecCCCCH-----------------HHHHHhhCC-CceEEEcCCcHHhhcC-----
Q 024016 79 VKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKL-----------------KDLQEWTGH-SRFIRVMPNTPSAVGE----- 135 (274)
Q Consensus 79 v~~~~~~~v~~~i~~~l~~~~~vis~~~g~~~-----------------~~l~~~~~~-~~~~~~~p~~~~~~~~----- 135 (274)
+|++.+.+++.++.+.+. +++|||+++|++. +.+++++|+ .++++.+|+.+.....
T Consensus 76 vp~~~~~~~l~~l~~~l~-~~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~~~~VVka~~~~~a~~~~~~~~~ 154 (219)
T TIGR01915 76 VPWDHVLKTLESLRDELS-GKLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPETSRVVAAFHNLSAVLLQDVDDE 154 (219)
T ss_pred CCHHHHHHHHHHHHHhcc-CCEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCCCCeEeeccccCCHHHhcCCCCC
Confidence 999999999998877664 4899999999876 567888886 7899999988765432
Q ss_pred -CceEEecCCCCCHHHHHHHHHHhhhc-CCe-EEcCc
Q 024016 136 -AATVMSLGGTATEEDGELIGKLFGSV-GKI-WRADE 169 (274)
Q Consensus 136 -g~~~i~~~~~~~~~~~~~v~~ll~~~-g~~-~~~~e 169 (274)
+...+++|+ ++++.+.+..+.+.+ |.. +..+.
T Consensus 155 ~~~~~~v~Gd--d~~ak~~v~~L~~~~~G~~~vd~G~ 189 (219)
T TIGR01915 155 VDCDVLVCGD--DEEAKEVVAELAGRIDGLRALDAGP 189 (219)
T ss_pred CCCCEEEECC--CHHHHHHHHHHHHhcCCCCcccCCc
Confidence 233455554 577889999999999 864 66553
No 55
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.79 E-value=2.3e-17 Score=142.29 Aligned_cols=154 Identities=18% Similarity=0.271 Sum_probs=124.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH--------------cC-------------cee
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES--------------IG-------------VKV 61 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~--------------~g-------------~~~ 61 (274)
+..||+|||+|.||.+|+..|.++|+ +|++| |+++++.+...+ .| +..
T Consensus 2 ~i~~I~ViGaG~mG~~iA~~la~~G~----~V~l~-d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~ 76 (291)
T PRK06035 2 DIKVIGVVGSGVMGQGIAQVFARTGY----DVTIV-DVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRT 76 (291)
T ss_pred CCcEEEEECccHHHHHHHHHHHhcCC----eEEEE-eCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEe
Confidence 34689999999999999999999999 99999 999987754321 12 123
Q ss_pred ccCchhhccCCCEEEEeeCccc--HHHHHHHhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHhhcCCce
Q 024016 62 LSDNNAVVEYSDVVVFSVKPQV--VKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAAT 138 (274)
Q Consensus 62 ~~~~~~~~~~aDiIil~v~~~~--~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~ 138 (274)
.++. +.+++||+||+|+|++. ..+++.++.+.++++++++|.++++++..+++.+. ..++++.|+..|.....++.
T Consensus 77 ~~~~-~~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~la~~~~~~~r~ig~hf~~P~~~~~~vE 155 (291)
T PRK06035 77 STSY-ESLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEIATALERKDRFIGMHWFNPAPVMKLIE 155 (291)
T ss_pred eCCH-HHhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCccEE
Confidence 3333 56789999999998764 67788888888889999999999999999988775 35789999998877666655
Q ss_pred EEecCCCCCHHHHHHHHHHhhhcCCe-EEcCc
Q 024016 139 VMSLGGTATEEDGELIGKLFGSVGKI-WRADE 169 (274)
Q Consensus 139 ~i~~~~~~~~~~~~~v~~ll~~~g~~-~~~~e 169 (274)
+ ..+...+++.++.+.++++.+|+. +++.+
T Consensus 156 v-~~g~~T~~e~~~~~~~~~~~lgk~~v~v~d 186 (291)
T PRK06035 156 V-VRAALTSEETFNTTVELSKKIGKIPIEVAD 186 (291)
T ss_pred E-eCCCCCCHHHHHHHHHHHHHcCCeEEEeCC
Confidence 4 478888999999999999999976 66654
No 56
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.79 E-value=4.5e-17 Score=140.17 Aligned_cols=159 Identities=13% Similarity=0.108 Sum_probs=124.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-------------------------cCceecc
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-------------------------IGVKVLS 63 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-------------------------~g~~~~~ 63 (274)
..+||+|||+|.||.+||..|..+|+ +|++| ++++++.+.+.+ .+++..+
T Consensus 2 ~~~kIaViGaG~mG~~iA~~la~~G~----~V~l~-d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 76 (287)
T PRK08293 2 DIKNVTVAGAGVLGSQIAFQTAFHGF----DVTIY-DISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTT 76 (287)
T ss_pred CccEEEEECCCHHHHHHHHHHHhcCC----eEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeC
Confidence 35689999999999999999999999 99999 999887655432 1234566
Q ss_pred CchhhccCCCEEEEeeCcc--cHHHHHHHhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHhhcCCceEE
Q 024016 64 DNNAVVEYSDVVVFSVKPQ--VVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVM 140 (274)
Q Consensus 64 ~~~~~~~~aDiIil~v~~~--~~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~i 140 (274)
+..+++++||+||.|+|.+ ...+++.++.+.+++++++++.+++.+++.+.+.++ ..+++..||..|... .....+
T Consensus 77 d~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~~~~~~~~~~r~vg~Hf~~p~~~-~~lvev 155 (287)
T PRK08293 77 DLAEAVKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAEATGRPEKFLALHFANEIWK-NNTAEI 155 (287)
T ss_pred CHHHHhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHHHHhhcCCcccEEEEcCCCCCCc-CCeEEE
Confidence 7777889999999999855 577888888888888888878888888888877665 356888888777542 234456
Q ss_pred ecCCCCCHHHHHHHHHHhhhcCCe-EEcCccchh
Q 024016 141 SLGGTATEEDGELIGKLFGSVGKI-WRADEKLFD 173 (274)
Q Consensus 141 ~~~~~~~~~~~~~v~~ll~~~g~~-~~~~e~~~~ 173 (274)
++++..+++.++.+.++++.+|+. +.+..+.++
T Consensus 156 v~~~~t~~~~~~~~~~~~~~~Gk~pv~v~~d~pg 189 (287)
T PRK08293 156 MGHPGTDPEVFDTVVAFAKAIGMVPIVLKKEQPG 189 (287)
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCeEEEecCCCCC
Confidence 677788999999999999999975 666544333
No 57
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=99.78 E-value=6.1e-19 Score=126.86 Aligned_cols=94 Identities=34% Similarity=0.621 Sum_probs=79.7
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceecc-CchhhccCCCEEEEeeCcccHHHHHH
Q 024016 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLS-DNNAVVEYSDVVVFSVKPQVVKDVAM 89 (274)
Q Consensus 12 ~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~~-~~~~~~~~aDiIil~v~~~~~~~v~~ 89 (274)
||||||+|+||.+|+++|.++|+ .+.+|+++++|++++.+++.+ .++.... ++.++++++|+||+|+||+++.+++.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~-~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~p~~~~~v~~ 79 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGI-KPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVKPQQLPEVLS 79 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS--GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S-GGGHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-CceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEECHHHHHHHHH
Confidence 79999999999999999999994 344898433999999999876 6776655 78899999999999999999999999
Q ss_pred HhccccCCCCEEEEecCC
Q 024016 90 QIRPLLSRKKLLVSVAAG 107 (274)
Q Consensus 90 ~i~~~l~~~~~vis~~~g 107 (274)
++ +...+++++||+++|
T Consensus 80 ~i-~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 80 EI-PHLLKGKLVISIAAG 96 (96)
T ss_dssp HH-HHHHTTSEEEEESTT
T ss_pred HH-hhccCCCEEEEeCCC
Confidence 99 667799999999875
No 58
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.78 E-value=4.3e-17 Score=140.38 Aligned_cols=153 Identities=18% Similarity=0.155 Sum_probs=121.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-------c-----------------CceeccCch
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-------I-----------------GVKVLSDNN 66 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-------~-----------------g~~~~~~~~ 66 (274)
+||+|||+|.||.+||..|.++|+ +|++| |+++++.+.+.+ . +++.+++..
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~----~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 76 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGF----QTTLV-DIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLK 76 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCC----cEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHH
Confidence 589999999999999999999999 99999 999988776542 1 134556777
Q ss_pred hhccCCCEEEEeeCccc--HHHHHHHhccccCCCCEEEEecCCCCHHHHHHhhCC-CceEEEcCCcHHhhcCCceEEecC
Q 024016 67 AVVEYSDVVVFSVKPQV--VKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGH-SRFIRVMPNTPSAVGEAATVMSLG 143 (274)
Q Consensus 67 ~~~~~aDiIil~v~~~~--~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~~-~~~~~~~p~~~~~~~~g~~~i~~~ 143 (274)
+.+++||+||+|+|.+. ...++.++.+.+++++++++.+++++++.+.+.+.. .+++..|+..|.+.+ ....++++
T Consensus 77 ~~~~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~~~~~~~r~~g~h~~~Pv~~~-~Lve~v~g 155 (288)
T PRK09260 77 AAVADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIASFTKRPERVIAMHFFNPVHKM-KLVELIRG 155 (288)
T ss_pred HhhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccC-ceEEEeCC
Confidence 88999999999998654 346677888888888887777888999888877653 356677776666443 24556777
Q ss_pred CCCCHHHHHHHHHHhhhcCCe-EEcCc
Q 024016 144 GTATEEDGELIGKLFGSVGKI-WRADE 169 (274)
Q Consensus 144 ~~~~~~~~~~v~~ll~~~g~~-~~~~e 169 (274)
+.++++.++.++++++.+|+. +++++
T Consensus 156 ~~t~~~~~~~~~~~l~~lg~~~v~v~d 182 (288)
T PRK09260 156 LETSDETVQVAKEVAEQMGKETVVVNE 182 (288)
T ss_pred CCCCHHHHHHHHHHHHHcCCeEEEecC
Confidence 778999999999999999975 67664
No 59
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=99.77 E-value=1.1e-16 Score=135.13 Aligned_cols=207 Identities=21% Similarity=0.204 Sum_probs=146.8
Q ss_pred CeEEEEcccHH--------------------HHHHHHHHHhCCCCCCCcEEEEeCCCHHHH-----HHHHHcCceeccCc
Q 024016 11 FILGFIGAGKM--------------------AESIAKGVAKSGVLPPDRICTAVHSNLKRR-----DAFESIGVKVLSDN 65 (274)
Q Consensus 11 ~~IgiIG~G~m--------------------G~~~a~~L~~~g~~~~~~v~v~~~r~~~~~-----~~l~~~g~~~~~~~ 65 (274)
|||.|.|+||- |++||++|+++|| +|++| ||++++. +.+.+.|+..++++
T Consensus 1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAGh----eV~V~-Drnrsa~e~e~~e~LaeaGA~~AaS~ 75 (341)
T TIGR01724 1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAGH----DVVLA-EPNREFMSDDLWKKVEDAGVKVVSDD 75 (341)
T ss_pred CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCCC----EEEEE-eCChhhhhhhhhHHHHHCCCeecCCH
Confidence 68999999984 8899999999999 99999 9987654 35777899998899
Q ss_pred hhhccCCCEEEEeeCcc-cHHHHHHHhccccCCCCEEEEecCCCCHHHHHHhhC--------CCceEEEcCCc-HHhhcC
Q 024016 66 NAVVEYSDVVVFSVKPQ-VVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG--------HSRFIRVMPNT-PSAVGE 135 (274)
Q Consensus 66 ~~~~~~aDiIil~v~~~-~~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~--------~~~~~~~~p~~-~~~~~~ 135 (274)
.++++++|+||+|+|.. ++++++.++.+++++|+++|++ ++++++.+.+.+. +..+.++||.. |..-++
T Consensus 76 aEAAa~ADVVIL~LPd~aaV~eVl~GLaa~L~~GaIVID~-STIsP~t~~~~~e~~l~~~r~d~~v~s~HP~~vP~~~~~ 154 (341)
T TIGR01724 76 KEAAKHGEIHVLFTPFGKGTFSIARTIIEHVPENAVICNT-CTVSPVVLYYSLEKILRLKRTDVGISSMHPAAVPGTPQH 154 (341)
T ss_pred HHHHhCCCEEEEecCCHHHHHHHHHHHHhcCCCCCEEEEC-CCCCHHHHHHHHHHHhhcCccccCeeccCCCCCCCCCCC
Confidence 99999999999999855 5789988888889999999976 6677765544332 34567777753 333344
Q ss_pred CceEEec----C-CCCCHHHHHHHHHHhhhcCCe-EEcCccchhhHHHhhcchHHHHHHHHHHHH---HHH-HHcCCCHH
Q 024016 136 AATVMSL----G-GTATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALA---DGG-VAAGLPRE 205 (274)
Q Consensus 136 g~~~i~~----~-~~~~~~~~~~v~~ll~~~g~~-~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~---e~~-~~~Gl~~~ 205 (274)
+..++.. + .-.++++++++.++.+..|+. +.++.+....+.-+++ ...+....++. +.+ +-.|-+.+
T Consensus 155 ~~~~~~~~~~~~~~~A~ee~i~~~~el~~~~~~~~~~~pa~l~~~v~Dm~s---~vta~~~~gil~y~~~~t~i~~ap~~ 231 (341)
T TIGR01724 155 GHYVIGGKPTAGKEMATEEQISKCVELAKSTGKKAYVVPADVTSAVADMGS---LVTAVALAGVLDYYYVGTQIINAPKE 231 (341)
T ss_pred ceeeeccccccccccCCHHHHHHHHHHHHHhCCCeeecchhhcchhhhHHH---HHHHHHHHHHHHHHHHHHHHhcCcHH
Confidence 3333221 1 124689999999999999976 7788766655544432 22122222222 223 34677877
Q ss_pred HHHHHHHHHHHHHHHHHHhcC
Q 024016 206 LALGLASQTVLGAASMVTKSG 226 (274)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~ 226 (274)
.+.+.+..++...+.+++.+|
T Consensus 232 ~~~~~~~~~l~~~a~l~~~~G 252 (341)
T TIGR01724 232 MIEKQILMTLQTMASLVETSG 252 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 777777777777777766554
No 60
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=99.76 E-value=1e-18 Score=130.66 Aligned_cols=115 Identities=17% Similarity=0.319 Sum_probs=82.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeccCchhhccCCCEEEEeeCcccHHHH
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVVKDV 87 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v 87 (274)
..+||+|||+|++|.++++.|.++|| +|..+++|++++.+++.. .+.....+..+.++++|++|++||++.+.++
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag~----~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDdaI~~v 84 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAGH----EVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDDAIAEV 84 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTTS----EEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CCHHHHH
T ss_pred CccEEEEECCCHHHHHHHHHHHHCCC----eEEEEEeCCcccccccccccccccccccccccccCCEEEEEechHHHHHH
Confidence 35899999999999999999999999 886554999988888776 3444445678889999999999999999999
Q ss_pred HHHhccc--cCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcC
Q 024016 88 AMQIRPL--LSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMP 127 (274)
Q Consensus 88 ~~~i~~~--l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p 127 (274)
.++|... ++++++|+++++..+.+.|+.... ++.+..+||
T Consensus 85 a~~La~~~~~~~g~iVvHtSGa~~~~vL~p~~~~Ga~~~s~HP 127 (127)
T PF10727_consen 85 AEQLAQYGAWRPGQIVVHTSGALGSDVLAPARERGAIVASLHP 127 (127)
T ss_dssp HHHHHCC--S-TT-EEEES-SS--GGGGHHHHHTT-EEEEEEE
T ss_pred HHHHHHhccCCCCcEEEECCCCChHHhhhhHHHCCCeEEEeCc
Confidence 9999876 789999999999888887766443 456666665
No 61
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.76 E-value=4.3e-16 Score=137.08 Aligned_cols=158 Identities=16% Similarity=0.156 Sum_probs=121.9
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc---------C------ceeccCchhhcc
Q 024016 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI---------G------VKVLSDNNAVVE 70 (274)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~---------g------~~~~~~~~~~~~ 70 (274)
..+.+|||+|||+|+||++++..|.++| ++++| .|+++..+.+.+. + +...++..++++
T Consensus 3 ~~~~~mkI~IiGaGa~G~alA~~La~~g-----~v~l~-~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~ 76 (341)
T PRK12439 3 AAKREPKVVVLGGGSWGTTVASICARRG-----PTLQW-VRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAAN 76 (341)
T ss_pred cccCCCeEEEECCCHHHHHHHHHHHHCC-----CEEEE-eCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHh
Confidence 3445689999999999999999999987 47889 8999888777642 1 234456667788
Q ss_pred CCCEEEEeeCcccHHHHHHHhccccCCCCEEEEecCCCCH-------HHHHHhhCCCc-eEEEcCCcHHhhcCCceE-Ee
Q 024016 71 YSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKL-------KDLQEWTGHSR-FIRVMPNTPSAVGEAATV-MS 141 (274)
Q Consensus 71 ~aDiIil~v~~~~~~~v~~~i~~~l~~~~~vis~~~g~~~-------~~l~~~~~~~~-~~~~~p~~~~~~~~g~~~-i~ 141 (274)
++|+||+|+|++.++++++++.+++++++.+|++++|+.. +.+++.+++.+ .+...|+.+.++..|... ++
T Consensus 77 ~aDlVilavps~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~~~~~~l~GP~~a~ev~~g~~t~~v 156 (341)
T PRK12439 77 CADVVVMGVPSHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPGHPAGILAGPNIAREVAEGYAAAAV 156 (341)
T ss_pred cCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCCCCeEEEECCCHHHHHHcCCCeEEE
Confidence 9999999999999999999999999888899999999985 46777666333 456779999888777633 22
Q ss_pred cCCCCCHHHHHHHHHHhhhcCCeEEcCcc
Q 024016 142 LGGTATEEDGELIGKLFGSVGKIWRADEK 170 (274)
Q Consensus 142 ~~~~~~~~~~~~v~~ll~~~g~~~~~~e~ 170 (274)
.+ ..+++..+.++.+|+.-+..++.+++
T Consensus 157 ia-~~~~~~~~~v~~lf~~~~~~v~~s~D 184 (341)
T PRK12439 157 LA-MPDQHLATRLSPLFRTRRFRVYTTDD 184 (341)
T ss_pred EE-eCCHHHHHHHHHHhCCCCEEEEEcCc
Confidence 22 22677788899999887765565554
No 62
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=99.75 E-value=4.5e-16 Score=135.08 Aligned_cols=167 Identities=18% Similarity=0.297 Sum_probs=120.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCcee-----------ccCchhhccCCCEEEEee
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-----------LSDNNAVVEYSDVVVFSV 79 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~-----------~~~~~~~~~~aDiIil~v 79 (274)
|||+|||+|+||+.++..|.++|+ +|+++ +|++++.+.+.+.|..+ .++..+. +++|+||+||
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~----~V~~~-~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~ 74 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGH----DVTLV-ARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAV 74 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC----eEEEE-ECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEec
Confidence 589999999999999999999999 99999 99888888877756532 2334443 8899999999
Q ss_pred CcccHHHHHHHhccccCCCCEEEEecCCCC-HHHHHHhhCCCceE---------EEcCCcHHhhcCCceEEecCCCCCHH
Q 024016 80 KPQVVKDVAMQIRPLLSRKKLLVSVAAGVK-LKDLQEWTGHSRFI---------RVMPNTPSAVGEAATVMSLGGTATEE 149 (274)
Q Consensus 80 ~~~~~~~v~~~i~~~l~~~~~vis~~~g~~-~~~l~~~~~~~~~~---------~~~p~~~~~~~~g~~~i~~~~~~~~~ 149 (274)
|+.+++++++.+.+.+.+++.||++.+|+. .+.+.+.++...++ +..|+...+.+.|...+...+. ..+
T Consensus 75 k~~~~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~l~~~~~~~~i~~~~~~~~~~~~~p~~v~~~~~g~~~ig~~~~-~~~ 153 (304)
T PRK06522 75 KAYQLPAALPSLAPLLGPDTPVLFLQNGVGHLEELAAYIGPERVLGGVVTHAAELEGPGVVRHTGGGRLKIGEPDG-ESA 153 (304)
T ss_pred ccccHHHHHHHHhhhcCCCCEEEEecCCCCcHHHHHHhcCcccEEEEEEEEeeEecCCCEEEEcCCCCEEEeCCCC-CcH
Confidence 999999999999998888889999999997 46677766643333 2234443344445444432221 234
Q ss_pred HHHHHHHHhhhcCCeEEcCcc-------------chhhHHHhhcchHH
Q 024016 150 DGELIGKLFGSVGKIWRADEK-------------LFDAITGLSGSGPA 184 (274)
Q Consensus 150 ~~~~v~~ll~~~g~~~~~~e~-------------~~~~~~a~~~~~~~ 184 (274)
..+.+.++|+..|..+...++ .++.++++.++.+.
T Consensus 154 ~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g 201 (304)
T PRK06522 154 AAEALADLLNAAGLDVEWSPDIRTEIWRKLWVNCVINPLTALLGCTNG 201 (304)
T ss_pred HHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhHHHHHhCCChh
Confidence 467788888888865544443 35667777776543
No 63
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=99.75 E-value=5.3e-16 Score=140.28 Aligned_cols=182 Identities=14% Similarity=0.176 Sum_probs=136.4
Q ss_pred HHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc-----CceeccCchhhccC---CCEEEEeeCc-ccHHHHHHHh
Q 024016 21 MAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI-----GVKVLSDNNAVVEY---SDVVVFSVKP-QVVKDVAMQI 91 (274)
Q Consensus 21 mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~-----g~~~~~~~~~~~~~---aDiIil~v~~-~~~~~v~~~i 91 (274)
||..||++|+++|| +|.+| ||++++.+.+.+. |+..+.++.++++. +|+||+|||. +.+++|+.++
T Consensus 1 MG~~mA~nL~~~G~----~V~v~-nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi~~l 75 (459)
T PRK09287 1 MGKNLALNIASHGY----TVAVY-NRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVIEQL 75 (459)
T ss_pred CcHHHHHHHHhCCC----eEEEE-CCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHHHHH
Confidence 89999999999999 99999 9999999999873 47888899988874 8999999985 4689999999
Q ss_pred ccccCCCCEEEEecCCCCHHH--HHHhhC--CCceEEE-cCCcHHhhcCCceEEecCCCCCHHHHHHHHHHhhhcCC-e-
Q 024016 92 RPLLSRKKLLVSVAAGVKLKD--LQEWTG--HSRFIRV-MPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGK-I- 164 (274)
Q Consensus 92 ~~~l~~~~~vis~~~g~~~~~--l~~~~~--~~~~~~~-~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~g~-~- 164 (274)
.+.+.+|.+||++++....+. ..+.+. +..++.+ +...+.....|.+++..| ++++++.++++|+.++. .
T Consensus 76 ~~~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~gA~~G~siM~GG---~~~a~~~~~piL~~ia~~~~ 152 (459)
T PRK09287 76 LPLLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEEGALHGPSIMPGG---QKEAYELVAPILEKIAAKVE 152 (459)
T ss_pred HhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCEEEEeC---CHHHHHHHHHHHHHHhhhhc
Confidence 999999999998866544332 223332 3444443 234455556787665544 78999999999999984 3
Q ss_pred ------EEcCccchhhHHHhhcchHHHHHHHHHHHHHHH---H-HcCCCHHHHHHHHH
Q 024016 165 ------WRADEKLFDAITGLSGSGPAYIFLAIEALADGG---V-AAGLPRELALGLAS 212 (274)
Q Consensus 165 ------~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~~---~-~~Gl~~~~~~~~~~ 212 (274)
.++++..-.....++. +.+.+..++++.|+. + +.|++.++..+++.
T Consensus 153 ~g~~c~~~vG~~GaGh~vKmvh--N~ie~~~mq~iaEa~~l~~~~~Gl~~~~l~~v~~ 208 (459)
T PRK09287 153 DGEPCVTYIGPDGAGHYVKMVH--NGIEYGDMQLIAEAYDLLKDGLGLSAEEIADVFA 208 (459)
T ss_pred CCCCceeeeCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 6788765555555543 445555667777763 4 47999999888883
No 64
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.75 E-value=1.2e-16 Score=138.92 Aligned_cols=182 Identities=20% Similarity=0.252 Sum_probs=123.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccHHHHH
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVA 88 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v~ 88 (274)
+.|||+|||+|+||++|++.|.++|| +|++| +|++. .++.++++++|+||+|+|++.+++++
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~----~V~~~-~r~~~-------------~~~~~~~~~advvi~~vp~~~~~~v~ 64 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGH----RVRVW-SRRSG-------------LSLAAVLADADVIVSAVSMKGVRPVA 64 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCC----EEEEE-eCCCC-------------CCHHHHHhcCCEEEEECChHHHHHHH
Confidence 46799999999999999999999999 99999 99853 35667788999999999999999999
Q ss_pred HHhccc-cCCCCEEEEecCCCCHH-------HHHHhhCCCceEEE-cCCcHHhhcCC--ceEEecCCCCCHHHHHHHHHH
Q 024016 89 MQIRPL-LSRKKLLVSVAAGVKLK-------DLQEWTGHSRFIRV-MPNTPSAVGEA--ATVMSLGGTATEEDGELIGKL 157 (274)
Q Consensus 89 ~~i~~~-l~~~~~vis~~~g~~~~-------~l~~~~~~~~~~~~-~p~~~~~~~~g--~~~i~~~~~~~~~~~~~v~~l 157 (274)
+++.++ +++++++|++++|+.++ .++..+++.+++.. .|+.+..+..+ ...+..+ .+.+..+.++++
T Consensus 65 ~~l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~~~~~~~v~~i~gp~~a~ei~~~~~~~~~~ag--~~~~~~~~v~~l 142 (308)
T PRK14619 65 EQVQALNLPPETIIVTATKGLDPETTRTPSQIWQAAFPNHPVVVLSGPNLSKEIQQGLPAATVVAS--RDLAAAETVQQI 142 (308)
T ss_pred HHHHHhcCCCCcEEEEeCCcccCCCCcCHHHHHHHHcCCCceEEEECCCcHHHHhcCCCeEEEEEe--CCHHHHHHHHHH
Confidence 888764 67888999988766543 23333444455422 35555443333 2233333 268899999999
Q ss_pred hhhcCCeEEcCccch--------hhHHHh-hc-------chHHHHHHHHHHHHHH---HHHcCCCHHHHHHH
Q 024016 158 FGSVGKIWRADEKLF--------DAITGL-SG-------SGPAYIFLAIEALADG---GVAAGLPRELALGL 210 (274)
Q Consensus 158 l~~~g~~~~~~e~~~--------~~~~a~-~~-------~~~~~~~~~~~~l~e~---~~~~Gl~~~~~~~~ 210 (274)
|+..|...+...+.. ..+.++ +| ..+.....+..++.|. +++.|++++.++++
T Consensus 143 l~~~~~~~~~~~d~~G~~~~~alkNv~ai~~G~~~~~~l~~N~~~a~~~~~~~E~~~l~~~~G~~~~t~~~~ 214 (308)
T PRK14619 143 FSSERFRVYTNSDPLGTELGGTLKNVIAIAAGVCDGLQLGTNAKAALVTRALPEMIRVGTHLGAQTETFYGL 214 (308)
T ss_pred hCCCcEEEEecCCchhhhhHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhCCCccccccc
Confidence 999985533232211 111111 11 1122334455556555 46889998887764
No 65
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=99.74 E-value=1.2e-15 Score=140.35 Aligned_cols=192 Identities=16% Similarity=0.098 Sum_probs=136.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHH-----------HHcC-------------ceeccCc
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF-----------ESIG-------------VKVLSDN 65 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l-----------~~~g-------------~~~~~~~ 65 (274)
..||||||+|.||..||..++++|| +|++| |+++++++.. .+.| ++.+++.
T Consensus 7 i~~V~VIGaG~MG~gIA~~la~aG~----~V~l~-D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~ 81 (507)
T PRK08268 7 IATVAVIGAGAMGAGIAQVAAQAGH----TVLLY-DARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEAL 81 (507)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC----eEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCH
Confidence 4689999999999999999999999 99999 9999987763 3345 4666676
Q ss_pred hhhccCCCEEEEeeCcc-cHHH-HHHHhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHhhcCCceEEec
Q 024016 66 NAVVEYSDVVVFSVKPQ-VVKD-VAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSL 142 (274)
Q Consensus 66 ~~~~~~aDiIil~v~~~-~~~~-v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~i~~ 142 (274)
.+ +.+||+||.|++.+ +++. ++.++....++++++.+.+++++++.+++.+. ..+++..|...|.... ....++.
T Consensus 82 ~~-~~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~~la~~~~~p~r~~G~hff~Pa~v~-~LvEvv~ 159 (507)
T PRK08268 82 AD-LADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSITAIAAALKHPERVAGLHFFNPVPLM-KLVEVVS 159 (507)
T ss_pred HH-hCCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEeecCCcccC-eeEEEeC
Confidence 55 56999999999844 4554 45667777788888878889999988887665 2466777766655443 3556677
Q ss_pred CCCCCHHHHHHHHHHhhhcCCe-EEcCccchhhHHHhhcchHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 024016 143 GGTATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYI-FLAIEALADGGVAAGLPRELALGLASQTVL 216 (274)
Q Consensus 143 ~~~~~~~~~~~v~~ll~~~g~~-~~~~e~~~~~~~a~~~~~~~~~-~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~~ 216 (274)
+..++++.++.+.++++.+|+. +++++.. . +. .+.++ ..+.+++. .+.+.|.++++..+++...+.
T Consensus 160 g~~Ts~~~~~~~~~l~~~lgk~pv~v~d~p-G----fi--~Nrll~~~~~Ea~~-l~~~g~~~~~~iD~al~~~~G 227 (507)
T PRK08268 160 GLATDPAVADALYALARAWGKTPVRAKDTP-G----FI--VNRAARPYYTEALR-VLEEGVADPATIDAILREAAG 227 (507)
T ss_pred CCCCCHHHHHHHHHHHHHcCCceEEecCCC-C----hH--HHHHHHHHHHHHHH-HHHcCCCCHHHHHHHHHhcCC
Confidence 7788999999999999999975 6766421 0 00 01111 12222221 134555788888877765443
No 66
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.74 E-value=1.2e-15 Score=130.10 Aligned_cols=155 Identities=19% Similarity=0.280 Sum_probs=121.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc--------------CceeccCchhhccCCCEE
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI--------------GVKVLSDNNAVVEYSDVV 75 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~--------------g~~~~~~~~~~~~~aDiI 75 (274)
++||+|||.|+||+++|.-|.++|| +|.+| .|+++..+++... ++...+|..++++++|+|
T Consensus 1 ~~kI~ViGaGswGTALA~~la~ng~----~V~lw-~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~i 75 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARNGH----EVRLW-GRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADII 75 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhcCC----eeEEE-ecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEE
Confidence 3699999999999999999999999 99999 9999888777651 234567788889999999
Q ss_pred EEeeCcccHHHHHHHhccccCCCCEEEEecCCCCH-------HHHHHhhCCCceE-EEcCCcHHhhcCCce-EEecCCCC
Q 024016 76 VFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKL-------KDLQEWTGHSRFI-RVMPNTPSAVGEAAT-VMSLGGTA 146 (274)
Q Consensus 76 il~v~~~~~~~v~~~i~~~l~~~~~vis~~~g~~~-------~~l~~~~~~~~~~-~~~p~~~~~~~~g~~-~i~~~~~~ 146 (274)
++++|.+.++++++++.+++++++.+|++++|+.. +.+++.++..++. -.-|++..++.+|.. .++.. ..
T Consensus 76 v~avPs~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~~~vLSGPs~A~EVa~g~pta~~va-s~ 154 (329)
T COG0240 76 VIAVPSQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNPIAVLSGPSFAKEVAQGLPTAVVVA-SN 154 (329)
T ss_pred EEECChHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCeEEEEECccHHHHHhcCCCcEEEEe-cC
Confidence 99999999999999998889999999999999864 3455666643333 245888888877753 33322 23
Q ss_pred CHHHHHHHHHHhhhcCCeEEcCcc
Q 024016 147 TEEDGELIGKLFGSVGKIWRADEK 170 (274)
Q Consensus 147 ~~~~~~~v~~ll~~~g~~~~~~e~ 170 (274)
+.+..++++.+|..=...++.+++
T Consensus 155 d~~~a~~v~~~f~~~~Frvy~~~D 178 (329)
T COG0240 155 DQEAAEKVQALFSSPYFRVYTSTD 178 (329)
T ss_pred CHHHHHHHHHHhCCCcEEEEecCc
Confidence 778888899988873334555655
No 67
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.73 E-value=9.3e-16 Score=132.73 Aligned_cols=155 Identities=13% Similarity=0.162 Sum_probs=121.9
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-----------cC---------ceeccCchh
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----------IG---------VKVLSDNNA 67 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-----------~g---------~~~~~~~~~ 67 (274)
+..+||+|||+|.||+.||..++.+|+ +|++| |++++..+.+.+ .| ++..++..+
T Consensus 5 ~~i~~VaVIGaG~MG~giA~~~a~aG~----~V~l~-D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~ 79 (321)
T PRK07066 5 TDIKTFAAIGSGVIGSGWVARALAHGL----DVVAW-DPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEA 79 (321)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCC----eEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHH
Confidence 345789999999999999999999999 99999 999876544321 11 245567778
Q ss_pred hccCCCEEEEeeCcc-cH-HHHHHHhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHhhcCCceEEecCC
Q 024016 68 VVEYSDVVVFSVKPQ-VV-KDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSLGG 144 (274)
Q Consensus 68 ~~~~aDiIil~v~~~-~~-~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~i~~~~ 144 (274)
++++||+|+.|+|.+ ++ .+++.++....++++++-|.++++++..+++.+. ..+++..||..|...-. ..-+++++
T Consensus 80 av~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~~~~~p~R~~g~HffnP~~~~p-LVEVv~g~ 158 (321)
T PRK07066 80 CVADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYARATHPERCVVGHPFNPVYLLP-LVEVLGGE 158 (321)
T ss_pred HhcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHHhcCCcccEEEEecCCccccCc-eEEEeCCC
Confidence 889999999999844 34 4677888888889987778778888899988775 36788889877765433 33456788
Q ss_pred CCCHHHHHHHHHHhhhcCCe-EEcC
Q 024016 145 TATEEDGELIGKLFGSVGKI-WRAD 168 (274)
Q Consensus 145 ~~~~~~~~~v~~ll~~~g~~-~~~~ 168 (274)
.++++.++.+..+++.+|+. +++.
T Consensus 159 ~T~~e~~~~~~~f~~~lGk~pV~v~ 183 (321)
T PRK07066 159 RTAPEAVDAAMGIYRALGMRPLHVR 183 (321)
T ss_pred CCCHHHHHHHHHHHHHcCCEeEecC
Confidence 88999999999999999975 6663
No 68
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.72 E-value=3e-15 Score=131.21 Aligned_cols=154 Identities=13% Similarity=0.208 Sum_probs=108.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc--C------------ceeccCchhhc-cCCCEE
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI--G------------VKVLSDNNAVV-EYSDVV 75 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~--g------------~~~~~~~~~~~-~~aDiI 75 (274)
|||+|||+|+||++++..|.++|+ +|++| +|+++..+.+.+. + +...++..+.+ .++|+|
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~----~V~l~-~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dli 75 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKI----SVNLW-GRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCI 75 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCC----eEEEE-ecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEE
Confidence 589999999999999999999999 99999 9998888777652 1 12334445555 589999
Q ss_pred EEeeCcccHHHHHHHhcc-ccCCCCEEEEecCCCCH-------HHHHHhhCCCceEE-EcCCcHHhhcCC-ceEEecCCC
Q 024016 76 VFSVKPQVVKDVAMQIRP-LLSRKKLLVSVAAGVKL-------KDLQEWTGHSRFIR-VMPNTPSAVGEA-ATVMSLGGT 145 (274)
Q Consensus 76 il~v~~~~~~~v~~~i~~-~l~~~~~vis~~~g~~~-------~~l~~~~~~~~~~~-~~p~~~~~~~~g-~~~i~~~~~ 145 (274)
|+|||+++++++++++.+ .+.+++.++++++|+.. +.+.+.++..++.. .-|+.+.+...+ .+.+... +
T Consensus 76 iiavks~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~~~~~~~~Gp~~a~~~~~~~~~~~~~~-~ 154 (326)
T PRK14620 76 ILAVPTQQLRTICQQLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEILPNNPIAILSGPSFAKEIAEKLPCSIVLA-G 154 (326)
T ss_pred EEEeCHHHHHHHHHHHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHHcCCCceEeecCCcHHHHHHcCCCcEEEEe-c
Confidence 999999999999999998 88888888889999854 45666666444432 235544444333 2222222 1
Q ss_pred CCHHHHHHHHHHhhhcCCeEEcCcc
Q 024016 146 ATEEDGELIGKLFGSVGKIWRADEK 170 (274)
Q Consensus 146 ~~~~~~~~v~~ll~~~g~~~~~~e~ 170 (274)
.+.+..+.+.++|+.-+...+.+++
T Consensus 155 ~~~~~~~~l~~~l~~~~~~~~~~~D 179 (326)
T PRK14620 155 QNETLGSSLISKLSNENLKIIYSQD 179 (326)
T ss_pred CCHHHHHHHHHHHCCCCeEEEecCc
Confidence 2455556677777666655555554
No 69
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=99.72 E-value=1.5e-15 Score=139.43 Aligned_cols=154 Identities=18% Similarity=0.172 Sum_probs=120.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHH-----------HHcC-------------ceeccC
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF-----------ESIG-------------VKVLSD 64 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l-----------~~~g-------------~~~~~~ 64 (274)
+.+||+|||+|.||+.||..+.++|| +|++| ||++++++.. .+.| ++.+++
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~aG~----~V~l~-d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~ 78 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASAGH----QVLLY-DIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTD 78 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhCCC----eEEEE-eCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCC
Confidence 45689999999999999999999999 99999 9999887643 2233 345566
Q ss_pred chhhccCCCEEEEeeCcc-cHH-HHHHHhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHhhcCCceEEe
Q 024016 65 NNAVVEYSDVVVFSVKPQ-VVK-DVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMS 141 (274)
Q Consensus 65 ~~~~~~~aDiIil~v~~~-~~~-~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~i~ 141 (274)
+.+ +.+||+||.|++.+ +++ .++.++....++++++.|.++++++..+.+.+. ..+++..|...|.... ....++
T Consensus 79 ~~~-l~~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~~iA~~~~~p~r~~G~HFf~Papv~-~LvEvv 156 (503)
T TIGR02279 79 LHA-LADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITAIAAGLARPERVAGLHFFNPAPVM-ALVEVV 156 (503)
T ss_pred HHH-hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHhcCcccceEEEeccCccccC-ceEEEe
Confidence 655 56999999999853 444 556777777888888888888999988877765 3467777766655443 356677
Q ss_pred cCCCCCHHHHHHHHHHhhhcCCe-EEcCc
Q 024016 142 LGGTATEEDGELIGKLFGSVGKI-WRADE 169 (274)
Q Consensus 142 ~~~~~~~~~~~~v~~ll~~~g~~-~~~~e 169 (274)
.+..++++.++.+.++++.+|+. +++++
T Consensus 157 ~g~~Ts~e~~~~~~~l~~~lgk~pv~v~d 185 (503)
T TIGR02279 157 SGLATAAEVAEQLYETALAWGKQPVHCHS 185 (503)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCeeeEeCC
Confidence 78888999999999999999986 66654
No 70
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.72 E-value=3e-15 Score=128.46 Aligned_cols=152 Identities=20% Similarity=0.230 Sum_probs=118.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHH-----------HHHcC-------------ceeccCch
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA-----------FESIG-------------VKVLSDNN 66 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~-----------l~~~g-------------~~~~~~~~ 66 (274)
.||+|||+|.||..||..++.+|+ +|++| |++++..+. +.+.| ++.+++.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~----~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~- 79 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV----DVLVF-ETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL- 79 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC----EEEEE-ECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-
Confidence 489999999999999999999999 99999 999988765 33333 2245565
Q ss_pred hhccCCCEEEEeeCcc-cHH-HHHHHhcccc-CCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHhhcCCceEEec
Q 024016 67 AVVEYSDVVVFSVKPQ-VVK-DVAMQIRPLL-SRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSL 142 (274)
Q Consensus 67 ~~~~~aDiIil~v~~~-~~~-~v~~~i~~~l-~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~i~~ 142 (274)
+.+++||+||.|+|.+ .++ .++..+.... +++++++|.++++++..++.... ..+++..|+..|......+ -+.+
T Consensus 80 ~~~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~lv-Elv~ 158 (286)
T PRK07819 80 GDFADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPLV-ELVP 158 (286)
T ss_pred HHhCCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcccCceE-EEeC
Confidence 5689999999999854 344 5556666666 78999999999999998887665 3567888877776554433 4556
Q ss_pred CCCCCHHHHHHHHHHhh-hcCCe-EEcCc
Q 024016 143 GGTATEEDGELIGKLFG-SVGKI-WRADE 169 (274)
Q Consensus 143 ~~~~~~~~~~~v~~ll~-~~g~~-~~~~e 169 (274)
+..++++.++.+.+++. .+|+. +.+.+
T Consensus 159 ~~~T~~~~~~~~~~~~~~~lgk~pv~v~d 187 (286)
T PRK07819 159 TLVTSEATVARAEEFASDVLGKQVVRAQD 187 (286)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCceEecC
Confidence 77889999999999988 59975 66654
No 71
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=99.71 E-value=5.5e-16 Score=139.87 Aligned_cols=189 Identities=17% Similarity=0.214 Sum_probs=128.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-------------------cC-ceeccCchhhcc
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-------------------IG-VKVLSDNNAVVE 70 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-------------------~g-~~~~~~~~~~~~ 70 (274)
|||+|||+|.||.++|..|.++|| +|++| |+++++.+.+.+ .| ++..+++.++++
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~----~V~~~-d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~ 75 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGH----EVTGV-DIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIR 75 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCC----eEEEE-ECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHh
Confidence 589999999999999999999999 99999 999998887663 23 456667777889
Q ss_pred CCCEEEEeeCcc----------cHHHHHHHhccccCCCCEEEEecCCCCH---HHHH-HhhC---CCc-----eEEEcCC
Q 024016 71 YSDVVVFSVKPQ----------VVKDVAMQIRPLLSRKKLLVSVAAGVKL---KDLQ-EWTG---HSR-----FIRVMPN 128 (274)
Q Consensus 71 ~aDiIil~v~~~----------~~~~v~~~i~~~l~~~~~vis~~~g~~~---~~l~-~~~~---~~~-----~~~~~p~ 128 (274)
++|+||+|||.. .+.+++.++.+.++++++||..+ ++++ +.+. ..+. +.. .+...|
T Consensus 76 ~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~S-Tv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~~P- 153 (411)
T TIGR03026 76 DADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLES-TVPPGTTEEVVKPILERASGLKLGEDFYLAYNP- 153 (411)
T ss_pred hCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeC-cCCCCchHHHHHHHHHhhcCCCCCCCceEEECC-
Confidence 999999999844 37788888888888999888653 4432 2332 2221 111 122333
Q ss_pred cHHhhcCCce--------EEecCCCCCHHHHHHHHHHhhhcC-C-eEEcCccchhhHHHhhcchHHHHHHHHHHHHHH--
Q 024016 129 TPSAVGEAAT--------VMSLGGTATEEDGELIGKLFGSVG-K-IWRADEKLFDAITGLSGSGPAYIFLAIEALADG-- 196 (274)
Q Consensus 129 ~~~~~~~g~~--------~i~~~~~~~~~~~~~v~~ll~~~g-~-~~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~-- 196 (274)
.....|.. .++.| .+++..++++++++.++ . .++++...-..++.+. .+.|.+..+..+.|.
T Consensus 154 --e~~~~G~~~~~~~~~~~iv~G--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~--~N~~~a~~ia~~nE~~~ 227 (411)
T TIGR03026 154 --EFLREGNAVHDLLNPDRIVGG--ETEEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLA--ENTFRAVKIAFANELAR 227 (411)
T ss_pred --CcCCCCChhhhhcCCCEEEEe--CCHHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 22233321 33334 37899999999999997 3 4666544333444443 245544444444444
Q ss_pred -HHHcCCCHHHHHHHHH
Q 024016 197 -GVAAGLPRELALGLAS 212 (274)
Q Consensus 197 -~~~~Gl~~~~~~~~~~ 212 (274)
+.+.|+|.++..+++.
T Consensus 228 la~~~GiD~~~v~~~~~ 244 (411)
T TIGR03026 228 ICEALGIDVYEVIEAAG 244 (411)
T ss_pred HHHHhCCCHHHHHHHhC
Confidence 5689999998877654
No 72
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.71 E-value=1.2e-14 Score=116.93 Aligned_cols=220 Identities=16% Similarity=0.204 Sum_probs=147.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhcc---CCCEEEEeeCcc-cHHH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVE---YSDVVVFSVKPQ-VVKD 86 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~---~aDiIil~v~~~-~~~~ 86 (274)
|+||.||+|+||..|+++|++.|| +|++| |++++..+.++..|++.++++.+.++ ...+|.++||.. .+..
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~gh----dvV~y-D~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~ 75 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGH----DVVGY-DVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDA 75 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCC----eEEEE-cCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHH
Confidence 689999999999999999999999 99999 99999999999989887777766644 568999999977 6789
Q ss_pred HHHHhccccCCCCEEEEecCCCCHHHHHH--hhC--CCceEEEcCC-cHHhhcCCceEEecCCCCCHHHHHHHHHHhhhc
Q 024016 87 VAMQIRPLLSRKKLLVSVAAGVKLKDLQE--WTG--HSRFIRVMPN-TPSAVGEAATVMSLGGTATEEDGELIGKLFGSV 161 (274)
Q Consensus 87 v~~~i~~~l~~~~~vis~~~g~~~~~l~~--~~~--~~~~~~~~p~-~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~ 161 (274)
+++++.+.+.+|.+||+--++.--+.+++ .+. +..++.+-.+ .+.-...|.+.+..| +.+.++.++++|+.+
T Consensus 76 vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSGG~~G~~~G~~lMiGG---~~~a~~~~~pif~~l 152 (300)
T COG1023 76 VIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSGGVWGAERGYCLMIGG---DEEAVERLEPIFKAL 152 (300)
T ss_pred HHHHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEEeccCCCCchhhhcCceEEecC---cHHHHHHHHHHHHhh
Confidence 99999999999999998544432333332 122 3455554332 233345677777766 689999999999987
Q ss_pred CC--e--EEcCccchhhHHHhhcchHHHHHHHHHHHHHHH---HHcCCC--HHHHHHH------HHHHHHHHHHHHHhcC
Q 024016 162 GK--I--WRADEKLFDAITGLSGSGPAYIFLAIEALADGG---VAAGLP--RELALGL------ASQTVLGAASMVTKSG 226 (274)
Q Consensus 162 g~--~--~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~~---~~~Gl~--~~~~~~~------~~~~~~~~~~~~~~~~ 226 (274)
.. . .++++..-..+..+...+ .=+.++++++|.. ++..+| .++..++ +..-+.+...-+.+.+
T Consensus 153 A~ge~Gyl~~Gp~GsGHfvKMVHNG--IEYGmM~a~aEGfelL~~s~fD~D~~~VA~vW~hGSVIrSWLldLt~~Af~~d 230 (300)
T COG1023 153 APGEDGYLYCGPSGSGHFVKMVHNG--IEYGMMQAIAEGFELLKNSPFDYDLEAVAEVWNHGSVIRSWLLDLTAEAFKKD 230 (300)
T ss_pred CcCcCccccccCCCcchhHHHHhcc--HHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCcchHHHHHHHHHHHHHhhC
Confidence 63 2 456664333333333322 2234566776653 344444 3332222 2222222222222334
Q ss_pred CChHHHHHhcCCCC
Q 024016 227 KHPGQLKDDVASPG 240 (274)
Q Consensus 227 ~~~~~~~~~~~~~~ 240 (274)
.+.+++...+.+.|
T Consensus 231 ~~L~q~~g~v~dSG 244 (300)
T COG1023 231 PDLDQISGRVSDSG 244 (300)
T ss_pred CCHHHhcCeeccCC
Confidence 46777777776654
No 73
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=99.70 E-value=1.1e-15 Score=137.71 Aligned_cols=192 Identities=15% Similarity=0.116 Sum_probs=122.9
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-------------------cCceeccCchhh
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-------------------IGVKVLSDNNAV 68 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-------------------~g~~~~~~~~~~ 68 (274)
|.++||+|||+|.||.+||.+|.++|| +|++| |+++++.+.+.. .|....++ .
T Consensus 1 m~~~kI~VIGlG~~G~~~A~~La~~G~----~V~~~-D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~---~ 72 (415)
T PRK11064 1 MSFETISVIGLGYIGLPTAAAFASRQK----QVIGV-DINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATT---T 72 (415)
T ss_pred CCccEEEEECcchhhHHHHHHHHhCCC----EEEEE-eCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeec---c
Confidence 346899999999999999999999999 99999 999999887542 12111111 1
Q ss_pred ccCCCEEEEeeCc----------ccHHHHHHHhccccCCCCEEEEecCCCC---HHHHHHhhCC--C----c--------
Q 024016 69 VEYSDVVVFSVKP----------QVVKDVAMQIRPLLSRKKLLVSVAAGVK---LKDLQEWTGH--S----R-------- 121 (274)
Q Consensus 69 ~~~aDiIil~v~~----------~~~~~v~~~i~~~l~~~~~vis~~~g~~---~~~l~~~~~~--~----~-------- 121 (274)
.++||+||+|||. ..+.++++++.+++++|++||..+ +++ .+.+...+.. . +
T Consensus 73 ~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~S-Tv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~ 151 (415)
T PRK11064 73 PEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILES-TSPVGATEQMAEWLAEARPDLTFPQQAGEQAD 151 (415)
T ss_pred cccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeC-CCCCCHHHHHHHHHHHhccCCcccccccCCCC
Confidence 3489999999985 467788888999999999888553 333 3344332210 0 1
Q ss_pred -eEEEcC-----CcHHhhcCCceEEecCCCCCHHHHHHHHHHhhhcCCe-EEcCccchhhHHHhhcchHHHHHHHHHHHH
Q 024016 122 -FIRVMP-----NTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALA 194 (274)
Q Consensus 122 -~~~~~p-----~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~g~~-~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~ 194 (274)
.+-..| ........-...++.+ .+++..++++++++.++.. ++++......++.+.. +.|.+..+..+.
T Consensus 152 f~v~~~PE~~~~G~~~~~~~~~~~vvgG--~~~~~~~~~~~ly~~~~~~~~~~~~~~~Ae~~Kl~~--N~~~a~~ia~~n 227 (415)
T PRK11064 152 INIAYCPERVLPGQVMVELIKNDRVIGG--MTPVCSARASELYKIFLEGECVVTNSRTAEMCKLTE--NSFRDVNIAFAN 227 (415)
T ss_pred eEEEECCCccCCCChhhhhcCCCEEEEe--CCHHHHHHHHHHHHHhcCCCeeeCCHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 011223 1111111112234433 2688899999999999864 5655443344444432 455544444444
Q ss_pred HH---HHHcCCCHHHHHHHHH
Q 024016 195 DG---GVAAGLPRELALGLAS 212 (274)
Q Consensus 195 e~---~~~~Gl~~~~~~~~~~ 212 (274)
|. +.+.|+|.++..+.+.
T Consensus 228 E~~~lae~~GiD~~~v~~~~~ 248 (415)
T PRK11064 228 ELSLICADQGINVWELIRLAN 248 (415)
T ss_pred HHHHHHHHhCCCHHHHHHHhc
Confidence 43 5689999988776554
No 74
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=99.70 E-value=2.2e-15 Score=132.84 Aligned_cols=147 Identities=16% Similarity=0.188 Sum_probs=104.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCcee-----------------ccCchhhccCC
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-----------------LSDNNAVVEYS 72 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~-----------------~~~~~~~~~~a 72 (274)
+|||+|||+|.||+.++..|.++|+ +|++| +|++. .+.+.+.|..+ .++. +.+.++
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~G~----~V~~~-~r~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 74 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAAGA----DVTLI-GRARI-GDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATA 74 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCC----cEEEE-ecHHH-HHHHHhcCceeecCCCcceecccceeEeccCh-hhccCC
Confidence 4789999999999999999999999 99999 98753 45565545432 2233 556789
Q ss_pred CEEEEeeCcccHHHHHHHhccccCCCCEEEEecCCCCH-HHHHHhhCCCceEEE-c--------CCcHHhhcCCceEEec
Q 024016 73 DVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKL-KDLQEWTGHSRFIRV-M--------PNTPSAVGEAATVMSL 142 (274)
Q Consensus 73 DiIil~v~~~~~~~v~~~i~~~l~~~~~vis~~~g~~~-~~l~~~~~~~~~~~~-~--------p~~~~~~~~g~~~i~~ 142 (274)
|+||+|||+.+..++++.+.+.++++++|+++++|+.. +.+++.++...++.. . |........|...+
T Consensus 75 D~vil~vk~~~~~~~~~~l~~~~~~~~iii~~~nG~~~~~~l~~~~~~~~~~~g~~~~~~~~~~pg~~~~~~~g~l~~-- 152 (341)
T PRK08229 75 DLVLVTVKSAATADAAAALAGHARPGAVVVSFQNGVRNADVLRAALPGATVLAGMVPFNVISRGPGAFHQGTSGALAI-- 152 (341)
T ss_pred CEEEEEecCcchHHHHHHHHhhCCCCCEEEEeCCCCCcHHHHHHhCCCCcEEEEEEEEEEEecCCceEEecCCCceEe--
Confidence 99999999999999999999888899999999999874 667777764333322 1 11111122333322
Q ss_pred CCCCCHHHHHHHHHHhhhcCCe-EEcC
Q 024016 143 GGTATEEDGELIGKLFGSVGKI-WRAD 168 (274)
Q Consensus 143 ~~~~~~~~~~~v~~ll~~~g~~-~~~~ 168 (274)
+. .+.++.+.++|+..|.. .+.+
T Consensus 153 ~~---~~~~~~~~~~l~~~g~~~~~~~ 176 (341)
T PRK08229 153 EA---SPALRPFAAAFARAGLPLVTHE 176 (341)
T ss_pred cC---CchHHHHHHHHHhcCCCceecc
Confidence 21 24568899999998854 4433
No 75
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=99.68 E-value=2.9e-14 Score=124.21 Aligned_cols=170 Identities=15% Similarity=0.153 Sum_probs=116.2
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceec-------------cCchhhccCCCE
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-------------SDNNAVVEYSDV 74 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~-------------~~~~~~~~~aDi 74 (274)
++.|||+|||+|.||+.+|..|.++|+ +|+++ .|++. +.+.+.|+... .+..+....+|+
T Consensus 3 ~~~m~I~IiG~GaiG~~lA~~L~~~g~----~V~~~-~r~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 75 (313)
T PRK06249 3 SETPRIGIIGTGAIGGFYGAMLARAGF----DVHFL-LRSDY--EAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDW 75 (313)
T ss_pred CcCcEEEEECCCHHHHHHHHHHHHCCC----eEEEE-EeCCH--HHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCE
Confidence 456899999999999999999999999 99999 88763 34444443321 112234567999
Q ss_pred EEEeeCcccHHHHHHHhccccCCCCEEEEecCCCCH-HHHHHhhCCCceEEEcC------CcHH---hhcCCceEEecCC
Q 024016 75 VVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKL-KDLQEWTGHSRFIRVMP------NTPS---AVGEAATVMSLGG 144 (274)
Q Consensus 75 Iil~v~~~~~~~v~~~i~~~l~~~~~vis~~~g~~~-~~l~~~~~~~~~~~~~p------~~~~---~~~~g~~~i~~~~ 144 (274)
||+|||..++.++++.+.+.+.+++.++++.+|+.. +.+++.++..+++.... ..|. +.+.|.+.+....
T Consensus 76 vilavK~~~~~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l~~~~~~~~v~~g~~~~~a~~~~pg~v~~~~~g~~~iG~~~ 155 (313)
T PRK06249 76 VLVGLKTTANALLAPLIPQVAAPDAKVLLLQNGLGVEEQLREILPAEHLLGGLCFICSNRVGPGVIHHLAYGRVNLGYHS 155 (313)
T ss_pred EEEEecCCChHhHHHHHhhhcCCCCEEEEecCCCCcHHHHHHHCCCCcEEEEeeeEeEecCCCeEEEECCCCcEEEecCC
Confidence 999999999999999999888888999999999985 56777777555554321 1222 1123333332212
Q ss_pred CCC-----HHHHHHHHHHhhhcCCeEEcCcc-------------chhhHHHhhcchHH
Q 024016 145 TAT-----EEDGELIGKLFGSVGKIWRADEK-------------LFDAITGLSGSGPA 184 (274)
Q Consensus 145 ~~~-----~~~~~~v~~ll~~~g~~~~~~e~-------------~~~~~~a~~~~~~~ 184 (274)
..+ .+..+.+..+|+..|..+...++ .++.++++.++...
T Consensus 156 ~~~~~~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~n~ltal~~~~~g 213 (313)
T PRK06249 156 GPAADDGITARVEEGAALFRAAGIDSQAMPDLAQARWQKLVWNIPYNGLSVLLNASTD 213 (313)
T ss_pred CCcccchHHHHHHHHHHHHHhCCCCceeCchHHHHHHhHhheecchhHHHHHhCCChH
Confidence 112 35566788888888865444443 35677888776443
No 76
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=99.67 E-value=2e-14 Score=122.50 Aligned_cols=207 Identities=17% Similarity=0.173 Sum_probs=141.9
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccHHHH
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDV 87 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v 87 (274)
.+.++|||||+|+||.++|++|...|+ +|++| +|.....+.....|.... +..++++.||+|++++|+...+.+
T Consensus 14 LkgKtVGIIG~GsIG~amA~nL~d~G~----~ViV~-~r~~~s~~~A~~~G~~v~-sl~Eaak~ADVV~llLPd~~t~~V 87 (335)
T PRK13403 14 LQGKTVAVIGYGSQGHAQAQNLRDSGV----EVVVG-VRPGKSFEVAKADGFEVM-SVSEAVRTAQVVQMLLPDEQQAHV 87 (335)
T ss_pred hCcCEEEEEeEcHHHHHHHHHHHHCcC----EEEEE-ECcchhhHHHHHcCCEEC-CHHHHHhcCCEEEEeCCChHHHHH
Confidence 356899999999999999999999999 99999 776555455555687764 789999999999999997666788
Q ss_pred HH-HhccccCCCCEEEEecCCCCHHHHHHhhC--CCceEEEcCCcHHh-------hcCCceEEe-cCCCCCHHHHHHHHH
Q 024016 88 AM-QIRPLLSRKKLLVSVAAGVKLKDLQEWTG--HSRFIRVMPNTPSA-------VGEAATVMS-LGGTATEEDGELIGK 156 (274)
Q Consensus 88 ~~-~i~~~l~~~~~vis~~~g~~~~~l~~~~~--~~~~~~~~p~~~~~-------~~~g~~~i~-~~~~~~~~~~~~v~~ 156 (274)
+. ++.+.+++|++++ .+.|..+..- ...| +..++-+-|..|.+ .+.|+..++ ...+.+-.+.+....
T Consensus 88 ~~~eil~~MK~GaiL~-f~hgfni~~~-~i~pp~~vdv~mvaPKgpG~~vR~~y~~G~Gvp~l~av~qd~sg~a~~~ala 165 (335)
T PRK13403 88 YKAEVEENLREGQMLL-FSHGFNIHFG-QINPPSYVDVAMVAPKSPGHLVRRVFQEGNGVPALVAVHQDATGTALHVALA 165 (335)
T ss_pred HHHHHHhcCCCCCEEE-ECCCcceecC-ceeCCCCCeEEEECCCCCChHHHHHHHcCCCceeEEEEEECCCCcHHHHHHH
Confidence 74 6888899998666 5567665321 2333 46677777776643 256665443 233445567888888
Q ss_pred HhhhcCCe---EE-c---Cc---cchhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcC
Q 024016 157 LFGSVGKI---WR-A---DE---KLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSG 226 (274)
Q Consensus 157 ll~~~g~~---~~-~---~e---~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~ 226 (274)
+...+|.. +. . .| +.+..-..++|.. ..++.+-.|.++++|.+++.|+--...-++-...++.+.|
T Consensus 166 ~a~~iG~~ragv~~ttf~~EtetDlfgEq~vL~Gg~----~~li~~gfe~lveaGy~pe~Ayfe~~he~kli~dli~e~G 241 (335)
T PRK13403 166 YAKGVGCTRAGVIETTFQEETETDLFGEQAVLCGGV----TALVKAGFETLTEGGYRPEIAYFECLHELKLIVDLMYEGG 241 (335)
T ss_pred HHHHcCCCceeEEecchHHHHhhhhcccchhhHHHH----HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHcc
Confidence 88998843 22 1 12 2333444555533 3445666677889999999887544444455555554433
No 77
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=99.66 E-value=3e-15 Score=119.52 Aligned_cols=151 Identities=21% Similarity=0.334 Sum_probs=112.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-HHHHHHHH-cCce-eccCchhhccCCCEEEEeeCcccHHH
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-KRRDAFES-IGVK-VLSDNNAVVEYSDVVVFSVKPQVVKD 86 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~-~~~~~l~~-~g~~-~~~~~~~~~~~aDiIil~v~~~~~~~ 86 (274)
+|+|+|+|.|+||++++++|.++|| +|.+- +|+. ++.+.+.+ .+.. ...++.++++.+|+||++||-..+.+
T Consensus 1 m~~~~i~GtGniG~alA~~~a~ag~----eV~ig-s~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~a~~~ 75 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKAGH----EVIIG-SSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFEAIPD 75 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhCCC----eEEEe-cCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHHHHHh
Confidence 4799999999999999999999999 99888 5544 44444444 3332 23567888999999999999999999
Q ss_pred HHHHhccccCCCCEEEEecCCCC-----------------HHHHHHhhCCCceEEEcCCcHHhh-----c--CCceEEec
Q 024016 87 VAMQIRPLLSRKKLLVSVAAGVK-----------------LKDLQEWTGHSRFIRVMPNTPSAV-----G--EAATVMSL 142 (274)
Q Consensus 87 v~~~i~~~l~~~~~vis~~~g~~-----------------~~~l~~~~~~~~~~~~~p~~~~~~-----~--~g~~~i~~ 142 (274)
++.++...+. |++||+.++++. .+.+++.+|+.++++.+.+.+... . ....++++
T Consensus 76 v~~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~akVVkAFn~i~a~~l~~~~~~~~~~~v~va 154 (211)
T COG2085 76 VLAELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGAKVVKAFNTIPAAVLADLAKPGGRRDVLVA 154 (211)
T ss_pred HHHHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCcchhhhhcccCHHHhccCCCcCCceeEEEe
Confidence 9999998774 899999888631 245677778777887665544322 1 12234455
Q ss_pred CCCCCHHHHHHHHHHhhhcCCe-EEcC
Q 024016 143 GGTATEEDGELIGKLFGSVGKI-WRAD 168 (274)
Q Consensus 143 ~~~~~~~~~~~v~~ll~~~g~~-~~~~ 168 (274)
++ |.++.+.+.++.+.+|.. +..+
T Consensus 155 gD--D~~Ak~~v~~L~~~iG~~~ld~G 179 (211)
T COG2085 155 GD--DAEAKAVVAELAEDIGFRPLDAG 179 (211)
T ss_pred cC--cHHHHHHHHHHHHhcCcceeecc
Confidence 53 688999999999999954 6655
No 78
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=99.66 E-value=7.1e-14 Score=121.37 Aligned_cols=154 Identities=15% Similarity=0.277 Sum_probs=107.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCcee-------------ccCchhhccCCCEEEE
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-------------LSDNNAVVEYSDVVVF 77 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~-------------~~~~~~~~~~aDiIil 77 (274)
|||+|||+|.||..++..|.++|+ +|++| +| +++.+.+.+.|..+ .++..+..+.+|+||+
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~----~V~~~-~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vil 74 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGR----DVTFL-VR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVIL 74 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCC----ceEEE-ec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEE
Confidence 589999999999999999999999 99999 99 77887777655432 2334455578999999
Q ss_pred eeCcccHHHHHHHhccccCCCCEEEEecCCCC-HHHHHHhhCCCceEEE---cCC---cHHhh---cCCceEEecCCCCC
Q 024016 78 SVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVK-LKDLQEWTGHSRFIRV---MPN---TPSAV---GEAATVMSLGGTAT 147 (274)
Q Consensus 78 ~v~~~~~~~v~~~i~~~l~~~~~vis~~~g~~-~~~l~~~~~~~~~~~~---~p~---~~~~~---~~g~~~i~~~~~~~ 147 (274)
|+|+.+++++++++.+.+.++++||++.+|+. .+.+.+.++..+++.. ++. .|..+ +.+...+...+...
T Consensus 75 avk~~~~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~l~~~~~~~~v~~g~~~~~~~~~~~g~v~~~~~~~~~iG~~~~~~ 154 (305)
T PRK12921 75 AVKAYQLDAAIPDLKPLVGEDTVIIPLQNGIGQLEQLEPYFGRERVLGGVVFISAQLNGDGVVVQRADHRLTFGEIPGQR 154 (305)
T ss_pred EecccCHHHHHHHHHhhcCCCCEEEEeeCCCChHHHHHHhCCcccEEEEEEEEEEEECCCeEEEEcCCCcEEEcCCCCCc
Confidence 99999999999999988888889999999987 4667777764344332 111 12111 11222221112223
Q ss_pred HHHHHHHHHHhhhcCCeEEcCcc
Q 024016 148 EEDGELIGKLFGSVGKIWRADEK 170 (274)
Q Consensus 148 ~~~~~~v~~ll~~~g~~~~~~e~ 170 (274)
.+..+.+.++|...|..+...++
T Consensus 155 ~~~~~~l~~~l~~~g~~~~~~~d 177 (305)
T PRK12921 155 SERTRAVRDALAGARLEVVLSEN 177 (305)
T ss_pred CHHHHHHHHHHHhCCCCceecHH
Confidence 45666788888887855444443
No 79
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.66 E-value=3.5e-14 Score=124.89 Aligned_cols=155 Identities=18% Similarity=0.231 Sum_probs=113.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCC-------CCCCCcEEEEeCCCHH-----HHHHHHHc--------------Cceec
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSG-------VLPPDRICTAVHSNLK-----RRDAFESI--------------GVKVL 62 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g-------~~~~~~v~v~~~r~~~-----~~~~l~~~--------------g~~~~ 62 (274)
+.+||+|||+|+||+++|..|.++| + +|.+| .|+++ ..+.+.+. ++.+.
T Consensus 10 ~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~----~V~lw-~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~t 84 (365)
T PTZ00345 10 GPLKVSVIGSGNWGSAISKVVGENTQRNYIFHN----EVRMW-VLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAV 84 (365)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCcccCCCC----eEEEE-EecccccchHHHHHHHhcCCCcccCCCCcCCCceEEe
Confidence 3579999999999999999999987 6 89999 88875 24555431 23456
Q ss_pred cCchhhccCCCEEEEeeCcccHHHHHHHhcc--ccCCCCEEEEecCCCCHH---------HHHHhhCCCceE-EEcCCcH
Q 024016 63 SDNNAVVEYSDVVVFSVKPQVVKDVAMQIRP--LLSRKKLLVSVAAGVKLK---------DLQEWTGHSRFI-RVMPNTP 130 (274)
Q Consensus 63 ~~~~~~~~~aDiIil~v~~~~~~~v~~~i~~--~l~~~~~vis~~~g~~~~---------~l~~~~~~~~~~-~~~p~~~ 130 (274)
+|..++++++|+|+++||++.++++++++.+ .+++++++||+++|+..+ .+++.++ .++. -.-|+++
T Consensus 85 sdl~eav~~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~-~~~~~LsGPs~A 163 (365)
T PTZ00345 85 SDLKEAVEDADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELG-IPCCALSGANVA 163 (365)
T ss_pred cCHHHHHhcCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhC-CCeEEEECCCHH
Confidence 6777889999999999999999999999998 777777999999988643 2344444 2433 3458888
Q ss_pred HhhcCCc-eEEecCCCCCHHHHHHHHHHhhhcCCeEEcCcc
Q 024016 131 SAVGEAA-TVMSLGGTATEEDGELIGKLFGSVGKIWRADEK 170 (274)
Q Consensus 131 ~~~~~g~-~~i~~~~~~~~~~~~~v~~ll~~~g~~~~~~e~ 170 (274)
.++..|. +.++.+ +.+.+..+.++++|+.-...++.+++
T Consensus 164 ~Eva~~~pt~~via-s~~~~~a~~~~~lf~~~~frvy~s~D 203 (365)
T PTZ00345 164 NDVAREEFSEATIG-CEDKDDALIWQRLFDRPYFKINCVPD 203 (365)
T ss_pred HHHHcCCCcEEEEE-eCCHHHHHHHHHHhCCCcEEEEEcCC
Confidence 8887664 333322 23678888889998764434555544
No 80
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=99.66 E-value=1.6e-15 Score=118.94 Aligned_cols=121 Identities=19% Similarity=0.335 Sum_probs=93.8
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc--------------CceeccCchhhccCCCEEEE
Q 024016 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI--------------GVKVLSDNNAVVEYSDVVVF 77 (274)
Q Consensus 12 ~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~--------------g~~~~~~~~~~~~~aDiIil 77 (274)
||+|||+|+||.++|..|.++|+ +|++| .|+++..+.+.+. .+.+++|.+++++++|+|++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~----~V~l~-~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~Iii 75 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGH----EVTLW-GRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIII 75 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTE----EEEEE-TSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHcCC----EEEEE-eccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEe
Confidence 79999999999999999999999 99999 9999988888761 23456778889999999999
Q ss_pred eeCcccHHHHHHHhccccCCCCEEEEecCCCC-------HHHHHHhhCCCceE-EEcCCcHHhhcCCc
Q 024016 78 SVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVK-------LKDLQEWTGHSRFI-RVMPNTPSAVGEAA 137 (274)
Q Consensus 78 ~v~~~~~~~v~~~i~~~l~~~~~vis~~~g~~-------~~~l~~~~~~~~~~-~~~p~~~~~~~~g~ 137 (274)
++|.+.++++++++.+++++++.+|++++|+. .+.+++.++..++. -.-|+.+.++..+.
T Consensus 76 avPs~~~~~~~~~l~~~l~~~~~ii~~~KG~~~~~~~~~~~~i~~~~~~~~~~~lsGP~~A~Ei~~~~ 143 (157)
T PF01210_consen 76 AVPSQAHREVLEQLAPYLKKGQIIISATKGFEPGTLLLLSEVIEEILPIPRIAVLSGPSFAEEIAEGK 143 (157)
T ss_dssp -S-GGGHHHHHHHHTTTSHTT-EEEETS-SEETTEEEEHHHHHHHHHSSCGEEEEESS--HHHHHTT-
T ss_pred cccHHHHHHHHHHHhhccCCCCEEEEecCCcccCCCccHHHHHHHHhhhcceEEeeCccHHHHHHcCC
Confidence 99999999999999999999999999998873 24566667743333 23588887776663
No 81
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=99.66 E-value=4.3e-15 Score=118.90 Aligned_cols=149 Identities=17% Similarity=0.248 Sum_probs=108.8
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH------------------------cCceeccCchh
Q 024016 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES------------------------IGVKVLSDNNA 67 (274)
Q Consensus 12 ~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~------------------------~g~~~~~~~~~ 67 (274)
||+|||+|.||..||..++.+|+ +|++| |++++..+...+ ..++..++..+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~----~V~l~-d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~ 75 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY----EVTLY-DRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEE 75 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS----EEEEE--SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGG
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC----cEEEE-ECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHH
Confidence 79999999999999999999999 99999 999987543321 12455677777
Q ss_pred hccCCCEEEEeeCcc--cHHHHHHHhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHhhcCCceEEecCC
Q 024016 68 VVEYSDVVVFSVKPQ--VVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSLGG 144 (274)
Q Consensus 68 ~~~~aDiIil~v~~~--~~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~i~~~~ 144 (274)
+. +||+||-|+|.+ .-++++.++....++++++.|.+++++++.+.+.++ ..+++..|+..|..... ..-+++++
T Consensus 76 ~~-~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~~~p~R~ig~Hf~~P~~~~~-lVEvv~~~ 153 (180)
T PF02737_consen 76 AV-DADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISELAAALSRPERFIGMHFFNPPHLMP-LVEVVPGP 153 (180)
T ss_dssp GC-TESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHTTSSTGGGEEEEEE-SSTTT---EEEEEE-T
T ss_pred Hh-hhheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHhccCcCceEEEEecccccccCc-eEEEeCCC
Confidence 66 999999999743 356788999999999999999999999999988776 35788888776665322 33356678
Q ss_pred CCCHHHHHHHHHHhhhcCCe-EEc
Q 024016 145 TATEEDGELIGKLFGSVGKI-WRA 167 (274)
Q Consensus 145 ~~~~~~~~~v~~ll~~~g~~-~~~ 167 (274)
..+++.++.+..+++.+|+. +.+
T Consensus 154 ~T~~~~~~~~~~~~~~~gk~pv~v 177 (180)
T PF02737_consen 154 KTSPETVDRVRALLRSLGKTPVVV 177 (180)
T ss_dssp TS-HHHHHHHHHHHHHTT-EEEEE
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEe
Confidence 88999999999999999975 544
No 82
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=99.64 E-value=6.4e-14 Score=122.45 Aligned_cols=153 Identities=15% Similarity=0.159 Sum_probs=111.0
Q ss_pred eEEEEcccHHHHHHHHHHHhCC--------CCCCCcEEEEeCC-----CHHHHHHHHH--------cC------ceeccC
Q 024016 12 ILGFIGAGKMAESIAKGVAKSG--------VLPPDRICTAVHS-----NLKRRDAFES--------IG------VKVLSD 64 (274)
Q Consensus 12 ~IgiIG~G~mG~~~a~~L~~~g--------~~~~~~v~v~~~r-----~~~~~~~l~~--------~g------~~~~~~ 64 (274)
||+|||+|+||+++|..|.++| + +|.+| .| +++-.+.+.+ .| +++.+|
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~----~V~lw-~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~d 75 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEE----SVRMW-VFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPD 75 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCc----eEEEE-EeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECC
Confidence 6999999999999999999999 7 99999 88 4444444432 12 345567
Q ss_pred chhhccCCCEEEEeeCcccHHHHHHHhccccCCCCEEEEecCCCCHH---------HHHHhhCCCceE-EEcCCcHHhhc
Q 024016 65 NNAVVEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLK---------DLQEWTGHSRFI-RVMPNTPSAVG 134 (274)
Q Consensus 65 ~~~~~~~aDiIil~v~~~~~~~v~~~i~~~l~~~~~vis~~~g~~~~---------~l~~~~~~~~~~-~~~p~~~~~~~ 134 (274)
..++++++|+||++||++.+++++.++.+++++++++|++++|+..+ .+++.++ .++. -.-|+.+.++.
T Consensus 76 l~eal~~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l~-~~~~~lsGP~~A~Eva 154 (342)
T TIGR03376 76 LVEAAKGADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEELG-IPCGVLSGANLANEVA 154 (342)
T ss_pred HHHHHhcCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHhC-CCeEEeeCcchHHHHH
Confidence 78889999999999999999999999999998899999999998755 2344443 3443 34588888887
Q ss_pred CCc-eEEe-cCCCCC--HHHHHHHHHHhhhcCCeEEcCcc
Q 024016 135 EAA-TVMS-LGGTAT--EEDGELIGKLFGSVGKIWRADEK 170 (274)
Q Consensus 135 ~g~-~~i~-~~~~~~--~~~~~~v~~ll~~~g~~~~~~e~ 170 (274)
+|. +.++ ...+.+ .+..+.++++|+.=...++.+.+
T Consensus 155 ~~~pt~~~ia~~~~~~~~~~a~~~~~lf~~~~frv~~s~D 194 (342)
T TIGR03376 155 KEKFSETTVGYRDPADFDVDARVLKALFHRPYFRVNVVDD 194 (342)
T ss_pred cCCCceEEEEeCCCcchHHHHHHHHHHhCCCCEEEEEcCC
Confidence 765 2222 222111 67788888888754333444444
No 83
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=99.62 E-value=3.3e-13 Score=116.62 Aligned_cols=248 Identities=15% Similarity=0.201 Sum_probs=152.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceecc------------CchhhccCCCEEEEe
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLS------------DNNAVVEYSDVVVFS 78 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~------------~~~~~~~~aDiIil~ 78 (274)
|||.|+|+|.||+.++..|.++|+ +|+++ .|++. .+.+++.|+.+.. +..+....+|+||++
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~----~V~~~-~R~~~-~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~ 74 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGH----DVTLL-VRSRR-LEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVT 74 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCC----eEEEE-ecHHH-HHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEE
Confidence 699999999999999999999998 99999 88765 7888876654321 223445689999999
Q ss_pred eCcccHHHHHHHhccccCCCCEEEEecCCCCHH-HHHHhhCCCceEEE-cC--------CcHHhhcCCceEEecCCCCCH
Q 024016 79 VKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLK-DLQEWTGHSRFIRV-MP--------NTPSAVGEAATVMSLGGTATE 148 (274)
Q Consensus 79 v~~~~~~~v~~~i~~~l~~~~~vis~~~g~~~~-~l~~~~~~~~~~~~-~p--------~~~~~~~~g~~~i~~~~~~~~ 148 (274)
||..+..++++.+.+.+++++.|+.+.+|+... .+.+..+...++.. .+ ....+.+.|.+.+..-....+
T Consensus 75 vKa~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e~l~~~~~~~~il~G~~~~~a~~~~~g~v~~~g~g~~~ig~~~~~~~ 154 (307)
T COG1893 75 VKAYQLEEALPSLAPLLGPNTVVLFLQNGLGHEEELRKILPKETVLGGVTTHGAVREGPGHVVHTGLGDTVIGELRGGRD 154 (307)
T ss_pred eccccHHHHHHHhhhcCCCCcEEEEEeCCCcHHHHHHHhCCcceEEEEEeeeeeEecCCceEEEecCCcEEEccCCCCch
Confidence 999999999999999999999999999999864 46666664333322 11 111222334444433223344
Q ss_pred HHHHHHHHHhhhcCCeEEcCcc-------------chhhHHHhhcchHHH-------HHHHHHHHHH---HHHHcCCCHH
Q 024016 149 EDGELIGKLFGSVGKIWRADEK-------------LFDAITGLSGSGPAY-------IFLAIEALAD---GGVAAGLPRE 205 (274)
Q Consensus 149 ~~~~~v~~ll~~~g~~~~~~e~-------------~~~~~~a~~~~~~~~-------~~~~~~~l~e---~~~~~Gl~~~ 205 (274)
+..+.+.++|+..|...++.++ .++.++++..|-+.- ...+...+.| .+.+.|+..+
T Consensus 155 ~~~~~i~~~~~~a~~~~~~~~di~~~~w~Kl~~N~~inpltall~~~~g~l~~~~~~~~l~~~~~~E~~~v~~~~g~~~~ 234 (307)
T COG1893 155 ELVKALAELFKEAGLEVELHPDILAAIWRKLVVNAAINPLTALLDCNNGELLENPEARALIRALVAEVVAVARAEGVELP 234 (307)
T ss_pred HHHHHHHHHHHhCCCCeEEcHHHHHHHHHHHHhhhccchhhhhhcCCchHHhcChhHHHHHHHHHHHHHHHHHhccCCCC
Confidence 7788888889888866554443 356667666654332 1112222222 2346774322
Q ss_pred -HHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHHHH-----HHHHHhCCHHHHHHHHHHHHHHHH
Q 024016 206 -LALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAG-----IHELEKSGFRGILMNAVVAAAKRS 270 (274)
Q Consensus 206 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~-----l~~l~~~~~~~~~~~a~~~~~~r~ 270 (274)
+..+.+......+. . ...+.++.| +...+-+-++. ++.-++.|+.....+.+.+..+..
T Consensus 235 ~~~~~~v~~~~~~~~--~---~~~sSM~qD-l~~gr~tEid~i~G~vv~~a~~~gi~~P~~~~L~~lvk~~ 299 (307)
T COG1893 235 EEVVERVLAVIRATD--A---ENYSSMLQD-LEKGRPTEIDAINGAVVRLAKKHGLATPVNDTLYALLKAK 299 (307)
T ss_pred HHHHHHHHHHHHhcc--c---ccCchHHHH-HHcCCcccHHHHhhHHHHHHHHhCCCCcHHHHHHHHHHHH
Confidence 22333333332221 0 112334433 33333344443 445566677776667666655543
No 84
>PRK06444 prephenate dehydrogenase; Provisional
Probab=99.61 E-value=3.4e-14 Score=114.55 Aligned_cols=183 Identities=14% Similarity=0.197 Sum_probs=128.1
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccHHHHHH
Q 024016 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVAM 89 (274)
Q Consensus 11 ~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v~~ 89 (274)
|||+|||. |.||+.++..|.++|| .|+ +.+||+||+|+|.+.+.++++
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~----~v~---------------------------~~~~DlVilavPv~~~~~~i~ 49 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGL----GVY---------------------------IKKADHAFLSVPIDAALNYIE 49 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCC----EEE---------------------------ECCCCEEEEeCCHHHHHHHHH
Confidence 58999988 9999999999999998 764 258999999999999999998
Q ss_pred HhccccCCCCEEEEecCCCCHHHHHHhhCCCceEEEcCCc-HHhhcCC--ceEEecCCCCCHHHHHHHHHHhhhcCC-eE
Q 024016 90 QIRPLLSRKKLLVSVAAGVKLKDLQEWTGHSRFIRVMPNT-PSAVGEA--ATVMSLGGTATEEDGELIGKLFGSVGK-IW 165 (274)
Q Consensus 90 ~i~~~l~~~~~vis~~~g~~~~~l~~~~~~~~~~~~~p~~-~~~~~~g--~~~i~~~~~~~~~~~~~v~~ll~~~g~-~~ 165 (274)
++. ++++++ ++++.. +.+. ..+++..||.. |.....+ ...+...+..+++..+.++++++ |. .+
T Consensus 50 ~~~------~~v~Dv-~SvK~~-i~~~--~~~~vg~HPMfGp~~a~~~lf~~~iv~~~~~~~~~~~~~~~l~~--G~~~~ 117 (197)
T PRK06444 50 SYD------NNFVEI-SSVKWP-FKKY--SGKIVSIHPLFGPMSYNDGVHRTVIFINDISRDNYLNEINEMFR--GYHFV 117 (197)
T ss_pred HhC------CeEEec-cccCHH-HHHh--cCCEEecCCCCCCCcCcccccceEEEECCCCCHHHHHHHHHHHc--CCEEE
Confidence 865 255654 555553 3332 24788888864 2222222 12222344556777889999998 64 48
Q ss_pred EcCccchhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHhcCCCCchHH
Q 024016 166 RADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKS-GKHPGQLKDDVASPGGTTI 244 (274)
Q Consensus 166 ~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~t~ 244 (274)
.+++++||..+|.+++.|+.++. ++.+ .. ..+..++|+...+++.+. +.+|+.|.+.+..+...
T Consensus 118 ~~t~eeHD~~~A~ishLpH~ia~---al~~----~~------~~~~t~~fr~l~ria~~~~~~~p~lw~dI~~~N~~a-- 182 (197)
T PRK06444 118 EMTADEHDLLMSEIMVKPYIISM---ILKD----IK------SDIKTGSFDKLLEVSEIKEKENWEVFNDTIIYNPYT-- 182 (197)
T ss_pred EeCHHHHHHHHHHHHHHHHHHHH---HHcc----CC------CCCCCccHHHHHHHHHHhccCCHHHHHHHHHHCchH--
Confidence 89999999999999988876543 3322 11 245566777777776433 46899999998777554
Q ss_pred HHHHHHH
Q 024016 245 AGIHELE 251 (274)
Q Consensus 245 ~~l~~l~ 251 (274)
..++++.
T Consensus 183 ~~~~~~~ 189 (197)
T PRK06444 183 NVINDLI 189 (197)
T ss_pred HHHHHHH
Confidence 4444443
No 85
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=99.59 E-value=9.5e-14 Score=125.17 Aligned_cols=190 Identities=15% Similarity=0.168 Sum_probs=118.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCce----------------eccCchhhccCCC
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK----------------VLSDNNAVVEYSD 73 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~----------------~~~~~~~~~~~aD 73 (274)
.|||||||+|.||..||.+|.+ || +|++| |+++++.+.+.+ |.. ..++..+.+++||
T Consensus 6 ~mkI~vIGlGyvGlpmA~~la~-~~----~V~g~-D~~~~~ve~l~~-G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~ad 78 (425)
T PRK15182 6 EVKIAIIGLGYVGLPLAVEFGK-SR----QVVGF-DVNKKRILELKN-GVDVNLETTEEELREARYLKFTSEIEKIKECN 78 (425)
T ss_pred CCeEEEECcCcchHHHHHHHhc-CC----EEEEE-eCCHHHHHHHHC-cCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCC
Confidence 4799999999999999999876 68 99999 999999999883 321 3345556789999
Q ss_pred EEEEeeCcc-------c---HHHHHHHhccccCCCCEEEEecCCCCH---H-HHHHhhC---C-----CceEEEcCCc--
Q 024016 74 VVVFSVKPQ-------V---VKDVAMQIRPLLSRKKLLVSVAAGVKL---K-DLQEWTG---H-----SRFIRVMPNT-- 129 (274)
Q Consensus 74 iIil~v~~~-------~---~~~v~~~i~~~l~~~~~vis~~~g~~~---~-~l~~~~~---~-----~~~~~~~p~~-- 129 (274)
++|+|||.. + +....++|.+++++|++||..+ ++++ + .++..+. + ...+.+.|..
T Consensus 79 vvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~S-Tv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~ 157 (425)
T PRK15182 79 FYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYES-TVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERIN 157 (425)
T ss_pred EEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEec-CCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcCC
Confidence 999999732 3 3444467888889999888543 3332 2 2222221 1 1223333321
Q ss_pred H---HhhcCCceEEecCCCCCHHHHHHHHHHhhhcC--CeEEcCccchhhHHHhhcchHHHHHHHHHHHHH---HHHHcC
Q 024016 130 P---SAVGEAATVMSLGGTATEEDGELIGKLFGSVG--KIWRADEKLFDAITGLSGSGPAYIFLAIEALAD---GGVAAG 201 (274)
Q Consensus 130 ~---~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~g--~~~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e---~~~~~G 201 (274)
+ .....-..-++.|. +++..+.++++++.+. ..++++...-..++.++. +.|.+..+..+.| .+.+.|
T Consensus 158 ~G~a~~~~~~~~riv~G~--~~~~~~~~~~ly~~~~~~~~~~~~~~~~AE~~Kl~~--N~~~av~Ia~~NE~a~lae~~G 233 (425)
T PRK15182 158 PGDKKHRLTNIKKITSGS--TAQIAELIDEVYQQIISAGTYKAESIKVAEAAKVIE--NTQRDLNIALVNELAIIFNRLN 233 (425)
T ss_pred CCcccccccCCCeEEECC--CHHHHHHHHHHHHHHhhcCcEEecCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhC
Confidence 1 11111122344443 5777888999998875 245555433334444432 4454444444333 467999
Q ss_pred CCHHHHHHHH
Q 024016 202 LPRELALGLA 211 (274)
Q Consensus 202 l~~~~~~~~~ 211 (274)
+|.++..+.+
T Consensus 234 iD~~~v~~a~ 243 (425)
T PRK15182 234 IDTEAVLRAA 243 (425)
T ss_pred cCHHHHHHHh
Confidence 9999887763
No 86
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=99.58 E-value=2.2e-13 Score=121.39 Aligned_cols=186 Identities=13% Similarity=0.124 Sum_probs=116.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH----------------cCcee--ccCchhhccCC
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES----------------IGVKV--LSDNNAVVEYS 72 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~----------------~g~~~--~~~~~~~~~~a 72 (274)
|||+|||+|.||..+|..+. .|| +|++| |+++++.+.+.+ .+.+. ..+..+++++|
T Consensus 1 mkI~VIGlGyvGl~~A~~lA-~G~----~Vigv-D~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~a 74 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIA-QNH----EVVAL-DILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDA 74 (388)
T ss_pred CEEEEECCCHHHHHHHHHHH-hCC----cEEEE-ECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCC
Confidence 58999999999999996665 599 99999 999999988765 22233 23356778899
Q ss_pred CEEEEeeCcc-----------cHHHHHHHhccccCCCCEEEEecCCCC---HHHHHHhhCCCceEEEcCCcHHhhcCCce
Q 024016 73 DVVVFSVKPQ-----------VVKDVAMQIRPLLSRKKLLVSVAAGVK---LKDLQEWTGHSRFIRVMPNTPSAVGEAAT 138 (274)
Q Consensus 73 DiIil~v~~~-----------~~~~v~~~i~~~l~~~~~vis~~~g~~---~~~l~~~~~~~~~~~~~p~~~~~~~~g~~ 138 (274)
|+||+|||.. .++++++++.. ++++++||.. ++++ .+.+.+.+... .+.+. |.....|..
T Consensus 75 d~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~-STv~pgtt~~l~~~~~~~-~v~~~---PE~l~~G~a 148 (388)
T PRK15057 75 DYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIK-STVPVGFTAAMHKKYRTE-NIIFS---PEFLREGKA 148 (388)
T ss_pred CEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEe-eecCCchHHHHHHHhhcC-cEEEC---cccccCCcc
Confidence 9999999833 56778888876 6888888843 3333 44555444322 22332 333333432
Q ss_pred --------EEecCCCCCHHHHHHHHHHhhh--cCCe--EEcCccchhhHHHhhcchHHHHHHHHHH---HHHHHHHcCCC
Q 024016 139 --------VMSLGGTATEEDGELIGKLFGS--VGKI--WRADEKLFDAITGLSGSGPAYIFLAIEA---LADGGVAAGLP 203 (274)
Q Consensus 139 --------~i~~~~~~~~~~~~~v~~ll~~--~g~~--~~~~e~~~~~~~a~~~~~~~~~~~~~~~---l~e~~~~~Gl~ 203 (274)
-++.|. +++..+.+.+++.. ++.. ++++...-..++.+.. +.|.+..+.. ++..+.+.|+|
T Consensus 149 ~~d~~~p~rvv~G~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~~Kl~~--N~~~a~~Ia~~NE~a~lae~~GiD 224 (388)
T PRK15057 149 LYDNLHPSRIVIGE--RSERAERFAALLQEGAIKQNIPTLFTDSTEAEAIKLFA--NTYLAMRVAYFNELDSYAESLGLN 224 (388)
T ss_pred cccccCCCEEEEEc--CcHHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhCcC
Confidence 333332 35667778888754 5543 2445433334444432 4454443333 33446789999
Q ss_pred HHHHHHHHH
Q 024016 204 RELALGLAS 212 (274)
Q Consensus 204 ~~~~~~~~~ 212 (274)
.++..+.+.
T Consensus 225 ~~eV~~a~~ 233 (388)
T PRK15057 225 TRQIIEGVC 233 (388)
T ss_pred HHHHHHHhc
Confidence 988776653
No 87
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=99.57 E-value=6.1e-13 Score=115.38 Aligned_cols=243 Identities=13% Similarity=0.108 Sum_probs=144.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceecc-----------CchhhccCCCEEEE
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLS-----------DNNAVVEYSDVVVF 77 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~~-----------~~~~~~~~aDiIil 77 (274)
.|||+|||+|.||+.++..|.++|+ +|+++ .|++++.+.+.+ .|+.+.. ...+....+|+||+
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~----~V~lv-~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv 76 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGL----PVRLI-LRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLL 76 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCC----CeEEE-EechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEE
Confidence 4799999999999999999999998 99999 998888887765 3443311 11122357899999
Q ss_pred eeCcccHHHHHHHhccccCCCCEEEEecCCCCH-HHHHHhhCCCceEEEcCC------cHHhhc-CCceEEecCCCCCHH
Q 024016 78 SVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKL-KDLQEWTGHSRFIRVMPN------TPSAVG-EAATVMSLGGTATEE 149 (274)
Q Consensus 78 ~v~~~~~~~v~~~i~~~l~~~~~vis~~~g~~~-~~l~~~~~~~~~~~~~p~------~~~~~~-~g~~~i~~~~~~~~~ 149 (274)
|||..+..++++.+.+.+.+++.|+++.+|+.. +.+++.++..+++..... .|..+. .+...+..|.. +.+
T Consensus 77 ~vK~~~~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~~~~~~~~v~~g~~~~ga~~~~pg~v~~~~~g~~~~G~~-~~~ 155 (305)
T PRK05708 77 ACKAYDAEPAVASLAHRLAPGAELLLLQNGLGSQDAVAARVPHARCIFASSTEGAFRDGDWRVVFAGHGFTWLGDP-RNP 155 (305)
T ss_pred ECCHHhHHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHHHhCCCCcEEEEEeeeceecCCCCEEEEeceEEEEEcCC-CCc
Confidence 999999999999999999999999999999986 567777774444432211 122111 11111222322 234
Q ss_pred HHHHHHHHhhhcCCeEEcCcc-------------chhhHHHhhcchHH-------HHHHHHHHHHHHHHHcCCCH--HHH
Q 024016 150 DGELIGKLFGSVGKIWRADEK-------------LFDAITGLSGSGPA-------YIFLAIEALADGGVAAGLPR--ELA 207 (274)
Q Consensus 150 ~~~~v~~ll~~~g~~~~~~e~-------------~~~~~~a~~~~~~~-------~~~~~~~~l~e~~~~~Gl~~--~~~ 207 (274)
..+.+.++|...|.....+++ .++.++++.++.+. .+..++.-+.+.+.+.|++. +..
T Consensus 156 ~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~~~l~~E~~~va~a~G~~~~~~~~ 235 (305)
T PRK05708 156 TAPAWLDDLREAGIPHEWTVDILTRLWRKLALNCAINPLTVLHDCRNGGLLEHAQEVAALCAELSELLRRCGQPAAAANL 235 (305)
T ss_pred chHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHccccHhHHhhCCCCcchhcCHHHHHHHHHHHHHHHHHcCCCccHHHH
Confidence 456777888877755444432 24666777654332 22222323333456778653 333
Q ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHH-----HHHHHHHhCCHHHHHHHHHHH
Q 024016 208 LGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTI-----AGIHELEKSGFRGILMNAVVA 265 (274)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~-----~~l~~l~~~~~~~~~~~a~~~ 265 (274)
.+.+......+ ....+.++.|.. ..+-+-. ..++.-++.|+.....+.+..
T Consensus 236 ~~~~~~~~~~~------~~~~sSM~qD~~-~gR~tEid~i~G~vvr~a~~~Gv~~P~~~~l~~ 291 (305)
T PRK05708 236 HEEVQRVIQAT------AANYSSMYQDVR-AGRRTEISYLLGYACRAADRHGLPLPRLQHLQQ 291 (305)
T ss_pred HHHHHHHHHhc------cCCCcHHHHHHH-cCCceeehhhhhHHHHHHHHcCCCCchHHHHHH
Confidence 33333222111 122344554443 2222222 234455666666555555443
No 88
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=99.52 E-value=1.1e-12 Score=112.07 Aligned_cols=149 Identities=21% Similarity=0.251 Sum_probs=116.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-----------cC-------------ceeccC
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----------IG-------------VKVLSD 64 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-----------~g-------------~~~~~~ 64 (274)
..+||+|||+|.||+.||..+...|| +|+++ |++++.++.... .| ++..++
T Consensus 2 ~i~kv~ViGaG~MG~gIA~~~A~~G~----~V~l~-D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~ 76 (307)
T COG1250 2 EIKKVAVIGAGVMGAGIAAVFALAGY----DVVLK-DISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTD 76 (307)
T ss_pred CccEEEEEcccchhHHHHHHHhhcCC----ceEEE-eCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCc
Confidence 46799999999999999999999889 99999 999766443321 12 111222
Q ss_pred chhhccCCCEEEEeeCcc--cHHHHHHHhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHhhcCCceEEe
Q 024016 65 NNAVVEYSDVVVFSVKPQ--VVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMS 141 (274)
Q Consensus 65 ~~~~~~~aDiIil~v~~~--~~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~i~ 141 (274)
. ..+.+||+||-+++-+ .-++++.++....+|++++-|.++++++..+++.+. ..+++..|+..|..... ..-+.
T Consensus 77 ~-~~l~~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it~ia~~~~rper~iG~HFfNP~~~m~-LVEvI 154 (307)
T COG1250 77 L-AALKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSITELAEALKRPERFIGLHFFNPVPLMP-LVEVI 154 (307)
T ss_pred h-hHhccCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHHHHHHHhCCchhEEEEeccCCCCcce-eEEEe
Confidence 2 2578999999999743 356888899888899999999999999999988775 35788888877765543 23345
Q ss_pred cCCCCCHHHHHHHHHHhhhcCCe
Q 024016 142 LGGTATEEDGELIGKLFGSVGKI 164 (274)
Q Consensus 142 ~~~~~~~~~~~~v~~ll~~~g~~ 164 (274)
.+..++++.++.+.++.+.+|+.
T Consensus 155 ~g~~T~~e~~~~~~~~~~~igK~ 177 (307)
T COG1250 155 RGEKTSDETVERVVEFAKKIGKT 177 (307)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCC
Confidence 67778899999999999999975
No 89
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=99.51 E-value=1.7e-12 Score=124.09 Aligned_cols=154 Identities=18% Similarity=0.149 Sum_probs=122.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-----------c-------------CceeccC
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----------I-------------GVKVLSD 64 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-----------~-------------g~~~~~~ 64 (274)
..+||+|||+|.||..||..+..+|+ +|+++ |++++..+...+ . .++..++
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G~----~V~l~-d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 386 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSASKGT----PIVMK-DINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLS 386 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHhCCC----eEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCC
Confidence 44689999999999999999999999 99999 999987553221 1 1333444
Q ss_pred chhhccCCCEEEEeeCcc--cHHHHHHHhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHhhcCCceEEe
Q 024016 65 NNAVVEYSDVVVFSVKPQ--VVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMS 141 (274)
Q Consensus 65 ~~~~~~~aDiIil~v~~~--~~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~i~ 141 (274)
. +.+++||+||-|++-+ .-++++.++....++++++.|.++++++..+++.+. ..+++..|+..|..... ..-++
T Consensus 387 ~-~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~~~~~p~r~ig~Hff~P~~~~~-lvEvv 464 (714)
T TIGR02437 387 Y-AGFDNVDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMP-LVEVI 464 (714)
T ss_pred H-HHhcCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEecCCCcccCc-eEeec
Confidence 4 4578999999999743 456888999999999999999999999999988775 35789999877766543 23355
Q ss_pred cCCCCCHHHHHHHHHHhhhcCCe-EEcCc
Q 024016 142 LGGTATEEDGELIGKLFGSVGKI-WRADE 169 (274)
Q Consensus 142 ~~~~~~~~~~~~v~~ll~~~g~~-~~~~e 169 (274)
.++.+++++++.+..+++.+|+. +.+.+
T Consensus 465 ~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d 493 (714)
T TIGR02437 465 RGEKSSDETIATVVAYASKMGKTPIVVND 493 (714)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEeCC
Confidence 67888999999999999999986 66543
No 90
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.50 E-value=2.1e-12 Score=123.66 Aligned_cols=153 Identities=20% Similarity=0.147 Sum_probs=120.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH-----------Hc-------------CceeccC
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE-----------SI-------------GVKVLSD 64 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~-----------~~-------------g~~~~~~ 64 (274)
...||+|||+|.||..||..+..+|+ +|+++ |++++..+... +. .++..++
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G~----~V~l~-d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~ 386 (715)
T PRK11730 312 PVKQAAVLGAGIMGGGIAYQSASKGV----PVIMK-DINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLD 386 (715)
T ss_pred ccceEEEECCchhHHHHHHHHHhCCC----eEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCC
Confidence 34689999999999999999999999 99999 99998754321 11 1334444
Q ss_pred chhhccCCCEEEEeeCcc--cHHHHHHHhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHhhcCCceEEe
Q 024016 65 NNAVVEYSDVVVFSVKPQ--VVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMS 141 (274)
Q Consensus 65 ~~~~~~~aDiIil~v~~~--~~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~i~ 141 (274)
. +.+++||+||-|++-+ .-++++.++.+..++++++.|.++++++..+.+.+. ..+++..|...|..... ..-++
T Consensus 387 ~-~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~~g~Hff~P~~~~~-lVEvv 464 (715)
T PRK11730 387 Y-AGFERVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMP-LVEVI 464 (715)
T ss_pred H-HHhcCCCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCCccEEEEecCCcccccc-eEEee
Confidence 4 5578999999999743 456888999999999999999999999999988776 35788888877765433 23355
Q ss_pred cCCCCCHHHHHHHHHHhhhcCCe-EEcC
Q 024016 142 LGGTATEEDGELIGKLFGSVGKI-WRAD 168 (274)
Q Consensus 142 ~~~~~~~~~~~~v~~ll~~~g~~-~~~~ 168 (274)
.++.++++.++.+..+++.+|+. +.+.
T Consensus 465 ~g~~T~~~~~~~~~~~~~~lgk~pv~v~ 492 (715)
T PRK11730 465 RGEKTSDETIATVVAYASKMGKTPIVVN 492 (715)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCceEEec
Confidence 67888999999999999999975 6554
No 91
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.50 E-value=7.2e-12 Score=104.56 Aligned_cols=222 Identities=19% Similarity=0.177 Sum_probs=152.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHH-HHHHHHcCceeccCchhhccCCCEEEEeeCcccHHHH
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKR-RDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDV 87 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~-~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v 87 (274)
+.+||+|||+|+-|.+-+.+|.++|. +|++- -|.... .++..+.|..+. +..|+++.+|+|++-+|+..-.++
T Consensus 17 kgK~iaIIGYGsQG~ahalNLRDSGl----nViiG-lr~g~~s~~kA~~dGf~V~-~v~ea~k~ADvim~L~PDe~q~~v 90 (338)
T COG0059 17 KGKKVAIIGYGSQGHAQALNLRDSGL----NVIIG-LRKGSSSWKKAKEDGFKVY-TVEEAAKRADVVMILLPDEQQKEV 90 (338)
T ss_pred cCCeEEEEecChHHHHHHhhhhhcCC----cEEEE-ecCCchhHHHHHhcCCEee-cHHHHhhcCCEEEEeCchhhHHHH
Confidence 56799999999999999999999999 88777 554443 677777898875 788999999999999999999999
Q ss_pred HH-HhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHhh-------cCCceEEe-cCCCCCHHHHHHHHHH
Q 024016 88 AM-QIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAV-------GEAATVMS-LGGTATEEDGELIGKL 157 (274)
Q Consensus 88 ~~-~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~~-------~~g~~~i~-~~~~~~~~~~~~v~~l 157 (274)
++ +|.|.+++|+.+. .+.|..+..-.-..| +..++-+-|..|.+. |.|+..++ ...+.+-.+.+....+
T Consensus 91 y~~~I~p~Lk~G~aL~-FaHGfNihf~~i~ppkdvdV~MVAPKgPG~~VR~~y~~G~GvP~LiAV~qD~sG~a~~~Ala~ 169 (338)
T COG0059 91 YEKEIAPNLKEGAALG-FAHGFNIHFGLIVPPKDVDVIMVAPKGPGHLVRREYKEGFGVPALIAVHQDASGKALDIALAY 169 (338)
T ss_pred HHHHhhhhhcCCceEE-eccccceecceecCCccCcEEEEcCCCCcHHHHHHHHccCCceeEEEEEeCCCchHHHHHHHH
Confidence 97 7999999998544 567766543221122 456777777766542 56665543 2334456678888888
Q ss_pred hhhcCC--e-EEc----Cc---cchhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcC-
Q 024016 158 FGSVGK--I-WRA----DE---KLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSG- 226 (274)
Q Consensus 158 l~~~g~--~-~~~----~e---~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~- 226 (274)
...+|. . +.- .| +.+..-+.+||.. ..++.+-.|.+++.|.+++.|+--+..-++-...++.+.|
T Consensus 170 AkgiGg~RaGvieTTFkeEtetDLfGEQ~vLcGgl----~~li~agfetLvEaGy~PE~AyfE~lhE~klIvdLiyegGi 245 (338)
T COG0059 170 AKGIGGTRAGVIETTFKEETETDLFGEQAVLCGGL----QALIKAGFETLVEAGYQPELAYFECLHELKLIVDLIYEGGI 245 (338)
T ss_pred HHhcCCCccceEeeeeHHhhhcccccchhhhhhHH----HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 898883 2 221 12 3445555666533 3344556677889999999988766555555555554433
Q ss_pred -------CChHHHHHhcCCCCc
Q 024016 227 -------KHPGQLKDDVASPGG 241 (274)
Q Consensus 227 -------~~~~~~~~~~~~~~g 241 (274)
.+...+.+-+..|.-
T Consensus 246 ~~M~~siSnTAeyG~~~~gpri 267 (338)
T COG0059 246 TNMRYSISNTAEYGDYTRGPRI 267 (338)
T ss_pred HHHHHhcCCHHHhcccccCcee
Confidence 234445555555543
No 92
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=99.50 E-value=5.6e-12 Score=111.61 Aligned_cols=208 Identities=17% Similarity=0.157 Sum_probs=145.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC------HHHHHHHHHcCceeccCchhhccCCCEEEEeeCcc
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN------LKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ 82 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~------~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~ 82 (274)
+.++|+|||+|++|.+.|.+|...|+ +|++- -|. .+..+.+.+.|..+ .+..++++.||+|++.+|+.
T Consensus 35 kgKtIaIIGyGSqG~AqAlNLrdSGv----nVvvg-lr~~~id~~~~s~~kA~~dGF~v-~~~~Ea~~~ADvVviLlPDt 108 (487)
T PRK05225 35 KGKKIVIVGCGAQGLNQGLNMRDSGL----DISYA-LRKEAIAEKRASWRKATENGFKV-GTYEELIPQADLVINLTPDK 108 (487)
T ss_pred CCCEEEEEccCHHHHHHhCCCccccc----eeEEe-ccccccccccchHHHHHhcCCcc-CCHHHHHHhCCEEEEcCChH
Confidence 45899999999999999999999998 88755 343 34455555678766 57889999999999999998
Q ss_pred cHHHHHHHhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHh-------hcCCceEEe-cC--CCCCHHHH
Q 024016 83 VVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSA-------VGEAATVMS-LG--GTATEEDG 151 (274)
Q Consensus 83 ~~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~-------~~~g~~~i~-~~--~~~~~~~~ 151 (274)
.-..+..++.+.+++|..+. .+.|..+....-..| +..++-+-|..|.. -|.|+..++ .. .+.+....
T Consensus 109 ~q~~v~~~i~p~LK~Ga~L~-fsHGFni~~~~i~~~~dvdVimvAPKgpG~~vR~~y~~G~Gvp~l~AV~~~qD~~g~a~ 187 (487)
T PRK05225 109 QHSDVVRAVQPLMKQGAALG-YSHGFNIVEVGEQIRKDITVVMVAPKCPGTEVREEYKRGFGVPTLIAVHPENDPKGEGM 187 (487)
T ss_pred HHHHHHHHHHhhCCCCCEEE-ecCCceeeeCceeCCCCCcEEEECCCCCCchHHHHHhcCCCceEEEEEeecCCCCchHH
Confidence 77778888999999998765 556666443222223 56677777766642 255665443 22 24556678
Q ss_pred HHHHHHhhhcCCe---EE-cC---c---cchhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Q 024016 152 ELIGKLFGSVGKI---WR-AD---E---KLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASM 221 (274)
Q Consensus 152 ~~v~~ll~~~g~~---~~-~~---e---~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~~~~~~~ 221 (274)
+....+...+|.. +. .+ | +.+..-+.++|.. ....++..+..++.|.+++.|+..+..++....++
T Consensus 188 ~~ala~a~~iG~~ragv~~ttf~~E~~sDL~GEq~vLcG~~----~~~~~~~Fe~lve~G~~pe~A~k~~~~~~E~I~e~ 263 (487)
T PRK05225 188 AIAKAWAAATGGHRAGVLESSFVAEVKSDLMGEQTILCGML----QAGSLLCFDKLVAEGTDPAYAEKLIQFGWETITEA 263 (487)
T ss_pred HHHHHHHHHhCCCccceeecchHHHHhhcchhhHHHHHhHH----HHHHHHHHHHHHHcCCCHHHHHHHHhhhHHHHHHH
Confidence 8888888888843 22 11 2 3444455555532 33455677778889999999998887777777777
Q ss_pred HHhcCC
Q 024016 222 VTKSGK 227 (274)
Q Consensus 222 ~~~~~~ 227 (274)
+.+.|.
T Consensus 264 i~e~GI 269 (487)
T PRK05225 264 LKQGGI 269 (487)
T ss_pred HHhccH
Confidence 655443
No 93
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=99.49 E-value=4e-12 Score=121.45 Aligned_cols=154 Identities=14% Similarity=0.108 Sum_probs=120.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHH-hCCCCCCCcEEEEeCCCHHHHHHHH-----------Hc-------------Cceecc
Q 024016 9 ESFILGFIGAGKMAESIAKGVA-KSGVLPPDRICTAVHSNLKRRDAFE-----------SI-------------GVKVLS 63 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~-~~g~~~~~~v~v~~~r~~~~~~~l~-----------~~-------------g~~~~~ 63 (274)
..+||+|||+|.||+.||..+. .+|+ +|+++ |++++..+... +. .++..+
T Consensus 303 ~i~~v~ViGaG~mG~~iA~~~a~~~G~----~V~l~-d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~ 377 (699)
T TIGR02440 303 KIKKVGILGGGLMGGGIASVTATKAGI----PVRIK-DINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTT 377 (699)
T ss_pred cccEEEEECCcHHHHHHHHHHHHHcCC----eEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeC
Confidence 3468999999999999999887 5899 99999 99987654321 11 233444
Q ss_pred CchhhccCCCEEEEeeCcc--cHHHHHHHhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHhhcCCceEE
Q 024016 64 DNNAVVEYSDVVVFSVKPQ--VVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVM 140 (274)
Q Consensus 64 ~~~~~~~~aDiIil~v~~~--~~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~i 140 (274)
+. +.+++||+||-|+|.+ .-.+++.++....++++++.|.++++++..+++.+. ..+++..|+..|..... ..-+
T Consensus 378 ~~-~~~~~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~~g~HffnP~~~~~-lVEv 455 (699)
T TIGR02440 378 DY-RGFKDVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAAAASRPENVIGLHYFSPVEKMP-LVEV 455 (699)
T ss_pred Ch-HHhccCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHhcCCcccEEEEecCCccccCc-eEEE
Confidence 54 5678999999999744 346888999998999999999999999999988775 35788888877765433 3335
Q ss_pred ecCCCCCHHHHHHHHHHhhhcCCe-EEcCc
Q 024016 141 SLGGTATEEDGELIGKLFGSVGKI-WRADE 169 (274)
Q Consensus 141 ~~~~~~~~~~~~~v~~ll~~~g~~-~~~~e 169 (274)
+.++.++++.++.+..+++.+|+. +.+.+
T Consensus 456 v~g~~T~~~~~~~~~~~~~~~gk~pv~v~d 485 (699)
T TIGR02440 456 IPHAGTSEQTIATTVALAKKQGKTPIVVAD 485 (699)
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCeEEEEcc
Confidence 567888999999999999999986 66543
No 94
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=99.49 E-value=1e-12 Score=110.89 Aligned_cols=164 Identities=16% Similarity=0.194 Sum_probs=125.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeccCchhhcc-CCCEEEEeeCcccHHH
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVE-YSDVVVFSVKPQVVKD 86 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~-~aDiIil~v~~~~~~~ 86 (274)
...+|||||.|+||.-+|..|.++|| .+..+ +|+. .+.+++ .|..-.+.+.++++ ..|+|++||....++.
T Consensus 51 ~tl~IaIIGfGnmGqflAetli~aGh----~li~h-sRsd--yssaa~~yg~~~ft~lhdlcerhpDvvLlctsilsiek 123 (480)
T KOG2380|consen 51 ATLVIAIIGFGNMGQFLAETLIDAGH----GLICH-SRSD--YSSAAEKYGSAKFTLLHDLCERHPDVVLLCTSILSIEK 123 (480)
T ss_pred cceEEEEEecCcHHHHHHHHHHhcCc----eeEec-Ccch--hHHHHHHhcccccccHHHHHhcCCCEEEEEehhhhHHH
Confidence 34689999999999999999999999 99999 8875 344444 77766666666654 7999999999999999
Q ss_pred HHHHhccc-cCCCCEEEEecCC--CCHHHHHHhhC-CCceEEEcCCc-HHhh---cCCceEEec----CC-CCCHHHHHH
Q 024016 87 VAMQIRPL-LSRKKLLVSVAAG--VKLKDLQEWTG-HSRFIRVMPNT-PSAV---GEAATVMSL----GG-TATEEDGEL 153 (274)
Q Consensus 87 v~~~i~~~-l~~~~~vis~~~g--~~~~~l~~~~~-~~~~~~~~p~~-~~~~---~~g~~~i~~----~~-~~~~~~~~~ 153 (274)
++..+-+. ++.|+++++..+- ...+.+.+++| +..++.+||.+ |..+ .+|...++. +. ..-++.++.
T Consensus 124 ilatypfqrlrrgtlfvdvlSvKefek~lfekYLPkdfDIlctHpmfGPksvnh~wqglpfVydkvRig~~~~r~ercE~ 203 (480)
T KOG2380|consen 124 ILATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLPKDFDILCTHPMFGPKSVNHEWQGLPFVYDKVRIGYAASRPERCEF 203 (480)
T ss_pred HHHhcCchhhccceeEeeeeecchhHHHHHHHhCccccceEeecCCcCCCcCCCccccCceEEEEeeccccccchHHHHH
Confidence 99887765 7889888866443 33456788888 68899999874 4323 345554442 21 123788999
Q ss_pred HHHHhhhcCCe-EEcCccchhhHHHhh
Q 024016 154 IGKLFGSVGKI-WRADEKLFDAITGLS 179 (274)
Q Consensus 154 v~~ll~~~g~~-~~~~e~~~~~~~a~~ 179 (274)
+.++|.+.|.. ++++-++||.++|-+
T Consensus 204 fleIf~cegckmVemS~eeHDkiaAds 230 (480)
T KOG2380|consen 204 FLEIFACEGCKMVEMSYEEHDKIAADS 230 (480)
T ss_pred HHHHHHhcCCeEEEEEeecccccccch
Confidence 99999999965 899999999988754
No 95
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.49 E-value=2.6e-12 Score=110.63 Aligned_cols=194 Identities=15% Similarity=0.199 Sum_probs=126.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc-----CceeccCchhh---ccCCCEEEEeeC
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI-----GVKVLSDNNAV---VEYSDVVVFSVK 80 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~-----g~~~~~~~~~~---~~~aDiIil~v~ 80 (274)
.+..||+||+|.||+.++.++.++|| .|.+| ||++++.+++.+. .+..+.+.+|. ++...-|+++|+
T Consensus 2 ~~~~iGviGLaVMG~NLaLNi~~~G~----~Vavy-NRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVk 76 (473)
T COG0362 2 MKADIGVIGLAVMGSNLALNIADHGY----TVAVY-NRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVK 76 (473)
T ss_pred CccceeeEehhhhhHHHHHHHHhcCc----eEEEE-eCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEe
Confidence 45689999999999999999999999 99999 9999999998872 23344555554 567899999998
Q ss_pred cc-cHHHHHHHhccccCCCCEEEEecCCCCHHHHHHh--h-C-CCceEEEc-CCcHHhhcCCceEEecCCCCCHHHHHHH
Q 024016 81 PQ-VVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEW--T-G-HSRFIRVM-PNTPSAVGEAATVMSLGGTATEEDGELI 154 (274)
Q Consensus 81 ~~-~~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~--~-~-~~~~~~~~-p~~~~~~~~g~~~i~~~~~~~~~~~~~v 154 (274)
.. .+..++++|.|++.+|.++|+--++.=.+++++. + + +..++..- ...-.-...|++++..| ++++.+.+
T Consensus 77 AG~~VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~GPSiMpGG---~~eay~~v 153 (473)
T COG0362 77 AGTPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHGPSIMPGG---QKEAYELV 153 (473)
T ss_pred cCCcHHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccCCCcCCCC---CHHHHHHH
Confidence 74 4788999999999999999986555434444332 2 2 33444431 11111223456655433 79999999
Q ss_pred HHHhhhcC-----C-e-EEcCccchhhHHHhhcchHHHHHHHHHHHHHH---HH-HcCCCHHHHHHHHH
Q 024016 155 GKLFGSVG-----K-I-WRADEKLFDAITGLSGSGPAYIFLAIEALADG---GV-AAGLPRELALGLAS 212 (274)
Q Consensus 155 ~~ll~~~g-----~-~-~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~---~~-~~Gl~~~~~~~~~~ 212 (274)
.++|+.+. . + .+++++.-..+..+...|--| .=++.+.|+ .+ -.|++.++..++..
T Consensus 154 ~pil~~IaAk~~g~pCc~~iG~~GAGHfVKmVHNGIEY--gDMQlIaE~Y~ilk~~lgls~~ei~~vF~ 220 (473)
T COG0362 154 APILTKIAAKVDGEPCCTWIGPDGAGHFVKMVHNGIEY--GDMQLIAEAYDILKDGLGLSAEEIAEVFE 220 (473)
T ss_pred HHHHHHHHhhcCCCCceeeECCCCCCceeeeeecCchH--HHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 99998773 2 2 566765433333333323222 112233333 22 36777776555443
No 96
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=99.47 E-value=2.3e-13 Score=104.39 Aligned_cols=146 Identities=21% Similarity=0.280 Sum_probs=95.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH-HHHHHHHcCceeccCchhhccCCCEEEEeeCcccHHHH
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK-RRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDV 87 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~-~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v 87 (274)
+.++|+|||.|..|.+.|.+|.++|+ +|++. .|..+ ..++..+.|..+. +..|+++++|+|++.+|+....++
T Consensus 3 ~~k~IAViGyGsQG~a~AlNLrDSG~----~V~Vg-lr~~s~s~~~A~~~Gf~v~-~~~eAv~~aDvV~~L~PD~~q~~v 76 (165)
T PF07991_consen 3 KGKTIAVIGYGSQGHAHALNLRDSGV----NVIVG-LREGSASWEKAKADGFEVM-SVAEAVKKADVVMLLLPDEVQPEV 76 (165)
T ss_dssp CTSEEEEES-SHHHHHHHHHHHHCC-----EEEEE-E-TTCHHHHHHHHTT-ECC-EHHHHHHC-SEEEE-S-HHHHHHH
T ss_pred CCCEEEEECCChHHHHHHHHHHhCCC----CEEEE-ecCCCcCHHHHHHCCCeec-cHHHHHhhCCEEEEeCChHHHHHH
Confidence 45799999999999999999999999 99988 77665 6677777898875 678999999999999999999999
Q ss_pred H-HHhccccCCCCEEEEecCCCCHHHHHHhhC--CCceEEEcCCcHHhh-------cCCceEEe-cCCCCCHHHHHHHHH
Q 024016 88 A-MQIRPLLSRKKLLVSVAAGVKLKDLQEWTG--HSRFIRVMPNTPSAV-------GEAATVMS-LGGTATEEDGELIGK 156 (274)
Q Consensus 88 ~-~~i~~~l~~~~~vis~~~g~~~~~l~~~~~--~~~~~~~~p~~~~~~-------~~g~~~i~-~~~~~~~~~~~~v~~ 156 (274)
+ ++|.+.+++|++++ .+.|..+. .....| +..++-..|..|.+. +.|...++ ...+.+..+.+....
T Consensus 77 y~~~I~p~l~~G~~L~-fahGfni~-~~~i~pp~~vdV~mvAPKgpG~~vR~~y~~G~Gvp~l~AV~qD~sg~A~~~ala 154 (165)
T PF07991_consen 77 YEEEIAPNLKPGATLV-FAHGFNIH-YGLIKPPKDVDVIMVAPKGPGHLVRREYVEGRGVPALIAVHQDASGKAKELALA 154 (165)
T ss_dssp HHHHHHHHS-TT-EEE-ESSSHHHH-CTTS---TTSEEEEEEESSSCHHHHHHHHCCTS--EEEEEEE-SSS-HHHHHHH
T ss_pred HHHHHHhhCCCCCEEE-eCCcchhh-cCcccCCCCCeEEEEecCCCChHHHHHHHcCCCceEEEEEEECCCchHHHHHHH
Confidence 9 77999999998766 55665442 111122 455666667665432 45554433 222234455666666
Q ss_pred HhhhcC
Q 024016 157 LFGSVG 162 (274)
Q Consensus 157 ll~~~g 162 (274)
+...+|
T Consensus 155 ~A~~iG 160 (165)
T PF07991_consen 155 YAKAIG 160 (165)
T ss_dssp HHHHTT
T ss_pred HHHHhC
Confidence 666655
No 97
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=99.47 E-value=7.9e-12 Score=119.83 Aligned_cols=154 Identities=14% Similarity=0.138 Sum_probs=122.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-----------c-------------CceeccC
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----------I-------------GVKVLSD 64 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-----------~-------------g~~~~~~ 64 (274)
...+|+|||+|.||..||..+..+|+ +|+++ |++++.++...+ . .++..++
T Consensus 334 ~i~~v~ViGaG~MG~gIA~~~a~~G~----~V~l~-d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~ 408 (737)
T TIGR02441 334 PVKTLAVLGAGLMGAGIAQVSVDKGL----KTVLK-DATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLD 408 (737)
T ss_pred cccEEEEECCCHhHHHHHHHHHhCCC----cEEEe-cCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCC
Confidence 45789999999999999999999999 99999 999987654221 1 1333444
Q ss_pred chhhccCCCEEEEeeCcc--cHHHHHHHhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHhhcCCceEEe
Q 024016 65 NNAVVEYSDVVVFSVKPQ--VVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMS 141 (274)
Q Consensus 65 ~~~~~~~aDiIil~v~~~--~~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~i~ 141 (274)
. +.+++||+||-|++.+ .-++++.++.+..++++++.|.++++++..+++.+. ..+++..|+..|..... ..-++
T Consensus 409 ~-~~~~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~ig~Hff~P~~~m~-LvEvv 486 (737)
T TIGR02441 409 Y-SGFKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVIGMHYFSPVDKMQ-LLEII 486 (737)
T ss_pred H-HHhccCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCccceEEEeccCCcccCc-eEEEe
Confidence 4 4578999999999744 356888999999999999999999999999988775 35788888877766543 33455
Q ss_pred cCCCCCHHHHHHHHHHhhhcCCe-EEcCc
Q 024016 142 LGGTATEEDGELIGKLFGSVGKI-WRADE 169 (274)
Q Consensus 142 ~~~~~~~~~~~~v~~ll~~~g~~-~~~~e 169 (274)
.++.++++.++.+..+++.+|+. +.+.+
T Consensus 487 ~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d 515 (737)
T TIGR02441 487 THDGTSKDTLASAVAVGLKQGKVVIVVKD 515 (737)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCeEEEECC
Confidence 67888999999999999999986 65543
No 98
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.46 E-value=7.2e-12 Score=120.00 Aligned_cols=153 Identities=14% Similarity=0.101 Sum_probs=120.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHH-hCCCCCCCcEEEEeCCCHHHHHHHH-----------Hc-------------Cceecc
Q 024016 9 ESFILGFIGAGKMAESIAKGVA-KSGVLPPDRICTAVHSNLKRRDAFE-----------SI-------------GVKVLS 63 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~-~~g~~~~~~v~v~~~r~~~~~~~l~-----------~~-------------g~~~~~ 63 (274)
..+||+|||+|.||..||..+. .+|+ +|+++ |++++..+... +. .++.++
T Consensus 308 ~i~~v~ViGaG~mG~giA~~~a~~~G~----~V~l~-d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~ 382 (708)
T PRK11154 308 PVNKVGVLGGGLMGGGIAYVTATKAGL----PVRIK-DINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTT 382 (708)
T ss_pred cccEEEEECCchhhHHHHHHHHHHcCC----eEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeC
Confidence 3478999999999999999998 8899 99999 99987654321 11 133444
Q ss_pred CchhhccCCCEEEEeeCcc--cHHHHHHHhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHhhcCCceEE
Q 024016 64 DNNAVVEYSDVVVFSVKPQ--VVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVM 140 (274)
Q Consensus 64 ~~~~~~~~aDiIil~v~~~--~~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~i 140 (274)
+. +.+++||+||-|++.+ .-++++.++....+|++++.|.++++++..+++.+. ..+++..|+..|..... ..-+
T Consensus 383 ~~-~~~~~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~Hff~P~~~~~-lVEv 460 (708)
T PRK11154 383 DY-RGFKHADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKMP-LVEV 460 (708)
T ss_pred Ch-HHhccCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcCcccceEEEecCCccccCc-eEEE
Confidence 44 5678999999999743 456888999999999999999999999999988775 35788888877765433 3345
Q ss_pred ecCCCCCHHHHHHHHHHhhhcCCe-EEcC
Q 024016 141 SLGGTATEEDGELIGKLFGSVGKI-WRAD 168 (274)
Q Consensus 141 ~~~~~~~~~~~~~v~~ll~~~g~~-~~~~ 168 (274)
++++.++++..+.+..+++.+|+. +.+.
T Consensus 461 v~g~~Ts~~~~~~~~~~~~~~gk~pv~v~ 489 (708)
T PRK11154 461 IPHAKTSAETIATTVALAKKQGKTPIVVR 489 (708)
T ss_pred ECCCCCCHHHHHHHHHHHHHcCCceEEEe
Confidence 668888999999999999999975 5554
No 99
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.45 E-value=1.8e-12 Score=123.61 Aligned_cols=190 Identities=13% Similarity=0.141 Sum_probs=139.6
Q ss_pred EEEeeCcccHHHHHHHhccccCCCCEEEEecCCCCHH---HHHHhhCC--CceEEEcCCcHH-----------hhcCCce
Q 024016 75 VVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLK---DLQEWTGH--SRFIRVMPNTPS-----------AVGEAAT 138 (274)
Q Consensus 75 Iil~v~~~~~~~v~~~i~~~l~~~~~vis~~~g~~~~---~l~~~~~~--~~~~~~~p~~~~-----------~~~~g~~ 138 (274)
||+|+|+..+.+++.++.++++++++|.++ ++++.. .+.+.++. .+++..||..-. .+.....
T Consensus 1 vila~Pv~~~~~~~~~~~~~~~~~~~vtDv-~SvK~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~Lf~~~~~ 79 (673)
T PRK11861 1 VLLAAPVAQTGPLLARIAPFLDASTIVTDA-GSTKSDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADLYVGRNV 79 (673)
T ss_pred CEEEcCHHHHHHHHHHHhhhCCCCcEEEec-CcccHHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhHhCCCeE
Confidence 689999999999999999999888766655 556644 33444542 357888885311 1223345
Q ss_pred EEecCCCCCHHHHHHHHHHhhhcCCe-EEcCccchhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 024016 139 VMSLGGTATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLG 217 (274)
Q Consensus 139 ~i~~~~~~~~~~~~~v~~ll~~~g~~-~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~~~ 217 (274)
++++.+..+++.+++++++++.+|.. +.+++++||.++++++|.|++++.. ++....+.- +.+....+..++|++
T Consensus 80 il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~~~~HD~~~A~iShlpH~~a~~---l~~~~~~~~-~~~~~~~~a~~gfrd 155 (673)
T PRK11861 80 VLCALPENAPDALARVEAMWRAARADVRAMSAEQHDRVFAAVSHLPHVLSFA---LVEQILGES-DAELKFSYAAGGFRD 155 (673)
T ss_pred EEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHHHHHHHHhhHHHHHHHH---HHHHHhhcc-ChhHHHHhcccchhc
Confidence 67777777888999999999999965 8899999999999999999987653 333332221 345556899999999
Q ss_pred HHHHHHhcCCChHHHHHhcCCCCchHHHHHHHHHhC--CHHHHHHH----HHHHHHHHHhh
Q 024016 218 AASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKS--GFRGILMN----AVVAAAKRSRE 272 (274)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~g~t~~~l~~l~~~--~~~~~~~~----a~~~~~~r~~~ 272 (274)
++|++. .+|.+|.+.+.++.....+.|+.+.+. .++..+.+ .+.+.++++++
T Consensus 156 ~tRia~---~~p~lw~di~~~N~~~i~~~l~~~~~~l~~~~~~l~~~d~~~l~~~~~~~~~ 213 (673)
T PRK11861 156 FTRIAA---SSPEMWRDVCLANRAALLDELDAYTAVLARLRAAIDAGDGAALEAVFARSRA 213 (673)
T ss_pred cccccc---CCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999874 689999999999988887777777664 45555543 56666666654
No 100
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=99.40 E-value=3.5e-12 Score=99.31 Aligned_cols=108 Identities=21% Similarity=0.333 Sum_probs=87.6
Q ss_pred EEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCc--------------hhhccCCCEEEEe
Q 024016 13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDN--------------NAVVEYSDVVVFS 78 (274)
Q Consensus 13 IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~--------------~~~~~~aDiIil~ 78 (274)
|.|+|+|.||..+|..|.+.|+ +|+++ .|++ +.+.+.+.|+++.... .+....+|+||+|
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~----~V~l~-~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~ 74 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGH----DVTLV-SRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVA 74 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTC----EEEEE-ESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-
T ss_pred CEEECcCHHHHHHHHHHHHCCC----ceEEE-Eccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEE
Confidence 7899999999999999999999 99999 8988 7888877665442211 1346789999999
Q ss_pred eCcccHHHHHHHhccccCCCCEEEEecCCCCH-HHHHHhhCCCceEEEc
Q 024016 79 VKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKL-KDLQEWTGHSRFIRVM 126 (274)
Q Consensus 79 v~~~~~~~v~~~i~~~l~~~~~vis~~~g~~~-~~l~~~~~~~~~~~~~ 126 (274)
||..+.+++++.+.+.+.+++.|+++.+|+.. +.+++.++..+++..+
T Consensus 75 vKa~~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~~~~~~~~v~~g~ 123 (151)
T PF02558_consen 75 VKAYQLEQALQSLKPYLDPNTTIVSLQNGMGNEEVLAEYFPRPRVLGGV 123 (151)
T ss_dssp SSGGGHHHHHHHHCTGEETTEEEEEESSSSSHHHHHHCHSTGSGEEEEE
T ss_pred ecccchHHHHHHHhhccCCCcEEEEEeCCCCcHHHHHHHcCCCcEEEEE
Confidence 99999999999999999999899999999995 5677777644555443
No 101
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=99.32 E-value=1.9e-10 Score=104.91 Aligned_cols=195 Identities=16% Similarity=0.143 Sum_probs=117.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCC--CCCCCcEEEEeCCCHHHHHHHHHc-----------------C--ceeccCchhh
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSG--VLPPDRICTAVHSNLKRRDAFESI-----------------G--VKVLSDNNAV 68 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g--~~~~~~v~v~~~r~~~~~~~l~~~-----------------g--~~~~~~~~~~ 68 (274)
+|||+|||+|.+|..+|..|.+.| + +|+.+ |.++++.+.+.+- + ...+++..++
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~----~V~gv-D~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~ 75 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALKCPDI----EVVVV-DISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKH 75 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCC----eEEEE-ECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHH
Confidence 479999999999999999999885 5 79999 9999998876531 1 3345556677
Q ss_pred ccCCCEEEEeeC-cc--------------cHHHHHHHhccccCCCCEEEE--ecCCCCHHHHHHhhC----CCc-eEEEc
Q 024016 69 VEYSDVVVFSVK-PQ--------------VVKDVAMQIRPLLSRKKLLVS--VAAGVKLKDLQEWTG----HSR-FIRVM 126 (274)
Q Consensus 69 ~~~aDiIil~v~-~~--------------~~~~v~~~i~~~l~~~~~vis--~~~g~~~~~l~~~~~----~~~-~~~~~ 126 (274)
+++||++|+||| |. .+.++++.|.++++++++||- +..+-+.+.+.+.+. +.. .+.+.
T Consensus 76 i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~~g~~f~v~~~ 155 (473)
T PLN02353 76 VAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINFQILSN 155 (473)
T ss_pred HhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhCCCCCeEEEEC
Confidence 899999999995 22 467888889999999988772 222222344444332 111 12233
Q ss_pred CC-----cHHhhcCCc-eEEecCCC--CCHHHHHHHHHHhhhcC--CeEEcCccchhhHHHhhcchHHHH---HHHHHHH
Q 024016 127 PN-----TPSAVGEAA-TVMSLGGT--ATEEDGELIGKLFGSVG--KIWRADEKLFDAITGLSGSGPAYI---FLAIEAL 193 (274)
Q Consensus 127 p~-----~~~~~~~g~-~~i~~~~~--~~~~~~~~v~~ll~~~g--~~~~~~e~~~~~~~a~~~~~~~~~---~~~~~~l 193 (274)
|. ....--.-. -++..+.+ ..++..+.+.++++.+- ..+....-....++.+.. +.|. ..+++.+
T Consensus 156 PErl~~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~~AE~~K~~e--N~~ra~~Iaf~NEl 233 (473)
T PLN02353 156 PEFLAEGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWSAELSKLAA--NAFLAQRISSVNAM 233 (473)
T ss_pred CCccCCCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 32 111111111 12333321 11446778888888763 233332222222333322 3332 3456667
Q ss_pred HHHHHHcCCCHHHHHHHH
Q 024016 194 ADGGVAAGLPRELALGLA 211 (274)
Q Consensus 194 ~e~~~~~Gl~~~~~~~~~ 211 (274)
+..+.+.|+|..+..+.+
T Consensus 234 a~lce~~giD~~eV~~~~ 251 (473)
T PLN02353 234 SALCEATGADVSQVSHAV 251 (473)
T ss_pred HHHHHHhCCCHHHHHHHh
Confidence 777888999987765544
No 102
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.30 E-value=2.5e-10 Score=99.26 Aligned_cols=181 Identities=14% Similarity=0.107 Sum_probs=122.6
Q ss_pred HHHHHHHHHHhCCCCCCCcEEEEeCCCHHH-------HHH-----------HHHcC-------------ceeccC--chh
Q 024016 21 MAESIAKGVAKSGVLPPDRICTAVHSNLKR-------RDA-----------FESIG-------------VKVLSD--NNA 67 (274)
Q Consensus 21 mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~-------~~~-----------l~~~g-------------~~~~~~--~~~ 67 (274)
||..||..+..+|+ +|.+| |++++. .+. +.+.| ++..++ ..+
T Consensus 1 MG~giA~~~a~~G~----~V~l~-d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 75 (314)
T PRK08269 1 MGQGIALAFAFAGH----DVTLI-DFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAAD 75 (314)
T ss_pred CcHHHHHHHHhCCC----eEEEE-eCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHH
Confidence 89999999999999 99999 999842 111 11111 233333 457
Q ss_pred hccCCCEEEEeeCcc-cH-HHHHHHhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHhhcCCceEEecCC
Q 024016 68 VVEYSDVVVFSVKPQ-VV-KDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSLGG 144 (274)
Q Consensus 68 ~~~~aDiIil~v~~~-~~-~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~i~~~~ 144 (274)
++++||+||.|++.+ .+ ..++.++....++++++.|.++++++..+++.+. ..+++..|...|..... ..-+..++
T Consensus 76 a~~~aD~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS~~~~~~la~~~~~p~r~~g~Hf~~Pp~~~~-lvEVv~g~ 154 (314)
T PRK08269 76 ALADADLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLVTDLQRHVAHPERFLNAHWLNPAYLMP-LVEVSPSD 154 (314)
T ss_pred HhccCCEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEccccCCHHHHHhhcCCcccEEEEecCCccccCc-eEEEeCCC
Confidence 789999999999743 34 4566788888899999999999999999988775 34788888766654432 23355677
Q ss_pred CCCHHHHHHHHHHhhhcCCe-EEcCccchhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 024016 145 TATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQT 214 (274)
Q Consensus 145 ~~~~~~~~~v~~ll~~~g~~-~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~ 214 (274)
.++++.++.+.++++.+|+. +++++.. ..+. . -.+...+.+++. .+.+.++++++...++..+
T Consensus 155 ~t~~e~~~~~~~ll~~lGk~~v~v~d~~-Gfi~--n---ri~~~~l~EAl~-l~e~g~~~~e~iD~a~~~g 218 (314)
T PRK08269 155 ATDPAVVDRLAALLERIGKVPVVCGPSP-GYIV--P---RIQALAMNEAAR-MVEEGVASAEDIDKAIRTG 218 (314)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEecCCC-Ccch--H---HHHHHHHHHHHH-HHHhCCCCHHHHHHHHHhC
Confidence 88999999999999999975 6666432 1100 0 011122233322 2346668888877766533
No 103
>COG5495 Uncharacterized conserved protein [Function unknown]
Probab=99.23 E-value=8.2e-10 Score=88.71 Aligned_cols=245 Identities=13% Similarity=0.068 Sum_probs=146.1
Q ss_pred CCCCCCCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEE-EEeCCCHHHHHHHHH-cCceeccCchhhccCCCEEEEe
Q 024016 1 MDAFPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRIC-TAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFS 78 (274)
Q Consensus 1 ~~~~~~~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~-v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDiIil~ 78 (274)
|.+++.....+.++|||.|+.|.+...+-.+.++ ... +. .|++++++.|.+ .+... .+.+...+-.+++|.-
T Consensus 1 ~~s~~~~~~~v~~~~vgtgrl~ra~~~ra~h~~~----~cs~i~-srS~~~a~~LaE~~~a~p-~d~~~~ael~~~vfv~ 74 (289)
T COG5495 1 MVSDGLRPARVVVGIVGTGRLGRAALLRADHVVV----ACSAIS-SRSRDRAQNLAETYVAPP-LDVAKSAELLLLVFVD 74 (289)
T ss_pred CcCcCccceeeEEEEeecchHHHHHHHHhcchhe----eehhhh-hcCHHHHhhchhccCCCc-cchhhChhhhceEEec
Confidence 5566666667899999999999996555555554 333 34 889998888877 33322 2333344556888888
Q ss_pred eCcccHHHHHHHhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCc-----HHhhcCCceEEecCCCCCHHHHH
Q 024016 79 VKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNT-----PSAVGEAATVMSLGGTATEEDGE 152 (274)
Q Consensus 79 v~~~~~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~-----~~~~~~g~~~i~~~~~~~~~~~~ 152 (274)
+|+..+..+..... ..||++++++++.-+.+.+.+.-. ++.-..+||+. +.....-.-.+++....|+-...
T Consensus 75 vpd~~~s~vaa~~~--~rpg~iv~HcSga~~~~il~~~gr~g~~~asiHP~f~Fsgl~edl~rl~d~~~~i~eaD~~g~a 152 (289)
T COG5495 75 VPDALYSGVAATSL--NRPGTIVAHCSGANGSGILAPLGRQGCIPASIHPAFSFSGLDEDLSRLKDTIFGITEADDVGYA 152 (289)
T ss_pred chHHHHHHHHHhcc--cCCCeEEEEccCCCchhhhhhhhhcCCcceeecccccccCCHHHHHhCcccEEEeecccccccH
Confidence 88876666554433 469999999987666666655332 34445667753 22111111111222233555677
Q ss_pred HHHHHhhhcCCe-EEcCccc---hhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCC
Q 024016 153 LIGKLFGSVGKI-WRADEKL---FDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKH 228 (274)
Q Consensus 153 ~v~~ll~~~g~~-~~~~e~~---~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (274)
.++.+...+|.. +.+.|+. ++......+ +|+-..+.--.+..+..|+|..+..--+.+.++|+.....+.|..
T Consensus 153 i~q~la~emgg~~f~V~~~~r~lYHaaa~~as---nf~v~~l~~a~~i~~aag~Dq~e~iv~~~pL~~g~~~n~~qrg~a 229 (289)
T COG5495 153 IVQSLALEMGGEPFCVREEARILYHAAAVHAS---NFIVTVLADALEIYRAAGDDQPELIVEVGPLARGALENTLQRGQA 229 (289)
T ss_pred HHHHHHHHhCCCceeechhHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHhcCCCcceeeeehHHHHHHHHHHHHhhhh
Confidence 889999999964 6666653 455444433 233222222223345788886665444666778887777655421
Q ss_pred hHHHHHhcCCC-CchHHHHHHHHHhCCHHH
Q 024016 229 PGQLKDDVASP-GGTTIAGIHELEKSGFRG 257 (274)
Q Consensus 229 ~~~~~~~~~~~-~g~t~~~l~~l~~~~~~~ 257 (274)
..+...+... ++..+..+..|++-+-..
T Consensus 230 -~aLTgpVaRGD~~vve~hl~al~~ig~~~ 258 (289)
T COG5495 230 -CALTGPVARGDWQVVEEHLRALEKIGANL 258 (289)
T ss_pred -hcccCCcccCcHHHHHHHHHHHHHhhHHH
Confidence 1343444332 257788888888865443
No 104
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.22 E-value=3.4e-09 Score=92.29 Aligned_cols=244 Identities=18% Similarity=0.241 Sum_probs=142.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-------------------cC-ceeccCchhhcc
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-------------------IG-VKVLSDNNAVVE 70 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-------------------~g-~~~~~~~~~~~~ 70 (274)
|||.|||+|-+|...+..|.+.|| +|+.. |.++++.+.+.+ .| ++.++|..++++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GH----eVv~v-Did~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~ 75 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGH----EVVCV-DIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVK 75 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCC----eEEEE-eCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHh
Confidence 799999999999999999999999 99999 999999877653 12 456677888899
Q ss_pred CCCEEEEeeC--cc--------cHHHHHHHhccccCCCCEEEEecCCCC---HHHHHHhhCC---CceEEEcCCcHHhhc
Q 024016 71 YSDVVVFSVK--PQ--------VVKDVAMQIRPLLSRKKLLVSVAAGVK---LKDLQEWTGH---SRFIRVMPNTPSAVG 134 (274)
Q Consensus 71 ~aDiIil~v~--~~--------~~~~v~~~i~~~l~~~~~vis~~~g~~---~~~l~~~~~~---~~~~~~~p~~~~~~~ 134 (274)
++|++|+||+ ++ .++.+.+++.++++..++||. -++++ .+.+++.+.. .+-.... ..|.-.+
T Consensus 76 ~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~-KSTVPvGt~~~v~~~i~~~~~~~~f~v~-~NPEFLR 153 (414)
T COG1004 76 DADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVI-KSTVPVGTTEEVRAKIREENSGKDFEVA-SNPEFLR 153 (414)
T ss_pred cCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEE-cCCCCCCchHHHHHHHHhhcccCCceEe-cChHHhc
Confidence 9999999994 32 367778888888876666662 23333 3455544321 1101111 2344444
Q ss_pred CCceE--------EecCCCCCHHHHHHHHHHhhhc---CCe-EEcCccchhhHHHhhcchHHHHHH---HHHHHHHHHHH
Q 024016 135 EAATV--------MSLGGTATEEDGELIGKLFGSV---GKI-WRADEKLFDAITGLSGSGPAYIFL---AIEALADGGVA 199 (274)
Q Consensus 135 ~g~~~--------i~~~~~~~~~~~~~v~~ll~~~---g~~-~~~~e~~~~~~~a~~~~~~~~~~~---~~~~l~e~~~~ 199 (274)
+|..+ ++.|.. ++.+.+.++++++.+ ... ++.+- .-..+..+. .++|+++ |++-+.+.+++
T Consensus 154 EG~Av~D~~~PdRIViG~~-~~~a~~~~~ely~~~~~~~~p~l~t~~-~~AE~IKya--aNafLAtKIsFiNEia~ice~ 229 (414)
T COG1004 154 EGSAVYDFLYPDRIVIGVR-SERAAAVLRELYAPFLRQDVPILFTDL-REAELIKYA--ANAFLATKISFINEIANICEK 229 (414)
T ss_pred CcchhhhccCCCeEEEccC-ChhHHHHHHHHHhhhhhcCCCEEEecc-hHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 55321 222322 334566777777654 333 33321 111222222 2556543 56667777889
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Q 024016 200 AGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAAAKRSR 271 (274)
Q Consensus 200 ~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~l~~l~~~~~~~~~~~a~~~~~~r~~ 271 (274)
.|+|.++..+-+..--+=....+ +.|.. |-.- |-|. -|.+-+...++.+....+.+++.+..++-+
T Consensus 230 ~g~D~~~V~~gIGlD~RIG~~fl-~aG~G---yGGs-CfPK-D~~AL~~~a~~~~~~~~ll~avv~vN~~qk 295 (414)
T COG1004 230 VGADVKQVAEGIGLDPRIGNHFL-NAGFG---YGGS-CFPK-DTKALIANAEELGYDPNLLEAVVEVNERRK 295 (414)
T ss_pred hCCCHHHHHHHcCCCchhhHhhC-CCCCC---CCCc-CCcH-hHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 99987765544321111111111 11100 0000 1111 355667777777877778887777666543
No 105
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=99.20 E-value=7.6e-11 Score=94.66 Aligned_cols=94 Identities=21% Similarity=0.358 Sum_probs=67.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH--------------------cCceeccCchhhcc
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES--------------------IGVKVLSDNNAVVE 70 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~--------------------~g~~~~~~~~~~~~ 70 (274)
|||+|||+|.+|..+|..|.++|| +|+.+ |.++++.+.+.+ .....+++..+++.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~----~V~g~-D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~ 75 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGH----QVIGV-DIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIK 75 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTS----EEEEE--S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHH
T ss_pred CEEEEECCCcchHHHHHHHHhCCC----EEEEE-eCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhh
Confidence 799999999999999999999999 99999 999999887763 12345566777789
Q ss_pred CCCEEEEeeC-cc---------cHHHHHHHhccccCCCCEEEEecCCCCH
Q 024016 71 YSDVVVFSVK-PQ---------VVKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (274)
Q Consensus 71 ~aDiIil~v~-~~---------~~~~v~~~i~~~l~~~~~vis~~~g~~~ 110 (274)
++|++|+||| |. .+.++++.|.+.++++++|| .-+++++
T Consensus 76 ~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV-~~STvpp 124 (185)
T PF03721_consen 76 DADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVV-IESTVPP 124 (185)
T ss_dssp H-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEE-ESSSSST
T ss_pred ccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEE-EccEEEE
Confidence 9999999996 21 26788888999999988877 3344443
No 106
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=99.18 E-value=2.7e-10 Score=99.66 Aligned_cols=104 Identities=17% Similarity=0.246 Sum_probs=79.9
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCccc-H
Q 024016 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQV-V 84 (274)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~-~ 84 (274)
.....++|||||+|+||+++|+.|...|+ +|.+| +|+++..... .....+..+++++||+|++++|... .
T Consensus 142 ~~l~g~~VgIIG~G~IG~~vA~~L~~~G~----~V~~~-d~~~~~~~~~----~~~~~~l~ell~~aDiVil~lP~t~~t 212 (330)
T PRK12480 142 KPVKNMTVAIIGTGRIGAATAKIYAGFGA----TITAY-DAYPNKDLDF----LTYKDSVKEAIKDADIISLHVPANKES 212 (330)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHhCCC----EEEEE-eCChhHhhhh----hhccCCHHHHHhcCCEEEEeCCCcHHH
Confidence 44566899999999999999999999998 99999 9987653322 2234577889999999999998543 4
Q ss_pred HHHH-HHhccccCCCCEEEEecCCCC--HHHHHHhhC
Q 024016 85 KDVA-MQIRPLLSRKKLLVSVAAGVK--LKDLQEWTG 118 (274)
Q Consensus 85 ~~v~-~~i~~~l~~~~~vis~~~g~~--~~~l~~~~~ 118 (274)
..++ .++.+.++++.++|+++-|.- .+.+.+.+.
T Consensus 213 ~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~ 249 (330)
T PRK12480 213 YHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVN 249 (330)
T ss_pred HHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHH
Confidence 4444 567778899999999886643 456666665
No 107
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=99.14 E-value=2.2e-10 Score=91.79 Aligned_cols=155 Identities=18% Similarity=0.218 Sum_probs=111.5
Q ss_pred CCCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-----------c----------------
Q 024016 5 PIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----------I---------------- 57 (274)
Q Consensus 5 ~~~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-----------~---------------- 57 (274)
.+...++.|+|||+|.||+.||+--..+|+ +|.++ +++++.+.+..+ .
T Consensus 6 ~~~~~~~~V~ivGaG~MGSGIAQv~a~sg~----~V~l~-d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~ 80 (298)
T KOG2304|consen 6 ANMAEIKNVAIVGAGQMGSGIAQVAATSGL----NVWLV-DANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDT 80 (298)
T ss_pred cccccccceEEEcccccchhHHHHHHhcCC----ceEEe-cCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHH
Confidence 344455789999999999999999999999 99999 999876544332 0
Q ss_pred --CceeccCchhhccCCCEEEEee--CcccHHHHHHHhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHh
Q 024016 58 --GVKVLSDNNAVVEYSDVVVFSV--KPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSA 132 (274)
Q Consensus 58 --g~~~~~~~~~~~~~aDiIil~v--~~~~~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~ 132 (274)
-++.+++..+++.++|+||-++ .-+.-++++.++....++.+++.+.++++.+..+...+. ..++.+.|=..|..
T Consensus 81 l~ri~~~tnv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl~lt~ia~~~~~~srf~GlHFfNPvP 160 (298)
T KOG2304|consen 81 LDRIKTSTNVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSLSLTDIASATQRPSRFAGLHFFNPVP 160 (298)
T ss_pred HHHHHHcCCHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccceeHHHHHhhccChhhhceeeccCCch
Confidence 0123456677788899999887 234456777888777788888888888888888876664 24555555333333
Q ss_pred hcCCceEEecCCCCCHHHHHHHHHHhhhcCCeE
Q 024016 133 VGEAATVMSLGGTATEEDGELIGKLFGSVGKIW 165 (274)
Q Consensus 133 ~~~g~~~i~~~~~~~~~~~~~v~~ll~~~g~~~ 165 (274)
+-+-+. +..++..+++.+..+..+-+.+|+..
T Consensus 161 vMKLvE-Vir~~~TS~eTf~~l~~f~k~~gKtt 192 (298)
T KOG2304|consen 161 VMKLVE-VIRTDDTSDETFNALVDFGKAVGKTT 192 (298)
T ss_pred hHHHhh-hhcCCCCCHHHHHHHHHHHHHhCCCc
Confidence 322222 33456678999999999999999863
No 108
>PRK07574 formate dehydrogenase; Provisional
Probab=99.14 E-value=4.1e-10 Score=99.94 Aligned_cols=107 Identities=15% Similarity=0.226 Sum_probs=83.2
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccHH
Q 024016 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVVK 85 (274)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~~ 85 (274)
....++|||||+|+||+.++++|..-|. +|.+| +|++...+.....|++...+..++++.||+|++++| ....+
T Consensus 189 ~L~gktVGIvG~G~IG~~vA~~l~~fG~----~V~~~-dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~ 263 (385)
T PRK07574 189 DLEGMTVGIVGAGRIGLAVLRRLKPFDV----KLHYT-DRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETE 263 (385)
T ss_pred ecCCCEEEEECCCHHHHHHHHHHHhCCC----EEEEE-CCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHH
Confidence 3456899999999999999999999998 99999 998643333334677666788999999999999998 45577
Q ss_pred HHHH-HhccccCCCCEEEEecCCCC--HHHHHHhhC
Q 024016 86 DVAM-QIRPLLSRKKLLVSVAAGVK--LKDLQEWTG 118 (274)
Q Consensus 86 ~v~~-~i~~~l~~~~~vis~~~g~~--~~~l~~~~~ 118 (274)
.++. +....+++|.++|++.-|-- .+.+.+.+.
T Consensus 264 ~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~ 299 (385)
T PRK07574 264 HLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALE 299 (385)
T ss_pred HHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHH
Confidence 7774 46677899999998875533 455655554
No 109
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=99.13 E-value=1.3e-10 Score=90.79 Aligned_cols=93 Identities=17% Similarity=0.283 Sum_probs=69.2
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCC-CCCCCcEEEEeCCCHHHHHHHHH-cCc----eeccCchhhccCCCEEEEeeCc
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSG-VLPPDRICTAVHSNLKRRDAFES-IGV----KVLSDNNAVVEYSDVVVFSVKP 81 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g-~~~~~~v~v~~~r~~~~~~~l~~-~g~----~~~~~~~~~~~~aDiIil~v~~ 81 (274)
.+.++|+|||+|.||.++++.|.+.| + +|++| +|++++.+.+.+ .+. ....+..+.++++|+||.|+|+
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~----~v~v~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~ 91 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGAA----KIVIV-NRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPV 91 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCC----EEEEE-cCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCC
Confidence 45679999999999999999999986 5 89999 999998887765 342 1334666778899999999988
Q ss_pred ccH--HHHHHHhccccCCCCEEEEecC
Q 024016 82 QVV--KDVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 82 ~~~--~~v~~~i~~~l~~~~~vis~~~ 106 (274)
... .++... ...+++++++++++.
T Consensus 92 ~~~~~~~~~~~-~~~~~~~~~v~D~~~ 117 (155)
T cd01065 92 GMKPGDELPLP-PSLLKPGGVVYDVVY 117 (155)
T ss_pred CCCCCCCCCCC-HHHcCCCCEEEEcCc
Confidence 764 222111 123578888887743
No 110
>PLN03139 formate dehydrogenase; Provisional
Probab=99.12 E-value=6e-10 Score=98.83 Aligned_cols=107 Identities=16% Similarity=0.205 Sum_probs=83.9
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccHH
Q 024016 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVVK 85 (274)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~~ 85 (274)
....++|||||+|+||..+++.|..-|. +|.+| +|++...+...+.|+....+..+++++||+|++++| ....+
T Consensus 196 ~L~gktVGIVG~G~IG~~vA~~L~afG~----~V~~~-d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~ 270 (386)
T PLN03139 196 DLEGKTVGTVGAGRIGRLLLQRLKPFNC----NLLYH-DRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTR 270 (386)
T ss_pred CCCCCEEEEEeecHHHHHHHHHHHHCCC----EEEEE-CCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHH
Confidence 4566899999999999999999999888 99999 988644444445677666688999999999999998 45677
Q ss_pred HHH-HHhccccCCCCEEEEecCCC--CHHHHHHhhC
Q 024016 86 DVA-MQIRPLLSRKKLLVSVAAGV--KLKDLQEWTG 118 (274)
Q Consensus 86 ~v~-~~i~~~l~~~~~vis~~~g~--~~~~l~~~~~ 118 (274)
.++ .+....+++|.++|++.-|- ..+.+.+.+.
T Consensus 271 ~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~ 306 (386)
T PLN03139 271 GMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACS 306 (386)
T ss_pred HHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHH
Confidence 777 35667789999999887543 3456666664
No 111
>PRK13243 glyoxylate reductase; Reviewed
Probab=99.11 E-value=8e-10 Score=96.91 Aligned_cols=106 Identities=21% Similarity=0.244 Sum_probs=80.9
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCc-ccH
Q 024016 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP-QVV 84 (274)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~-~~~ 84 (274)
.....++|||||+|+||+.+|+.|...|. +|.+| +|++... .....+... .+..+++++||+|++++|. ...
T Consensus 146 ~~L~gktvgIiG~G~IG~~vA~~l~~~G~----~V~~~-d~~~~~~-~~~~~~~~~-~~l~ell~~aDiV~l~lP~t~~T 218 (333)
T PRK13243 146 YDVYGKTIGIIGFGRIGQAVARRAKGFGM----RILYY-SRTRKPE-AEKELGAEY-RPLEELLRESDFVSLHVPLTKET 218 (333)
T ss_pred cCCCCCEEEEECcCHHHHHHHHHHHHCCC----EEEEE-CCCCChh-hHHHcCCEe-cCHHHHHhhCCEEEEeCCCChHH
Confidence 34567899999999999999999999998 99999 9986543 222345554 4788899999999999984 446
Q ss_pred HHHH-HHhccccCCCCEEEEecCCC--CHHHHHHhhC
Q 024016 85 KDVA-MQIRPLLSRKKLLVSVAAGV--KLKDLQEWTG 118 (274)
Q Consensus 85 ~~v~-~~i~~~l~~~~~vis~~~g~--~~~~l~~~~~ 118 (274)
+.++ .+....++++.++|+++-|- ..+.+.+.+.
T Consensus 219 ~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~ 255 (333)
T PRK13243 219 YHMINEERLKLMKPTAILVNTARGKVVDTKALVKALK 255 (333)
T ss_pred hhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHH
Confidence 6666 45667789999999887553 3456666665
No 112
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=99.09 E-value=5.2e-08 Score=84.00 Aligned_cols=154 Identities=16% Similarity=0.251 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceec--------------cCchhhccCCCEEEEeeCcccHH
Q 024016 20 KMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL--------------SDNNAVVEYSDVVVFSVKPQVVK 85 (274)
Q Consensus 20 ~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~--------------~~~~~~~~~aDiIil~v~~~~~~ 85 (274)
.||+.++..|.++|+ +|+++ .|+ ++.+.+.+.|+.+. +++.+ ...+|+||+|||..+++
T Consensus 1 aiG~~~a~~L~~~G~----~V~l~-~r~-~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~-~~~~D~iiv~vKs~~~~ 73 (293)
T TIGR00745 1 AVGSLYGAYLARAGH----DVTLL-ARG-EQLEALNQEGLRIVSLGGEFQFRPVSAATSPEE-LPPADLVIITVKAYQTE 73 (293)
T ss_pred CchHHHHHHHHhCCC----cEEEE-ecH-HHHHHHHHCCcEEEecCCcEEEcccccccChhh-cCCCCEEEEeccchhHH
Confidence 379999999999999 99999 997 66777766554221 12233 56799999999999999
Q ss_pred HHHHHhccccCCCCEEEEecCCCCH-HHHHHhhCCCceEEEcCC------cHH---hhcCCceEEecCCCCCHHHHHHHH
Q 024016 86 DVAMQIRPLLSRKKLLVSVAAGVKL-KDLQEWTGHSRFIRVMPN------TPS---AVGEAATVMSLGGTATEEDGELIG 155 (274)
Q Consensus 86 ~v~~~i~~~l~~~~~vis~~~g~~~-~~l~~~~~~~~~~~~~p~------~~~---~~~~g~~~i~~~~~~~~~~~~~v~ 155 (274)
++++.+.+.+.++++|+++.+|+.. +.+.+.++..+++..... .|. +.+.+...+...+. ..+..+.+.
T Consensus 74 ~~l~~l~~~l~~~~~iv~~qNG~g~~~~l~~~~~~~~v~~g~~~~~~~~~~pg~v~~~~~~~~~iG~~~~-~~~~~~~l~ 152 (293)
T TIGR00745 74 EAAALLLPLIGKNTKVLFLQNGLGHEERLRELLPARRILGGVVTHGAVREEPGVVHHAGLGATKIGDYVG-ENEAVEALA 152 (293)
T ss_pred HHHHHhHhhcCCCCEEEEccCCCCCHHHHHHHhCccCEEEEEEEEeeEEcCCcEEEEeccccEEEecCCC-chHHHHHHH
Confidence 9999999999999999999999875 556766663334332211 111 11223222222111 224556777
Q ss_pred HHhhhcCCeEEcCcc-------------chhhHHHhhcc
Q 024016 156 KLFGSVGKIWRADEK-------------LFDAITGLSGS 181 (274)
Q Consensus 156 ~ll~~~g~~~~~~e~-------------~~~~~~a~~~~ 181 (274)
++|+..|......++ .++.++++.++
T Consensus 153 ~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~ 191 (293)
T TIGR00745 153 ELLNEAGIPAELHGDILAAIWKKLLVNAAINPLTALLDC 191 (293)
T ss_pred HHHHhCCCCCEecchHHHHHHHHHhheechhHHHHHHCC
Confidence 788777754333332 24566666664
No 113
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=99.05 E-value=1.1e-09 Score=93.29 Aligned_cols=89 Identities=15% Similarity=0.268 Sum_probs=69.5
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhC--CCCCCCcEE-EEeCCCHHHHHHHHH-cCc-eeccCchhhccCCCEEEEeeCcc
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKS--GVLPPDRIC-TAVHSNLKRRDAFES-IGV-KVLSDNNAVVEYSDVVVFSVKPQ 82 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~--g~~~~~~v~-v~~~r~~~~~~~l~~-~g~-~~~~~~~~~~~~aDiIil~v~~~ 82 (274)
|+.+||||||+|+||..+++.|.+. ++ ++. +| +|++++.+.+.+ .|. ..+++.++++.++|+|++|+|++
T Consensus 4 m~~irIGIIG~G~IG~~~a~~L~~~~~~~----el~aV~-dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~ 78 (271)
T PRK13302 4 RPELRVAIAGLGAIGKAIAQALDRGLPGL----TLSAVA-VRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPAS 78 (271)
T ss_pred CCeeEEEEECccHHHHHHHHHHHhcCCCe----EEEEEE-CCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcH
Confidence 4568999999999999999999863 55 665 67 999998887766 453 45678888888999999999998
Q ss_pred cHHHHHHHhccccCCCCEEEEe
Q 024016 83 VVKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 83 ~~~~v~~~i~~~l~~~~~vis~ 104 (274)
...++..+.. ..|+.++..
T Consensus 79 ~h~e~~~~aL---~aGk~Vi~~ 97 (271)
T PRK13302 79 VLRAIVEPVL---AAGKKAIVL 97 (271)
T ss_pred HHHHHHHHHH---HcCCcEEEe
Confidence 8888776654 345545544
No 114
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=99.05 E-value=1.3e-07 Score=77.45 Aligned_cols=156 Identities=21% Similarity=0.214 Sum_probs=110.3
Q ss_pred CCeEEEEcccHH--------------------HHHHHHHHHhCCCCCCCcEEEEeCCCHH-----HHHHHHHcCceeccC
Q 024016 10 SFILGFIGAGKM--------------------AESIAKGVAKSGVLPPDRICTAVHSNLK-----RRDAFESIGVKVLSD 64 (274)
Q Consensus 10 ~~~IgiIG~G~m--------------------G~~~a~~L~~~g~~~~~~v~v~~~r~~~-----~~~~l~~~g~~~~~~ 64 (274)
+|||.+.|+||- |+.||-.+.++|| +|.+. +.+.+ ..+.+...|+++.+|
T Consensus 1 ~mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeAGH----DVVLa-ePn~d~~dd~~w~~vedAGV~vv~d 75 (340)
T COG4007 1 MMKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEAGH----DVVLA-EPNRDIMDDEHWKRVEDAGVEVVSD 75 (340)
T ss_pred CceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHcCC----cEEee-cCCccccCHHHHHHHHhcCcEEecC
Confidence 478999999983 7889999999999 99999 77653 355566689999999
Q ss_pred chhhccCCCEEEEeeCcc-cHHHHHHHhccccCCCCEEEEecCCCCHH----HHHHhhC----CCceEEEcCCc-HHhhc
Q 024016 65 NNAVVEYSDVVVFSVKPQ-VVKDVAMQIRPLLSRKKLLVSVAAGVKLK----DLQEWTG----HSRFIRVMPNT-PSAVG 134 (274)
Q Consensus 65 ~~~~~~~aDiIil~v~~~-~~~~v~~~i~~~l~~~~~vis~~~g~~~~----~l~~~~~----~~~~~~~~p~~-~~~~~ 134 (274)
..++++++.+.++.+|-. ..-.+.++|.++++.|.++..++. +++- .++..+. +..+...||.. |..-.
T Consensus 76 D~eaa~~~Ei~VLFTPFGk~T~~Iarei~~hvpEgAVicnTCT-~sp~vLy~~LE~~Lr~kR~dVGvssmHPAgvPGtp~ 154 (340)
T COG4007 76 DAEAAEHGEIHVLFTPFGKATFGIAREILEHVPEGAVICNTCT-VSPVVLYYSLEGELRTKREDVGVSSMHPAGVPGTPQ 154 (340)
T ss_pred chhhhhcceEEEEecccchhhHHHHHHHHhhCcCCcEeccccc-CchhHHHHHhhhhhcCchhhcCccccCCCCCCCCCC
Confidence 999999999999999976 777888999999999987775543 3322 2333332 23345555531 22223
Q ss_pred CCceEEec-C----CCCCHHHHHHHHHHhhhcCCe-EEcCccc
Q 024016 135 EAATVMSL-G----GTATEEDGELIGKLFGSVGKI-WRADEKL 171 (274)
Q Consensus 135 ~g~~~i~~-~----~~~~~~~~~~v~~ll~~~g~~-~~~~e~~ 171 (274)
++..++.. + +-.++++.+++.++.+..|+. ++++.+.
T Consensus 155 h~~yviagr~t~g~elATeEQi~r~velaes~Gk~~yv~padv 197 (340)
T COG4007 155 HGHYVIAGRSTEGKELATEEQIERCVELAESTGKEVYVLPADV 197 (340)
T ss_pred CceEEEeccCCCceeeccHHHHHHHHHHHHhcCCceEecCHHH
Confidence 34333331 0 113688999999999999986 6666543
No 115
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.04 E-value=6e-08 Score=82.85 Aligned_cols=194 Identities=17% Similarity=0.241 Sum_probs=120.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH---cCce--eccCchhh---ccCCCEEEEeeCc
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES---IGVK--VLSDNNAV---VEYSDVVVFSVKP 81 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~---~g~~--~~~~~~~~---~~~aDiIil~v~~ 81 (274)
.+.||.||++.||..++.++.++|| .|.+| ||+.++.+++.. .|.. -..|+++. ++....|++.|+.
T Consensus 6 ~~digLiGLaVMGqnLiLN~~d~Gf----~v~~y-NRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkA 80 (487)
T KOG2653|consen 6 KADIGLIGLAVMGQNLILNIADKGF----TVCAY-NRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKA 80 (487)
T ss_pred ccchhhhhHhhhhhhhhhcccccCc----eEEEe-ccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeC
Confidence 3689999999999999999999999 99999 999999988876 3332 34566665 4568899999986
Q ss_pred cc-HHHHHHHhccccCCCCEEEEecCCCCHH---HHHHhhC-CCceEEE-cCCcHHhhcCCceEEecCCCCCHHHHHHHH
Q 024016 82 QV-VKDVAMQIRPLLSRKKLLVSVAAGVKLK---DLQEWTG-HSRFIRV-MPNTPSAVGEAATVMSLGGTATEEDGELIG 155 (274)
Q Consensus 82 ~~-~~~v~~~i~~~l~~~~~vis~~~g~~~~---~l~~~~~-~~~~~~~-~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~ 155 (274)
.. +...++++.+++.+|.+||+--+.--.+ +.++... +.-++.. +...-.-.+.|++.+. | .++++...++
T Consensus 81 G~pVD~~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GPSlMp-G--g~~~Awp~ik 157 (487)
T KOG2653|consen 81 GAPVDQFIEELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGPSLMP-G--GSKEAWPHIK 157 (487)
T ss_pred CCcHHHHHHHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCCccCC-C--CChHHHHHHH
Confidence 54 7788899999999999999754432222 2222222 2223332 1111112234555443 3 3789999999
Q ss_pred HHhhhcC-------Ce-EEcCccchhhHHHhhcchHHH--HHHHHHHHHHHHHH-cCCCHHHHHHHHH
Q 024016 156 KLFGSVG-------KI-WRADEKLFDAITGLSGSGPAY--IFLAIEALADGGVA-AGLPRELALGLAS 212 (274)
Q Consensus 156 ~ll~~~g-------~~-~~~~e~~~~~~~a~~~~~~~~--~~~~~~~l~e~~~~-~Gl~~~~~~~~~~ 212 (274)
++|+.+. .+ .++++..-..+..+...|.-| +..+.|+. +..++ .|++-++..++..
T Consensus 158 ~ifq~iaakv~~~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~EaY-~vlk~~~gls~~eia~vF~ 224 (487)
T KOG2653|consen 158 DIFQKIAAKVSDGEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLICEAY-DVLKSVLGLSNDEIAEVFD 224 (487)
T ss_pred HHHHHHHHHhcCCCCCeeeecCCCCccchhhhccCcccchHHHHHHHH-HHHHHhcCCcHHHHHHHHH
Confidence 9998652 22 456664333333333322222 22223332 22334 6777776555443
No 116
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.03 E-value=4.1e-08 Score=85.37 Aligned_cols=191 Identities=19% Similarity=0.246 Sum_probs=115.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-------------------cC-ceeccCchhhcc
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-------------------IG-VKVLSDNNAVVE 70 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-------------------~g-~~~~~~~~~~~~ 70 (274)
++|||||+|-+|.++|..+.++|+ +|..+ |.++.+.+.+.. .| .+.++++.+ ++
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~----~ViG~-DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~-l~ 83 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGF----KVIGV-DINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEE-LK 83 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCC----ceEeE-eCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhh-cc
Confidence 799999999999999999999999 99999 999988776653 12 455556555 56
Q ss_pred CCCEEEEeeCcc----------cHHHHHHHhccccCCCCEEE--EecCCCCHHHHHHhh-C---C----CceE------E
Q 024016 71 YSDVVVFSVKPQ----------VVKDVAMQIRPLLSRKKLLV--SVAAGVKLKDLQEWT-G---H----SRFI------R 124 (274)
Q Consensus 71 ~aDiIil~v~~~----------~~~~v~~~i~~~l~~~~~vi--s~~~g~~~~~l~~~~-~---~----~~~~------~ 124 (274)
.||++|+|||.. .++...+.|.+.|++|.+|| |++-+=+.+.+...+ . + ..+. |
T Consensus 84 ~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~laysPER 163 (436)
T COG0677 84 ECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYLAYSPER 163 (436)
T ss_pred cCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeEeeCccc
Confidence 999999999731 25566678999999999988 443322344433322 1 1 1121 3
Q ss_pred EcCCcHHhhcCCceEEecCCCCCHHHHHHHHHHhhhcCC-eEEcCccchhhHHHhhcchHHHH---HHHHHHHHHHHHHc
Q 024016 125 VMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGK-IWRADEKLFDAITGLSGSGPAYI---FLAIEALADGGVAA 200 (274)
Q Consensus 125 ~~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~g~-~~~~~e~~~~~~~a~~~~~~~~~---~~~~~~l~e~~~~~ 200 (274)
.+|+....--....-+..| .+++..+.+..+.+.+=. .+.++......+..+.- +.|- ..+++-|+-.+.+.
T Consensus 164 v~PG~~~~el~~~~kVIgG--~tp~~~e~a~~lY~~iv~~~~~vts~~tAEm~Kl~E--N~fRdVNIALaNElali~~~~ 239 (436)
T COG0677 164 VLPGNVLKELVNNPKVIGG--VTPKCAELAAALYKTIVEGVIPVTSARTAEMVKLTE--NTFRDVNIALANELALICNAM 239 (436)
T ss_pred cCCCchhhhhhcCCceeec--CCHHHHHHHHHHHHHheEEEEEcCChHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHh
Confidence 3343322111111123333 367777778888877653 34454332223333322 1121 12334444456789
Q ss_pred CCCHHHHHHHH
Q 024016 201 GLPRELALGLA 211 (274)
Q Consensus 201 Gl~~~~~~~~~ 211 (274)
|++.-++.++.
T Consensus 240 GIdvwevIeaA 250 (436)
T COG0677 240 GIDVWEVIEAA 250 (436)
T ss_pred CCcHHHHHHHh
Confidence 99876665544
No 117
>PRK08605 D-lactate dehydrogenase; Validated
Probab=99.02 E-value=1.1e-09 Score=95.92 Aligned_cols=105 Identities=16% Similarity=0.171 Sum_probs=76.0
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHH-hCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCccc-
Q 024016 6 IPAESFILGFIGAGKMAESIAKGVA-KSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQV- 83 (274)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~~a~~L~-~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~- 83 (274)
.....++|||||+|+||+++|+.|. ..|. +|++| +|++... . ..++....+..+++++||+|++++|...
T Consensus 142 ~~l~g~~VgIIG~G~IG~~vA~~L~~~~g~----~V~~~-d~~~~~~--~-~~~~~~~~~l~ell~~aDvIvl~lP~t~~ 213 (332)
T PRK08605 142 RSIKDLKVAVIGTGRIGLAVAKIFAKGYGS----DVVAY-DPFPNAK--A-ATYVDYKDTIEEAVEGADIVTLHMPATKY 213 (332)
T ss_pred ceeCCCEEEEECCCHHHHHHHHHHHhcCCC----EEEEE-CCCccHh--H-HhhccccCCHHHHHHhCCEEEEeCCCCcc
Confidence 3456789999999999999999994 4566 89999 9886542 1 1234444578889999999999998654
Q ss_pred HHHHH-HHhccccCCCCEEEEecCCCC--HHHHHHhhC
Q 024016 84 VKDVA-MQIRPLLSRKKLLVSVAAGVK--LKDLQEWTG 118 (274)
Q Consensus 84 ~~~v~-~~i~~~l~~~~~vis~~~g~~--~~~l~~~~~ 118 (274)
.+.++ .+..+.++++.++|+++.|.. .+.+.+.+.
T Consensus 214 t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~ 251 (332)
T PRK08605 214 NHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALD 251 (332)
T ss_pred hhhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHH
Confidence 33333 345667889999999887654 345555554
No 118
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=99.02 E-value=8.1e-09 Score=87.79 Aligned_cols=151 Identities=19% Similarity=0.217 Sum_probs=98.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCC---CCCCcEEEEeCCCHHH---HHHHHH------------------cCceeccC
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGV---LPPDRICTAVHSNLKR---RDAFES------------------IGVKVLSD 64 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~---~~~~~v~v~~~r~~~~---~~~l~~------------------~g~~~~~~ 64 (274)
...||+|||.|+||+++++.+.++-. .-..+|..| -+..+. .+.|.+ .++.+.+|
T Consensus 20 ~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmw-v~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~d 98 (372)
T KOG2711|consen 20 DPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMW-VFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPD 98 (372)
T ss_pred CceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEE-EeccccCChhHHHHHHhccccccccccCCccCCCCeEecch
Confidence 45799999999999999998866421 012367777 333211 122221 13455678
Q ss_pred chhhccCCCEEEEeeCcccHHHHHHHhccccCCCCEEEEecCCCCHH-----------HHHHhhCCCceEE-EcCCcHHh
Q 024016 65 NNAVVEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLK-----------DLQEWTGHSRFIR-VMPNTPSA 132 (274)
Q Consensus 65 ~~~~~~~aDiIil~v~~~~~~~v~~~i~~~l~~~~~vis~~~g~~~~-----------~l~~~~~~~~~~~-~~p~~~~~ 132 (274)
..+++.+||+++..+|.+.+..++++|..+++++...||+.+|+... .+.+.++ .++.- .-||.+.+
T Consensus 99 l~ea~~dADilvf~vPhQf~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~~lg-I~~~vL~GaNiA~E 177 (372)
T KOG2711|consen 99 LVEAAKDADILVFVVPHQFIPRICEQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHRALG-IPCSVLMGANIASE 177 (372)
T ss_pred HHHHhccCCEEEEeCChhhHHHHHHHHhcccCCCCeEEEeecceeccCCCCceeehHHHHHHHhC-CCceeecCCchHHH
Confidence 88999999999999999999999999999999999999999887632 3344444 22222 23666665
Q ss_pred hcCCc---eEEecCCCCCHHHHHHHHHHhhhcCC
Q 024016 133 VGEAA---TVMSLGGTATEEDGELIGKLFGSVGK 163 (274)
Q Consensus 133 ~~~g~---~~i~~~~~~~~~~~~~v~~ll~~~g~ 163 (274)
+.+.. +.+.+. .+.+.-..+..+|+.-..
T Consensus 178 Va~~~f~e~tIg~~--~~~~~~~~l~~lf~~p~F 209 (372)
T KOG2711|consen 178 VANEKFCETTIGYK--DKKEAGILLKKLFRTPYF 209 (372)
T ss_pred HHhccccceeEecc--chhhcchHHHHHhCCCce
Confidence 54322 223322 123333357788877553
No 119
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=99.02 E-value=2.4e-09 Score=91.05 Aligned_cols=80 Identities=23% Similarity=0.334 Sum_probs=65.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCc-EEEEeCCCHHHHHHHHH-cCceeccCchhhccCCCEEEEeeCcccHHHHH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDR-ICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVA 88 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~-v~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v~ 88 (274)
|||||||+|+||..+++.|.+.+. . .+ +.+| +|++++.+.+.+ .+...+++..+++.++|+|++|+|++...++.
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~-~-~elv~v~-d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~~~~~~~~ 78 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRI-N-AELYAFY-DRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASVNAVEEVV 78 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCC-C-eEEEEEE-CCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCChHHHHHHH
Confidence 699999999999999999987641 0 14 5577 999999888776 56777778888888999999999999988887
Q ss_pred HHhcc
Q 024016 89 MQIRP 93 (274)
Q Consensus 89 ~~i~~ 93 (274)
.++..
T Consensus 79 ~~al~ 83 (265)
T PRK13304 79 PKSLE 83 (265)
T ss_pred HHHHH
Confidence 76654
No 120
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=99.00 E-value=1.2e-09 Score=87.41 Aligned_cols=107 Identities=18% Similarity=0.292 Sum_probs=77.4
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCc-ccH
Q 024016 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP-QVV 84 (274)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~-~~~ 84 (274)
.....++|||||+|++|+.+++.+..-|. +|++| +|+..........++.. .+..++++.||+|++++|. +..
T Consensus 32 ~~l~g~tvgIiG~G~IG~~vA~~l~~fG~----~V~~~-d~~~~~~~~~~~~~~~~-~~l~ell~~aDiv~~~~plt~~T 105 (178)
T PF02826_consen 32 RELRGKTVGIIGYGRIGRAVARRLKAFGM----RVIGY-DRSPKPEEGADEFGVEY-VSLDELLAQADIVSLHLPLTPET 105 (178)
T ss_dssp S-STTSEEEEESTSHHHHHHHHHHHHTT-----EEEEE-ESSCHHHHHHHHTTEEE-SSHHHHHHH-SEEEE-SSSSTTT
T ss_pred cccCCCEEEEEEEcCCcCeEeeeeecCCc----eeEEe-cccCChhhhccccccee-eehhhhcchhhhhhhhhcccccc
Confidence 34456899999999999999999999998 99999 99987665455567654 5888999999999999983 334
Q ss_pred HHHH-HHhccccCCCCEEEEecCC--CCHHHHHHhhC
Q 024016 85 KDVA-MQIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (274)
Q Consensus 85 ~~v~-~~i~~~l~~~~~vis~~~g--~~~~~l~~~~~ 118 (274)
+.++ .+....+++|.++|++.-| +..+.+.+.+.
T Consensus 106 ~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~ 142 (178)
T PF02826_consen 106 RGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALE 142 (178)
T ss_dssp TTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHH
T ss_pred ceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHh
Confidence 4444 2344567899999998754 33456666664
No 121
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=98.95 E-value=7.6e-09 Score=88.81 Aligned_cols=93 Identities=14% Similarity=0.255 Sum_probs=72.0
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceec--cCchhhccCCCEEEEeeCccc
Q 024016 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL--SDNNAVVEYSDVVVFSVKPQV 83 (274)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~--~~~~~~~~~aDiIil~v~~~~ 83 (274)
.....++|+|||+|.||.++++.|...|. +|+++ +|++++.+.+.+.|.... .+..+.++++|+||.++|...
T Consensus 147 ~~l~gk~v~IiG~G~iG~avA~~L~~~G~----~V~v~-~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~~i 221 (287)
T TIGR02853 147 FTIHGSNVMVLGFGRTGMTIARTFSALGA----RVFVG-ARSSADLARITEMGLIPFPLNKLEEKVAEIDIVINTIPALV 221 (287)
T ss_pred CCCCCCEEEEEcChHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEECCChHH
Confidence 34556899999999999999999999998 99999 999988777666665432 345667889999999998653
Q ss_pred HHHHHHHhccccCCCCEEEEecC
Q 024016 84 VKDVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 84 ~~~v~~~i~~~l~~~~~vis~~~ 106 (274)
+. .+..+.++++.++|++.+
T Consensus 222 i~---~~~l~~~k~~aliIDlas 241 (287)
T TIGR02853 222 LT---ADVLSKLPKHAVIIDLAS 241 (287)
T ss_pred hC---HHHHhcCCCCeEEEEeCc
Confidence 22 233445678889998764
No 122
>PRK06436 glycerate dehydrogenase; Provisional
Probab=98.93 E-value=5.4e-09 Score=90.22 Aligned_cols=101 Identities=17% Similarity=0.266 Sum_probs=75.6
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCce-eccCchhhccCCCEEEEeeCc-ccH
Q 024016 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK-VLSDNNAVVEYSDVVVFSVKP-QVV 84 (274)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~-~~~~~~~~~~~aDiIil~v~~-~~~ 84 (274)
....++|||||+|+||+.+|+.+..-|. +|.+| +|+... .+.. ...+..+++++||+|++++|. ...
T Consensus 119 ~L~gktvgIiG~G~IG~~vA~~l~afG~----~V~~~-~r~~~~------~~~~~~~~~l~ell~~aDiv~~~lp~t~~T 187 (303)
T PRK06436 119 LLYNKSLGILGYGGIGRRVALLAKAFGM----NIYAY-TRSYVN------DGISSIYMEPEDIMKKSDFVLISLPLTDET 187 (303)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCC----EEEEE-CCCCcc------cCcccccCCHHHHHhhCCEEEECCCCCchh
Confidence 3456899999999999999998877788 99999 987432 2332 245788999999999999984 456
Q ss_pred HHHHH-HhccccCCCCEEEEecCC--CCHHHHHHhhC
Q 024016 85 KDVAM-QIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (274)
Q Consensus 85 ~~v~~-~i~~~l~~~~~vis~~~g--~~~~~l~~~~~ 118 (274)
+.++. +....++++.++|+++-| +..+.+.+.+.
T Consensus 188 ~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~ 224 (303)
T PRK06436 188 RGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLR 224 (303)
T ss_pred hcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHH
Confidence 66653 455668899999988754 33456666664
No 123
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=98.93 E-value=7.5e-09 Score=96.14 Aligned_cols=107 Identities=17% Similarity=0.281 Sum_probs=81.1
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCc-ccH
Q 024016 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP-QVV 84 (274)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~-~~~ 84 (274)
.+...++|||||+|+||+.+|+.|..-|. +|.+| +|... .+.....|+...++..+++++||+|++++|. ...
T Consensus 134 ~~l~gktvgIiG~G~IG~~vA~~l~~fG~----~V~~~-d~~~~-~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T 207 (525)
T TIGR01327 134 TELYGKTLGVIGLGRIGSIVAKRAKAFGM----KVLAY-DPYIS-PERAEQLGVELVDDLDELLARADFITVHTPLTPET 207 (525)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHhCCC----EEEEE-CCCCC-hhHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhh
Confidence 34566899999999999999999999998 99999 98532 2233346776666789999999999999984 456
Q ss_pred HHHH-HHhccccCCCCEEEEecCC--CCHHHHHHhhC
Q 024016 85 KDVA-MQIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (274)
Q Consensus 85 ~~v~-~~i~~~l~~~~~vis~~~g--~~~~~l~~~~~ 118 (274)
+.++ .+....++++.++|+++-| +..+.+.+.+.
T Consensus 208 ~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~ 244 (525)
T TIGR01327 208 RGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALE 244 (525)
T ss_pred ccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHH
Confidence 6666 3455578899999988754 33456666665
No 124
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=98.93 E-value=5.8e-09 Score=90.53 Aligned_cols=104 Identities=19% Similarity=0.240 Sum_probs=77.1
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccHHH
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVVKD 86 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~~~ 86 (274)
...++|||||+|+||..+++.|..-|+ +|.+| +|++++...+.. .....+..+++++||+|++++| ....+.
T Consensus 134 l~g~tvgIvG~G~IG~~vA~~l~afG~----~V~~~-~~~~~~~~~~~~--~~~~~~l~e~l~~aDvvv~~lPlt~~T~~ 206 (312)
T PRK15469 134 REDFTIGILGAGVLGSKVAQSLQTWGF----PLRCW-SRSRKSWPGVQS--FAGREELSAFLSQTRVLINLLPNTPETVG 206 (312)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-eCCCCCCCCcee--ecccccHHHHHhcCCEEEECCCCCHHHHH
Confidence 456899999999999999999999998 99999 987654321111 1112467788999999999998 455666
Q ss_pred HHH-HhccccCCCCEEEEecCC--CCHHHHHHhhC
Q 024016 87 VAM-QIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (274)
Q Consensus 87 v~~-~i~~~l~~~~~vis~~~g--~~~~~l~~~~~ 118 (274)
++. +....+++|.++|++.-| +..+.|.+.+.
T Consensus 207 li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~ 241 (312)
T PRK15469 207 IINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALD 241 (312)
T ss_pred HhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHh
Confidence 664 466678999999988754 33456666665
No 125
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=98.90 E-value=1.1e-08 Score=95.10 Aligned_cols=105 Identities=14% Similarity=0.254 Sum_probs=80.9
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCc-ccHH
Q 024016 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP-QVVK 85 (274)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~-~~~~ 85 (274)
....++|||||+|+||+.+|+.|..-|. +|.+| +|+... +.....|+... +..+++++||+|++++|. ...+
T Consensus 137 ~l~gktvgIiG~G~IG~~vA~~l~~fG~----~V~~~-d~~~~~-~~~~~~g~~~~-~l~ell~~aDiV~l~lP~t~~t~ 209 (526)
T PRK13581 137 ELYGKTLGIIGLGRIGSEVAKRAKAFGM----KVIAY-DPYISP-ERAAQLGVELV-SLDELLARADFITLHTPLTPETR 209 (526)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHhCCC----EEEEE-CCCCCh-hHHHhcCCEEE-cHHHHHhhCCEEEEccCCChHhh
Confidence 4456899999999999999999999998 99999 986432 23334677665 788999999999999984 4566
Q ss_pred HHH-HHhccccCCCCEEEEecCC--CCHHHHHHhhC
Q 024016 86 DVA-MQIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (274)
Q Consensus 86 ~v~-~~i~~~l~~~~~vis~~~g--~~~~~l~~~~~ 118 (274)
.++ .+....++++.++|+++-| +..+.+.+.+.
T Consensus 210 ~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~ 245 (526)
T PRK13581 210 GLIGAEELAKMKPGVRIINCARGGIIDEAALAEALK 245 (526)
T ss_pred cCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHh
Confidence 666 4566778999999988754 33456666664
No 126
>PRK06141 ornithine cyclodeaminase; Validated
Probab=98.82 E-value=1.8e-08 Score=87.78 Aligned_cols=87 Identities=17% Similarity=0.234 Sum_probs=65.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHh-CCCCCCCcEEEEeCCCHHHHHHHHHc----C--ceeccCchhhccCCCEEEEeeCc
Q 024016 9 ESFILGFIGAGKMAESIAKGVAK-SGVLPPDRICTAVHSNLKRRDAFESI----G--VKVLSDNNAVVEYSDVVVFSVKP 81 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~-~g~~~~~~v~v~~~r~~~~~~~l~~~----g--~~~~~~~~~~~~~aDiIil~v~~ 81 (274)
+..+|+|||+|.||..+++.+.. .+. .+|++| +|++++++.+.+. | +..+.+..+++++||+|+.|++.
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~~---~~V~V~-~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s 199 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRPI---KQVRVW-GRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLS 199 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhcCCC---CEEEEE-cCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCC
Confidence 45799999999999999986665 332 389999 9999998888762 4 55667788889999999988876
Q ss_pred ccHHHHHHHhccccCCCCEEEE
Q 024016 82 QVVKDVAMQIRPLLSRKKLLVS 103 (274)
Q Consensus 82 ~~~~~v~~~i~~~l~~~~~vis 103 (274)
. ..++.. ..+++|+.|..
T Consensus 200 ~--~pvl~~--~~l~~g~~i~~ 217 (314)
T PRK06141 200 T--EPLVRG--EWLKPGTHLDL 217 (314)
T ss_pred C--CCEecH--HHcCCCCEEEe
Confidence 5 333321 34678874443
No 127
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=98.82 E-value=6.1e-08 Score=72.15 Aligned_cols=100 Identities=20% Similarity=0.354 Sum_probs=72.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEE-EEeCCCHHHHHHHHH-cCceeccCchhhcc--CCCEEEEeeCcccHHH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRIC-TAVHSNLKRRDAFES-IGVKVLSDNNAVVE--YSDVVVFSVKPQVVKD 86 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~-v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~--~aDiIil~v~~~~~~~ 86 (274)
+||||||+|.+|......+.+... ..++. ++ ++++++.+.+.+ .|+..++|..++++ +.|+|++|+|+....+
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~--~~~v~~v~-d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~ 77 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSP--DFEVVAVC-DPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPSSHAE 77 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTT--TEEEEEEE-CSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGGGHHH
T ss_pred CEEEEECCcHHHHHHHHHHHhcCC--CcEEEEEE-eCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCcchHH
Confidence 489999999999999999988732 12554 66 999999988765 78888889988887 7899999999988777
Q ss_pred HHHHhccccCCCCEE-EEecCCCCHHHHHHh
Q 024016 87 VAMQIRPLLSRKKLL-VSVAAGVKLKDLQEW 116 (274)
Q Consensus 87 v~~~i~~~l~~~~~v-is~~~g~~~~~l~~~ 116 (274)
.+..... .|.-| +.---..+.+..++.
T Consensus 78 ~~~~~l~---~g~~v~~EKP~~~~~~~~~~l 105 (120)
T PF01408_consen 78 IAKKALE---AGKHVLVEKPLALTLEEAEEL 105 (120)
T ss_dssp HHHHHHH---TTSEEEEESSSSSSHHHHHHH
T ss_pred HHHHHHH---cCCEEEEEcCCcCCHHHHHHH
Confidence 7766543 33333 332123355555443
No 128
>PLN02928 oxidoreductase family protein
Probab=98.78 E-value=4.5e-08 Score=86.30 Aligned_cols=106 Identities=14% Similarity=0.140 Sum_probs=76.1
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHH------------HHcCceeccCchhhccCCCE
Q 024016 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF------------ESIGVKVLSDNNAVVEYSDV 74 (274)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l------------~~~g~~~~~~~~~~~~~aDi 74 (274)
....++|||||+|+||+.+|+.|..-|. +|++| +|+..+.... ...+. ...+..+++++||+
T Consensus 156 ~l~gktvGIiG~G~IG~~vA~~l~afG~----~V~~~-dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~ell~~aDi 229 (347)
T PLN02928 156 TLFGKTVFILGYGAIGIELAKRLRPFGV----KLLAT-RRSWTSEPEDGLLIPNGDVDDLVDEKG-GHEDIYEFAGEADI 229 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHhhCCC----EEEEE-CCCCChhhhhhhccccccccccccccC-cccCHHHHHhhCCE
Confidence 3456899999999999999999999898 99999 9874321111 00111 23577889999999
Q ss_pred EEEeeC-cccHHHHH-HHhccccCCCCEEEEecCC--CCHHHHHHhhC
Q 024016 75 VVFSVK-PQVVKDVA-MQIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (274)
Q Consensus 75 Iil~v~-~~~~~~v~-~~i~~~l~~~~~vis~~~g--~~~~~l~~~~~ 118 (274)
|++++| ....+.++ .+....+++|.++|++.-| +..+.|.+.+.
T Consensus 230 Vvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~ 277 (347)
T PLN02928 230 VVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALE 277 (347)
T ss_pred EEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHH
Confidence 999998 34455555 3455668899999998744 34456666665
No 129
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.77 E-value=1.9e-08 Score=85.84 Aligned_cols=74 Identities=19% Similarity=0.258 Sum_probs=61.1
Q ss_pred CCCCCeEEEEccc-HHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccH
Q 024016 7 PAESFILGFIGAG-KMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVV 84 (274)
Q Consensus 7 ~~~~~~IgiIG~G-~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~ 84 (274)
+...++|+|||.| .||.+|+..|.++|+ +|++| +|... ++.+++++||+||+|++ +..+
T Consensus 156 ~l~Gk~V~vIG~s~ivG~PmA~~L~~~ga----tVtv~-~~~t~--------------~l~e~~~~ADIVIsavg~~~~v 216 (301)
T PRK14194 156 DLTGKHAVVIGRSNIVGKPMAALLLQAHC----SVTVV-HSRST--------------DAKALCRQADIVVAAVGRPRLI 216 (301)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCC----EEEEE-CCCCC--------------CHHHHHhcCCEEEEecCChhcc
Confidence 3456899999996 999999999999999 99999 77632 67788899999999996 5555
Q ss_pred HHHHHHhccccCCCCEEEEec
Q 024016 85 KDVAMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~~ 105 (274)
.+.. +++|++||++.
T Consensus 217 ~~~~------ik~GaiVIDvg 231 (301)
T PRK14194 217 DADW------LKPGAVVIDVG 231 (301)
T ss_pred cHhh------ccCCcEEEEec
Confidence 5544 67999999873
No 130
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=98.77 E-value=7.6e-08 Score=83.07 Aligned_cols=94 Identities=14% Similarity=0.269 Sum_probs=73.1
Q ss_pred CCCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceec--cCchhhccCCCEEEEeeCcc
Q 024016 5 PIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL--SDNNAVVEYSDVVVFSVKPQ 82 (274)
Q Consensus 5 ~~~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~--~~~~~~~~~aDiIil~v~~~ 82 (274)
+.....+|++|||+|.+|..++..|...|. +|+++ +|++++.+.....|.+.. .+..+.+.++|+||.++|+.
T Consensus 147 ~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga----~V~v~-~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~~ 221 (296)
T PRK08306 147 PITIHGSNVLVLGFGRTGMTLARTLKALGA----NVTVG-ARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIPAL 221 (296)
T ss_pred CCCCCCCEEEEECCcHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCChh
Confidence 334456899999999999999999999998 99999 999888777766777643 34567788999999999865
Q ss_pred cHHHHHHHhccccCCCCEEEEecC
Q 024016 83 VVKDVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 83 ~~~~v~~~i~~~l~~~~~vis~~~ 106 (274)
.+ -++....++++.++|++..
T Consensus 222 ~i---~~~~l~~~~~g~vIIDla~ 242 (296)
T PRK08306 222 VL---TKEVLSKMPPEALIIDLAS 242 (296)
T ss_pred hh---hHHHHHcCCCCcEEEEEcc
Confidence 33 2334455678999998754
No 131
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=98.76 E-value=6.6e-08 Score=84.16 Aligned_cols=95 Identities=22% Similarity=0.306 Sum_probs=69.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceec--cCchhhccCCCEEEEeeCcccHH
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVL--SDNNAVVEYSDVVVFSVKPQVVK 85 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~--~~~~~~~~~aDiIil~v~~~~~~ 85 (274)
..++|+|||+|.||..+++.|...|. .+|+++ +|++++++.+++ .|..+. ++..+.+.++|+||.|++.....
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~g~---~~V~v~-~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~~~ 252 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKGV---AEITIA-NRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPHYA 252 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHcCC---CEEEEE-eCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCchH
Confidence 46799999999999999999988663 289999 999998877776 565432 34456678899999999866655
Q ss_pred HHHHHhcccc-CCCCEEEEecCC
Q 024016 86 DVAMQIRPLL-SRKKLLVSVAAG 107 (274)
Q Consensus 86 ~v~~~i~~~l-~~~~~vis~~~g 107 (274)
+++....... .++.++|+++.+
T Consensus 253 ~~~~~~~~~~~~~~~~viDlavP 275 (311)
T cd05213 253 KIVERAMKKRSGKPRLIVDLAVP 275 (311)
T ss_pred HHHHHHHhhCCCCCeEEEEeCCC
Confidence 5454433222 256788887654
No 132
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=98.75 E-value=2.2e-07 Score=75.69 Aligned_cols=92 Identities=18% Similarity=0.203 Sum_probs=67.2
Q ss_pred CCCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeccCchhhc-cCCCEEEEeeCcc
Q 024016 5 PIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVV-EYSDVVVFSVKPQ 82 (274)
Q Consensus 5 ~~~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~-~~aDiIil~v~~~ 82 (274)
+..+..++|+|+|+|+||..+++.|.+.|+ +|+++ |+++++.+.+.+ .|....++ .++. .+||+++.|....
T Consensus 23 ~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~----~Vvv~-D~~~~~~~~~~~~~g~~~v~~-~~l~~~~~Dv~vp~A~~~ 96 (200)
T cd01075 23 TDSLEGKTVAVQGLGKVGYKLAEHLLEEGA----KLIVA-DINEEAVARAAELFGATVVAP-EEIYSVDADVFAPCALGG 96 (200)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-cCCHHHHHHHHHHcCCEEEcc-hhhccccCCEEEeccccc
Confidence 445567899999999999999999999999 99999 999998888776 47665544 4444 3899999775543
Q ss_pred c-HHHHHHHhccccCCCCEEEEecCC
Q 024016 83 V-VKDVAMQIRPLLSRKKLLVSVAAG 107 (274)
Q Consensus 83 ~-~~~v~~~i~~~l~~~~~vis~~~g 107 (274)
. ..+.++++ + .++|+.-.++
T Consensus 97 ~I~~~~~~~l----~-~~~v~~~AN~ 117 (200)
T cd01075 97 VINDDTIPQL----K-AKAIAGAANN 117 (200)
T ss_pred ccCHHHHHHc----C-CCEEEECCcC
Confidence 3 33444443 2 3567765554
No 133
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=98.74 E-value=5e-08 Score=86.63 Aligned_cols=103 Identities=14% Similarity=0.179 Sum_probs=74.9
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcc---
Q 024016 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ--- 82 (274)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~--- 82 (274)
.....++|||||+|+||+.+++.+..-|. +|.+| |+..... .+.....+..+++++||+|++++|-.
T Consensus 112 ~~l~gktvGIIG~G~IG~~va~~l~a~G~----~V~~~-Dp~~~~~-----~~~~~~~~l~ell~~aDiV~lh~Plt~~g 181 (381)
T PRK00257 112 VDLAERTYGVVGAGHVGGRLVRVLRGLGW----KVLVC-DPPRQEA-----EGDGDFVSLERILEECDVISLHTPLTKEG 181 (381)
T ss_pred CCcCcCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-CCccccc-----ccCccccCHHHHHhhCCEEEEeCcCCCCc
Confidence 34456899999999999999999999998 99999 8754321 12222357888999999999999842
Q ss_pred --cHHHHH-HHhccccCCCCEEEEecCCC--CHHHHHHhhC
Q 024016 83 --VVKDVA-MQIRPLLSRKKLLVSVAAGV--KLKDLQEWTG 118 (274)
Q Consensus 83 --~~~~v~-~~i~~~l~~~~~vis~~~g~--~~~~l~~~~~ 118 (274)
....++ .+....+++|.++|+++-|- ..+.+.+.+.
T Consensus 182 ~~~T~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~ 222 (381)
T PRK00257 182 EHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREALL 222 (381)
T ss_pred cccccccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHH
Confidence 244444 34556688999999887553 3455655553
No 134
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=98.73 E-value=6.2e-08 Score=84.31 Aligned_cols=106 Identities=14% Similarity=0.204 Sum_probs=79.6
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccHH
Q 024016 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVVK 85 (274)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~~ 85 (274)
+...+++||||+|++|+.+++.+..-|. +|.+| |+...+. .....+.....+.++++++||+|.+.+| .+..+
T Consensus 139 el~gkTvGIiG~G~IG~~va~~l~afgm----~v~~~-d~~~~~~-~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~ 212 (324)
T COG0111 139 ELAGKTVGIIGLGRIGRAVAKRLKAFGM----KVIGY-DPYSPRE-RAGVDGVVGVDSLDELLAEADILTLHLPLTPETR 212 (324)
T ss_pred cccCCEEEEECCCHHHHHHHHHHHhCCC----eEEEE-CCCCchh-hhccccceecccHHHHHhhCCEEEEcCCCCcchh
Confidence 3446899999999999999999999998 99999 9833222 1112455556788999999999999998 55677
Q ss_pred HHHH-HhccccCCCCEEEEecCCC--CHHHHHHhhC
Q 024016 86 DVAM-QIRPLLSRKKLLVSVAAGV--KLKDLQEWTG 118 (274)
Q Consensus 86 ~v~~-~i~~~l~~~~~vis~~~g~--~~~~l~~~~~ 118 (274)
.++. +....+++|.++|+++=|- ..+.|-+.+.
T Consensus 213 g~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~ 248 (324)
T COG0111 213 GLINAEELAKMKPGAILINAARGGVVDEDALLAALD 248 (324)
T ss_pred cccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHH
Confidence 7663 3455688999999887443 3456666665
No 135
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=98.72 E-value=1.3e-07 Score=82.58 Aligned_cols=106 Identities=14% Similarity=0.207 Sum_probs=76.9
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHH-hCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-ccc
Q 024016 6 IPAESFILGFIGAGKMAESIAKGVA-KSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQV 83 (274)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~~a~~L~-~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~ 83 (274)
.....+++||||+|++|..+++.+. .-|- +|..| +|.... +.....++.. .+..+++++||+|++++| ...
T Consensus 141 ~~L~gktvGIiG~G~IG~~va~~l~~~fgm----~V~~~-~~~~~~-~~~~~~~~~~-~~l~ell~~sDvv~lh~plt~~ 213 (323)
T PRK15409 141 TDVHHKTLGIVGMGRIGMALAQRAHFGFNM----PILYN-ARRHHK-EAEERFNARY-CDLDTLLQESDFVCIILPLTDE 213 (323)
T ss_pred CCCCCCEEEEEcccHHHHHHHHHHHhcCCC----EEEEE-CCCCch-hhHHhcCcEe-cCHHHHHHhCCEEEEeCCCChH
Confidence 3456689999999999999999986 5555 78888 876422 2222356654 478899999999999998 445
Q ss_pred HHHHH-HHhccccCCCCEEEEecCC--CCHHHHHHhhC
Q 024016 84 VKDVA-MQIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (274)
Q Consensus 84 ~~~v~-~~i~~~l~~~~~vis~~~g--~~~~~l~~~~~ 118 (274)
.+.++ .+....++++.++|++.=| +..+.|.+.+.
T Consensus 214 T~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~ 251 (323)
T PRK15409 214 THHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQ 251 (323)
T ss_pred HhhccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHH
Confidence 66666 3455668899999988744 34456766665
No 136
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=98.68 E-value=1.6e-07 Score=81.64 Aligned_cols=104 Identities=16% Similarity=0.292 Sum_probs=75.6
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccHHH
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVVKD 86 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~~~ 86 (274)
...+++||||+|++|.++|+++..=|- +|..| +|++. .+.-...+..... ..+++++||+|.+.+| ......
T Consensus 144 l~gktvGIiG~GrIG~avA~r~~~Fgm----~v~y~-~~~~~-~~~~~~~~~~y~~-l~ell~~sDii~l~~Plt~~T~h 216 (324)
T COG1052 144 LRGKTLGIIGLGRIGQAVARRLKGFGM----KVLYY-DRSPN-PEAEKELGARYVD-LDELLAESDIISLHCPLTPETRH 216 (324)
T ss_pred CCCCEEEEECCCHHHHHHHHHHhcCCC----EEEEE-CCCCC-hHHHhhcCceecc-HHHHHHhCCEEEEeCCCChHHhh
Confidence 456899999999999999999974444 78888 98875 2222334466554 8899999999999998 445666
Q ss_pred HH-HHhccccCCCCEEEEecCC--CCHHHHHHhhC
Q 024016 87 VA-MQIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (274)
Q Consensus 87 v~-~~i~~~l~~~~~vis~~~g--~~~~~l~~~~~ 118 (274)
++ .+....++++.++|.+.=| +..+.+-+.+.
T Consensus 217 Lin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~ 251 (324)
T COG1052 217 LINAEELAKMKPGAILVNTARGGLVDEQALIDALK 251 (324)
T ss_pred hcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHH
Confidence 66 3455668899999988744 33455655554
No 137
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=98.68 E-value=1.2e-07 Score=82.91 Aligned_cols=90 Identities=20% Similarity=0.282 Sum_probs=67.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH----cC--ceeccCchhhccCCCEEEEeeCcc
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES----IG--VKVLSDNNAVVEYSDVVVFSVKPQ 82 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~----~g--~~~~~~~~~~~~~aDiIil~v~~~ 82 (274)
+..++||||+|.||...+..+...- +..+|.+| +|++++++.+.+ .| +..+.++.+++++||+|++|||..
T Consensus 127 ~~~~lgiiG~G~qA~~~l~al~~~~--~~~~v~V~-~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~ 203 (325)
T TIGR02371 127 DSSVLGIIGAGRQAWTQLEALSRVF--DLEEVSVY-CRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSR 203 (325)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcC--CCCEEEEE-CCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCC
Confidence 4578999999999999888876532 34589999 999999887765 35 456788999999999999999764
Q ss_pred cHHHHHHHhccccCCCCEEEEec
Q 024016 83 VVKDVAMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 83 ~~~~v~~~i~~~l~~~~~vis~~ 105 (274)
. .++. ...++||..|.++.
T Consensus 204 ~--P~~~--~~~l~~g~~v~~vG 222 (325)
T TIGR02371 204 K--PVVK--ADWVSEGTHINAIG 222 (325)
T ss_pred C--cEec--HHHcCCCCEEEecC
Confidence 3 2221 12357888776653
No 138
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=98.67 E-value=1.6e-07 Score=84.59 Aligned_cols=104 Identities=17% Similarity=0.243 Sum_probs=78.4
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCc-ccH
Q 024016 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP-QVV 84 (274)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~-~~~ 84 (274)
.....++|||||+|++|+.+|+.+..-|. +|..| +|++... ..++....+..++++.||+|.+++|. +..
T Consensus 147 ~~L~gktvGIiG~G~IG~~vA~~~~~fGm----~V~~~-d~~~~~~----~~~~~~~~~l~ell~~sDiVslh~Plt~~T 217 (409)
T PRK11790 147 FEVRGKTLGIVGYGHIGTQLSVLAESLGM----RVYFY-DIEDKLP----LGNARQVGSLEELLAQSDVVSLHVPETPST 217 (409)
T ss_pred ccCCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-CCCcccc----cCCceecCCHHHHHhhCCEEEEcCCCChHH
Confidence 34566899999999999999999998888 99999 9864321 12344456789999999999999984 456
Q ss_pred HHHH-HHhccccCCCCEEEEecCC--CCHHHHHHhhC
Q 024016 85 KDVA-MQIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (274)
Q Consensus 85 ~~v~-~~i~~~l~~~~~vis~~~g--~~~~~l~~~~~ 118 (274)
+.++ .+....+++|.++|+++-| +..+.+.+.+.
T Consensus 218 ~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~ 254 (409)
T PRK11790 218 KNMIGAEELALMKPGAILINASRGTVVDIDALADALK 254 (409)
T ss_pred hhccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHH
Confidence 6666 3455678899999998744 34456666664
No 139
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=98.66 E-value=1.4e-07 Score=83.60 Aligned_cols=104 Identities=13% Similarity=0.199 Sum_probs=74.6
Q ss_pred CCCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCccc-
Q 024016 5 PIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQV- 83 (274)
Q Consensus 5 ~~~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~- 83 (274)
++....++|||||+|+||+.+++.|..-|. +|.+| |+..... .... ...+..+++++||+|++.+|-..
T Consensus 111 g~~L~gktvGIIG~G~IG~~vA~~l~a~G~----~V~~~-dp~~~~~----~~~~-~~~~L~ell~~sDiI~lh~PLt~~ 180 (378)
T PRK15438 111 GFSLHDRTVGIVGVGNVGRRLQARLEALGI----KTLLC-DPPRADR----GDEG-DFRSLDELVQEADILTFHTPLFKD 180 (378)
T ss_pred CCCcCCCEEEEECcCHHHHHHHHHHHHCCC----EEEEE-CCccccc----cccc-ccCCHHHHHhhCCEEEEeCCCCCC
Confidence 345567899999999999999999999998 99999 8753211 1111 23578899999999999987321
Q ss_pred ----HHHHH-HHhccccCCCCEEEEecCC--CCHHHHHHhhC
Q 024016 84 ----VKDVA-MQIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (274)
Q Consensus 84 ----~~~v~-~~i~~~l~~~~~vis~~~g--~~~~~l~~~~~ 118 (274)
...++ .+....+++|+++|+++=| +..+.+.+.+.
T Consensus 181 g~~~T~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~ 222 (378)
T PRK15438 181 GPYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLN 222 (378)
T ss_pred cccccccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHH
Confidence 33444 3455668899999998744 34456655554
No 140
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=98.66 E-value=1.2e-07 Score=70.99 Aligned_cols=94 Identities=12% Similarity=0.211 Sum_probs=63.3
Q ss_pred eEEEEc-ccHHHHHHHHHHHhC-CCCCCCcEEEEeCCCHHHHHHHHHcC--ce-e-c--cCchhh-ccCCCEEEEeeCcc
Q 024016 12 ILGFIG-AGKMAESIAKGVAKS-GVLPPDRICTAVHSNLKRRDAFESIG--VK-V-L--SDNNAV-VEYSDVVVFSVKPQ 82 (274)
Q Consensus 12 ~IgiIG-~G~mG~~~a~~L~~~-g~~~~~~v~v~~~r~~~~~~~l~~~g--~~-~-~--~~~~~~-~~~aDiIil~v~~~ 82 (274)
||+||| .|.+|..++..|.+. ++ ++...+.|++++.+.+...+ +. . . .+..+. ..++|+||+|+|++
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~----~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~ 76 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDF----EVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHG 76 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCc----eEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcH
Confidence 689999 599999999999885 55 66544355544433333321 21 1 0 111121 24899999999999
Q ss_pred cHHHHHHHhccccCCCCEEEEecCCCC
Q 024016 83 VVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 83 ~~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
...+++..+...+.+|+++|++++...
T Consensus 77 ~~~~~~~~~~~~~~~g~~viD~s~~~~ 103 (122)
T smart00859 77 VSKEIAPLLPKAAEAGVKVIDLSSAFR 103 (122)
T ss_pred HHHHHHHHHHhhhcCCCEEEECCcccc
Confidence 988887766666689999999877654
No 141
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=98.64 E-value=2.4e-07 Score=74.60 Aligned_cols=91 Identities=19% Similarity=0.360 Sum_probs=69.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeccCchhhccCCCEEEEeeCcccHHHHHH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVAM 89 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v~~ 89 (274)
++||+||||++|..+..-+. .|-.+-.-+.+| ||+.+++..+.+ .+....++.++.+++.|+++-|-.++++++...
T Consensus 1 l~vgiVGcGaIG~~l~e~v~-~~~~~~e~v~v~-D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS~~Av~e~~~ 78 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVR-DGRVDFELVAVY-DRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAASPEAVREYVP 78 (255)
T ss_pred CeEEEEeccHHHHHHHHHHh-cCCcceeEEEEe-cCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeCCHHHHHHHhH
Confidence 58999999999998887654 442222346677 999999988877 454444788888899999999999999999888
Q ss_pred HhccccCCCCEEEEe
Q 024016 90 QIRPLLSRKKLLVSV 104 (274)
Q Consensus 90 ~i~~~l~~~~~vis~ 104 (274)
+++.. ..+-+|+|+
T Consensus 79 ~~L~~-g~d~iV~SV 92 (255)
T COG1712 79 KILKA-GIDVIVMSV 92 (255)
T ss_pred HHHhc-CCCEEEEec
Confidence 77643 234455565
No 142
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=98.62 E-value=2.4e-07 Score=80.53 Aligned_cols=102 Identities=20% Similarity=0.267 Sum_probs=76.0
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccHH
Q 024016 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVVK 85 (274)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~~ 85 (274)
....++|||||+|++|+.+|+.+..-|- +|..| +|..... ..+... .+..++++.||+|++++| .+..+
T Consensus 142 ~L~gktvGIiG~G~IG~~vA~~~~~fgm----~V~~~-d~~~~~~----~~~~~~-~~l~ell~~sDvv~lh~Plt~~T~ 211 (311)
T PRK08410 142 EIKGKKWGIIGLGTIGKRVAKIAQAFGA----KVVYY-STSGKNK----NEEYER-VSLEELLKTSDIISIHAPLNEKTK 211 (311)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhhcCC----EEEEE-CCCcccc----ccCcee-ecHHHHhhcCCEEEEeCCCCchhh
Confidence 4567899999999999999999987776 89999 9864321 124433 478899999999999998 44555
Q ss_pred HHH-HHhccccCCCCEEEEecCC--CCHHHHHHhhC
Q 024016 86 DVA-MQIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (274)
Q Consensus 86 ~v~-~~i~~~l~~~~~vis~~~g--~~~~~l~~~~~ 118 (274)
.++ .+....++++.++|++.-| +..+.|.+.+.
T Consensus 212 ~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~ 247 (311)
T PRK08410 212 NLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALD 247 (311)
T ss_pred cccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHH
Confidence 555 3455668899999998744 34556766665
No 143
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=98.61 E-value=2.7e-07 Score=79.65 Aligned_cols=103 Identities=18% Similarity=0.239 Sum_probs=78.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccHHHHH
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVVKDVA 88 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~~~v~ 88 (274)
.+||||+|+|++|+.+|++|..-|- .+.-+ +|++.+.+...+.+.. ..+..+.+.++|+|++|+| ......++
T Consensus 162 gK~vgilG~G~IG~~ia~rL~~Fg~----~i~y~-~r~~~~~~~~~~~~~~-~~d~~~~~~~sD~ivv~~pLt~~T~~li 235 (336)
T KOG0069|consen 162 GKTVGILGLGRIGKAIAKRLKPFGC----VILYH-SRTQLPPEEAYEYYAE-FVDIEELLANSDVIVVNCPLTKETRHLI 235 (336)
T ss_pred CCEEEEecCcHHHHHHHHhhhhccc----eeeee-cccCCchhhHHHhccc-ccCHHHHHhhCCEEEEecCCCHHHHHHh
Confidence 4799999999999999999988542 45555 8887777766666655 3467889999999999998 45577777
Q ss_pred -HHhccccCCCCEEEEecCC--CCHHHHHHhhC
Q 024016 89 -MQIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (274)
Q Consensus 89 -~~i~~~l~~~~~vis~~~g--~~~~~l~~~~~ 118 (274)
.+...+++++.++|++.=| +.-+.+.+.++
T Consensus 236 Nk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~ 268 (336)
T KOG0069|consen 236 NKKFIEKMKDGAVLVNTARGAIIDEEALVEALK 268 (336)
T ss_pred hHHHHHhcCCCeEEEeccccccccHHHHHHHHh
Confidence 4577788999999988644 33455666665
No 144
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.59 E-value=1.4e-07 Score=80.66 Aligned_cols=72 Identities=21% Similarity=0.274 Sum_probs=58.9
Q ss_pred CCCCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeC-CCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-ccc
Q 024016 7 PAESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVH-SNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQV 83 (274)
Q Consensus 7 ~~~~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~-r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~ 83 (274)
....++|+||| .|.||.+|+..|.++|+ +|++| + |++ ++.++++.||+||+|++ +..
T Consensus 155 ~~~Gk~V~viGrs~~mG~PmA~~L~~~g~----tVtv~-~~rT~---------------~l~e~~~~ADIVIsavg~~~~ 214 (296)
T PRK14188 155 DLSGLNAVVIGRSNLVGKPMAQLLLAANA----TVTIA-HSRTR---------------DLPAVCRRADILVAAVGRPEM 214 (296)
T ss_pred CCCCCEEEEEcCCcchHHHHHHHHHhCCC----EEEEE-CCCCC---------------CHHHHHhcCCEEEEecCChhh
Confidence 34568999999 99999999999999999 99999 6 553 34677889999999996 444
Q ss_pred HHHHHHHhccccCCCCEEEEe
Q 024016 84 VKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 84 ~~~v~~~i~~~l~~~~~vis~ 104 (274)
+.+.+ +++|++||++
T Consensus 215 v~~~~------lk~GavVIDv 229 (296)
T PRK14188 215 VKGDW------IKPGATVIDV 229 (296)
T ss_pred cchhe------ecCCCEEEEc
Confidence 44433 6799999986
No 145
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=98.57 E-value=3.1e-07 Score=74.07 Aligned_cols=149 Identities=15% Similarity=0.103 Sum_probs=106.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHH-----------HHHcC--------------ceecc
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA-----------FESIG--------------VKVLS 63 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~-----------l~~~g--------------~~~~~ 63 (274)
+..||+|+|.|.+|++||--+...|| +|.+| |..++..+. |.+.| +..++
T Consensus 2 s~~ki~ivgSgl~g~~WAmlFAs~Gy----qVqlY-DI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~ 76 (313)
T KOG2305|consen 2 SFGKIAIVGSGLVGSSWAMLFASSGY----QVQLY-DILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTT 76 (313)
T ss_pred CccceeEeecccccchHHHHHhccCc----eEEEe-eccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCc
Confidence 35699999999999999999999999 99999 998876432 11222 23456
Q ss_pred CchhhccCCCEEEEeeCcc-c-HHHHHHHhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHhhcCCceEE
Q 024016 64 DNNAVVEYSDVVVFSVKPQ-V-VKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVM 140 (274)
Q Consensus 64 ~~~~~~~~aDiIil~v~~~-~-~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~i 140 (274)
+..|+++++=.|--|+|.+ . -+.++.++-..+.+.+++-|.++.+.++.+.+-+. ..+++-.||..|...-- ..-+
T Consensus 77 ~l~E~vk~Ai~iQEcvpE~L~lkk~ly~qlD~i~d~~tIlaSSTSt~mpS~~s~gL~~k~q~lvaHPvNPPyfiP-LvEl 155 (313)
T KOG2305|consen 77 SLNELVKGAIHIQECVPEDLNLKKQLYKQLDEIADPTTILASSTSTFMPSKFSAGLINKEQCLVAHPVNPPYFIP-LVEL 155 (313)
T ss_pred cHHHHHhhhhhHHhhchHhhHHHHHHHHHHHHhcCCceEEeccccccChHHHhhhhhhhhheeEecCCCCCcccc-hhee
Confidence 7789999988888899854 2 34566666666667666656666777776655443 35677788865432211 2335
Q ss_pred ecCCCCCHHHHHHHHHHhhhcCC
Q 024016 141 SLGGTATEEDGELIGKLFGSVGK 163 (274)
Q Consensus 141 ~~~~~~~~~~~~~v~~ll~~~g~ 163 (274)
++.+-.+++.+++-+.+.+.+|.
T Consensus 156 VPaPwTsp~tVdrt~~lM~sigq 178 (313)
T KOG2305|consen 156 VPAPWTSPDTVDRTRALMRSIGQ 178 (313)
T ss_pred ccCCCCChhHHHHHHHHHHHhCC
Confidence 66777789999999999999994
No 146
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=98.56 E-value=1.7e-07 Score=71.46 Aligned_cols=70 Identities=21% Similarity=0.328 Sum_probs=56.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-c---Cce--eccCchhhccCCCEEEEeeCcc
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-I---GVK--VLSDNNAVVEYSDVVVFSVKPQ 82 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~---g~~--~~~~~~~~~~~aDiIil~v~~~ 82 (274)
+..++.|||+|.+|++++..|.+.|. .+|+++ +|+.++++.+.+ . .+. ..++..+...++|+||.|+|..
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~---~~i~i~-nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~ 86 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGA---KEITIV-NRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSG 86 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTS---SEEEEE-ESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTT
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCC---CEEEEE-ECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCC
Confidence 56799999999999999999999997 359999 999999998887 3 222 2345556678999999999854
No 147
>PLN02306 hydroxypyruvate reductase
Probab=98.55 E-value=8.1e-07 Score=79.22 Aligned_cols=108 Identities=18% Similarity=0.216 Sum_probs=75.4
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHH-hCCCCCCCcEEEEeCCCHHH-HHHH-HHcC------------ceeccCchhhcc
Q 024016 6 IPAESFILGFIGAGKMAESIAKGVA-KSGVLPPDRICTAVHSNLKR-RDAF-ESIG------------VKVLSDNNAVVE 70 (274)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~~a~~L~-~~g~~~~~~v~v~~~r~~~~-~~~l-~~~g------------~~~~~~~~~~~~ 70 (274)
.....++|||||+|++|+.+|+.+. .-|. +|..| ||.+.. .+.. ...| .....+..++++
T Consensus 161 ~~L~gktvGIiG~G~IG~~vA~~l~~~fGm----~V~~~-d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~ 235 (386)
T PLN02306 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM----NLIYY-DLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLR 235 (386)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHhcCCC----EEEEE-CCCCchhhhhhhhhhcccccccccccccccccCCHHHHHh
Confidence 3456689999999999999999985 5566 89999 987532 1111 1122 122347889999
Q ss_pred CCCEEEEeeC-cccHHHHHH-HhccccCCCCEEEEecCC--CCHHHHHHhhC
Q 024016 71 YSDVVVFSVK-PQVVKDVAM-QIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (274)
Q Consensus 71 ~aDiIil~v~-~~~~~~v~~-~i~~~l~~~~~vis~~~g--~~~~~l~~~~~ 118 (274)
+||+|++++| .+..+.++. +....+++|.++|++.=| +..+.+.+.+.
T Consensus 236 ~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~ 287 (386)
T PLN02306 236 EADVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLK 287 (386)
T ss_pred hCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHH
Confidence 9999999998 445666663 455678999999998744 33456666554
No 148
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=98.53 E-value=2.2e-07 Score=69.72 Aligned_cols=97 Identities=25% Similarity=0.350 Sum_probs=66.0
Q ss_pred CeEEEEcc-cHHHHHHHHHHHh-CCCCCCCcEEEEeCCCHHH-----HHHHH---HcCceeccCchhhccCCCEEEEeeC
Q 024016 11 FILGFIGA-GKMAESIAKGVAK-SGVLPPDRICTAVHSNLKR-----RDAFE---SIGVKVLSDNNAVVEYSDVVVFSVK 80 (274)
Q Consensus 11 ~~IgiIG~-G~mG~~~a~~L~~-~g~~~~~~v~v~~~r~~~~-----~~~l~---~~g~~~~~~~~~~~~~aDiIil~v~ 80 (274)
|||+|+|+ |+||+.+++.+.+ .++ ++....+|+++. .-.+. ..|+.+.++..++.+.+|+||-++.
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~----~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT~ 76 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGF----ELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFTN 76 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTE----EEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES-
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCc----EEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcCC
Confidence 58999999 9999999999998 555 655443777621 11222 2467778888899989999999998
Q ss_pred cccHHHHHHHhccccCCCCEEEEecCCCCHHHHH
Q 024016 81 PQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQ 114 (274)
Q Consensus 81 ~~~~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~ 114 (274)
|+.+.+.++....+ +..+|.-+.|.+.++++
T Consensus 77 p~~~~~~~~~~~~~---g~~~ViGTTG~~~~~~~ 107 (124)
T PF01113_consen 77 PDAVYDNLEYALKH---GVPLVIGTTGFSDEQID 107 (124)
T ss_dssp HHHHHHHHHHHHHH---T-EEEEE-SSSHHHHHH
T ss_pred hHHhHHHHHHHHhC---CCCEEEECCCCCHHHHH
Confidence 88887777665543 55677667787755443
No 149
>PRK06932 glycerate dehydrogenase; Provisional
Probab=98.52 E-value=4e-07 Score=79.26 Aligned_cols=101 Identities=14% Similarity=0.236 Sum_probs=74.2
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccHH
Q 024016 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVVK 85 (274)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~~ 85 (274)
....++|||||+|++|+.+++.+..-|. +|..| +|.... . .... ..+..+++++||+|++++| ....+
T Consensus 144 ~l~gktvgIiG~G~IG~~va~~l~~fg~----~V~~~-~~~~~~--~---~~~~-~~~l~ell~~sDiv~l~~Plt~~T~ 212 (314)
T PRK06932 144 DVRGSTLGVFGKGCLGTEVGRLAQALGM----KVLYA-EHKGAS--V---CREG-YTPFEEVLKQADIVTLHCPLTETTQ 212 (314)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhcCCC----EEEEE-CCCccc--c---cccc-cCCHHHHHHhCCEEEEcCCCChHHh
Confidence 3456899999999999999999987776 89888 876421 1 1111 2467899999999999998 44566
Q ss_pred HHH-HHhccccCCCCEEEEecCC--CCHHHHHHhhC
Q 024016 86 DVA-MQIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (274)
Q Consensus 86 ~v~-~~i~~~l~~~~~vis~~~g--~~~~~l~~~~~ 118 (274)
.++ .+....+++|.++|++.-| +..+.+.+.+.
T Consensus 213 ~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~ 248 (314)
T PRK06932 213 NLINAETLALMKPTAFLINTGRGPLVDEQALLDALE 248 (314)
T ss_pred cccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHH
Confidence 666 3455668899999998744 34556766665
No 150
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=98.51 E-value=4.7e-07 Score=76.69 Aligned_cols=98 Identities=21% Similarity=0.259 Sum_probs=69.2
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhC-CCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccHHHHH
Q 024016 11 FILGFIGA-GKMAESIAKGVAKS-GVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVA 88 (274)
Q Consensus 11 ~~IgiIG~-G~mG~~~a~~L~~~-g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v~ 88 (274)
+||+|||+ |+||..+++.+.+. ++ ++...+++++++.......++...++..++++++|+|+.+++|+...+++
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~----elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~p~~~~~~~ 77 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDL----ELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTTPEATLENL 77 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCC----EEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECCCHHHHHHHH
Confidence 69999998 99999999888764 44 65543388877654443356666678888787899999999998887777
Q ss_pred HHhccccCCCCEEEEecCCCCHHHHHH
Q 024016 89 MQIRPLLSRKKLLVSVAAGVKLKDLQE 115 (274)
Q Consensus 89 ~~i~~~l~~~~~vis~~~g~~~~~l~~ 115 (274)
..... .|+-++.-+.|.+.+...+
T Consensus 78 ~~al~---~G~~vvigttG~s~~~~~~ 101 (257)
T PRK00048 78 EFALE---HGKPLVIGTTGFTEEQLAE 101 (257)
T ss_pred HHHHH---cCCCEEEECCCCCHHHHHH
Confidence 65543 3444444456777665543
No 151
>PRK06487 glycerate dehydrogenase; Provisional
Probab=98.51 E-value=6.6e-07 Score=78.04 Aligned_cols=100 Identities=16% Similarity=0.233 Sum_probs=74.3
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccHH
Q 024016 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVVK 85 (274)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~~ 85 (274)
....++|||||+|++|+.+|+.+..-|. +|..| +|.... . ... ..+..++++.||+|++++| ....+
T Consensus 145 ~l~gktvgIiG~G~IG~~vA~~l~~fgm----~V~~~-~~~~~~-~-----~~~-~~~l~ell~~sDiv~l~lPlt~~T~ 212 (317)
T PRK06487 145 ELEGKTLGLLGHGELGGAVARLAEAFGM----RVLIG-QLPGRP-A-----RPD-RLPLDELLPQVDALTLHCPLTEHTR 212 (317)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhhCCC----EEEEE-CCCCCc-c-----ccc-ccCHHHHHHhCCEEEECCCCChHHh
Confidence 4466899999999999999999987777 89999 886321 1 111 2367889999999999998 44566
Q ss_pred HHH-HHhccccCCCCEEEEecCC--CCHHHHHHhhC
Q 024016 86 DVA-MQIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (274)
Q Consensus 86 ~v~-~~i~~~l~~~~~vis~~~g--~~~~~l~~~~~ 118 (274)
.++ .+....++++.++|++.=| +..+.+.+.+.
T Consensus 213 ~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~ 248 (317)
T PRK06487 213 HLIGARELALMKPGALLINTARGGLVDEQALADALR 248 (317)
T ss_pred cCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHH
Confidence 666 3455668899999998744 34456666665
No 152
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=98.48 E-value=1.2e-05 Score=66.85 Aligned_cols=163 Identities=14% Similarity=0.207 Sum_probs=110.2
Q ss_pred CceeccCchhhccCCCEEEEeeCccc-HHHHHHHhccccCCCCEEEEecCCCCHHHHHHhh---C--CCceEEEcCCcHH
Q 024016 58 GVKVLSDNNAVVEYSDVVVFSVKPQV-VKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWT---G--HSRFIRVMPNTPS 131 (274)
Q Consensus 58 g~~~~~~~~~~~~~aDiIil~v~~~~-~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~---~--~~~~~~~~p~~~~ 131 (274)
|+++.+|..|+++++|++|+-+|-.. -.++++++.++++.|.+|.++ .++++-.+.+.+ + +..+.++||....
T Consensus 126 GvkVtsDD~EAv~~aei~I~ftPfG~~q~~Iikkii~~lpEgAII~~t-CTIpt~~ly~ilE~l~R~DvgVsS~HPaaVP 204 (340)
T TIGR01723 126 GLKVTTDDREAVEDADIIITWLPKGNKQPDIIKKFIDDIPEGAIVTHA-CTIPTTKFAKIFEDLGREDLNVTSYHPGCVP 204 (340)
T ss_pred CceEecCcHHHhcCCCEEEEEcCCCCCchHHHHHHHhhCCCCCEEecc-ccCChHHHHHHHHhhCcccCCeeccCCCCCC
Confidence 67788888999999999999999665 578889999999999876654 445554443333 2 3567777776432
Q ss_pred hhcCCceEEecCCCCCHHHHHHHHHHhhhcCCe-EEcCccchhhHHHhhcchHHHHHHHHHHHHH---HH-HHcCCCHHH
Q 024016 132 AVGEAATVMSLGGTATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALAD---GG-VAAGLPREL 206 (274)
Q Consensus 132 ~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~g~~-~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e---~~-~~~Gl~~~~ 206 (274)
...++..++ -.-.++++++++.++.+..|+. +.++.+......-+++ ...+....++.+ .. +-.|-+.+.
T Consensus 205 gt~~q~Yi~--egyAtEEqI~klveL~~sa~k~ay~~PA~LvspV~DMgS---~VTAv~~aGiL~Y~~~~t~IlgAP~~m 279 (340)
T TIGR01723 205 EMKGQVYIA--EGYASEEAVNKLYELGKKARGKAFKMPANLLGPVCDMCS---AVTAIVYAGLLAYRDAVTKILGAPADF 279 (340)
T ss_pred CCCCceEee--cccCCHHHHHHHHHHHHHhCCCeeecchhhccchhhHHH---HHHHHHHHHHHHHHHHHHHHhcCcHHH
Confidence 222222222 2235789999999999999976 7788776655544432 222222333332 22 347888888
Q ss_pred HHHHHHHHHHHHHHHHHhcC
Q 024016 207 ALGLASQTVLGAASMVTKSG 226 (274)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~ 226 (274)
+.+.+..++...+.+++.+|
T Consensus 280 iq~qa~eaL~tmasLme~~G 299 (340)
T TIGR01723 280 AQMMADEALTQIHNLMEEKG 299 (340)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 88888888888888877655
No 153
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=98.46 E-value=1.1e-06 Score=73.38 Aligned_cols=81 Identities=20% Similarity=0.268 Sum_probs=63.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcE-EEEeCCCHHHHHHHHHcCceeccCchhh-ccCCCEEEEeeCcccHHHH
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRI-CTAVHSNLKRRDAFESIGVKVLSDNNAV-VEYSDVVVFSVKPQVVKDV 87 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v-~v~~~r~~~~~~~l~~~g~~~~~~~~~~-~~~aDiIil~v~~~~~~~v 87 (274)
.+||||||+|+||..++..|.+.+. ...++ .++ +|++++.+.+.+. +.++++..++ ..++|+|+-|-.++.+++.
T Consensus 2 ~~rvgiIG~GaIG~~va~~l~~~~~-~~~~l~~V~-~~~~~~~~~~~~~-~~~~~~l~~ll~~~~DlVVE~A~~~av~e~ 78 (267)
T PRK13301 2 THRIAFIGLGAIASDVAAGLLADAA-QPCQLAALT-RNAADLPPALAGR-VALLDGLPGLLAWRPDLVVEAAGQQAIAEH 78 (267)
T ss_pred ceEEEEECccHHHHHHHHHHhcCCC-CceEEEEEe-cCCHHHHHHhhcc-CcccCCHHHHhhcCCCEEEECCCHHHHHHH
Confidence 3799999999999999999865432 11244 455 8998888877654 6677888886 6789999999999999998
Q ss_pred HHHhcc
Q 024016 88 AMQIRP 93 (274)
Q Consensus 88 ~~~i~~ 93 (274)
...++.
T Consensus 79 ~~~iL~ 84 (267)
T PRK13301 79 AEGCLT 84 (267)
T ss_pred HHHHHh
Confidence 887764
No 154
>PRK07340 ornithine cyclodeaminase; Validated
Probab=98.46 E-value=1.5e-06 Score=75.44 Aligned_cols=87 Identities=24% Similarity=0.235 Sum_probs=66.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHh-CCCCCCCcEEEEeCCCHHHHHHHHH----cCcee-ccCchhhccCCCEEEEeeCcc
Q 024016 9 ESFILGFIGAGKMAESIAKGVAK-SGVLPPDRICTAVHSNLKRRDAFES----IGVKV-LSDNNAVVEYSDVVVFSVKPQ 82 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~-~g~~~~~~v~v~~~r~~~~~~~l~~----~g~~~-~~~~~~~~~~aDiIil~v~~~ 82 (274)
+..+++|||+|.+|...+..+.. .+. .+|.+| +|++++++.+.+ .+..+ ..+..+++.++|+|+.|+|..
T Consensus 124 ~~~~v~IiGaG~qa~~~~~al~~~~~~---~~v~v~-~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~ 199 (304)
T PRK07340 124 PPGDLLLIGTGVQARAHLEAFAAGLPV---RRVWVR-GRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSR 199 (304)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCCC---CEEEEE-cCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCC
Confidence 45799999999999999999975 343 489999 999999888776 23333 356778899999999999866
Q ss_pred cHHHHHHHhccccCCCCEEEEe
Q 024016 83 VVKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 83 ~~~~v~~~i~~~l~~~~~vis~ 104 (274)
. .++.. .++||+.|..+
T Consensus 200 ~--Pl~~~---~~~~g~hi~~i 216 (304)
T PRK07340 200 T--PVYPE---AARAGRLVVAV 216 (304)
T ss_pred C--ceeCc---cCCCCCEEEec
Confidence 4 33332 36788876655
No 155
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=98.44 E-value=2.2e-06 Score=65.74 Aligned_cols=95 Identities=23% Similarity=0.385 Sum_probs=65.5
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH--------c--CceeccCchhhccCCCEEEEee
Q 024016 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES--------I--GVKVLSDNNAVVEYSDVVVFSV 79 (274)
Q Consensus 11 ~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~--------~--g~~~~~~~~~~~~~aDiIil~v 79 (274)
|||+|||+ |++|++++..|...+.. .++.++ |+++++++.... . ...+..+..+.+++||+|+++.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~--~ei~L~-D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvita 77 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLA--DEIVLI-DINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITA 77 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTS--SEEEEE-ESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETT
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCC--CceEEe-ccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEec
Confidence 69999999 99999999999999874 379999 999776543321 1 2344456677789999999986
Q ss_pred --C--cc-c-----------HHHHHHHhccccCCCCEEEEecCCCC
Q 024016 80 --K--PQ-V-----------VKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 80 --~--~~-~-----------~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
| +. . ++++.+.+..+- |+.+++-.++++.
T Consensus 78 g~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~-p~~~vivvtNPvd 122 (141)
T PF00056_consen 78 GVPRKPGMSRLDLLEANAKIVKEIAKKIAKYA-PDAIVIVVTNPVD 122 (141)
T ss_dssp STSSSTTSSHHHHHHHHHHHHHHHHHHHHHHS-TTSEEEE-SSSHH
T ss_pred cccccccccHHHHHHHhHhHHHHHHHHHHHhC-CccEEEEeCCcHH
Confidence 2 21 1 233334455543 6677777777654
No 156
>PLN00203 glutamyl-tRNA reductase
Probab=98.43 E-value=1.6e-06 Score=79.99 Aligned_cols=96 Identities=25% Similarity=0.347 Sum_probs=69.5
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-c-Cce----eccCchhhccCCCEEEEeeC-
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-I-GVK----VLSDNNAVVEYSDVVVFSVK- 80 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~-g~~----~~~~~~~~~~~aDiIil~v~- 80 (274)
....+|+|||+|.||..+++.|...|. .+|+++ +|++++++.+.+ . +.. ..++..+.+.++|+||.||+
T Consensus 264 l~~kkVlVIGAG~mG~~~a~~L~~~G~---~~V~V~-nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~s 339 (519)
T PLN00203 264 HASARVLVIGAGKMGKLLVKHLVSKGC---TKMVVV-NRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTSS 339 (519)
T ss_pred CCCCEEEEEeCHHHHHHHHHHHHhCCC---CeEEEE-eCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccCC
Confidence 456799999999999999999999885 369999 999999988876 3 332 22455677889999999985
Q ss_pred --cccHHHHHHHhcccc---CCCCEEEEecCC
Q 024016 81 --PQVVKDVAMQIRPLL---SRKKLLVSVAAG 107 (274)
Q Consensus 81 --~~~~~~v~~~i~~~l---~~~~~vis~~~g 107 (274)
|-...+.++.+.+.- ....++|++.-+
T Consensus 340 ~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvP 371 (519)
T PLN00203 340 ETPLFLKEHVEALPPASDTVGGKRLFVDISVP 371 (519)
T ss_pred CCCeeCHHHHHHhhhcccccCCCeEEEEeCCC
Confidence 333556666654211 122477787544
No 157
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=98.42 E-value=8.1e-07 Score=76.80 Aligned_cols=87 Identities=11% Similarity=0.180 Sum_probs=57.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhC-CCCCCCcEE-EEeCCCH-HHHHHHHHcCceeccCchhhccCCCEEEEeeCcccH
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKS-GVLPPDRIC-TAVHSNL-KRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVV 84 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~-g~~~~~~v~-v~~~r~~-~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~ 84 (274)
|+++||+|||+|+||...+..+.++ ++ ++. +| +|++ ++.. ...++....+..+...+.|+|++|+|+..-
T Consensus 1 M~kIRVgIVG~GnIGr~~a~al~~~pd~----ELVgV~-dr~~~~~~~--~~~~v~~~~d~~e~l~~iDVViIctPs~th 73 (324)
T TIGR01921 1 MSKIRAAIVGYGNLGRSVEKAIQQQPDM----ELVGVF-SRRGAETLD--TETPVYAVADDEKHLDDVDVLILCMGSATD 73 (324)
T ss_pred CCCcEEEEEeecHHHHHHHHHHHhCCCc----EEEEEE-cCCcHHHHh--hcCCccccCCHHHhccCCCEEEEcCCCccC
Confidence 3468999999999999999999865 44 665 56 8885 4332 123443334556667789999999986654
Q ss_pred HHHHHHhccccCCCCEEEEe
Q 024016 85 KDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~ 104 (274)
.+....+ +..|.-+|+.
T Consensus 74 ~~~~~~~---L~aG~NVV~s 90 (324)
T TIGR01921 74 IPEQAPY---FAQFANTVDS 90 (324)
T ss_pred HHHHHHH---HHcCCCEEEC
Confidence 3333222 3345555644
No 158
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=98.41 E-value=2e-05 Score=65.43 Aligned_cols=163 Identities=13% Similarity=0.207 Sum_probs=109.5
Q ss_pred CceeccCchhhccCCCEEEEeeCccc-HHHHHHHhccccCCCCEEEEecCCCCHHHHHHhh---C--CCceEEEcCCcHH
Q 024016 58 GVKVLSDNNAVVEYSDVVVFSVKPQV-VKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWT---G--HSRFIRVMPNTPS 131 (274)
Q Consensus 58 g~~~~~~~~~~~~~aDiIil~v~~~~-~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~---~--~~~~~~~~p~~~~ 131 (274)
|+++.+|..|+++++|++|+-+|-.. -.++++++.++++.|.+|.++ .++++-.+.+.+ + +..+.++||....
T Consensus 128 GvkVtsDD~EAvk~aei~I~ftPfG~~t~~Iikki~~~ipEgAII~~t-CTIpt~~ly~~le~l~R~DvgIsS~HPaaVP 206 (342)
T PRK00961 128 GLKVTTDDREAVADADIVITWLPKGGMQPDIIEKFADDIKEGAIVTHA-CTIPTTKFAKIFKDLGRDDLNVTSYHPGAVP 206 (342)
T ss_pred CceEecCcHHHhcCCCEEEEecCCCCCchHHHHHHHhhCCCCCEEecc-ccCCHHHHHHHHHHhCcccCCeeccCCCCCC
Confidence 67788888999999999999999665 578889999999999876654 456654443333 2 3567777775321
Q ss_pred hhcCCceEEecCCCCCHHHHHHHHHHhhhcCCe-EEcCccchhhHHHhhcchHHHHHHHHHHHHH---HH-HHcCCCHHH
Q 024016 132 AVGEAATVMSLGGTATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALAD---GG-VAAGLPREL 206 (274)
Q Consensus 132 ~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~g~~-~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e---~~-~~~Gl~~~~ 206 (274)
.. .|...+.- .-.++++++++.++.+..|+. +.++.+....+.-+++ ...+....++.+ .. +-.|-+.+.
T Consensus 207 gt-~Gq~~i~e-gyAtEEqI~klveL~~sa~k~ay~~PA~lvspV~DMgS---~VTAv~~aGiL~Y~~~~tqIlgAP~~m 281 (342)
T PRK00961 207 EM-KGQVYIAE-GYADEEAVEKLYEIGKKARGNAFKMPANLIGPVCDMCS---AVTAIVYAGILAYRDAVTQILGAPADF 281 (342)
T ss_pred CC-CCceeccc-ccCCHHHHHHHHHHHHHhCCCeeecchhhcchhhhHHH---HHHHHHHHHHHHHHHHHHHHhcCcHHH
Confidence 11 13332221 234789999999999999976 7788776655544432 222222333332 22 347888888
Q ss_pred HHHHHHHHHHHHHHHHHhcC
Q 024016 207 ALGLASQTVLGAASMVTKSG 226 (274)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~ 226 (274)
+.+.+..++...+.+++.+|
T Consensus 282 ie~qa~eaL~tmasLme~~G 301 (342)
T PRK00961 282 AQMMADEALTQITALMREEG 301 (342)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 88888888888888877655
No 159
>PRK08618 ornithine cyclodeaminase; Validated
Probab=98.41 E-value=1.9e-06 Score=75.50 Aligned_cols=87 Identities=18% Similarity=0.288 Sum_probs=66.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhC-CCCCCCcEEEEeCCCHHHHHHHHH-----cCc--eeccCchhhccCCCEEEEeeC
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKS-GVLPPDRICTAVHSNLKRRDAFES-----IGV--KVLSDNNAVVEYSDVVVFSVK 80 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~-g~~~~~~v~v~~~r~~~~~~~l~~-----~g~--~~~~~~~~~~~~aDiIil~v~ 80 (274)
...+++|||+|.+|...+..+... +. .+|.+| +|++++.+++.+ .++ ...++..+++.++|+|+.|+|
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~---~~v~v~-~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~ 201 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDI---ERVRVY-SRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTN 201 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCc---cEEEEE-CCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccC
Confidence 456899999999999998887643 32 489999 999999887765 244 345677888999999999998
Q ss_pred cccHHHHHHHhccccCCCCEEEEe
Q 024016 81 PQVVKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 81 ~~~~~~v~~~i~~~l~~~~~vis~ 104 (274)
... .++. ..+++|+.|+++
T Consensus 202 s~~--p~i~---~~l~~G~hV~~i 220 (325)
T PRK08618 202 AKT--PVFS---EKLKKGVHINAV 220 (325)
T ss_pred CCC--cchH---HhcCCCcEEEec
Confidence 663 3333 346899887766
No 160
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=98.40 E-value=1.9e-06 Score=74.89 Aligned_cols=95 Identities=18% Similarity=0.292 Sum_probs=65.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH--------cC--ceeccCchhhccCCCEEEEeeC
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES--------IG--VKVLSDNNAVVEYSDVVVFSVK 80 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~--------~g--~~~~~~~~~~~~~aDiIil~v~ 80 (274)
+||+|||+|.+|++++..|...|.. .+|.++ ||++++++.+.. .+ ..+.....+.+.+||+||+++.
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~--~ei~l~-D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag 77 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIA--DELVLI-DINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAG 77 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCC--CEEEEE-eCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccC
Confidence 4899999999999999999998841 279999 999887765443 12 2233334456789999999984
Q ss_pred c----c------------cHHHHHHHhccccCCCCEEEEecCCCC
Q 024016 81 P----Q------------VVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 81 ~----~------------~~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
. . .++++.+.+..+ .|+.+++..+++..
T Consensus 78 ~~~~~g~~R~dll~~N~~i~~~~~~~i~~~-~~~~~vivvsNP~d 121 (306)
T cd05291 78 APQKPGETRLDLLEKNAKIMKSIVPKIKAS-GFDGIFLVASNPVD 121 (306)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEecChHH
Confidence 2 1 134444555554 45667777767654
No 161
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=98.37 E-value=1.5e-06 Score=73.91 Aligned_cols=89 Identities=16% Similarity=0.177 Sum_probs=58.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC--HHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccHHHHH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN--LKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVA 88 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~--~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v~ 88 (274)
+||||||+|+||..+++.+.+.... ++...+++. .++.......++.++++..++..+.|+|+.|+++....+..
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~---~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~~~~e~~ 78 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDL---RVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHAALKEHV 78 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCc---eEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHHHHHHHH
Confidence 6999999999999999999875321 443332443 23322222236667777776645689999999988777766
Q ss_pred HHhccccCCCCEEEEec
Q 024016 89 MQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 89 ~~i~~~l~~~~~vis~~ 105 (274)
.... ..|+-++..+
T Consensus 79 ~~aL---~aGk~Vvi~s 92 (265)
T PRK13303 79 VPIL---KAGIDCAVIS 92 (265)
T ss_pred HHHH---HcCCCEEEeC
Confidence 6554 3444455443
No 162
>PRK06823 ornithine cyclodeaminase; Validated
Probab=98.37 E-value=3.1e-06 Score=73.64 Aligned_cols=90 Identities=10% Similarity=0.136 Sum_probs=68.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH----cCc--eeccCchhhccCCCEEEEeeCcc
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES----IGV--KVLSDNNAVVEYSDVVVFSVKPQ 82 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~----~g~--~~~~~~~~~~~~aDiIil~v~~~ 82 (274)
+..+++|||+|..+...++.+... + +..+|.+| +|++++++.+.+ .++ .++++.++++++||||+.||+..
T Consensus 127 d~~~l~iiG~G~qA~~~~~a~~~v-~-~i~~v~v~-~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s~ 203 (315)
T PRK06823 127 HVSAIGIVGTGIQARMQLMYLKNV-T-DCRQLWVW-GRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPSR 203 (315)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhc-C-CCCEEEEE-CCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCCC
Confidence 457899999999999999988764 2 45699999 999999887765 243 44678889999999999999755
Q ss_pred cHHHHHHHhccccCCCCEEEEec
Q 024016 83 VVKDVAMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 83 ~~~~v~~~i~~~l~~~~~vis~~ 105 (274)
. .+++. ..++||+.|..+.
T Consensus 204 ~--P~~~~--~~l~~G~hi~~iG 222 (315)
T PRK06823 204 E--PLLQA--EDIQPGTHITAVG 222 (315)
T ss_pred C--ceeCH--HHcCCCcEEEecC
Confidence 3 33321 2467888777653
No 163
>PRK06223 malate dehydrogenase; Reviewed
Probab=98.36 E-value=2.8e-06 Score=73.92 Aligned_cols=94 Identities=21% Similarity=0.241 Sum_probs=64.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH----H----c--Ccee--ccCchhhccCCCEEEE
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE----S----I--GVKV--LSDNNAVVEYSDVVVF 77 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~----~----~--g~~~--~~~~~~~~~~aDiIil 77 (274)
++||+|||+|.||..++..+...|+ . +|.++ |+++++.+... . . ..++ ..+. +.+++||+||+
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~~~--~-ev~L~-D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii 76 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALKEL--G-DVVLF-DIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVI 76 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC--e-EEEEE-ECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEE
Confidence 3699999999999999999998875 2 79999 99876653221 1 1 1233 2333 56889999999
Q ss_pred ee--Cc--------------ccHHHHHHHhccccCCCCEEEEecCCCC
Q 024016 78 SV--KP--------------QVVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 78 ~v--~~--------------~~~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
++ |. +.++++++++.+.. ++.++|..+++..
T Consensus 77 ~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~-~~~~viv~tNP~d 123 (307)
T PRK06223 77 TAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYA-PDAIVIVVTNPVD 123 (307)
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHH
Confidence 96 22 22556666676665 5566776767654
No 164
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=98.36 E-value=4e-06 Score=72.73 Aligned_cols=94 Identities=17% Similarity=0.176 Sum_probs=64.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHH-H---HHH------cC--ceeccCchhhccCCCEEEEe
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD-A---FES------IG--VKVLSDNNAVVEYSDVVVFS 78 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~-~---l~~------~g--~~~~~~~~~~~~~aDiIil~ 78 (274)
|||+|||+|.||..+|..+...|+. +|.++ |++++..+ . +.. .. ++...+..+ +++||+||++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~---~Vvlv-Di~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIit 76 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELA---DLVLL-DVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVIT 76 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCC---eEEEE-eCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEc
Confidence 5899999999999999999998862 68899 88665433 1 111 11 223345554 7899999999
Q ss_pred eC--c--------------ccHHHHHHHhccccCCCCEEEEecCCCCH
Q 024016 79 VK--P--------------QVVKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (274)
Q Consensus 79 v~--~--------------~~~~~v~~~i~~~l~~~~~vis~~~g~~~ 110 (274)
+. . +.++++.+++.++. ++..+|..+++...
T Consensus 77 ag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~-p~~~iIv~tNP~di 123 (305)
T TIGR01763 77 AGLPRKPGMSREDLLSMNAGIVREVTGRIMEHS-PNPIIVVVSNPLDA 123 (305)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHH
Confidence 85 1 12445556666664 66778888887653
No 165
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=98.35 E-value=2.5e-06 Score=75.90 Aligned_cols=94 Identities=26% Similarity=0.435 Sum_probs=67.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCcee--ccCchhhccCCCEEEEeeC--ccc
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKV--LSDNNAVVEYSDVVVFSVK--PQV 83 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~--~~~~~~~~~~aDiIil~v~--~~~ 83 (274)
...++.|||+|-||...++.|..+|. .+|++. ||+.++++.|++ .|..+ .++..+.+.++|+||.||. ...
T Consensus 177 ~~~~vlvIGAGem~~lva~~L~~~g~---~~i~Ia-NRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTsa~~~i 252 (414)
T COG0373 177 KDKKVLVIGAGEMGELVAKHLAEKGV---KKITIA-NRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTSAPHPI 252 (414)
T ss_pred ccCeEEEEcccHHHHHHHHHHHhCCC---CEEEEE-cCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecCCCccc
Confidence 45789999999999999999999996 389999 999999999987 66443 3555677889999999983 233
Q ss_pred H-HHHHHHhccccCCCCEEEEecCC
Q 024016 84 V-KDVAMQIRPLLSRKKLLVSVAAG 107 (274)
Q Consensus 84 ~-~~v~~~i~~~l~~~~~vis~~~g 107 (274)
+ .+-+...... ++.-++|++..+
T Consensus 253 i~~~~ve~a~~~-r~~~livDiavP 276 (414)
T COG0373 253 ITREMVERALKI-RKRLLIVDIAVP 276 (414)
T ss_pred cCHHHHHHHHhc-ccCeEEEEecCC
Confidence 2 2223322211 222467777544
No 166
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=98.35 E-value=2.4e-06 Score=77.28 Aligned_cols=92 Identities=13% Similarity=0.113 Sum_probs=70.2
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccHHH
Q 024016 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKD 86 (274)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~~ 86 (274)
....++|+|||+|.+|..+|+.+...|. +|+++ ++++.+.......|+... +..++++.+|+|++++....
T Consensus 251 ~LaGKtVgVIG~G~IGr~vA~rL~a~Ga----~ViV~-e~dp~~a~~A~~~G~~~~-~leell~~ADIVI~atGt~~--- 321 (476)
T PTZ00075 251 MIAGKTVVVCGYGDVGKGCAQALRGFGA----RVVVT-EIDPICALQAAMEGYQVV-TLEDVVETADIFVTATGNKD--- 321 (476)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-eCCchhHHHHHhcCceec-cHHHHHhcCCEEEECCCccc---
Confidence 4456899999999999999999999998 89999 999877654444677653 56788999999999974322
Q ss_pred HHH-HhccccCCCCEEEEecCC
Q 024016 87 VAM-QIRPLLSRKKLLVSVAAG 107 (274)
Q Consensus 87 v~~-~i~~~l~~~~~vis~~~g 107 (274)
++. +....++++.+++++.-+
T Consensus 322 iI~~e~~~~MKpGAiLINvGr~ 343 (476)
T PTZ00075 322 IITLEHMRRMKNNAIVGNIGHF 343 (476)
T ss_pred ccCHHHHhccCCCcEEEEcCCC
Confidence 232 334456899999987544
No 167
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=98.35 E-value=1.5e-06 Score=78.90 Aligned_cols=95 Identities=27% Similarity=0.342 Sum_probs=66.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCcee--ccCchhhccCCCEEEEeeCccc--
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKV--LSDNNAVVEYSDVVVFSVKPQV-- 83 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~--~~~~~~~~~~aDiIil~v~~~~-- 83 (274)
..++|+|||+|.||..+++.|...|. .+|+++ +|++++++.+.+ .|..+ ..+..+.+.++|+||.|++...
T Consensus 181 ~~~~vlViGaG~iG~~~a~~L~~~G~---~~V~v~-~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s~~~~ 256 (423)
T PRK00045 181 SGKKVLVIGAGEMGELVAKHLAEKGV---RKITVA-NRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGAPHPI 256 (423)
T ss_pred cCCEEEEECchHHHHHHHHHHHHCCC---CeEEEE-eCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCCCCcE
Confidence 45799999999999999999998885 379999 999999887766 45332 2345566789999999996432
Q ss_pred -HHHHHHHhc-cccCCCCEEEEecCC
Q 024016 84 -VKDVAMQIR-PLLSRKKLLVSVAAG 107 (274)
Q Consensus 84 -~~~v~~~i~-~~l~~~~~vis~~~g 107 (274)
..+.++... ..-..+.+++++..+
T Consensus 257 i~~~~l~~~~~~~~~~~~vviDla~P 282 (423)
T PRK00045 257 IGKGMVERALKARRHRPLLLVDLAVP 282 (423)
T ss_pred EcHHHHHHHHhhccCCCeEEEEeCCC
Confidence 233443322 111234677787543
No 168
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=98.35 E-value=8e-07 Score=66.41 Aligned_cols=90 Identities=11% Similarity=0.163 Sum_probs=61.0
Q ss_pred eEEEEc-ccHHHHHHHHHHHhCCCCCCCcE-EEEeCCCHHHHHHHHH-----c---CceeccCchhhccCCCEEEEeeCc
Q 024016 12 ILGFIG-AGKMAESIAKGVAKSGVLPPDRI-CTAVHSNLKRRDAFES-----I---GVKVLSDNNAVVEYSDVVVFSVKP 81 (274)
Q Consensus 12 ~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v-~v~~~r~~~~~~~l~~-----~---g~~~~~~~~~~~~~aDiIil~v~~ 81 (274)
||+||| +|.+|..+.+.|.++-+ .++ .++ .++.+.-..+.. . ...+.+...+...++|+||+|+|.
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~---~e~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~ 76 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPD---FELVALV-SSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPH 76 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTST---EEEEEEE-ESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCC---ccEEEee-eeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCch
Confidence 799999 99999999999988432 243 445 665522222222 1 122333234456899999999999
Q ss_pred ccHHHHHHHhccccCCCCEEEEecCCC
Q 024016 82 QVVKDVAMQIRPLLSRKKLLVSVAAGV 108 (274)
Q Consensus 82 ~~~~~v~~~i~~~l~~~~~vis~~~g~ 108 (274)
....++...+. .+|..||+.++..
T Consensus 77 ~~~~~~~~~~~---~~g~~ViD~s~~~ 100 (121)
T PF01118_consen 77 GASKELAPKLL---KAGIKVIDLSGDF 100 (121)
T ss_dssp HHHHHHHHHHH---HTTSEEEESSSTT
T ss_pred hHHHHHHHHHh---hCCcEEEeCCHHH
Confidence 99888887763 5778899987765
No 169
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=98.34 E-value=3.4e-06 Score=73.02 Aligned_cols=89 Identities=20% Similarity=0.286 Sum_probs=67.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-----cC--ceeccCchhhccCCCEEEEeeCc
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----IG--VKVLSDNNAVVEYSDVVVFSVKP 81 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-----~g--~~~~~~~~~~~~~aDiIil~v~~ 81 (274)
+..+++|||+|..|...++.+..- + +..+|.+| +|++++++.+.+ .| +.+++++++++.+||||+.||+.
T Consensus 116 da~~l~iiGaG~QA~~~~~a~~~v-~-~i~~v~v~-~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s 192 (301)
T PRK06407 116 NVENFTIIGSGFQAETQLEGMASV-Y-NPKRIRVY-SRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNS 192 (301)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhc-C-CCCEEEEE-CCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCC
Confidence 457899999999999999988874 2 45689999 999999888765 24 45668899999999999999986
Q ss_pred ccHHHHHHHhccccCCCCEEEEe
Q 024016 82 QVVKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 82 ~~~~~v~~~i~~~l~~~~~vis~ 104 (274)
.. .++. ...++||..|..+
T Consensus 193 ~~--P~~~--~~~l~pg~hV~ai 211 (301)
T PRK06407 193 DT--PIFN--RKYLGDEYHVNLA 211 (301)
T ss_pred CC--cEec--HHHcCCCceEEec
Confidence 53 3331 1245788665544
No 170
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=98.33 E-value=5.3e-06 Score=64.36 Aligned_cols=98 Identities=16% Similarity=0.215 Sum_probs=65.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCccc-H-HH
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQV-V-KD 86 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~-~-~~ 86 (274)
..+++.|+|.|..|+.+|+.|...|- +|+|+ +++|-++-+..-.|.++. +..+++..+|++|.++-... + .+
T Consensus 22 ~Gk~vvV~GYG~vG~g~A~~lr~~Ga----~V~V~-e~DPi~alqA~~dGf~v~-~~~~a~~~adi~vtaTG~~~vi~~e 95 (162)
T PF00670_consen 22 AGKRVVVIGYGKVGKGIARALRGLGA----RVTVT-EIDPIRALQAAMDGFEVM-TLEEALRDADIFVTATGNKDVITGE 95 (162)
T ss_dssp TTSEEEEE--SHHHHHHHHHHHHTT-----EEEEE--SSHHHHHHHHHTT-EEE--HHHHTTT-SEEEE-SSSSSSB-HH
T ss_pred CCCEEEEeCCCcccHHHHHHHhhCCC----EEEEE-ECChHHHHHhhhcCcEec-CHHHHHhhCCEEEECCCCccccCHH
Confidence 45789999999999999999999998 99999 999977655555788875 57888999999999996543 2 34
Q ss_pred HHHHhccccCCCCEEEEecC---CCCHHHHHHh
Q 024016 87 VAMQIRPLLSRKKLLVSVAA---GVKLKDLQEW 116 (274)
Q Consensus 87 v~~~i~~~l~~~~~vis~~~---g~~~~~l~~~ 116 (274)
-+.+ ++++.++.+... .+..+.+.+.
T Consensus 96 ~~~~----mkdgail~n~Gh~d~Eid~~~L~~~ 124 (162)
T PF00670_consen 96 HFRQ----MKDGAILANAGHFDVEIDVDALEAN 124 (162)
T ss_dssp HHHH----S-TTEEEEESSSSTTSBTHHHHHTC
T ss_pred HHHH----hcCCeEEeccCcCceeEeecccccc
Confidence 4444 567766665421 2334455543
No 171
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.33 E-value=1.4e-06 Score=73.91 Aligned_cols=73 Identities=15% Similarity=0.211 Sum_probs=59.2
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccH
Q 024016 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVV 84 (274)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~ 84 (274)
+...++|+|||. |.||.+|+..|+++|+ +|++| .... .++.+.+++||+||.|++ +..+
T Consensus 155 ~l~Gk~v~vIG~S~ivG~Pla~lL~~~ga----tVtv~-~s~t--------------~~l~~~~~~ADIVI~avg~~~~v 215 (284)
T PRK14179 155 ELEGKHAVVIGRSNIVGKPMAQLLLDKNA----TVTLT-HSRT--------------RNLAEVARKADILVVAIGRGHFV 215 (284)
T ss_pred CCCCCEEEEECCCCcCcHHHHHHHHHCCC----EEEEE-CCCC--------------CCHHHHHhhCCEEEEecCccccC
Confidence 345689999999 9999999999999998 99999 4321 156778899999999996 5555
Q ss_pred HHHHHHhccccCCCCEEEEe
Q 024016 85 KDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~ 104 (274)
.... +++|+++|++
T Consensus 216 ~~~~------ik~GavVIDv 229 (284)
T PRK14179 216 TKEF------VKEGAVVIDV 229 (284)
T ss_pred CHHH------ccCCcEEEEe
Confidence 5543 6899999987
No 172
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=98.33 E-value=3.4e-06 Score=76.40 Aligned_cols=95 Identities=22% Similarity=0.315 Sum_probs=65.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCcee--ccCchhhccCCCEEEEeeCccc--
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKV--LSDNNAVVEYSDVVVFSVKPQV-- 83 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~--~~~~~~~~~~aDiIil~v~~~~-- 83 (274)
...+|+|||+|.||..+++.|...|. .+|+++ +|++++++.+.+ .|... ..+..+.+.++|+||.|++...
T Consensus 179 ~~~~VlViGaG~iG~~~a~~L~~~G~---~~V~v~-~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~s~~~i 254 (417)
T TIGR01035 179 KGKKALLIGAGEMGELVAKHLLRKGV---GKILIA-NRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTGAPHPI 254 (417)
T ss_pred cCCEEEEECChHHHHHHHHHHHHCCC---CEEEEE-eCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCCCCCce
Confidence 45799999999999999999999883 289999 999998877765 45332 2445567789999999996332
Q ss_pred -HHHHHHHhccccCCCCEEEEecCC
Q 024016 84 -VKDVAMQIRPLLSRKKLLVSVAAG 107 (274)
Q Consensus 84 -~~~v~~~i~~~l~~~~~vis~~~g 107 (274)
-.+.+......-+...+++++..+
T Consensus 255 i~~e~l~~~~~~~~~~~~viDla~P 279 (417)
T TIGR01035 255 VSKEDVERALRERTRPLFIIDIAVP 279 (417)
T ss_pred EcHHHHHHHHhcCCCCeEEEEeCCC
Confidence 223343322111122367777543
No 173
>PRK07589 ornithine cyclodeaminase; Validated
Probab=98.32 E-value=3e-06 Score=74.45 Aligned_cols=91 Identities=13% Similarity=0.107 Sum_probs=67.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH----cC--ceeccCchhhccCCCEEEEeeCcc
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES----IG--VKVLSDNNAVVEYSDVVVFSVKPQ 82 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~----~g--~~~~~~~~~~~~~aDiIil~v~~~ 82 (274)
+..+++|||+|..+...++.+..-- +..+|++| +|++++++.+.+ .+ +.++++.++++++||+|+.||++.
T Consensus 128 da~~l~iiGaG~QA~~~l~a~~~vr--~i~~V~v~-~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~ 204 (346)
T PRK07589 128 DSRTMALIGNGAQSEFQALAFKALL--GIEEIRLY-DIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADK 204 (346)
T ss_pred CCcEEEEECCcHHHHHHHHHHHHhC--CceEEEEE-eCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCC
Confidence 4568999999999999988887642 44689999 999999887765 24 445688899999999999999754
Q ss_pred cHHHHHHHhccccCCCCEEEEe
Q 024016 83 VVKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 83 ~~~~v~~~i~~~l~~~~~vis~ 104 (274)
.-..++.. ..++||+.|..+
T Consensus 205 ~~~Pvl~~--~~lkpG~hV~aI 224 (346)
T PRK07589 205 TNATILTD--DMVEPGMHINAV 224 (346)
T ss_pred CCCceecH--HHcCCCcEEEec
Confidence 32233321 245788765544
No 174
>PRK06046 alanine dehydrogenase; Validated
Probab=98.31 E-value=3.6e-06 Score=73.81 Aligned_cols=89 Identities=17% Similarity=0.280 Sum_probs=65.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-----cC--ceeccCchhhccCCCEEEEeeCc
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----IG--VKVLSDNNAVVEYSDVVVFSVKP 81 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-----~g--~~~~~~~~~~~~~aDiIil~v~~ 81 (274)
+..+|+|||+|.+|...+..+.... +...|.+| +|++++.+.+.+ .+ +....+.+++++ +|+|++|+|.
T Consensus 128 ~~~~vgiiG~G~qa~~h~~al~~~~--~i~~v~v~-~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps 203 (326)
T PRK06046 128 DSKVVGIIGAGNQARTQLLALSEVF--DLEEVRVY-DRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPS 203 (326)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhC--CceEEEEE-CCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCC
Confidence 4568999999999999999997542 23478999 999999887765 24 345667788786 9999999987
Q ss_pred ccHHHHHHHhccccCCCCEEEEec
Q 024016 82 QVVKDVAMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 82 ~~~~~v~~~i~~~l~~~~~vis~~ 105 (274)
.. .++.. ..+++|+.|.++.
T Consensus 204 ~~--P~~~~--~~l~~g~hV~~iG 223 (326)
T PRK06046 204 RK--PVVKA--EWIKEGTHINAIG 223 (326)
T ss_pred CC--cEecH--HHcCCCCEEEecC
Confidence 53 33211 2357888776653
No 175
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=98.31 E-value=5.1e-06 Score=71.20 Aligned_cols=92 Identities=12% Similarity=0.144 Sum_probs=65.1
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHH--HHHHHcCcee-ccCchhhcc-----CCCEEEEee
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRR--DAFESIGVKV-LSDNNAVVE-----YSDVVVFSV 79 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~--~~l~~~g~~~-~~~~~~~~~-----~aDiIil~v 79 (274)
|+++||||||+|++|..+...+.+... .++...+++++++. +...+.|+.. .++.+++++ +.|+||.++
T Consensus 2 m~klrVAIIGtG~IGt~hm~~l~~~~~---velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT 78 (302)
T PRK08300 2 MSKLKVAIIGSGNIGTDLMIKILRSEH---LEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDAT 78 (302)
T ss_pred CCCCeEEEEcCcHHHHHHHHHHhcCCC---cEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECC
Confidence 567899999999999998888876432 26654448888642 3334478765 356666664 589999999
Q ss_pred CcccHHHHHHHhccccCCCCEEEEec
Q 024016 80 KPQVVKDVAMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 80 ~~~~~~~v~~~i~~~l~~~~~vis~~ 105 (274)
+.....+...... ..|+.+|+.+
T Consensus 79 ~a~~H~e~a~~a~---eaGk~VID~s 101 (302)
T PRK08300 79 SAGAHVRHAAKLR---EAGIRAIDLT 101 (302)
T ss_pred CHHHHHHHHHHHH---HcCCeEEECC
Confidence 9888777766554 4567777654
No 176
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=98.30 E-value=8.3e-06 Score=67.63 Aligned_cols=87 Identities=17% Similarity=0.342 Sum_probs=64.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH--cCceec---cCch----hh-ccCCCEEEEeeC
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES--IGVKVL---SDNN----AV-VEYSDVVVFSVK 80 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~--~g~~~~---~~~~----~~-~~~aDiIil~v~ 80 (274)
|+|.|||+|.+|..+|+.|.+.|| +|.+. +++++++++..+ .+..+. .+.. ++ ++++|+++.++.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~----~Vv~I-d~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~ 75 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGH----NVVLI-DRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATG 75 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCC----ceEEE-EcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeC
Confidence 689999999999999999999999 99999 999999888444 443321 2222 22 568999999999
Q ss_pred cccHHHHHHHhccc-cCCCCEEE
Q 024016 81 PQVVKDVAMQIRPL-LSRKKLLV 102 (274)
Q Consensus 81 ~~~~~~v~~~i~~~-l~~~~~vi 102 (274)
.+....++-.+... +....++.
T Consensus 76 ~d~~N~i~~~la~~~~gv~~via 98 (225)
T COG0569 76 NDEVNSVLALLALKEFGVPRVIA 98 (225)
T ss_pred CCHHHHHHHHHHHHhcCCCcEEE
Confidence 88888777666533 43333444
No 177
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=98.30 E-value=5.5e-06 Score=72.65 Aligned_cols=88 Identities=14% Similarity=0.236 Sum_probs=65.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHh-CCCCCCCcEEEEeCCCHHHHHHHHH-----cCce--eccCchhhccCCCEEEEeeC
Q 024016 9 ESFILGFIGAGKMAESIAKGVAK-SGVLPPDRICTAVHSNLKRRDAFES-----IGVK--VLSDNNAVVEYSDVVVFSVK 80 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~-~g~~~~~~v~v~~~r~~~~~~~l~~-----~g~~--~~~~~~~~~~~aDiIil~v~ 80 (274)
+..+++|||+|.+|...+..|.. .+. .+|++| +|++++++.+.+ .|+. ..++..+++.++|+|+.|||
T Consensus 128 ~~~~v~iiGaG~qA~~~~~al~~~~~i---~~v~V~-~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~ 203 (326)
T TIGR02992 128 DSSVVAIFGAGMQARLQLEALTLVRDI---RSARIW-ARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTP 203 (326)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhCCc---cEEEEE-CCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecC
Confidence 34689999999999999999974 443 479999 999999888765 2543 35677888899999999998
Q ss_pred cccHHHHHHHhccccCCCCEEEEe
Q 024016 81 PQVVKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 81 ~~~~~~v~~~i~~~l~~~~~vis~ 104 (274)
... .++. ...+++|+.+..+
T Consensus 204 s~~--p~i~--~~~l~~g~~i~~v 223 (326)
T TIGR02992 204 SET--PILH--AEWLEPGQHVTAM 223 (326)
T ss_pred CCC--cEec--HHHcCCCcEEEee
Confidence 643 2221 1235788776655
No 178
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=98.28 E-value=6.2e-06 Score=74.18 Aligned_cols=89 Identities=13% Similarity=0.170 Sum_probs=69.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccHHHH
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDV 87 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v 87 (274)
...++|+|+|+|.+|..++..+...|. +|+++ ++++.+.......|..+. +..++++.+|+||.|+.... +
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~lr~~Ga----~ViV~-d~dp~ra~~A~~~G~~v~-~l~eal~~aDVVI~aTG~~~---v 280 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQRLRGLGA----RVIVT-EVDPICALQAAMDGFRVM-TMEEAAELGDIFVTATGNKD---V 280 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC----EEEEE-cCCchhhHHHHhcCCEec-CHHHHHhCCCEEEECCCCHH---H
Confidence 356799999999999999999999998 99999 999988766555677653 56788889999999985432 2
Q ss_pred HH-HhccccCCCCEEEEec
Q 024016 88 AM-QIRPLLSRKKLLVSVA 105 (274)
Q Consensus 88 ~~-~i~~~l~~~~~vis~~ 105 (274)
+. +....+++|.++++..
T Consensus 281 I~~~~~~~mK~GailiNvG 299 (425)
T PRK05476 281 ITAEHMEAMKDGAILANIG 299 (425)
T ss_pred HHHHHHhcCCCCCEEEEcC
Confidence 32 3444567888888653
No 179
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.27 E-value=5.3e-06 Score=72.15 Aligned_cols=67 Identities=19% Similarity=0.289 Sum_probs=49.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHH----HHHc-----CceeccCchhhccCCCEEEEeeC
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA----FESI-----GVKVLSDNNAVVEYSDVVVFSVK 80 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~----l~~~-----g~~~~~~~~~~~~~aDiIil~v~ 80 (274)
|||+|||+|.+|.+++..|...|.. .+|.++ |+++++++. +... ...+..+..+.+++||+||+|.+
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~--~ev~l~-D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~l~~aDiViita~ 76 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLA--SEIVLV-DINKAKAEGEAMDLAHGTPFVKPVRIYAGDYADCKGADVVVITAG 76 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCC--CEEEEE-ECCchhhhhHHHHHHccccccCCeEEeeCCHHHhCCCCEEEEccC
Confidence 5899999999999999999998842 279999 999876653 2211 11222234466899999999985
No 180
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=98.27 E-value=8.3e-06 Score=71.07 Aligned_cols=97 Identities=14% Similarity=0.242 Sum_probs=64.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH----H-----cCceeccCchhhccCCCEEEEee
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE----S-----IGVKVLSDNNAVVEYSDVVVFSV 79 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~----~-----~g~~~~~~~~~~~~~aDiIil~v 79 (274)
..+||+|||+|++|++++..|...|.. .++.++ |+++++++... . ....+..+..+.+++||+||++-
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~--~el~L~-D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIita 81 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIA--DELVII-DINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITA 81 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCC--CEEEEE-eCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEec
Confidence 447999999999999999999988873 379999 99877654332 1 12344445556789999999976
Q ss_pred --C--ccc------------HHHHHHHhccccCCCCEEEEecCCCC
Q 024016 80 --K--PQV------------VKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 80 --~--~~~------------~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
| |.. +++++..+..+ .++..++..+++..
T Consensus 82 g~~~k~g~~R~dll~~N~~i~~~i~~~i~~~-~~~~~vivvsNP~d 126 (315)
T PRK00066 82 GAPQKPGETRLDLVEKNLKIFKSIVGEVMAS-GFDGIFLVASNPVD 126 (315)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccCcHH
Confidence 2 211 33344444443 35666776666544
No 181
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=98.27 E-value=2.1e-06 Score=74.84 Aligned_cols=92 Identities=21% Similarity=0.259 Sum_probs=58.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH---c-C--ceeccCchhhccCCCEEEEeeCcc
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES---I-G--VKVLSDNNAVVEYSDVVVFSVKPQ 82 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~---~-g--~~~~~~~~~~~~~aDiIil~v~~~ 82 (274)
+..+++|||+|..|..-+..+...- +..+|.+| +|++++++++.+ . + +..+++.++++++||+|+.|++..
T Consensus 127 ~~~~l~viGaG~QA~~~~~a~~~~~--~i~~v~v~-~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~ 203 (313)
T PF02423_consen 127 DARTLGVIGAGVQARWHLRALAAVR--PIKEVRVY-SRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPST 203 (313)
T ss_dssp T--EEEEE--SHHHHHHHHHHHHHS----SEEEEE--SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----S
T ss_pred CCceEEEECCCHHHHHHHHHHHHhC--CceEEEEE-ccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCC
Confidence 3468999999999999999887642 34589999 999999988876 2 4 345788899999999999999866
Q ss_pred cHHHHHHHhccccCCCCEEEEec
Q 024016 83 VVKDVAMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 83 ~~~~v~~~i~~~l~~~~~vis~~ 105 (274)
.-..++. ...++||+.|.++.
T Consensus 204 ~~~P~~~--~~~l~~g~hi~~iG 224 (313)
T PF02423_consen 204 TPAPVFD--AEWLKPGTHINAIG 224 (313)
T ss_dssp SEEESB---GGGS-TT-EEEE-S
T ss_pred CCCcccc--HHHcCCCcEEEEec
Confidence 5212222 13467887766653
No 182
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=98.25 E-value=8.5e-06 Score=72.89 Aligned_cols=100 Identities=14% Similarity=0.148 Sum_probs=74.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccHHHH
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDV 87 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v 87 (274)
...++|+|+|+|.+|..+++.+...|. +|+++ ++++.+.......|..+. +..++++++|+||.++.... +
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga----~ViV~-d~dp~r~~~A~~~G~~v~-~leeal~~aDVVItaTG~~~---v 263 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGA----RVIVT-EVDPIRALEAAMDGFRVM-TMEEAAKIGDIFITATGNKD---V 263 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcC----EEEEE-eCChhhHHHHHhcCCEeC-CHHHHHhcCCEEEECCCCHH---H
Confidence 356799999999999999999999898 99999 999987766666787654 45678889999999886432 2
Q ss_pred HH-HhccccCCCCEEEEecCC---CCHHHHHHh
Q 024016 88 AM-QIRPLLSRKKLLVSVAAG---VKLKDLQEW 116 (274)
Q Consensus 88 ~~-~i~~~l~~~~~vis~~~g---~~~~~l~~~ 116 (274)
+. +....+++|.++++...+ +..+.+.+.
T Consensus 264 I~~~~~~~mK~GailiN~G~~~~eId~~aL~~~ 296 (406)
T TIGR00936 264 IRGEHFENMKDGAIVANIGHFDVEIDVKALEEL 296 (406)
T ss_pred HHHHHHhcCCCCcEEEEECCCCceeCHHHHHHH
Confidence 32 244457888888876432 444555443
No 183
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=98.25 E-value=4.2e-06 Score=71.48 Aligned_cols=93 Identities=12% Similarity=0.168 Sum_probs=64.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc----CceeccCchh-hccCCCEEEEeeCccc
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI----GVKVLSDNNA-VVEYSDVVVFSVKPQV 83 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~----g~~~~~~~~~-~~~~aDiIil~v~~~~ 83 (274)
+.+++.|+|+|.+|.+++..|.+.|+ +|+++ +|++++.+.+.+. +.....+..+ ...++|+||.|+|...
T Consensus 116 ~~k~vliiGaGg~g~aia~~L~~~g~----~v~v~-~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm 190 (270)
T TIGR00507 116 PNQRVLIIGAGGAARAVALPLLKADC----NVIIA-NRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGM 190 (270)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCC
Confidence 35689999999999999999999998 99999 9999988777652 3211122222 2357999999998642
Q ss_pred HHHHHH-Hh-ccccCCCCEEEEecC
Q 024016 84 VKDVAM-QI-RPLLSRKKLLVSVAA 106 (274)
Q Consensus 84 ~~~v~~-~i-~~~l~~~~~vis~~~ 106 (274)
..++-. .+ ...++++.++++++-
T Consensus 191 ~~~~~~~~~~~~~l~~~~~v~D~~y 215 (270)
T TIGR00507 191 SGNIDEPPVPAEKLKEGMVVYDMVY 215 (270)
T ss_pred CCCCCCCCCCHHHcCCCCEEEEecc
Confidence 211100 01 123578888888753
No 184
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=98.24 E-value=8.2e-06 Score=69.43 Aligned_cols=99 Identities=23% Similarity=0.276 Sum_probs=65.3
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhC-CCCCCCcEEEEeCCC-HHH----HHHHHH---cCceeccCchhhccCCCEEEEeeC
Q 024016 11 FILGFIG-AGKMAESIAKGVAKS-GVLPPDRICTAVHSN-LKR----RDAFES---IGVKVLSDNNAVVEYSDVVVFSVK 80 (274)
Q Consensus 11 ~~IgiIG-~G~mG~~~a~~L~~~-g~~~~~~v~v~~~r~-~~~----~~~l~~---~g~~~~~~~~~~~~~aDiIil~v~ 80 (274)
+||+|+| +|+||..+++.+.+. ++ ++...++|. ++. ...+.. .|+.++++.+++..++|+||.+++
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~----elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT~ 77 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGL----QLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVETDPDVLIDFTT 77 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCC----EEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcCCCCEEEECCC
Confidence 6999999 699999999999864 44 555433753 222 112211 356666777776557899999999
Q ss_pred cccHHHHHHHhccccCCCCEEEEecCCCCHHHHHHh
Q 024016 81 PQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEW 116 (274)
Q Consensus 81 ~~~~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~ 116 (274)
|+...+.+..... .|.-+|.-+.|.+.+..++.
T Consensus 78 p~~~~~~~~~al~---~g~~vVigttg~~~e~~~~l 110 (266)
T TIGR00036 78 PEGVLNHLKFALE---HGVRLVVGTTGFSEEDKQEL 110 (266)
T ss_pred hHHHHHHHHHHHH---CCCCEEEECCCCCHHHHHHH
Confidence 9988887766543 34445544457776655443
No 185
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=98.22 E-value=8.3e-06 Score=70.91 Aligned_cols=90 Identities=20% Similarity=0.230 Sum_probs=69.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH----c-C--ceeccCchhhccCCCEEEEeeCc
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES----I-G--VKVLSDNNAVVEYSDVVVFSVKP 81 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~----~-g--~~~~~~~~~~~~~aDiIil~v~~ 81 (274)
....++|||+|.++......+.+-- +..+|.+| +|++++++++.. . + +..+.|.++++++||+|+.|||.
T Consensus 129 da~~laiIGaG~qA~~ql~a~~~v~--~~~~I~i~-~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s 205 (330)
T COG2423 129 DASTLAIIGAGAQARTQLEALKAVR--DIREIRVY-SRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPS 205 (330)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhhC--CccEEEEE-cCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCC
Confidence 3468999999999999999887642 45689999 999999988874 2 3 45678889999999999999987
Q ss_pred ccHHHHHHHhccccCCCCEEEEec
Q 024016 82 QVVKDVAMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 82 ~~~~~v~~~i~~~l~~~~~vis~~ 105 (274)
.. .++. ...++||+.|..+.
T Consensus 206 ~~--Pil~--~~~l~~G~hI~aiG 225 (330)
T COG2423 206 TE--PVLK--AEWLKPGTHINAIG 225 (330)
T ss_pred CC--Ceec--HhhcCCCcEEEecC
Confidence 76 3332 13467887655543
No 186
>PLN02494 adenosylhomocysteinase
Probab=98.22 E-value=7e-06 Score=74.21 Aligned_cols=101 Identities=13% Similarity=0.178 Sum_probs=73.4
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccHHHH
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDV 87 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v 87 (274)
...++|+|+|+|.+|..+++.+...|. +|+++ ++++.+.......|..+. +..++++.+|+||.++....+-
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~Ga----~VIV~-e~dp~r~~eA~~~G~~vv-~leEal~~ADVVI~tTGt~~vI-- 323 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAAGA----RVIVT-EIDPICALQALMEGYQVL-TLEDVVSEADIFVTTTGNKDII-- 323 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-eCCchhhHHHHhcCCeec-cHHHHHhhCCEEEECCCCccch--
Confidence 345799999999999999999998888 89999 999877655555677654 5677888999999987644321
Q ss_pred HHHhccccCCCCEEEEecC---CCCHHHHHHh
Q 024016 88 AMQIRPLLSRKKLLVSVAA---GVKLKDLQEW 116 (274)
Q Consensus 88 ~~~i~~~l~~~~~vis~~~---g~~~~~l~~~ 116 (274)
..+....++++.+++++.- -+....|.+.
T Consensus 324 ~~e~L~~MK~GAiLiNvGr~~~eID~~aL~~~ 355 (477)
T PLN02494 324 MVDHMRKMKNNAIVCNIGHFDNEIDMLGLETY 355 (477)
T ss_pred HHHHHhcCCCCCEEEEcCCCCCccCHHHHhhc
Confidence 1223334678889997754 2334555544
No 187
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=98.22 E-value=4.1e-06 Score=75.52 Aligned_cols=69 Identities=20% Similarity=0.301 Sum_probs=56.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cC-cee--ccCchhhccCCCEEEEeeCc
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IG-VKV--LSDNNAVVEYSDVVVFSVKP 81 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g-~~~--~~~~~~~~~~aDiIil~v~~ 81 (274)
..+||.|||+|.||..++.+|.+.|. .+|+++ +|+.++++.+.+ .+ ... .++..+.+.++|+||.||+.
T Consensus 180 ~~kkvlviGaG~~a~~va~~L~~~g~---~~I~V~-nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a 252 (414)
T PRK13940 180 SSKNVLIIGAGQTGELLFRHVTALAP---KQIMLA-NRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNV 252 (414)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHHcCC---CEEEEE-CCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCC
Confidence 45799999999999999999999985 379999 999999988887 44 332 24446678899999999964
No 188
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=98.20 E-value=1.2e-05 Score=72.27 Aligned_cols=89 Identities=11% Similarity=0.144 Sum_probs=69.9
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccHHHH
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDV 87 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v 87 (274)
....+|+|+|+|.+|..+++.+...|. +|+++ ++++.+.+.....|+... +..+.+..+|+||.|+.... +
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga----~ViV~-d~d~~R~~~A~~~G~~~~-~~~e~v~~aDVVI~atG~~~---~ 270 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGA----RVIVT-EVDPICALQAAMEGYEVM-TMEEAVKEGDIFVTTTGNKD---I 270 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-ECChhhHHHHHhcCCEEc-cHHHHHcCCCEEEECCCCHH---H
Confidence 345799999999999999999999998 89999 999999888777888654 34677889999999985432 2
Q ss_pred HH-HhccccCCCCEEEEec
Q 024016 88 AM-QIRPLLSRKKLLVSVA 105 (274)
Q Consensus 88 ~~-~i~~~l~~~~~vis~~ 105 (274)
+. .....+++|.+++.+.
T Consensus 271 i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 271 ITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred HHHHHHhcCCCCcEEEEeC
Confidence 22 2344567888888664
No 189
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=98.20 E-value=1.3e-05 Score=70.54 Aligned_cols=89 Identities=15% Similarity=0.117 Sum_probs=61.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-c------------------CceeccCchhhcc
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-I------------------GVKVLSDNNAVVE 70 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~------------------g~~~~~~~~~~~~ 70 (274)
++||||+|+|+||..+++.+.+... -++...++++++....+.+ . ++.+..+..++..
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~~d---~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~ 77 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQPD---MELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLE 77 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcCCC---cEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhc
Confidence 3699999999999999998876432 2666554777765554433 2 2344456667777
Q ss_pred CCCEEEEeeCcccHHHHHHHhccccCCCCEEEEe
Q 024016 71 YSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 71 ~aDiIil~v~~~~~~~v~~~i~~~l~~~~~vis~ 104 (274)
++|+||.|+++....+...... +.|+.+|+.
T Consensus 78 ~vDVVIdaT~~~~~~e~a~~~~---~aGk~VI~~ 108 (341)
T PRK04207 78 KADIVVDATPGGVGAKNKELYE---KAGVKAIFQ 108 (341)
T ss_pred cCCEEEECCCchhhHHHHHHHH---HCCCEEEEc
Confidence 8999999999988777765443 345566654
No 190
>PTZ00117 malate dehydrogenase; Provisional
Probab=98.19 E-value=7.8e-06 Score=71.41 Aligned_cols=95 Identities=16% Similarity=0.323 Sum_probs=65.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHH--H--HH----cC--cee--ccCchhhccCCCEEE
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA--F--ES----IG--VKV--LSDNNAVVEYSDVVV 76 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~--l--~~----~g--~~~--~~~~~~~~~~aDiIi 76 (274)
+.+||+|||+|.||..++..+...|. .++.++ |+++++++. + .. .+ ..+ .++. +.+++||+||
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~---~~l~L~-Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~-~~l~~ADiVV 78 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNL---GDVVLY-DVIKGVPQGKALDLKHFSTLVGSNINILGTNNY-EDIKDSDVVV 78 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCC---CeEEEE-ECCCccchhHHHHHhhhccccCCCeEEEeCCCH-HHhCCCCEEE
Confidence 45799999999999999999988884 279999 998765431 1 11 12 222 2343 4789999999
Q ss_pred Eee--C--c------------ccHHHHHHHhccccCCCCEEEEecCCCC
Q 024016 77 FSV--K--P------------QVVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 77 l~v--~--~------------~~~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
++. + + ..++++.+.+..+ .|+.+++..+++..
T Consensus 79 itag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~-~p~a~vivvsNP~d 126 (319)
T PTZ00117 79 ITAGVQRKEEMTREDLLTINGKIMKSVAESVKKY-CPNAFVICVTNPLD 126 (319)
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecChHH
Confidence 998 3 2 2355666666665 46666776777654
No 191
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=98.17 E-value=9e-06 Score=71.63 Aligned_cols=90 Identities=20% Similarity=0.320 Sum_probs=64.9
Q ss_pred CCCCeEEEEcccHHH-HHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCce-eccCchhhccC--CCEEEEeeCcc
Q 024016 8 AESFILGFIGAGKMA-ESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVK-VLSDNNAVVEY--SDVVVFSVKPQ 82 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG-~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~-~~~~~~~~~~~--aDiIil~v~~~ 82 (274)
|+++||||||+|.++ ...+..+.+.+.. ..-+.++ +|++++++.+.+ .|+. .++|..+++++ .|+|++|+|++
T Consensus 1 ~~~irvgiiG~G~~~~~~~~~~~~~~~~~-~~~vav~-d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~ 78 (342)
T COG0673 1 MKMIRVGIIGAGGIAGKAHLPALAALGGG-LELVAVV-DRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNA 78 (342)
T ss_pred CCeeEEEEEcccHHHHHHhHHHHHhCCCc-eEEEEEe-cCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCCh
Confidence 457899999999665 5578788776520 0135666 999999988887 7774 77888888774 69999999988
Q ss_pred cHHHHHHHhccccCCCCEEE
Q 024016 83 VVKDVAMQIRPLLSRKKLLV 102 (274)
Q Consensus 83 ~~~~v~~~i~~~l~~~~~vi 102 (274)
...++.... +..|+-|+
T Consensus 79 ~H~e~~~~A---L~aGkhVl 95 (342)
T COG0673 79 LHAELALAA---LEAGKHVL 95 (342)
T ss_pred hhHHHHHHH---HhcCCEEE
Confidence 766665332 34555555
No 192
>PRK08291 ectoine utilization protein EutC; Validated
Probab=98.17 E-value=1.1e-05 Score=70.98 Aligned_cols=88 Identities=15% Similarity=0.234 Sum_probs=64.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHh-CCCCCCCcEEEEeCCCHHHHHHHHH-----cCce--eccCchhhccCCCEEEEeeC
Q 024016 9 ESFILGFIGAGKMAESIAKGVAK-SGVLPPDRICTAVHSNLKRRDAFES-----IGVK--VLSDNNAVVEYSDVVVFSVK 80 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~-~g~~~~~~v~v~~~r~~~~~~~l~~-----~g~~--~~~~~~~~~~~aDiIil~v~ 80 (274)
+.++|+|||+|.+|.+.+..+.. .+. .+|.+| +|++++++.+.+ .|+. ..++..+++.++|+|+.|+|
T Consensus 131 ~~~~v~IiGaG~~a~~~~~al~~~~~~---~~V~v~-~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~ 206 (330)
T PRK08291 131 DASRAAVIGAGEQARLQLEALTLVRPI---REVRVW-ARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTP 206 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCC---CEEEEE-cCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeC
Confidence 34689999999999999988875 332 389999 999999988876 2444 35677888899999999998
Q ss_pred cccHHHHHHHhccccCCCCEEEEe
Q 024016 81 PQVVKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 81 ~~~~~~v~~~i~~~l~~~~~vis~ 104 (274)
... .++.. ..+++++.+..+
T Consensus 207 s~~--p~i~~--~~l~~g~~v~~v 226 (330)
T PRK08291 207 SEE--PILKA--EWLHPGLHVTAM 226 (330)
T ss_pred CCC--cEecH--HHcCCCceEEee
Confidence 653 22221 124677665543
No 193
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=98.15 E-value=7.9e-06 Score=72.36 Aligned_cols=89 Identities=17% Similarity=0.195 Sum_probs=66.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCC-CCCCCcEEEEeCCCHHHHHHHHHcC---cee-------ccCchhhccCCCEEEEe
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSG-VLPPDRICTAVHSNLKRRDAFESIG---VKV-------LSDNNAVVEYSDVVVFS 78 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g-~~~~~~v~v~~~r~~~~~~~l~~~g---~~~-------~~~~~~~~~~aDiIil~ 78 (274)
+++|-|||+|.+|+..|..|.++| + +|++- +|++++++++.... ++. .....+++++.|+||-|
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~----~V~iA-dRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~ 75 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDG----EVTIA-DRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINA 75 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCc----eEEEE-eCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEe
Confidence 468999999999999999999998 5 99999 99999998887642 321 11234678888999999
Q ss_pred eCcccHHHHHHHhccccCCCCEEEEecC
Q 024016 79 VKPQVVKDVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 79 v~~~~~~~v~~~i~~~l~~~~~vis~~~ 106 (274)
.|+..-..+++.. ++.|.-+++++.
T Consensus 76 ~p~~~~~~i~ka~---i~~gv~yvDts~ 100 (389)
T COG1748 76 APPFVDLTILKAC---IKTGVDYVDTSY 100 (389)
T ss_pred CCchhhHHHHHHH---HHhCCCEEEccc
Confidence 9988766666432 234445665543
No 194
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=98.14 E-value=1.7e-05 Score=67.50 Aligned_cols=95 Identities=20% Similarity=0.303 Sum_probs=65.0
Q ss_pred EEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-------c--C--ceeccCchhhccCCCEEEEeeC
Q 024016 13 LGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-------I--G--VKVLSDNNAVVEYSDVVVFSVK 80 (274)
Q Consensus 13 IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-------~--g--~~~~~~~~~~~~~aDiIil~v~ 80 (274)
|+|||+ |.||..++..|...|.....+|.++ |+++++++.... . . ++..+|..+.+++||+||++.-
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~-D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~ 79 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLY-DIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAG 79 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEE-eCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCC
Confidence 689999 9999999999998882112389999 998866543221 1 2 2334555788999999999652
Q ss_pred c----------------ccHHHHHHHhccccCCCCEEEEecCCCC
Q 024016 81 P----------------QVVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 81 ~----------------~~~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
. +.++++.+++..+- |+..++..+++..
T Consensus 80 ~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~~i~~tNP~d 123 (263)
T cd00650 80 VGRKPGMGRLDLLKRNVPIVKEIGDNIEKYS-PDAWIIVVSNPVD 123 (263)
T ss_pred CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHH
Confidence 1 13555666666654 6777777777654
No 195
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=98.12 E-value=3.6e-06 Score=76.36 Aligned_cols=68 Identities=21% Similarity=0.337 Sum_probs=50.9
Q ss_pred CeEEEEcccHHHHHHHH--HHH----hCCCCCCCcEEEEeCCCHHHHHHHHH--------cC----ceeccCchhhccCC
Q 024016 11 FILGFIGAGKMAESIAK--GVA----KSGVLPPDRICTAVHSNLKRRDAFES--------IG----VKVLSDNNAVVEYS 72 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~--~L~----~~g~~~~~~v~v~~~r~~~~~~~l~~--------~g----~~~~~~~~~~~~~a 72 (274)
+||+|||+|.||.+++. .++ .+|+ +|.+| |+++++++.... .+ +..++|..+++++|
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~----eV~L~-Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~A 75 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGS----TIALM-DIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGA 75 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCC----EEEEE-CCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCC
Confidence 58999999999998665 454 2344 89999 999988765432 11 33456767889999
Q ss_pred CEEEEeeCccc
Q 024016 73 DVVVFSVKPQV 83 (274)
Q Consensus 73 DiIil~v~~~~ 83 (274)
|+||.+++...
T Consensus 76 D~Vi~ai~~~~ 86 (423)
T cd05297 76 DFVINTIQVGG 86 (423)
T ss_pred CEEEEeeEecC
Confidence 99999998543
No 196
>PRK04148 hypothetical protein; Provisional
Probab=98.12 E-value=1.7e-05 Score=59.70 Aligned_cols=93 Identities=12% Similarity=0.209 Sum_probs=72.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCcee-----ccCchhhccCCCEEEEeeCccc
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-----LSDNNAVVEYSDVVVFSVKPQV 83 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~-----~~~~~~~~~~aDiIil~v~~~~ 83 (274)
+.+||..||+| -|..++..|.+.|+ +|++. |.+++..+.+++.++.+ .+...+.-+++|+|..+=||..
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~----~ViaI-Di~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirpp~e 89 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGF----DVIVI-DINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRPPRD 89 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCCCHH
Confidence 34789999999 99999999999999 99999 99999988888766543 2334566789999999998888
Q ss_pred HHHHHHHhccccCCCCEEEEecCC
Q 024016 84 VKDVAMQIRPLLSRKKLLVSVAAG 107 (274)
Q Consensus 84 ~~~v~~~i~~~l~~~~~vis~~~g 107 (274)
+..-+-++...+..+-++..+++-
T Consensus 90 l~~~~~~la~~~~~~~~i~~l~~e 113 (134)
T PRK04148 90 LQPFILELAKKINVPLIIKPLSGE 113 (134)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCC
Confidence 777776777666665444444443
No 197
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=98.12 E-value=9.6e-06 Score=69.54 Aligned_cols=94 Identities=13% Similarity=0.215 Sum_probs=64.3
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cC----ceeccCchhhccCCCEEEEeeCcc
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IG----VKVLSDNNAVVEYSDVVVFSVKPQ 82 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g----~~~~~~~~~~~~~aDiIil~v~~~ 82 (274)
...+++.|+|+|.+|.+++..|.+.|. .+|+++ +|+.++++.+.+ .+ +.+..+..+.+.++|+||-|+|..
T Consensus 121 ~~~k~vlVlGaGg~a~ai~~aL~~~g~---~~V~v~-~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g 196 (278)
T PRK00258 121 LKGKRILILGAGGAARAVILPLLDLGV---AEITIV-NRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAG 196 (278)
T ss_pred CCCCEEEEEcCcHHHHHHHHHHHHcCC---CEEEEE-eCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCC
Confidence 455789999999999999999999993 289999 999999888876 22 222112235567899999999855
Q ss_pred cHHHH-HHHh-ccccCCCCEEEEec
Q 024016 83 VVKDV-AMQI-RPLLSRKKLLVSVA 105 (274)
Q Consensus 83 ~~~~v-~~~i-~~~l~~~~~vis~~ 105 (274)
...+. ...+ ...++++.+++++.
T Consensus 197 ~~~~~~~~~~~~~~l~~~~~v~Div 221 (278)
T PRK00258 197 MSGELPLPPLPLSLLRPGTIVYDMI 221 (278)
T ss_pred CCCCCCCCCCCHHHcCCCCEEEEee
Confidence 32110 0000 12345667777764
No 198
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=98.11 E-value=1.6e-05 Score=69.42 Aligned_cols=95 Identities=18% Similarity=0.276 Sum_probs=63.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHH--HH---HH---cC--ceec--cCchhhccCCCEEE
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD--AF---ES---IG--VKVL--SDNNAVVEYSDVVV 76 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~--~l---~~---~g--~~~~--~~~~~~~~~aDiIi 76 (274)
+.+||+|||+|+||+.++..+...|+ .+|.++ |+++++++ .+ .. .+ .++. ++. +.+++||+||
T Consensus 5 ~~~KI~IIGaG~vG~~ia~~la~~gl---~~i~Lv-Di~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI 79 (321)
T PTZ00082 5 KRRKISLIGSGNIGGVMAYLIVLKNL---GDVVLF-DIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVI 79 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC---CeEEEE-eCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEE
Confidence 44799999999999999999988885 268999 99887532 11 11 12 2332 343 6789999999
Q ss_pred EeeC----ccc-----------------HHHHHHHhccccCCCCEEEEecCCCC
Q 024016 77 FSVK----PQV-----------------VKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 77 l~v~----~~~-----------------~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
++.- +.. +.++.+++..+. |+..++..+++..
T Consensus 80 ~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~-p~a~~iv~sNP~d 132 (321)
T PTZ00082 80 VTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYC-PNAFVIVITNPLD 132 (321)
T ss_pred ECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHH
Confidence 9761 111 445555566554 5556666667654
No 199
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=98.10 E-value=1.2e-05 Score=65.15 Aligned_cols=91 Identities=19% Similarity=0.198 Sum_probs=62.7
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-c----Cce--ec--cC---chhhccCCCE
Q 024016 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-I----GVK--VL--SD---NNAVVEYSDV 74 (274)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~----g~~--~~--~~---~~~~~~~aDi 74 (274)
.+.+++.|+|. |.+|..+++.|.+.|+ +|+++ +|+.++.+.+.+ . +.. .. .+ ..+.++++|+
T Consensus 26 l~~~~vlVlGgtG~iG~~~a~~l~~~g~----~V~l~-~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~di 100 (194)
T cd01078 26 LKGKTAVVLGGTGPVGQRAAVLLAREGA----RVVLV-GRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADV 100 (194)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC----EEEEE-cCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCE
Confidence 34579999995 9999999999999998 99999 999988877654 1 221 11 12 1356778999
Q ss_pred EEEeeCcccHHHHHHHhccccCCCCEEEEec
Q 024016 75 VVFSVKPQVVKDVAMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 75 Iil~v~~~~~~~v~~~i~~~l~~~~~vis~~ 105 (274)
||.+++..... ........+++.+++++.
T Consensus 101 Vi~at~~g~~~--~~~~~~~~~~~~vv~D~~ 129 (194)
T cd01078 101 VFAAGAAGVEL--LEKLAWAPKPLAVAADVN 129 (194)
T ss_pred EEECCCCCcee--chhhhcccCceeEEEEcc
Confidence 99999865531 111112234566777764
No 200
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.07 E-value=3e-05 Score=67.47 Aligned_cols=95 Identities=16% Similarity=0.218 Sum_probs=63.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH----H-c---C---ceeccCchhhccCCCEEEEe
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE----S-I---G---VKVLSDNNAVVEYSDVVVFS 78 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~----~-~---g---~~~~~~~~~~~~~aDiIil~ 78 (274)
.+||+|||+|++|++++..|...|. ..++.++ |+++++++-.. . . . +....+.+ .+++||+||++
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~--~~el~Li-D~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~-~~~~adivvit 78 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGL--ADELVLV-DVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYS-VTANSKVVIVT 78 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCC--CCEEEEE-eCCccHHHHHHHHHHHhhccCCCCEEEECCCHH-HhCCCCEEEEC
Confidence 4699999999999999999998886 3479999 98876543222 1 1 1 22224444 58999999997
Q ss_pred e--C--ccc------------HHHHHHHhccccCCCCEEEEecCCCC
Q 024016 79 V--K--PQV------------VKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 79 v--~--~~~------------~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
. | |.. ++++.+.+..+ .|+.+++..+++..
T Consensus 79 aG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvsNP~d 124 (312)
T cd05293 79 AGARQNEGESRLDLVQRNVDIFKGIIPKLVKY-SPNAILLVVSNPVD 124 (312)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEccChHH
Confidence 6 2 221 33344445555 56677777777654
No 201
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=98.05 E-value=2.9e-05 Score=71.17 Aligned_cols=75 Identities=15% Similarity=0.281 Sum_probs=58.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceec-cC------chhh-ccCCCEEEEeeCc
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVL-SD------NNAV-VEYSDVVVFSVKP 81 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~-~~------~~~~-~~~aDiIil~v~~ 81 (274)
|+|.|+|+|.+|..+++.|.+.|+ +|+++ ++++++.+.+.+ .++.+. .+ ..++ +.++|.||++++.
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~----~v~vi-d~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~ 75 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENN----DVTVI-DTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDS 75 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC----cEEEE-ECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCC
Confidence 589999999999999999999998 99999 999999888876 555432 11 1222 6789999999988
Q ss_pred ccHHHHHHH
Q 024016 82 QVVKDVAMQ 90 (274)
Q Consensus 82 ~~~~~v~~~ 90 (274)
+.....+..
T Consensus 76 ~~~n~~~~~ 84 (453)
T PRK09496 76 DETNMVACQ 84 (453)
T ss_pred hHHHHHHHH
Confidence 766554433
No 202
>PRK06199 ornithine cyclodeaminase; Validated
Probab=98.05 E-value=2.1e-05 Score=70.16 Aligned_cols=91 Identities=22% Similarity=0.288 Sum_probs=66.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-----c-C---ceeccCchhhccCCCEEEEee
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----I-G---VKVLSDNNAVVEYSDVVVFSV 79 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-----~-g---~~~~~~~~~~~~~aDiIil~v 79 (274)
+..+++|||+|.++...+..+...-- +..+|.+| +|++++++.+.+ . | +.++++.++++++||||+.||
T Consensus 154 da~~l~iiG~G~QA~~~l~a~~~v~~-~i~~V~v~-~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT 231 (379)
T PRK06199 154 DSKVVGLLGPGVMGKTILAAFMAVCP-GIDTIKIK-GRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCN 231 (379)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcC-CccEEEEE-CCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEcc
Confidence 45789999999999999998876321 13589999 999999887765 1 2 456788999999999999999
Q ss_pred Cccc----HHHHHHHhccccCCCCEEEE
Q 024016 80 KPQV----VKDVAMQIRPLLSRKKLLVS 103 (274)
Q Consensus 80 ~~~~----~~~v~~~i~~~l~~~~~vis 103 (274)
+... ...++. ...++||+.|+.
T Consensus 232 ~s~~~~~s~~Pv~~--~~~lkpG~hv~~ 257 (379)
T PRK06199 232 SGETGDPSTYPYVK--REWVKPGAFLLM 257 (379)
T ss_pred CCCCCCCCcCcEec--HHHcCCCcEEec
Confidence 6422 223332 124578876654
No 203
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=98.04 E-value=2.2e-05 Score=70.04 Aligned_cols=91 Identities=16% Similarity=0.221 Sum_probs=64.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceec------cCchhhccCCCEEEEeeCc-
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVL------SDNNAVVEYSDVVVFSVKP- 81 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~------~~~~~~~~~aDiIil~v~~- 81 (274)
..+|.|||+|.+|...++.+...|. +|+++ ||++++.+.+.. .+..+. .+..+.+.++|+||.|++.
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa----~V~v~-d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~ 241 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGA----TVTIL-DINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIP 241 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCC----eEEEE-ECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccC
Confidence 4579999999999999999999998 89999 999998887765 343221 1234567899999999731
Q ss_pred -ccHHHHH-HHhccccCCCCEEEEec
Q 024016 82 -QVVKDVA-MQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 82 -~~~~~v~-~~i~~~l~~~~~vis~~ 105 (274)
.....++ .+....++++.+||++.
T Consensus 242 g~~~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 242 GAKAPKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred CCCCCcCcCHHHHhcCCCCCEEEEEe
Confidence 1111111 23334467888888765
No 204
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=98.02 E-value=9.1e-05 Score=65.43 Aligned_cols=94 Identities=17% Similarity=0.254 Sum_probs=62.0
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cC-ce-----eccCchh-hccCCCEEEEeeC
Q 024016 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IG-VK-----VLSDNNA-VVEYSDVVVFSVK 80 (274)
Q Consensus 10 ~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g-~~-----~~~~~~~-~~~~aDiIil~v~ 80 (274)
++||+|||+ |.+|..+++.|.+... .++....+|. +..+.+.+ .+ .. ...+..+ ...++|+||+|+|
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~---~elv~v~~~~-~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP 77 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPE---VEIVAVTSRS-SAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALP 77 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCC---ceEEEEECcc-ccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCC
Confidence 479999997 9999999999987632 2665442543 22222221 11 11 1222222 3467999999999
Q ss_pred cccHHHHHHHhccccCCCCEEEEecCCCCH
Q 024016 81 PQVVKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (274)
Q Consensus 81 ~~~~~~v~~~i~~~l~~~~~vis~~~g~~~ 110 (274)
.+...++...+. ..|+.||+.++....
T Consensus 78 ~~~~~~~v~~a~---~aG~~VID~S~~fR~ 104 (343)
T PRK00436 78 HGVSMDLAPQLL---EAGVKVIDLSADFRL 104 (343)
T ss_pred cHHHHHHHHHHH---hCCCEEEECCcccCC
Confidence 998888887764 367899999887655
No 205
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=98.00 E-value=4.4e-05 Score=65.27 Aligned_cols=88 Identities=14% Similarity=0.205 Sum_probs=60.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHH--HHHHHcCcee-ccCchhhcc--CCCEEEEeeCcccHH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRR--DAFESIGVKV-LSDNNAVVE--YSDVVVFSVKPQVVK 85 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~--~~l~~~g~~~-~~~~~~~~~--~aDiIil~v~~~~~~ 85 (274)
+||||||+|+||..++..+.+... .++...+++++++. +...+.|+.. .++.+++++ +.|+||+|+|+....
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~---~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H~ 78 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEH---LEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAHA 78 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCC---cEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHHH
Confidence 689999999999988888876432 15554338888653 3333478754 345666664 579999999998877
Q ss_pred HHHHHhccccCCCCEEEEe
Q 024016 86 DVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 86 ~v~~~i~~~l~~~~~vis~ 104 (274)
+...... ..|+.+++.
T Consensus 79 e~a~~al---~aGk~VIde 94 (285)
T TIGR03215 79 RHARLLA---ELGKIVIDL 94 (285)
T ss_pred HHHHHHH---HcCCEEEEC
Confidence 7665543 356666643
No 206
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.98 E-value=5.1e-05 Score=65.87 Aligned_cols=94 Identities=15% Similarity=0.285 Sum_probs=63.1
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHH----HHH----c---CceeccCchhhccCCCEEEEee-
Q 024016 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA----FES----I---GVKVLSDNNAVVEYSDVVVFSV- 79 (274)
Q Consensus 12 ~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~----l~~----~---g~~~~~~~~~~~~~aDiIil~v- 79 (274)
||+|||+|++|+++|..|+..+.. .++.++ |.++++++. |.. . .+++..+..+.+++||+|+++.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~--~elvL~-Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG 77 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLF--SEIVLI-DVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAG 77 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCC--CEEEEE-eCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCC
Confidence 799999999999999999988863 379999 988765432 222 1 2334444567789999999986
Q ss_pred -C--cccH---H-----------HHHHHhccccCCCCEEEEecCCCC
Q 024016 80 -K--PQVV---K-----------DVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 80 -~--~~~~---~-----------~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
| |..- . ++.+.+..+ .|+.+++-.+++..
T Consensus 78 ~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~-~p~~i~ivvsNPvD 123 (307)
T cd05290 78 PSIDPGNTDDRLDLAQTNAKIIREIMGNITKV-TKEAVIILITNPLD 123 (307)
T ss_pred CCCCCCCCchHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEecCcHH
Confidence 2 3222 2 222334444 36667777777755
No 207
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=97.96 E-value=0.00012 Score=53.85 Aligned_cols=89 Identities=19% Similarity=0.306 Sum_probs=60.7
Q ss_pred EEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceec-cCc--h-----hhccCCCEEEEeeCcccH
Q 024016 13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-SDN--N-----AVVEYSDVVVFSVKPQVV 84 (274)
Q Consensus 13 IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~-~~~--~-----~~~~~aDiIil~v~~~~~ 84 (274)
|-|+|+|.+|..+++.|.+.+. +|++. ++++++.+.+.+.|..+. .|. . .-++++|.++++++.+..
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~----~vvvi-d~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~ 75 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGI----DVVVI-DRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEE 75 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTS----EEEEE-ESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCC----EEEEE-ECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHHH
Confidence 5689999999999999999776 89999 999999999998776542 221 1 125689999999987654
Q ss_pred HHHHHHhccccCCCCEEEEecC
Q 024016 85 KDVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~~~ 106 (274)
.-.+......+.+...++....
T Consensus 76 n~~~~~~~r~~~~~~~ii~~~~ 97 (116)
T PF02254_consen 76 NLLIALLARELNPDIRIIARVN 97 (116)
T ss_dssp HHHHHHHHHHHTTTSEEEEEES
T ss_pred HHHHHHHHHHHCCCCeEEEEEC
Confidence 4333222222335444554433
No 208
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=97.96 E-value=5.4e-05 Score=52.82 Aligned_cols=64 Identities=19% Similarity=0.326 Sum_probs=47.6
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCccc-HHH
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQV-VKD 86 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~-~~~ 86 (274)
...++++|+|+|.+|..++..|.+.+. .+|++| +| |++|.|++... +.+
T Consensus 21 ~~~~~v~i~G~G~~g~~~a~~l~~~~~---~~v~v~-~r--------------------------di~i~~~~~~~~~~~ 70 (86)
T cd05191 21 LKGKTVVVLGAGEVGKGIAKLLADEGG---KKVVLC-DR--------------------------DILVTATPAGVPVLE 70 (86)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC---CEEEEE-cC--------------------------CEEEEcCCCCCCchH
Confidence 345799999999999999999999843 289999 88 99999997543 322
Q ss_pred HHHHhccccCCCCEEEEe
Q 024016 87 VAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 87 v~~~i~~~l~~~~~vis~ 104 (274)
- ....++++.+|+++
T Consensus 71 ~---~~~~~~~~~~v~~~ 85 (86)
T cd05191 71 E---ATAKINEGAVVIDL 85 (86)
T ss_pred H---HHHhcCCCCEEEec
Confidence 1 11234577787764
No 209
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.96 E-value=3.4e-05 Score=66.32 Aligned_cols=70 Identities=20% Similarity=0.231 Sum_probs=54.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-c----C-cee--ccCchhhccCCCEEEEeeC
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-I----G-VKV--LSDNNAVVEYSDVVVFSVK 80 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~----g-~~~--~~~~~~~~~~aDiIil~v~ 80 (274)
+.++|.|||+|.+|++++..|.+.|. .+|+++ ||+.++++.+.+ . . ..+ ..+..+.+.++|+||-|+|
T Consensus 126 ~~k~vlIlGaGGaaraia~aL~~~G~---~~I~I~-nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp 201 (284)
T PRK12549 126 SLERVVQLGAGGAGAAVAHALLTLGV---ERLTIF-DVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATP 201 (284)
T ss_pred cCCEEEEECCcHHHHHHHHHHHHcCC---CEEEEE-CCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCc
Confidence 44689999999999999999999986 379999 999999988875 1 1 222 1233345678999999987
Q ss_pred cc
Q 024016 81 PQ 82 (274)
Q Consensus 81 ~~ 82 (274)
..
T Consensus 202 ~G 203 (284)
T PRK12549 202 TG 203 (284)
T ss_pred CC
Confidence 54
No 210
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=97.95 E-value=0.00013 Score=64.51 Aligned_cols=101 Identities=17% Similarity=0.287 Sum_probs=66.2
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEE-EEeCCCHHHHHHHHH-c----C---ceec-cCchhhccCCCEEEEee
Q 024016 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRIC-TAVHSNLKRRDAFES-I----G---VKVL-SDNNAVVEYSDVVVFSV 79 (274)
Q Consensus 11 ~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~-v~~~r~~~~~~~l~~-~----g---~~~~-~~~~~~~~~aDiIil~v 79 (274)
+||+|||+ |.+|..+++.|.+.-. .++. ++ +++++.-+.+.+ . + ..+. .+..+..+++|+||+|+
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~---~el~~l~-~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~al 76 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPE---VEITYLV-SSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLAL 76 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCC---ceEEEEe-ccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECC
Confidence 58999998 9999999999986522 2666 55 444322222221 1 1 1121 13345556899999999
Q ss_pred CcccHHHHHHHhccccCCCCEEEEecCCCCH---HHHHHhhC
Q 024016 80 KPQVVKDVAMQIRPLLSRKKLLVSVAAGVKL---KDLQEWTG 118 (274)
Q Consensus 80 ~~~~~~~v~~~i~~~l~~~~~vis~~~g~~~---~~l~~~~~ 118 (274)
|.....++...+. ..|+.||+.++.... +..++|++
T Consensus 77 P~~~s~~~~~~~~---~~G~~VIDlS~~fR~~~~~~y~~~y~ 115 (346)
T TIGR01850 77 PHGVSAELAPELL---AAGVKVIDLSADFRLKDPEVYEKWYG 115 (346)
T ss_pred CchHHHHHHHHHH---hCCCEEEeCChhhhcCChhhhHHhcC
Confidence 9998888887764 357889998776543 34555554
No 211
>PRK11579 putative oxidoreductase; Provisional
Probab=97.95 E-value=0.00012 Score=64.72 Aligned_cols=84 Identities=19% Similarity=0.258 Sum_probs=57.9
Q ss_pred CCeEEEEcccHHHHH-HHHHHHhC-CCCCCCcEEEEeCCCHHHHHHHHHc-CceeccCchhhcc--CCCEEEEeeCcccH
Q 024016 10 SFILGFIGAGKMAES-IAKGVAKS-GVLPPDRICTAVHSNLKRRDAFESI-GVKVLSDNNAVVE--YSDVVVFSVKPQVV 84 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~-~a~~L~~~-g~~~~~~v~v~~~r~~~~~~~l~~~-g~~~~~~~~~~~~--~aDiIil~v~~~~~ 84 (274)
++||||||+|.||.. .+..+.+. +. ++...++++++++. .+. +...++|..++++ +.|+|++|+|+...
T Consensus 4 ~irvgiiG~G~i~~~~~~~~~~~~~~~----~l~av~d~~~~~~~--~~~~~~~~~~~~~ell~~~~vD~V~I~tp~~~H 77 (346)
T PRK11579 4 KIRVGLIGYGYASKTFHAPLIAGTPGL----ELAAVSSSDATKVK--ADWPTVTVVSEPQHLFNDPNIDLIVIPTPNDTH 77 (346)
T ss_pred cceEEEECCCHHHHHHHHHHHhhCCCC----EEEEEECCCHHHHH--hhCCCCceeCCHHHHhcCCCCCEEEEcCCcHHH
Confidence 479999999999984 45656543 34 66543399987654 233 5567788888885 57999999998876
Q ss_pred HHHHHHhccccCCCCEEE
Q 024016 85 KDVAMQIRPLLSRKKLLV 102 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vi 102 (274)
.++..... ..|+-|+
T Consensus 78 ~~~~~~al---~aGkhVl 92 (346)
T PRK11579 78 FPLAKAAL---EAGKHVV 92 (346)
T ss_pred HHHHHHHH---HCCCeEE
Confidence 66654433 3445455
No 212
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=97.93 E-value=3e-05 Score=69.53 Aligned_cols=101 Identities=20% Similarity=0.244 Sum_probs=69.9
Q ss_pred CeEEEEcccHHHHHH-HHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCce---ec-c----------------Cchh--
Q 024016 11 FILGFIGAGKMAESI-AKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK---VL-S----------------DNNA-- 67 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~-a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~---~~-~----------------~~~~-- 67 (274)
|||.++|+|+||++. ...|.++|+ +|++. +++++..+.+.+.|.- +. . +..+
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g~----~V~~v-d~~~~~v~aL~~qglY~v~~~~~~~~~~~i~~v~~~~~~~~~~~~ 75 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNGF----EVTFV-DVNQELIDALNKRKSYQVIVVGENEQVETVSNVSAINSADEEAVI 75 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCCC----eEEEE-ECCHHHHHHHhcCCCeEEEEecCCCcEEEEeeEeeeCCCCHHHHH
Confidence 689999999999855 777777888 99999 9988888888775531 10 0 1111
Q ss_pred -hccCCCEEEEeeCcccHHHHHHHhccccC--------CCCEEEEecCCCCH-HHHHHh
Q 024016 68 -VVEYSDVVVFSVKPQVVKDVAMQIRPLLS--------RKKLLVSVAAGVKL-KDLQEW 116 (274)
Q Consensus 68 -~~~~aDiIil~v~~~~~~~v~~~i~~~l~--------~~~~vis~~~g~~~-~~l~~~ 116 (274)
.+..+|+|.+++++...+.+...+.+.+. +.-.|++|.++... +.+++.
T Consensus 76 ~~~~~~dlvt~~v~~~~~~s~~~~l~~~L~~R~~~~~~~~~~VlsceN~~~ng~~L~~~ 134 (381)
T PRK02318 76 EAIAEADLVTTAVGPNILPFIAPLIAKGLKKRKAQGNTKPLNIIACENMIRGTSFLKKH 134 (381)
T ss_pred HHhcCCCEEEeCCCcccchhHHHHHHHHHHHHHHcCCCCCCEEEecCChhhHHHHHHHH
Confidence 23478999999988877766666554332 23378899888775 344433
No 213
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=97.91 E-value=4.3e-05 Score=60.28 Aligned_cols=77 Identities=13% Similarity=0.218 Sum_probs=57.2
Q ss_pred CCCCCeEEEEcccHH-HHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccHH
Q 024016 7 PAESFILGFIGAGKM-AESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVK 85 (274)
Q Consensus 7 ~~~~~~IgiIG~G~m-G~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~ 85 (274)
....++|.|||.|.| |..+++.|.+.|. +|++. +|+.+ +..+.+.++|+||.|++...+
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~----~V~v~-~r~~~--------------~l~~~l~~aDiVIsat~~~~i- 100 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNA----TVTVC-HSKTK--------------NLKEHTKQADIVIVAVGKPGL- 100 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCC----EEEEE-ECCch--------------hHHHHHhhCCEEEEcCCCCce-
Confidence 345689999999997 8889999999997 89999 88742 345678899999999975432
Q ss_pred HHHHHhccccCCCCEEEEecCC
Q 024016 86 DVAMQIRPLLSRKKLLVSVAAG 107 (274)
Q Consensus 86 ~v~~~i~~~l~~~~~vis~~~g 107 (274)
+-.+ .++++.++|++..+
T Consensus 101 -i~~~---~~~~~~viIDla~p 118 (168)
T cd01080 101 -VKGD---MVKPGAVVIDVGIN 118 (168)
T ss_pred -ecHH---HccCCeEEEEccCC
Confidence 1112 24567788887544
No 214
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=97.91 E-value=4.3e-05 Score=70.38 Aligned_cols=71 Identities=23% Similarity=0.359 Sum_probs=55.1
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCcee--ccCchhhccCCCEEEEeeCccc
Q 024016 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKV--LSDNNAVVEYSDVVVFSVKPQV 83 (274)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~--~~~~~~~~~~aDiIil~v~~~~ 83 (274)
.+..++++|+|+|.+|.+++..|.+.|+ +|+++ +|++++.+.+.+ .+... ..+..+ +.++|+||.|+|...
T Consensus 329 ~~~~k~vlIiGaGgiG~aia~~L~~~G~----~V~i~-~R~~~~~~~la~~~~~~~~~~~~~~~-l~~~DiVInatP~g~ 402 (477)
T PRK09310 329 PLNNQHVAIVGAGGAAKAIATTLARAGA----ELLIF-NRTKAHAEALASRCQGKAFPLESLPE-LHRIDIIINCLPPSV 402 (477)
T ss_pred CcCCCEEEEEcCcHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHHhccceechhHhcc-cCCCCEEEEcCCCCC
Confidence 3456799999999999999999999998 99999 999988887765 22221 122222 468999999998764
No 215
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=97.88 E-value=5.7e-05 Score=59.02 Aligned_cols=85 Identities=14% Similarity=0.254 Sum_probs=60.8
Q ss_pred CCCCCCCC--CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcC-ceeccC--chhhccCCCEE
Q 024016 1 MDAFPIPA--ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIG-VKVLSD--NNAVVEYSDVV 75 (274)
Q Consensus 1 ~~~~~~~~--~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g-~~~~~~--~~~~~~~aDiI 75 (274)
|..+|... +.++|.|||.|.+|...++.|++.|+ +|+++ ++. ..+++.+.+ +.+... ..+.++++|+|
T Consensus 2 ~~~~P~~l~l~~~~vlVvGGG~va~rka~~Ll~~ga----~V~VI-sp~--~~~~l~~l~~i~~~~~~~~~~dl~~a~lV 74 (157)
T PRK06719 2 YNMYPLMFNLHNKVVVIIGGGKIAYRKASGLKDTGA----FVTVV-SPE--ICKEMKELPYITWKQKTFSNDDIKDAHLI 74 (157)
T ss_pred CcccceEEEcCCCEEEEECCCHHHHHHHHHHHhCCC----EEEEE-cCc--cCHHHHhccCcEEEecccChhcCCCceEE
Confidence 44566654 45899999999999999999999999 99999 643 344444432 222111 12336789999
Q ss_pred EEeeCcccHHHHHHHhc
Q 024016 76 VFSVKPQVVKDVAMQIR 92 (274)
Q Consensus 76 il~v~~~~~~~v~~~i~ 92 (274)
|.++.++.+...+....
T Consensus 75 iaaT~d~e~N~~i~~~a 91 (157)
T PRK06719 75 YAATNQHAVNMMVKQAA 91 (157)
T ss_pred EECCCCHHHHHHHHHHH
Confidence 99999888877776554
No 216
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=97.87 E-value=6.4e-05 Score=65.21 Aligned_cols=91 Identities=23% Similarity=0.324 Sum_probs=60.5
Q ss_pred EEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHH----HHH----c--Ccee--ccCchhhccCCCEEEEeeC
Q 024016 13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA----FES----I--GVKV--LSDNNAVVEYSDVVVFSVK 80 (274)
Q Consensus 13 IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~----l~~----~--g~~~--~~~~~~~~~~aDiIil~v~ 80 (274)
|+|||+|.||..++..+...|+. +|+++ |+++++.+. +.. . ..++ ..+ .+.+++||+||++..
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~---eV~L~-Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d-~~~l~dADiVIit~g 75 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELG---DVVLL-DIVEGLPQGKALDISQAAPILGSDTKVTGTND-YEDIAGSDVVVITAG 75 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCc---EEEEE-eCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCC-HHHhCCCCEEEEecC
Confidence 68999999999999999888752 89999 998765421 111 1 1222 234 456899999999872
Q ss_pred -c---c------------cHHHHHHHhccccCCCCEEEEecCCCC
Q 024016 81 -P---Q------------VVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 81 -~---~------------~~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
| . .++++++++.+.. |+.++|..+++..
T Consensus 76 ~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~-p~~~iIv~sNP~d 119 (300)
T cd01339 76 IPRKPGMSRDDLLGTNAKIVKEVAENIKKYA-PNAIVIVVTNPLD 119 (300)
T ss_pred CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHH
Confidence 1 1 1445556666655 5556666666654
No 217
>PRK05442 malate dehydrogenase; Provisional
Probab=97.86 E-value=8.2e-05 Score=65.05 Aligned_cols=101 Identities=16% Similarity=0.228 Sum_probs=66.4
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCC---CCcEEEEeCCCHH--HHH----HHHH------cCceeccCchhhccCC
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKSGVLP---PDRICTAVHSNLK--RRD----AFES------IGVKVLSDNNAVVEYS 72 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~g~~~---~~~v~v~~~r~~~--~~~----~l~~------~g~~~~~~~~~~~~~a 72 (274)
+.+||+|||+ |++|++++..|...+... +.++.++ |+++. +++ ++.. ....+..+..+.+++|
T Consensus 3 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~Li-Di~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~da 81 (326)
T PRK05442 3 APVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLL-EIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKDA 81 (326)
T ss_pred CCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEE-ecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCCC
Confidence 5579999998 999999999998877531 1268888 88542 221 2221 1234445566778999
Q ss_pred CEEEEeeC----cc------------cHHHHHHHhccccCCCCEEEEecCCCCH
Q 024016 73 DVVVFSVK----PQ------------VVKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (274)
Q Consensus 73 DiIil~v~----~~------------~~~~v~~~i~~~l~~~~~vis~~~g~~~ 110 (274)
|+||++-- +. .++++.++|..+.+++.+++-.++++..
T Consensus 82 DiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv 135 (326)
T PRK05442 82 DVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPANT 135 (326)
T ss_pred CEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchHH
Confidence 99999752 22 1344455666655567777777777654
No 218
>PLN02602 lactate dehydrogenase
Probab=97.85 E-value=0.00015 Score=64.04 Aligned_cols=96 Identities=18% Similarity=0.310 Sum_probs=63.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH----H----cC-ceecc-CchhhccCCCEEEEee-
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE----S----IG-VKVLS-DNNAVVEYSDVVVFSV- 79 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~----~----~g-~~~~~-~~~~~~~~aDiIil~v- 79 (274)
+||+|||+|++|++++..|...+.. .++.++ |+++++++..+ . .+ ..+.. ...+.+++||+||++-
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~--~el~Li-Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy~~~~daDiVVitAG 114 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLA--DELALV-DVNPDKLRGEMLDLQHAAAFLPRTKILASTDYAVTAGSDLCIVTAG 114 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCC--CEEEEE-eCCCchhhHHHHHHHhhhhcCCCCEEEeCCCHHHhCCCCEEEECCC
Confidence 6999999999999999999988863 379999 99876543222 1 11 33432 2334589999999985
Q ss_pred -C--ccc------------HHHHHHHhccccCCCCEEEEecCCCCH
Q 024016 80 -K--PQV------------VKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (274)
Q Consensus 80 -~--~~~------------~~~v~~~i~~~l~~~~~vis~~~g~~~ 110 (274)
| |.. ++++...+..+ .|+.++|..+++...
T Consensus 115 ~~~k~g~tR~dll~~N~~I~~~i~~~I~~~-~p~~ivivvtNPvdv 159 (350)
T PLN02602 115 ARQIPGESRLNLLQRNVALFRKIIPELAKY-SPDTILLIVSNPVDV 159 (350)
T ss_pred CCCCcCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCchHH
Confidence 2 221 22333445544 466677777776653
No 219
>PRK15076 alpha-galactosidase; Provisional
Probab=97.83 E-value=0.00012 Score=66.47 Aligned_cols=68 Identities=18% Similarity=0.269 Sum_probs=47.5
Q ss_pred CeEEEEcccHHHHHHHH--HHH-hCCCCCCCcEEEEeCCCHHHHHHHHH--------cC----ceeccCchhhccCCCEE
Q 024016 11 FILGFIGAGKMAESIAK--GVA-KSGVLPPDRICTAVHSNLKRRDAFES--------IG----VKVLSDNNAVVEYSDVV 75 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~--~L~-~~g~~~~~~v~v~~~r~~~~~~~l~~--------~g----~~~~~~~~~~~~~aDiI 75 (274)
+||+|||+|.||.+.+. .+. ..+. ...+|.++ |+++++++.... .+ +..++|..+++++||+|
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l-~~~evvLv-Did~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADfV 79 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPAL-RDAEIALM-DIDPERLEESEIVARKLAESLGASAKITATTDRREALQGADYV 79 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccC-CCCEEEEE-CCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCEE
Confidence 69999999999966655 554 2222 33389999 999987663211 22 23345657889999999
Q ss_pred EEeeC
Q 024016 76 VFSVK 80 (274)
Q Consensus 76 il~v~ 80 (274)
|.+..
T Consensus 80 v~ti~ 84 (431)
T PRK15076 80 INAIQ 84 (431)
T ss_pred eEeee
Confidence 99984
No 220
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=97.83 E-value=7.7e-05 Score=64.65 Aligned_cols=93 Identities=15% Similarity=0.279 Sum_probs=62.8
Q ss_pred EEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-------c-C-ceec-cCchhhccCCCEEEEeeC--
Q 024016 13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-------I-G-VKVL-SDNNAVVEYSDVVVFSVK-- 80 (274)
Q Consensus 13 IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-------~-g-~~~~-~~~~~~~~~aDiIil~v~-- 80 (274)
|+|||+|.+|++++..|+..|.. .+++++ |+++++++.... . . .++. .+..+.+++||+||++..
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~--~el~l~-D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~~~l~~aDiVIitag~p 77 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLA--SELVLV-DVNEEKAKGDALDLSHASAFLATGTIVRGGDYADAADADIVVITAGAP 77 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCC--CEEEEE-eCCccHHHHHHHhHHHhccccCCCeEEECCCHHHhCCCCEEEEcCCCC
Confidence 68999999999999999988852 279999 998877654432 1 1 1221 222567899999999973
Q ss_pred c--c------------cHHHHHHHhccccCCCCEEEEecCCCC
Q 024016 81 P--Q------------VVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 81 ~--~------------~~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
. . .++++...+..+- |+..++..+++..
T Consensus 78 ~~~~~~R~~l~~~n~~i~~~~~~~i~~~~-p~~~viv~sNP~d 119 (300)
T cd00300 78 RKPGETRLDLINRNAPILRSVITNLKKYG-PDAIILVVSNPVD 119 (300)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccChHH
Confidence 2 1 1344445555554 6667777766654
No 221
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=97.83 E-value=0.00034 Score=61.56 Aligned_cols=99 Identities=13% Similarity=0.211 Sum_probs=70.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCC--CCCCCcEEEEeCCCHHHHHHHHH-cCceeccCchhhccCCCEEEEeeCc----
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSG--VLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKP---- 81 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g--~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDiIil~v~~---- 81 (274)
+..||||||+ .||...+..+.+.. + ++...++|++++++++.+ .|+..++|.++++++.|++++++|.
T Consensus 2 ~~~rVgViG~-~~G~~h~~al~~~~~~~----eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt~~P~ 76 (343)
T TIGR01761 2 DVQSVVVCGT-RFGQFYLAAFAAAPERF----ELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRSAIVG 76 (343)
T ss_pred CCcEEEEEeH-HHHHHHHHHHHhCCCCc----EEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCCCCCC
Confidence 3579999999 68999999987753 4 665444999999988887 7887888999999888888888753
Q ss_pred ccHHHHHHHhccccCCCCEEEEecCCCCHHHHHHh
Q 024016 82 QVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEW 116 (274)
Q Consensus 82 ~~~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~ 116 (274)
..-.++..+. +..|+-|+ +-+++..++.++.
T Consensus 77 ~~H~e~a~~a---L~aGkHVL-~EKPla~~Ea~el 107 (343)
T TIGR01761 77 GQGSALARAL---LARGIHVL-QEHPLHPRDIQDL 107 (343)
T ss_pred ccHHHHHHHH---HhCCCeEE-EcCCCCHHHHHHH
Confidence 3444544443 34555555 4466665544443
No 222
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=97.82 E-value=0.00016 Score=58.82 Aligned_cols=35 Identities=17% Similarity=0.411 Sum_probs=30.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~ 47 (274)
+..||+|+|+|.||+.++..|...|+ .+++++ |++
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gv---g~i~lv-D~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGI---GKLILV-DFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCC---CEEEEE-CCC
Confidence 34689999999999999999999997 258888 777
No 223
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=97.82 E-value=0.0001 Score=54.46 Aligned_cols=94 Identities=18% Similarity=0.315 Sum_probs=64.4
Q ss_pred CeEEEEc----ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccHHH
Q 024016 11 FILGFIG----AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKD 86 (274)
Q Consensus 11 ~~IgiIG----~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~~ 86 (274)
++|+||| -+.+|..+.++|.++|+ +|+.. +...... .|...+.+..|.-...|++++++|++.+.+
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~----~v~~V-np~~~~i-----~G~~~y~sl~e~p~~iDlavv~~~~~~~~~ 70 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGY----EVYPV-NPKGGEI-----LGIKCYPSLAEIPEPIDLAVVCVPPDKVPE 70 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-----EEEEE-STTCSEE-----TTEE-BSSGGGCSST-SEEEE-S-HHHHHH
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCC----EEEEE-CCCceEE-----CcEEeeccccCCCCCCCEEEEEcCHHHHHH
Confidence 4799999 79999999999999998 99988 7665332 578888888874478999999999999999
Q ss_pred HHHHhccccCCCCEEEEecCCCCHHHHHHhh
Q 024016 87 VAMQIRPLLSRKKLLVSVAAGVKLKDLQEWT 117 (274)
Q Consensus 87 v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~ 117 (274)
+++++... ..+.+++. .+...+++.+..
T Consensus 71 ~v~~~~~~-g~~~v~~~--~g~~~~~~~~~a 98 (116)
T PF13380_consen 71 IVDEAAAL-GVKAVWLQ--PGAESEELIEAA 98 (116)
T ss_dssp HHHHHHHH-T-SEEEE---TTS--HHHHHHH
T ss_pred HHHHHHHc-CCCEEEEE--cchHHHHHHHHH
Confidence 99987654 34444442 344444554443
No 224
>PTZ00325 malate dehydrogenase; Provisional
Probab=97.79 E-value=0.00013 Score=63.64 Aligned_cols=100 Identities=15% Similarity=0.221 Sum_probs=61.8
Q ss_pred CCCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHH--HHHH--cCcee--ccCc---hhhccCCCEE
Q 024016 6 IPAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD--AFES--IGVKV--LSDN---NAVVEYSDVV 75 (274)
Q Consensus 6 ~~~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~--~l~~--~g~~~--~~~~---~~~~~~aDiI 75 (274)
--.++.||+|||+ |++|+.++..|...+. ..++.++ |++....+ ++.. ....+ .+++ .+.++++|+|
T Consensus 4 ~~~~~~KI~IiGaaG~VGs~~a~~l~~~~~--~~elvL~-Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvV 80 (321)
T PTZ00325 4 SALKMFKVAVLGAAGGIGQPLSLLLKQNPH--VSELSLY-DIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLV 80 (321)
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHhcCCC--CCEEEEE-ecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEE
Confidence 3345679999999 9999999999986664 2379999 98432222 2222 11222 2221 5778999999
Q ss_pred EEee--C--cc------------cHHHHHHHhccccCCCCEEEEecCCCC
Q 024016 76 VFSV--K--PQ------------VVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 76 il~v--~--~~------------~~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
+++. | +. .++++++.+..+ .++.+++-.++++.
T Consensus 81 VitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~-~~~~iviv~SNPvd 129 (321)
T PTZ00325 81 LICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASS-APKAIVGIVSNPVN 129 (321)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCcHH
Confidence 9987 2 21 122333344443 45667776667654
No 225
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=97.79 E-value=0.00017 Score=58.85 Aligned_cols=79 Identities=15% Similarity=0.138 Sum_probs=58.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-HHHHHHHHcC-ceeccC--chhhccCCCEEEEeeCcccH
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-KRRDAFESIG-VKVLSD--NNAVVEYSDVVVFSVKPQVV 84 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~-~~~~~l~~~g-~~~~~~--~~~~~~~aDiIil~v~~~~~ 84 (274)
+.++|.|||.|.+|...++.|++.|. +|+++ +++. +....+.+.+ +..... ..+.+.++|+||.|+.++.+
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga----~V~VI-s~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~el 83 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGA----HIVVI-SPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDPRV 83 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC----eEEEE-cCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCHHH
Confidence 46799999999999999999999998 99999 8764 2334444433 333211 12346789999999998888
Q ss_pred HHHHHHhc
Q 024016 85 KDVAMQIR 92 (274)
Q Consensus 85 ~~v~~~i~ 92 (274)
...+.+..
T Consensus 84 N~~i~~~a 91 (202)
T PRK06718 84 NEQVKEDL 91 (202)
T ss_pred HHHHHHHH
Confidence 77665554
No 226
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=97.78 E-value=0.00011 Score=63.10 Aligned_cols=70 Identities=21% Similarity=0.220 Sum_probs=53.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cC----ceecc---CchhhccCCCEEEEeeC
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IG----VKVLS---DNNAVVEYSDVVVFSVK 80 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g----~~~~~---~~~~~~~~aDiIil~v~ 80 (274)
+.+++.|||+|-+|++++..|.+.|. .+|+++ +|++++++.+.+ .+ +.... +..+.+.++|+||-|+|
T Consensus 124 ~~k~vlvlGaGGaarai~~aL~~~G~---~~i~I~-nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp 199 (282)
T TIGR01809 124 AGFRGLVIGAGGTSRAAVYALASLGV---TDITVI-NRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVP 199 (282)
T ss_pred CCceEEEEcCcHHHHHHHHHHHHcCC---CeEEEE-eCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCC
Confidence 45689999999999999999999986 379999 999999998876 21 11111 12244567899999998
Q ss_pred cc
Q 024016 81 PQ 82 (274)
Q Consensus 81 ~~ 82 (274)
..
T Consensus 200 ~g 201 (282)
T TIGR01809 200 AD 201 (282)
T ss_pred CC
Confidence 54
No 227
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=97.76 E-value=0.00034 Score=66.48 Aligned_cols=89 Identities=12% Similarity=0.169 Sum_probs=65.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceec-cCc--hh-----hccCCCEEEEeeCc
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-SDN--NA-----VVEYSDVVVFSVKP 81 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~-~~~--~~-----~~~~aDiIil~v~~ 81 (274)
..+|-|+|+|++|..+++.|.+.|+ ++++. |+++++.+.+.+.|..+. .|. .+ -+++||.+++++++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~----~vvvI-D~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d 474 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKM----RITVL-ERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNE 474 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCC----CEEEE-ECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCC
Confidence 3589999999999999999999999 99999 999999999988776432 221 12 25689999999987
Q ss_pred ccHH-HHHHHhccccCCCCEEEEe
Q 024016 82 QVVK-DVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 82 ~~~~-~v~~~i~~~l~~~~~vis~ 104 (274)
+... .++..++. ..|+..++.-
T Consensus 475 ~~~n~~i~~~~r~-~~p~~~IiaR 497 (601)
T PRK03659 475 PEDTMKIVELCQQ-HFPHLHILAR 497 (601)
T ss_pred HHHHHHHHHHHHH-HCCCCeEEEE
Confidence 6543 44444443 3455455543
No 228
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=97.76 E-value=0.00026 Score=63.06 Aligned_cols=100 Identities=15% Similarity=0.155 Sum_probs=67.1
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCC-CCcEEE----EeCCCHHHHHHHH----H------cCceeccCchhhccCCC
Q 024016 10 SFILGFIGA-GKMAESIAKGVAKSGVLP-PDRICT----AVHSNLKRRDAFE----S------IGVKVLSDNNAVVEYSD 73 (274)
Q Consensus 10 ~~~IgiIG~-G~mG~~~a~~L~~~g~~~-~~~v~v----~~~r~~~~~~~l~----~------~g~~~~~~~~~~~~~aD 73 (274)
..||+|||+ |++|++++..|...+... ..+|.+ + |++.++++..+ . ..+.+..+..+.+++||
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~di-D~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~kdaD 122 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGS-ERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVFEDAD 122 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEecc-CccchhhhHHHHHHHHhhhhhcCceEEecCCHHHhCCCC
Confidence 369999999 999999999999888743 123444 4 77777654322 1 13444456667899999
Q ss_pred EEEEee--C--cc-c-----------HHHHHHHhccccCCCCEEEEecCCCCH
Q 024016 74 VVVFSV--K--PQ-V-----------VKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (274)
Q Consensus 74 iIil~v--~--~~-~-----------~~~v~~~i~~~l~~~~~vis~~~g~~~ 110 (274)
+||++- | |. . ++++...|..+.+|+.++|-+++++..
T Consensus 123 IVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPvDv 175 (387)
T TIGR01757 123 WALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPCNT 175 (387)
T ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcHHH
Confidence 999975 2 22 1 344445566655577777777776653
No 229
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.73 E-value=0.00014 Score=63.08 Aligned_cols=96 Identities=17% Similarity=0.252 Sum_probs=62.9
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHH--HHHHH--cCceec---c--CchhhccCCCEEEEee-
Q 024016 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRR--DAFES--IGVKVL---S--DNNAVVEYSDVVVFSV- 79 (274)
Q Consensus 11 ~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~--~~l~~--~g~~~~---~--~~~~~~~~aDiIil~v- 79 (274)
|||+|||+ |++|++++..|...+.. .++.++ |++..+. -+|.. ....+. . ++.+.+++||+||++.
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~--~elvLi-Di~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG 77 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLV--SELALY-DIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAG 77 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCC--cEEEEE-ecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCC
Confidence 59999999 99999999999888862 378999 8872111 12222 112222 2 2257789999999986
Q ss_pred -C--ccc------------HHHHHHHhccccCCCCEEEEecCCCCH
Q 024016 80 -K--PQV------------VKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (274)
Q Consensus 80 -~--~~~------------~~~v~~~i~~~l~~~~~vis~~~g~~~ 110 (274)
| |.. ++++.+.+..+ .|+.+++..+++...
T Consensus 78 ~~~k~g~tR~dll~~N~~i~~~i~~~i~~~-~p~a~vivvtNPvDv 122 (310)
T cd01337 78 VPRKPGMTRDDLFNINAGIVRDLATAVAKA-CPKALILIISNPVNS 122 (310)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccCchhh
Confidence 2 221 23333445554 577888888888754
No 230
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=97.73 E-value=0.00011 Score=58.70 Aligned_cols=61 Identities=21% Similarity=0.357 Sum_probs=49.1
Q ss_pred EEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceec----cC---chhhccCCCEEEEeeC
Q 024016 13 LGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL----SD---NNAVVEYSDVVVFSVK 80 (274)
Q Consensus 13 IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~----~~---~~~~~~~aDiIil~v~ 80 (274)
|.|+|+ |.+|..+++.|++.|+ +|++. .|++++.+. ..++++. .+ ..++++++|.||.+++
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~----~V~~~-~R~~~~~~~--~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~ 69 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGH----EVTAL-VRSPSKAED--SPGVEIIQGDLFDPDSVKAALKGADAVIHAAG 69 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTS----EEEEE-ESSGGGHHH--CTTEEEEESCTTCHHHHHHHHTTSSEEEECCH
T ss_pred eEEECCCChHHHHHHHHHHHCCC----EEEEE-ecCchhccc--ccccccceeeehhhhhhhhhhhhcchhhhhhh
Confidence 678985 9999999999999999 99999 999998876 4454432 12 2456779999999995
No 231
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=97.72 E-value=0.00037 Score=60.92 Aligned_cols=101 Identities=15% Similarity=0.218 Sum_probs=65.3
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCC---CCcEEEEeCCCH--HHHH----HHHH------cCceeccCchhhccCC
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKSGVLP---PDRICTAVHSNL--KRRD----AFES------IGVKVLSDNNAVVEYS 72 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~g~~~---~~~v~v~~~r~~--~~~~----~l~~------~g~~~~~~~~~~~~~a 72 (274)
+..||+|||+ |++|++++..|...+... ..++.++ |+++ ++++ ++.. .+..+..+..+.+++|
T Consensus 2 ~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~-Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~da 80 (323)
T TIGR01759 2 KPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLL-DIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDV 80 (323)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEE-ecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCC
Confidence 4469999998 999999999999887621 1168888 8854 2222 1221 1233434556778999
Q ss_pred CEEEEee--C--cc------------cHHHHHHHhccccCCCCEEEEecCCCCH
Q 024016 73 DVVVFSV--K--PQ------------VVKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (274)
Q Consensus 73 DiIil~v--~--~~------------~~~~v~~~i~~~l~~~~~vis~~~g~~~ 110 (274)
|+||++- | +. .++++..++..+-.|+.+++-.++++..
T Consensus 81 DvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv 134 (323)
T TIGR01759 81 DAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPANT 134 (323)
T ss_pred CEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHH
Confidence 9999986 2 22 1344445566654447777777776653
No 232
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=97.72 E-value=0.00029 Score=63.82 Aligned_cols=99 Identities=11% Similarity=0.143 Sum_probs=68.2
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhC-------CCCCCCcEEEEeCCCHHHHHHHH----H------cCceeccCchhhcc
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKS-------GVLPPDRICTAVHSNLKRRDAFE----S------IGVKVLSDNNAVVE 70 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~-------g~~~~~~v~v~~~r~~~~~~~l~----~------~g~~~~~~~~~~~~ 70 (274)
+..||+|||+ |++|.+++..|... +.. .++.++ |+++++++-.+ . ..+.+..+..+.++
T Consensus 99 ~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~--~eLvli-D~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~k 175 (444)
T PLN00112 99 KLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIA--LKLLGS-ERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQ 175 (444)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcc--cEEEEE-cCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhC
Confidence 3469999999 99999999999887 442 268888 99888764322 1 12344456678899
Q ss_pred CCCEEEEee--C--ccc------------HHHHHHHhccccCCCCEEEEecCCCCH
Q 024016 71 YSDVVVFSV--K--PQV------------VKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (274)
Q Consensus 71 ~aDiIil~v--~--~~~------------~~~v~~~i~~~l~~~~~vis~~~g~~~ 110 (274)
+||+||++- | |.. ++++.+.|..+..++.++|-++++...
T Consensus 176 daDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvDv 231 (444)
T PLN00112 176 DAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCNT 231 (444)
T ss_pred cCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHHH
Confidence 999999986 2 221 344445565544577777777776653
No 233
>PRK10206 putative oxidoreductase; Provisional
Probab=97.71 E-value=0.00028 Score=62.38 Aligned_cols=77 Identities=17% Similarity=0.161 Sum_probs=52.8
Q ss_pred CeEEEEcccHHHHH-HHHHHHhC--CCCCCCcEEEEeCCCHHHHHHHHHcC-ceeccCchhhcc--CCCEEEEeeCcccH
Q 024016 11 FILGFIGAGKMAES-IAKGVAKS--GVLPPDRICTAVHSNLKRRDAFESIG-VKVLSDNNAVVE--YSDVVVFSVKPQVV 84 (274)
Q Consensus 11 ~~IgiIG~G~mG~~-~a~~L~~~--g~~~~~~v~v~~~r~~~~~~~l~~~g-~~~~~~~~~~~~--~aDiIil~v~~~~~ 84 (274)
.||||||+|.++.. .+..+... ++ ++..++++++++.+...+.+ +..++|.+++++ +.|+|++|+|+...
T Consensus 2 irvgiiG~G~~~~~~h~~~~~~~~~~~----~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~~H 77 (344)
T PRK10206 2 INCAFIGFGKSTTRYHLPYVLNRKDSW----HVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSH 77 (344)
T ss_pred eEEEEECCCHHHhheehhhHhcCCCCE----EEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCchHH
Confidence 58999999998753 34545332 34 66543399986654333454 567778888886 57999999998876
Q ss_pred HHHHHHh
Q 024016 85 KDVAMQI 91 (274)
Q Consensus 85 ~~v~~~i 91 (274)
.++....
T Consensus 78 ~~~~~~a 84 (344)
T PRK10206 78 FEYAKRA 84 (344)
T ss_pred HHHHHHH
Confidence 6665543
No 234
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=97.70 E-value=0.00016 Score=62.88 Aligned_cols=95 Identities=24% Similarity=0.309 Sum_probs=61.5
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCH--HHHHHHH--------HcC--cee--ccCchhhccCCCEE
Q 024016 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNL--KRRDAFE--------SIG--VKV--LSDNNAVVEYSDVV 75 (274)
Q Consensus 11 ~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~--~~~~~l~--------~~g--~~~--~~~~~~~~~~aDiI 75 (274)
|||+|||+ |.+|..++..|...|+. .+|+++ +|++ ++++... ..+ ..+ ..+ .+.+.+||+|
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~--~~v~lv-d~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d-~~~l~~aDiV 76 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVV--KEINLI-SRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSD-LSDVAGSDIV 76 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCC--CEEEEE-ECcccccccccccchhhhchhccCCCcEEEECCC-HHHhCCCCEE
Confidence 69999998 99999999999999872 258898 8854 3331111 112 222 234 4568999999
Q ss_pred EEeeC--c--c-c-----------HHHHHHHhccccCCCCEEEEecCCCCH
Q 024016 76 VFSVK--P--Q-V-----------VKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (274)
Q Consensus 76 il~v~--~--~-~-----------~~~v~~~i~~~l~~~~~vis~~~g~~~ 110 (274)
|+|.. . . . ++++...+.... ++.++|-.+++++.
T Consensus 77 iitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~-~~~~viv~~npvd~ 126 (309)
T cd05294 77 IITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFA-PDTKILVVTNPVDV 126 (309)
T ss_pred EEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCchHH
Confidence 99983 1 1 1 334444555544 55566666676654
No 235
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=97.70 E-value=6.9e-05 Score=59.27 Aligned_cols=98 Identities=13% Similarity=0.174 Sum_probs=64.9
Q ss_pred CCCCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceec-c-------------------
Q 024016 4 FPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-S------------------- 63 (274)
Q Consensus 4 ~~~~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~-~------------------- 63 (274)
.+......||.|+|.|+.|..-+..+...|+ +++++ +.++++.+.+...+.... .
T Consensus 14 ~~~~~~p~~vvv~G~G~vg~gA~~~~~~lGa----~v~~~-d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 88 (168)
T PF01262_consen 14 GPGGVPPAKVVVTGAGRVGQGAAEIAKGLGA----EVVVP-DERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEH 88 (168)
T ss_dssp TTTEE-T-EEEEESTSHHHHHHHHHHHHTT-----EEEEE-ESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHH
T ss_pred CCCCCCCeEEEEECCCHHHHHHHHHHhHCCC----EEEec-cCCHHHHHhhhcccCceEEEcccccccccccchhhhhHH
Confidence 3444456799999999999999999999999 99999 999988887776443211 1
Q ss_pred ------CchhhccCCCEEEEee--CcccHHHHH-HHhccccCCCCEEEEecC
Q 024016 64 ------DNNAVVEYSDVVVFSV--KPQVVKDVA-MQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 64 ------~~~~~~~~aDiIil~v--~~~~~~~v~-~~i~~~l~~~~~vis~~~ 106 (274)
...+.+..+|+||.+. +....+.++ ++....++++.+|++++.
T Consensus 89 ~~~~~~~f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis~ 140 (168)
T PF01262_consen 89 PESYESNFAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDISC 140 (168)
T ss_dssp CCHHHHHHHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETTG
T ss_pred HHHhHHHHHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEEe
Confidence 1234567899999865 444444444 233445679988888753
No 236
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=97.70 E-value=0.00031 Score=69.73 Aligned_cols=80 Identities=21% Similarity=0.230 Sum_probs=58.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCC----------CCcEEEEeCCCHHHHHHHHH-c-Cc---ee-ccCchhhc---c
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLP----------PDRICTAVHSNLKRRDAFES-I-GV---KV-LSDNNAVV---E 70 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~----------~~~v~v~~~r~~~~~~~l~~-~-g~---~~-~~~~~~~~---~ 70 (274)
++||+|||+|.||+..+..|.+...+. ...|++. |+++++++++.+ . ++ .+ +.+..++. +
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~Va-D~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~ 647 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVA-SLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVS 647 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEE-CCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhc
Confidence 569999999999999999998754211 0137888 999999888876 3 52 33 34544443 5
Q ss_pred CCCEEEEeeCcccHHHHHHH
Q 024016 71 YSDVVVFSVKPQVVKDVAMQ 90 (274)
Q Consensus 71 ~aDiIil~v~~~~~~~v~~~ 90 (274)
++|+|+.|+|+....++...
T Consensus 648 ~~DaVIsalP~~~H~~VAka 667 (1042)
T PLN02819 648 QVDVVISLLPASCHAVVAKA 667 (1042)
T ss_pred CCCEEEECCCchhhHHHHHH
Confidence 79999999998766666544
No 237
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=97.69 E-value=0.00041 Score=65.41 Aligned_cols=89 Identities=9% Similarity=0.236 Sum_probs=63.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceec-cCc--hh-----hccCCCEEEEeeCcc
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-SDN--NA-----VVEYSDVVVFSVKPQ 82 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~-~~~--~~-----~~~~aDiIil~v~~~ 82 (274)
-+|-|+|+|++|+.+++.|.+.|+ +++++ |+++++.+.+.+.|..+. .|. .+ -++++|.++++++++
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~----~vvvI-d~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~ 492 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGI----PLVVI-ETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNG 492 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCC----CEEEE-ECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCCh
Confidence 478999999999999999999999 99999 999999999988776432 221 22 146899999999765
Q ss_pred cHH-HHHHHhccccCCCCEEEEec
Q 024016 83 VVK-DVAMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 83 ~~~-~v~~~i~~~l~~~~~vis~~ 105 (274)
.-. .+...+... .++..++.-.
T Consensus 493 ~~~~~iv~~~~~~-~~~~~iiar~ 515 (558)
T PRK10669 493 YEAGEIVASAREK-RPDIEIIARA 515 (558)
T ss_pred HHHHHHHHHHHHH-CCCCeEEEEE
Confidence 432 343334333 3555555443
No 238
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=97.69 E-value=0.00021 Score=59.26 Aligned_cols=96 Identities=21% Similarity=0.300 Sum_probs=64.6
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC----HHHH-------HHHHH-cCc-eeccCchhhccCCCE
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN----LKRR-------DAFES-IGV-KVLSDNNAVVEYSDV 74 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~----~~~~-------~~l~~-~g~-~~~~~~~~~~~~aDi 74 (274)
.+.+||.|+|+|.+|.+++..|.+.|. +..+|+++ ||+ .++. +.+.+ .+. ....+..+.++++|+
T Consensus 23 l~~~rvlvlGAGgAg~aiA~~L~~~G~-~~~~i~iv-dr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~dv 100 (226)
T cd05311 23 IEEVKIVINGAGAAGIAIARLLLAAGA-KPENIVVV-DSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGADV 100 (226)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHcCc-CcceEEEE-eCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCCE
Confidence 456799999999999999999999986 12269999 998 4443 22332 221 111245567788999
Q ss_pred EEEeeCcccH-HHHHHHhccccCCCCEEEEecCCCC
Q 024016 75 VVFSVKPQVV-KDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 75 Iil~v~~~~~-~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
||-++++..+ +++++.+ .++.++..++++.+
T Consensus 101 lIgaT~~G~~~~~~l~~m----~~~~ivf~lsnP~~ 132 (226)
T cd05311 101 FIGVSRPGVVKKEMIKKM----AKDPIVFALANPVP 132 (226)
T ss_pred EEeCCCCCCCCHHHHHhh----CCCCEEEEeCCCCC
Confidence 9999986554 3444443 36677777776654
No 239
>PRK05086 malate dehydrogenase; Provisional
Probab=97.69 E-value=0.00018 Score=62.70 Aligned_cols=95 Identities=19% Similarity=0.239 Sum_probs=60.8
Q ss_pred CeEEEEcc-cHHHHHHHHHHHh-CCCCCCCcEEEEeCCCHHHH---HHHHHcC--cee----ccCchhhccCCCEEEEee
Q 024016 11 FILGFIGA-GKMAESIAKGVAK-SGVLPPDRICTAVHSNLKRR---DAFESIG--VKV----LSDNNAVVEYSDVVVFSV 79 (274)
Q Consensus 11 ~~IgiIG~-G~mG~~~a~~L~~-~g~~~~~~v~v~~~r~~~~~---~~l~~~g--~~~----~~~~~~~~~~aDiIil~v 79 (274)
|||+|||+ |.+|++++..|.. .+. ..++.++ +|++... -.+...+ ..+ .++..+.++++|+||+|.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~--~~el~L~-d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIita 77 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPA--GSELSLY-DIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISA 77 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCC--ccEEEEE-ecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcC
Confidence 69999999 9999999988854 232 1278888 8875421 1222212 222 234457788999999997
Q ss_pred C----cc------------cHHHHHHHhccccCCCCEEEEecCCCC
Q 024016 80 K----PQ------------VVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 80 ~----~~------------~~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
- +. .++++++.+..+ .++.+++..+++..
T Consensus 78 G~~~~~~~~R~dll~~N~~i~~~ii~~i~~~-~~~~ivivvsNP~D 122 (312)
T PRK05086 78 GVARKPGMDRSDLFNVNAGIVKNLVEKVAKT-CPKACIGIITNPVN 122 (312)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccCchH
Confidence 2 22 234444555554 56778887778764
No 240
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.65 E-value=0.00033 Score=61.26 Aligned_cols=99 Identities=14% Similarity=0.160 Sum_probs=63.8
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCC---CCcEEEEeCCCHHH--HH----HHHH------cCceeccCchhhccCCCE
Q 024016 11 FILGFIGA-GKMAESIAKGVAKSGVLP---PDRICTAVHSNLKR--RD----AFES------IGVKVLSDNNAVVEYSDV 74 (274)
Q Consensus 11 ~~IgiIG~-G~mG~~~a~~L~~~g~~~---~~~v~v~~~r~~~~--~~----~l~~------~g~~~~~~~~~~~~~aDi 74 (274)
+||+|||+ |++|++++..|...|... ..++.++ |+++.. ++ ++.. ..+.+..+..+.+++||+
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~-Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDi 81 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLL-ELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADW 81 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEE-ecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCE
Confidence 59999999 999999999999877631 1168888 884322 21 1221 123444455677899999
Q ss_pred EEEee--C--cc-c-----------HHHHHHHhccccCCCCEEEEecCCCCH
Q 024016 75 VVFSV--K--PQ-V-----------VKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (274)
Q Consensus 75 Iil~v--~--~~-~-----------~~~v~~~i~~~l~~~~~vis~~~g~~~ 110 (274)
||++- | |. . ++++..++..+-.|+.++|-.++++..
T Consensus 82 vvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~ 133 (322)
T cd01338 82 ALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNT 133 (322)
T ss_pred EEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHH
Confidence 99986 2 22 1 344445565554346677777776653
No 241
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=97.65 E-value=0.00044 Score=63.85 Aligned_cols=91 Identities=14% Similarity=0.205 Sum_probs=65.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceec--cCc----------------------
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL--SDN---------------------- 65 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~--~~~---------------------- 65 (274)
..||.|||+|.+|..-+..+...|. +|+++ |+++++.+...+.|++.. +..
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA----~V~a~-D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~ 239 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGA----IVRAF-DTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEM 239 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHH
Confidence 4699999999999999988888897 89999 999999998888887621 110
Q ss_pred ---hhhccCCCEEEEeeC-cc-cHHHH-HHHhccccCCCCEEEEec
Q 024016 66 ---NAVVEYSDVVVFSVK-PQ-VVKDV-AMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 66 ---~~~~~~aDiIil~v~-~~-~~~~v-~~~i~~~l~~~~~vis~~ 105 (274)
.+.+.++|+||.|+. |. -...+ .++....+++|.+|+++.
T Consensus 240 ~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg 285 (509)
T PRK09424 240 ALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLA 285 (509)
T ss_pred HHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEc
Confidence 011246999999984 22 12222 244445567888888764
No 242
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=97.63 E-value=5.1e-05 Score=62.45 Aligned_cols=79 Identities=18% Similarity=0.346 Sum_probs=52.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHH--hCCCCCCCcEEEEeCCCHHHHHHHHHcCcee--ccCchhhcc--CCCEEEEeeCcc
Q 024016 9 ESFILGFIGAGKMAESIAKGVA--KSGVLPPDRICTAVHSNLKRRDAFESIGVKV--LSDNNAVVE--YSDVVVFSVKPQ 82 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~--~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~--~~~~~~~~~--~aDiIil~v~~~ 82 (274)
...+|+|||+|.+|..+++.+. ..|+ ++..++|+++++..... .|..+ ..+..+.++ +.|++++|+|+.
T Consensus 83 ~~~rV~IIGaG~iG~~l~~~~~~~~~g~----~ivgv~D~d~~~~~~~i-~g~~v~~~~~l~~li~~~~iD~ViIa~P~~ 157 (213)
T PRK05472 83 RTWNVALVGAGNLGRALLNYNGFEKRGF----KIVAAFDVDPEKIGTKI-GGIPVYHIDELEEVVKENDIEIGILTVPAE 157 (213)
T ss_pred CCcEEEEECCCHHHHHHHHhhhcccCCc----EEEEEEECChhhcCCEe-CCeEEcCHHHHHHHHHHCCCCEEEEeCCch
Confidence 4568999999999999998643 4555 66654488876553221 23322 234455554 499999999988
Q ss_pred cHHHHHHHhc
Q 024016 83 VVKDVAMQIR 92 (274)
Q Consensus 83 ~~~~v~~~i~ 92 (274)
...++...+.
T Consensus 158 ~~~~i~~~l~ 167 (213)
T PRK05472 158 AAQEVADRLV 167 (213)
T ss_pred hHHHHHHHHH
Confidence 8777665543
No 243
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=97.63 E-value=0.00021 Score=56.22 Aligned_cols=65 Identities=20% Similarity=0.268 Sum_probs=50.0
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc---Cceec--cCchhhccCCCEEEEeeC
Q 024016 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI---GVKVL--SDNNAVVEYSDVVVFSVK 80 (274)
Q Consensus 11 ~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~---g~~~~--~~~~~~~~~aDiIil~v~ 80 (274)
|||+|||+ |..|+.+++-.++.|| +|+.+ -|++++...++.. ...+. ++..+.+.+-|+||.+..
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGH----eVTAi-vRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~ 71 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGH----EVTAI-VRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFG 71 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCC----eeEEE-EeChHhccccccceeecccccChhhhHhhhcCCceEEEecc
Confidence 69999987 9999999999999999 99999 8999987654221 11222 222356778899999983
No 244
>PRK06349 homoserine dehydrogenase; Provisional
Probab=97.62 E-value=0.00011 Score=66.71 Aligned_cols=91 Identities=18% Similarity=0.309 Sum_probs=57.9
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCC--------CCCCCcE-EEEeCCCHHHHHHHHHcCceeccCchhhcc--CCCEEE
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSG--------VLPPDRI-CTAVHSNLKRRDAFESIGVKVLSDNNAVVE--YSDVVV 76 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g--------~~~~~~v-~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~aDiIi 76 (274)
|+++|||+||+|.+|+.+++.|.++. . ..+| .++ +|++++.+.+...+..+.++..+++. +.|+|+
T Consensus 1 m~~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~--~i~l~~V~-~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVv 77 (426)
T PRK06349 1 MKPLKVGLLGLGTVGSGVVRILEENAEEIAARAGR--PIEIKKVA-VRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVV 77 (426)
T ss_pred CCeEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCC--CEEEEEEE-eCChhhccCCCCcccceeCCHHHHhhCCCCCEEE
Confidence 34579999999999999998876542 1 1133 456 88877654322234456677778775 479999
Q ss_pred EeeCccc-HHHHHHHhccccCCCCEEEEe
Q 024016 77 FSVKPQV-VKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 77 l~v~~~~-~~~v~~~i~~~l~~~~~vis~ 104 (274)
.|+++.. ..+.+. ..+..|+-||+.
T Consensus 78 e~tg~~~~~~~~~~---~aL~~GkhVVta 103 (426)
T PRK06349 78 ELMGGIEPARELIL---KALEAGKHVVTA 103 (426)
T ss_pred ECCCCchHHHHHHH---HHHHCCCeEEEc
Confidence 9986532 233332 334566667754
No 245
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=97.61 E-value=0.00071 Score=62.04 Aligned_cols=89 Identities=15% Similarity=0.187 Sum_probs=62.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc--Ccee-ccCc---h----hhccCCCEEEEe
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI--GVKV-LSDN---N----AVVEYSDVVVFS 78 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~--g~~~-~~~~---~----~~~~~aDiIil~ 78 (274)
.+++|.|+|+|.+|..+++.|.+.|+ +|+++ ++++++.+.+.+. +..+ ..|. . ..++++|.|+++
T Consensus 230 ~~~~iiIiG~G~~g~~l~~~L~~~~~----~v~vi-d~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~ 304 (453)
T PRK09496 230 PVKRVMIVGGGNIGYYLAKLLEKEGY----SVKLI-ERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIAL 304 (453)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC----eEEEE-ECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEEC
Confidence 35789999999999999999999998 99999 9999998888763 4432 2221 1 225689999988
Q ss_pred eCcccHHHHHHHhccccCCCCEEE
Q 024016 79 VKPQVVKDVAMQIRPLLSRKKLLV 102 (274)
Q Consensus 79 v~~~~~~~v~~~i~~~l~~~~~vi 102 (274)
++++...-++..+...+.+..+++
T Consensus 305 ~~~~~~n~~~~~~~~~~~~~~ii~ 328 (453)
T PRK09496 305 TNDDEANILSSLLAKRLGAKKVIA 328 (453)
T ss_pred CCCcHHHHHHHHHHHHhCCCeEEE
Confidence 886654433333333344444444
No 246
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.60 E-value=0.00018 Score=65.39 Aligned_cols=67 Identities=24% Similarity=0.233 Sum_probs=46.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK 80 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~ 80 (274)
..++|.|||.|.+|.++|+.|.+.|+ +|+++ |+++...+.....+-....+.....+++|+||.+.+
T Consensus 2 ~~~~i~iiGlG~~G~slA~~l~~~G~----~V~g~-D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~g 68 (418)
T PRK00683 2 GLQRVVVLGLGVTGKSIARFLAQKGV----YVIGV-DKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPG 68 (418)
T ss_pred CCCeEEEEEECHHHHHHHHHHHHCCC----EEEEE-eCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCC
Confidence 45689999999999999999999998 89999 987654332111110111233333467999998874
No 247
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=97.60 E-value=0.00033 Score=60.38 Aligned_cols=96 Identities=22% Similarity=0.345 Sum_probs=63.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHH----HHHH------cCceecc-CchhhccCCCEEEEee
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD----AFES------IGVKVLS-DNNAVVEYSDVVVFSV 79 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~----~l~~------~g~~~~~-~~~~~~~~aDiIil~v 79 (274)
+||+|||+|++|++++..|...+. ..++.++ |+++++++ +|.. ....+.. ...+.++++|+|+++-
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~--~~el~Li-Di~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitA 77 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGL--GSELVLI-DINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITA 77 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccc--cceEEEE-EcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEeC
Confidence 589999999999999999987776 2389999 99855432 2221 1233333 2356689999999986
Q ss_pred --C--ccc------------HHHHHHHhccccCCCCEEEEecCCCCH
Q 024016 80 --K--PQV------------VKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (274)
Q Consensus 80 --~--~~~------------~~~v~~~i~~~l~~~~~vis~~~g~~~ 110 (274)
| |.. ++++.+++...- ++.+++-.++++..
T Consensus 78 G~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~-~d~ivlVvtNPvD~ 123 (313)
T COG0039 78 GVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYA-PDAIVLVVTNPVDI 123 (313)
T ss_pred CCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhC-CCeEEEEecCcHHH
Confidence 2 431 333334455543 56677767777654
No 248
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=97.60 E-value=0.00047 Score=63.54 Aligned_cols=92 Identities=14% Similarity=0.186 Sum_probs=65.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCcee-ccC------------------------
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-LSD------------------------ 64 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~-~~~------------------------ 64 (274)
..|+.|+|+|.+|...+..+...|. .|+++ ++++++.+.+...|... .-+
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA----~V~v~-d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~ 238 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGA----IVRAF-DTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEM 238 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHH
Confidence 3699999999999999999988887 89999 99999888777766543 111
Q ss_pred --chhhccCCCEEEEee--CcccHHH-HHHHhccccCCCCEEEEecC
Q 024016 65 --NNAVVEYSDVVVFSV--KPQVVKD-VAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 65 --~~~~~~~aDiIil~v--~~~~~~~-v~~~i~~~l~~~~~vis~~~ 106 (274)
..+.++++|+||.|+ |-...+. +.++....+++|.+||+++.
T Consensus 239 ~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA~ 285 (511)
T TIGR00561 239 ELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLAA 285 (511)
T ss_pred HHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEeee
Confidence 123467899999998 2111111 22334455789999998753
No 249
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.58 E-value=0.00027 Score=61.76 Aligned_cols=98 Identities=14% Similarity=0.177 Sum_probs=64.1
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCC---CCcEEEEeCCCH--HHHHHH----HH------cCceeccCchhhccCCCE
Q 024016 11 FILGFIGA-GKMAESIAKGVAKSGVLP---PDRICTAVHSNL--KRRDAF----ES------IGVKVLSDNNAVVEYSDV 74 (274)
Q Consensus 11 ~~IgiIG~-G~mG~~~a~~L~~~g~~~---~~~v~v~~~r~~--~~~~~l----~~------~g~~~~~~~~~~~~~aDi 74 (274)
.||+|||+ |++|+.++..|...+... ..++.++ |+++ ++++-. .. .+..+..+..+.+++||+
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~-Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDi 79 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLL-DIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDV 79 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEE-ecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCE
Confidence 48999999 999999999999877632 1148899 9886 443211 11 123333456678999999
Q ss_pred EEEee--C--cc-c-----------HHHHHHHhccccCCCCEEEEecCCCC
Q 024016 75 VVFSV--K--PQ-V-----------VKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 75 Iil~v--~--~~-~-----------~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
|+++- | |. . ++++..++.++-+|+.++|-.++++.
T Consensus 80 VVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD 130 (323)
T cd00704 80 AILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPAN 130 (323)
T ss_pred EEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcHH
Confidence 99875 2 22 1 34444556555446667776777665
No 250
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=97.57 E-value=0.00029 Score=60.19 Aligned_cols=93 Identities=17% Similarity=0.252 Sum_probs=63.9
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-c---Cc--eeccC-chhhccCCCEEEEee
Q 024016 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-I---GV--KVLSD-NNAVVEYSDVVVFSV 79 (274)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~---g~--~~~~~-~~~~~~~aDiIil~v 79 (274)
.....++.|+|+|-.+.+++..|++.|. .+|+++ ||+.+++++|++ . +. ..... ..+...++|+||=||
T Consensus 123 ~~~~~~vlilGAGGAarAv~~aL~~~g~---~~i~V~-NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaT 198 (283)
T COG0169 123 DVTGKRVLILGAGGAARAVAFALAEAGA---KRITVV-NRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINAT 198 (283)
T ss_pred ccCCCEEEEECCcHHHHHHHHHHHHcCC---CEEEEE-eCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECC
Confidence 3345789999999999999999999995 389999 999999999887 2 21 11111 112122689999999
Q ss_pred CcccHHH----HHHHhccccCCCCEEEEec
Q 024016 80 KPQVVKD----VAMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 80 ~~~~~~~----v~~~i~~~l~~~~~vis~~ 105 (274)
|...... .+. ...++++.++.++.
T Consensus 199 p~Gm~~~~~~~~~~--~~~l~~~~~v~D~v 226 (283)
T COG0169 199 PVGMAGPEGDSPVP--AELLPKGAIVYDVV 226 (283)
T ss_pred CCCCCCCCCCCCCc--HHhcCcCCEEEEec
Confidence 8653221 111 23456777777764
No 251
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=97.56 E-value=0.00025 Score=62.25 Aligned_cols=94 Identities=13% Similarity=0.255 Sum_probs=59.8
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHH-HHHHcC--ceecc-CchhhccCCCEEEEeeCccc
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD-AFESIG--VKVLS-DNNAVVEYSDVVVFSVKPQV 83 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~-~l~~~g--~~~~~-~~~~~~~~aDiIil~v~~~~ 83 (274)
+++||+|+|+ |..|.-+.+.|.+.+| +..++... . +.+++. .+.-.| ..+.. +..+ ++++|++|+|+|+..
T Consensus 3 ~~~~IaIvGATG~vG~eLlrlL~~~~h-P~~~l~~v-~-s~~~aG~~l~~~~~~l~~~~~~~~~-~~~vD~vFla~p~~~ 78 (336)
T PRK05671 3 QPLDIAVVGATGTVGEALVQILEERDF-PVGTLHLL-A-SSESAGHSVPFAGKNLRVREVDSFD-FSQVQLAFFAAGAAV 78 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhhCCC-CceEEEEE-E-CcccCCCeeccCCcceEEeeCChHH-hcCCCEEEEcCCHHH
Confidence 4579999997 9999999999997776 33344444 2 222221 111112 22211 2223 478999999999877
Q ss_pred HHHHHHHhccccCCCCEEEEecCCCC
Q 024016 84 VKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 84 ~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
..++...+. ..|..+|+.++...
T Consensus 79 s~~~v~~~~---~~G~~VIDlS~~fR 101 (336)
T PRK05671 79 SRSFAEKAR---AAGCSVIDLSGALP 101 (336)
T ss_pred HHHHHHHHH---HCCCeEEECchhhc
Confidence 777666654 35778998876653
No 252
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=97.56 E-value=0.0006 Score=65.02 Aligned_cols=87 Identities=11% Similarity=0.224 Sum_probs=63.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceec-cCc--hh-----hccCCCEEEEeeCc
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-SDN--NA-----VVEYSDVVVFSVKP 81 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~-~~~--~~-----~~~~aDiIil~v~~ 81 (274)
..+|-|+|+|++|..+++.|.++|+ ++++. |.++++.+.+.+.|..+. .|. .+ -++++|.+++++++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~----~vvvI-D~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d 474 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGV----KMTVL-DHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDD 474 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCC----CEEEE-ECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCC
Confidence 3589999999999999999999998 99999 999999999988776542 221 12 24589999999976
Q ss_pred ccHH-HHHHHhccccCCCCEEE
Q 024016 82 QVVK-DVAMQIRPLLSRKKLLV 102 (274)
Q Consensus 82 ~~~~-~v~~~i~~~l~~~~~vi 102 (274)
+... .++..++.. .|+..++
T Consensus 475 ~~~n~~i~~~ar~~-~p~~~ii 495 (621)
T PRK03562 475 PQTSLQLVELVKEH-FPHLQII 495 (621)
T ss_pred HHHHHHHHHHHHHh-CCCCeEE
Confidence 5533 333333333 3443444
No 253
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=97.56 E-value=0.00052 Score=55.95 Aligned_cols=34 Identities=26% Similarity=0.324 Sum_probs=30.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~ 47 (274)
..||.|||+|.+|+.++++|...|. .+++++ |++
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~Gv---~~i~lv-D~d 54 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAGV---GTIVIV-DDD 54 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCC---CeEEEe-cCC
Confidence 4689999999999999999999996 378888 776
No 254
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.55 E-value=0.00027 Score=60.31 Aligned_cols=74 Identities=19% Similarity=0.272 Sum_probs=57.0
Q ss_pred CCCCCCeEEEEcccH-HHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCc-cc
Q 024016 6 IPAESFILGFIGAGK-MAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP-QV 83 (274)
Q Consensus 6 ~~~~~~~IgiIG~G~-mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~-~~ 83 (274)
...+.++|.|||.|. +|.+++..|.+.|. .|+++ ++.. .+..+.+++||+||.+++. ..
T Consensus 154 i~l~Gk~vvVIGrs~~VG~pla~lL~~~ga----tVtv~-~s~t--------------~~l~~~~~~ADIVIsAvg~p~~ 214 (286)
T PRK14175 154 IDLEGKNAVVIGRSHIVGQPVSKLLLQKNA----SVTIL-HSRS--------------KDMASYLKDADVIVSAVGKPGL 214 (286)
T ss_pred CCCCCCEEEEECCCchhHHHHHHHHHHCCC----eEEEE-eCCc--------------hhHHHHHhhCCEEEECCCCCcc
Confidence 345678999999988 99999999999987 99999 6542 2445678899999999964 33
Q ss_pred HHHHHHHhccccCCCCEEEEe
Q 024016 84 VKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 84 ~~~v~~~i~~~l~~~~~vis~ 104 (274)
+.. ..+++|.+||++
T Consensus 215 i~~------~~vk~gavVIDv 229 (286)
T PRK14175 215 VTK------DVVKEGAVIIDV 229 (286)
T ss_pred cCH------HHcCCCcEEEEc
Confidence 221 135788898886
No 255
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=97.55 E-value=0.00017 Score=51.41 Aligned_cols=78 Identities=15% Similarity=0.238 Sum_probs=56.4
Q ss_pred CCeEEEEcccHHHHHHHHHHH-hCCCCCCCcE-EEEeCCCHHHHHHHHHcCceeccCchhhccC--CCEEEEeeCcccHH
Q 024016 10 SFILGFIGAGKMAESIAKGVA-KSGVLPPDRI-CTAVHSNLKRRDAFESIGVKVLSDNNAVVEY--SDVVVFSVKPQVVK 85 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~-~~g~~~~~~v-~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~--aDiIil~v~~~~~~ 85 (274)
..++.++|+|++|.+++..+. ..|+ .+ .++ +.++++.-.-. .|+.+..+..++.+. .|+-++|+|+...+
T Consensus 3 ~~~v~ivGag~~G~a~~~~~~~~~g~----~i~~~~-dv~~~~~G~~i-~gipV~~~~~~l~~~~~i~iaii~VP~~~a~ 76 (96)
T PF02629_consen 3 KTNVIIVGAGNLGRALLYNGFSMRGF----GIVAVF-DVDPEKIGKEI-GGIPVYGSMDELEEFIEIDIAIITVPAEAAQ 76 (96)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHHCE----CEEEEE-EECTTTTTSEE-TTEEEESSHHHHHHHCTTSEEEEES-HHHHH
T ss_pred CCeEEEECCCCcHHHHHHhHHHHcCC----CCEEEE-EcCCCccCcEE-CCEEeeccHHHhhhhhCCCEEEEEcCHHHHH
Confidence 458999999999999875554 4565 44 455 88887543111 477777677766655 99999999999999
Q ss_pred HHHHHhcc
Q 024016 86 DVAMQIRP 93 (274)
Q Consensus 86 ~v~~~i~~ 93 (274)
++..++..
T Consensus 77 ~~~~~~~~ 84 (96)
T PF02629_consen 77 EVADELVE 84 (96)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887654
No 256
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=97.52 E-value=0.00037 Score=60.59 Aligned_cols=95 Identities=16% Similarity=0.233 Sum_probs=63.1
Q ss_pred eEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHH--HHHHH--cCceec--c-C--chhhccCCCEEEEeeC-
Q 024016 12 ILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRR--DAFES--IGVKVL--S-D--NNAVVEYSDVVVFSVK- 80 (274)
Q Consensus 12 ~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~--~~l~~--~g~~~~--~-~--~~~~~~~aDiIil~v~- 80 (274)
||+|||+ |++|++++..|...++. .++.++ |+++... -+|.. ....+. . + ..+.+++||+||++.-
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~--~elvL~-Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~ 77 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYV--SELSLY-DIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGV 77 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCC--cEEEEe-cCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCC
Confidence 7999999 99999999999888763 378999 9876221 12222 112222 1 2 2578899999999862
Q ss_pred ---cc------------cHHHHHHHhccccCCCCEEEEecCCCCH
Q 024016 81 ---PQ------------VVKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (274)
Q Consensus 81 ---~~------------~~~~v~~~i~~~l~~~~~vis~~~g~~~ 110 (274)
|. .++++.+.+..+ .|+.+++..+++...
T Consensus 78 ~~~~g~~R~dll~~N~~I~~~i~~~i~~~-~p~~iiivvsNPvDv 121 (312)
T TIGR01772 78 PRKPGMTRDDLFNVNAGIVKDLVAAVAES-CPKAMILVITNPVNS 121 (312)
T ss_pred CCCCCccHHHHHHHhHHHHHHHHHHHHHh-CCCeEEEEecCchhh
Confidence 21 133344445555 577888888888763
No 257
>COG4074 Mth H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=97.52 E-value=0.0064 Score=49.29 Aligned_cols=166 Identities=14% Similarity=0.213 Sum_probs=99.9
Q ss_pred CceeccCchhhccCCCEEEEeeCccc-HHHHHHHhccccCCCCEEEEecCCCCHHHHHHhhC-----CCceEEEcCCcHH
Q 024016 58 GVKVLSDNNAVVEYSDVVVFSVKPQV-VKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-----HSRFIRVMPNTPS 131 (274)
Q Consensus 58 g~~~~~~~~~~~~~aDiIil~v~~~~-~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~-----~~~~~~~~p~~~~ 131 (274)
|+.+.++..|+++++|+|+.=+|-.. -.++++++.+.+++|.+|-+. ..++...+.+.+. +-.+.+.||....
T Consensus 126 g~~vttddreavedad~iitwlpkg~~qpdiikkfiddipegaivtha-ctipttkf~kifed~gredlnvtsyhpg~vp 204 (343)
T COG4074 126 GIVVTTDDREAVEDADMIITWLPKGGVQPDIIKKFIDDIPEGAIVTHA-CTIPTTKFKKIFEDMGREDLNVTSYHPGTVP 204 (343)
T ss_pred eeEEecCcHhhhcCCCeEEEeccCCCCCccHHHHHHhcCCCCceEeee-cccchHHHHHHHHHhCccccceeccCCCCCc
Confidence 55667788899999999999987543 456777777778888776654 5566666555443 3457777886533
Q ss_pred hhcCCceEEecCCCCCHHHHHHHHHHhhh-cCCeEEcCccchhhHHHhhcchHHHHHHHHHHHHHHHH-HcCCCHHHHHH
Q 024016 132 AVGEAATVMSLGGTATEEDGELIGKLFGS-VGKIWRADEKLFDAITGLSGSGPAYIFLAIEALADGGV-AAGLPRELALG 209 (274)
Q Consensus 132 ~~~~g~~~i~~~~~~~~~~~~~v~~ll~~-~g~~~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~~~-~~Gl~~~~~~~ 209 (274)
+ .+|...+.-| -.++++++.+.++=+. -|..+.+....+...+-+++...+.++.-+-..-++.. -.|-+.+-+..
T Consensus 205 e-mkgqvyiaeg-yaseeavn~lyelg~karg~afk~pa~llgpvcdmcsavtaivyagll~yrdavt~ilgapadfaqm 282 (343)
T COG4074 205 E-MKGQVYIAEG-YASEEAVNALYELGEKARGLAFKVPAYLLGPVCDMCSAVTAIVYAGLLTYRDAVTDILGAPADFAQM 282 (343)
T ss_pred c-ccCcEEEecc-cccHHHHHHHHHHHHHhhcccccCcHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHH
Confidence 2 2344444433 2467777777776543 34457777777766666655444433322223333322 36666665555
Q ss_pred HHHHHHHHHHHHHHhcC
Q 024016 210 LASQTVLGAASMVTKSG 226 (274)
Q Consensus 210 ~~~~~~~~~~~~~~~~~ 226 (274)
+..+.+.....++++.|
T Consensus 283 ma~eal~qi~~lmee~g 299 (343)
T COG4074 283 MAVEALQQIAKLMEEEG 299 (343)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 55566666666655433
No 258
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=97.47 E-value=0.00069 Score=59.65 Aligned_cols=79 Identities=13% Similarity=0.252 Sum_probs=54.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH---------------------HHHHH----HHH--cCcee-
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL---------------------KRRDA----FES--IGVKV- 61 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~---------------------~~~~~----l~~--~g~~~- 61 (274)
..+|.|||+|.+|+.++..|...|+ .+++++ |++. .|++. +.+ .++.+
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGv---g~i~lv-D~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~ 99 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGI---GKLTIA-DRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIV 99 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCC---CEEEEE-cCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEE
Confidence 4689999999999999999999997 368888 7763 12222 222 23322
Q ss_pred -c------cCchhhccCCCEEEEeeCcccHHHHHHHhc
Q 024016 62 -L------SDNNAVVEYSDVVVFSVKPQVVKDVAMQIR 92 (274)
Q Consensus 62 -~------~~~~~~~~~aDiIil~v~~~~~~~v~~~i~ 92 (274)
. .+..++++++|+||.|+.....+.++.++.
T Consensus 100 ~~~~~~~~~~~~~~~~~~DlVid~~D~~~~r~~in~~~ 137 (338)
T PRK12475 100 PVVTDVTVEELEELVKEVDLIIDATDNFDTRLLINDLS 137 (338)
T ss_pred EEeccCCHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHH
Confidence 1 123456788999999997766666666554
No 259
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=97.47 E-value=0.00042 Score=59.50 Aligned_cols=106 Identities=15% Similarity=0.218 Sum_probs=74.4
Q ss_pred CCCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-ccc
Q 024016 5 PIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQV 83 (274)
Q Consensus 5 ~~~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~ 83 (274)
.+....+++||||+|++|+-.+.++..-|- .+..| |.-. ..+.+...|++.. +.+|++..||+|-+=+| ...
T Consensus 141 G~el~GKTLgvlG~GrIGseVA~r~k~~gm----~vI~~-dpi~-~~~~~~a~gvq~v-sl~Eil~~ADFitlH~PLtP~ 213 (406)
T KOG0068|consen 141 GWELRGKTLGVLGLGRIGSEVAVRAKAMGM----HVIGY-DPIT-PMALAEAFGVQLV-SLEEILPKADFITLHVPLTPS 213 (406)
T ss_pred eeEEeccEEEEeecccchHHHHHHHHhcCc----eEEee-cCCC-chHHHHhccceee-eHHHHHhhcCEEEEccCCCcc
Confidence 344455899999999999999999988887 77777 5422 2234455788875 67899999999998887 344
Q ss_pred HHHHH-HHhccccCCCCEEEEecCC--CCHHHHHHhh
Q 024016 84 VKDVA-MQIRPLLSRKKLLVSVAAG--VKLKDLQEWT 117 (274)
Q Consensus 84 ~~~v~-~~i~~~l~~~~~vis~~~g--~~~~~l~~~~ 117 (274)
.+.++ ++-...+++|..||.++-| +....+-+.+
T Consensus 214 T~~lin~~tfA~mKkGVriIN~aRGGvVDe~ALv~Al 250 (406)
T KOG0068|consen 214 TEKLLNDETFAKMKKGVRIINVARGGVVDEPALVRAL 250 (406)
T ss_pred hhhccCHHHHHHhhCCcEEEEecCCceechHHHHHHH
Confidence 55555 3344457899999988744 2334444444
No 260
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=97.46 E-value=0.0012 Score=52.60 Aligned_cols=33 Identities=30% Similarity=0.462 Sum_probs=28.5
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024016 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (274)
Q Consensus 12 ~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~ 48 (274)
||.|||+|.+|+.++..|...|. .+++++ |.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gv---g~i~lv-D~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGV---GNLKLV-DFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCC---CeEEEE-eCCE
Confidence 68999999999999999999997 258888 6654
No 261
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=97.46 E-value=0.00052 Score=59.40 Aligned_cols=91 Identities=20% Similarity=0.285 Sum_probs=61.8
Q ss_pred EEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHH----HH------cCceeccCchhhccCCCEEEEeeC----
Q 024016 15 FIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF----ES------IGVKVLSDNNAVVEYSDVVVFSVK---- 80 (274)
Q Consensus 15 iIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l----~~------~g~~~~~~~~~~~~~aDiIil~v~---- 80 (274)
|||+|++|++++..|...+.. .++.++ |+++++++.. .. ..+++..+..+.+++||+|+++.-
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~--~el~L~-Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVitag~~rk 77 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIA--DEIVLI-DINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAGAPQK 77 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCC--CEEEEE-eCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECCCCCCC
Confidence 699999999999999988863 379999 9877654322 22 123444455677899999999862
Q ss_pred ccc------------HHHHHHHhccccCCCCEEEEecCCCC
Q 024016 81 PQV------------VKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 81 ~~~------------~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
|.. ++++...+..+ .|+.+++..+++..
T Consensus 78 ~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvsNP~d 117 (299)
T TIGR01771 78 PGETRLELVGRNVRIMKSIVPEVVKS-GFDGIFLVATNPVD 117 (299)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEeCCHHH
Confidence 221 33444555554 56777777776654
No 262
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=97.46 E-value=0.00054 Score=60.71 Aligned_cols=92 Identities=15% Similarity=0.239 Sum_probs=58.9
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHH-HHH---c-----------CceeccCchhhccCC
Q 024016 9 ESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA-FES---I-----------GVKVLSDNNAVVEYS 72 (274)
Q Consensus 9 ~~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~-l~~---~-----------g~~~~~~~~~~~~~a 72 (274)
.++||+|+| .|.+|..+.+.|.+... .++..+ .+++++..+ +.. . ...+.....+.+.++
T Consensus 2 ~~~~V~I~GatG~iG~~l~~~L~~~p~---~el~~~-~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 77 (349)
T PRK08664 2 MKLKVGILGATGMVGQRFVQLLANHPW---FEVTAL-AASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPEAVDDV 77 (349)
T ss_pred CCcEEEEECCCCHHHHHHHHHHHcCCC---ceEEEE-EcChhhcCCcccccccccccccccccccceEEEeCCHHHhcCC
Confidence 357999998 89999999999986543 266665 455433221 110 0 112212223345789
Q ss_pred CEEEEeeCcccHHHHHHHhccccCCCCEEEEecCC
Q 024016 73 DVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAG 107 (274)
Q Consensus 73 DiIil~v~~~~~~~v~~~i~~~l~~~~~vis~~~g 107 (274)
|+||+|+|.+...++.+.+. ..|..+|+.++.
T Consensus 78 DvVf~a~p~~~s~~~~~~~~---~~G~~vIDls~~ 109 (349)
T PRK08664 78 DIVFSALPSDVAGEVEEEFA---KAGKPVFSNASA 109 (349)
T ss_pred CEEEEeCChhHHHHHHHHHH---HCCCEEEECCch
Confidence 99999999987777766553 356778877654
No 263
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=97.45 E-value=0.00037 Score=61.34 Aligned_cols=93 Identities=16% Similarity=0.221 Sum_probs=61.3
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcC--ceeccCchhhccCCCEEEEeeCcccHHHH
Q 024016 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIG--VKVLSDNNAVVEYSDVVVFSVKPQVVKDV 87 (274)
Q Consensus 11 ~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g--~~~~~~~~~~~~~aDiIil~v~~~~~~~v 87 (274)
+||+|||+ |..|..+.+.|.+.+| +..++... .+..+.-+.+.-.+ +.+.+...+.++++|+||+|+|.....++
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~h-p~~~l~~l-~s~~~~g~~l~~~g~~i~v~d~~~~~~~~vDvVf~A~g~g~s~~~ 79 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNF-PVDKLRLL-ASARSAGKELSFKGKELKVEDLTTFDFSGVDIALFSAGGSVSKKY 79 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC-CcceEEEE-EccccCCCeeeeCCceeEEeeCCHHHHcCCCEEEECCChHHHHHH
Confidence 68999986 9999999999999887 33345555 44433322222112 22221112334789999999999888888
Q ss_pred HHHhccccCCCCEEEEecCCC
Q 024016 88 AMQIRPLLSRKKLLVSVAAGV 108 (274)
Q Consensus 88 ~~~i~~~l~~~~~vis~~~g~ 108 (274)
...+. ..|..||+.++..
T Consensus 80 ~~~~~---~~G~~VIDlS~~~ 97 (334)
T PRK14874 80 APKAA---AAGAVVIDNSSAF 97 (334)
T ss_pred HHHHH---hCCCEEEECCchh
Confidence 77654 3567888876643
No 264
>PLN00106 malate dehydrogenase
Probab=97.43 E-value=0.00079 Score=58.80 Aligned_cols=96 Identities=10% Similarity=0.170 Sum_probs=62.0
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHH--HHHHH--cCceec-----cCchhhccCCCEEEEee
Q 024016 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRR--DAFES--IGVKVL-----SDNNAVVEYSDVVVFSV 79 (274)
Q Consensus 10 ~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~--~~l~~--~g~~~~-----~~~~~~~~~aDiIil~v 79 (274)
..||+|||+ |++|+.++..|...+.. .++.++ |+++... .++.. ....+. ++..+.++++|+||++-
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~--~el~L~-Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitA 94 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKMNPLV--SELHLY-DIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPA 94 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCC--CEEEEE-ecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeC
Confidence 369999999 99999999999877763 279999 9876221 12222 111221 22367789999999986
Q ss_pred --C--cc-cHH-----------HHHHHhccccCCCCEEEEecCCCC
Q 024016 80 --K--PQ-VVK-----------DVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 80 --~--~~-~~~-----------~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
| |. .-. ++.+.+..+ .|+.+++..+++..
T Consensus 95 G~~~~~g~~R~dll~~N~~i~~~i~~~i~~~-~p~aivivvSNPvD 139 (323)
T PLN00106 95 GVPRKPGMTRDDLFNINAGIVKTLCEAVAKH-CPNALVNIISNPVN 139 (323)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEeCCCcc
Confidence 2 22 122 223334443 47778888888875
No 265
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=97.42 E-value=0.001 Score=58.00 Aligned_cols=86 Identities=15% Similarity=0.271 Sum_probs=61.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceec-c-Cchhhcc----CCCEEEEeeCccc
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-S-DNNAVVE----YSDVVVFSVKPQV 83 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~-~-~~~~~~~----~aDiIil~v~~~~ 83 (274)
..+|+|+|+|-+|..-.+.....|. +|+++ +|++++.+.++++|+... + +..+..+ .+|+|+.++++..
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~ga----~Via~-~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~~~~ 241 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMGA----EVIAI-TRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVGPAT 241 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCC----eEEEE-eCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCChhh
Confidence 3689999999999977776666887 99999 999999998888886422 2 1122222 3999999999656
Q ss_pred HHHHHHHhccccCCCCEEEEe
Q 024016 84 VKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 84 ~~~v~~~i~~~l~~~~~vis~ 104 (274)
+...++-+ +++-.++.+
T Consensus 242 ~~~~l~~l----~~~G~~v~v 258 (339)
T COG1064 242 LEPSLKAL----RRGGTLVLV 258 (339)
T ss_pred HHHHHHHH----hcCCEEEEE
Confidence 66666544 444455544
No 266
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=97.40 E-value=0.00063 Score=58.93 Aligned_cols=102 Identities=16% Similarity=0.283 Sum_probs=65.2
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-----cCc---eec-cCchhh-ccCCCEEEEe
Q 024016 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----IGV---KVL-SDNNAV-VEYSDVVVFS 78 (274)
Q Consensus 10 ~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-----~g~---~~~-~~~~~~-~~~aDiIil~ 78 (274)
++||+|||. |--|.-+.+.|..+.++ ++..+ ..+..+-+.+.+ .|. ... -++.+. .++||+||+|
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~Hp~v---e~~~~-ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~DvvFla 77 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGHPDV---ELILI-SSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIELDECDVVFLA 77 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhcCCCe---EEEEe-echhhcCCchHHhCcccccccccccccCChhhhhcccCCEEEEe
Confidence 579999986 99999999888766542 56555 433322223332 121 111 122232 4469999999
Q ss_pred eCcccHHHHHHHhccccCCCCEEEEecCCCCH---HHHHHhhC
Q 024016 79 VKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKL---KDLQEWTG 118 (274)
Q Consensus 79 v~~~~~~~v~~~i~~~l~~~~~vis~~~g~~~---~~l~~~~~ 118 (274)
+|...-.+++.++. .++..||++++.... +..++|++
T Consensus 78 lPhg~s~~~v~~l~---~~g~~VIDLSadfR~~d~~~ye~~Yg 117 (349)
T COG0002 78 LPHGVSAELVPELL---EAGCKVIDLSADFRLKDPEVYEKWYG 117 (349)
T ss_pred cCchhHHHHHHHHH---hCCCeEEECCcccccCCHHHHHHhhC
Confidence 99999888887765 356679999877654 34455554
No 267
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.38 E-value=0.002 Score=55.73 Aligned_cols=102 Identities=19% Similarity=0.300 Sum_probs=69.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhC---CCCCCCcEEEEeCCCHHHHHHHHH-cCc---eeccCchhhccCC--CEEEEeeC
Q 024016 10 SFILGFIGAGKMAESIAKGVAKS---GVLPPDRICTAVHSNLKRRDAFES-IGV---KVLSDNNAVVEYS--DVVVFSVK 80 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~---g~~~~~~v~v~~~r~~~~~~~l~~-~g~---~~~~~~~~~~~~a--DiIil~v~ 80 (274)
..|+||+|+|.|++-.++.|... +| .|+..++|+.+++..+++ .++ ++..+.++++++. |+|.+++|
T Consensus 6 ~ir~Gi~g~g~ia~~f~~al~~~p~s~~----~Ivava~~s~~~A~~fAq~~~~~~~k~y~syEeLakd~~vDvVyi~~~ 81 (351)
T KOG2741|consen 6 TIRWGIVGAGRIARDFVRALHTLPESNH----QIVAVADPSLERAKEFAQRHNIPNPKAYGSYEELAKDPEVDVVYISTP 81 (351)
T ss_pred eeEEEEeehhHHHHHHHHHhccCcccCc----EEEEEecccHHHHHHHHHhcCCCCCccccCHHHHhcCCCcCEEEeCCC
Confidence 46899999999999999988643 34 665555999999988887 454 6778888988864 99999998
Q ss_pred cccHHHHHHHhccccCCCCEEEEecCCCCHHHHHHhh
Q 024016 81 PQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWT 117 (274)
Q Consensus 81 ~~~~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~ 117 (274)
..+..+++..+... ...+++.---.++.++..+.+
T Consensus 82 ~~qH~evv~l~l~~--~K~VL~EKPla~n~~e~~~iv 116 (351)
T KOG2741|consen 82 NPQHYEVVMLALNK--GKHVLCEKPLAMNVAEAEEIV 116 (351)
T ss_pred CccHHHHHHHHHHc--CCcEEecccccCCHHHHHHHH
Confidence 65555555444322 223444322234444444443
No 268
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.38 E-value=0.00074 Score=59.17 Aligned_cols=98 Identities=15% Similarity=0.166 Sum_probs=61.8
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCC---CCcEEEEeCCCHH--HHHH----HHH------cCceeccCchhhccCCCE
Q 024016 11 FILGFIGA-GKMAESIAKGVAKSGVLP---PDRICTAVHSNLK--RRDA----FES------IGVKVLSDNNAVVEYSDV 74 (274)
Q Consensus 11 ~~IgiIG~-G~mG~~~a~~L~~~g~~~---~~~v~v~~~r~~~--~~~~----l~~------~g~~~~~~~~~~~~~aDi 74 (274)
.||+|+|+ |.+|+.++..|...+... ..+|.++ |+++. +++. +.. ..+....+..+.+++||+
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~-D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDi 81 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLL-DIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDV 81 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEE-EcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCE
Confidence 58999999 999999999999866431 2379999 88652 1211 110 012233454577899999
Q ss_pred EEEee--C--ccc------------HHHHHHHhccccCCCCEEEEecCCCC
Q 024016 75 VVFSV--K--PQV------------VKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 75 Iil~v--~--~~~------------~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
||++- + +.. ++++...+..+..++.++|-.++++.
T Consensus 82 VI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD 132 (325)
T cd01336 82 AILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPAN 132 (325)
T ss_pred EEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcHH
Confidence 99885 2 111 23444455555456667776767654
No 269
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=97.37 E-value=0.00088 Score=59.90 Aligned_cols=93 Identities=16% Similarity=0.179 Sum_probs=61.4
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcC-----cee--ccCch-hhccCCCEEEEee
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIG-----VKV--LSDNN-AVVEYSDVVVFSV 79 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g-----~~~--~~~~~-~~~~~aDiIil~v 79 (274)
+++||+|+|+ |..|..+.+-|.++.+ .+|+.+ .++.+.-+.+.... ... ..+.. +.++++|+||+|+
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~---~el~~l-~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Al 112 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPD---FEITVM-TADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCL 112 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCC---CeEEEE-EChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcC
Confidence 4579999988 9999999998887732 278877 55543322222211 111 11111 2247899999999
Q ss_pred CcccHHHHHHHhccccCCCCEEEEecCCCC
Q 024016 80 KPQVVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 80 ~~~~~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
|.....++...+ ..+..||++++...
T Consensus 113 p~~~s~~i~~~~----~~g~~VIDlSs~fR 138 (381)
T PLN02968 113 PHGTTQEIIKAL----PKDLKIVDLSADFR 138 (381)
T ss_pred CHHHHHHHHHHH----hCCCEEEEcCchhc
Confidence 998877777764 25678998876543
No 270
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=97.36 E-value=0.00097 Score=58.24 Aligned_cols=67 Identities=18% Similarity=0.261 Sum_probs=48.2
Q ss_pred EEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cC------------------ceeccCchhhccCCC
Q 024016 13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IG------------------VKVLSDNNAVVEYSD 73 (274)
Q Consensus 13 IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g------------------~~~~~~~~~~~~~aD 73 (274)
|||+|+|+||...++.+.+... -++...++.++++...+.. .| +.+..++.++..++|
T Consensus 1 VaInG~GrIGr~varav~~~~d---~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vD 77 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDD---MKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVD 77 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCC---cEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCC
Confidence 6999999999999999875422 2666554888776555443 22 233446778888999
Q ss_pred EEEEeeCcc
Q 024016 74 VVVFSVKPQ 82 (274)
Q Consensus 74 iIil~v~~~ 82 (274)
+|+.|+|..
T Consensus 78 iVve~Tp~~ 86 (333)
T TIGR01546 78 IVVDATPGG 86 (333)
T ss_pred EEEECCCCC
Confidence 999999754
No 271
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.35 E-value=0.00066 Score=57.90 Aligned_cols=74 Identities=20% Similarity=0.269 Sum_probs=56.7
Q ss_pred CCCCCeEEEEcccHH-HHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccHH
Q 024016 7 PAESFILGFIGAGKM-AESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVK 85 (274)
Q Consensus 7 ~~~~~~IgiIG~G~m-G~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~ 85 (274)
+...++|.|||.|.+ |.+++.-|.+.|. .|+++ ++.. .+..+.+++||+||.+++...+
T Consensus 155 ~l~Gk~vvViGrs~iVGkPla~lL~~~~a----tVt~~-hs~t--------------~~l~~~~~~ADIVV~avG~~~~- 214 (285)
T PRK14189 155 PLRGAHAVVIGRSNIVGKPMAMLLLQAGA----TVTIC-HSKT--------------RDLAAHTRQADIVVAAVGKRNV- 214 (285)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCC----EEEEe-cCCC--------------CCHHHHhhhCCEEEEcCCCcCc-
Confidence 345689999999998 9999999999987 89988 5431 2455778999999999973322
Q ss_pred HHHHHhccccCCCCEEEEe
Q 024016 86 DVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 86 ~v~~~i~~~l~~~~~vis~ 104 (274)
+.. ..+++|.+||++
T Consensus 215 --i~~--~~ik~gavVIDV 229 (285)
T PRK14189 215 --LTA--DMVKPGATVIDV 229 (285)
T ss_pred --cCH--HHcCCCCEEEEc
Confidence 211 457899999986
No 272
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=97.35 E-value=0.00057 Score=59.83 Aligned_cols=98 Identities=13% Similarity=0.117 Sum_probs=61.6
Q ss_pred eEEEEcc-cHHHHHHHHHHHhCCCCC--CC-cEEEEeCCCHHH--HHH----HHH------cCceeccCchhhccCCCEE
Q 024016 12 ILGFIGA-GKMAESIAKGVAKSGVLP--PD-RICTAVHSNLKR--RDA----FES------IGVKVLSDNNAVVEYSDVV 75 (274)
Q Consensus 12 ~IgiIG~-G~mG~~~a~~L~~~g~~~--~~-~v~v~~~r~~~~--~~~----l~~------~g~~~~~~~~~~~~~aDiI 75 (274)
||+|||+ |++|+.++..|...+... .+ ++.++ |+++.. ++. +.. ..+...++..+.+++||+|
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~Li-D~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiV 79 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLL-DIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVA 79 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEE-ecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEE
Confidence 6999999 999999999999877642 22 58899 985432 211 111 1122222446778999999
Q ss_pred EEee--C--ccc------------HHHHHHHhccccCCCCEEEEecCCCCH
Q 024016 76 VFSV--K--PQV------------VKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (274)
Q Consensus 76 il~v--~--~~~------------~~~v~~~i~~~l~~~~~vis~~~g~~~ 110 (274)
|++- | +.. ++++.++|..+-+|+.+++-.++++..
T Consensus 80 VitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPvDv 130 (324)
T TIGR01758 80 ILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPANT 130 (324)
T ss_pred EEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHH
Confidence 9975 2 122 333444555543466777777777653
No 273
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=97.35 E-value=0.0005 Score=61.78 Aligned_cols=75 Identities=23% Similarity=0.337 Sum_probs=52.9
Q ss_pred EEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc----Ccee----ccC---chhhccCCCEEEEeeCc
Q 024016 13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI----GVKV----LSD---NNAVVEYSDVVVFSVKP 81 (274)
Q Consensus 13 IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~----g~~~----~~~---~~~~~~~aDiIil~v~~ 81 (274)
|.|+|+|.+|+.+++.|.+.+- ..+|++. +|+.++++.+.+. .+.. ..+ ..++++++|+||-|++|
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~--~~~v~va-~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp 77 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGP--FEEVTVA-DRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGP 77 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTC--E-EEEEE-ESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSG
T ss_pred CEEEcCcHHHHHHHHHHhcCCC--CCcEEEE-ECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCcc
Confidence 7899999999999999998763 1268899 9999999888751 2221 122 34578899999999988
Q ss_pred ccHHHHHHH
Q 024016 82 QVVKDVAMQ 90 (274)
Q Consensus 82 ~~~~~v~~~ 90 (274)
..-..+++.
T Consensus 78 ~~~~~v~~~ 86 (386)
T PF03435_consen 78 FFGEPVARA 86 (386)
T ss_dssp GGHHHHHHH
T ss_pred chhHHHHHH
Confidence 765555543
No 274
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=97.33 E-value=0.0011 Score=47.95 Aligned_cols=76 Identities=9% Similarity=0.155 Sum_probs=51.6
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceec-cCchhhccCCCEEEEeeCcccHHH
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-SDNNAVVEYSDVVVFSVKPQVVKD 86 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~-~~~~~~~~~aDiIil~v~~~~~~~ 86 (274)
.+.++|.|||.|.+|..=++.|++.|. +|+++ .++.+..+ ..++.. ....+.++++|+||.|+.+..+.+
T Consensus 5 l~~~~vlVvGgG~va~~k~~~Ll~~gA----~v~vi-s~~~~~~~----~~i~~~~~~~~~~l~~~~lV~~at~d~~~n~ 75 (103)
T PF13241_consen 5 LKGKRVLVVGGGPVAARKARLLLEAGA----KVTVI-SPEIEFSE----GLIQLIRREFEEDLDGADLVFAATDDPELNE 75 (103)
T ss_dssp -TT-EEEEEEESHHHHHHHHHHCCCTB----EEEEE-ESSEHHHH----TSCEEEESS-GGGCTTESEEEE-SS-HHHHH
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCC----EEEEE-CCchhhhh----hHHHHHhhhHHHHHhhheEEEecCCCHHHHH
Confidence 356799999999999999999999998 99999 77751112 222221 223456788999999998777665
Q ss_pred HHHHhc
Q 024016 87 VAMQIR 92 (274)
Q Consensus 87 v~~~i~ 92 (274)
.+....
T Consensus 76 ~i~~~a 81 (103)
T PF13241_consen 76 AIYADA 81 (103)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554433
No 275
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=97.32 E-value=0.00085 Score=59.19 Aligned_cols=96 Identities=11% Similarity=0.177 Sum_probs=61.0
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEe-CCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccHHH
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAV-HSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKD 86 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~-~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~~ 86 (274)
+.+||+|||+ |..|..+.+.|.+.+| +..++.... .|+..+.-........+.....+.++++|+||+|+|.....+
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~h-P~~~l~~las~rsaGk~~~~~~~~~~v~~~~~~~~~~~D~vf~a~p~~~s~~ 84 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDF-PYSSLKMLASARSAGKKVTFEGRDYTVEELTEDSFDGVDIALFSAGGSISKK 84 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCC-CcceEEEEEccCCCCCeeeecCceeEEEeCCHHHHcCCCEEEECCCcHHHHH
Confidence 4579999986 9999999999988777 333454331 233222111111112222212244578999999999998888
Q ss_pred HHHHhccccCCCCEEEEecCCC
Q 024016 87 VAMQIRPLLSRKKLLVSVAAGV 108 (274)
Q Consensus 87 v~~~i~~~l~~~~~vis~~~g~ 108 (274)
+..++. ..|..||+.++..
T Consensus 85 ~~~~~~---~~g~~VIDlS~~f 103 (344)
T PLN02383 85 FGPIAV---DKGAVVVDNSSAF 103 (344)
T ss_pred HHHHHH---hCCCEEEECCchh
Confidence 777653 3678899887654
No 276
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.32 E-value=0.00087 Score=57.11 Aligned_cols=74 Identities=15% Similarity=0.270 Sum_probs=57.9
Q ss_pred CCCCCCeEEEEcccH-HHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-ccc
Q 024016 6 IPAESFILGFIGAGK-MAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQV 83 (274)
Q Consensus 6 ~~~~~~~IgiIG~G~-mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~ 83 (274)
.+...++|.|||-|+ +|.+++.-|.+.|. .|+++ ++.. .+..+.+++||+||.++. |..
T Consensus 155 i~l~Gk~vvViGrs~iVG~Pla~lL~~~~a----tVtv~-hs~T--------------~~l~~~~~~ADIvi~avG~p~~ 215 (285)
T PRK10792 155 IDTYGLNAVVVGASNIVGRPMSLELLLAGC----TVTVC-HRFT--------------KNLRHHVRNADLLVVAVGKPGF 215 (285)
T ss_pred CCCCCCEEEEECCCcccHHHHHHHHHHCCC----eEEEE-ECCC--------------CCHHHHHhhCCEEEEcCCCccc
Confidence 344568999999999 99999999998887 99998 6531 245677899999999994 554
Q ss_pred HHHHHHHhccccCCCCEEEEe
Q 024016 84 VKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 84 ~~~v~~~i~~~l~~~~~vis~ 104 (274)
+.. ..+++|.+||++
T Consensus 216 v~~------~~vk~gavVIDv 230 (285)
T PRK10792 216 IPG------EWIKPGAIVIDV 230 (285)
T ss_pred ccH------HHcCCCcEEEEc
Confidence 332 346899999986
No 277
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=97.30 E-value=0.00064 Score=57.86 Aligned_cols=91 Identities=20% Similarity=0.261 Sum_probs=68.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCcee---cc---CchhhccCCCEEEEee--C
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKV---LS---DNNAVVEYSDVVVFSV--K 80 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~---~~---~~~~~~~~aDiIil~v--~ 80 (274)
.-||.|||.|..|..=|+-..--|- +|++. ++|.+|++.+.. ++.++ .+ +.++.+.++|+||=+| |
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA----~Vtil-d~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIp 242 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGA----DVTIL-DLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIP 242 (371)
T ss_pred CccEEEECCccccchHHHHHhccCC----eeEEE-ecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEec
Confidence 3589999999999998887776776 99999 999999988887 44432 22 3456788999999887 4
Q ss_pred cccHHH-HHHHhccccCCCCEEEEec
Q 024016 81 PQVVKD-VAMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 81 ~~~~~~-v~~~i~~~l~~~~~vis~~ 105 (274)
-...+. +.++....++||.++|++.
T Consensus 243 gakaPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 243 GAKAPKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred CCCCceehhHHHHHhcCCCcEEEEEE
Confidence 333333 3355566688999999764
No 278
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=97.29 E-value=0.0007 Score=56.28 Aligned_cols=63 Identities=17% Similarity=0.290 Sum_probs=50.1
Q ss_pred EEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH--HHHHHHHcCceec-------cCchhhccCCCEEEEeeC
Q 024016 13 LGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLK--RRDAFESIGVKVL-------SDNNAVVEYSDVVVFSVK 80 (274)
Q Consensus 13 IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~--~~~~l~~~g~~~~-------~~~~~~~~~aDiIil~v~ 80 (274)
|.|+|+ |.+|++++..|++.++ +|.+. .|++. ..+.+...|+++. .+..++++++|.||++++
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~----~V~~l-~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~ 73 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGF----SVRAL-VRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTP 73 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTG----CEEEE-ESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESS
T ss_pred CEEECCccHHHHHHHHHHHhCCC----CcEEE-EeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecC
Confidence 688986 9999999999999998 99998 78753 4667777787643 123446789999999998
No 279
>PRK14982 acyl-ACP reductase; Provisional
Probab=97.28 E-value=0.00079 Score=59.02 Aligned_cols=92 Identities=15% Similarity=0.245 Sum_probs=63.1
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhC-CCCCCCcEEEEeCCCHHHHHHHHH-cC-ceeccCchhhccCCCEEEEeeCc-
Q 024016 7 PAESFILGFIGA-GKMAESIAKGVAKS-GVLPPDRICTAVHSNLKRRDAFES-IG-VKVLSDNNAVVEYSDVVVFSVKP- 81 (274)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~~a~~L~~~-g~~~~~~v~v~~~r~~~~~~~l~~-~g-~~~~~~~~~~~~~aDiIil~v~~- 81 (274)
..+.++|.|+|+ |.||+.+++.|.+. |. .+++++ +|++++++.+.. .+ ..+ .+..+.+.++|+|+.++..
T Consensus 152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv---~~lilv-~R~~~rl~~La~el~~~~i-~~l~~~l~~aDiVv~~ts~~ 226 (340)
T PRK14982 152 DLSKATVAVVGATGDIGSAVCRWLDAKTGV---AELLLV-ARQQERLQELQAELGGGKI-LSLEEALPEADIVVWVASMP 226 (340)
T ss_pred CcCCCEEEEEccChHHHHHHHHHHHhhCCC---CEEEEE-cCCHHHHHHHHHHhccccH-HhHHHHHccCCEEEECCcCC
Confidence 345689999998 89999999999854 42 289999 999988888765 22 222 2456778899999998843
Q ss_pred ccHHHHHHHhccccCCCCEEEEecCC
Q 024016 82 QVVKDVAMQIRPLLSRKKLLVSVAAG 107 (274)
Q Consensus 82 ~~~~~v~~~i~~~l~~~~~vis~~~g 107 (274)
..+ ++.. ..++++.+++++.-+
T Consensus 227 ~~~--~I~~--~~l~~~~~viDiAvP 248 (340)
T PRK14982 227 KGV--EIDP--ETLKKPCLMIDGGYP 248 (340)
T ss_pred cCC--cCCH--HHhCCCeEEEEecCC
Confidence 321 0100 123567788877443
No 280
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.28 E-value=0.0016 Score=55.74 Aligned_cols=73 Identities=15% Similarity=0.269 Sum_probs=54.1
Q ss_pred CCCCCeEEEEcccH-HHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccH
Q 024016 7 PAESFILGFIGAGK-MAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVV 84 (274)
Q Consensus 7 ~~~~~~IgiIG~G~-mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~ 84 (274)
..+.+++.|||.|. .|.+++..|.+.|. +|+++ +|... +..+.++++|+||.|++ |.-+
T Consensus 156 ~l~Gk~vvViG~gg~vGkpia~~L~~~ga----tVtv~-~~~t~--------------~L~~~~~~aDIvI~AtG~~~~v 216 (283)
T PRK14192 156 ELAGKHAVVVGRSAILGKPMAMMLLNANA----TVTIC-HSRTQ--------------NLPELVKQADIIVGAVGKPELI 216 (283)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCC----EEEEE-eCCch--------------hHHHHhccCCEEEEccCCCCcC
Confidence 34567999999998 99999999999987 99999 77321 23344578999999995 3311
Q ss_pred HHHHHHhccccCCCCEEEEe
Q 024016 85 KDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~ 104 (274)
. . ..++++.+++++
T Consensus 217 ~---~---~~lk~gavViDv 230 (283)
T PRK14192 217 K---K---DWIKQGAVVVDA 230 (283)
T ss_pred C---H---HHcCCCCEEEEE
Confidence 1 1 236788888876
No 281
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=97.28 E-value=0.0045 Score=56.22 Aligned_cols=70 Identities=19% Similarity=0.296 Sum_probs=51.4
Q ss_pred CeEEEEcccHH-HHHHHHHHHhCC-CCCCCcEEEEeCCCHHHHHHHHH--------cC----ceeccCchhhccCCCEEE
Q 024016 11 FILGFIGAGKM-AESIAKGVAKSG-VLPPDRICTAVHSNLKRRDAFES--------IG----VKVLSDNNAVVEYSDVVV 76 (274)
Q Consensus 11 ~~IgiIG~G~m-G~~~a~~L~~~g-~~~~~~v~v~~~r~~~~~~~l~~--------~g----~~~~~~~~~~~~~aDiIi 76 (274)
|||+|||.|.. ..-+.+.|++.. -++..+|.++ |.++++.+...+ .| +..++|..+++++||.||
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~-Did~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~~Al~gADfVi 79 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLY-DIDEERLDIILTIAKRYVEEVGADIKFEKTMDLEDAIIDADFVI 79 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEE-cCCHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCEEE
Confidence 69999999983 344666676655 2455689999 999988654221 33 345688899999999999
Q ss_pred EeeCc
Q 024016 77 FSVKP 81 (274)
Q Consensus 77 l~v~~ 81 (274)
..+..
T Consensus 80 ~~irv 84 (425)
T cd05197 80 NQFRV 84 (425)
T ss_pred Eeeec
Confidence 99854
No 282
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=97.26 E-value=0.0012 Score=50.14 Aligned_cols=33 Identities=33% Similarity=0.494 Sum_probs=27.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCC
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS 46 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r 46 (274)
..||.|+|+|.+|+.++.+|...|. .+++++ |.
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv---~~i~lv-D~ 34 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGV---GKITLV-DD 34 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTT---SEEEEE-ES
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCC---Cceeec-CC
Confidence 4699999999999999999999997 367777 54
No 283
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=97.25 E-value=0.0025 Score=52.39 Aligned_cols=34 Identities=29% Similarity=0.457 Sum_probs=29.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~ 47 (274)
..+|.|||+|.+|+.++..|...|. .+++++ |.+
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~Gv---g~i~lv-D~D 61 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSGV---GNLKLV-DFD 61 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCC---CeEEEE-eCC
Confidence 4689999999999999999999997 368888 766
No 284
>CHL00194 ycf39 Ycf39; Provisional
Probab=97.23 E-value=0.00086 Score=58.55 Aligned_cols=65 Identities=15% Similarity=0.240 Sum_probs=50.3
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceec----cC---chhhccCCCEEEEeeC
Q 024016 11 FILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL----SD---NNAVVEYSDVVVFSVK 80 (274)
Q Consensus 11 ~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~----~~---~~~~~~~aDiIil~v~ 80 (274)
|||.|+| +|.+|+.+++.|++.|| +|++. .|++++...+...++++. .+ ..++++++|+||-++.
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~----~V~~l-~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGY----QVRCL-VRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC----eEEEE-EcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 5899998 59999999999999999 99999 898877655555565432 12 2455788999998763
No 285
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=97.23 E-value=0.0058 Score=55.64 Aligned_cols=70 Identities=14% Similarity=0.208 Sum_probs=50.0
Q ss_pred CeEEEEcccHH-HHHHHHHHHhCC-CCCCCcEEEEeCCCHHHHHHHHH--------cC----ceeccCchhhccCCCEEE
Q 024016 11 FILGFIGAGKM-AESIAKGVAKSG-VLPPDRICTAVHSNLKRRDAFES--------IG----VKVLSDNNAVVEYSDVVV 76 (274)
Q Consensus 11 ~~IgiIG~G~m-G~~~a~~L~~~g-~~~~~~v~v~~~r~~~~~~~l~~--------~g----~~~~~~~~~~~~~aDiIi 76 (274)
|||+|||+|.. +..+...|.+.. -++..+|.++ |.++++.+...+ .| +..++|..+++++||.||
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~-DId~~rl~~v~~l~~~~~~~~g~~~~v~~Ttdr~eAl~gADfVi 79 (437)
T cd05298 1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLY-DIDAERQEKVAEAVKILFKENYPEIKFVYTTDPEEAFTDADFVF 79 (437)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEE-CCCHHHHHHHHHHHHHHHHhhCCCeEEEEECCHHHHhCCCCEEE
Confidence 69999999985 223555665542 2355689999 999988654322 23 345678899999999999
Q ss_pred EeeCc
Q 024016 77 FSVKP 81 (274)
Q Consensus 77 l~v~~ 81 (274)
.....
T Consensus 80 ~~irv 84 (437)
T cd05298 80 AQIRV 84 (437)
T ss_pred EEeee
Confidence 99854
No 286
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=97.20 E-value=0.0021 Score=53.39 Aligned_cols=78 Identities=15% Similarity=0.257 Sum_probs=52.4
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEE-EEeCC----------CHHHHHHHHH-cC-------ceeccCchhh
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRIC-TAVHS----------NLKRRDAFES-IG-------VKVLSDNNAV 68 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~-v~~~r----------~~~~~~~l~~-~g-------~~~~~~~~~~ 68 (274)
++.+||+|.|.|++|+.+++.|.+.|. .|+ +. |. +.+.+..+++ .| .... ++.+.
T Consensus 29 l~~~~v~I~G~G~VG~~~a~~L~~~g~----~vv~v~-D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~-~~~~i 102 (227)
T cd01076 29 LAGARVAIQGFGNVGSHAARFLHEAGA----KVVAVS-DSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERI-TNEEL 102 (227)
T ss_pred ccCCEEEEECCCHHHHHHHHHHHHCCC----EEEEEE-CCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceec-CCccc
Confidence 456899999999999999999999998 776 55 76 5665555444 23 1211 22232
Q ss_pred c-cCCCEEEEeeCcccH-HHHHHHh
Q 024016 69 V-EYSDVVVFSVKPQVV-KDVAMQI 91 (274)
Q Consensus 69 ~-~~aDiIil~v~~~~~-~~v~~~i 91 (274)
. .+||+++-|.+.+.+ .+-+.++
T Consensus 103 ~~~~~Dvlip~a~~~~i~~~~~~~l 127 (227)
T cd01076 103 LELDCDILIPAALENQITADNADRI 127 (227)
T ss_pred eeecccEEEecCccCccCHHHHhhc
Confidence 2 378999999876654 3444444
No 287
>PRK06270 homoserine dehydrogenase; Provisional
Probab=97.19 E-value=0.0015 Score=57.63 Aligned_cols=93 Identities=20% Similarity=0.258 Sum_probs=54.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhC--------CCCCCCcEEEEeCCC----------HHHHHHHHH-cCc-e------ecc
Q 024016 10 SFILGFIGAGKMAESIAKGVAKS--------GVLPPDRICTAVHSN----------LKRRDAFES-IGV-K------VLS 63 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~--------g~~~~~~v~v~~~r~----------~~~~~~l~~-~g~-~------~~~ 63 (274)
.+||+|+|+|+||+.+++.|.+. |. ..+|...++++ .+++..+.+ .+. . ...
T Consensus 2 ~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~--~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (341)
T PRK06270 2 EMKIALIGFGGVGQGVAELLAEKREYLKKRYGL--DLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEI 79 (341)
T ss_pred eEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCC--CEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccC
Confidence 36899999999999999998765 31 01444332653 334333333 231 1 123
Q ss_pred Cchhhcc--CCCEEEEeeCcccH--HHHHHHhccccCCCCEEEEe
Q 024016 64 DNNAVVE--YSDVVVFSVKPQVV--KDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 64 ~~~~~~~--~aDiIil~v~~~~~--~~v~~~i~~~l~~~~~vis~ 104 (274)
+..+++. +.|+|+.|+|+... +...+-+...+..|+-||+.
T Consensus 80 d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVta 124 (341)
T PRK06270 80 SGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTS 124 (341)
T ss_pred CHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcC
Confidence 5566653 68999999986432 22222223345567777754
No 288
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=97.19 E-value=0.0068 Score=49.60 Aligned_cols=87 Identities=14% Similarity=0.186 Sum_probs=60.3
Q ss_pred CCCCCCCC--CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-HHHHHHHH-cCceeccC--chhhccCCCE
Q 024016 1 MDAFPIPA--ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-KRRDAFES-IGVKVLSD--NNAVVEYSDV 74 (274)
Q Consensus 1 ~~~~~~~~--~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~-~~~~~l~~-~g~~~~~~--~~~~~~~aDi 74 (274)
|..+|... +.++|.|||.|..|..=++.|++.|- +|+++ ..+. +....+.+ .++..... ..+...++++
T Consensus 1 ~~~lPl~~~l~~k~VlvvGgG~va~rKa~~ll~~ga----~v~Vv-s~~~~~el~~~~~~~~i~~~~~~~~~~~~~~~~l 75 (210)
T COG1648 1 MNYLPLFLDLEGKKVLVVGGGSVALRKARLLLKAGA----DVTVV-SPEFEPELKALIEEGKIKWIEREFDAEDLDDAFL 75 (210)
T ss_pred CCccceEEEcCCCEEEEECCCHHHHHHHHHHHhcCC----EEEEE-cCCccHHHHHHHHhcCcchhhcccChhhhcCceE
Confidence 45566554 45789999999999999999999998 99999 5554 44444444 33332211 1233456999
Q ss_pred EEEeeCcccHHHHHHHhc
Q 024016 75 VVFSVKPQVVKDVAMQIR 92 (274)
Q Consensus 75 Iil~v~~~~~~~v~~~i~ 92 (274)
||.|+++..+.+-+.+..
T Consensus 76 viaAt~d~~ln~~i~~~a 93 (210)
T COG1648 76 VIAATDDEELNERIAKAA 93 (210)
T ss_pred EEEeCCCHHHHHHHHHHH
Confidence 999999887766555444
No 289
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=97.18 E-value=0.0012 Score=60.53 Aligned_cols=90 Identities=23% Similarity=0.319 Sum_probs=67.1
Q ss_pred CCCeEEEEcc----cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccH
Q 024016 9 ESFILGFIGA----GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVV 84 (274)
Q Consensus 9 ~~~~IgiIG~----G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~ 84 (274)
+.++|+|||. |++|..+.++|.+.|| ..+|+.. |++.... .|+.++.+..++-...|++++++|++.+
T Consensus 6 ~p~siavvGaS~~~~~~g~~~~~~l~~~gf--~g~v~~V-np~~~~i-----~G~~~~~sl~~lp~~~Dlavi~vp~~~~ 77 (447)
T TIGR02717 6 NPKSVAVIGASRDPGKVGYAIMKNLIEGGY--KGKIYPV-NPKAGEI-----LGVKAYPSVLEIPDPVDLAVIVVPAKYV 77 (447)
T ss_pred CCCEEEEEccCCCCCchHHHHHHHHHhCCC--CCcEEEE-CCCCCcc-----CCccccCCHHHCCCCCCEEEEecCHHHH
Confidence 3468999999 8999999999999998 1256666 6553321 5788888888877788999999999999
Q ss_pred HHHHHHhccccCCCCEEEEecCCC
Q 024016 85 KDVAMQIRPLLSRKKLLVSVAAGV 108 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~~~g~ 108 (274)
.+++++.... ....++| +++|.
T Consensus 78 ~~~l~e~~~~-gv~~~vi-~s~gf 99 (447)
T TIGR02717 78 PQVVEECGEK-GVKGAVV-ITAGF 99 (447)
T ss_pred HHHHHHHHhc-CCCEEEE-ECCCc
Confidence 9999887653 2333333 44554
No 290
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=97.17 E-value=0.00099 Score=58.45 Aligned_cols=94 Identities=16% Similarity=0.241 Sum_probs=61.5
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHH--HHHcCceeccCchhh-ccCCCEEEEeeCcccH
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA--FESIGVKVLSDNNAV-VEYSDVVVFSVKPQVV 84 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~--l~~~g~~~~~~~~~~-~~~aDiIil~v~~~~~ 84 (274)
+.+||+|||+ |..|.-+.+.|.+..| +..++... ....+.-+. +......+. +..+. ..++|++|+|+|....
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~h-P~~~l~~l-aS~~saG~~~~~~~~~~~v~-~~~~~~~~~~Dvvf~a~p~~~s 79 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQF-PVGELYAL-ASEESAGETLRFGGKSVTVQ-DAAEFDWSQAQLAFFVAGREAS 79 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCC-CceEEEEE-EccCcCCceEEECCcceEEE-eCchhhccCCCEEEECCCHHHH
Confidence 6789999988 9999999998887655 44566655 322211111 111122332 33332 2689999999999887
Q ss_pred HHHHHHhccccCCCCEEEEecCCC
Q 024016 85 KDVAMQIRPLLSRKKLLVSVAAGV 108 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~~~g~ 108 (274)
.++..++. ..|..||+.++..
T Consensus 80 ~~~~~~~~---~~g~~VIDlS~~f 100 (336)
T PRK08040 80 AAYAEEAT---NAGCLVIDSSGLF 100 (336)
T ss_pred HHHHHHHH---HCCCEEEECChHh
Confidence 77777664 3578899887654
No 291
>PF10728 DUF2520: Domain of unknown function (DUF2520); InterPro: IPR018931 This presumed domain is found C-terminal to a Rossmann-like domain suggesting that these proteins are oxidoreductases. ; PDB: 3D1L_A 2I76_A 3DFU_A.
Probab=97.17 E-value=0.0054 Score=46.34 Aligned_cols=101 Identities=20% Similarity=0.232 Sum_probs=65.3
Q ss_pred CHHHHHHHHHHhhhcCCe-EEcCccc---hhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Q 024016 147 TEEDGELIGKLFGSVGKI-WRADEKL---FDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMV 222 (274)
Q Consensus 147 ~~~~~~~v~~ll~~~g~~-~~~~e~~---~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~~~~~~~~ 222 (274)
+++..+.++++++.+|.. +.+++++ +|...++. .+|...+...-.+...+.|++.+++.+++.+.+.++.+.+
T Consensus 9 d~~~~~~l~~l~~~lg~~~~~i~~~~r~~yHaAav~a---sNf~~~L~~~a~~ll~~~gi~~~~a~~~L~PLi~~t~~n~ 85 (132)
T PF10728_consen 9 DEEALEVLQELAKELGGRPFEIDSEQRALYHAAAVFA---SNFLVALYALAAELLEQAGIDFEEALEALLPLIRETLENI 85 (132)
T ss_dssp SHHHHHHHHHHHHHTTSEEEE--GGGHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTT-SHHH--HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCceEEeCHHhHHHHHHHHHHH---HhhHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHH
Confidence 788999999999999965 7777664 45555543 3555555555555677899999999999999999999998
Q ss_pred HhcCCCh-HHHHHhcCCCC-chHHHHHHHHHh
Q 024016 223 TKSGKHP-GQLKDDVASPG-GTTIAGIHELEK 252 (274)
Q Consensus 223 ~~~~~~~-~~~~~~~~~~~-g~t~~~l~~l~~ 252 (274)
.+.| | +.+..-+...+ ++...+++.|++
T Consensus 86 ~~~g--~~~alTGP~~RgD~~Tv~kHl~~L~~ 115 (132)
T PF10728_consen 86 LQLG--PADALTGPAARGDIGTVAKHLAALDD 115 (132)
T ss_dssp HHS---HHHH--SCCHCTHHHHHHHHHHHCCC
T ss_pred HhcC--chhccCCCcccCCHHHHHHHHHHHhc
Confidence 7643 3 33332222222 366667777765
No 292
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=97.16 E-value=0.0014 Score=56.88 Aligned_cols=82 Identities=10% Similarity=0.175 Sum_probs=56.5
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccHHHHH
Q 024016 10 SFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVA 88 (274)
Q Consensus 10 ~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v~ 88 (274)
++||+||| .|..|.-+.+-|.++.++ ++... ..+..+ .. .+..+...++|++|+|+|.....++.
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~hp~~---~l~~~-~s~~~~-------~~---~~~~~~~~~~DvvFlalp~~~s~~~~ 67 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGRSDI---ELLSI-PEAKRK-------DA---AARRELLNAADVAILCLPDDAAREAV 67 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhcCCCe---EEEEE-ecCCCC-------cc---cCchhhhcCCCEEEECCCHHHHHHHH
Confidence 57999998 599999999988776542 44333 222111 11 22344557899999999999888887
Q ss_pred HHhccccCCCCEEEEecCCC
Q 024016 89 MQIRPLLSRKKLLVSVAAGV 108 (274)
Q Consensus 89 ~~i~~~l~~~~~vis~~~g~ 108 (274)
.++. ..|..||+.++..
T Consensus 68 ~~~~---~~g~~VIDlSadf 84 (313)
T PRK11863 68 ALID---NPATRVIDASTAH 84 (313)
T ss_pred HHHH---hCCCEEEECChhh
Confidence 7764 3678899886543
No 293
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=97.15 E-value=0.0017 Score=56.79 Aligned_cols=62 Identities=18% Similarity=0.259 Sum_probs=44.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV 79 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v 79 (274)
+.++|.|||+|-||...+++|.++|. .+|++. ||+.+.. .+.+... ...+...++|+||.|+
T Consensus 173 ~~k~vLvIGaGem~~l~a~~L~~~g~---~~i~v~-nRt~~~~-~~~~~~~----~~~~~~~~~DvVIs~t 234 (338)
T PRK00676 173 KKASLLFIGYSEINRKVAYYLQRQGY---SRITFC-SRQQLTL-PYRTVVR----EELSFQDPYDVIFFGS 234 (338)
T ss_pred cCCEEEEEcccHHHHHHHHHHHHcCC---CEEEEE-cCCcccc-chhhhhh----hhhhcccCCCEEEEcC
Confidence 56799999999999999999999996 279999 9997531 1111100 1113346889999973
No 294
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.14 E-value=0.032 Score=49.42 Aligned_cols=154 Identities=19% Similarity=0.212 Sum_probs=95.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH----c-Cc---e-----------------eccCc
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES----I-GV---K-----------------VLSDN 65 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~----~-g~---~-----------------~~~~~ 65 (274)
.+|-|+|+|..+--+|..+.+.+. ..|-+. +|...+.+.+.+ . +. . ...+.
T Consensus 2 ~~VLI~GtGPvAiQLAv~lk~~~~---~~vGi~-~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~~~~ 77 (429)
T PF10100_consen 2 GNVLIVGTGPVAIQLAVILKKHGN---CRVGIV-GRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVFQDY 77 (429)
T ss_pred CceEEEcCCHHHHHHHHHHHhccC---ceeeee-cCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhhcCH
Confidence 479999999999999998877654 368888 887666554432 1 10 1 12334
Q ss_pred hhhccCCCEEEEeeCcccHHHHHHHhcc-ccCCCCEEEEecCCCCHHHH-HHhhC----CCceEEEcC----------Cc
Q 024016 66 NAVVEYSDVVVFSVKPQVVKDVAMQIRP-LLSRKKLLVSVAAGVKLKDL-QEWTG----HSRFIRVMP----------NT 129 (274)
Q Consensus 66 ~~~~~~aDiIil~v~~~~~~~v~~~i~~-~l~~~~~vis~~~g~~~~~l-~~~~~----~~~~~~~~p----------~~ 129 (274)
.++..+-|.+|+|||.++..+|+++|.. .++.=+.+|=++.+.....+ +..+. +..++.+.. ..
T Consensus 78 ~~i~g~WdtlILavtaDAY~~VL~ql~~~~L~~vk~iVLvSPtfGS~~lv~~~l~~~~~~~EVISFStY~gdTr~~d~~~ 157 (429)
T PF10100_consen 78 EEIEGEWDTLILAVTADAYLDVLQQLPWEVLKRVKSIVLVSPTFGSHLLVKGFLNDLGPDAEVISFSTYYGDTRWSDGEQ 157 (429)
T ss_pred HHhcccccEEEEEechHHHHHHHHhcCHHHHhhCCEEEEECcccchHHHHHHHHHhcCCCceEEEeecccccceeccCCC
Confidence 5566678999999999999999998764 23333456656666665433 22222 455655432 11
Q ss_pred HHhh-cCC--ceEEecCCCCCHHHHHHHHHHhhhcCCe-EEcC
Q 024016 130 PSAV-GEA--ATVMSLGGTATEEDGELIGKLFGSVGKI-WRAD 168 (274)
Q Consensus 130 ~~~~-~~g--~~~i~~~~~~~~~~~~~v~~ll~~~g~~-~~~~ 168 (274)
|..+ -.| ..++......+....++++.+++.+|.. ..++
T Consensus 158 ~~~vlt~~vK~kiYigSt~~~s~~~~~l~~~~~~~gI~~~~~~ 200 (429)
T PF10100_consen 158 PNRVLTTAVKKKIYIGSTHSNSPELDKLCRLLAQLGIQLEVMD 200 (429)
T ss_pred cceehhhhhhceEEEEeCCCCChHHHHHHHHHHHcCCeEEEeC
Confidence 1111 011 1122223344567789999999999965 5554
No 295
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=97.14 E-value=0.0044 Score=50.61 Aligned_cols=73 Identities=16% Similarity=0.228 Sum_probs=53.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH-HHHHHHHc-Cceecc--CchhhccCCCEEEEeeCcccH
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK-RRDAFESI-GVKVLS--DNNAVVEYSDVVVFSVKPQVV 84 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~-~~~~l~~~-g~~~~~--~~~~~~~~aDiIil~v~~~~~ 84 (274)
+.++|.|||.|.+|..-++.|++.|. +|+++ +.+.. ..+.+.+. .+.... -..+.+.++|+||.|+.+..+
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga----~VtVv-sp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at~d~~l 82 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGA----QLRVI-AEELESELTLLAEQGGITWLARCFDADILEGAFLVIAATDDEEL 82 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCC----EEEEE-cCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECCCCHHH
Confidence 45799999999999999999999998 99999 77653 44555554 344321 113457889999999877655
Q ss_pred HH
Q 024016 85 KD 86 (274)
Q Consensus 85 ~~ 86 (274)
..
T Consensus 83 n~ 84 (205)
T TIGR01470 83 NR 84 (205)
T ss_pred HH
Confidence 44
No 296
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=97.11 E-value=0.0019 Score=55.69 Aligned_cols=70 Identities=26% Similarity=0.230 Sum_probs=47.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH---HHHHHHHH-c---C--cee--c--cC---chhhccCC
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL---KRRDAFES-I---G--VKV--L--SD---NNAVVEYS 72 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~---~~~~~l~~-~---g--~~~--~--~~---~~~~~~~a 72 (274)
+.+++.|+|+|.+|.+++..|.+.|. .+|+++ +|++ ++++.+.+ . + +.+ . ++ ..+.++.+
T Consensus 125 ~~k~vlI~GAGGagrAia~~La~~G~---~~V~I~-~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~ 200 (289)
T PRK12548 125 KGKKLTVIGAGGAATAIQVQCALDGA---KEITIF-NIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASS 200 (289)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC---CEEEEE-eCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccC
Confidence 45689999999999999999999997 249999 9986 56655543 1 1 111 1 11 12234567
Q ss_pred CEEEEeeCcc
Q 024016 73 DVVVFSVKPQ 82 (274)
Q Consensus 73 DiIil~v~~~ 82 (274)
|+||-|+|..
T Consensus 201 DilINaTp~G 210 (289)
T PRK12548 201 DILVNATLVG 210 (289)
T ss_pred CEEEEeCCCC
Confidence 8888888654
No 297
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=97.07 E-value=0.00068 Score=50.10 Aligned_cols=83 Identities=16% Similarity=0.216 Sum_probs=51.5
Q ss_pred cccHHHHHHHHHHHhC----CCCCCCcEEEEeCCC--HHHHHHHHHcCceeccCchhhcc--CCCEEEEeeCcccHHHHH
Q 024016 17 GAGKMAESIAKGVAKS----GVLPPDRICTAVHSN--LKRRDAFESIGVKVLSDNNAVVE--YSDVVVFSVKPQVVKDVA 88 (274)
Q Consensus 17 G~G~mG~~~a~~L~~~----g~~~~~~v~v~~~r~--~~~~~~l~~~g~~~~~~~~~~~~--~aDiIil~v~~~~~~~v~ 88 (274)
|+|+||+.++..|.+. ++ +|..+++|+ ..........+.....+..++++ +.|+||=|+.++.+.+.+
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~----~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~~~~~~~~ 76 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDL----EVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSSEAVAEYY 76 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEE----EEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCcccCCE----EEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCchHHHHHH
Confidence 8999999999999876 34 554333887 11111111123445577788877 899999998888777766
Q ss_pred HHhccccCCCCEEEEecC
Q 024016 89 MQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 89 ~~i~~~l~~~~~vis~~~ 106 (274)
... +..|.-||+.+.
T Consensus 77 ~~~---L~~G~~VVt~nk 91 (117)
T PF03447_consen 77 EKA---LERGKHVVTANK 91 (117)
T ss_dssp HHH---HHTTCEEEES-H
T ss_pred HHH---HHCCCeEEEECH
Confidence 554 346677886644
No 298
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=97.07 E-value=0.0045 Score=47.40 Aligned_cols=32 Identities=28% Similarity=0.444 Sum_probs=28.3
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024016 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (274)
Q Consensus 12 ~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~ 47 (274)
||.|||+|.+|+.++++|...|. .+++++ |.+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv---~~i~iv-D~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGV---GKITLI-DFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC---CEEEEE-cCC
Confidence 68999999999999999999997 368888 765
No 299
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=97.07 E-value=0.0011 Score=58.34 Aligned_cols=91 Identities=16% Similarity=0.230 Sum_probs=59.5
Q ss_pred eEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCc--eeccCchhhccCCCEEEEeeCcccHHHHH
Q 024016 12 ILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGV--KVLSDNNAVVEYSDVVVFSVKPQVVKDVA 88 (274)
Q Consensus 12 ~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~--~~~~~~~~~~~~aDiIil~v~~~~~~~v~ 88 (274)
||+||| .|..|..+.+.|.+++| +..++.++ .+..+.-+.+.-.|. .+.+-..+.+.++|++|+|++.....++.
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~h-p~~~l~~~-as~~~~g~~~~~~~~~~~~~~~~~~~~~~~D~v~~a~g~~~s~~~a 78 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNF-PIDKLVLL-ASDRSAGRKVTFKGKELEVNEAKIESFEGIDIALFSAGGSVSKEFA 78 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCC-ChhhEEEE-eccccCCCeeeeCCeeEEEEeCChHHhcCCCEEEECCCHHHHHHHH
Confidence 689999 69999999999988887 43345445 444332222222232 22211223457899999999999888877
Q ss_pred HHhccccCCCCEEEEecCC
Q 024016 89 MQIRPLLSRKKLLVSVAAG 107 (274)
Q Consensus 89 ~~i~~~l~~~~~vis~~~g 107 (274)
..+. ..|..||+.++.
T Consensus 79 ~~~~---~~G~~VID~ss~ 94 (339)
T TIGR01296 79 PKAA---KCGAIVIDNTSA 94 (339)
T ss_pred HHHH---HCCCEEEECCHH
Confidence 6654 356778887553
No 300
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=97.05 E-value=0.0047 Score=51.61 Aligned_cols=100 Identities=19% Similarity=0.238 Sum_probs=65.9
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHH-----HHHHH---cCceeccCchhhccCCCEEEEeeC
Q 024016 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRR-----DAFES---IGVKVLSDNNAVVEYSDVVVFSVK 80 (274)
Q Consensus 10 ~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~-----~~l~~---~g~~~~~~~~~~~~~aDiIil~v~ 80 (274)
++||+|.|+ |+||+.+.+.+.+...+ ++....+|.+... .++.. .|+.+.++......++|++|=.+.
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~---~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v~~~~~~~~~~~DV~IDFT~ 78 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEAPDL---ELVAAFDRPGSLSLGSDAGELAGLGLLGVPVTDDLLLVKADADVLIDFTT 78 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcCCCc---eEEEEEecCCccccccchhhhccccccCceeecchhhcccCCCEEEECCC
Confidence 579999999 99999999999877631 4433327765422 22222 456666666666778999999888
Q ss_pred cccHHHHHHHhccccCCCCEEEEecCCCCHHHHHH
Q 024016 81 PQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQE 115 (274)
Q Consensus 81 ~~~~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~ 115 (274)
|+...+.++....+ +-.+|| -+.|.+.+.+++
T Consensus 79 P~~~~~~l~~~~~~--~~~lVI-GTTGf~~e~~~~ 110 (266)
T COG0289 79 PEATLENLEFALEH--GKPLVI-GTTGFTEEQLEK 110 (266)
T ss_pred chhhHHHHHHHHHc--CCCeEE-ECCCCCHHHHHH
Confidence 88777776554432 223455 457787665543
No 301
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=97.03 E-value=0.0031 Score=51.95 Aligned_cols=112 Identities=16% Similarity=0.195 Sum_probs=65.3
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH----------HHHHHHHHc-Cceecc-----Cchhhc-
Q 024016 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL----------KRRDAFESI-GVKVLS-----DNNAVV- 69 (274)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~----------~~~~~l~~~-g~~~~~-----~~~~~~- 69 (274)
.++.+||.|.|.|++|+.+++.|.+.|. ..|.+. |.+. +..+...+. ++.... +..++.
T Consensus 20 ~l~g~~vaIqGfGnVG~~~a~~L~~~G~---~vV~vs-D~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 95 (217)
T cd05211 20 SLEGLTVAVQGLGNVGWGLAKKLAEEGG---KVLAVS-DPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILG 95 (217)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCC---EEEEEE-cCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCccccee
Confidence 3456899999999999999999999987 145566 8877 655554442 222111 122322
Q ss_pred cCCCEEEEeeCcccHH-HHHHHhccccCCCCEEEEecCC-CCHHHHHHhhCCCceEEEcCCc
Q 024016 70 EYSDVVVFSVKPQVVK-DVAMQIRPLLSRKKLLVSVAAG-VKLKDLQEWTGHSRFIRVMPNT 129 (274)
Q Consensus 70 ~~aDiIil~v~~~~~~-~v~~~i~~~l~~~~~vis~~~g-~~~~~l~~~~~~~~~~~~~p~~ 129 (274)
.+||+++.|...+.+. +...++. -++|+.-.++ ++. .-.+.+.. +-+.+.|..
T Consensus 96 ~~~DVlipaA~~~~i~~~~a~~l~-----a~~V~e~AN~p~t~-~a~~~L~~-~Gi~v~Pd~ 150 (217)
T cd05211 96 LDVDIFAPCALGNVIDLENAKKLK-----AKVVAEGANNPTTD-EALRILHE-RGIVVAPDI 150 (217)
T ss_pred ccccEEeeccccCccChhhHhhcC-----ccEEEeCCCCCCCH-HHHHHHHH-CCcEEEChH
Confidence 3899999998766543 3333332 2456654443 333 33334432 223444543
No 302
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.01 E-value=0.003 Score=58.18 Aligned_cols=65 Identities=15% Similarity=0.158 Sum_probs=49.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEe
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFS 78 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~ 78 (274)
+.+||.|||.|..|.+.|+.|.+.|+ +|+++ |+.+.....+.+.|+.......+.+.++|+||..
T Consensus 8 ~~~~i~viG~G~~G~~~a~~l~~~G~----~v~~~-D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~s 72 (460)
T PRK01390 8 AGKTVAVFGLGGSGLATARALVAGGA----EVIAW-DDNPASRAKAAAAGITTADLRTADWSGFAALVLS 72 (460)
T ss_pred CCCEEEEEeecHhHHHHHHHHHHCCC----EEEEE-CCChhhHHHHHhcCccccCCChhHHcCCCEEEEC
Confidence 45689999999999999999999999 99999 9776544456566776533222335679998864
No 303
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=97.00 E-value=0.0041 Score=53.54 Aligned_cols=70 Identities=20% Similarity=0.244 Sum_probs=50.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH---HHHHHHHH-c----C--ceeccCc------hhhccCC
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL---KRRDAFES-I----G--VKVLSDN------NAVVEYS 72 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~---~~~~~l~~-~----g--~~~~~~~------~~~~~~a 72 (274)
+.+++.|||+|-.+++++..|.+.|. .+|+++ +|++ ++++.+.+ . + +... +. .+...++
T Consensus 123 ~~k~vlvlGaGGaarAi~~~l~~~g~---~~i~i~-nRt~~~~~ka~~la~~~~~~~~~~~~~~-~~~~~~~l~~~~~~a 197 (288)
T PRK12749 123 KGKTMVLLGAGGASTAIGAQGAIEGL---KEIKLF-NRRDEFFDKALAFAQRVNENTDCVVTVT-DLADQQAFAEALASA 197 (288)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC---CEEEEE-eCCccHHHHHHHHHHHhhhccCceEEEe-chhhhhhhhhhcccC
Confidence 45689999999999999999998886 389999 9994 57777765 2 1 1221 11 1234578
Q ss_pred CEEEEeeCccc
Q 024016 73 DVVVFSVKPQV 83 (274)
Q Consensus 73 DiIil~v~~~~ 83 (274)
|+||-|+|...
T Consensus 198 DivINaTp~Gm 208 (288)
T PRK12749 198 DILTNGTKVGM 208 (288)
T ss_pred CEEEECCCCCC
Confidence 99998887643
No 304
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=96.98 E-value=0.0029 Score=54.00 Aligned_cols=66 Identities=20% Similarity=0.218 Sum_probs=50.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeccCchhhccCCCEEEEeeCcc
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQ 82 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDiIil~v~~~ 82 (274)
.++.|+|+|-.+++++..|.+.|. .+|+++ +|++++++.+.+ .+.....+. ....+|+||=|+|..
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~g~---~~i~i~-nR~~~~a~~la~~~~~~~~~~~--~~~~~dlvINaTp~G 189 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDAGF---TDGTIV-ARNEKTGKALAELYGYEWRPDL--GGIEADILVNVTPIG 189 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCC---CEEEEE-eCCHHHHHHHHHHhCCcchhhc--ccccCCEEEECCccc
Confidence 489999999999999999999886 269999 999999988876 333221111 124589999888754
No 305
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=96.98 E-value=0.0023 Score=56.26 Aligned_cols=96 Identities=14% Similarity=0.195 Sum_probs=59.6
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCC-CHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccHHHH
Q 024016 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHS-NLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDV 87 (274)
Q Consensus 10 ~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r-~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v 87 (274)
.+||||||+ |..|.-|.+.|.++.+++..++..+..+ +..+.-.+......+.....+...++|++|+|+|.....++
T Consensus 5 ~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~~~~~~~~~Divf~a~~~~~s~~~ 84 (347)
T PRK06728 5 GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKINSFEGVDIAFFSAGGEVSRQF 84 (347)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCcceEEEeCCHHHhcCCCEEEECCChHHHHHH
Confidence 369999988 9999999998885443333335545122 22111111111223221122335789999999999988887
Q ss_pred HHHhccccCCCCEEEEecCCC
Q 024016 88 AMQIRPLLSRKKLLVSVAAGV 108 (274)
Q Consensus 88 ~~~i~~~l~~~~~vis~~~g~ 108 (274)
...+. ..|..||+.++..
T Consensus 85 ~~~~~---~~G~~VID~Ss~f 102 (347)
T PRK06728 85 VNQAV---SSGAIVIDNTSEY 102 (347)
T ss_pred HHHHH---HCCCEEEECchhh
Confidence 77654 3678899886654
No 306
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=96.98 E-value=0.0055 Score=54.05 Aligned_cols=79 Identities=15% Similarity=0.235 Sum_probs=53.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH---------------------HHHH----HHHH--cCcee-
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL---------------------KRRD----AFES--IGVKV- 61 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~---------------------~~~~----~l~~--~g~~~- 61 (274)
..||.|||+|.+|+.++..|...|. .+++++ |++. .|++ .+.+ ..+.+
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGv---g~i~lv-D~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~ 99 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGV---GKVTIV-DRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVE 99 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCC---CeEEEE-eCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEE
Confidence 4689999999999999999999997 378888 7752 1222 2222 12221
Q ss_pred -c------cCchhhccCCCEEEEeeCcccHHHHHHHhc
Q 024016 62 -L------SDNNAVVEYSDVVVFSVKPQVVKDVAMQIR 92 (274)
Q Consensus 62 -~------~~~~~~~~~aDiIil~v~~~~~~~v~~~i~ 92 (274)
. .+..+.++++|+||.|+.....+..+.++.
T Consensus 100 ~~~~~~~~~~~~~~~~~~DlVid~~Dn~~~r~~ln~~~ 137 (339)
T PRK07688 100 AIVQDVTAEELEELVTGVDLIIDATDNFETRFIVNDAA 137 (339)
T ss_pred EEeccCCHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHH
Confidence 1 122456788999999997666666666554
No 307
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.97 E-value=0.003 Score=57.92 Aligned_cols=67 Identities=19% Similarity=0.274 Sum_probs=50.2
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-HHH----HHHHHcCceec--cCchhhccCCCEEEEee
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-KRR----DAFESIGVKVL--SDNNAVVEYSDVVVFSV 79 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~-~~~----~~l~~~g~~~~--~~~~~~~~~aDiIil~v 79 (274)
++.++|.|+|.|.+|.++|+.|.+.|+ +|+++ +++. +.. +.+.+.|+++. ....+...++|+||.++
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~----~V~~~-d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~ 76 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKLGA----KVILT-DEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSP 76 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-eCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECC
Confidence 356799999999999999999999999 99999 8874 333 33444566542 22334456799999987
No 308
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=96.95 E-value=0.0028 Score=54.43 Aligned_cols=69 Identities=20% Similarity=0.259 Sum_probs=49.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc-----Cc---eecc--CchhhccCCCEEEEe
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI-----GV---KVLS--DNNAVVEYSDVVVFS 78 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~-----g~---~~~~--~~~~~~~~aDiIil~ 78 (274)
+.+++.|+|+|-.|++++..|.+.|. .+|+++ ||+.++++.+.+. +. ...+ +..+...++|+||=|
T Consensus 126 ~~k~vlilGaGGaarAi~~aL~~~g~---~~i~i~-nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINa 201 (283)
T PRK14027 126 KLDSVVQVGAGGVGNAVAYALVTHGV---QKLQVA-DLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNA 201 (283)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHCCC---CEEEEE-cCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEc
Confidence 34689999999999999999999886 379999 9999999888751 21 1111 112234567777777
Q ss_pred eCc
Q 024016 79 VKP 81 (274)
Q Consensus 79 v~~ 81 (274)
+|.
T Consensus 202 Tp~ 204 (283)
T PRK14027 202 TPM 204 (283)
T ss_pred CCC
Confidence 763
No 309
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.94 E-value=0.0035 Score=57.94 Aligned_cols=69 Identities=26% Similarity=0.289 Sum_probs=52.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHH-HHcCceecc--CchhhccCCCEEEEe--eCcc
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF-ESIGVKVLS--DNNAVVEYSDVVVFS--VKPQ 82 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l-~~~g~~~~~--~~~~~~~~aDiIil~--v~~~ 82 (274)
..+||.|+|+|..|.++++.|.+.|+ +|+++ |+++....++ .+.|+.... ...+.+.++|+||.+ +|++
T Consensus 14 ~~~~v~v~G~G~sG~a~a~~L~~~G~----~V~~~-D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~Spgi~~~ 87 (473)
T PRK00141 14 LSGRVLVAGAGVSGRGIAAMLSELGC----DVVVA-DDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTSPGWRPD 87 (473)
T ss_pred cCCeEEEEccCHHHHHHHHHHHHCCC----EEEEE-CCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeCCCCCCC
Confidence 45689999999999999999999998 99999 9877655443 336876542 233446788999876 3543
No 310
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=96.94 E-value=0.0012 Score=52.14 Aligned_cols=78 Identities=15% Similarity=0.237 Sum_probs=52.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHH--hCCCCCCCcE-EEEeCCCHHHHHHHHHcCceec--cCchhhcc--CCCEEEEeeCc
Q 024016 9 ESFILGFIGAGKMAESIAKGVA--KSGVLPPDRI-CTAVHSNLKRRDAFESIGVKVL--SDNNAVVE--YSDVVVFSVKP 81 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~--~~g~~~~~~v-~v~~~r~~~~~~~l~~~g~~~~--~~~~~~~~--~aDiIil~v~~ 81 (274)
++.++.+||+|++|.+++..-. ++|. ++ .++ |.+++..-.-. .++.+. ++....++ +.|+.|+|||.
T Consensus 83 ~~tnviiVG~GnlG~All~Y~f~~~~~~----~iv~~F-Dv~~~~VG~~~-~~v~V~~~d~le~~v~~~dv~iaiLtVPa 156 (211)
T COG2344 83 KTTNVIIVGVGNLGRALLNYNFSKKNGM----KIVAAF-DVDPDKVGTKI-GDVPVYDLDDLEKFVKKNDVEIAILTVPA 156 (211)
T ss_pred cceeEEEEccChHHHHHhcCcchhhcCc----eEEEEe-cCCHHHhCccc-CCeeeechHHHHHHHHhcCccEEEEEccH
Confidence 4568999999999999986533 4555 54 466 98887542111 234332 33444455 68999999999
Q ss_pred ccHHHHHHHhc
Q 024016 82 QVVKDVAMQIR 92 (274)
Q Consensus 82 ~~~~~v~~~i~ 92 (274)
....++.+.+.
T Consensus 157 ~~AQ~vad~Lv 167 (211)
T COG2344 157 EHAQEVADRLV 167 (211)
T ss_pred HHHHHHHHHHH
Confidence 88888776654
No 311
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=96.92 E-value=0.0035 Score=55.35 Aligned_cols=91 Identities=16% Similarity=0.266 Sum_probs=55.7
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-c------C-------ceeccCchhhccCCCEE
Q 024016 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-I------G-------VKVLSDNNAVVEYSDVV 75 (274)
Q Consensus 11 ~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~------g-------~~~~~~~~~~~~~aDiI 75 (274)
+||+|+|+ |.||..+++.|..+..+ ++...++++++..+.+.+ . + ..+.....+...++|+|
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~---~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV 77 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYF---ELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASKDVDIV 77 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCc---eEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhccCCEE
Confidence 58999995 99999999988776531 554331443322222211 0 1 11111122345789999
Q ss_pred EEeeCcccHHHHHHHhccccCCCCEEEEecCC
Q 024016 76 VFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAG 107 (274)
Q Consensus 76 il~v~~~~~~~v~~~i~~~l~~~~~vis~~~g 107 (274)
|+|+|.....++...+. ..|..+|+.++.
T Consensus 78 f~a~p~~~s~~~~~~~~---~~G~~VIDlsg~ 106 (341)
T TIGR00978 78 FSALPSEVAEEVEPKLA---EAGKPVFSNASN 106 (341)
T ss_pred EEeCCHHHHHHHHHHHH---HCCCEEEECChh
Confidence 99999998777776553 356678876554
No 312
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=96.89 E-value=0.0029 Score=54.86 Aligned_cols=94 Identities=14% Similarity=0.240 Sum_probs=59.4
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEe-CCCHHHH-HHHHHcCceecc--CchhhccCCCEEEEeeCcccH
Q 024016 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAV-HSNLKRR-DAFESIGVKVLS--DNNAVVEYSDVVVFSVKPQVV 84 (274)
Q Consensus 10 ~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~-~r~~~~~-~~l~~~g~~~~~--~~~~~~~~aDiIil~v~~~~~ 84 (274)
++||||+|+ |.+|+.|.+.|.+..+ +-..+.++. .|+..+. -.+......+-. ......+++|++|.|.+.+.-
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f-~~~~~~~~AS~rSaG~~~~~f~~~~~~v~~~~~~~~~~~~~Divf~~ag~~~s 79 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHF-PFEELVLLASARSAGKKYIEFGGKSIGVPEDAADEFVFSDVDIVFFAAGGSVS 79 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCC-CcceEEEEecccccCCccccccCccccCccccccccccccCCEEEEeCchHHH
Confidence 368999965 9999999999988644 323344441 3433222 223322222222 122335689999999988877
Q ss_pred HHHHHHhccccCCCCEEEEecCC
Q 024016 85 KDVAMQIRPLLSRKKLLVSVAAG 107 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~~~g 107 (274)
+++..++. ..|.+|||.++.
T Consensus 80 ~~~~p~~~---~~G~~VIdnsSa 99 (334)
T COG0136 80 KEVEPKAA---EAGCVVIDNSSA 99 (334)
T ss_pred HHHHHHHH---HcCCEEEeCCcc
Confidence 77777765 467888887554
No 313
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=96.89 E-value=0.0046 Score=56.94 Aligned_cols=68 Identities=18% Similarity=0.298 Sum_probs=51.3
Q ss_pred CCCCCeEEEEcccHHHHH-HHHHHHhCCCCCCCcEEEEeCCCHH-HHHHHHHcCceec-cCchhhccCCCEEEEee
Q 024016 7 PAESFILGFIGAGKMAES-IAKGVAKSGVLPPDRICTAVHSNLK-RRDAFESIGVKVL-SDNNAVVEYSDVVVFSV 79 (274)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~-~a~~L~~~g~~~~~~v~v~~~r~~~-~~~~l~~~g~~~~-~~~~~~~~~aDiIil~v 79 (274)
.-+.++|.|||+|..|.+ +|+.|.+.|+ +|+++ |.++. ..+.|.+.|+.+. ....+.+.++|+||.+-
T Consensus 4 ~~~~~~v~viG~G~sG~s~~a~~L~~~G~----~V~~~-D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~sp 74 (461)
T PRK00421 4 LRRIKRIHFVGIGGIGMSGLAEVLLNLGY----KVSGS-DLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSS 74 (461)
T ss_pred cCCCCEEEEEEEchhhHHHHHHHHHhCCC----eEEEE-CCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECC
Confidence 335578999999999999 8999999999 99999 86542 3445666787653 22334566899998864
No 314
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.85 E-value=0.0047 Score=57.32 Aligned_cols=65 Identities=18% Similarity=0.186 Sum_probs=52.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceecc--CchhhccCCCEEEEee
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLS--DNNAVVEYSDVVVFSV 79 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~--~~~~~~~~aDiIil~v 79 (274)
.++|.|+|+|..|.+.++.|.+.|+ +|+++ |+++.+.+.+.+.|+.... ...+.++++|+||.+-
T Consensus 12 ~~~v~V~G~G~sG~aa~~~L~~~G~----~v~~~-D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~Sp 78 (488)
T PRK03369 12 GAPVLVAGAGVTGRAVLAALTRFGA----RPTVC-DDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSP 78 (488)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCCC----EEEEE-cCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECC
Confidence 4689999999999999999999998 99999 9887766666667876532 2334567899999875
No 315
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.85 E-value=0.0048 Score=52.68 Aligned_cols=73 Identities=12% Similarity=0.198 Sum_probs=56.2
Q ss_pred CCCCCeEEEEcccH-HHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee-CcccH
Q 024016 7 PAESFILGFIGAGK-MAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV-KPQVV 84 (274)
Q Consensus 7 ~~~~~~IgiIG~G~-mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v-~~~~~ 84 (274)
+...+++.|||-++ +|.+++.-|.+.|. .|+++ +... .+..+.+++||+||.++ .|..+
T Consensus 161 ~l~Gk~vvViGrs~iVGkPla~lL~~~~a----tVtv~-hs~T--------------~~l~~~~~~ADIvv~AvG~p~~i 221 (287)
T PRK14176 161 DIEGKNAVIVGHSNVVGKPMAAMLLNRNA----TVSVC-HVFT--------------DDLKKYTLDADILVVATGVKHLI 221 (287)
T ss_pred CCCCCEEEEECCCcccHHHHHHHHHHCCC----EEEEE-eccC--------------CCHHHHHhhCCEEEEccCCcccc
Confidence 44568999999999 99999999999887 99999 6321 24566788999999998 45543
Q ss_pred HHHHHHhccccCCCCEEEEe
Q 024016 85 KDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~ 104 (274)
.. ..+++|.+||++
T Consensus 222 ~~------~~vk~gavVIDv 235 (287)
T PRK14176 222 KA------DMVKEGAVIFDV 235 (287)
T ss_pred CH------HHcCCCcEEEEe
Confidence 21 246789999986
No 316
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=96.83 E-value=0.0056 Score=50.91 Aligned_cols=33 Identities=21% Similarity=0.327 Sum_probs=28.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCC
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS 46 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r 46 (274)
..||.|||+|.+|+.++++|...|. .+++++ |.
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gv---g~i~lv-D~ 53 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGV---GKLGLV-DD 53 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCC---CEEEEE-cC
Confidence 4699999999999999999999997 266666 44
No 317
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=96.83 E-value=0.0046 Score=44.88 Aligned_cols=81 Identities=15% Similarity=0.240 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH---HcCceeccCchhhccCCCEEEEeeCcccHHHH-HHHhccccC
Q 024016 21 MAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE---SIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDV-AMQIRPLLS 96 (274)
Q Consensus 21 mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~---~~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v-~~~i~~~l~ 96 (274)
-+..+++.|.+.|. +|.+| |..-....... ..+++..++..+..+++|.|+++++.+...++ .+++...+.
T Consensus 18 p~~~l~~~L~~~g~----~V~~~-DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h~~f~~l~~~~~~~~~~ 92 (106)
T PF03720_consen 18 PALELIEELKERGA----EVSVY-DPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATDHDEFRELDWEEIAKLMR 92 (106)
T ss_dssp HHHHHHHHHHHTT-----EEEEE--TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS--GGGGCCGHHHHHHHSC
T ss_pred HHHHHHHHHHHCCC----EEEEE-CCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEecCHHHhccCHHHHHHhcC
Confidence 35568899999998 99999 88665444333 25788888888999999999999987776652 345555566
Q ss_pred CCCEEEEecC
Q 024016 97 RKKLLVSVAA 106 (274)
Q Consensus 97 ~~~~vis~~~ 106 (274)
++++|+++-+
T Consensus 93 ~~~~iiD~~~ 102 (106)
T PF03720_consen 93 KPPVIIDGRN 102 (106)
T ss_dssp SSEEEEESSS
T ss_pred CCCEEEECcc
Confidence 7778887644
No 318
>PRK06153 hypothetical protein; Provisional
Probab=96.80 E-value=0.0064 Score=53.94 Aligned_cols=94 Identities=21% Similarity=0.237 Sum_probs=58.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC----------H------------HHHHHHHH----c--Ccee
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN----------L------------KRRDAFES----I--GVKV 61 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~----------~------------~~~~~l~~----~--g~~~ 61 (274)
..||+|||+|-.|+.++..|.+.|. .+++++ |.+ + .|++.+++ . ++..
T Consensus 176 ~~~VaIVG~GG~GS~Va~~LAR~GV---geI~LV-D~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~~I~~ 251 (393)
T PRK06153 176 GQRIAIIGLGGTGSYILDLVAKTPV---REIHLF-DGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRRGIVP 251 (393)
T ss_pred hCcEEEEcCCccHHHHHHHHHHcCC---CEEEEE-CCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCCeEEE
Confidence 4689999999999999999999996 256666 432 1 22332322 1 2322
Q ss_pred c-----cCchhhccCCCEEEEeeCcccHHHHHHHhccccCCCCEEEEecCCCC
Q 024016 62 L-----SDNNAVVEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 62 ~-----~~~~~~~~~aDiIil~v~~~~~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
. .+..+.+.++|+||.|+.....+.++.+.... .+..+|++.-++.
T Consensus 252 ~~~~I~~~n~~~L~~~DiV~dcvDn~~aR~~ln~~a~~--~gIP~Id~G~~l~ 302 (393)
T PRK06153 252 HPEYIDEDNVDELDGFTFVFVCVDKGSSRKLIVDYLEA--LGIPFIDVGMGLE 302 (393)
T ss_pred EeecCCHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHH--cCCCEEEeeecce
Confidence 1 12223567899999999877777766554422 3455776544443
No 319
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=96.80 E-value=0.019 Score=47.35 Aligned_cols=84 Identities=14% Similarity=0.182 Sum_probs=58.9
Q ss_pred CCCCCC--CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-HHHHHHHHc-CceeccC--chhhccCCCEEEE
Q 024016 4 FPIPAE--SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-KRRDAFESI-GVKVLSD--NNAVVEYSDVVVF 77 (274)
Q Consensus 4 ~~~~~~--~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~-~~~~~l~~~-g~~~~~~--~~~~~~~aDiIil 77 (274)
||...+ .++|.|||.|.++..=+..|++.|. +|+|+ .... +..+.+.+. .+++... ..+.++++++||.
T Consensus 17 ~pi~l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA----~VtVV-ap~i~~el~~l~~~~~i~~~~r~~~~~dl~g~~LVia 91 (223)
T PRK05562 17 MFISLLSNKIKVLIIGGGKAAFIKGKTFLKKGC----YVYIL-SKKFSKEFLDLKKYGNLKLIKGNYDKEFIKDKHLIVI 91 (223)
T ss_pred eeeEEECCCCEEEEECCCHHHHHHHHHHHhCCC----EEEEE-cCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCcEEEE
Confidence 444443 5689999999999999999999998 99999 6543 234445443 3433221 1234678999999
Q ss_pred eeCcccHHHHHHHhc
Q 024016 78 SVKPQVVKDVAMQIR 92 (274)
Q Consensus 78 ~v~~~~~~~v~~~i~ 92 (274)
|+.+..+..-+....
T Consensus 92 ATdD~~vN~~I~~~a 106 (223)
T PRK05562 92 ATDDEKLNNKIRKHC 106 (223)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999887776665554
No 320
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=96.80 E-value=0.0053 Score=53.03 Aligned_cols=81 Identities=6% Similarity=0.153 Sum_probs=55.4
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccHHHHHH
Q 024016 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVAM 89 (274)
Q Consensus 11 ~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v~~ 89 (274)
.||+|+|. |-.|.-+.+.|..+.++ ++.....++. ... .+..++.+++|++|+|+|.....++..
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~~---el~~l~s~~~----------~~~-~~~~~~~~~~D~vFlalp~~~s~~~~~ 67 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDDI---ELLSIAPDRR----------KDA-AERAKLLNAADVAILCLPDDAAREAVS 67 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCCe---EEEEEecccc----------cCc-CCHhHhhcCCCEEEECCCHHHHHHHHH
Confidence 48999976 99999999988776542 4433313321 111 134456678999999999998888777
Q ss_pred HhccccCCCCEEEEecCCC
Q 024016 90 QIRPLLSRKKLLVSVAAGV 108 (274)
Q Consensus 90 ~i~~~l~~~~~vis~~~g~ 108 (274)
.+. ..|..||+.++..
T Consensus 68 ~~~---~~g~~VIDlSadf 83 (310)
T TIGR01851 68 LVD---NPNTCIIDASTAY 83 (310)
T ss_pred HHH---hCCCEEEECChHH
Confidence 654 3677899886543
No 321
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=96.79 E-value=0.007 Score=49.13 Aligned_cols=34 Identities=24% Similarity=0.314 Sum_probs=29.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~ 47 (274)
..||.|||+|.+|+.++++|...|. .+++++ |.+
T Consensus 21 ~s~VlIiG~gglG~evak~La~~GV---g~i~lv-D~d 54 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVLSGI---GSLTIL-DDR 54 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHHHcCC---CEEEEE-ECC
Confidence 4689999999999999999999997 367777 544
No 322
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=96.78 E-value=0.0036 Score=48.89 Aligned_cols=73 Identities=18% Similarity=0.310 Sum_probs=49.8
Q ss_pred CCCCCeEEEEccc-HHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccH
Q 024016 7 PAESFILGFIGAG-KMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVV 84 (274)
Q Consensus 7 ~~~~~~IgiIG~G-~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~ 84 (274)
+.+.+++.|||-+ .+|.+++.-|.+.|. .|+++ +... .+..+.+++||+||.++. |..+
T Consensus 33 ~l~Gk~v~VvGrs~~VG~Pla~lL~~~~a----tVt~~-h~~T--------------~~l~~~~~~ADIVVsa~G~~~~i 93 (160)
T PF02882_consen 33 DLEGKKVVVVGRSNIVGKPLAMLLLNKGA----TVTIC-HSKT--------------KNLQEITRRADIVVSAVGKPNLI 93 (160)
T ss_dssp STTT-EEEEE-TTTTTHHHHHHHHHHTT-----EEEEE--TTS--------------SSHHHHHTTSSEEEE-SSSTT-B
T ss_pred CCCCCEEEEECCcCCCChHHHHHHHhCCC----eEEec-cCCC--------------CcccceeeeccEEeeeecccccc
Confidence 4566899999987 599999999999988 89888 5442 245667889999999995 4433
Q ss_pred HHHHHHhccccCCCCEEEEe
Q 024016 85 KDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~ 104 (274)
+ ...+++|.+||++
T Consensus 94 ~------~~~ik~gavVIDv 107 (160)
T PF02882_consen 94 K------ADWIKPGAVVIDV 107 (160)
T ss_dssp -------GGGS-TTEEEEE-
T ss_pred c------cccccCCcEEEec
Confidence 2 1246899999986
No 323
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.78 E-value=0.0056 Score=56.38 Aligned_cols=65 Identities=15% Similarity=0.237 Sum_probs=49.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH-----HHHHHHHcCceec--cCchhhccCCCEEEEee
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK-----RRDAFESIGVKVL--SDNNAVVEYSDVVVFSV 79 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~-----~~~~l~~~g~~~~--~~~~~~~~~aDiIil~v 79 (274)
.+||+|+|.|.-|.++++.|.+.|+ +|+++ |+++. ..+.+.+.|+.+. ....+.+.++|+||.+-
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G~----~V~~~-D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~Sp 85 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLGA----KVTAF-DKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKTP 85 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCCC----EEEEE-CCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEECC
Confidence 4689999999999999999999999 99999 87642 1245666787653 22234467899998873
No 324
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.76 E-value=0.0076 Score=51.45 Aligned_cols=73 Identities=19% Similarity=0.323 Sum_probs=55.3
Q ss_pred CCCCCeEEEEccc-HHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccH
Q 024016 7 PAESFILGFIGAG-KMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVV 84 (274)
Q Consensus 7 ~~~~~~IgiIG~G-~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~ 84 (274)
+...++|.|||-| .+|.+++.-|.+.|. .|+++ +.... +..+.+++||+||.++. |..+
T Consensus 154 ~l~Gk~vvVvGrs~~VG~Pla~lL~~~gA----tVtv~-hs~t~--------------~l~~~~~~ADIvV~AvG~p~~i 214 (285)
T PRK14191 154 EIKGKDVVIIGASNIVGKPLAMLMLNAGA----SVSVC-HILTK--------------DLSFYTQNADIVCVGVGKPDLI 214 (285)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCC----EEEEE-eCCcH--------------HHHHHHHhCCEEEEecCCCCcC
Confidence 4456899999999 999999999999987 89988 53321 23467889999999995 4433
Q ss_pred HHHHHHhccccCCCCEEEEe
Q 024016 85 KDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~ 104 (274)
.. .++++|.+||++
T Consensus 215 ~~------~~vk~GavVIDv 228 (285)
T PRK14191 215 KA------SMVKKGAVVVDI 228 (285)
T ss_pred CH------HHcCCCcEEEEe
Confidence 21 235799999986
No 325
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=96.75 E-value=0.0049 Score=54.64 Aligned_cols=92 Identities=12% Similarity=0.131 Sum_probs=58.3
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc-C--ceecc-CchhhccCCCEEEEeeCcccHH
Q 024016 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI-G--VKVLS-DNNAVVEYSDVVVFSVKPQVVK 85 (274)
Q Consensus 11 ~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~-g--~~~~~-~~~~~~~~aDiIil~v~~~~~~ 85 (274)
++|+|||+ |..|.-|.+.++++..++..++..+ ..+. ........ | ..+.. ...+...++|++|+|+|.....
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~-ss~~-sg~~~~~f~g~~~~v~~~~~~~~~~~~Divf~a~~~~~s~ 79 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFF-STSQ-AGGAAPSFGGKEGTLQDAFDIDALKKLDIIITCQGGDYTN 79 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEe-cchh-hCCcccccCCCcceEEecCChhHhcCCCEEEECCCHHHHH
Confidence 68999988 9999999986666554444446666 4332 22222221 1 22221 1123457899999999999888
Q ss_pred HHHHHhccccCCC--CEEEEecCC
Q 024016 86 DVAMQIRPLLSRK--KLLVSVAAG 107 (274)
Q Consensus 86 ~v~~~i~~~l~~~--~~vis~~~g 107 (274)
++..++.. .| .+||+.++.
T Consensus 80 ~~~~~~~~---aG~~~~VID~Ss~ 100 (369)
T PRK06598 80 EVYPKLRA---AGWQGYWIDAAST 100 (369)
T ss_pred HHHHHHHh---CCCCeEEEECChH
Confidence 88776643 45 568887654
No 326
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=96.74 E-value=0.012 Score=52.17 Aligned_cols=83 Identities=17% Similarity=0.197 Sum_probs=56.3
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeccCch---------hhc--cCCCEEEEee
Q 024016 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNN---------AVV--EYSDVVVFSV 79 (274)
Q Consensus 12 ~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~~~~~---------~~~--~~aDiIil~v 79 (274)
++.|+|+|.+|...+..+...|. .+|++. |+++++++..++ .|.....++. +.. ..+|++|-|+
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga---~~Viv~-d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~ 246 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGA---SVVIVV-DRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAV 246 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCC---ceEEEe-CCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECC
Confidence 79999999999987776666775 388899 999999988877 5655433321 122 2589999999
Q ss_pred C-cccHHHHHHHhccccCCCCEEE
Q 024016 80 K-PQVVKDVAMQIRPLLSRKKLLV 102 (274)
Q Consensus 80 ~-~~~~~~v~~~i~~~l~~~~~vi 102 (274)
- +..+.+.+ ..++++-.++
T Consensus 247 G~~~~~~~ai----~~~r~gG~v~ 266 (350)
T COG1063 247 GSPPALDQAL----EALRPGGTVV 266 (350)
T ss_pred CCHHHHHHHH----HHhcCCCEEE
Confidence 6 22233333 3344554444
No 327
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=96.74 E-value=0.0075 Score=50.71 Aligned_cols=33 Identities=15% Similarity=0.210 Sum_probs=28.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCC
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS 46 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r 46 (274)
..||.|||+|.+|+.++++|...|. .+++++ |.
T Consensus 32 ~~~VliiG~GglGs~va~~La~~Gv---g~i~lv-D~ 64 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAAGV---GTLTLV-DF 64 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---CEEEEE-cC
Confidence 4699999999999999999999996 266666 54
No 328
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=96.73 E-value=0.0082 Score=53.80 Aligned_cols=35 Identities=23% Similarity=0.264 Sum_probs=30.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~ 47 (274)
+..||.|||+|.+|+.++..|...|. .+++++ |++
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gv---g~i~lv-D~d 168 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGV---GTLGIV-DHD 168 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCC---CeEEEE-eCC
Confidence 34689999999999999999999997 378888 776
No 329
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=96.72 E-value=0.0089 Score=50.08 Aligned_cols=35 Identities=14% Similarity=0.203 Sum_probs=29.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~ 48 (274)
..||.|+|+|.+|+.++..|...|. .+++++ |.+.
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gv---g~i~lv-D~D~ 58 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGV---GNLTLL-DFDT 58 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCC---CEEEEE-eCCc
Confidence 4689999999999999999999996 367777 6543
No 330
>PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D ....
Probab=96.68 E-value=0.016 Score=43.14 Aligned_cols=89 Identities=20% Similarity=0.178 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHHHHHHHH-------Hh
Q 024016 183 PAYIFLAIEALADG---GVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHEL-------EK 252 (274)
Q Consensus 183 ~~~~~~~~~~l~e~---~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~l~~l-------~~ 252 (274)
+.+++..+.++.|+ +++.|+|++++++++..+..++..+-. ..|..+.+..+.|++......+.+ ++
T Consensus 11 N~l~~~~~~~~aEa~~la~~~Gld~~~~~~vl~~~~~~s~~~~~---~~~~~~~~~~~~~~f~l~~~~KDl~l~~~~a~~ 87 (122)
T PF14833_consen 11 NLLIAANMAALAEALALAEKAGLDPEQLLDVLSAGSGGSWMLKN---RAPRMILNGDFDPGFSLDLARKDLRLALDLAKE 87 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHTSTTHBHHHHH---HHHHHHHTTTTCSSSBHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHccCCcCchHHHh---hhhhhhhcccCCccchhHhhccHHHHHHHHHHH
Confidence 34444455556665 579999999999999988777654432 234457777789998877765554 55
Q ss_pred CCHHHHHHHHHHHHHHHHhhcC
Q 024016 253 SGFRGILMNAVVAAAKRSRELS 274 (274)
Q Consensus 253 ~~~~~~~~~a~~~~~~r~~~~~ 274 (274)
.+++-.+.+++.+.|+++.+.+
T Consensus 88 ~g~~~p~~~~~~~~~~~a~~~g 109 (122)
T PF14833_consen 88 AGVPLPLGSAARQLYQAAKAQG 109 (122)
T ss_dssp TT---HHHHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHHHHHhcC
Confidence 6999999999999999988653
No 331
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=96.67 E-value=0.0091 Score=51.27 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=21.9
Q ss_pred eEEEEcccHHHHHHHHHHHhCCC
Q 024016 12 ILGFIGAGKMAESIAKGVAKSGV 34 (274)
Q Consensus 12 ~IgiIG~G~mG~~~a~~L~~~g~ 34 (274)
||.|||+|.+|+.+++.|...|.
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGV 23 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGV 23 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC
Confidence 68999999999999999999996
No 332
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=96.66 E-value=0.015 Score=47.21 Aligned_cols=34 Identities=32% Similarity=0.467 Sum_probs=29.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~ 47 (274)
..||.|||+|.+|+.++++|...|. .+++++ |.+
T Consensus 19 ~s~VlviG~gglGsevak~L~~~GV---g~i~lv-D~d 52 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAGI---DSITIV-DHR 52 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcCC---CEEEEE-ECC
Confidence 4689999999999999999999997 367777 544
No 333
>PRK08328 hypothetical protein; Provisional
Probab=96.64 E-value=0.014 Score=48.70 Aligned_cols=41 Identities=20% Similarity=0.299 Sum_probs=33.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHH
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF 54 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l 54 (274)
..||.|||+|..|+.++.+|...|. .+++++ |.+.-....+
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~Gv---g~i~lv-D~D~ve~sNL 67 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGV---GRILLI-DEQTPELSNL 67 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCC---CEEEEE-cCCccChhhh
Confidence 4689999999999999999999997 378888 7765443333
No 334
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=96.62 E-value=0.011 Score=52.53 Aligned_cols=79 Identities=19% Similarity=0.197 Sum_probs=52.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-------------------HHHHH----HHH--cCceec--
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-------------------KRRDA----FES--IGVKVL-- 62 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~-------------------~~~~~----l~~--~g~~~~-- 62 (274)
..||.|||+|.+|+.++.+|...|. .+++++ |.+. .|++. +.+ ..+.+.
T Consensus 28 ~~~VlivG~GGlGs~~a~~La~~Gv---g~i~lv-D~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~ 103 (355)
T PRK05597 28 DAKVAVIGAGGLGSPALLYLAGAGV---GHITII-DDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVS 103 (355)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---CeEEEE-eCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEE
Confidence 4699999999999999999999997 367776 5543 12222 222 223221
Q ss_pred ------cCchhhccCCCEEEEeeCcccHHHHHHHhc
Q 024016 63 ------SDNNAVVEYSDVVVFSVKPQVVKDVAMQIR 92 (274)
Q Consensus 63 ------~~~~~~~~~aDiIil~v~~~~~~~v~~~i~ 92 (274)
.+..+.++++|+||.|+.....+.++....
T Consensus 104 ~~~i~~~~~~~~~~~~DvVvd~~d~~~~r~~~n~~c 139 (355)
T PRK05597 104 VRRLTWSNALDELRDADVILDGSDNFDTRHLASWAA 139 (355)
T ss_pred EeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 112356789999999997666666665543
No 335
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=96.57 E-value=0.016 Score=44.23 Aligned_cols=71 Identities=11% Similarity=0.122 Sum_probs=41.1
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccHHHHH
Q 024016 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVA 88 (274)
Q Consensus 10 ~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v~ 88 (274)
.++|.|+|- ...|..++..|.+.|. .|+++ +++. .+..+.+++||+|+.++....+ +
T Consensus 28 gk~v~VvGrs~~vG~pla~lL~~~ga----tV~~~-~~~t--------------~~l~~~v~~ADIVvsAtg~~~~---i 85 (140)
T cd05212 28 GKKVLVVGRSGIVGAPLQCLLQRDGA----TVYSC-DWKT--------------IQLQSKVHDADVVVVGSPKPEK---V 85 (140)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC----EEEEe-CCCC--------------cCHHHHHhhCCEEEEecCCCCc---c
Confidence 345555543 3445555555554444 45444 3221 1556788999999999953322 2
Q ss_pred HHhccccCCCCEEEEe
Q 024016 89 MQIRPLLSRKKLLVSV 104 (274)
Q Consensus 89 ~~i~~~l~~~~~vis~ 104 (274)
+ ...+++|.+++++
T Consensus 86 ~--~~~ikpGa~Vidv 99 (140)
T cd05212 86 P--TEWIKPGATVINC 99 (140)
T ss_pred C--HHHcCCCCEEEEc
Confidence 1 1246899998876
No 336
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=96.56 E-value=0.014 Score=50.30 Aligned_cols=91 Identities=16% Similarity=0.210 Sum_probs=66.8
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCc-EEEEeCCC--HHHHHHHHHcCceeccCchhhccC--CCEEEEeeCcc
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDR-ICTAVHSN--LKRRDAFESIGVKVLSDNNAVVEY--SDVVVFSVKPQ 82 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~-v~v~~~r~--~~~~~~l~~~g~~~~~~~~~~~~~--aDiIil~v~~~ 82 (274)
++.||.|.|. |.+|..+.++|.+.|+ + ++.. ++. .+.. .|+..+.+..++-+. .|+.++++|++
T Consensus 7 ~~~~~~v~~~~~~~g~~~l~~l~~~g~----~~v~pV-np~~~~~~v-----~G~~~y~sv~dlp~~~~~DlAvi~vp~~ 76 (291)
T PRK05678 7 KDTKVIVQGITGKQGTFHTEQMLAYGT----NIVGGV-TPGKGGTTV-----LGLPVFNTVAEAVEATGANASVIYVPPP 76 (291)
T ss_pred CCCeEEEeCCCchHHHHHHHHHHHCCC----CEEEEE-CCCCCCCeE-----eCeeccCCHHHHhhccCCCEEEEEcCHH
Confidence 3568999998 8899999999999888 4 3344 554 2221 488888888887776 89999999999
Q ss_pred cHHHHHHHhccccCCCCEEEEecCCCCHH
Q 024016 83 VVKDVAMQIRPLLSRKKLLVSVAAGVKLK 111 (274)
Q Consensus 83 ~~~~v~~~i~~~l~~~~~vis~~~g~~~~ 111 (274)
.+.+++++....- - +.+|-.++|...+
T Consensus 77 ~v~~~l~e~~~~g-v-k~avI~s~Gf~~~ 103 (291)
T PRK05678 77 FAADAILEAIDAG-I-DLIVCITEGIPVL 103 (291)
T ss_pred HHHHHHHHHHHCC-C-CEEEEECCCCCHH
Confidence 9999998865421 2 2333355777654
No 337
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.56 E-value=0.01 Score=54.45 Aligned_cols=66 Identities=18% Similarity=0.180 Sum_probs=48.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH----HHHHHHHcCceec--cCchhhccC-CCEEEEee
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK----RRDAFESIGVKVL--SDNNAVVEY-SDVVVFSV 79 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~----~~~~l~~~g~~~~--~~~~~~~~~-aDiIil~v 79 (274)
+.++|.|+|.|.+|.++++.|.+.|+ +|+++ +++.. ..+.+.+.|+.+. .+..+...+ +|+||..-
T Consensus 4 ~~k~v~v~G~g~~G~s~a~~l~~~G~----~V~~~-d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~ 76 (447)
T PRK02472 4 QNKKVLVLGLAKSGYAAAKLLHKLGA----NVTVN-DGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNP 76 (447)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHHCCC----EEEEE-cCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECC
Confidence 35689999999999999999999999 99999 87642 2244555676653 234444444 89888864
No 338
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=96.55 E-value=0.014 Score=52.04 Aligned_cols=79 Identities=16% Similarity=0.201 Sum_probs=53.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-------------------HHHHHHH----H--cCcee--c
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-------------------KRRDAFE----S--IGVKV--L 62 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~-------------------~~~~~l~----~--~g~~~--~ 62 (274)
..+|.|||+|.+|+.++..|...|. .+++++ |.+. .|++.++ + ..+++ .
T Consensus 41 ~~~VliiG~GglG~~v~~~La~~Gv---g~i~iv-D~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~ 116 (370)
T PRK05600 41 NARVLVIGAGGLGCPAMQSLASAGV---GTITLI-DDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNAL 116 (370)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCC---CEEEEE-eCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEe
Confidence 4689999999999999999999996 267777 5541 1222222 2 12221 1
Q ss_pred ------cCchhhccCCCEEEEeeCcccHHHHHHHhc
Q 024016 63 ------SDNNAVVEYSDVVVFSVKPQVVKDVAMQIR 92 (274)
Q Consensus 63 ------~~~~~~~~~aDiIil~v~~~~~~~v~~~i~ 92 (274)
.+..+.++++|+||-|+.....+.++.++.
T Consensus 117 ~~~i~~~~~~~~~~~~DlVid~~Dn~~~r~~in~~~ 152 (370)
T PRK05600 117 RERLTAENAVELLNGVDLVLDGSDSFATKFLVADAA 152 (370)
T ss_pred eeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 123456788999999998776666666554
No 339
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=96.49 E-value=0.0093 Score=55.84 Aligned_cols=44 Identities=23% Similarity=0.417 Sum_probs=39.5
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES 56 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~ 56 (274)
++.+++.|+|+|.+|.+++..|.+.|. +|+++ +|+.++++.+.+
T Consensus 377 ~~~k~vlIlGaGGagrAia~~L~~~G~----~V~i~-nR~~e~a~~la~ 420 (529)
T PLN02520 377 LAGKLFVVIGAGGAGKALAYGAKEKGA----RVVIA-NRTYERAKELAD 420 (529)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCC----EEEEE-cCCHHHHHHHHH
Confidence 445789999999999999999999998 99999 999999888875
No 340
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=96.48 E-value=0.0051 Score=49.07 Aligned_cols=72 Identities=19% Similarity=0.270 Sum_probs=47.2
Q ss_pred eEEEEcccHHHHHH--HHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH--------cC----ceeccCchhhccCCCEEEE
Q 024016 12 ILGFIGAGKMAESI--AKGVAKSGVLPPDRICTAVHSNLKRRDAFES--------IG----VKVLSDNNAVVEYSDVVVF 77 (274)
Q Consensus 12 ~IgiIG~G~mG~~~--a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~--------~g----~~~~~~~~~~~~~aDiIil 77 (274)
||+|||+|..-.+. ..-+.....++..+|.++ |+++++++...+ .| +..++|..+++++||.||.
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~-Did~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~gADfVi~ 79 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLM-DIDEERLEIVERLARRMVEEAGADLKVEATTDRREALEGADFVIN 79 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE--SCHHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHHHTTESEEEE
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEE-cCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhCCCCEEEE
Confidence 79999999876553 333333333445588999 999998764322 23 3456888999999999999
Q ss_pred eeCcccH
Q 024016 78 SVKPQVV 84 (274)
Q Consensus 78 ~v~~~~~ 84 (274)
++...-.
T Consensus 80 ~irvGg~ 86 (183)
T PF02056_consen 80 QIRVGGL 86 (183)
T ss_dssp ---TTHH
T ss_pred Eeeecch
Confidence 9976543
No 341
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=96.48 E-value=0.0079 Score=50.87 Aligned_cols=71 Identities=18% Similarity=0.353 Sum_probs=55.6
Q ss_pred CCCeEEEEcccH-HHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee-CcccHHH
Q 024016 9 ESFILGFIGAGK-MAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV-KPQVVKD 86 (274)
Q Consensus 9 ~~~~IgiIG~G~-mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v-~~~~~~~ 86 (274)
..+++.|||-++ +|.+|+.-|++.++ .|+++ ++.. .+..+.+++||+++.++ +|..+.
T Consensus 155 ~Gk~~vVVGrS~iVGkPla~lL~~~na----TVtvc-Hs~T--------------~~l~~~~k~ADIvv~AvG~p~~i~- 214 (283)
T COG0190 155 RGKNVVVVGRSNIVGKPLALLLLNANA----TVTVC-HSRT--------------KDLASITKNADIVVVAVGKPHFIK- 214 (283)
T ss_pred CCCEEEEECCCCcCcHHHHHHHHhCCC----EEEEE-cCCC--------------CCHHHHhhhCCEEEEecCCccccc-
Confidence 457899999876 59999999999888 99999 5432 24566788999999999 566554
Q ss_pred HHHHhccccCCCCEEEEe
Q 024016 87 VAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 87 v~~~i~~~l~~~~~vis~ 104 (274)
.+.+++|.++|++
T Consensus 215 -----~d~vk~gavVIDV 227 (283)
T COG0190 215 -----ADMVKPGAVVIDV 227 (283)
T ss_pred -----cccccCCCEEEec
Confidence 3456899999986
No 342
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.47 E-value=0.012 Score=54.45 Aligned_cols=66 Identities=21% Similarity=0.268 Sum_probs=48.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH-H----HHHHHHcCceeccC-chhhccCCCEEEEee
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK-R----RDAFESIGVKVLSD-NNAVVEYSDVVVFSV 79 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~-~----~~~l~~~g~~~~~~-~~~~~~~aDiIil~v 79 (274)
..++|.|||.|..|.++|..|.+.|+ +|+++ ++++. . .+.+.+.|+.+... ..+....+|+||++.
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~----~V~~~-d~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~D~Vv~s~ 86 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGA----RVTVV-DDGDDERHRALAAILEALGATVRLGPGPTLPEDTDLVVTSP 86 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-eCCchhhhHHHHHHHHHcCCEEEECCCccccCCCCEEEECC
Confidence 45689999999999999999999999 99999 85542 2 23455578776422 122345699999986
No 343
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=96.46 E-value=0.032 Score=47.20 Aligned_cols=86 Identities=15% Similarity=0.181 Sum_probs=58.9
Q ss_pred CCCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---Cc
Q 024016 6 IPAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KP 81 (274)
Q Consensus 6 ~~~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~ 81 (274)
.+++++++-|-|+ +.+|..+|+.|.++|+ +|++. .|+.++++++++. ..+.. ..++-++.+ .+
T Consensus 2 ~~~~~~~~lITGASsGIG~~~A~~lA~~g~----~liLv-aR~~~kL~~la~~-------l~~~~-~v~v~vi~~DLs~~ 68 (265)
T COG0300 2 GPMKGKTALITGASSGIGAELAKQLARRGY----NLILV-ARREDKLEALAKE-------LEDKT-GVEVEVIPADLSDP 68 (265)
T ss_pred CCCCCcEEEEECCCchHHHHHHHHHHHCCC----EEEEE-eCcHHHHHHHHHH-------HHHhh-CceEEEEECcCCCh
Confidence 4556678888887 9999999999999999 99999 9999999888751 11100 122333333 46
Q ss_pred ccHHHHHHHhccccCCCCEEEEe
Q 024016 82 QVVKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 82 ~~~~~v~~~i~~~l~~~~~vis~ 104 (274)
+.+..+..++.....+=.++|..
T Consensus 69 ~~~~~l~~~l~~~~~~IdvLVNN 91 (265)
T COG0300 69 EALERLEDELKERGGPIDVLVNN 91 (265)
T ss_pred hHHHHHHHHHHhcCCcccEEEEC
Confidence 67777777776542233466754
No 344
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.44 E-value=0.011 Score=55.06 Aligned_cols=68 Identities=19% Similarity=0.308 Sum_probs=49.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH--HHHHHHHc--Cceecc--CchhhccCCCEEEEe--eC
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK--RRDAFESI--GVKVLS--DNNAVVEYSDVVVFS--VK 80 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~--~~~~l~~~--g~~~~~--~~~~~~~~aDiIil~--v~ 80 (274)
+.++|.|+|.|..|.++|+.|.+.|+ +|+++ |.+.. ..+.|.+. |+.+.. ...+.+.++|+||.. +|
T Consensus 6 ~~~~i~v~G~G~sG~s~a~~L~~~G~----~v~~~-D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~sp~I~ 80 (498)
T PRK02006 6 QGPMVLVLGLGESGLAMARWCARHGA----RLRVA-DTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALSPGLS 80 (498)
T ss_pred CCCEEEEEeecHhHHHHHHHHHHCCC----EEEEE-cCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEECCCCC
Confidence 35689999999999999999999999 99999 86542 33446554 544322 234456789999987 45
Q ss_pred c
Q 024016 81 P 81 (274)
Q Consensus 81 ~ 81 (274)
+
T Consensus 81 ~ 81 (498)
T PRK02006 81 P 81 (498)
T ss_pred C
Confidence 4
No 345
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.44 E-value=0.012 Score=56.52 Aligned_cols=67 Identities=24% Similarity=0.325 Sum_probs=50.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH---------------------HHHHHHHcCceecc----
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK---------------------RRDAFESIGVKVLS---- 63 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~---------------------~~~~l~~~g~~~~~---- 63 (274)
..+||.|||.|..|.+.|..|.+.|+ +|++| ++.+. ..+.+.+.|+.+..
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~----~Vtv~-e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v 383 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGV----QVDVF-DRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEI 383 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCC----cEEEE-eCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCcc
Confidence 46799999999999999999999999 99999 87752 23445556765421
Q ss_pred ----CchhhccCCCEEEEeeC
Q 024016 64 ----DNNAVVEYSDVVVFSVK 80 (274)
Q Consensus 64 ----~~~~~~~~aDiIil~v~ 80 (274)
+..+.....|.||+++-
T Consensus 384 ~~~~~~~~l~~~~DaV~latG 404 (639)
T PRK12809 384 GRDITFSDLTSEYDAVFIGVG 404 (639)
T ss_pred CCcCCHHHHHhcCCEEEEeCC
Confidence 12244567899999984
No 346
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.44 E-value=0.012 Score=50.11 Aligned_cols=73 Identities=14% Similarity=0.280 Sum_probs=55.6
Q ss_pred CCCCCeEEEEccc-HHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccH
Q 024016 7 PAESFILGFIGAG-KMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVV 84 (274)
Q Consensus 7 ~~~~~~IgiIG~G-~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~ 84 (274)
+...+++.|||-+ .+|.+++.-|.+.|. .|+++ +... .+..+.+++||+||.++. |..+
T Consensus 154 ~l~Gk~vvViGrS~~VG~Pla~lL~~~~A----tVti~-hs~T--------------~~l~~~~~~ADIvV~AvGkp~~i 214 (281)
T PRK14183 154 DVKGKDVCVVGASNIVGKPMAALLLNANA----TVDIC-HIFT--------------KDLKAHTKKADIVIVGVGKPNLI 214 (281)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCC----EEEEe-CCCC--------------cCHHHHHhhCCEEEEecCccccc
Confidence 4456899999998 899999999998887 89988 5321 234567899999999994 5543
Q ss_pred HHHHHHhccccCCCCEEEEe
Q 024016 85 KDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~ 104 (274)
.. ..+++|.+||++
T Consensus 215 ~~------~~vk~gavvIDv 228 (281)
T PRK14183 215 TE------DMVKEGAIVIDI 228 (281)
T ss_pred CH------HHcCCCcEEEEe
Confidence 21 236799999986
No 347
>PRK10637 cysG siroheme synthase; Provisional
Probab=96.39 E-value=0.025 Score=52.07 Aligned_cols=83 Identities=17% Similarity=0.296 Sum_probs=59.2
Q ss_pred CCCCCCCC--CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-HHHHHHHHcC-ceeccC--chhhccCCCE
Q 024016 1 MDAFPIPA--ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-KRRDAFESIG-VKVLSD--NNAVVEYSDV 74 (274)
Q Consensus 1 ~~~~~~~~--~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~-~~~~~l~~~g-~~~~~~--~~~~~~~aDi 74 (274)
|..+|... +.++|.|||.|.++..=++.|++.|. +|+++ .+.- +..+.+.+.| ++.... ..+.++++++
T Consensus 1 m~~~P~~~~l~~~~vlvvGgG~vA~rk~~~ll~~ga----~v~vi-sp~~~~~~~~l~~~~~i~~~~~~~~~~dl~~~~l 75 (457)
T PRK10637 1 MDHLPIFCQLRDRDCLLVGGGDVAERKARLLLDAGA----RLTVN-ALAFIPQFTAWADAGMLTLVEGPFDESLLDTCWL 75 (457)
T ss_pred CCeeceEEEcCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-cCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCEE
Confidence 67788774 56899999999999999999999998 99999 6543 2344444433 333221 2345789999
Q ss_pred EEEeeCcccHHHHH
Q 024016 75 VVFSVKPQVVKDVA 88 (274)
Q Consensus 75 Iil~v~~~~~~~v~ 88 (274)
||.|+.+..+..-+
T Consensus 76 v~~at~d~~~n~~i 89 (457)
T PRK10637 76 AIAATDDDAVNQRV 89 (457)
T ss_pred EEECCCCHHHhHHH
Confidence 99999876654433
No 348
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.38 E-value=0.013 Score=49.89 Aligned_cols=75 Identities=12% Similarity=0.196 Sum_probs=56.7
Q ss_pred CCCCCCeEEEEccc-HHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-ccc
Q 024016 6 IPAESFILGFIGAG-KMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQV 83 (274)
Q Consensus 6 ~~~~~~~IgiIG~G-~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~ 83 (274)
.+...+++.|||-+ ..|.+++..|.+.|. .|+++ .++. .+..+.+++||+||.+++ +..
T Consensus 148 i~l~Gk~V~ViGrs~~vGrpla~lL~~~~a----tVtv~-hs~t--------------~~L~~~~~~ADIvI~Avgk~~l 208 (279)
T PRK14178 148 ISIAGKRAVVVGRSIDVGRPMAALLLNADA----TVTIC-HSKT--------------ENLKAELRQADILVSAAGKAGF 208 (279)
T ss_pred CCCCCCEEEEECCCccccHHHHHHHHhCCC----eeEEE-ecCh--------------hHHHHHHhhCCEEEECCCcccc
Confidence 34566899999998 999999999988887 89888 6543 245567889999999996 433
Q ss_pred HHHHHHHhccccCCCCEEEEec
Q 024016 84 VKDVAMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 84 ~~~v~~~i~~~l~~~~~vis~~ 105 (274)
+. .+ .+++|.+||++.
T Consensus 209 v~---~~---~vk~GavVIDVg 224 (279)
T PRK14178 209 IT---PD---MVKPGATVIDVG 224 (279)
T ss_pred cC---HH---HcCCCcEEEEee
Confidence 22 12 258999999873
No 349
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=96.33 E-value=0.034 Score=49.20 Aligned_cols=86 Identities=13% Similarity=0.153 Sum_probs=58.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCC---CHHHHHHHHHcCceeccCchh------hccCCCEEEEeeC
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS---NLKRRDAFESIGVKVLSDNNA------VVEYSDVVVFSVK 80 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r---~~~~~~~l~~~g~~~~~~~~~------~~~~aDiIil~v~ 80 (274)
..+|.|+|+|.+|...++.+...|. +|+++ +| ++++.+.+.+.|+.......+ .....|+||-|+.
T Consensus 173 g~~vlI~G~G~vG~~a~q~ak~~G~----~vi~~-~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~g 247 (355)
T cd08230 173 PRRALVLGAGPIGLLAALLLRLRGF----EVYVL-NRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEATG 247 (355)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC----eEEEE-ecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEECcC
Confidence 4589999999999999988888887 88888 87 677887777788764322111 1235789999886
Q ss_pred c-ccHHHHHHHhccccCCCCEEEEe
Q 024016 81 P-QVVKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 81 ~-~~~~~v~~~i~~~l~~~~~vis~ 104 (274)
. ..+.+.+.- ++++..++.+
T Consensus 248 ~~~~~~~~~~~----l~~~G~~v~~ 268 (355)
T cd08230 248 VPPLAFEALPA----LAPNGVVILF 268 (355)
T ss_pred CHHHHHHHHHH----ccCCcEEEEE
Confidence 4 334444433 4455555543
No 350
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.27 E-value=0.016 Score=55.88 Aligned_cols=67 Identities=24% Similarity=0.365 Sum_probs=49.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH---------------------HHHHHHHcCceecc----
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK---------------------RRDAFESIGVKVLS---- 63 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~---------------------~~~~l~~~g~~~~~---- 63 (274)
..++|.|||.|..|.+.|..|.+.|+ +|+++ ++.+. ..+.+.+.|+.+..
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~----~V~V~-E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v 400 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGV----AVTVY-DRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEV 400 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC----eEEEE-ecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEe
Confidence 45799999999999999999999999 99999 87542 23334446765432
Q ss_pred ----CchhhccCCCEEEEeeC
Q 024016 64 ----DNNAVVEYSDVVVFSVK 80 (274)
Q Consensus 64 ----~~~~~~~~aDiIil~v~ 80 (274)
+..+....+|.||+++-
T Consensus 401 ~~~i~~~~~~~~~DavilAtG 421 (654)
T PRK12769 401 GKDISLESLLEDYDAVFVGVG 421 (654)
T ss_pred CCcCCHHHHHhcCCEEEEeCC
Confidence 11233457899999883
No 351
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=96.27 E-value=0.0098 Score=51.58 Aligned_cols=66 Identities=17% Similarity=0.200 Sum_probs=48.9
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHH---HHHHHc-C----ce-------eccCchhhccCC
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRR---DAFESI-G----VK-------VLSDNNAVVEYS 72 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~---~~l~~~-g----~~-------~~~~~~~~~~~a 72 (274)
..++|.|-|+ |-+|+.+++.|++.|| .|... -|+++.- +.|.+. + .. -..+..+++++|
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY----~V~gt-VR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gc 79 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGY----TVRGT-VRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGC 79 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCC----EEEEE-EcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhCC
Confidence 4579999976 9999999999999999 99988 7877652 234441 1 22 124456788999
Q ss_pred CEEEEee
Q 024016 73 DVVVFSV 79 (274)
Q Consensus 73 DiIil~v 79 (274)
|.||=+-
T Consensus 80 dgVfH~A 86 (327)
T KOG1502|consen 80 DGVFHTA 86 (327)
T ss_pred CEEEEeC
Confidence 9999654
No 352
>COG4408 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.27 E-value=0.17 Score=43.78 Aligned_cols=152 Identities=16% Similarity=0.208 Sum_probs=91.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH---cC------------------ce---eccC
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES---IG------------------VK---VLSD 64 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~---~g------------------~~---~~~~ 64 (274)
++.++-++|+|...--+|.-|...|. .++-++ +|-..+-+.+.+ .+ +. ...+
T Consensus 3 ~m~~vLllGtGpvaIQlAv~l~~h~d---~~lg~~-~r~s~rse~l~qala~~~ql~l~~q~eahr~leg~~~id~~~kd 78 (431)
T COG4408 3 NMLPVLLLGTGPVAIQLAVDLSAHGD---ARLGLY-NRPSTRSERLKQALALTPQLYLQGQGEAHRQLEGSVTIDCYIKD 78 (431)
T ss_pred cccceeEeecCcHHHHHHHHHHhccC---ceeecc-CCCCchhHHHHHHHhcCCeEEEEeccHHHHhhcCceehhHHHhh
Confidence 56789999999999999999988875 377788 764433333332 11 00 1234
Q ss_pred chhhccCCCEEEEeeCcccHHHHHHHhcc-ccCCCCEEEEecCCCCHH----HHHHhhC-CCceEEEc------------
Q 024016 65 NNAVVEYSDVVVFSVKPQVVKDVAMQIRP-LLSRKKLLVSVAAGVKLK----DLQEWTG-HSRFIRVM------------ 126 (274)
Q Consensus 65 ~~~~~~~aDiIil~v~~~~~~~v~~~i~~-~l~~~~~vis~~~g~~~~----~l~~~~~-~~~~~~~~------------ 126 (274)
++++..+-+.+|+|||.++..+|+++|.. .++.=+.+|-++..+... .+....+ ++.++++.
T Consensus 79 ~a~~~~dwqtlilav~aDaY~dvlqqi~~e~L~~vk~viLiSptfGsn~lv~~~mnk~~~daeViS~SsY~~dTk~id~~ 158 (431)
T COG4408 79 LAQAVGDWQTLILAVPADAYYDVLQQIPWEALPQVKSVILISPTFGSNLLVQNLMNKAGRDAEVISLSSYYADTKYIDAE 158 (431)
T ss_pred HHHhhchhheEEEEeecHHHHHHHhcCCHhHhccccEEEEecccccccHHHHHHHhhhCCCceEEEeehhcccceeeccc
Confidence 55666778999999999999999988753 233323444333444332 2222222 34455432
Q ss_pred -CCcHHhhcCCceEEecCCCCCHHHHHHHHHHhhhcCCe
Q 024016 127 -PNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKI 164 (274)
Q Consensus 127 -p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~g~~ 164 (274)
|++.-...--.-++......+....+.+..+|+..|..
T Consensus 159 ~p~~alTkavKkriYlgs~~~ns~~~e~l~~v~aq~~I~ 197 (431)
T COG4408 159 QPNRALTKAVKKRIYLGSQHGNSGSAEMLTAVLAQHGID 197 (431)
T ss_pred CcchHHHHHHhHheeeccCCCCChHHHHHHHHHHhcCCc
Confidence 23221111111233334455677788899999999964
No 353
>PLN02775 Probable dihydrodipicolinate reductase
Probab=96.24 E-value=0.056 Score=46.14 Aligned_cols=109 Identities=20% Similarity=0.268 Sum_probs=69.7
Q ss_pred CCCCCCCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHH---HHHHcCceec--cCchhhc-----c
Q 024016 2 DAFPIPAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD---AFESIGVKVL--SDNNAVV-----E 70 (274)
Q Consensus 2 ~~~~~~~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~---~l~~~g~~~~--~~~~~~~-----~ 70 (274)
+++|.+....||.|.|+ |+||+..++.+.+.++ ++....++.+.-.+ .+...++.+. ++..+.+ +
T Consensus 3 ~~~~~~~~~i~V~V~Ga~G~MG~~~~~av~~~~~----~Lv~~~~~~~~~~~~~~~~~g~~v~~~~~~dl~~~l~~~~~~ 78 (286)
T PLN02775 3 STASPPGSAIPIMVNGCTGKMGHAVAEAAVSAGL----QLVPVSFTGPAGVGVTVEVCGVEVRLVGPSEREAVLSSVKAE 78 (286)
T ss_pred CcCCCcCCCCeEEEECCCChHHHHHHHHHhcCCC----EEEEEeccccccccccceeccceeeeecCccHHHHHHHhhcc
Confidence 45666666789999998 9999999999998777 76655365543211 1222245555 6666655 2
Q ss_pred CCC-EEEEeeCcccHHHHHHHhccccCCCCEEEEecCCCCHHHHHHhh
Q 024016 71 YSD-VVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWT 117 (274)
Q Consensus 71 ~aD-iIil~v~~~~~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~ 117 (274)
.+| ++|=-+.|+.+.+.+..... .+..+|.-+.|.+.+.++++.
T Consensus 79 ~~~~VvIDFT~P~a~~~~~~~~~~---~g~~~VvGTTG~~~e~l~~~~ 123 (286)
T PLN02775 79 YPNLIVVDYTLPDAVNDNAELYCK---NGLPFVMGTTGGDRDRLLKDV 123 (286)
T ss_pred CCCEEEEECCChHHHHHHHHHHHH---CCCCEEEECCCCCHHHHHHHH
Confidence 478 66666677777776665443 233344445677777766554
No 354
>PRK09242 tropinone reductase; Provisional
Probab=96.23 E-value=0.044 Score=45.99 Aligned_cols=91 Identities=10% Similarity=0.009 Sum_probs=57.9
Q ss_pred CCCCCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---
Q 024016 4 FPIPAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV--- 79 (274)
Q Consensus 4 ~~~~~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v--- 79 (274)
+++.++.+++-|.|+ |.+|..+++.|.+.|+ +|++. +|++++.+++.+.- .+...+.++.++.+
T Consensus 3 ~~~~~~~k~~lItGa~~gIG~~~a~~l~~~G~----~v~~~-~r~~~~~~~~~~~l-------~~~~~~~~~~~~~~Dl~ 70 (257)
T PRK09242 3 HRWRLDGQTALITGASKGIGLAIAREFLGLGA----DVLIV-ARDADALAQARDEL-------AEEFPEREVHGLAADVS 70 (257)
T ss_pred cccccCCCEEEEeCCCchHHHHHHHHHHHcCC----EEEEE-eCCHHHHHHHHHHH-------HhhCCCCeEEEEECCCC
Confidence 455556678888875 8999999999999999 99999 99987766554310 00011234444433
Q ss_pred CcccHHHHHHHhccccCCCCEEEEecC
Q 024016 80 KPQVVKDVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 80 ~~~~~~~v~~~i~~~l~~~~~vis~~~ 106 (274)
.++.++.++.++...+.+=..+|++.+
T Consensus 71 ~~~~~~~~~~~~~~~~g~id~li~~ag 97 (257)
T PRK09242 71 DDEDRRAILDWVEDHWDGLHILVNNAG 97 (257)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 344566666666544444356776644
No 355
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=96.20 E-value=0.027 Score=51.98 Aligned_cols=67 Identities=24% Similarity=0.386 Sum_probs=49.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH---------------------HHHHHHHcCceeccC---
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK---------------------RRDAFESIGVKVLSD--- 64 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~---------------------~~~~l~~~g~~~~~~--- 64 (274)
..++|.|||.|..|...|..|.+.|+ +|+++ ++.+. ..+.+.+.|+++..+
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~----~V~i~-e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v 214 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGV----QVVVF-DRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEV 214 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC----eEEEE-ecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEe
Confidence 45789999999999999999999999 99999 87641 234455567654321
Q ss_pred -----chhhccCCCEEEEeeC
Q 024016 65 -----NNAVVEYSDVVVFSVK 80 (274)
Q Consensus 65 -----~~~~~~~aDiIil~v~ 80 (274)
..+....+|.||+|+-
T Consensus 215 ~~~~~~~~~~~~~D~vilAtG 235 (467)
T TIGR01318 215 GRDISLDDLLEDYDAVFLGVG 235 (467)
T ss_pred CCccCHHHHHhcCCEEEEEeC
Confidence 1233347899999983
No 356
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=96.19 E-value=0.041 Score=45.80 Aligned_cols=35 Identities=20% Similarity=0.358 Sum_probs=29.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~ 47 (274)
+..+|.|+|+|.+|+.++.+|...|. .+++++ |.+
T Consensus 10 ~~~~VlVvG~GGvGs~va~~Lar~GV---g~i~Lv-D~D 44 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALARSGV---GKLTLI-DFD 44 (231)
T ss_pred hCCCEEEECCCHHHHHHHHHHHHcCC---CEEEEE-CCC
Confidence 35689999999999999999999997 367777 544
No 357
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=96.19 E-value=0.016 Score=48.75 Aligned_cols=67 Identities=12% Similarity=0.255 Sum_probs=46.6
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH--cCceec----cC-c---hhhc-cCCCEEE
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES--IGVKVL----SD-N---NAVV-EYSDVVV 76 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~--~g~~~~----~~-~---~~~~-~~aDiIi 76 (274)
++++|.|+|+ |.+|+.+++.|++.|+ +|++. .|++++...+.. .++.+. .+ . .+.+ .++|+||
T Consensus 16 ~~~~ilItGasG~iG~~l~~~L~~~g~----~V~~~-~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~~d~vi 90 (251)
T PLN00141 16 KTKTVFVAGATGRTGKRIVEQLLAKGF----AVKAG-VRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVEAIGDDSDAVI 90 (251)
T ss_pred cCCeEEEECCCcHHHHHHHHHHHhCCC----EEEEE-ecCHHHHHHhcccCCceEEEEeeCCCCHHHHHHHhhcCCCEEE
Confidence 3579999995 9999999999999999 99998 898877654432 123221 11 1 1223 4678888
Q ss_pred EeeC
Q 024016 77 FSVK 80 (274)
Q Consensus 77 l~v~ 80 (274)
.+.+
T Consensus 91 ~~~g 94 (251)
T PLN00141 91 CATG 94 (251)
T ss_pred ECCC
Confidence 7754
No 358
>PRK06392 homoserine dehydrogenase; Provisional
Probab=96.19 E-value=0.0072 Score=52.93 Aligned_cols=94 Identities=11% Similarity=0.065 Sum_probs=52.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhC------CCCCCCcE-EEEeCCCHHH-------HHHHH---HcC-cee--cc--Cchhh
Q 024016 11 FILGFIGAGKMAESIAKGVAKS------GVLPPDRI-CTAVHSNLKR-------RDAFE---SIG-VKV--LS--DNNAV 68 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~------g~~~~~~v-~v~~~r~~~~-------~~~l~---~~g-~~~--~~--~~~~~ 68 (274)
|||++||+|++|+.+++.|.+. |. ..+| .++ +++... .+++. +.| +.. .. +..++
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~--~l~VVaVs-ds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~l 77 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNN--GISVVSVS-DSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEI 77 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCC--CeEEEEEE-ECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHH
Confidence 4899999999999999998773 22 1133 344 655321 11221 112 110 11 23333
Q ss_pred c-cCCCEEEEeeCc-ccHHHHHHHhccccCCCCEEEEecCC
Q 024016 69 V-EYSDVVVFSVKP-QVVKDVAMQIRPLLSRKKLLVSVAAG 107 (274)
Q Consensus 69 ~-~~aDiIil~v~~-~~~~~v~~~i~~~l~~~~~vis~~~g 107 (274)
. .++|+++-|++. +.-.....-+.+.+..|+-||+...+
T Consensus 78 l~~~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVTaNKg 118 (326)
T PRK06392 78 FEIKPDVIVDVTPASKDGIREKNLYINAFEHGIDVVTANKS 118 (326)
T ss_pred hcCCCCEEEECCCCCCcCchHHHHHHHHHHCCCEEEcCCHH
Confidence 2 368999999973 22122333344556677778866543
No 359
>PRK07411 hypothetical protein; Validated
Probab=96.18 E-value=0.024 Score=50.98 Aligned_cols=79 Identities=15% Similarity=0.139 Sum_probs=52.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-------------------HHH----HHHHH--cCcee--c
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-------------------KRR----DAFES--IGVKV--L 62 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~-------------------~~~----~~l~~--~g~~~--~ 62 (274)
..||.|||+|.+|+.++.+|...|. .+++++ |.+. .|+ +.+.+ ..+++ .
T Consensus 38 ~~~VlivG~GGlG~~va~~La~~Gv---g~l~lv-D~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~ 113 (390)
T PRK07411 38 AASVLCIGTGGLGSPLLLYLAAAGI---GRIGIV-DFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLY 113 (390)
T ss_pred cCcEEEECCCHHHHHHHHHHHHcCC---CEEEEE-CCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEE
Confidence 4689999999999999999999997 256666 4421 111 22222 22221 1
Q ss_pred ------cCchhhccCCCEEEEeeCcccHHHHHHHhc
Q 024016 63 ------SDNNAVVEYSDVVVFSVKPQVVKDVAMQIR 92 (274)
Q Consensus 63 ------~~~~~~~~~aDiIil~v~~~~~~~v~~~i~ 92 (274)
.+..+.+.++|+||.|+.....+.++.++.
T Consensus 114 ~~~~~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~ 149 (390)
T PRK07411 114 ETRLSSENALDILAPYDVVVDGTDNFPTRYLVNDAC 149 (390)
T ss_pred ecccCHHhHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 122356788999999997766666666544
No 360
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=96.17 E-value=0.023 Score=48.75 Aligned_cols=92 Identities=14% Similarity=0.183 Sum_probs=65.7
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHH-HHHHHHcCceeccCchhhccC--CCEEEEeeCcccHH
Q 024016 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKR-RDAFESIGVKVLSDNNAVVEY--SDVVVFSVKPQVVK 85 (274)
Q Consensus 10 ~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~-~~~l~~~g~~~~~~~~~~~~~--aDiIil~v~~~~~~ 85 (274)
..||.|.|. |.+|+.+-.+|...|+ + .+| .-+|.+ .+.. .|+..+.+..++-+. .|+.++++|++.+.
T Consensus 6 ~~~~~~~g~~~~~~~~~~~~~~~~g~----~-~v~-~V~p~~~~~~v--~G~~~y~sv~dlp~~~~~Dlavi~vpa~~v~ 77 (286)
T TIGR01019 6 DTKVIVQGITGSQGSFHTEQMLAYGT----N-IVG-GVTPGKGGTTV--LGLPVFDSVKEAVEETGANASVIFVPAPFAA 77 (286)
T ss_pred CCcEEEecCCcHHHHHHHHHHHhCCC----C-EEE-EECCCCCccee--cCeeccCCHHHHhhccCCCEEEEecCHHHHH
Confidence 468999996 9999999999999998 5 344 334431 1111 588888888887765 79999999999999
Q ss_pred HHHHHhccccCCCCEEEEecCCCCHH
Q 024016 86 DVAMQIRPLLSRKKLLVSVAAGVKLK 111 (274)
Q Consensus 86 ~v~~~i~~~l~~~~~vis~~~g~~~~ 111 (274)
+++++....- - +.+|-.++|....
T Consensus 78 ~~l~e~~~~G-v-k~avIis~Gf~e~ 101 (286)
T TIGR01019 78 DAIFEAIDAG-I-ELIVCITEGIPVH 101 (286)
T ss_pred HHHHHHHHCC-C-CEEEEECCCCCHH
Confidence 9998866431 2 2333356777643
No 361
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=96.14 E-value=0.082 Score=44.44 Aligned_cols=100 Identities=18% Similarity=0.226 Sum_probs=65.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHH-HHH--cC--------ceeccCchhhccCCCEEEEe
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA-FES--IG--------VKVLSDNNAVVEYSDVVVFS 78 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~-l~~--~g--------~~~~~~~~~~~~~aDiIil~ 78 (274)
.-||.|+|.|.+|.+.+..++..|... ++.+. |-++++++- ... +| +....| ..+..+++++|+.
T Consensus 20 ~~KItVVG~G~VGmAca~siL~k~Lad--el~lv-Dv~~dklkGE~MDLqH~s~f~~~~~V~~~~D-y~~sa~S~lvIiT 95 (332)
T KOG1495|consen 20 HNKITVVGVGQVGMACAISILLKGLAD--ELVLV-DVNEDKLKGEMMDLQHGSAFLSTPNVVASKD-YSVSANSKLVIIT 95 (332)
T ss_pred CceEEEEccchHHHHHHHHHHHhhhhh--ceEEE-ecCcchhhhhhhhhccccccccCCceEecCc-ccccCCCcEEEEe
Confidence 469999999999999999999988733 78888 888876531 111 22 222223 3456789999998
Q ss_pred eC--cc--c-H-------HHHHHHhcc---ccCCCCEEEEecCCCCHHHH
Q 024016 79 VK--PQ--V-V-------KDVAMQIRP---LLSRKKLLVSVAAGVKLKDL 113 (274)
Q Consensus 79 v~--~~--~-~-------~~v~~~i~~---~l~~~~~vis~~~g~~~~~l 113 (274)
.- ++ . - -++++.+.| ...|+++++-.++++.+-+.
T Consensus 96 AGarq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNPVDilTY 145 (332)
T KOG1495|consen 96 AGARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNPVDILTY 145 (332)
T ss_pred cCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCchHHHHH
Confidence 72 11 1 1 123333333 24788888888888775443
No 362
>PRK08374 homoserine dehydrogenase; Provisional
Probab=96.10 E-value=0.011 Score=52.13 Aligned_cols=93 Identities=15% Similarity=0.175 Sum_probs=53.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHh--------CCCCCCCcEEEEeCCCHHH-------HHHHH---H-cCc-e-ec------
Q 024016 10 SFILGFIGAGKMAESIAKGVAK--------SGVLPPDRICTAVHSNLKR-------RDAFE---S-IGV-K-VL------ 62 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~--------~g~~~~~~v~v~~~r~~~~-------~~~l~---~-~g~-~-~~------ 62 (274)
.++|+++|+|++|+.+++.|.+ .|. .-+|....+++... .+++. + .+. . ..
T Consensus 2 ~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~--~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~ 79 (336)
T PRK08374 2 EVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGV--ELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVY 79 (336)
T ss_pred eeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCC--CEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhcccccccc
Confidence 3699999999999999998876 343 01333222543211 12221 1 110 0 10
Q ss_pred -cCchhhc--cCCCEEEEeeCcccHHHHHHHhccccCCCCEEEEecCC
Q 024016 63 -SDNNAVV--EYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAG 107 (274)
Q Consensus 63 -~~~~~~~--~~aDiIil~v~~~~~~~v~~~i~~~l~~~~~vis~~~g 107 (274)
.+..+.+ .++|+||-++.++...++.... +..|.-||+...+
T Consensus 80 ~~~~~ell~~~~~DVvVd~t~~~~a~~~~~~a---l~~G~~VVtanK~ 124 (336)
T PRK08374 80 NFSPEEIVEEIDADIVVDVTNDKNAHEWHLEA---LKEGKSVVTSNKP 124 (336)
T ss_pred CCCHHHHHhcCCCCEEEECCCcHHHHHHHHHH---HhhCCcEEECCHH
Confidence 1444555 4789999999877666666554 3456667765444
No 363
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=96.08 E-value=0.062 Score=45.68 Aligned_cols=35 Identities=17% Similarity=0.323 Sum_probs=28.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~ 47 (274)
+..+|.|+|+|.+|+..+.+|...|. .+++++ |.+
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GV---g~itLi-D~D 63 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGI---GAITLI-DMD 63 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCC---CEEEEE-eCC
Confidence 34689999999999999999999995 267766 543
No 364
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=96.04 E-value=0.02 Score=50.66 Aligned_cols=92 Identities=9% Similarity=0.119 Sum_probs=56.9
Q ss_pred CeEEEEcc-cHHHHHHHHHHH-hCCCCCCCcEEEEeCCCHH--HHHHHHHcCceecc-CchhhccCCCEEEEeeCcccHH
Q 024016 11 FILGFIGA-GKMAESIAKGVA-KSGVLPPDRICTAVHSNLK--RRDAFESIGVKVLS-DNNAVVEYSDVVVFSVKPQVVK 85 (274)
Q Consensus 11 ~~IgiIG~-G~mG~~~a~~L~-~~g~~~~~~v~v~~~r~~~--~~~~l~~~g~~~~~-~~~~~~~~aDiIil~v~~~~~~ 85 (274)
++|||+|+ |.+|+.|.+.|. +..+ +..++.++ ..+.. +.-.+......+.. ++.+...+.|++|.|.+.+..+
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~f-p~~~~~~~-ss~~s~g~~~~f~~~~~~v~~~~~~~~~~~vDivffa~g~~~s~ 78 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDF-DAIRPVFF-STSQLGQAAPSFGGTTGTLQDAFDIDALKALDIIITCQGGDYTN 78 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCC-ccccEEEE-EchhhCCCcCCCCCCcceEEcCcccccccCCCEEEEcCCHHHHH
Confidence 48999998 999999999998 4444 43455555 32211 11111111122221 1223567899999999888777
Q ss_pred HHHHHhccccCCC--CEEEEecCC
Q 024016 86 DVAMQIRPLLSRK--KLLVSVAAG 107 (274)
Q Consensus 86 ~v~~~i~~~l~~~--~~vis~~~g 107 (274)
++..... ..| .+||+.++.
T Consensus 79 ~~~p~~~---~aG~~~~VIDnSSa 99 (366)
T TIGR01745 79 EIYPKLR---ESGWQGYWIDAASS 99 (366)
T ss_pred HHHHHHH---hCCCCeEEEECChh
Confidence 7766554 356 678887554
No 365
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=95.98 E-value=0.062 Score=45.04 Aligned_cols=84 Identities=12% Similarity=0.136 Sum_probs=53.4
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---CcccH
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVV 84 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~~~ 84 (274)
+.++|.|.|. |.+|..+++.|++.|+ +|.+. +|++++.+.+.+. + .+ .+.++.++.. .++.+
T Consensus 9 ~~k~vlItGa~g~iG~~ia~~l~~~G~----~V~~~-~r~~~~~~~~~~~-i------~~--~~~~~~~~~~D~~~~~~~ 74 (255)
T PRK07523 9 TGRRALVTGSSQGIGYALAEGLAQAGA----EVILN-GRDPAKLAAAAES-L------KG--QGLSAHALAFDVTDHDAV 74 (255)
T ss_pred CCCEEEEECCcchHHHHHHHHHHHcCC----EEEEE-eCCHHHHHHHHHH-H------Hh--cCceEEEEEccCCCHHHH
Confidence 4568988875 9999999999999999 99999 9998766554321 0 00 0122333322 34456
Q ss_pred HHHHHHhccccCCCCEEEEecC
Q 024016 85 KDVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~~~ 106 (274)
..++.++...+.+=..+|+..+
T Consensus 75 ~~~~~~~~~~~~~~d~li~~ag 96 (255)
T PRK07523 75 RAAIDAFEAEIGPIDILVNNAG 96 (255)
T ss_pred HHHHHHHHHhcCCCCEEEECCC
Confidence 6666665544434346676543
No 366
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=95.97 E-value=0.026 Score=54.38 Aligned_cols=68 Identities=16% Similarity=0.198 Sum_probs=48.8
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHH---------------------HHHHHHcCceeccC--
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKR---------------------RDAFESIGVKVLSD-- 64 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~---------------------~~~l~~~g~~~~~~-- 64 (274)
...++|.|||.|..|...|..|.+.|+ +|+++ ++++.. .+.+.+.|+++..+
T Consensus 191 ~~~k~VaIIGaGpAGl~aA~~La~~G~----~Vtv~-e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~ 265 (652)
T PRK12814 191 KSGKKVAIIGAGPAGLTAAYYLLRKGH----DVTIF-DANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTV 265 (652)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC----cEEEE-ecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCc
Confidence 345799999999999999999999999 99999 775421 23444467654211
Q ss_pred ------chhhccCCCEEEEeeC
Q 024016 65 ------NNAVVEYSDVVVFSVK 80 (274)
Q Consensus 65 ------~~~~~~~aDiIil~v~ 80 (274)
..+....+|.||+++-
T Consensus 266 v~~dv~~~~~~~~~DaVilAtG 287 (652)
T PRK12814 266 FGRDITLEELQKEFDAVLLAVG 287 (652)
T ss_pred ccCccCHHHHHhhcCEEEEEcC
Confidence 2233345899999983
No 367
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=95.97 E-value=0.025 Score=51.92 Aligned_cols=63 Identities=22% Similarity=0.387 Sum_probs=47.8
Q ss_pred eEEEEcccHHHHH-HHHHHHhCCCCCCCcEEEEeCCCHH-HHHHHHHcCceecc-CchhhccCCCEEEEee
Q 024016 12 ILGFIGAGKMAES-IAKGVAKSGVLPPDRICTAVHSNLK-RRDAFESIGVKVLS-DNNAVVEYSDVVVFSV 79 (274)
Q Consensus 12 ~IgiIG~G~mG~~-~a~~L~~~g~~~~~~v~v~~~r~~~-~~~~l~~~g~~~~~-~~~~~~~~aDiIil~v 79 (274)
+|-|||.|..|.+ +|+.|.+.|+ +|+++ |++.. ..+.|.+.|+.+.. ...+.++++|+||.+-
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~G~----~v~~~-D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~sp 66 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNRGY----QVSGS-DIAENATTKRLEALGIPIYIGHSAENLDDADVVVVSA 66 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHCCC----eEEEE-CCCcchHHHHHHHCcCEEeCCCCHHHCCCCCEEEECC
Confidence 4789999999998 9999999999 99999 86543 34456667876642 2234466799998863
No 368
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=95.97 E-value=0.022 Score=53.39 Aligned_cols=42 Identities=19% Similarity=0.307 Sum_probs=35.1
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE 55 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~ 55 (274)
+.++|.|.|+ |.+|..+++.|++.|+ +|+++ .|+.++.+.+.
T Consensus 79 ~gKvVLVTGATGgIG~aLAr~LLk~G~----~Vval-~Rn~ekl~~l~ 121 (576)
T PLN03209 79 DEDLAFVAGATGKVGSRTVRELLKLGF----RVRAG-VRSAQRAESLV 121 (576)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC----eEEEE-eCCHHHHHHHH
Confidence 3456778875 9999999999999999 99999 99988876553
No 369
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=95.93 E-value=0.055 Score=47.36 Aligned_cols=93 Identities=11% Similarity=0.043 Sum_probs=54.4
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-HHHHHHHHcC-----------------------ceec--cCc
Q 024016 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-KRRDAFESIG-----------------------VKVL--SDN 65 (274)
Q Consensus 12 ~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~-~~~~~l~~~g-----------------------~~~~--~~~ 65 (274)
||||+|.|++|..+.+.|.+.+.-+..+|...++... +....+.+++ +.+. .++
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~~p 80 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNELADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGDCIRVLHSPTP 80 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCeEEEEEEcCCh
Confidence 6999999999999999988754000116666634332 3333443311 1111 123
Q ss_pred hhh-c--cCCCEEEEeeCcccHHHHHHHhccccCCCCEEEEecCC
Q 024016 66 NAV-V--EYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAG 107 (274)
Q Consensus 66 ~~~-~--~~aDiIil~v~~~~~~~v~~~i~~~l~~~~~vis~~~g 107 (274)
.+. . .++|+||.|++.....+..... +..|..+|.++++
T Consensus 81 ~~~~w~~~gvDiVie~tG~~~s~e~a~~~---l~aGa~~V~~SaP 122 (325)
T TIGR01532 81 EALPWRALGVDLVLDCTGVYGNREQGERH---IRAGAKRVLFSHP 122 (325)
T ss_pred hhccccccCCCEEEEccchhccHHHHHHH---HHcCCeEEEecCC
Confidence 222 1 4789999999877666555433 3456666666554
No 370
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=95.93 E-value=0.035 Score=50.01 Aligned_cols=79 Identities=14% Similarity=0.133 Sum_probs=51.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-------------------HHHHH----HHH--cCcee--c
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-------------------KRRDA----FES--IGVKV--L 62 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~-------------------~~~~~----l~~--~g~~~--~ 62 (274)
..||.|||+|.+|+.++.+|...|. .+++++ |.+. .|++. +.+ ..+++ .
T Consensus 42 ~~~VlviG~GGlGs~va~~La~~Gv---g~i~lv-D~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~ 117 (392)
T PRK07878 42 NARVLVIGAGGLGSPTLLYLAAAGV---GTLGIV-EFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLH 117 (392)
T ss_pred cCCEEEECCCHHHHHHHHHHHHcCC---CeEEEE-CCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEE
Confidence 4689999999999999999999997 256666 4322 12222 222 22322 1
Q ss_pred ------cCchhhccCCCEEEEeeCcccHHHHHHHhc
Q 024016 63 ------SDNNAVVEYSDVVVFSVKPQVVKDVAMQIR 92 (274)
Q Consensus 63 ------~~~~~~~~~aDiIil~v~~~~~~~v~~~i~ 92 (274)
.+..+.++++|+||.|+.....+..+.++.
T Consensus 118 ~~~i~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~ 153 (392)
T PRK07878 118 EFRLDPSNAVELFSQYDLILDGTDNFATRYLVNDAA 153 (392)
T ss_pred eccCChhHHHHHHhcCCEEEECCCCHHHHHHHHHHH
Confidence 112356788999999987666666665544
No 371
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=95.92 E-value=0.032 Score=52.73 Aligned_cols=31 Identities=23% Similarity=0.364 Sum_probs=26.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEE
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTA 43 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~ 43 (274)
..||.|||+|.+|+..++.|...|. .+++++
T Consensus 338 ~~kVLIvGaGGLGs~VA~~La~~GV---g~ItlV 368 (664)
T TIGR01381 338 QLKVLLLGAGTLGCNVARCLIGWGV---RHITFV 368 (664)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCC---CeEEEE
Confidence 4699999999999999999999997 245554
No 372
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=95.92 E-value=0.012 Score=51.50 Aligned_cols=62 Identities=15% Similarity=0.274 Sum_probs=42.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHH-HHHcCceec-c---CchhhccCCCEEE
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA-FESIGVKVL-S---DNNAVVEYSDVVV 76 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~-l~~~g~~~~-~---~~~~~~~~aDiIi 76 (274)
+++|||||.|-.|..|+..-.+-|+ ++++. +.+++.... ....-+... + ...++++.||+|=
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~lG~----~v~vL-dp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT 67 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARLGI----KVIVL-DPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVIT 67 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCC----EEEEe-cCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEE
Confidence 3689999999999999999999999 99999 877654322 222112111 2 2345677788774
No 373
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.91 E-value=0.038 Score=47.04 Aligned_cols=73 Identities=15% Similarity=0.317 Sum_probs=55.0
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccH
Q 024016 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVV 84 (274)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~ 84 (274)
+...+++.|||- ..+|.+++.-|.+.|. .|+++ ++.. .+..+.+++||+||.++. |..+
T Consensus 155 ~l~Gk~vvViGrS~~VGkPla~lL~~~~A----tVt~c-hs~T--------------~~l~~~~~~ADIvIsAvGkp~~i 215 (278)
T PRK14172 155 DIEGKEVVVIGRSNIVGKPVAQLLLNENA----TVTIC-HSKT--------------KNLKEVCKKADILVVAIGRPKFI 215 (278)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCC----EEEEe-CCCC--------------CCHHHHHhhCCEEEEcCCCcCcc
Confidence 345679999987 5689999999998887 89998 6421 245677889999999995 5543
Q ss_pred HHHHHHhccccCCCCEEEEe
Q 024016 85 KDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~ 104 (274)
.. ..+++|.+||++
T Consensus 216 ~~------~~ik~gavVIDv 229 (278)
T PRK14172 216 DE------EYVKEGAIVIDV 229 (278)
T ss_pred CH------HHcCCCcEEEEe
Confidence 21 236799999986
No 374
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=95.91 E-value=0.042 Score=49.93 Aligned_cols=69 Identities=19% Similarity=0.358 Sum_probs=48.4
Q ss_pred CeEEEEcccHHHH-HHHHHHHhC-CCCCCCcEEEEeCCC-HHHHHHHHH--------cC----ceeccCchhhccCCCEE
Q 024016 11 FILGFIGAGKMAE-SIAKGVAKS-GVLPPDRICTAVHSN-LKRRDAFES--------IG----VKVLSDNNAVVEYSDVV 75 (274)
Q Consensus 11 ~~IgiIG~G~mG~-~~a~~L~~~-g~~~~~~v~v~~~r~-~~~~~~l~~--------~g----~~~~~~~~~~~~~aDiI 75 (274)
|||.|||.|..-+ .+...|.+. --++..+|.++ |.+ +++.+...+ .| +..+++..+++++||+|
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~-Did~~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~~al~gadfV 79 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLV-DIDEEEKLEIVGALAKRMVKKAGLPIKVHLTTDRREALEGADFV 79 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEe-cCChHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCEE
Confidence 6999999998643 355566553 21344689999 999 787643221 23 34567889999999999
Q ss_pred EEeeC
Q 024016 76 VFSVK 80 (274)
Q Consensus 76 il~v~ 80 (274)
|.+..
T Consensus 80 i~~~~ 84 (419)
T cd05296 80 FTQIR 84 (419)
T ss_pred EEEEe
Confidence 99973
No 375
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=95.90 E-value=0.068 Score=49.32 Aligned_cols=102 Identities=10% Similarity=0.116 Sum_probs=69.1
Q ss_pred CCCCeEEEEcc----------cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc--------------------
Q 024016 8 AESFILGFIGA----------GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI-------------------- 57 (274)
Q Consensus 8 ~~~~~IgiIG~----------G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~-------------------- 57 (274)
.+.+||+|+|+ ..-...++..|.+.|. +|.+| |.--...+.-...
T Consensus 322 ~~~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~----~V~~~-DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (473)
T PLN02353 322 VSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKA----KLSIY-DPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTA 396 (473)
T ss_pred cCCCEEEEEeeeecCCCCccccChHHHHHHHHHhCCC----EEEEE-CCCCChHHHHHHhhccccccccccccccccccc
Confidence 35679999998 5578889999999998 99999 8753221110001
Q ss_pred --CceeccCchhhccCCCEEEEeeCcccHHHH-HHHhccccCCCCEEEEecCCCCHHHHH
Q 024016 58 --GVKVLSDNNAVVEYSDVVVFSVKPQVVKDV-AMQIRPLLSRKKLLVSVAAGVKLKDLQ 114 (274)
Q Consensus 58 --g~~~~~~~~~~~~~aDiIil~v~~~~~~~v-~~~i~~~l~~~~~vis~~~g~~~~~l~ 114 (274)
+++...+..++++++|+|+++++-+.++.+ ++.+.+.+.+.++|++.-+-+..+.+.
T Consensus 397 ~~~~~~~~~~~~a~~~aD~vvi~t~~~ef~~l~~~~~~~~m~~~~~viD~rn~l~~~~~~ 456 (473)
T PLN02353 397 VKQVSVVWDAYEATKGAHGICILTEWDEFKTLDYQKIYDNMQKPAFVFDGRNVLDHEKLR 456 (473)
T ss_pred ccceeeeCCHHHHhcCCCEEEECCCChHhcccCHHHHHHhccCCCEEEECCCCCCHHHHH
Confidence 234555667889999999999987766543 334444444445788876666655554
No 376
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=95.88 E-value=0.029 Score=45.07 Aligned_cols=86 Identities=21% Similarity=0.230 Sum_probs=57.4
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc-C--ceec--cC----chhhccCCCEEE
Q 024016 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI-G--VKVL--SD----NNAVVEYSDVVV 76 (274)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~-g--~~~~--~~----~~~~~~~aDiIi 76 (274)
..+.++|.|||- ..+|.+++.-|.+.|. .|+++ +.+.-.. +... . -.-. .+ ..+.+++|||||
T Consensus 59 ~l~GK~vvVIGrS~iVGkPla~lL~~~~A----tVti~-~~~~~~~--~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVI 131 (197)
T cd01079 59 RLYGKTITIINRSEVVGRPLAALLANDGA----RVYSV-DINGIQV--FTRGESIRHEKHHVTDEEAMTLDCLSQSDVVI 131 (197)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCC----EEEEE-ecCcccc--cccccccccccccccchhhHHHHHhhhCCEEE
Confidence 566789999987 4679999999999887 89988 7543211 1110 0 0000 12 457789999999
Q ss_pred EeeC-ccc-HHHHHHHhccccCCCCEEEEec
Q 024016 77 FSVK-PQV-VKDVAMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 77 l~v~-~~~-~~~v~~~i~~~l~~~~~vis~~ 105 (274)
.+++ +.. +.. ..+++|.+||++.
T Consensus 132 sAvG~~~~~i~~------d~ik~GavVIDVG 156 (197)
T cd01079 132 TGVPSPNYKVPT------ELLKDGAICINFA 156 (197)
T ss_pred EccCCCCCccCH------HHcCCCcEEEEcC
Confidence 9996 443 221 2357999999863
No 377
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=95.88 E-value=0.042 Score=47.29 Aligned_cols=73 Identities=15% Similarity=0.251 Sum_probs=54.7
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccH
Q 024016 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVV 84 (274)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~ 84 (274)
+...++|.|||- ..+|.+++.-|.+.|. .|+++ +... .+..+.+++||+||.++. +..+
T Consensus 164 ~l~Gk~vvVIGRS~iVGkPla~lL~~~~A----TVtvc-hs~T--------------~nl~~~~~~ADIvv~AvGk~~~i 224 (299)
T PLN02516 164 PIKGKKAVVVGRSNIVGLPVSLLLLKADA----TVTVV-HSRT--------------PDPESIVREADIVIAAAGQAMMI 224 (299)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCC----EEEEe-CCCC--------------CCHHHHHhhCCEEEEcCCCcCcc
Confidence 445689999987 4679999999998887 89998 5431 245677899999999994 4322
Q ss_pred HHHHHHhccccCCCCEEEEe
Q 024016 85 KDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~ 104 (274)
. ..++++|.+||++
T Consensus 225 ~------~~~vk~gavVIDv 238 (299)
T PLN02516 225 K------GDWIKPGAAVIDV 238 (299)
T ss_pred C------HHHcCCCCEEEEe
Confidence 2 1246899999986
No 378
>PRK06182 short chain dehydrogenase; Validated
Probab=95.88 E-value=0.076 Score=45.04 Aligned_cols=43 Identities=16% Similarity=0.273 Sum_probs=36.3
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES 56 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~ 56 (274)
+.++|.|.|+ |.+|.++++.|.+.|+ +|++. +|++++.+.+..
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~----~V~~~-~r~~~~l~~~~~ 45 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGY----TVYGA-ARRVDKMEDLAS 45 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHh
Confidence 4568888885 9999999999999999 99999 999887765543
No 379
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=95.85 E-value=0.035 Score=54.83 Aligned_cols=65 Identities=23% Similarity=0.344 Sum_probs=49.8
Q ss_pred CCCeEEEEcccHHHHHH-HHHHHhCCCCCCCcEEEEeCCCH-HHHHHHHHcCceecc-CchhhccCCCEEEEe
Q 024016 9 ESFILGFIGAGKMAESI-AKGVAKSGVLPPDRICTAVHSNL-KRRDAFESIGVKVLS-DNNAVVEYSDVVVFS 78 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~-a~~L~~~g~~~~~~v~v~~~r~~-~~~~~l~~~g~~~~~-~~~~~~~~aDiIil~ 78 (274)
.+++|.|||+|..|.+. |+.|.+.|+ +|+++ |.++ ...+.|.+.|+.+.. ...+.+.++|+|+..
T Consensus 3 ~~~~i~viG~G~sG~salA~~L~~~G~----~V~~s-D~~~~~~~~~L~~~gi~~~~g~~~~~~~~~d~vV~S 70 (809)
T PRK14573 3 KSLFYHFIGIGGIGMSALAHILLDRGY----SVSGS-DLSEGKTVEKLKAKGARFFLGHQEEHVPEDAVVVYS 70 (809)
T ss_pred CcceEEEEEecHHhHHHHHHHHHHCCC----eEEEE-CCCCChHHHHHHHCCCEEeCCCCHHHcCCCCEEEEC
Confidence 45679999999999997 999999999 99999 8654 344567667876532 233556789999876
No 380
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=95.82 E-value=0.058 Score=44.60 Aligned_cols=84 Identities=18% Similarity=0.202 Sum_probs=53.1
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---CcccH
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVV 84 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~~~ 84 (274)
+.++|.|.|. |.+|..+++.|.+.|+ +|++. +|++++.+.+... +. + ..+++.++.. .++.+
T Consensus 4 ~~~~ilItGasg~iG~~l~~~l~~~g~----~v~~~-~r~~~~~~~~~~~-~~------~--~~~~~~~~~~D~~~~~~~ 69 (246)
T PRK05653 4 QGKTALVTGASRGIGRAIALRLAADGA----KVVIY-DSNEEAAEALAAE-LR------A--AGGEARVLVFDVSDEAAV 69 (246)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC----EEEEE-eCChhHHHHHHHH-HH------h--cCCceEEEEccCCCHHHH
Confidence 4468999975 9999999999999999 89999 9998766543321 00 0 1223333333 34456
Q ss_pred HHHHHHhccccCCCCEEEEecC
Q 024016 85 KDVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~~~ 106 (274)
.+++.++...+.+=..+|+..+
T Consensus 70 ~~~~~~~~~~~~~id~vi~~ag 91 (246)
T PRK05653 70 RALIEAAVEAFGALDILVNNAG 91 (246)
T ss_pred HHHHHHHHHHhCCCCEEEECCC
Confidence 6666665543333346776653
No 381
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=95.82 E-value=0.034 Score=52.66 Aligned_cols=68 Identities=16% Similarity=0.147 Sum_probs=48.7
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH---------------------HHHHHHHHcCceeccC--
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL---------------------KRRDAFESIGVKVLSD-- 64 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~---------------------~~~~~l~~~g~~~~~~-- 64 (274)
...++|.|||+|..|...+..|.+.|+ +|+++ ++.+ .+.+.+.+.|+.+..+
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~----~V~v~-e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~ 209 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGH----AVTIF-EAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVR 209 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC----eEEEE-ecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCE
Confidence 345799999999999999999999999 89999 8532 2344555677653221
Q ss_pred ------chhhccCCCEEEEeeC
Q 024016 65 ------NNAVVEYSDVVVFSVK 80 (274)
Q Consensus 65 ------~~~~~~~aDiIil~v~ 80 (274)
..+.-...|.||+++-
T Consensus 210 ~~~~~~~~~~~~~~D~Vi~AtG 231 (564)
T PRK12771 210 VGEDITLEQLEGEFDAVFVAIG 231 (564)
T ss_pred ECCcCCHHHHHhhCCEEEEeeC
Confidence 1122335899999994
No 382
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.81 E-value=0.04 Score=47.17 Aligned_cols=73 Identities=22% Similarity=0.341 Sum_probs=54.7
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccH
Q 024016 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVV 84 (274)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~ 84 (274)
+...+++.|||- ..+|.+++.-|.+.+. .|+++ .+.. .+..+.+++||+||.++. |..+
T Consensus 152 ~l~Gk~vvViGrS~iVGkPla~lL~~~~a----TVtic-hs~T--------------~~l~~~~~~ADIvIsAvGkp~~i 212 (287)
T PRK14173 152 PLAGKEVVVVGRSNIVGKPLAALLLREDA----TVTLA-HSKT--------------QDLPAVTRRADVLVVAVGRPHLI 212 (287)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCC----EEEEe-CCCC--------------CCHHHHHhhCCEEEEecCCcCcc
Confidence 345689999987 6789999999998887 89988 5331 245667889999999994 5533
Q ss_pred HHHHHHhccccCCCCEEEEe
Q 024016 85 KDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~ 104 (274)
. ..++++|.+||++
T Consensus 213 ~------~~~vk~GavVIDV 226 (287)
T PRK14173 213 T------PEMVRPGAVVVDV 226 (287)
T ss_pred C------HHHcCCCCEEEEc
Confidence 2 1236799999986
No 383
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.79 E-value=0.048 Score=46.56 Aligned_cols=73 Identities=16% Similarity=0.252 Sum_probs=54.8
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccH
Q 024016 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVV 84 (274)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~ 84 (274)
+...+++.|||- ..+|.+++.-|.+.|. .|+++ +... .+..+.+++||+||.++. +..+
T Consensus 156 ~l~Gk~vvViGrS~iVGkPla~lL~~~~a----tVt~c-hs~T--------------~~l~~~~~~ADIvIsAvGk~~~i 216 (284)
T PRK14177 156 DVTGKNAVVVGRSPILGKPMAMLLTEMNA----TVTLC-HSKT--------------QNLPSIVRQADIIVGAVGKPEFI 216 (284)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCC----EEEEe-CCCC--------------CCHHHHHhhCCEEEEeCCCcCcc
Confidence 345679999987 6789999999998887 89988 5331 245567889999999994 5543
Q ss_pred HHHHHHhccccCCCCEEEEe
Q 024016 85 KDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~ 104 (274)
. ...+++|.+||++
T Consensus 217 ~------~~~ik~gavVIDv 230 (284)
T PRK14177 217 K------ADWISEGAVLLDA 230 (284)
T ss_pred C------HHHcCCCCEEEEe
Confidence 2 1236799999986
No 384
>PLN03075 nicotianamine synthase; Provisional
Probab=95.79 E-value=0.071 Score=45.87 Aligned_cols=93 Identities=16% Similarity=0.146 Sum_probs=59.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-----cC----ceec-cCchhh---ccCCCEE
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----IG----VKVL-SDNNAV---VEYSDVV 75 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-----~g----~~~~-~~~~~~---~~~aDiI 75 (274)
...+|.+||+|..|..-.--+ + ++.+...++.+ |++++..+...+ .| ++.. .|..+. ..+.|+|
T Consensus 123 ~p~~VldIGcGpgpltaiila-a-~~~p~~~~~gi-D~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlV 199 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLA-K-HHLPTTSFHNF-DIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVV 199 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHH-H-hcCCCCEEEEE-eCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEE
Confidence 456899999998866333222 1 12233378899 999987654443 22 2221 222222 3579999
Q ss_pred EEee----CcccHHHHHHHhccccCCCCEEEEe
Q 024016 76 VFSV----KPQVVKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 76 il~v----~~~~~~~v~~~i~~~l~~~~~vis~ 104 (274)
|+.+ ....-.++++.+...++||.+++--
T Consensus 200 F~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr 232 (296)
T PLN03075 200 FLAALVGMDKEEKVKVIEHLGKHMAPGALLMLR 232 (296)
T ss_pred EEecccccccccHHHHHHHHHHhcCCCcEEEEe
Confidence 9986 2356678889999999999887743
No 385
>PLN02477 glutamate dehydrogenase
Probab=95.78 E-value=0.053 Score=48.93 Aligned_cols=111 Identities=18% Similarity=0.228 Sum_probs=63.7
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEE-EEeCCC----------HHHHHHHHH-c-------CceeccCchh
Q 024016 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRIC-TAVHSN----------LKRRDAFES-I-------GVKVLSDNNA 67 (274)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~-v~~~r~----------~~~~~~l~~-~-------g~~~~~~~~~ 67 (274)
..+.+||+|.|.|++|+..++.|.+.|. .|+ +. |.+ .+.+.+.++ . +.+.. ++.+
T Consensus 203 ~l~g~~VaIqGfGnVG~~~A~~L~e~Ga----kVVaVs-D~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i-~~~e 276 (410)
T PLN02477 203 SIAGQTFVIQGFGNVGSWAAQLIHEKGG----KIVAVS-DITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPI-DPDD 276 (410)
T ss_pred CccCCEEEEECCCHHHHHHHHHHHHcCC----EEEEEE-CCCCeEECCCCCCHHHHHHHHHhcCchhccccceEe-cCcc
Confidence 3456899999999999999999999998 776 55 765 544433322 1 22222 2233
Q ss_pred h-ccCCCEEEEeeCcccH-HHHHHHhccccCCCCEEEEecCCCCHHHHHHhhCCCceEEEcCCc
Q 024016 68 V-VEYSDVVVFSVKPQVV-KDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHSRFIRVMPNT 129 (274)
Q Consensus 68 ~-~~~aDiIil~v~~~~~-~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~~~~~~~~~p~~ 129 (274)
+ ..+|||++-|--...+ .+....+ .-++|+--.++-....-.+.+.. +-+-+.|..
T Consensus 277 ~l~~~~DvliP~Al~~~I~~~na~~i-----~ak~I~egAN~p~t~ea~~~L~~-rGI~~~PD~ 334 (410)
T PLN02477 277 ILVEPCDVLIPAALGGVINKENAADV-----KAKFIVEAANHPTDPEADEILRK-KGVVVLPDI 334 (410)
T ss_pred ceeccccEEeeccccccCCHhHHHHc-----CCcEEEeCCCCCCCHHHHHHHHH-CCcEEEChH
Confidence 3 3489999988543332 3333333 22566655554333333344432 334455643
No 386
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=95.78 E-value=0.1 Score=44.54 Aligned_cols=86 Identities=20% Similarity=0.186 Sum_probs=56.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCc-EEEEeCCCHHHHHHHHHcCceeccCch---hh----c--cCCCEEEEee
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDR-ICTAVHSNLKRRDAFESIGVKVLSDNN---AV----V--EYSDVVVFSV 79 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~-v~v~~~r~~~~~~~l~~~g~~~~~~~~---~~----~--~~aDiIil~v 79 (274)
..+|.|+|+|.+|...++.+...|. + |++. ++++++.+.+.+.|+...-+.. +. . ...|++|-|+
T Consensus 121 g~~VlV~G~G~vG~~~~~~ak~~G~----~~Vi~~-~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~ 195 (280)
T TIGR03366 121 GRRVLVVGAGMLGLTAAAAAAAAGA----ARVVAA-DPSPDRRELALSFGATALAEPEVLAERQGGLQNGRGVDVALEFS 195 (280)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC----CEEEEE-CCCHHHHHHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEECC
Confidence 4589999999999999888888887 5 8888 9999988877777764321111 11 1 2468888777
Q ss_pred C-cccHHHHHHHhccccCCCCEEEEe
Q 024016 80 K-PQVVKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 80 ~-~~~~~~v~~~i~~~l~~~~~vis~ 104 (274)
. +..+...++- ++++..++..
T Consensus 196 G~~~~~~~~~~~----l~~~G~iv~~ 217 (280)
T TIGR03366 196 GATAAVRACLES----LDVGGTAVLA 217 (280)
T ss_pred CChHHHHHHHHH----hcCCCEEEEe
Confidence 4 3334444433 3344455543
No 387
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=95.77 E-value=0.053 Score=45.34 Aligned_cols=42 Identities=24% Similarity=0.229 Sum_probs=35.8
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH
Q 024016 9 ESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE 55 (274)
Q Consensus 9 ~~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~ 55 (274)
..++|-|.| .|.+|..+++.|++.|+ +|.+. +|++++.+.+.
T Consensus 3 ~~~~vlItG~sg~iG~~la~~l~~~g~----~v~~~-~r~~~~~~~~~ 45 (258)
T PRK12429 3 KGKVALVTGAASGIGLEIALALAKEGA----KVVIA-DLNDEAAAAAA 45 (258)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC----eEEEE-eCCHHHHHHHH
Confidence 456898997 59999999999999999 99999 99988766554
No 388
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=95.77 E-value=0.087 Score=46.45 Aligned_cols=88 Identities=14% Similarity=0.095 Sum_probs=53.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHh-CCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhcc--CCCEEEEeeCcccHHH
Q 024016 10 SFILGFIGAGKMAESIAKGVAK-SGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVE--YSDVVVFSVKPQVVKD 86 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~-~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~aDiIil~v~~~~~~~ 86 (274)
..+|.|+|+|.+|...+..+.+ .|. .+|++. ++++++.+.+.+.+..... .+..+ ..|+||=|+.......
T Consensus 164 g~~VlV~G~G~vGl~~~~~a~~~~g~---~~vi~~-~~~~~k~~~a~~~~~~~~~--~~~~~~~g~d~viD~~G~~~~~~ 237 (341)
T cd08237 164 RNVIGVWGDGNLGYITALLLKQIYPE---SKLVVF-GKHQEKLDLFSFADETYLI--DDIPEDLAVDHAFECVGGRGSQS 237 (341)
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcCC---CcEEEE-eCcHhHHHHHhhcCceeeh--hhhhhccCCcEEEECCCCCccHH
Confidence 4589999999999987776654 332 178889 9999888777654543211 11112 4788888885322222
Q ss_pred HHHHhccccCCCCEEEE
Q 024016 87 VAMQIRPLLSRKKLLVS 103 (274)
Q Consensus 87 v~~~i~~~l~~~~~vis 103 (274)
.+......++++..++.
T Consensus 238 ~~~~~~~~l~~~G~iv~ 254 (341)
T cd08237 238 AINQIIDYIRPQGTIGL 254 (341)
T ss_pred HHHHHHHhCcCCcEEEE
Confidence 33333334455555553
No 389
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.76 E-value=0.048 Score=46.94 Aligned_cols=73 Identities=15% Similarity=0.221 Sum_probs=54.4
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccH
Q 024016 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVV 84 (274)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~ 84 (274)
+...++|.|||- ..+|.+++.-|.+.|. .|+++ .... .+..+.+++||+||.|+. |..+
T Consensus 155 ~l~Gk~vvVIGrS~iVGkPla~lL~~~~a----tVtv~-hs~T--------------~~l~~~~~~ADIvIsAvGkp~~i 215 (297)
T PRK14186 155 DIAGKKAVVVGRSILVGKPLALMLLAANA----TVTIA-HSRT--------------QDLASITREADILVAAAGRPNLI 215 (297)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCC----EEEEe-CCCC--------------CCHHHHHhhCCEEEEccCCcCcc
Confidence 345679999987 5679999999998887 89888 5331 245667889999999995 5533
Q ss_pred HHHHHHhccccCCCCEEEEe
Q 024016 85 KDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~ 104 (274)
.. .++++|.+||++
T Consensus 216 ~~------~~ik~gavVIDv 229 (297)
T PRK14186 216 GA------EMVKPGAVVVDV 229 (297)
T ss_pred CH------HHcCCCCEEEEe
Confidence 21 246799999986
No 390
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.76 E-value=0.045 Score=46.78 Aligned_cols=73 Identities=14% Similarity=0.195 Sum_probs=54.0
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHh--CCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cc
Q 024016 7 PAESFILGFIGA-GKMAESIAKGVAK--SGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQ 82 (274)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~~a~~L~~--~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~ 82 (274)
+...+++.|||- ..+|.+++.-|.+ .+. .|+++ ++. +.+..+.+++||+||.++. |.
T Consensus 155 ~l~Gk~vvViGrS~~VGkPla~lL~~~~~~a----tVtvc-hs~--------------T~~l~~~~k~ADIvV~AvGkp~ 215 (284)
T PRK14193 155 ELAGAHVVVIGRGVTVGRPIGLLLTRRSENA----TVTLC-HTG--------------TRDLAAHTRRADIIVAAAGVAH 215 (284)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHhhccCCC----EEEEe-CCC--------------CCCHHHHHHhCCEEEEecCCcC
Confidence 345679999987 6789999999987 565 88888 543 1356677899999999994 55
Q ss_pred cHHHHHHHhccccCCCCEEEEe
Q 024016 83 VVKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 83 ~~~~v~~~i~~~l~~~~~vis~ 104 (274)
.+.. .++++|.+||++
T Consensus 216 ~i~~------~~ik~GavVIDv 231 (284)
T PRK14193 216 LVTA------DMVKPGAAVLDV 231 (284)
T ss_pred ccCH------HHcCCCCEEEEc
Confidence 3321 246899999986
No 391
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.72 E-value=0.047 Score=46.60 Aligned_cols=73 Identities=15% Similarity=0.257 Sum_probs=54.6
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccH
Q 024016 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVV 84 (274)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~ 84 (274)
+...+++.|||- ..+|.+++.-|.+.+. .|+++ ++.. .+..+.+++||+||.++. |..+
T Consensus 154 ~l~Gk~vvVvGrS~iVGkPla~lL~~~~a----tVt~c-hs~T--------------~nl~~~~~~ADIvIsAvGkp~~i 214 (282)
T PRK14166 154 DLEGKDAVIIGASNIVGRPMATMLLNAGA----TVSVC-HIKT--------------KDLSLYTRQADLIIVAAGCVNLL 214 (282)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCC----EEEEe-CCCC--------------CCHHHHHhhCCEEEEcCCCcCcc
Confidence 345679999987 5679999999988887 89988 5432 245667889999999994 5543
Q ss_pred HHHHHHhccccCCCCEEEEe
Q 024016 85 KDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~ 104 (274)
.. ..+++|.+||++
T Consensus 215 ~~------~~vk~GavVIDv 228 (282)
T PRK14166 215 RS------DMVKEGVIVVDV 228 (282)
T ss_pred CH------HHcCCCCEEEEe
Confidence 22 236799999986
No 392
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=95.69 E-value=0.024 Score=51.60 Aligned_cols=64 Identities=19% Similarity=0.168 Sum_probs=47.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHH----HHHHHHcCceecc--CchhhccCCCEEEEe
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKR----RDAFESIGVKVLS--DNNAVVEYSDVVVFS 78 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~----~~~l~~~g~~~~~--~~~~~~~~aDiIil~ 78 (274)
.+||.|+|+|.=|.+.++.|.+.|+ +|+++ |.++.. ...+...++.+.. .+.+....+|+|+..
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~----~v~v~-D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~S 76 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGA----EVTVS-DDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKS 76 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCC----eEEEE-cCCCCccchhhhhhhccCceeecCccchhccccCCEEEEC
Confidence 6899999999999999999999998 99999 866544 1222234554322 122456789999986
No 393
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=95.68 E-value=0.07 Score=44.48 Aligned_cols=86 Identities=16% Similarity=0.245 Sum_probs=52.9
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-------------------HHHHH----HHH--cCcee--c-c
Q 024016 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-------------------KRRDA----FES--IGVKV--L-S 63 (274)
Q Consensus 12 ~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~-------------------~~~~~----l~~--~g~~~--~-~ 63 (274)
||.+||+|.+|+.++++|...|+ .+++++ |.+. .|++. +.+ ..+.+ . .
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gv---g~i~iv-D~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~ 76 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGF---GQIHVI-DMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQN 76 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC---CeEEEE-eCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEec
Confidence 68999999999999999999997 356666 4422 12222 222 12221 1 1
Q ss_pred C-------chhhccCCCEEEEeeCcccHHHHHHHhccccCCCCEEEE
Q 024016 64 D-------NNAVVEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVS 103 (274)
Q Consensus 64 ~-------~~~~~~~aDiIil~v~~~~~~~v~~~i~~~l~~~~~vis 103 (274)
. ..+..++.|+||.|+..-..+..+.+..-.. +..+|+
T Consensus 77 ~i~~~~~~~~~f~~~~DvVi~a~Dn~~aR~~ln~~c~~~--~iplI~ 121 (234)
T cd01484 77 KVGPEQDFNDTFFEQFHIIVNALDNIIARRYVNGMLIFL--IVPLIE 121 (234)
T ss_pred cCChhhhchHHHHhCCCEEEECCCCHHHHHHHHHHHHHc--CCCEEE
Confidence 1 1345678999999987666666666544222 344554
No 394
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.67 E-value=0.12 Score=44.49 Aligned_cols=53 Identities=17% Similarity=0.293 Sum_probs=45.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCch
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNN 66 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~ 66 (274)
..+++|.|+|.+|.+.+.+-...|. ++|+.. |.|+++.+..++.|++-+-++.
T Consensus 193 GstvAVfGLG~VGLav~~Gaka~GA---srIIgv-DiN~~Kf~~ak~fGaTe~iNp~ 245 (375)
T KOG0022|consen 193 GSTVAVFGLGGVGLAVAMGAKAAGA---SRIIGV-DINPDKFEKAKEFGATEFINPK 245 (375)
T ss_pred CCEEEEEecchHHHHHHHhHHhcCc---ccEEEE-ecCHHHHHHHHhcCcceecChh
Confidence 3689999999999999999999986 489999 9999999999999986444443
No 395
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=95.66 E-value=0.014 Score=50.76 Aligned_cols=64 Identities=13% Similarity=0.188 Sum_probs=46.3
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceec----c---CchhhccCCCEEEEee
Q 024016 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL----S---DNNAVVEYSDVVVFSV 79 (274)
Q Consensus 11 ~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~----~---~~~~~~~~aDiIil~v 79 (274)
|||.|.|. |.+|+.++..|++.|+ +|++. +|++++...+...++... . +..++++++|+||-+.
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~----~V~~~-~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a 72 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGE----EVRVL-VRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVA 72 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCC----EEEEE-EecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEec
Confidence 47999975 9999999999999999 99999 888766544433343321 1 2234566889988775
No 396
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=95.65 E-value=0.068 Score=45.53 Aligned_cols=89 Identities=13% Similarity=0.148 Sum_probs=47.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH---H--c----Ccee-ccCch---hhccCCCEEEE
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE---S--I----GVKV-LSDNN---AVVEYSDVVVF 77 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~---~--~----g~~~-~~~~~---~~~~~aDiIil 77 (274)
.||.|||.|.+-.....-....|. ...|..+ |++++..+... + . +.++ +.+.. .-+.++|+|++
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~--~~~v~~i-D~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~l 198 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGP--GARVHNI-DIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFL 198 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT----EEEEE-ESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE
T ss_pred ceEEEEcCCCcchHHHHHHHHhCC--CCeEEEE-eCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEE
Confidence 499999999987765543323221 1257788 99997654332 2 1 2232 22222 22468899999
Q ss_pred eeCcc----cHHHHHHHhccccCCCCEEE
Q 024016 78 SVKPQ----VVKDVAMQIRPLLSRKKLLV 102 (274)
Q Consensus 78 ~v~~~----~~~~v~~~i~~~l~~~~~vi 102 (274)
+--.. .-.+++..+..++++|..|+
T Consensus 199 AalVg~~~e~K~~Il~~l~~~m~~ga~l~ 227 (276)
T PF03059_consen 199 AALVGMDAEPKEEILEHLAKHMAPGARLV 227 (276)
T ss_dssp -TT-S----SHHHHHHHHHHHS-TTSEEE
T ss_pred hhhcccccchHHHHHHHHHhhCCCCcEEE
Confidence 96544 67889999999999998777
No 397
>PRK09186 flagellin modification protein A; Provisional
Probab=95.65 E-value=0.1 Score=43.60 Aligned_cols=85 Identities=9% Similarity=0.143 Sum_probs=53.6
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---CcccH
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVV 84 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~~~ 84 (274)
+.++|-|.|. |.+|.++++.|.+.|+ +|.+. +|++++.+.+.+. + ........+.++.. .++++
T Consensus 3 ~~k~vlItGas~giG~~~a~~l~~~g~----~v~~~-~r~~~~~~~~~~~-l------~~~~~~~~~~~~~~Dl~d~~~~ 70 (256)
T PRK09186 3 KGKTILITGAGGLIGSALVKAILEAGG----IVIAA-DIDKEALNELLES-L------GKEFKSKKLSLVELDITDQESL 70 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC----EEEEE-ecChHHHHHHHHH-H------HhhcCCCceeEEEecCCCHHHH
Confidence 4567888875 8999999999999999 99999 9998877655431 0 00001112222222 35567
Q ss_pred HHHHHHhccccCCCCEEEEec
Q 024016 85 KDVAMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~~ 105 (274)
.+++.++...+.+=..+|++.
T Consensus 71 ~~~~~~~~~~~~~id~vi~~A 91 (256)
T PRK09186 71 EEFLSKSAEKYGKIDGAVNCA 91 (256)
T ss_pred HHHHHHHHHHcCCccEEEECC
Confidence 777776655443334677654
No 398
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=95.65 E-value=0.1 Score=43.60 Aligned_cols=78 Identities=13% Similarity=0.238 Sum_probs=50.6
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---CcccHHH
Q 024016 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVVKD 86 (274)
Q Consensus 11 ~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~~~~~ 86 (274)
|+|-|+|. |.+|.++++.|.+.|+ +|++. +|++++.+.+... . ..++.++.. .++.+.+
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~----~V~~~-~r~~~~~~~~~~~-~-----------~~~~~~~~~Dl~~~~~i~~ 63 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGH----KVIAT-GRRQERLQELKDE-L-----------GDNLYIAQLDVRNRAAIEE 63 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHH-h-----------ccceEEEEecCCCHHHHHH
Confidence 57888975 9999999999999999 99999 9998877665431 0 012222222 2445666
Q ss_pred HHHHhccccCCCCEEEEec
Q 024016 87 VAMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 87 v~~~i~~~l~~~~~vis~~ 105 (274)
+++++...+.+=..+|+..
T Consensus 64 ~~~~~~~~~~~id~vi~~a 82 (248)
T PRK10538 64 MLASLPAEWRNIDVLVNNA 82 (248)
T ss_pred HHHHHHHHcCCCCEEEECC
Confidence 6666554443334566553
No 399
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=95.65 E-value=0.026 Score=49.81 Aligned_cols=63 Identities=13% Similarity=0.161 Sum_probs=44.4
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhC-CCCCCCcEEEEeCCCHHHHHHHHH-cCceec-cCc-------hhhccCCCEEEEe
Q 024016 11 FILGFIGA-GKMAESIAKGVAKS-GVLPPDRICTAVHSNLKRRDAFES-IGVKVL-SDN-------NAVVEYSDVVVFS 78 (274)
Q Consensus 11 ~~IgiIG~-G~mG~~~a~~L~~~-g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~-~~~-------~~~~~~aDiIil~ 78 (274)
|||.|.|+ |.+|+.+++.|++. |+ +|++. +|+.++...+.. .++... .|. .++++++|+||=+
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~----~V~~~-~r~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~d~ViH~ 75 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDW----EVYGM-DMQTDRLGDLVNHPRMHFFEGDITINKEWIEYHVKKCDVILPL 75 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCC----eEEEE-eCcHHHHHHhccCCCeEEEeCCCCCCHHHHHHHHcCCCEEEEC
Confidence 68999996 99999999999986 68 99999 887765544433 233321 121 2345689999943
No 400
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=95.64 E-value=0.12 Score=44.40 Aligned_cols=79 Identities=16% Similarity=0.133 Sum_probs=50.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-------------------HHH----HHHHHc--Cce--e
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-------------------KRR----DAFESI--GVK--V 61 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~-------------------~~~----~~l~~~--g~~--~ 61 (274)
+..+|.|+|+|.+|..++++|..+|. .+|+++ |.+. .|+ +.+++. .+. +
T Consensus 18 ~~s~VLIvG~gGLG~EiaKnLalaGV---g~itI~-D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~ 93 (286)
T cd01491 18 QKSNVLISGLGGLGVEIAKNLILAGV---KSVTLH-DTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPYVPVTV 93 (286)
T ss_pred hcCcEEEEcCCHHHHHHHHHHHHcCC---CeEEEE-cCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCCCEEEE
Confidence 34689999999999999999999997 367777 5432 111 223332 222 2
Q ss_pred ccC--chhhccCCCEEEEeeCcccHHHHHHHh
Q 024016 62 LSD--NNAVVEYSDVVVFSVKPQVVKDVAMQI 91 (274)
Q Consensus 62 ~~~--~~~~~~~aDiIil~v~~~~~~~v~~~i 91 (274)
.+. ..+.+.+.|+|+.|..+...+..+.++
T Consensus 94 ~~~~~~~~~l~~fdvVV~~~~~~~~~~~in~~ 125 (286)
T cd01491 94 STGPLTTDELLKFQVVVLTDASLEDQLKINEF 125 (286)
T ss_pred EeccCCHHHHhcCCEEEEecCCHHHHHHHHHH
Confidence 221 245678899999887544333334433
No 401
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.60 E-value=0.038 Score=50.69 Aligned_cols=65 Identities=15% Similarity=0.193 Sum_probs=48.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH--HHHHHHH--cCceecc--CchhhccCCCEEEEee
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK--RRDAFES--IGVKVLS--DNNAVVEYSDVVVFSV 79 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~--~~~~l~~--~g~~~~~--~~~~~~~~aDiIil~v 79 (274)
.-.|.|||.|..|.++|+.|.+.|+ +|+++ |+.+. ..++|.+ .|+.+.. ...+.+.++|+|+..-
T Consensus 6 ~~~~~v~G~G~sG~s~a~~L~~~G~----~v~~~-D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~d~vV~sp 76 (448)
T PRK03803 6 DGLHIVVGLGKTGLSVVRFLARQGI----PFAVM-DSREQPPGLDTLAREFPDVELRCGGFDCELLVQASEIIISP 76 (448)
T ss_pred CCeEEEEeecHhHHHHHHHHHhCCC----eEEEE-eCCCCchhHHHHHhhcCCcEEEeCCCChHHhcCCCEEEECC
Confidence 3579999999999999999999999 99999 86543 2344655 3776532 2334567899888763
No 402
>PRK06180 short chain dehydrogenase; Provisional
Probab=95.59 E-value=0.12 Score=43.97 Aligned_cols=43 Identities=16% Similarity=0.228 Sum_probs=36.0
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES 56 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~ 56 (274)
.+++|.|.|+ |.+|.++++.|.+.|+ +|++. +|++++.+.+.+
T Consensus 3 ~~~~vlVtGasggiG~~la~~l~~~G~----~V~~~-~r~~~~~~~l~~ 46 (277)
T PRK06180 3 SMKTWLITGVSSGFGRALAQAALAAGH----RVVGT-VRSEAARADFEA 46 (277)
T ss_pred CCCEEEEecCCChHHHHHHHHHHhCcC----EEEEE-eCCHHHHHHHHh
Confidence 3467888875 9999999999999999 99999 999887766554
No 403
>PRK08223 hypothetical protein; Validated
Probab=95.57 E-value=0.1 Score=44.76 Aligned_cols=34 Identities=15% Similarity=0.212 Sum_probs=28.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~ 47 (274)
..||.|||+|.+|+.++.+|...|. .+++++ |.+
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~aGV---G~i~lv-D~D 60 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLARLGI---GKFTIA-DFD 60 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHHhCC---CeEEEE-eCC
Confidence 4689999999999999999999997 256666 543
No 404
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.57 E-value=0.053 Score=46.28 Aligned_cols=73 Identities=14% Similarity=0.250 Sum_probs=54.4
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccH
Q 024016 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVV 84 (274)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~ 84 (274)
+...++|.|||- ..+|.+++.-|.+.|. .|+++ +... .+..+.+++||+||.++. |..+
T Consensus 153 ~l~Gk~vvViGrS~iVGkPla~lL~~~~a----tVtic-hs~T--------------~~l~~~~~~ADIvI~AvG~p~~i 213 (282)
T PRK14169 153 DVAGKRVVIVGRSNIVGRPLAGLMVNHDA----TVTIA-HSKT--------------RNLKQLTKEADILVVAVGVPHFI 213 (282)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCC----EEEEE-CCCC--------------CCHHHHHhhCCEEEEccCCcCcc
Confidence 345679999987 5679999999998887 89888 5331 245667889999999995 5543
Q ss_pred HHHHHHhccccCCCCEEEEe
Q 024016 85 KDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~ 104 (274)
.. .++++|.+||++
T Consensus 214 ~~------~~vk~GavVIDv 227 (282)
T PRK14169 214 GA------DAVKPGAVVIDV 227 (282)
T ss_pred CH------HHcCCCcEEEEe
Confidence 21 236799999986
No 405
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.56 E-value=0.057 Score=46.36 Aligned_cols=73 Identities=19% Similarity=0.228 Sum_probs=54.3
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccH
Q 024016 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVV 84 (274)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~ 84 (274)
+...++|.|||- ..+|.+++.-|.+.+. .|+++ +... .+..+.+++||+||.++. |..+
T Consensus 157 ~l~Gk~vvViGrS~iVGkPla~lL~~~~a----TVt~c-hs~T--------------~~l~~~~~~ADIvVsAvGkp~~i 217 (294)
T PRK14187 157 NLSGSDAVVIGRSNIVGKPMACLLLGENC----TVTTV-HSAT--------------RDLADYCSKADILVAAVGIPNFV 217 (294)
T ss_pred CCCCCEEEEECCCccchHHHHHHHhhCCC----EEEEe-CCCC--------------CCHHHHHhhCCEEEEccCCcCcc
Confidence 345679999987 5679999999988887 89988 5421 245677899999999994 5543
Q ss_pred HHHHHHhccccCCCCEEEEe
Q 024016 85 KDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~ 104 (274)
.. .++++|.+||++
T Consensus 218 ~~------~~ik~gaiVIDV 231 (294)
T PRK14187 218 KY------SWIKKGAIVIDV 231 (294)
T ss_pred CH------HHcCCCCEEEEe
Confidence 21 236789999986
No 406
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.56 E-value=0.058 Score=46.17 Aligned_cols=72 Identities=14% Similarity=0.266 Sum_probs=53.8
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccHH
Q 024016 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVVK 85 (274)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~~ 85 (274)
...+++.|||- ..+|.+++.-|.+.+. .|+++ +... .+..+.+++|||||.++. |..+.
T Consensus 157 l~GK~vvViGrS~iVGkPla~lL~~~~A----TVtic-hs~T--------------~~L~~~~~~ADIvV~AvGkp~~i~ 217 (288)
T PRK14171 157 LTGKNVVIIGRSNIVGKPLSALLLKENC----SVTIC-HSKT--------------HNLSSITSKADIVVAAIGSPLKLT 217 (288)
T ss_pred CCCCEEEEECCCCcchHHHHHHHHHCCC----EEEEe-CCCC--------------CCHHHHHhhCCEEEEccCCCCccC
Confidence 45678999987 5679999999988887 89988 5321 245677889999999994 55332
Q ss_pred HHHHHhccccCCCCEEEEe
Q 024016 86 DVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 86 ~v~~~i~~~l~~~~~vis~ 104 (274)
. ..+++|.+||++
T Consensus 218 ~------~~vk~GavVIDv 230 (288)
T PRK14171 218 A------EYFNPESIVIDV 230 (288)
T ss_pred H------HHcCCCCEEEEe
Confidence 1 236799999986
No 407
>PRK05875 short chain dehydrogenase; Provisional
Probab=95.55 E-value=0.14 Score=43.49 Aligned_cols=87 Identities=14% Similarity=0.103 Sum_probs=53.6
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---Cccc
Q 024016 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQV 83 (274)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~~ 83 (274)
|+.++|-|.|+ |.+|..+++.|.+.|+ +|++. +|++++.+.+.+. +. +.....++.++.. .++.
T Consensus 5 ~~~k~vlItGasg~IG~~la~~l~~~G~----~V~~~-~r~~~~~~~~~~~-l~------~~~~~~~~~~~~~Dl~~~~~ 72 (276)
T PRK05875 5 FQDRTYLVTGGGSGIGKGVAAGLVAAGA----AVMIV-GRNPDKLAAAAEE-IE------ALKGAGAVRYEPADVTDEDQ 72 (276)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC----eEEEE-eCCHHHHHHHHHH-HH------hccCCCceEEEEcCCCCHHH
Confidence 45678999986 8999999999999999 99999 8988766554331 00 0000123333333 2345
Q ss_pred HHHHHHHhccccCCCCEEEEecC
Q 024016 84 VKDVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 84 ~~~v~~~i~~~l~~~~~vis~~~ 106 (274)
+..+++++...+.+=..+|+..+
T Consensus 73 ~~~~~~~~~~~~~~~d~li~~ag 95 (276)
T PRK05875 73 VARAVDAATAWHGRLHGVVHCAG 95 (276)
T ss_pred HHHHHHHHHHHcCCCCEEEECCC
Confidence 56666655443333345666543
No 408
>PRK05866 short chain dehydrogenase; Provisional
Probab=95.54 E-value=0.075 Score=45.84 Aligned_cols=83 Identities=14% Similarity=0.172 Sum_probs=52.7
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---CcccHH
Q 024016 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVVK 85 (274)
Q Consensus 10 ~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~~~~ 85 (274)
.++|-|.|+ |.+|.++++.|.+.|+ +|++. +|++++.+.+.+.- .+ ...++.++.. .++.+.
T Consensus 40 ~k~vlItGasggIG~~la~~La~~G~----~Vi~~-~R~~~~l~~~~~~l-------~~--~~~~~~~~~~Dl~d~~~v~ 105 (293)
T PRK05866 40 GKRILLTGASSGIGEAAAEQFARRGA----TVVAV-ARREDLLDAVADRI-------TR--AGGDAMAVPCDLSDLDAVD 105 (293)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHHH-------Hh--cCCcEEEEEccCCCHHHHH
Confidence 367888875 9999999999999999 99999 99988776654310 00 0112222222 344566
Q ss_pred HHHHHhccccCCCCEEEEecC
Q 024016 86 DVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 86 ~v~~~i~~~l~~~~~vis~~~ 106 (274)
++++.+...+.+=..+|++.+
T Consensus 106 ~~~~~~~~~~g~id~li~~AG 126 (293)
T PRK05866 106 ALVADVEKRIGGVDILINNAG 126 (293)
T ss_pred HHHHHHHHHcCCCCEEEECCC
Confidence 677665544433346676543
No 409
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=95.54 E-value=0.016 Score=49.65 Aligned_cols=62 Identities=21% Similarity=0.181 Sum_probs=44.0
Q ss_pred eEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCcee----ccC---chhhc------cC-CCEEE
Q 024016 12 ILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV----LSD---NNAVV------EY-SDVVV 76 (274)
Q Consensus 12 ~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~----~~~---~~~~~------~~-aDiIi 76 (274)
+|.|+|+ |.+|+.+++.|++.|+ +|.+. .|++++... .++.. ..| ..++. +. +|.|+
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~----~V~~~-~R~~~~~~~---~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~ 72 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASV----PFLVA-SRSSSSSAG---PNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVY 72 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCC----cEEEE-eCCCccccC---CCCccccccCCCHHHHHHHHhcccCcCCceeEEE
Confidence 4788877 9999999999999999 99999 999875431 22211 112 22333 45 89999
Q ss_pred EeeCc
Q 024016 77 FSVKP 81 (274)
Q Consensus 77 l~v~~ 81 (274)
++.++
T Consensus 73 ~~~~~ 77 (285)
T TIGR03649 73 LVAPP 77 (285)
T ss_pred EeCCC
Confidence 88763
No 410
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=95.54 E-value=0.023 Score=49.44 Aligned_cols=98 Identities=18% Similarity=0.184 Sum_probs=57.5
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCC-C-----CCCcEEEEeCCCHHHHHHHHHcC-ceeccCc-----hhhc--cCCC
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGV-L-----PPDRICTAVHSNLKRRDAFESIG-VKVLSDN-----NAVV--EYSD 73 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~-~-----~~~~v~v~~~r~~~~~~~l~~~g-~~~~~~~-----~~~~--~~aD 73 (274)
|+.++|+++|+|++|+.+++-|.+++. + ...+|....+|+....+.+.-.+ ....++. .+.+ .+.|
T Consensus 1 ~~~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 80 (333)
T COG0460 1 MKTVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVRDLDLLNAEVWTTDGALSLGDEVLLDEDID 80 (333)
T ss_pred CceEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcccccccchhhheecccccccHhhhccccCC
Confidence 456799999999999999999987532 0 01133322266654443111112 1122222 3333 3568
Q ss_pred EEEEeeCc--ccHHHHHHHhccccCCCCEEEEecC
Q 024016 74 VVVFSVKP--QVVKDVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 74 iIil~v~~--~~~~~v~~~i~~~l~~~~~vis~~~ 106 (274)
+|+-+++. ...++ +..+...+..|+.||+.-+
T Consensus 81 vvve~~~~d~~~~~~-~~~~~~al~~GkhVVTaNK 114 (333)
T COG0460 81 VVVELVGGDVEPAEP-ADLYLKALENGKHVVTANK 114 (333)
T ss_pred EEEecCcccCCchhh-HHHHHHHHHcCCeEECCCc
Confidence 89988865 33554 5666667778888885433
No 411
>PLN02427 UDP-apiose/xylose synthase
Probab=95.54 E-value=0.028 Score=50.39 Aligned_cols=67 Identities=6% Similarity=0.158 Sum_probs=46.6
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHhC-CCCCCCcEEEEeCCCHHHHHHHHHc-------Cceec----cC---chhhccC
Q 024016 8 AESFILGFIG-AGKMAESIAKGVAKS-GVLPPDRICTAVHSNLKRRDAFESI-------GVKVL----SD---NNAVVEY 71 (274)
Q Consensus 8 ~~~~~IgiIG-~G~mG~~~a~~L~~~-g~~~~~~v~v~~~r~~~~~~~l~~~-------g~~~~----~~---~~~~~~~ 71 (274)
.+.|||.|.| +|-+|+.+++.|++. |+ +|++. +|+.++.+.+... +++.. .+ ..+++++
T Consensus 12 ~~~~~VlVTGgtGfIGs~lv~~L~~~~g~----~V~~l-~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~ 86 (386)
T PLN02427 12 IKPLTICMIGAGGFIGSHLCEKLMTETPH----KVLAL-DVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKM 86 (386)
T ss_pred ccCcEEEEECCcchHHHHHHHHHHhcCCC----EEEEE-ecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhc
Confidence 3457999997 599999999999998 57 89999 8887666554322 22221 11 2345667
Q ss_pred CCEEEEee
Q 024016 72 SDVVVFSV 79 (274)
Q Consensus 72 aDiIil~v 79 (274)
+|+||=+.
T Consensus 87 ~d~ViHlA 94 (386)
T PLN02427 87 ADLTINLA 94 (386)
T ss_pred CCEEEEcc
Confidence 89888654
No 412
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=95.52 E-value=0.017 Score=48.70 Aligned_cols=55 Identities=13% Similarity=0.181 Sum_probs=41.1
Q ss_pred cccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhcc-CCCEEE
Q 024016 17 GAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVE-YSDVVV 76 (274)
Q Consensus 17 G~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~-~aDiIi 76 (274)
|+|.+|+++...|.+.|| +|++. .|++.+.+......++..+...+... ++|+||
T Consensus 6 gTGlIG~~L~~~L~~~gh----~v~il-tR~~~~~~~~~~~~v~~~~~~~~~~~~~~DavI 61 (297)
T COG1090 6 GTGLIGRALTARLRKGGH----QVTIL-TRRPPKASQNLHPNVTLWEGLADALTLGIDAVI 61 (297)
T ss_pred cccchhHHHHHHHHhCCC----eEEEE-EcCCcchhhhcCccccccchhhhcccCCCCEEE
Confidence 789999999999999999 99999 99987766544334333333344444 699888
No 413
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.50 E-value=0.055 Score=49.59 Aligned_cols=66 Identities=17% Similarity=0.196 Sum_probs=48.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHH--HHHHHH--cCceeccC--chhhccCCCEEEEee
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKR--RDAFES--IGVKVLSD--NNAVVEYSDVVVFSV 79 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~--~~~l~~--~g~~~~~~--~~~~~~~aDiIil~v 79 (274)
..++|.|+|.|..|.+.++.|.+.|+ +|+++ |+++.. .+++.+ .|+.+... ..+...++|+||.+.
T Consensus 4 ~~~~~~v~G~g~~G~~~a~~l~~~g~----~v~~~-d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~sp 75 (445)
T PRK04308 4 QNKKILVAGLGGTGISMIAYLRKNGA----EVAAY-DAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSP 75 (445)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-eCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECC
Confidence 45689999999999999999999999 99999 875532 344544 37655321 223346799999875
No 414
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=95.48 E-value=0.14 Score=45.03 Aligned_cols=91 Identities=14% Similarity=0.052 Sum_probs=53.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCC--CHHHHHHHHH----cC-----c--------------eec--c
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS--NLKRRDAFES----IG-----V--------------KVL--S 63 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r--~~~~~~~l~~----~g-----~--------------~~~--~ 63 (274)
+||||.|.|+||+.+.+.+.+.+. .++...++. +++....|.+ +| + .+. .
T Consensus 3 ikigInG~GRiGr~v~r~~~~~~~---~~ivaind~~~~~~~~a~ll~yDs~~g~~~~~v~~~g~~l~~~g~~i~v~~~~ 79 (334)
T PRK08955 3 IKVGINGFGRIGRLALRAAWDWPE---LEFVQINDPAGDAATLAHLLEFDSVHGRWHHEVTAEGDAIVINGKRIRTTQNK 79 (334)
T ss_pred eEEEEECcCHHHHHHHHHHHhCCC---cEEEEecCCCCCHHHHHHHhhhhccCCCCCCCEEEcCCEEEECCEEEEEEecC
Confidence 699999999999999999886542 156555242 4455555554 22 1 111 0
Q ss_pred Cchh-hccCCCEEEEeeCcccHHHHHHHhccccCCCCEEEEecCC
Q 024016 64 DNNA-VVEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAG 107 (274)
Q Consensus 64 ~~~~-~~~~aDiIil~v~~~~~~~v~~~i~~~l~~~~~vis~~~g 107 (274)
++.+ ..+++|+||.|+....-++.... ++..|...|..++.
T Consensus 80 ~~~~~~w~gvDiVle~tG~~~s~~~a~~---hl~aGak~V~iSap 121 (334)
T PRK08955 80 AIADTDWSGCDVVIEASGVMKTKALLQA---YLDQGVKRVVVTAP 121 (334)
T ss_pred ChhhCCccCCCEEEEccchhhcHHHHHH---HHHCCCEEEEECCC
Confidence 2222 24489999999976655444433 23455555555443
No 415
>PRK10537 voltage-gated potassium channel; Provisional
Probab=95.45 E-value=0.16 Score=45.75 Aligned_cols=68 Identities=9% Similarity=-0.031 Sum_probs=46.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCcee-ccCc--hh-----hccCCCEEEEeeCc
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-LSDN--NA-----VVEYSDVVVFSVKP 81 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~-~~~~--~~-----~~~~aDiIil~v~~ 81 (274)
+..|-|+|.|.+|..+++.|.+.|+ ++.+. +.++ .+...+.|..+ ..|+ .+ -+++|+.|++++++
T Consensus 240 k~HvII~G~g~lg~~v~~~L~~~g~----~vvVI-d~d~--~~~~~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t~d 312 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGLRQRGQ----AVTVI-VPLG--LEHRLPDDADLIPGDSSDSAVLKKAGAARARAILALRDN 312 (393)
T ss_pred CCeEEEECCChHHHHHHHHHHHCCC----CEEEE-ECch--hhhhccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcCCC
Confidence 3469999999999999999999988 88888 6553 23333334322 1221 22 25689999988876
Q ss_pred ccH
Q 024016 82 QVV 84 (274)
Q Consensus 82 ~~~ 84 (274)
+..
T Consensus 313 D~~ 315 (393)
T PRK10537 313 DAD 315 (393)
T ss_pred hHH
Confidence 643
No 416
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.45 E-value=0.061 Score=45.99 Aligned_cols=73 Identities=10% Similarity=0.273 Sum_probs=54.3
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccH
Q 024016 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVV 84 (274)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~ 84 (274)
+.+.+++.|||- ..+|.+++.-|.+.+. .|+++ +... .+..+.+++||+||.++. |..+
T Consensus 155 ~l~Gk~vvViGrS~iVG~Pla~lL~~~~a----tVt~c-hs~t--------------~~l~~~~~~ADIvI~AvG~p~~i 215 (284)
T PRK14190 155 DISGKHVVVVGRSNIVGKPVGQLLLNENA----TVTYC-HSKT--------------KNLAELTKQADILIVAVGKPKLI 215 (284)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCC----EEEEE-eCCc--------------hhHHHHHHhCCEEEEecCCCCcC
Confidence 345689999986 6789999999998887 89888 5321 245567899999999995 4422
Q ss_pred HHHHHHhccccCCCCEEEEe
Q 024016 85 KDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~ 104 (274)
. ..++++|.+||++
T Consensus 216 ~------~~~ik~gavVIDv 229 (284)
T PRK14190 216 T------ADMVKEGAVVIDV 229 (284)
T ss_pred C------HHHcCCCCEEEEe
Confidence 1 1235799999986
No 417
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.43 E-value=0.061 Score=45.93 Aligned_cols=73 Identities=19% Similarity=0.268 Sum_probs=54.4
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccH
Q 024016 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVV 84 (274)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~ 84 (274)
....+++.|||- ..+|.+++.-|.+.+. .|+++ +... .+..+.+++|||||.++. |..+
T Consensus 154 ~l~Gk~vvVvGrS~iVGkPla~lL~~~~a----tVtic-hs~T--------------~~l~~~~~~ADIvI~AvG~~~~i 214 (284)
T PRK14170 154 QIEGKRAVVIGRSNIVGKPVAQLLLNENA----TVTIA-HSRT--------------KDLPQVAKEADILVVATGLAKFV 214 (284)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCC----EEEEe-CCCC--------------CCHHHHHhhCCEEEEecCCcCcc
Confidence 345679999987 4679999999998887 89988 5321 245677889999999995 5533
Q ss_pred HHHHHHhccccCCCCEEEEe
Q 024016 85 KDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~ 104 (274)
.. ..+++|.+||++
T Consensus 215 ~~------~~vk~GavVIDv 228 (284)
T PRK14170 215 KK------DYIKPGAIVIDV 228 (284)
T ss_pred CH------HHcCCCCEEEEc
Confidence 21 236799999986
No 418
>PRK07825 short chain dehydrogenase; Provisional
Probab=95.42 E-value=0.12 Score=43.83 Aligned_cols=81 Identities=16% Similarity=0.179 Sum_probs=52.6
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeccCchhhccCCCEEEEeeCcccHHH
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVVKD 86 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDiIil~v~~~~~~~ 86 (274)
+.++|.|.|+ |.+|..+++.|.+.|+ +|.+. +|++++.+.+.+ .+ . .+ .-.+|+ ..++.+.+
T Consensus 4 ~~~~ilVtGasggiG~~la~~l~~~G~----~v~~~-~r~~~~~~~~~~~~~-~-----~~-~~~~D~----~~~~~~~~ 67 (273)
T PRK07825 4 RGKVVAITGGARGIGLATARALAALGA----RVAIG-DLDEALAKETAAELG-L-----VV-GGPLDV----TDPASFAA 67 (273)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHHhc-c-----ce-EEEccC----CCHHHHHH
Confidence 4568888876 9999999999999999 99999 999888766543 22 0 00 011221 24556667
Q ss_pred HHHHhccccCCCCEEEEec
Q 024016 87 VAMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 87 v~~~i~~~l~~~~~vis~~ 105 (274)
+++++.....+=..+|+..
T Consensus 68 ~~~~~~~~~~~id~li~~a 86 (273)
T PRK07825 68 FLDAVEADLGPIDVLVNNA 86 (273)
T ss_pred HHHHHHHHcCCCCEEEECC
Confidence 7766654433334666653
No 419
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=95.42 E-value=0.025 Score=52.16 Aligned_cols=42 Identities=21% Similarity=0.284 Sum_probs=34.5
Q ss_pred CCCCCCCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024016 1 MDAFPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (274)
Q Consensus 1 ~~~~~~~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~ 47 (274)
|.+-+.+++.++|+|||+|.-|.+.|+.|.+.|+ +++++ .++
T Consensus 1 ~~~~~~~~~~~~VaIIGAG~aGL~aA~~l~~~G~----~v~vf-E~~ 42 (461)
T PLN02172 1 MAPAQNPINSQHVAVIGAGAAGLVAARELRREGH----TVVVF-ERE 42 (461)
T ss_pred CCCcccCCCCCCEEEECCcHHHHHHHHHHHhcCC----eEEEE-ecC
Confidence 4444566667899999999999999999999998 78777 554
No 420
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.40 E-value=0.067 Score=46.01 Aligned_cols=73 Identities=12% Similarity=0.249 Sum_probs=53.5
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhC----CCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-
Q 024016 7 PAESFILGFIGA-GKMAESIAKGVAKS----GVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK- 80 (274)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~~a~~L~~~----g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~- 80 (274)
+...++|.|||- ..+|.+++.-|.+. +. .|+++ .+.. .+..+.+++||+||.++.
T Consensus 158 ~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~a----tVtv~-hs~T--------------~~l~~~~~~ADIvVsAvGk 218 (297)
T PRK14168 158 ETSGAEVVVVGRSNIVGKPIANMMTQKGPGANA----TVTIV-HTRS--------------KNLARHCQRADILIVAAGV 218 (297)
T ss_pred CCCCCEEEEECCCCcccHHHHHHHHhcccCCCC----EEEEe-cCCC--------------cCHHHHHhhCCEEEEecCC
Confidence 445689999986 67899999999887 44 78888 5431 245677899999999994
Q ss_pred cccHHHHHHHhccccCCCCEEEEe
Q 024016 81 PQVVKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 81 ~~~~~~v~~~i~~~l~~~~~vis~ 104 (274)
|..+.. ..+++|.+||++
T Consensus 219 p~~i~~------~~ik~gavVIDv 236 (297)
T PRK14168 219 PNLVKP------EWIKPGATVIDV 236 (297)
T ss_pred cCccCH------HHcCCCCEEEec
Confidence 553321 236799999986
No 421
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.39 E-value=0.065 Score=45.76 Aligned_cols=72 Identities=14% Similarity=0.299 Sum_probs=53.8
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccHH
Q 024016 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVVK 85 (274)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~~ 85 (274)
.+.++|.|||- ..+|.+++.-|.+.|. .|+++ ++.. .+..+.+++||+||.++. |..+.
T Consensus 156 l~Gk~vvViGrS~~VGkPla~lL~~~~A----TVt~c-hs~T--------------~dl~~~~k~ADIvIsAvGkp~~i~ 216 (282)
T PRK14180 156 TEGAYAVVVGASNVVGKPVSQLLLNAKA----TVTTC-HRFT--------------TDLKSHTTKADILIVAVGKPNFIT 216 (282)
T ss_pred CCCCEEEEECCCCcchHHHHHHHHHCCC----EEEEE-cCCC--------------CCHHHHhhhcCEEEEccCCcCcCC
Confidence 45679999986 5689999999988887 89988 5432 245566889999999995 55432
Q ss_pred HHHHHhccccCCCCEEEEe
Q 024016 86 DVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 86 ~v~~~i~~~l~~~~~vis~ 104 (274)
. ..+++|.+||++
T Consensus 217 ~------~~vk~gavVIDv 229 (282)
T PRK14180 217 A------DMVKEGAVVIDV 229 (282)
T ss_pred H------HHcCCCcEEEEe
Confidence 2 236799999986
No 422
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.38 E-value=0.14 Score=42.57 Aligned_cols=83 Identities=18% Similarity=0.210 Sum_probs=53.1
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---CcccH
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVV 84 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~~~ 84 (274)
+.++|.|+|+ |.+|..+++.|++.|+ +|++. +|++++.+.+.+. +. . ..++.++.. .++.+
T Consensus 4 ~~~~vlItGasg~iG~~l~~~l~~~G~----~V~~~-~r~~~~~~~~~~~-~~------~---~~~~~~~~~D~~~~~~~ 68 (251)
T PRK07231 4 EGKVAIVTGASSGIGEGIARRFAAEGA----RVVVT-DRNEEAAERVAAE-IL------A---GGRAIAVAADVSDEADV 68 (251)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHH-Hh------c---CCeEEEEECCCCCHHHH
Confidence 3468999975 9999999999999999 99999 9998776655431 00 0 123333332 34456
Q ss_pred HHHHHHhccccCCCCEEEEecC
Q 024016 85 KDVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~~~ 106 (274)
..++.++.+...+=..||+..+
T Consensus 69 ~~~~~~~~~~~~~~d~vi~~ag 90 (251)
T PRK07231 69 EAAVAAALERFGSVDILVNNAG 90 (251)
T ss_pred HHHHHHHHHHhCCCCEEEECCC
Confidence 6666665433333246676543
No 423
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=95.34 E-value=0.057 Score=48.71 Aligned_cols=74 Identities=19% Similarity=0.282 Sum_probs=51.5
Q ss_pred CCCCeEEEEcccHHHHHH-HHHHH-hCCCCCCCcEEEEeCCCHHHHHH-------HHH-cC----ceeccCchhhccCCC
Q 024016 8 AESFILGFIGAGKMAESI-AKGVA-KSGVLPPDRICTAVHSNLKRRDA-------FES-IG----VKVLSDNNAVVEYSD 73 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~-a~~L~-~~g~~~~~~v~v~~~r~~~~~~~-------l~~-~g----~~~~~~~~~~~~~aD 73 (274)
|+++||+|||.|.-..+- ..+++ ..--++..++.++ |.++++.+. +.+ .| +..++|..+++++||
T Consensus 1 m~~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~-Did~~r~~~i~~~~~~~v~~~g~~~kv~~ttd~~eAl~gAd 79 (442)
T COG1486 1 MKKFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALY-DIDEERLKIIAILAKKLVEEAGAPVKVEATTDRREALEGAD 79 (442)
T ss_pred CCcceEEEECCCccccHHHHHHHHhcCccCCcceEEEE-eCCHHHHHHHHHHHHHHHHhhCCCeEEEEecCHHHHhcCCC
Confidence 457899999999987653 22232 2222345588999 999888652 222 33 345688899999999
Q ss_pred EEEEeeCcc
Q 024016 74 VVVFSVKPQ 82 (274)
Q Consensus 74 iIil~v~~~ 82 (274)
+|+.+..+.
T Consensus 80 fVi~~~rvG 88 (442)
T COG1486 80 FVITQIRVG 88 (442)
T ss_pred EEEEEEeeC
Confidence 999998654
No 424
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.34 E-value=0.089 Score=44.91 Aligned_cols=72 Identities=17% Similarity=0.242 Sum_probs=53.5
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccHH
Q 024016 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVVK 85 (274)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~~ 85 (274)
.+.+++.|||- ..+|.+++.-|.+.+. .|+++ +... .+..+.+++||+||.++. +..+.
T Consensus 155 l~Gk~vvViGrS~iVGkPla~lL~~~~A----tVtic-hs~T--------------~nl~~~~~~ADIvI~AvGk~~~i~ 215 (282)
T PRK14182 155 PKGKRALVVGRSNIVGKPMAMMLLERHA----TVTIA-HSRT--------------ADLAGEVGRADILVAAIGKAELVK 215 (282)
T ss_pred CCCCEEEEECCCCcchHHHHHHHHHCCC----EEEEe-CCCC--------------CCHHHHHhhCCEEEEecCCcCccC
Confidence 35679999987 5679999999988887 89888 5431 234567889999999995 44332
Q ss_pred HHHHHhccccCCCCEEEEe
Q 024016 86 DVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 86 ~v~~~i~~~l~~~~~vis~ 104 (274)
. ..+++|.+||++
T Consensus 216 ~------~~ik~gaiVIDv 228 (282)
T PRK14182 216 G------AWVKEGAVVIDV 228 (282)
T ss_pred H------HHcCCCCEEEEe
Confidence 1 236799999986
No 425
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=95.33 E-value=0.17 Score=44.55 Aligned_cols=87 Identities=18% Similarity=0.160 Sum_probs=57.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceec-c----Cchhhcc---CCCEEEEeeCc
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-S----DNNAVVE---YSDVVVFSVKP 81 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~-~----~~~~~~~---~aDiIil~v~~ 81 (274)
..+|.|+|+|.+|...++.+...|. .+|++. ++++++.+.+.+.|+... + +..+..+ ..|+||-|+..
T Consensus 170 g~~VlV~G~G~vG~~aiqlak~~G~---~~Vi~~-~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~ 245 (343)
T PRK09880 170 GKRVFVSGVGPIGCLIVAAVKTLGA---AEIVCA-DVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGH 245 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC---cEEEEE-eCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCCC
Confidence 4589999999999988887777776 257888 999999988888886432 1 1112111 36888888764
Q ss_pred -ccHHHHHHHhccccCCCCEEEEe
Q 024016 82 -QVVKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 82 -~~~~~v~~~i~~~l~~~~~vis~ 104 (274)
..+...++- ++++..++.+
T Consensus 246 ~~~~~~~~~~----l~~~G~iv~~ 265 (343)
T PRK09880 246 PSSINTCLEV----TRAKGVMVQV 265 (343)
T ss_pred HHHHHHHHHH----hhcCCEEEEE
Confidence 334444433 3455555544
No 426
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=95.33 E-value=0.086 Score=48.76 Aligned_cols=35 Identities=14% Similarity=0.270 Sum_probs=31.2
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~ 47 (274)
...++|.|||.|..|...|..|.+.|+ +|+++ ++.
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~----~V~vi-e~~ 175 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARAGH----KVTVF-ERA 175 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCC----cEEEE-ecC
Confidence 345799999999999999999999999 99999 765
No 427
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=95.33 E-value=0.23 Score=42.77 Aligned_cols=104 Identities=19% Similarity=0.278 Sum_probs=66.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH---------------H--cC--ceeccCchhhccC
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE---------------S--IG--VKVLSDNNAVVEY 71 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~---------------~--~g--~~~~~~~~~~~~~ 71 (274)
+||+-||+|-+|.+-..-+... .+.-+|++. |.+..+..... + .| +-..++.+..+.+
T Consensus 2 ~kiccigagyvggptcavia~k--cp~i~vtvv-d~s~~ri~~wnsd~lpiyepgldevv~~crgknlffstdiekai~e 78 (481)
T KOG2666|consen 2 VKICCIGAGYVGGPTCAVIALK--CPDIEVTVV-DISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLFFSTDIEKAIKE 78 (481)
T ss_pred ceEEEecCcccCCcchheeeec--CCceEEEEE-ecCchHhhcccCCCCcccCCCHHHHHHHhcCCceeeecchHHHhhh
Confidence 5899999999999877655432 233467777 88777755432 1 12 3355777888999
Q ss_pred CCEEEEeeC-c-c-------------cHHHHHHHhccccCCCCEEEEecCCCCH---HHHHHhhC
Q 024016 72 SDVVVFSVK-P-Q-------------VVKDVAMQIRPLLSRKKLLVSVAAGVKL---KDLQEWTG 118 (274)
Q Consensus 72 aDiIil~v~-~-~-------------~~~~v~~~i~~~l~~~~~vis~~~g~~~---~~l~~~~~ 118 (274)
+|+||+.|. | . .++.....|.+.-...++|+.- ++++. +.+...+.
T Consensus 79 adlvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivvek-stvpv~aaesi~~il~ 142 (481)
T KOG2666|consen 79 ADLVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVVEK-STVPVKAAESIEKILN 142 (481)
T ss_pred cceEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEEee-ccccchHHHHHHHHHh
Confidence 999999983 2 1 2344445566655566777743 33443 45555554
No 428
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=95.31 E-value=0.02 Score=49.60 Aligned_cols=92 Identities=10% Similarity=0.153 Sum_probs=58.8
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCC-HHHHHH--HHHcCceeccCchhhccCCCEEEEeeCcccH
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSN-LKRRDA--FESIGVKVLSDNNAVVEYSDVVVFSVKPQVV 84 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~-~~~~~~--l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~ 84 (274)
..++|+| |+ |.+|..|.+.|.+..+ +-.++.++ ... .+.-+. +....+.+-.-..+..++.|++|+ .+.+..
T Consensus 2 ~~~~iAi-GATg~VG~~~l~~Leer~f-pv~~l~l~-~s~~~s~gk~i~f~g~~~~V~~l~~~~f~~vDia~f-ag~~~s 77 (322)
T PRK06901 2 ATLNIAI-AAEFELSEKLLEALEQSDL-EIEQISIV-EIEPFGEEQGIRFNNKAVEQIAPEEVEWADFNYVFF-AGKMAQ 77 (322)
T ss_pred CcceEEE-ecCcHHHHHHHHHHHhcCC-chhheeec-ccccccCCCEEEECCEEEEEEECCccCcccCCEEEE-cCHHHH
Confidence 4578999 98 9999999999998887 55566666 332 111111 111122232222334678999999 777766
Q ss_pred HHHHHHhccccCCCCEEEEecCC
Q 024016 85 KDVAMQIRPLLSRKKLLVSVAAG 107 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~~~g 107 (274)
++...... ..|.+||+.++.
T Consensus 78 ~~~ap~a~---~aG~~VIDnSsa 97 (322)
T PRK06901 78 AEHLAQAA---EAGCIVIDLYGI 97 (322)
T ss_pred HHHHHHHH---HCCCEEEECChH
Confidence 66655433 578999987654
No 429
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=95.31 E-value=0.08 Score=43.99 Aligned_cols=53 Identities=26% Similarity=0.319 Sum_probs=43.6
Q ss_pred EEEEeCCCHHHHHHHHH-cCceeccCchhhc-cCCCEEEEeeCcccHHHHHHHhcc
Q 024016 40 ICTAVHSNLKRRDAFES-IGVKVLSDNNAVV-EYSDVVVFSVKPQVVKDVAMQIRP 93 (274)
Q Consensus 40 v~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~-~~aDiIil~v~~~~~~~v~~~i~~ 93 (274)
+.+| |+++++++.+.+ .|+..+++.++++ .+.|+|++|+|++...+...+...
T Consensus 5 vaV~-D~~~e~a~~~a~~~g~~~~~d~~eLl~~~vDaVviatp~~~H~e~a~~aL~ 59 (229)
T TIGR03855 5 AAVY-DRNPKDAKELAERCGAKIVSDFDEFLPEDVDIVVEAASQEAVKEYAEKILK 59 (229)
T ss_pred EEEE-CCCHHHHHHHHHHhCCceECCHHHHhcCCCCEEEECCChHHHHHHHHHHHH
Confidence 4567 999999988877 7787888888875 579999999999998888776653
No 430
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.27 E-value=0.067 Score=49.22 Aligned_cols=63 Identities=22% Similarity=0.274 Sum_probs=46.3
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH-HH----HHHHHcCceeccC--ch-----hhccCCCEEEEee
Q 024016 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK-RR----DAFESIGVKVLSD--NN-----AVVEYSDVVVFSV 79 (274)
Q Consensus 12 ~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~-~~----~~l~~~g~~~~~~--~~-----~~~~~aDiIil~v 79 (274)
||.|||.|..|.+.|+.|.+.|+ +|.++ |+++. .. +.+.+.|+++... .. +...+.|+|+.+-
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~----~V~~~-D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s~ 76 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGW----EVVVS-DRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVVSP 76 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCC----EEEEE-CCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEECC
Confidence 79999999999999999999999 99999 87653 22 2355567765321 11 2456789988854
No 431
>PRK12829 short chain dehydrogenase; Provisional
Probab=95.23 E-value=0.15 Score=42.72 Aligned_cols=83 Identities=17% Similarity=0.141 Sum_probs=53.1
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---Cccc
Q 024016 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQV 83 (274)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~~ 83 (274)
++.+++.|+|. |.+|..+++.|++.|+ +|++. +|+++..+.+.+..- +..+.++.. .++.
T Consensus 9 ~~~~~vlItGa~g~iG~~~a~~L~~~g~----~V~~~-~r~~~~~~~~~~~~~-----------~~~~~~~~~D~~~~~~ 72 (264)
T PRK12829 9 LDGLRVLVTGGASGIGRAIAEAFAEAGA----RVHVC-DVSEAALAATAARLP-----------GAKVTATVADVADPAQ 72 (264)
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHHHh-----------cCceEEEEccCCCHHH
Confidence 35578999965 9999999999999999 99999 998876665543210 012222222 3444
Q ss_pred HHHHHHHhccccCCCCEEEEecC
Q 024016 84 VKDVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 84 ~~~v~~~i~~~l~~~~~vis~~~ 106 (274)
+.++++++...+.+=..||+..+
T Consensus 73 ~~~~~~~~~~~~~~~d~vi~~ag 95 (264)
T PRK12829 73 VERVFDTAVERFGGLDVLVNNAG 95 (264)
T ss_pred HHHHHHHHHHHhCCCCEEEECCC
Confidence 56666665444434356666544
No 432
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=95.23 E-value=0.17 Score=44.36 Aligned_cols=87 Identities=16% Similarity=0.134 Sum_probs=57.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCc-hhhccCCCEEEEeeCcccHHHHH
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDN-NAVVEYSDVVVFSVKPQVVKDVA 88 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~-~~~~~~aDiIil~v~~~~~~~v~ 88 (274)
..+|.|.|+|.+|...++.....|. +|++. ++++++.+.+++.|+...-+. ....+..|+++.++... +.+
T Consensus 166 g~~VlV~G~g~iG~~a~~~a~~~G~----~vi~~-~~~~~~~~~a~~~Ga~~vi~~~~~~~~~~d~~i~~~~~~---~~~ 237 (329)
T TIGR02822 166 GGRLGLYGFGGSAHLTAQVALAQGA----TVHVM-TRGAAARRLALALGAASAGGAYDTPPEPLDAAILFAPAG---GLV 237 (329)
T ss_pred CCEEEEEcCCHHHHHHHHHHHHCCC----eEEEE-eCChHHHHHHHHhCCceeccccccCcccceEEEECCCcH---HHH
Confidence 4589999999999988877777786 78888 899999888888887532221 11123578877776432 223
Q ss_pred HHhccccCCCCEEEEe
Q 024016 89 MQIRPLLSRKKLLVSV 104 (274)
Q Consensus 89 ~~i~~~l~~~~~vis~ 104 (274)
......++++..++..
T Consensus 238 ~~~~~~l~~~G~~v~~ 253 (329)
T TIGR02822 238 PPALEALDRGGVLAVA 253 (329)
T ss_pred HHHHHhhCCCcEEEEE
Confidence 3333345565566544
No 433
>PRK12939 short chain dehydrogenase; Provisional
Probab=95.22 E-value=0.12 Score=42.89 Aligned_cols=84 Identities=14% Similarity=0.117 Sum_probs=53.3
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---CcccH
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVV 84 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~~~ 84 (274)
+.++|.|+|. |.+|..+++.|.+.|+ +|.+. +|++++.+.+.+. + .. ...++.++.. .++.+
T Consensus 6 ~~~~vlItGa~g~iG~~la~~l~~~G~----~v~~~-~r~~~~~~~~~~~-~------~~--~~~~~~~~~~Dl~~~~~~ 71 (250)
T PRK12939 6 AGKRALVTGAARGLGAAFAEALAEAGA----TVAFN-DGLAAEARELAAA-L------EA--AGGRAHAIAADLADPASV 71 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHcCC----EEEEE-eCCHHHHHHHHHH-H------Hh--cCCcEEEEEccCCCHHHH
Confidence 3578888875 9999999999999999 99999 9998776654431 0 00 0123433333 34456
Q ss_pred HHHHHHhccccCCCCEEEEecC
Q 024016 85 KDVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~~~ 106 (274)
+.+++++...+.+-..+|++.+
T Consensus 72 ~~~~~~~~~~~~~id~vi~~ag 93 (250)
T PRK12939 72 QRFFDAAAAALGGLDGLVNNAG 93 (250)
T ss_pred HHHHHHHHHHcCCCCEEEECCC
Confidence 6666665443333346676644
No 434
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=95.21 E-value=0.076 Score=46.71 Aligned_cols=73 Identities=14% Similarity=0.249 Sum_probs=54.3
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccH
Q 024016 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVV 84 (274)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~ 84 (274)
+...+++.|||- ..+|.+++.-|.+.+. .|+++ .... .+..+.+++|||||.++. |..+
T Consensus 228 ~l~GK~vvVIGRS~iVGkPLa~LL~~~~A----TVTic-Hs~T--------------~nl~~~~r~ADIVIsAvGkp~~i 288 (364)
T PLN02616 228 EIKGKRAVVIGRSNIVGMPAALLLQREDA----TVSIV-HSRT--------------KNPEEITREADIIISAVGQPNMV 288 (364)
T ss_pred CCCCCEEEEECCCccccHHHHHHHHHCCC----eEEEe-CCCC--------------CCHHHHHhhCCEEEEcCCCcCcC
Confidence 345678999986 5679999999988887 88888 5331 245677899999999994 5543
Q ss_pred HHHHHHhccccCCCCEEEEe
Q 024016 85 KDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~ 104 (274)
.. ..+++|.+||++
T Consensus 289 ~~------d~vK~GAvVIDV 302 (364)
T PLN02616 289 RG------SWIKPGAVVIDV 302 (364)
T ss_pred CH------HHcCCCCEEEec
Confidence 21 236899999986
No 435
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=95.20 E-value=0.043 Score=50.07 Aligned_cols=63 Identities=17% Similarity=0.227 Sum_probs=45.5
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH-HHH----HHH-HcCceecc-CchhhccCCCEEEEee
Q 024016 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK-RRD----AFE-SIGVKVLS-DNNAVVEYSDVVVFSV 79 (274)
Q Consensus 12 ~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~-~~~----~l~-~~g~~~~~-~~~~~~~~aDiIil~v 79 (274)
||.|||.|..|.++|+.|.+.|+ +|+++ |.++. ... .+. ..|+.+.. ...+.+.++|+|+..-
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~----~V~~s-D~~~~~~~~~~~~~~~~~~gi~~~~g~~~~~~~~~d~vv~sp 70 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGA----EVTVT-DLKPNEELEPSMGQLRLNEGSVLHTGLHLEDLNNADLVVKSP 70 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCC----EEEEE-eCCCCccchhHHHHHhhccCcEEEecCchHHhccCCEEEECC
Confidence 58999999999999999999999 99999 86543 121 122 24776532 2244567899888864
No 436
>PLN02686 cinnamoyl-CoA reductase
Probab=95.17 E-value=0.055 Score=48.29 Aligned_cols=45 Identities=13% Similarity=0.214 Sum_probs=36.2
Q ss_pred CCCCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHH
Q 024016 5 PIPAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF 54 (274)
Q Consensus 5 ~~~~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l 54 (274)
+..++.++|.|.|. |-+|+++++.|++.|+ +|.+. .|+.++.+.+
T Consensus 48 ~~~~~~k~VLVTGatGfIG~~lv~~L~~~G~----~V~~~-~r~~~~~~~l 93 (367)
T PLN02686 48 GADAEARLVCVTGGVSFLGLAIVDRLLRHGY----SVRIA-VDTQEDKEKL 93 (367)
T ss_pred ccCCCCCEEEEECCchHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHH
Confidence 34556788999975 9999999999999999 99887 7776655444
No 437
>PRK06057 short chain dehydrogenase; Provisional
Probab=95.14 E-value=0.23 Score=41.59 Aligned_cols=43 Identities=12% Similarity=0.149 Sum_probs=36.4
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH
Q 024016 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE 55 (274)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~ 55 (274)
++.++|-|+|+ |.+|.++++.|.+.|+ +|++. +|++.+.+.+.
T Consensus 5 ~~~~~vlItGasggIG~~~a~~l~~~G~----~v~~~-~r~~~~~~~~~ 48 (255)
T PRK06057 5 LAGRVAVITGGGSGIGLATARRLAAEGA----TVVVG-DIDPEAGKAAA 48 (255)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCC----EEEEE-eCCHHHHHHHH
Confidence 45678999987 9999999999999999 99999 99887665544
No 438
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=95.13 E-value=0.2 Score=43.60 Aligned_cols=76 Identities=14% Similarity=0.238 Sum_probs=56.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCch----------hhcc-CCCEEEEee
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNN----------AVVE-YSDVVVFSV 79 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~----------~~~~-~aDiIil~v 79 (274)
.+++|+|+|.+|.+-..+....|- ..|+.. |.+++|.+...++|++-.-++. ++.. .+|..|-|+
T Consensus 187 ~tvaV~GlGgVGlaaI~gA~~agA---~~IiAv-D~~~~Kl~~A~~fGAT~~vn~~~~~~vv~~i~~~T~gG~d~~~e~~ 262 (366)
T COG1062 187 DTVAVFGLGGVGLAAIQGAKAAGA---GRIIAV-DINPEKLELAKKFGATHFVNPKEVDDVVEAIVELTDGGADYAFECV 262 (366)
T ss_pred CeEEEEeccHhHHHHHHHHHHcCC---ceEEEE-eCCHHHHHHHHhcCCceeecchhhhhHHHHHHHhcCCCCCEEEEcc
Confidence 579999999999999999999886 378888 9999999988889986432332 2233 578888887
Q ss_pred -CcccHHHHHHH
Q 024016 80 -KPQVVKDVAMQ 90 (274)
Q Consensus 80 -~~~~~~~v~~~ 90 (274)
..+.++..+.-
T Consensus 263 G~~~~~~~al~~ 274 (366)
T COG1062 263 GNVEVMRQALEA 274 (366)
T ss_pred CCHHHHHHHHHH
Confidence 35555555543
No 439
>PRK12828 short chain dehydrogenase; Provisional
Probab=95.13 E-value=0.27 Score=40.40 Aligned_cols=84 Identities=15% Similarity=0.215 Sum_probs=51.8
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee-CcccHHH
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV-KPQVVKD 86 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v-~~~~~~~ 86 (274)
+.++|.|.|. |.+|..+++.|++.|+ +|++. +|++++..+..+. .. ....+++..-+ ..+.+..
T Consensus 6 ~~k~vlItGatg~iG~~la~~l~~~G~----~v~~~-~r~~~~~~~~~~~-~~--------~~~~~~~~~D~~~~~~~~~ 71 (239)
T PRK12828 6 QGKVVAITGGFGGLGRATAAWLAARGA----RVALI-GRGAAPLSQTLPG-VP--------ADALRIGGIDLVDPQAARR 71 (239)
T ss_pred CCCEEEEECCCCcHhHHHHHHHHHCCC----eEEEE-eCChHhHHHHHHH-Hh--------hcCceEEEeecCCHHHHHH
Confidence 4568999975 9999999999999999 99999 9988665433220 00 01122222222 2445666
Q ss_pred HHHHhccccCCCCEEEEecC
Q 024016 87 VAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 87 v~~~i~~~l~~~~~vis~~~ 106 (274)
+++++.....+-..|++..+
T Consensus 72 ~~~~~~~~~~~~d~vi~~ag 91 (239)
T PRK12828 72 AVDEVNRQFGRLDALVNIAG 91 (239)
T ss_pred HHHHHHHHhCCcCEEEECCc
Confidence 66666544433346666543
No 440
>PRK07814 short chain dehydrogenase; Provisional
Probab=95.13 E-value=0.14 Score=43.10 Aligned_cols=85 Identities=18% Similarity=0.189 Sum_probs=53.6
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---Cccc
Q 024016 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQV 83 (274)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~~ 83 (274)
++.+++-|.|. |.+|.++++.|++.|+ +|.+. +|++++.+.+.+.- . + ...++.++.+ .++.
T Consensus 8 ~~~~~vlItGasggIG~~~a~~l~~~G~----~Vi~~-~r~~~~~~~~~~~l-~------~--~~~~~~~~~~D~~~~~~ 73 (263)
T PRK07814 8 LDDQVAVVTGAGRGLGAAIALAFAEAGA----DVLIA-ARTESQLDEVAEQI-R------A--AGRRAHVVAADLAHPEA 73 (263)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHHH-H------h--cCCcEEEEEccCCCHHH
Confidence 45678888865 6899999999999999 99999 99987766554310 0 0 0112222222 3455
Q ss_pred HHHHHHHhccccCCCCEEEEecC
Q 024016 84 VKDVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 84 ~~~v~~~i~~~l~~~~~vis~~~ 106 (274)
+..+++++...+.+=..+|+..+
T Consensus 74 ~~~~~~~~~~~~~~id~vi~~Ag 96 (263)
T PRK07814 74 TAGLAGQAVEAFGRLDIVVNNVG 96 (263)
T ss_pred HHHHHHHHHHHcCCCCEEEECCC
Confidence 66677666544433346777643
No 441
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=95.12 E-value=0.063 Score=41.45 Aligned_cols=43 Identities=7% Similarity=0.119 Sum_probs=30.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCC-CHHHHHHHHH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS-NLKRRDAFES 56 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r-~~~~~~~l~~ 56 (274)
+||+|+|+|+||..+++.+.+... .++...+++ +++....+.+
T Consensus 1 ikv~I~G~GriGr~v~~~~~~~~~---~~lvai~d~~~~~~~a~ll~ 44 (149)
T smart00846 1 IKVGINGFGRIGRLVLRALLERPD---IEVVAINDLTDPETLAHLLK 44 (149)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC---CEEEEeecCCCHHHHHHHhc
Confidence 489999999999999998875432 166554363 6666666655
No 442
>PRK08265 short chain dehydrogenase; Provisional
Probab=95.12 E-value=0.22 Score=41.91 Aligned_cols=79 Identities=13% Similarity=0.270 Sum_probs=51.8
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeccCchhhccCCCEEEEee---Cccc
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSV---KPQV 83 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDiIil~v---~~~~ 83 (274)
+.+++-|.|. |.+|.++++.|.+.|+ +|++. +|++++.+++.+ .+ ..+.++.. ..+.
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G~----~V~~~-~r~~~~~~~~~~~~~-------------~~~~~~~~Dl~~~~~ 66 (261)
T PRK08265 5 AGKVAIVTGGATLIGAAVARALVAAGA----RVAIV-DIDADNGAAVAASLG-------------ERARFIATDITDDAA 66 (261)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHHhC-------------CeeEEEEecCCCHHH
Confidence 4467878875 9999999999999999 99999 999877666543 11 12222222 3445
Q ss_pred HHHHHHHhccccCCCCEEEEec
Q 024016 84 VKDVAMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 84 ~~~v~~~i~~~l~~~~~vis~~ 105 (274)
+.+++.++...+.+=..+|+..
T Consensus 67 ~~~~~~~~~~~~g~id~lv~~a 88 (261)
T PRK08265 67 IERAVATVVARFGRVDILVNLA 88 (261)
T ss_pred HHHHHHHHHHHhCCCCEEEECC
Confidence 6666666654433334566653
No 443
>PRK07062 short chain dehydrogenase; Provisional
Probab=95.11 E-value=0.21 Score=42.08 Aligned_cols=87 Identities=11% Similarity=0.098 Sum_probs=54.0
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---Cccc
Q 024016 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQV 83 (274)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~~ 83 (274)
++.+++-|.|+ |.+|.++++.|.+.|+ +|++. +|++++.+.+.+. ..+...+.++.++.+ .++.
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G~----~V~~~-~r~~~~~~~~~~~-------~~~~~~~~~~~~~~~D~~~~~~ 73 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAGA----SVAIC-GRDEERLASAEAR-------LREKFPGARLLAARCDVLDEAD 73 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC----eEEEE-eCCHHHHHHHHHH-------HHhhCCCceEEEEEecCCCHHH
Confidence 44567777766 7899999999999999 99999 9998776654431 000011123333333 3445
Q ss_pred HHHHHHHhccccCCCCEEEEecC
Q 024016 84 VKDVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 84 ~~~v~~~i~~~l~~~~~vis~~~ 106 (274)
+.++++++...+.+=..+|+..+
T Consensus 74 v~~~~~~~~~~~g~id~li~~Ag 96 (265)
T PRK07062 74 VAAFAAAVEARFGGVDMLVNNAG 96 (265)
T ss_pred HHHHHHHHHHhcCCCCEEEECCC
Confidence 66777766544433346776543
No 444
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=95.09 E-value=0.066 Score=46.33 Aligned_cols=64 Identities=13% Similarity=0.159 Sum_probs=51.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCc
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP 81 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~ 81 (274)
..+|+|||.-.=-..+++.|.+.|+ +|.++ .-..+. ....|+.+.++..+++.++|+|++.+|+
T Consensus 2 ~~~~~v~ggd~r~~~~~~~l~~~G~----~v~~~-g~~~~~---~~~~g~~~~~~~~~~~~~ad~ii~~~p~ 65 (296)
T PRK08306 2 GKHIAVIGGDARQLELIRKLVELGA----KVSLV-GFDQLD---HGFTGATKSSSLEEALSDVDVIILPVPG 65 (296)
T ss_pred CcEEEEEcCcHHHHHHHHHHHHCCC----EEEEE-eccccc---cccCCceeeccHHHHhccCCEEEECCcc
Confidence 4689999999999999999999999 99887 443221 1235888887778889999999999875
No 445
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=95.09 E-value=0.061 Score=50.46 Aligned_cols=72 Identities=13% Similarity=0.141 Sum_probs=46.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHH---HHHH------cCc--ee-----ccCchhhccCCC
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD---AFES------IGV--KV-----LSDNNAVVEYSD 73 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~---~l~~------~g~--~~-----~~~~~~~~~~aD 73 (274)
..||+|||+|.+|++++..|...|. ..-....+ |+.+.... ++.+ .++ +. ..+..++++..|
T Consensus 129 ~akVlVlG~Gg~~s~lv~sL~~sG~-~~I~~vd~-D~v~SNlnRIgEl~e~A~~~n~~v~v~~i~~~~~~dl~ev~~~~D 206 (637)
T TIGR03693 129 NAKILAAGSGDFLTKLVRSLIDSGF-PRFHAIVT-DAEEHALDRIHELAEIAEETDDALLVQEIDFAEDQHLHEAFEPAD 206 (637)
T ss_pred cccEEEEecCchHHHHHHHHHhcCC-CcEEEEec-cccchhhhHHHHHHHHHHHhCCCCceEeccCCcchhHHHhhcCCc
Confidence 4689999999999999999999997 21122334 54433222 2222 122 11 233456788999
Q ss_pred EEEEeeCccc
Q 024016 74 VVVFSVKPQV 83 (274)
Q Consensus 74 iIil~v~~~~ 83 (274)
+|+..+.+..
T Consensus 207 iVi~vsDdy~ 216 (637)
T TIGR03693 207 WVLYVSDNGD 216 (637)
T ss_pred EEEEECCCCC
Confidence 9999986443
No 446
>PRK07775 short chain dehydrogenase; Provisional
Probab=95.06 E-value=0.15 Score=43.32 Aligned_cols=48 Identities=10% Similarity=0.163 Sum_probs=36.8
Q ss_pred CCCCCCCCCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHH
Q 024016 2 DAFPIPAESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF 54 (274)
Q Consensus 2 ~~~~~~~~~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l 54 (274)
.-+++..+.+++.|.| .|.+|.++++.|.+.|+ +|.+. .|++++.+.+
T Consensus 2 ~~~~~~~~~~~vlVtGa~g~iG~~la~~L~~~G~----~V~~~-~r~~~~~~~~ 50 (274)
T PRK07775 2 PRFEPHPDRRPALVAGASSGIGAATAIELAAAGF----PVALG-ARRVEKCEEL 50 (274)
T ss_pred CCCCCCCCCCEEEEECCCchHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHH
Confidence 3344444556788887 59999999999999998 89888 8887665543
No 447
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=95.06 E-value=0.019 Score=51.72 Aligned_cols=38 Identities=11% Similarity=0.291 Sum_probs=33.0
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHH
Q 024016 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKR 50 (274)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~ 50 (274)
.+.+||.|+|. |.+|+.+++.|++.|+ +|++. .|++++
T Consensus 58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G~----~V~~l-~R~~~~ 96 (390)
T PLN02657 58 PKDVTVLVVGATGYIGKFVVRELVRRGY----NVVAV-AREKSG 96 (390)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC----EEEEE-Eechhh
Confidence 34579999975 9999999999999999 99999 888754
No 448
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=95.06 E-value=0.14 Score=43.41 Aligned_cols=83 Identities=16% Similarity=0.191 Sum_probs=49.0
Q ss_pred CCCCeEEEEccc---HHHHHHHHHHHhCCCCCCCcEEEEeCCCHH---HHHHHHHcCceeccCchhhccCCCEEEEeeCc
Q 024016 8 AESFILGFIGAG---KMAESIAKGVAKSGVLPPDRICTAVHSNLK---RRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP 81 (274)
Q Consensus 8 ~~~~~IgiIG~G---~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~---~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~ 81 (274)
++.+++-|.|.+ .+|.++++.|.+.|+ +|++. +|+.. ..+.+.... ... ..-.+|+ ..+
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~la~~G~----~vil~-~r~~~~~~~~~~~~~~~----~~~--~~~~~Dl----~~~ 68 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAMHREGA----ELAFT-YQNDKLKGRVEEFAAQL----GSD--IVLPCDV----AED 68 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHHHHCCC----EEEEE-ecchhHHHHHHHHHhcc----CCc--eEeecCC----CCH
Confidence 455678888986 599999999999999 89888 78732 222222110 000 0011222 245
Q ss_pred ccHHHHHHHhccccCCCCEEEEec
Q 024016 82 QVVKDVAMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 82 ~~~~~v~~~i~~~l~~~~~vis~~ 105 (274)
+.++.++.++...+.+=.++|+..
T Consensus 69 ~~v~~~~~~~~~~~g~iD~linnA 92 (262)
T PRK07984 69 ASIDAMFAELGKVWPKFDGFVHSI 92 (262)
T ss_pred HHHHHHHHHHHhhcCCCCEEEECC
Confidence 567777777655443324667654
No 449
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.06 E-value=0.094 Score=44.89 Aligned_cols=73 Identities=15% Similarity=0.380 Sum_probs=53.7
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhC----CCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-
Q 024016 7 PAESFILGFIGA-GKMAESIAKGVAKS----GVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK- 80 (274)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~~a~~L~~~----g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~- 80 (274)
+...+++.|||- ..+|.+++.-|.+. +. .|+++ ++.. .+..+.+++||+||.++.
T Consensus 150 ~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~A----tVtvc-hs~T--------------~~l~~~~~~ADIvV~AvG~ 210 (287)
T PRK14181 150 PLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNA----TVTLL-HSQS--------------ENLTEILKTADIIIAAIGV 210 (287)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHhCcCCCCC----EEEEe-CCCC--------------CCHHHHHhhCCEEEEccCC
Confidence 345689999987 56799999999887 55 88888 5421 245677889999999995
Q ss_pred cccHHHHHHHhccccCCCCEEEEe
Q 024016 81 PQVVKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 81 ~~~~~~v~~~i~~~l~~~~~vis~ 104 (274)
|..+.. ..+++|.+||++
T Consensus 211 p~~i~~------~~ik~GavVIDv 228 (287)
T PRK14181 211 PLFIKE------EMIAEKAVIVDV 228 (287)
T ss_pred cCccCH------HHcCCCCEEEEe
Confidence 543321 236799999986
No 450
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=95.05 E-value=0.1 Score=43.67 Aligned_cols=84 Identities=17% Similarity=0.187 Sum_probs=53.0
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---CcccH
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVV 84 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~~~ 84 (274)
+.+++.|.|+ |.+|..+++.|++.|+ +|.+. +|++++.+.+.+. +. + ..+++.++-. .++.+
T Consensus 6 ~~~~vlItGasg~iG~~la~~l~~~G~----~v~~~-~r~~~~~~~~~~~-~~------~--~~~~~~~~~~Dl~~~~~~ 71 (262)
T PRK13394 6 NGKTAVVTGAASGIGKEIALELARAGA----AVAIA-DLNQDGANAVADE-IN------K--AGGKAIGVAMDVTNEDAV 71 (262)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC----eEEEE-eCChHHHHHHHHH-HH------h--cCceEEEEECCCCCHHHH
Confidence 4567888877 9999999999999999 99999 9998766554431 00 0 0122333222 34456
Q ss_pred HHHHHHhccccCCCCEEEEecC
Q 024016 85 KDVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~~~ 106 (274)
.+++.++.....+-..+|++.+
T Consensus 72 ~~~~~~~~~~~~~~d~vi~~ag 93 (262)
T PRK13394 72 NAGIDKVAERFGSVDILVSNAG 93 (262)
T ss_pred HHHHHHHHHHcCCCCEEEECCc
Confidence 6666665543333356776644
No 451
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=95.03 E-value=0.14 Score=42.95 Aligned_cols=81 Identities=9% Similarity=0.161 Sum_probs=50.1
Q ss_pred CCCCeEEEEccc---HHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEe---eCc
Q 024016 8 AESFILGFIGAG---KMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFS---VKP 81 (274)
Q Consensus 8 ~~~~~IgiIG~G---~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~---v~~ 81 (274)
++.+++-|.|.+ .+|.++++.|.+.|+ +|++. .|+.+..+.+.+.. . .++.++. ..+
T Consensus 5 l~~k~~lItGas~~~gIG~a~a~~la~~G~----~Vi~~-~r~~~~~~~~~~~~----~--------~~~~~~~~Dl~~~ 67 (252)
T PRK06079 5 LSGKKIVVMGVANKRSIAWGCAQAIKDQGA----TVIYT-YQNDRMKKSLQKLV----D--------EEDLLVECDVASD 67 (252)
T ss_pred cCCCEEEEeCCCCCCchHHHHHHHHHHCCC----EEEEe-cCchHHHHHHHhhc----c--------CceeEEeCCCCCH
Confidence 455677788885 799999999999999 99998 88743222222211 0 1122222 245
Q ss_pred ccHHHHHHHhccccCCCCEEEEec
Q 024016 82 QVVKDVAMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 82 ~~~~~v~~~i~~~l~~~~~vis~~ 105 (274)
+.++++++.+...+.+=.++|+..
T Consensus 68 ~~v~~~~~~~~~~~g~iD~lv~nA 91 (252)
T PRK06079 68 ESIERAFATIKERVGKIDGIVHAI 91 (252)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEcc
Confidence 667777777665443334666653
No 452
>PRK07454 short chain dehydrogenase; Provisional
Probab=95.03 E-value=0.13 Score=42.58 Aligned_cols=82 Identities=13% Similarity=0.173 Sum_probs=51.5
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---CcccHH
Q 024016 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVVK 85 (274)
Q Consensus 10 ~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~~~~ 85 (274)
++++.|.|. |.+|..+++.|++.|+ +|++. +|++++.+.+.+. + .+ ...++.++.. .++.+.
T Consensus 6 ~k~vlItG~sg~iG~~la~~l~~~G~----~V~~~-~r~~~~~~~~~~~-~------~~--~~~~~~~~~~D~~~~~~~~ 71 (241)
T PRK07454 6 MPRALITGASSGIGKATALAFAKAGW----DLALV-ARSQDALEALAAE-L------RS--TGVKAAAYSIDLSNPEAIA 71 (241)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHH-H------Hh--CCCcEEEEEccCCCHHHHH
Confidence 457888875 9999999999999998 99999 9998776554431 0 01 1123434433 344555
Q ss_pred HHHHHhccccCCCCEEEEec
Q 024016 86 DVAMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 86 ~v~~~i~~~l~~~~~vis~~ 105 (274)
.+++.+.....+=..+|+..
T Consensus 72 ~~~~~~~~~~~~id~lv~~a 91 (241)
T PRK07454 72 PGIAELLEQFGCPDVLINNA 91 (241)
T ss_pred HHHHHHHHHcCCCCEEEECC
Confidence 66666554333334666654
No 453
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=95.01 E-value=0.091 Score=45.99 Aligned_cols=73 Identities=15% Similarity=0.247 Sum_probs=54.0
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccH
Q 024016 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVV 84 (274)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~ 84 (274)
+.+.+++.|||- ..+|.+++.-|.+++. .|+++ .... .+..+.+++|||||.++. |..+
T Consensus 211 ~l~GK~vvVIGRS~iVGkPla~LL~~~~A----TVTic-Hs~T--------------~nl~~~~~~ADIvIsAvGkp~~v 271 (345)
T PLN02897 211 EIAGKNAVVIGRSNIVGLPMSLLLQRHDA----TVSTV-HAFT--------------KDPEQITRKADIVIAAAGIPNLV 271 (345)
T ss_pred CCCCCEEEEECCCccccHHHHHHHHHCCC----EEEEE-cCCC--------------CCHHHHHhhCCEEEEccCCcCcc
Confidence 345678999987 4679999998888887 88888 5321 245667899999999995 5543
Q ss_pred HHHHHHhccccCCCCEEEEe
Q 024016 85 KDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~ 104 (274)
.. ..+++|.+||++
T Consensus 272 ~~------d~vk~GavVIDV 285 (345)
T PLN02897 272 RG------SWLKPGAVVIDV 285 (345)
T ss_pred CH------HHcCCCCEEEEc
Confidence 21 236799999986
No 454
>PRK08017 oxidoreductase; Provisional
Probab=94.96 E-value=0.078 Score=44.32 Aligned_cols=43 Identities=16% Similarity=0.198 Sum_probs=36.4
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcC
Q 024016 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIG 58 (274)
Q Consensus 11 ~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g 58 (274)
++|.|.|+ |.+|.++++.|.+.|+ +|.+. +|++++.+.+.+.+
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~----~v~~~-~r~~~~~~~~~~~~ 46 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGY----RVLAA-CRKPDDVARMNSLG 46 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC----EEEEE-eCCHHHhHHHHhCC
Confidence 47999998 9999999999999998 99999 99988776654433
No 455
>PRK06914 short chain dehydrogenase; Provisional
Probab=94.96 E-value=0.1 Score=44.41 Aligned_cols=42 Identities=14% Similarity=0.143 Sum_probs=34.5
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH
Q 024016 9 ESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE 55 (274)
Q Consensus 9 ~~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~ 55 (274)
+.+++-|.| .|.+|.++++.|.+.|+ +|+++ +|+++..+.+.
T Consensus 2 ~~k~~lItGasg~iG~~la~~l~~~G~----~V~~~-~r~~~~~~~~~ 44 (280)
T PRK06914 2 NKKIAIVTGASSGFGLLTTLELAKKGY----LVIAT-MRNPEKQENLL 44 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCC----EEEEE-eCCHHHHHHHH
Confidence 345677776 59999999999999999 99999 89987766554
No 456
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=94.94 E-value=0.088 Score=46.58 Aligned_cols=68 Identities=13% Similarity=0.134 Sum_probs=46.8
Q ss_pred CCCCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-----cCceec-cC------chhhccCCC
Q 024016 7 PAESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----IGVKVL-SD------NNAVVEYSD 73 (274)
Q Consensus 7 ~~~~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-----~g~~~~-~~------~~~~~~~aD 73 (274)
..+.|||.|.| +|-+|+.+++.|++.|+ +|++. +|++++.+.+.. .++... .| ..+++++.|
T Consensus 7 ~~~~~~vLVtG~~GfIG~~l~~~L~~~G~----~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d 81 (353)
T PLN02896 7 ESATGTYCVTGATGYIGSWLVKLLLQRGY----TVHAT-LRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGCD 81 (353)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCC----EEEEE-eCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcCCC
Confidence 34567999998 59999999999999999 99988 888766544432 122211 11 233456788
Q ss_pred EEEEee
Q 024016 74 VVVFSV 79 (274)
Q Consensus 74 iIil~v 79 (274)
.||-+.
T Consensus 82 ~Vih~A 87 (353)
T PLN02896 82 GVFHVA 87 (353)
T ss_pred EEEECC
Confidence 877654
No 457
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=94.94 E-value=0.13 Score=40.11 Aligned_cols=67 Identities=18% Similarity=0.270 Sum_probs=48.3
Q ss_pred CCeEEEEcc--cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHH-------HHH----HHHcC--ceeccCchhhccCCCE
Q 024016 10 SFILGFIGA--GKMAESIAKGVAKSGVLPPDRICTAVHSNLKR-------RDA----FESIG--VKVLSDNNAVVEYSDV 74 (274)
Q Consensus 10 ~~~IgiIG~--G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~-------~~~----l~~~g--~~~~~~~~~~~~~aDi 74 (274)
..||++||= +++..+++..+.+-|. ++++. ....-. .+. +.+.| +++.++..++++++|+
T Consensus 2 gl~i~~vGD~~~rv~~Sl~~~~~~~g~----~~~~~-~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~e~l~~aDv 76 (158)
T PF00185_consen 2 GLKIAYVGDGHNRVAHSLIELLAKFGM----EVVLI-APEGLRYPPDPEVLEKAKKNAKKNGGKITITDDIEEALKGADV 76 (158)
T ss_dssp TEEEEEESSTTSHHHHHHHHHHHHTTS----EEEEE-SSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESSHHHHHTT-SE
T ss_pred CCEEEEECCCCChHHHHHHHHHHHcCC----EEEEE-CCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeCHHHhcCCCCE
Confidence 469999993 8999999999999998 88887 554411 111 11234 4677888899999999
Q ss_pred EEEeeCc
Q 024016 75 VVFSVKP 81 (274)
Q Consensus 75 Iil~v~~ 81 (274)
|+.-.-.
T Consensus 77 vy~~~~~ 83 (158)
T PF00185_consen 77 VYTDRWQ 83 (158)
T ss_dssp EEEESSS
T ss_pred EEEcCcc
Confidence 8887633
No 458
>PRK08267 short chain dehydrogenase; Provisional
Probab=94.91 E-value=0.28 Score=41.14 Aligned_cols=41 Identities=20% Similarity=0.105 Sum_probs=35.1
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH
Q 024016 11 FILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES 56 (274)
Q Consensus 11 ~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~ 56 (274)
+++-|+| .|.+|..+++.|++.|+ +|.+. +|++++.+.+.+
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~----~V~~~-~r~~~~~~~~~~ 43 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGW----RVGAY-DINEAGLAALAA 43 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC----eEEEE-eCCHHHHHHHHH
Confidence 4688886 59999999999999998 99999 999888776654
No 459
>PRK05993 short chain dehydrogenase; Provisional
Probab=94.89 E-value=0.093 Score=44.70 Aligned_cols=44 Identities=16% Similarity=0.217 Sum_probs=37.1
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcC
Q 024016 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIG 58 (274)
Q Consensus 10 ~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g 58 (274)
+++|.|.|+ |.+|.++++.|.+.|+ +|++. +|++++.+.+.+.+
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~G~----~Vi~~-~r~~~~~~~l~~~~ 48 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSDGW----RVFAT-CRKEEDVAALEAEG 48 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHCC
Confidence 357888887 9999999999999999 99999 99988877766543
No 460
>PRK06949 short chain dehydrogenase; Provisional
Probab=94.87 E-value=0.21 Score=41.74 Aligned_cols=43 Identities=19% Similarity=0.315 Sum_probs=36.4
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES 56 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~ 56 (274)
..++|-|.|. |.+|.++++.|.+.|+ +|++. +|++++.+.+.+
T Consensus 8 ~~k~ilItGasg~IG~~~a~~l~~~G~----~Vi~~-~r~~~~~~~~~~ 51 (258)
T PRK06949 8 EGKVALVTGASSGLGARFAQVLAQAGA----KVVLA-SRRVERLKELRA 51 (258)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHH
Confidence 3478888875 9999999999999998 99999 999887766543
No 461
>PRK06500 short chain dehydrogenase; Provisional
Probab=94.84 E-value=0.32 Score=40.31 Aligned_cols=41 Identities=12% Similarity=0.116 Sum_probs=34.5
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH
Q 024016 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE 55 (274)
Q Consensus 10 ~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~ 55 (274)
.++|.|.|+ |.+|.++++.|.+.|+ +|++. +|++++.+++.
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~----~v~~~-~r~~~~~~~~~ 47 (249)
T PRK06500 6 GKTALITGGTSGIGLETARQFLAEGA----RVAIT-GRDPASLEAAR 47 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC----EEEEe-cCCHHHHHHHH
Confidence 458888876 9999999999999998 99999 99877665544
No 462
>PRK07236 hypothetical protein; Provisional
Probab=94.84 E-value=0.046 Score=49.06 Aligned_cols=36 Identities=11% Similarity=-0.087 Sum_probs=32.4
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~ 48 (274)
|+.++|.|||+|.-|.+.|..|.+.|+ +|+++ +|.+
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~----~v~v~-E~~~ 39 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGW----DVDVF-ERSP 39 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCC----CEEEE-ecCC
Confidence 455799999999999999999999999 99999 8765
No 463
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.84 E-value=0.12 Score=44.33 Aligned_cols=77 Identities=12% Similarity=0.188 Sum_probs=54.1
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccH
Q 024016 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVV 84 (274)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~ 84 (274)
+...+++.|||- ..+|.+++.-|.+.|+.....|+++ .... .+..+.+++||+||.++. |..+
T Consensus 154 ~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvc-hs~T--------------~nl~~~~~~ADIvIsAvGkp~~i 218 (293)
T PRK14185 154 ETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVC-HSRS--------------KNLKKECLEADIIIAALGQPEFV 218 (293)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEe-cCCC--------------CCHHHHHhhCCEEEEccCCcCcc
Confidence 345689999987 5679999999988742111278888 4321 245677889999999994 5543
Q ss_pred HHHHHHhccccCCCCEEEEe
Q 024016 85 KDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~ 104 (274)
.. ..+++|.+||++
T Consensus 219 ~~------~~vk~gavVIDv 232 (293)
T PRK14185 219 KA------DMVKEGAVVIDV 232 (293)
T ss_pred CH------HHcCCCCEEEEe
Confidence 21 246799999986
No 464
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=94.83 E-value=0.038 Score=49.94 Aligned_cols=33 Identities=21% Similarity=0.280 Sum_probs=30.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~ 48 (274)
.+|.|||.|.+|.+.|..|.+.|+ +|+++ +|..
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~----~V~vl-e~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGY----QVTVF-DRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC----eEEEE-eCCC
Confidence 489999999999999999999998 99999 8864
No 465
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=94.82 E-value=0.078 Score=46.06 Aligned_cols=36 Identities=14% Similarity=0.206 Sum_probs=31.1
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHH
Q 024016 10 SFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKR 50 (274)
Q Consensus 10 ~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~ 50 (274)
.++|.|.| +|-+|+.+++.|++.|+ +|.+. .|+++.
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~~g~----~V~~~-~r~~~~ 40 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQRGY----TVKAT-VRDPND 40 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHHCCC----EEEEE-EcCCCc
Confidence 46899998 69999999999999999 99888 776543
No 466
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=94.82 E-value=0.051 Score=36.97 Aligned_cols=32 Identities=19% Similarity=0.254 Sum_probs=28.9
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024016 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (274)
Q Consensus 12 ~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~ 48 (274)
||.|||.|..|.-+|..|.+.|. +|+++ .|++
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~----~vtli-~~~~ 32 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGK----EVTLI-ERSD 32 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS----EEEEE-ESSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCc----EEEEE-eccc
Confidence 68999999999999999999998 99998 6654
No 467
>PRK09414 glutamate dehydrogenase; Provisional
Probab=94.81 E-value=0.15 Score=46.48 Aligned_cols=115 Identities=13% Similarity=0.105 Sum_probs=65.3
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeC----------CCHHHHHHHHH-c-----------CceeccC
Q 024016 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVH----------SNLKRRDAFES-I-----------GVKVLSD 64 (274)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~----------r~~~~~~~l~~-~-----------g~~~~~~ 64 (274)
..+.+||+|.|.|++|+..|+.|.+.|. .|+...| -+.+.+.+.++ . +++.. +
T Consensus 229 ~l~g~rVaIqGfGnVG~~~A~~L~~~Ga----kVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i-~ 303 (445)
T PRK09414 229 SFEGKRVVVSGSGNVAIYAIEKAQQLGA----KVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYL-E 303 (445)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeec-C
Confidence 3456899999999999999999999997 6664425 34443333322 1 22222 2
Q ss_pred chhhcc-CCCEEEEeeCcccH-HHHHHHhccccCCCCEEEEecCCCCHHHHHHhhCCCceEEEcCCc
Q 024016 65 NNAVVE-YSDVVVFSVKPQVV-KDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHSRFIRVMPNT 129 (274)
Q Consensus 65 ~~~~~~-~aDiIil~v~~~~~-~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~~~~~~~~~p~~ 129 (274)
+.++.. +|||++-|...+.+ .+-...+.+ +.-++|+--.++-....-.+.+.. +-+-+.|..
T Consensus 304 ~~~i~~~d~DVliPaAl~n~It~~~a~~i~~--~~akiIvEgAN~p~t~~A~~~L~~-rGI~~vPD~ 367 (445)
T PRK09414 304 GGSPWSVPCDIALPCATQNELDEEDAKTLIA--NGVKAVAEGANMPSTPEAIEVFLE-AGVLFAPGK 367 (445)
T ss_pred CccccccCCcEEEecCCcCcCCHHHHHHHHH--cCCeEEEcCCCCCCCHHHHHHHHH-CCcEEECch
Confidence 333333 79999999875554 344445532 122466655554333333333432 334455654
No 468
>PRK08163 salicylate hydroxylase; Provisional
Probab=94.81 E-value=0.041 Score=49.43 Aligned_cols=36 Identities=14% Similarity=0.200 Sum_probs=32.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK 49 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~ 49 (274)
+.++|.|||.|..|.++|..|.+.|+ +|+++ +|.++
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g~----~v~v~-Er~~~ 38 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQGI----KVKLL-EQAAE 38 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCC----cEEEE-eeCcc
Confidence 34689999999999999999999999 99999 87654
No 469
>PRK07060 short chain dehydrogenase; Provisional
Probab=94.80 E-value=0.099 Score=43.33 Aligned_cols=44 Identities=20% Similarity=0.236 Sum_probs=37.5
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH
Q 024016 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES 56 (274)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~ 56 (274)
++.+++.|.|. |.+|..+++.|.+.|+ +|++. +|++++.+.+.+
T Consensus 7 ~~~~~~lItGa~g~iG~~~a~~l~~~g~----~V~~~-~r~~~~~~~~~~ 51 (245)
T PRK07060 7 FSGKSVLVTGASSGIGRACAVALAQRGA----RVVAA-ARNAAALDRLAG 51 (245)
T ss_pred cCCCEEEEeCCcchHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHH
Confidence 44578999987 8999999999999999 99999 999887766654
No 470
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=94.80 E-value=0.3 Score=41.04 Aligned_cols=43 Identities=12% Similarity=0.238 Sum_probs=35.6
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES 56 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~ 56 (274)
+.+++-|.|. |.+|.++++.|.+.|+ +|++. +|+.++.+++.+
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G~----~V~~~-~r~~~~~~~l~~ 47 (262)
T TIGR03325 4 KGEVVLVTGGASGLGRAIVDRFVAEGA----RVAVL-DKSAAGLQELEA 47 (262)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHh
Confidence 4567777765 7899999999999999 99999 999887776653
No 471
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=94.77 E-value=0.082 Score=46.23 Aligned_cols=68 Identities=16% Similarity=0.149 Sum_probs=55.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCccc
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQV 83 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~ 83 (274)
.+++.|.|.|-.|..+|.++...|. +|.|+ ..+|-++-+..=.|.++. ...+++..+|++|.|+-...
T Consensus 209 GK~vVV~GYG~vGrG~A~~~rg~GA----~ViVt-EvDPI~AleA~MdGf~V~-~m~~Aa~~gDifiT~TGnkd 276 (420)
T COG0499 209 GKNVVVAGYGWVGRGIAMRLRGMGA----RVIVT-EVDPIRALEAAMDGFRVM-TMEEAAKTGDIFVTATGNKD 276 (420)
T ss_pred CceEEEecccccchHHHHHhhcCCC----eEEEE-ecCchHHHHHhhcCcEEE-EhHHhhhcCCEEEEccCCcC
Confidence 4678888999999999999999998 99999 888866544433688775 45778889999999996443
No 472
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.76 E-value=0.11 Score=47.67 Aligned_cols=64 Identities=16% Similarity=0.108 Sum_probs=45.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhC--CCCCCCcEEEEeCCCHH--HHHHHHHcCceec-c-CchhhccCCCEEEEee
Q 024016 10 SFILGFIGAGKMAESIAKGVAKS--GVLPPDRICTAVHSNLK--RRDAFESIGVKVL-S-DNNAVVEYSDVVVFSV 79 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~--g~~~~~~v~v~~~r~~~--~~~~l~~~g~~~~-~-~~~~~~~~aDiIil~v 79 (274)
.++|.|||.|..|.+-++.|++. |+ +|+++ |.++. ..+.|.+ |+.+. . ...+.+.++|+|+..-
T Consensus 7 ~~~v~viG~G~sG~s~~~~l~~~~~~~----~v~~~-D~~~~~~~~~~l~~-g~~~~~g~~~~~~~~~~d~vV~Sp 76 (438)
T PRK04663 7 IKNVVVVGLGITGLSVVKHLRKYQPQL----TVKVI-DTRETPPGQEQLPE-DVELHSGGWNLEWLLEADLVVTNP 76 (438)
T ss_pred CceEEEEeccHHHHHHHHHHHhcCCCC----eEEEE-eCCCCchhHHHhhc-CCEEEeCCCChHHhccCCEEEECC
Confidence 36899999999999999999988 56 89999 86542 2234543 77653 2 1334467899888764
No 473
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=94.75 E-value=0.24 Score=41.47 Aligned_cols=25 Identities=20% Similarity=0.393 Sum_probs=22.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCC
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSG 33 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g 33 (274)
+..||.|||+|..|+.++.+|...|
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G 34 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLH 34 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHcc
Confidence 4579999999999999999999875
No 474
>PLN00198 anthocyanidin reductase; Provisional
Probab=94.74 E-value=0.071 Score=46.83 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=31.6
Q ss_pred CCCCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH
Q 024016 7 PAESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLK 49 (274)
Q Consensus 7 ~~~~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~ 49 (274)
|+++++|.|.| +|-+|+.+++.|++.|+ +|.+. .|+.+
T Consensus 6 ~~~~~~vlItG~~GfIG~~l~~~L~~~g~----~V~~~-~r~~~ 44 (338)
T PLN00198 6 PTGKKTACVIGGTGFLASLLIKLLLQKGY----AVNTT-VRDPE 44 (338)
T ss_pred CCCCCeEEEECCchHHHHHHHHHHHHCCC----EEEEE-ECCCC
Confidence 34568999997 79999999999999999 88777 66654
No 475
>PRK05717 oxidoreductase; Validated
Probab=94.74 E-value=0.47 Score=39.66 Aligned_cols=46 Identities=20% Similarity=0.226 Sum_probs=35.4
Q ss_pred CCCCC-CCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH
Q 024016 5 PIPAE-SFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE 55 (274)
Q Consensus 5 ~~~~~-~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~ 55 (274)
|++.. .++|-|.| .|.+|..+++.|.+.|+ +|.+. +|++++.+.+.
T Consensus 4 ~~~~~~~k~vlItG~sg~IG~~~a~~l~~~g~----~v~~~-~~~~~~~~~~~ 51 (255)
T PRK05717 4 PNPGHNGRVALVTGAARGIGLGIAAWLIAEGW----QVVLA-DLDRERGSKVA 51 (255)
T ss_pred CCcccCCCEEEEeCCcchHHHHHHHHHHHcCC----EEEEE-cCCHHHHHHHH
Confidence 44443 35677776 59999999999999998 99998 88877665543
No 476
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=94.73 E-value=0.081 Score=46.01 Aligned_cols=77 Identities=18% Similarity=0.224 Sum_probs=50.2
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-------------------HHHH----HHHH--cCcee--c--
Q 024016 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-------------------KRRD----AFES--IGVKV--L-- 62 (274)
Q Consensus 12 ~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~-------------------~~~~----~l~~--~g~~~--~-- 62 (274)
||.|||+|.+|+.++++|...|. .+++++ |.+. .|++ .+.+ ..+.+ .
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gv---g~ItIv-D~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~ 76 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGF---GEIHII-DLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHA 76 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcC---CeEEEE-cCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEec
Confidence 68999999999999999999997 367777 5422 1122 2222 12222 1
Q ss_pred --cC---chhhccCCCEEEEeeCcccHHHHHHHhc
Q 024016 63 --SD---NNAVVEYSDVVVFSVKPQVVKDVAMQIR 92 (274)
Q Consensus 63 --~~---~~~~~~~aDiIil~v~~~~~~~v~~~i~ 92 (274)
.+ ..+..++.|+|+.|+.....+..+.++.
T Consensus 77 ~i~~~~~~~~f~~~~DvVv~a~Dn~~ar~~in~~c 111 (312)
T cd01489 77 NIKDPDFNVEFFKQFDLVFNALDNLAARRHVNKMC 111 (312)
T ss_pred cCCCccchHHHHhcCCEEEECCCCHHHHHHHHHHH
Confidence 11 2356778999999997666666565544
No 477
>PRK05867 short chain dehydrogenase; Provisional
Probab=94.73 E-value=0.17 Score=42.35 Aligned_cols=83 Identities=17% Similarity=0.169 Sum_probs=52.7
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---CcccH
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVV 84 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~~~ 84 (274)
+.+++-|.|. |.+|.++++.|.+.|+ +|.+. +|++++.+.+.+. +. + ...++.++.. .++.+
T Consensus 8 ~~k~vlVtGas~gIG~~ia~~l~~~G~----~V~~~-~r~~~~~~~~~~~-l~------~--~~~~~~~~~~D~~~~~~~ 73 (253)
T PRK05867 8 HGKRALITGASTGIGKRVALAYVEAGA----QVAIA-ARHLDALEKLADE-IG------T--SGGKVVPVCCDVSQHQQV 73 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC----EEEEE-cCCHHHHHHHHHH-HH------h--cCCeEEEEEccCCCHHHH
Confidence 4567878876 8999999999999999 99999 9998877665431 00 0 0112222222 34556
Q ss_pred HHHHHHhccccCCCCEEEEec
Q 024016 85 KDVAMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~~ 105 (274)
.++++++...+.+=..+|+..
T Consensus 74 ~~~~~~~~~~~g~id~lv~~a 94 (253)
T PRK05867 74 TSMLDQVTAELGGIDIAVCNA 94 (253)
T ss_pred HHHHHHHHHHhCCCCEEEECC
Confidence 677766654443334666654
No 478
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.73 E-value=0.072 Score=48.18 Aligned_cols=63 Identities=17% Similarity=0.198 Sum_probs=44.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhc--cCCCEEEEe--eCcc
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVV--EYSDVVVFS--VKPQ 82 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~--~~aDiIil~--v~~~ 82 (274)
|+|.|+|+|.-|.+.++.|. .|+ +|+++ |..+... .+.+.|+... . .+.. +++|+|+.. +|++
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~G~----~V~~~-D~~~~~~-~~~~~gi~~~-~-~~~~~~~~~d~vv~sp~i~~~ 67 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-KFG----GVDIF-DDKFTES-HKDEEGNLLL-P-SNDFDPNKSDLEIPSPGIPPS 67 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-CCC----eEEEE-cCCCCcc-chhhcCCEEe-c-HHHcCcCCCCEEEECCCCCCC
Confidence 58999999999999999999 998 99999 8654322 1233466553 2 2223 468988776 3544
No 479
>PRK05854 short chain dehydrogenase; Provisional
Probab=94.70 E-value=0.27 Score=42.80 Aligned_cols=84 Identities=14% Similarity=0.152 Sum_probs=51.6
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC---cccH
Q 024016 9 ESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK---PQVV 84 (274)
Q Consensus 9 ~~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~---~~~~ 84 (274)
+.+++-|.| .|.+|..+++.|.+.|+ +|++. .|+.++.+++.+. + .+......+.++.+. .+.+
T Consensus 13 ~gk~~lITGas~GIG~~~a~~La~~G~----~Vil~-~R~~~~~~~~~~~-l------~~~~~~~~v~~~~~Dl~d~~sv 80 (313)
T PRK05854 13 SGKRAVVTGASDGLGLGLARRLAAAGA----EVILP-VRNRAKGEAAVAA-I------RTAVPDAKLSLRALDLSSLASV 80 (313)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHH-H------HHhCCCCceEEEEecCCCHHHH
Confidence 345666665 58899999999999998 99999 9998877655431 0 000112234444443 4456
Q ss_pred HHHHHHhccccCCCCEEEEe
Q 024016 85 KDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~ 104 (274)
+.+++++.....+=.++|+.
T Consensus 81 ~~~~~~~~~~~~~iD~li~n 100 (313)
T PRK05854 81 AALGEQLRAEGRPIHLLINN 100 (313)
T ss_pred HHHHHHHHHhCCCccEEEEC
Confidence 66666665433332456654
No 480
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=94.70 E-value=0.19 Score=43.31 Aligned_cols=75 Identities=16% Similarity=0.242 Sum_probs=48.0
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-------------------HHHHH----HHH--cCcee-----
Q 024016 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-------------------KRRDA----FES--IGVKV----- 61 (274)
Q Consensus 12 ~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~-------------------~~~~~----l~~--~g~~~----- 61 (274)
||.+||+|.+|+.++++|...|. .++++. |.+. .|++. +.+ .++++
T Consensus 1 kVlVVGaGGlG~eilknLal~Gv---g~I~Iv-D~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~ 76 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGF---RNIHVI-DMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFG 76 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC---CeEEEE-CCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEec
Confidence 68999999999999999999997 256665 4321 12222 222 22322
Q ss_pred --ccCchhhccCCCEEEEeeCcccHHHHHHH
Q 024016 62 --LSDNNAVVEYSDVVVFSVKPQVVKDVAMQ 90 (274)
Q Consensus 62 --~~~~~~~~~~aDiIil~v~~~~~~~v~~~ 90 (274)
.+...+..++.|+||.|+..-..+..+.+
T Consensus 77 ~i~~~~~~f~~~fdvVi~alDn~~aR~~in~ 107 (291)
T cd01488 77 KIQDKDEEFYRQFNIIICGLDSIEARRWING 107 (291)
T ss_pred ccCchhHHHhcCCCEEEECCCCHHHHHHHHH
Confidence 12234567789999999976555544443
No 481
>PRK07890 short chain dehydrogenase; Provisional
Probab=94.70 E-value=0.19 Score=41.96 Aligned_cols=83 Identities=13% Similarity=0.134 Sum_probs=51.8
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---CcccH
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVV 84 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~~~ 84 (274)
+.++|-|.|. |.+|.++++.|.+.|+ +|++. +|++++.+.+.+.- .. ...++.++.. .++.+
T Consensus 4 ~~k~vlItGa~~~IG~~la~~l~~~G~----~V~~~-~r~~~~~~~~~~~~-------~~--~~~~~~~~~~D~~~~~~~ 69 (258)
T PRK07890 4 KGKVVVVSGVGPGLGRTLAVRAARAGA----DVVLA-ARTAERLDEVAAEI-------DD--LGRRALAVPTDITDEDQC 69 (258)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCC----EEEEE-eCCHHHHHHHHHHH-------HH--hCCceEEEecCCCCHHHH
Confidence 4567888865 9999999999999999 99999 99987665554310 00 0122233332 34456
Q ss_pred HHHHHHhccccCCCCEEEEec
Q 024016 85 KDVAMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~~ 105 (274)
..+++++...+.+=..+|+..
T Consensus 70 ~~~~~~~~~~~g~~d~vi~~a 90 (258)
T PRK07890 70 ANLVALALERFGRVDALVNNA 90 (258)
T ss_pred HHHHHHHHHHcCCccEEEECC
Confidence 666666544433324666654
No 482
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=94.70 E-value=0.11 Score=52.05 Aligned_cols=66 Identities=9% Similarity=0.014 Sum_probs=48.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH---------------------HHHHHHHcCceecc----
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK---------------------RRDAFESIGVKVLS---- 63 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~---------------------~~~~l~~~g~~~~~---- 63 (274)
+.+||+|||+|.-|.+-|..|.+.|| +|++| ++.+. ..+.+.+.|+++..
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~----~VtVf-E~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~v 379 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGF----PVTVF-EAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVV 379 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC----eEEEE-eeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEe
Confidence 46899999999999999999999999 99999 76531 12334446665321
Q ss_pred ----Cchhhcc-CCCEEEEee
Q 024016 64 ----DNNAVVE-YSDVVVFSV 79 (274)
Q Consensus 64 ----~~~~~~~-~aDiIil~v 79 (274)
+..++.+ ..|-||+++
T Consensus 380 G~dit~~~l~~~~yDAV~LAt 400 (944)
T PRK12779 380 GKTATLEDLKAAGFWKIFVGT 400 (944)
T ss_pred ccEEeHHHhccccCCEEEEeC
Confidence 2334433 689999998
No 483
>PRK07831 short chain dehydrogenase; Provisional
Probab=94.69 E-value=0.24 Score=41.65 Aligned_cols=42 Identities=14% Similarity=0.230 Sum_probs=34.6
Q ss_pred CCCeEEEEcc-c-HHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH
Q 024016 9 ESFILGFIGA-G-KMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE 55 (274)
Q Consensus 9 ~~~~IgiIG~-G-~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~ 55 (274)
+.+++-|.|. | .+|.++++.|.+.|+ +|++. +|++++.+...
T Consensus 16 ~~k~vlItG~sg~gIG~~ia~~l~~~G~----~V~~~-~~~~~~~~~~~ 59 (262)
T PRK07831 16 AGKVVLVTAAAGTGIGSATARRALEEGA----RVVIS-DIHERRLGETA 59 (262)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHcCC----EEEEE-eCCHHHHHHHH
Confidence 3578889997 6 699999999999999 89998 89887665443
No 484
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=94.69 E-value=0.37 Score=42.43 Aligned_cols=44 Identities=11% Similarity=0.145 Sum_probs=30.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCC--CHHHHHHHHH
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS--NLKRRDAFES 56 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r--~~~~~~~l~~ 56 (274)
++||||+|+|+||...++.+.+... .++..++|+ +++....|.+
T Consensus 5 ~lrVaI~G~GrIGr~~~r~~~~~~~---velvaI~D~~~~~~~~a~ll~ 50 (338)
T PLN02358 5 KIRIGINGFGRIGRLVARVVLQRDD---VELVAVNDPFITTEYMTYMFK 50 (338)
T ss_pred ceEEEEEeecHHHHHHHHHHhhCCC---cEEEEEeCCCCCHHHHHHhhe
Confidence 4799999999999999999876432 266665464 4455555544
No 485
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=94.68 E-value=0.26 Score=42.76 Aligned_cols=44 Identities=7% Similarity=0.099 Sum_probs=33.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeC-CCHHHHHHHHH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVH-SNLKRRDAFES 56 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~-r~~~~~~~l~~ 56 (274)
.||||=|.|++|+..++.+.+.+. .-+|...++ .+++....|.+
T Consensus 2 ikV~INGfGrIGR~v~ra~~~~~~--dieVVaInd~t~~~~~A~Llk 46 (335)
T COG0057 2 IKVAINGFGRIGRLVARAALERDG--DIEVVAINDLTDPDYLAHLLK 46 (335)
T ss_pred cEEEEecCcHHHHHHHHHHHhCCC--CeEEEEEecCCCHHHHHHHHh
Confidence 599999999999999999998761 017777745 56666666654
No 486
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=94.67 E-value=0.094 Score=43.55 Aligned_cols=41 Identities=20% Similarity=0.151 Sum_probs=34.4
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHH
Q 024016 9 ESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF 54 (274)
Q Consensus 9 ~~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l 54 (274)
+.++|.|.| .|.+|.++++.|.+.|+ +|++. +|++++.+.+
T Consensus 5 ~~~~ilItGasg~iG~~l~~~l~~~g~----~V~~~-~r~~~~~~~~ 46 (251)
T PRK12826 5 EGRVALVTGAARGIGRAIAVRLAADGA----EVIVV-DICGDDAAAT 46 (251)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHH
Confidence 456899997 69999999999999999 99999 9987665443
No 487
>PRK08703 short chain dehydrogenase; Provisional
Probab=94.66 E-value=0.099 Score=43.31 Aligned_cols=44 Identities=18% Similarity=0.215 Sum_probs=36.5
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH
Q 024016 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE 55 (274)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~ 55 (274)
+|+.+++.|.|+ |.+|..+++.|.+.|+ +|++. +|++++.+.+.
T Consensus 3 ~l~~k~vlItG~sggiG~~la~~l~~~g~----~V~~~-~r~~~~~~~~~ 47 (239)
T PRK08703 3 TLSDKTILVTGASQGLGEQVAKAYAAAGA----TVILV-ARHQKKLEKVY 47 (239)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHcCC----EEEEE-eCChHHHHHHH
Confidence 455578888875 9999999999999999 99999 99987765543
No 488
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.65 E-value=0.14 Score=47.28 Aligned_cols=66 Identities=15% Similarity=0.031 Sum_probs=46.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH----HHHHHHHcCceec-cCchhhccCCCEEEEee
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK----RRDAFESIGVKVL-SDNNAVVEYSDVVVFSV 79 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~----~~~~l~~~g~~~~-~~~~~~~~~aDiIil~v 79 (274)
+.+||+|+|+|.=|.+.++.|.+.|. +|+++ |.++. ..++|.+.+.... ....+.+.++|+||..-
T Consensus 7 ~~~~v~v~G~G~sG~~~~~~l~~~g~----~v~~~-d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~vV~Sp 77 (468)
T PRK04690 7 EGRRVALWGWGREGRAAYRALRAHLP----AQALT-LFCNAVEAREVGALADAALLVETEASAQRLAAFDVVVKSP 77 (468)
T ss_pred CCCEEEEEccchhhHHHHHHHHHcCC----EEEEE-cCCCcccchHHHHHhhcCEEEeCCCChHHccCCCEEEECC
Confidence 35689999999999999999999998 99999 84321 2224544332221 22335567899998864
No 489
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.65 E-value=0.14 Score=44.06 Aligned_cols=72 Identities=19% Similarity=0.312 Sum_probs=52.9
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhC----CCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee-Cc
Q 024016 8 AESFILGFIGA-GKMAESIAKGVAKS----GVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV-KP 81 (274)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~~a~~L~~~----g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v-~~ 81 (274)
...++|.|||- ..+|.+++.-|.+. +. .|+++ .... .+..+.+++|||||.++ +|
T Consensus 155 l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~a----TVtvc-hs~T--------------~~l~~~~~~ADIvIsAvGkp 215 (297)
T PRK14167 155 TEGADVVVVGRSDIVGKPMANLLIQKADGGNA----TVTVC-HSRT--------------DDLAAKTRRADIVVAAAGVP 215 (297)
T ss_pred CCCCEEEEECCCcccHHHHHHHHhcCccCCCC----EEEEe-CCCC--------------CCHHHHHhhCCEEEEccCCc
Confidence 45679999987 56799999988876 44 78888 5331 24567789999999999 56
Q ss_pred ccHHHHHHHhccccCCCCEEEEe
Q 024016 82 QVVKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 82 ~~~~~v~~~i~~~l~~~~~vis~ 104 (274)
..+.. ..+++|.+||++
T Consensus 216 ~~i~~------~~ik~gaiVIDv 232 (297)
T PRK14167 216 ELIDG------SMLSEGATVIDV 232 (297)
T ss_pred CccCH------HHcCCCCEEEEc
Confidence 64322 236799999986
No 490
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=94.65 E-value=0.032 Score=46.76 Aligned_cols=89 Identities=20% Similarity=0.188 Sum_probs=54.8
Q ss_pred CCCCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHH-----HHHHHH-cCce-eccCchhhccCCCEEE
Q 024016 5 PIPAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKR-----RDAFES-IGVK-VLSDNNAVVEYSDVVV 76 (274)
Q Consensus 5 ~~~~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~-----~~~l~~-~g~~-~~~~~~~~~~~aDiIi 76 (274)
+...++-+++|+|+ |.+|+.+++-|..++- .+.+. .|+.++ ...+.+ .|.. +.+...+.....++|+
T Consensus 162 GidlsqatvaivGa~G~Ia~~Iar~la~~~~----~~~ll-~r~aea~~rq~l~~l~e~~~~~~i~s~d~~~~~e~i~v~ 236 (351)
T COG5322 162 GIDLSQATVAIVGATGDIASAIARWLAPKVG----VKELL-LRDAEARNRQRLTLLQEELGRGKIMSLDYALPQEDILVW 236 (351)
T ss_pred CcCHHHCeEEEecCCchHHHHHHHHhccccC----EEEEe-cccHHhhhhhhhhhcccccCCCeeeeccccccccceEEE
Confidence 34445678999997 9999999998876654 55555 665544 333333 3332 2223344556667788
Q ss_pred EeeCcccHHHHHHHhc-cccCCCCEEEE
Q 024016 77 FSVKPQVVKDVAMQIR-PLLSRKKLLVS 103 (274)
Q Consensus 77 l~v~~~~~~~v~~~i~-~~l~~~~~vis 103 (274)
++..|.-. .|. .+++|+.+|++
T Consensus 237 vAs~~~g~-----~I~pq~lkpg~~ivD 259 (351)
T COG5322 237 VASMPKGV-----EIFPQHLKPGCLIVD 259 (351)
T ss_pred EeecCCCc-----eechhhccCCeEEEc
Confidence 88744322 122 24789988886
No 491
>PRK07109 short chain dehydrogenase; Provisional
Probab=94.63 E-value=0.22 Score=43.81 Aligned_cols=84 Identities=14% Similarity=0.179 Sum_probs=54.6
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---Cccc
Q 024016 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQV 83 (274)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~~ 83 (274)
++.++|.|.|+ |.+|..+++.|.+.|+ +|++. +|++++.+.+.+. + .+ ..+++.++.+ .++.
T Consensus 6 l~~k~vlITGas~gIG~~la~~la~~G~----~Vvl~-~R~~~~l~~~~~~-l------~~--~g~~~~~v~~Dv~d~~~ 71 (334)
T PRK07109 6 IGRQVVVITGASAGVGRATARAFARRGA----KVVLL-ARGEEGLEALAAE-I------RA--AGGEALAVVADVADAEA 71 (334)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHH-H------HH--cCCcEEEEEecCCCHHH
Confidence 44567888875 9999999999999999 99999 9998876655431 0 00 1233444433 3455
Q ss_pred HHHHHHHhccccCCCCEEEEec
Q 024016 84 VKDVAMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 84 ~~~v~~~i~~~l~~~~~vis~~ 105 (274)
++.+++++...+.+=.++|+..
T Consensus 72 v~~~~~~~~~~~g~iD~lInnA 93 (334)
T PRK07109 72 VQAAADRAEEELGPIDTWVNNA 93 (334)
T ss_pred HHHHHHHHHHHCCCCCEEEECC
Confidence 6677766655444435677654
No 492
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=94.62 E-value=0.25 Score=42.06 Aligned_cols=99 Identities=15% Similarity=0.186 Sum_probs=63.4
Q ss_pred eEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEE-eCCCHH--HHHHHHHcCcee------ccCchhhccC-CC-EEEEee
Q 024016 12 ILGFIGA-GKMAESIAKGVAKSGVLPPDRICTA-VHSNLK--RRDAFESIGVKV------LSDNNAVVEY-SD-VVVFSV 79 (274)
Q Consensus 12 ~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~-~~r~~~--~~~~l~~~g~~~------~~~~~~~~~~-aD-iIil~v 79 (274)
||.|.|+ |+||+..++.+.+.++ ++... .++... ....+...++.+ .++..++.+. +| ++|=-+
T Consensus 2 ~V~V~Ga~GkMG~~v~~av~~~~~----~Lv~~~~~~~~~~~~~~~~~g~~v~v~~~~~~~~~l~~~~~~~~d~VvIDFT 77 (275)
T TIGR02130 2 QIMVNGCPGKMGKAVAEAADAAGL----EIVPTSFGGEEEAENEAEVAGKEILLHGPSEREARIGEVFAKYPELICIDYT 77 (275)
T ss_pred eEEEeCCCChHHHHHHHHHhcCCC----EEEeeEccccccccchhhhcccceeeeccccccccHHHHHhhcCCEEEEECC
Confidence 7889987 9999999999988777 66553 244321 222222235555 5566666665 89 777777
Q ss_pred CcccHHHHHHHhccccCCCCEEEEecCCCCHHHHHHhh
Q 024016 80 KPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWT 117 (274)
Q Consensus 80 ~~~~~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~ 117 (274)
.|+.+.+.+..... .+..+|.-+.|.+.+.+++..
T Consensus 78 ~P~~~~~n~~~~~~---~gv~~ViGTTG~~~~~~~~l~ 112 (275)
T TIGR02130 78 HPSAVNDNAAFYGK---HGIPFVMGTTGGDREALAKLV 112 (275)
T ss_pred ChHHHHHHHHHHHH---CCCCEEEcCCCCCHHHHHHHH
Confidence 78877776655432 334455555777777776553
No 493
>PRK06197 short chain dehydrogenase; Provisional
Probab=94.60 E-value=0.3 Score=42.18 Aligned_cols=40 Identities=23% Similarity=0.240 Sum_probs=32.9
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHH
Q 024016 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF 54 (274)
Q Consensus 10 ~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l 54 (274)
.++|-|.|+ |.+|..+++.|.+.|+ +|++. .|++++.+..
T Consensus 16 ~k~vlItGas~gIG~~~a~~l~~~G~----~vi~~-~r~~~~~~~~ 56 (306)
T PRK06197 16 GRVAVVTGANTGLGYETAAALAAKGA----HVVLA-VRNLDKGKAA 56 (306)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHH
Confidence 356777764 9999999999999998 99888 8988776543
No 494
>PRK06194 hypothetical protein; Provisional
Probab=94.59 E-value=0.3 Score=41.63 Aligned_cols=84 Identities=17% Similarity=0.099 Sum_probs=52.1
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---CcccH
Q 024016 9 ESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVV 84 (274)
Q Consensus 9 ~~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~~~ 84 (274)
+.++|-|.| +|.+|..+++.|.+.|+ +|++. +|+.+..+...+. ... ...++.++.. .++.+
T Consensus 5 ~~k~vlVtGasggIG~~la~~l~~~G~----~V~~~-~r~~~~~~~~~~~-------~~~--~~~~~~~~~~D~~d~~~~ 70 (287)
T PRK06194 5 AGKVAVITGAASGFGLAFARIGAALGM----KLVLA-DVQQDALDRAVAE-------LRA--QGAEVLGVRTDVSDAAQV 70 (287)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHCCC----EEEEE-eCChHHHHHHHHH-------HHh--cCCeEEEEECCCCCHHHH
Confidence 446788886 58999999999999999 99999 9987765544321 000 0223333333 23456
Q ss_pred HHHHHHhccccCCCCEEEEecC
Q 024016 85 KDVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~~~ 106 (274)
.++++++.....+=.+||+..+
T Consensus 71 ~~~~~~~~~~~g~id~vi~~Ag 92 (287)
T PRK06194 71 EALADAALERFGAVHLLFNNAG 92 (287)
T ss_pred HHHHHHHHHHcCCCCEEEECCC
Confidence 6666665443333346776543
No 495
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=94.59 E-value=0.42 Score=35.98 Aligned_cols=97 Identities=19% Similarity=0.256 Sum_probs=71.5
Q ss_pred CCeEEEEcc----cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccHH
Q 024016 10 SFILGFIGA----GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVK 85 (274)
Q Consensus 10 ~~~IgiIG~----G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~ 85 (274)
.++|+++|+ .+-+...++.|.++|| +|+=. |....- +.+ +|-.++.|..+.-+.-|+|-+.-+++.+.
T Consensus 16 ~K~IAvVG~S~~P~r~sy~V~kyL~~~GY----~ViPV-NP~~~~-~ei--LG~k~y~sL~dIpe~IDiVdvFR~~e~~~ 87 (140)
T COG1832 16 AKTIAVVGASDKPDRPSYRVAKYLQQKGY----RVIPV-NPKLAG-EEI--LGEKVYPSLADIPEPIDIVDVFRRSEAAP 87 (140)
T ss_pred CceEEEEecCCCCCccHHHHHHHHHHCCC----EEEee-Ccccch-HHh--cCchhhhcHHhCCCCCcEEEEecChhhhH
Confidence 478999998 5678889999999999 88877 653221 121 57788888888888999999999999999
Q ss_pred HHHHHhccccCCCCEEEEecCCCCHHHHHHhh
Q 024016 86 DVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWT 117 (274)
Q Consensus 86 ~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~ 117 (274)
++.++.... +.-++=..-|+..+...+.+
T Consensus 88 ~i~~eal~~---~~kv~W~QlGi~n~ea~~~~ 116 (140)
T COG1832 88 EVAREALEK---GAKVVWLQLGIRNEEAAEKA 116 (140)
T ss_pred HHHHHHHhh---CCCeEEEecCcCCHHHHHHH
Confidence 999886543 23344445566655544433
No 496
>PRK07774 short chain dehydrogenase; Provisional
Probab=94.57 E-value=0.2 Score=41.65 Aligned_cols=42 Identities=19% Similarity=0.340 Sum_probs=35.0
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE 55 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~ 55 (274)
+.+++-|.|. |.+|..+++.|.+.|+ +|++. +|+++..+.+.
T Consensus 5 ~~k~vlItGasg~iG~~la~~l~~~g~----~vi~~-~r~~~~~~~~~ 47 (250)
T PRK07774 5 DDKVAIVTGAAGGIGQAYAEALAREGA----SVVVA-DINAEGAERVA 47 (250)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHH
Confidence 4468888886 9999999999999998 99999 99876655443
No 497
>PRK06138 short chain dehydrogenase; Provisional
Probab=94.57 E-value=0.46 Score=39.47 Aligned_cols=83 Identities=16% Similarity=0.176 Sum_probs=53.0
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---CcccH
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVV 84 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~~~ 84 (274)
+.+++.|.|+ |.+|..+++.|.+.|+ +|++. .|+.+..+...+. +. .+..+.++.. .++.+
T Consensus 4 ~~k~~lItG~sg~iG~~la~~l~~~G~----~v~~~-~r~~~~~~~~~~~-~~---------~~~~~~~~~~D~~~~~~~ 68 (252)
T PRK06138 4 AGRVAIVTGAGSGIGRATAKLFAREGA----RVVVA-DRDAEAAERVAAA-IA---------AGGRAFARQGDVGSAEAV 68 (252)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHCCC----eEEEe-cCCHHHHHHHHHH-Hh---------cCCeEEEEEcCCCCHHHH
Confidence 3468888866 9999999999999998 99999 8987766544321 00 0122222222 34567
Q ss_pred HHHHHHhccccCCCCEEEEecC
Q 024016 85 KDVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~~~ 106 (274)
.++++++...+.+=..+|++.+
T Consensus 69 ~~~~~~i~~~~~~id~vi~~ag 90 (252)
T PRK06138 69 EALVDFVAARWGRLDVLVNNAG 90 (252)
T ss_pred HHHHHHHHHHcCCCCEEEECCC
Confidence 7777766544433346776644
No 498
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=94.57 E-value=0.16 Score=47.24 Aligned_cols=34 Identities=12% Similarity=0.241 Sum_probs=30.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~ 47 (274)
..++|.|||.|..|...|..|.+.|+ +|+++ ++.
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~----~V~v~-e~~ 175 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGH----TVTVF-ERE 175 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCC----eEEEE-ecC
Confidence 34799999999999999999999998 89999 754
No 499
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=94.56 E-value=0.32 Score=40.87 Aligned_cols=81 Identities=17% Similarity=0.201 Sum_probs=51.1
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---CcccHHH
Q 024016 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVVKD 86 (274)
Q Consensus 11 ~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~~~~~ 86 (274)
|++-|.|. |.+|.++++.|.+.|+ +|++. +|++++.+++.+. +. + ..++.++.. .++.+++
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~----~V~~~-~r~~~~~~~~~~~-l~------~---~~~~~~~~~Dv~d~~~~~~ 65 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGA----RVVIS-SRNEENLEKALKE-LK------E---YGEVYAVKADLSDKDDLKN 65 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCC----EEEEE-eCCHHHHHHHHHH-HH------h---cCCceEEEcCCCCHHHHHH
Confidence 47888875 8899999999999999 99999 9998776554431 00 0 001222222 3455777
Q ss_pred HHHHhccccCCCCEEEEecC
Q 024016 87 VAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 87 v~~~i~~~l~~~~~vis~~~ 106 (274)
+++++...+.+=.++|+..+
T Consensus 66 ~~~~~~~~~g~id~li~naG 85 (259)
T PRK08340 66 LVKEAWELLGGIDALVWNAG 85 (259)
T ss_pred HHHHHHHhcCCCCEEEECCC
Confidence 77666544433346676543
No 500
>PRK07326 short chain dehydrogenase; Provisional
Probab=94.55 E-value=0.1 Score=43.11 Aligned_cols=41 Identities=12% Similarity=0.179 Sum_probs=35.1
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH
Q 024016 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE 55 (274)
Q Consensus 10 ~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~ 55 (274)
.++|.|+|. |.+|..+++.|++.|+ +|.+. +|++++.+.+.
T Consensus 6 ~~~ilItGatg~iG~~la~~l~~~g~----~V~~~-~r~~~~~~~~~ 47 (237)
T PRK07326 6 GKVALITGGSKGIGFAIAEALLAEGY----KVAIT-ARDQKELEEAA 47 (237)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCC----EEEEe-eCCHHHHHHHH
Confidence 467889975 9999999999999998 99999 99987766554
Done!