Your job contains 1 sequence.
>024018
MSLLRLYCCFPSTSYLYTEPQQQQSHEAPFVSLLQKQQKQHYNYFFPLSSSPFHAYTFPI
TPKKVSPFVFHFSATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRAL
FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK
KNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYG
FVSFKSKKVAETAISAFQGKVIMCLVIALSYLYL
The BLAST search returned 5 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 024018
(274 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2122368 - symbol:AT4G09040 species:3702 "Arabi... 649 1.2e-63 1
TAIR|locus:2062379 - symbol:AT2G35410 species:3702 "Arabi... 342 4.2e-31 1
TAIR|locus:2157702 - symbol:CP31B "chloroplast RNA-bindin... 207 1.2e-19 2
TAIR|locus:2202740 - symbol:AT1G60000 species:3702 "Arabi... 214 1.6e-17 1
TAIR|locus:2079874 - symbol:CP33 "chloroplast RNA-binding... 214 1.8e-17 1
TAIR|locus:2122009 - symbol:RBP31 "AT4G24770" species:370... 204 2.8e-16 1
TAIR|locus:2083810 - symbol:PSRP2 "plastid-specific... 196 1.3e-15 1
FB|FBgn0036018 - symbol:CG3335 species:7227 "Drosophila m... 150 1.1e-13 3
UNIPROTKB|Q6K271 - symbol:P0415D04.46-1 "FCA" species:399... 196 1.4e-13 1
UNIPROTKB|Q6WQT6 - symbol:Q6WQT6 "Flowering time control ... 196 1.4e-13 1
DICTYBASE|DDB_G0274523 - symbol:DDB_G0274523 "RNA recogni... 188 3.3e-12 1
TAIR|locus:2049721 - symbol:AT2G37220 species:3702 "Arabi... 127 9.5e-12 2
ZFIN|ZDB-GENE-031125-3 - symbol:rbm19 "RNA binding motif ... 161 1.2e-11 2
UNIPROTKB|Q9Y4C8 - symbol:RBM19 "Probable RNA-binding pro... 157 1.7e-11 2
UNIPROTKB|E9PTI5 - symbol:E9PTI5 "Uncharacterized protein... 179 2.4e-11 1
TAIR|locus:2094922 - symbol:PAB6 "poly(A) binding protein... 175 6.8e-11 1
UNIPROTKB|B1AM48 - symbol:ELAVL2 "ELAV-like protein 2" sp... 153 8.9e-11 1
UNIPROTKB|E2RRF5 - symbol:RBM19 "Uncharacterized protein"... 142 9.7e-11 2
RGD|3153 - symbol:Ncl "nucleolin" species:10116 "Rattus n... 174 1.5e-10 1
UNIPROTKB|H7BY16 - symbol:NCL "Nucleolin" species:9606 "H... 167 1.5e-10 1
UNIPROTKB|Q5U328 - symbol:Ncl "Nucleolin, isoform CRA_c" ... 174 1.5e-10 1
UNIPROTKB|B4KX02 - symbol:shep "Protein alan shepard" spe... 172 1.9e-10 1
WB|WBGene00003423 - symbol:msi-1 species:6239 "Caenorhabd... 166 2.6e-10 1
POMBASE|SPAC328.05 - symbol:SPAC328.05 "RNA-binding prote... 141 2.8e-10 2
UNIPROTKB|F1RKD1 - symbol:RBM19 "Uncharacterized protein"... 151 3.0e-10 2
UNIPROTKB|F1N0L5 - symbol:RBM19 "Uncharacterized protein"... 140 3.0e-10 2
UNIPROTKB|P08199 - symbol:NCL "Nucleolin" species:10036 "... 170 4.4e-10 1
CGD|CAL0004726 - symbol:orf19.7368 species:5476 "Candida ... 168 4.5e-10 1
FB|FBgn0004838 - symbol:Hrb27C "Heterogeneous nuclear rib... 166 5.3e-10 1
SGD|S000003391 - symbol:NSR1 "Nucleolar protein that bind... 162 5.5e-10 2
SGD|S000004961 - symbol:PUB1 "Poly (A)+ RNA-binding prote... 166 6.2e-10 1
UNIPROTKB|B3M3R5 - symbol:shep "Protein alan shepard" spe... 167 7.7e-10 1
TAIR|locus:4515103541 - symbol:AT5G08695 species:3702 "Ar... 127 9.2e-10 2
UNIPROTKB|Q98SP8 - symbol:epabp-a "Embryonic polyadenylat... 166 1.1e-09 1
UNIPROTKB|F1SMV6 - symbol:LOC100737174 "Uncharacterized p... 162 1.2e-09 1
UNIPROTKB|Q48A10 - symbol:CPS_0338 "RNA-binding protein" ... 143 1.2e-09 1
TIGR_CMR|CPS_0338 - symbol:CPS_0338 "RNA-binding protein"... 143 1.2e-09 1
ZFIN|ZDB-GENE-990415-246 - symbol:elavl4 "ELAV (embryonic... 162 1.5e-09 1
ZFIN|ZDB-GENE-040426-960 - symbol:rbm28 "RNA binding moti... 116 1.8e-09 2
UNIPROTKB|D4AC21 - symbol:Pabpc4 "Protein Pabpc4" species... 163 2.3e-09 1
UNIPROTKB|F1P1R2 - symbol:RBM19 "Uncharacterized protein"... 134 2.3e-09 2
UNIPROTKB|D4AC14 - symbol:Pabpc4 "Protein Pabpc4" species... 163 2.6e-09 1
UNIPROTKB|D3K5N7 - symbol:ELAVL1 "ELAV (Embryonic lethal,... 158 2.6e-09 1
UNIPROTKB|G3V9N0 - symbol:Pabpc4 "RCG31475, isoform CRA_a... 163 2.7e-09 1
UNIPROTKB|Q3ZCE2 - symbol:ELAVL1 "ELAV (Embryonic lethal,... 157 3.5e-09 1
UNIPROTKB|I3LRH2 - symbol:LOC100737210 "Uncharacterized p... 162 4.1e-09 1
UNIPROTKB|Q6DEY7 - symbol:epabp "Embryonic polyadenylate-... 161 4.3e-09 1
UNIPROTKB|F1PSC4 - symbol:ELAVL1 "Uncharacterized protein... 156 4.9e-09 1
UNIPROTKB|G3MYJ0 - symbol:G3MYJ0 "Uncharacterized protein... 160 5.7e-09 1
UNIPROTKB|G3MXT4 - symbol:G3MXT4 "Uncharacterized protein... 160 5.8e-09 1
UNIPROTKB|G3X7M4 - symbol:G3X7M4 "Uncharacterized protein... 160 5.8e-09 1
WB|WBGene00015943 - symbol:tiar-1 species:6239 "Caenorhab... 157 6.1e-09 1
UNIPROTKB|F1NLH0 - symbol:ELAVL4 "Uncharacterized protein... 156 6.4e-09 1
ASPGD|ASPL0000011897 - symbol:AN3739 species:162425 "Emer... 116 6.7e-09 2
UNIPROTKB|F1NEC5 - symbol:RBM19 "Uncharacterized protein"... 134 6.8e-09 2
WB|WBGene00012904 - symbol:tiar-2 species:6239 "Caenorhab... 157 6.9e-09 1
UNIPROTKB|P19338 - symbol:NCL "Nucleolin" species:9606 "H... 160 6.9e-09 1
UNIPROTKB|Q4R4J7 - symbol:NCL "Nucleolin" species:9541 "M... 160 6.9e-09 1
UNIPROTKB|Q5RF26 - symbol:NCL "Nucleolin" species:9601 "P... 160 6.9e-09 1
UNIPROTKB|F1Q0B0 - symbol:NCL "Uncharacterized protein" s... 160 7.0e-09 1
UNIPROTKB|E1B8K6 - symbol:NCL "Uncharacterized protein" s... 160 7.0e-09 1
UNIPROTKB|F1SV06 - symbol:PABPC4 "Uncharacterized protein... 159 7.5e-09 1
UNIPROTKB|F1N9I5 - symbol:ELAVL1 "Uncharacterized protein... 154 8.1e-09 1
MGI|MGI:1100851 - symbol:Elavl1 "ELAV (embryonic lethal, ... 154 8.1e-09 1
RGD|1308649 - symbol:Elavl1 "ELAV (embryonic lethal, abno... 154 8.1e-09 1
MGI|MGI:97286 - symbol:Ncl "nucleolin" species:10090 "Mus... 159 8.9e-09 1
UNIPROTKB|Q91903 - symbol:elavl2 "ELAV-like protein 2" sp... 155 9.3e-09 1
UNIPROTKB|D4A7H6 - symbol:Elavl2 "ELAV-like protein 2" sp... 154 9.5e-09 1
UNIPROTKB|E2R9I0 - symbol:PABPC4 "Uncharacterized protein... 158 9.8e-09 1
UNIPROTKB|A4IFC3 - symbol:PABPC4 "Uncharacterized protein... 158 1.0e-08 1
WB|WBGene00003902 - symbol:pab-1 species:6239 "Caenorhabd... 158 1.0e-08 1
MGI|MGI:1100887 - symbol:Elavl2 "ELAV (embryonic lethal, ... 154 1.0e-08 1
UNIPROTKB|H0Y5F5 - symbol:PABPC4 "Polyadenylate-binding p... 157 1.0e-08 1
UNIPROTKB|F1P336 - symbol:NCL "Nucleolin" species:9031 "G... 158 1.1e-08 1
UNIPROTKB|F1NU40 - symbol:NCL "Nucleolin" species:9031 "G... 158 1.1e-08 1
UNIPROTKB|P15771 - symbol:NCL "Nucleolin" species:9031 "G... 158 1.1e-08 1
UNIPROTKB|E2R9I1 - symbol:PABPC4 "Uncharacterized protein... 158 1.1e-08 1
UNIPROTKB|E1C240 - symbol:ELAVL2 "Uncharacterized protein... 154 1.2e-08 1
TAIR|locus:2122990 - symbol:AT4G19610 species:3702 "Arabi... 145 1.2e-08 2
UNIPROTKB|B1ANR0 - symbol:PABPC4 "Polyadenylate-binding p... 157 1.3e-08 1
UNIPROTKB|Q13310 - symbol:PABPC4 "Polyadenylate-binding p... 157 1.3e-08 1
UNIPROTKB|Q12926 - symbol:ELAVL2 "ELAV-like protein 2" sp... 153 1.3e-08 1
ZFIN|ZDB-GENE-980526-76 - symbol:elavl3 "ELAV (embryonic ... 153 1.3e-08 1
UNIPROTKB|Q15717 - symbol:ELAVL1 "ELAV-like protein 1" sp... 152 1.4e-08 1
UNIPROTKB|B1AM49 - symbol:ELAVL2 "ELAV-like protein 2" sp... 153 1.6e-08 1
UNIPROTKB|G3N063 - symbol:ELAVL2 "Uncharacterized protein... 153 1.6e-08 1
UNIPROTKB|E2RI94 - symbol:ELAVL2 "Uncharacterized protein... 153 1.6e-08 1
UNIPROTKB|B4DVB8 - symbol:ELAVL1 "ELAV-like protein 1" sp... 152 1.7e-08 1
RGD|628611 - symbol:Elavl2 "ELAV (embryonic lethal, abnor... 152 1.8e-08 1
UNIPROTKB|Q8CH84 - symbol:Elavl2 "ELAV-like protein 2" sp... 152 1.8e-08 1
UNIPROTKB|Q5U259 - symbol:elavl1-b "ELAV-like protein 1-B... 151 1.8e-08 1
ZFIN|ZDB-GENE-040704-9 - symbol:elavl2 "ELAV (embryonic l... 151 2.8e-08 1
UNIPROTKB|Q6GR16 - symbol:epabp-b "Embryonic polyadenylat... 154 2.9e-08 1
ZFIN|ZDB-GENE-030131-9663 - symbol:pabpc4 "poly(A) bindin... 154 3.0e-08 1
FB|FBgn0038345 - symbol:CG5213 species:7227 "Drosophila m... 146 3.0e-08 1
MGI|MGI:109157 - symbol:Elavl3 "ELAV (embryonic lethal, a... 150 3.2e-08 1
RGD|628892 - symbol:Elavl3 "ELAV (embryonic lethal, abnor... 150 3.2e-08 1
MGI|MGI:1921361 - symbol:Rbm19 "RNA binding motif protein... 147 3.5e-08 2
TAIR|locus:2200975 - symbol:AT1G01080 species:3702 "Arabi... 138 3.8e-08 2
UNIPROTKB|D4AAT0 - symbol:Elavl4 "ELAV-like protein 4" sp... 149 3.9e-08 1
WARNING: Descriptions of 555 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2122368 [details] [associations]
symbol:AT4G09040 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=IDA] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009570 EMBL:CP002687 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BT010910 EMBL:AK175121
EMBL:AK175672 EMBL:AK175723 EMBL:AK176316 EMBL:AK220985
IPI:IPI00527701 RefSeq:NP_192643.2 UniGene:At.33716
ProteinModelPortal:Q6NPL0 SMR:Q6NPL0 STRING:Q6NPL0 PRIDE:Q6NPL0
EnsemblPlants:AT4G09040.1 GeneID:826483 KEGG:ath:AT4G09040
TAIR:At4g09040 InParanoid:Q6NPL0 OMA:PTFNLFV PhylomeDB:Q6NPL0
ProtClustDB:CLSN2716082 Genevestigator:Q6NPL0 Uniprot:Q6NPL0
Length = 304
Score = 649 (233.5 bits), Expect = 1.2e-63, P = 1.2e-63
Identities = 130/209 (62%), Positives = 162/209 (77%)
Query: 54 HAYTFPIT-PKKVSPFVFHFSATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTS 112
HA TFP + P K +FS TTQ+P ++SSS+++ E EEE SKTRL+AQNVPWTS
Sbjct: 47 HA-TFPDSIPAKSRNLTSYFSTTTQEPVLESSSSSSSAPEVVEEEISKTRLIAQNVPWTS 105
Query: 113 THEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
T EDIR+LFE++G+V+DIE+SMH K RNRGL F+ M SP+EA AL +LES E+EGR LK
Sbjct: 106 TPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATALKSLESCEYEGRRLK 165
Query: 173 VNYAKIKKKNPFPPVQ-PKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD 231
V+YAK KKK + P + P P TFNLF+ANL+FEARAK L+EFF ++ +VVS EVIFH+
Sbjct: 166 VDYAKTKKKKTYAPRETPSPVPTFNLFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHE 225
Query: 232 NPRRSAGYGFVSFKSKKVAETAISAFQGK 260
NPRRS+GYGFVSFK+KK AE A+ FQGK
Sbjct: 226 NPRRSSGYGFVSFKTKKQAEAALIEFQGK 254
>TAIR|locus:2062379 [details] [associations]
symbol:AT2G35410 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009902
"chloroplast relocation" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0015979 "photosynthesis"
evidence=RCA] [GO:0015995 "chlorophyll biosynthetic process"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0034660
"ncRNA metabolic process" evidence=RCA] [GO:0042793 "transcription
from plastid promoter" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0009579 EMBL:AC005314
UniGene:At.48551 eggNOG:COG0724 HSSP:P11940 EMBL:AY042799
EMBL:BT000365 IPI:IPI00522747 PIR:C84768 RefSeq:NP_181084.1
ProteinModelPortal:O82299 SMR:O82299 STRING:O82299 PaxDb:O82299
PRIDE:O82299 EnsemblPlants:AT2G35410.1 GeneID:818107
KEGG:ath:AT2G35410 TAIR:At2g35410 HOGENOM:HOG000240991
InParanoid:O82299 OMA:VSNLAWK PhylomeDB:O82299
ProtClustDB:CLSN2720628 ArrayExpress:O82299 Genevestigator:O82299
Uniprot:O82299
Length = 308
Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
Identities = 76/204 (37%), Positives = 118/204 (57%)
Query: 73 SATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIEL 132
S ++ D ++ TE+ + K +L N+PW+ + DI LF Q GTV ++E+
Sbjct: 67 SVAEKETSADEETSQEEKTEETQNSNLKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEI 126
Query: 133 SMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK-IKKKNPFPP---VQ 188
+NRG AFVTM S +EA AA++ ++++ GR + V++A+ KK P P
Sbjct: 127 IRQKDGKNRGFAFVTMASGEEAQAAIDKFDTFQVSGRIISVSFARRFKKPTPKSPNDLPS 186
Query: 189 PKPFAT-FNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSK 247
P P T L+++NL+++AR+ LRE F + ++ VSA V+F D RS+GYGFVSF ++
Sbjct: 187 PAPGDTRHKLYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPEGRSSGYGFVSFATR 246
Query: 248 KVAETAISAFQGKVIMCLVIALSY 271
+ AE AI+ GK IM I L +
Sbjct: 247 EEAENAITKLNGKEIMGRPITLKF 270
>TAIR|locus:2157702 [details] [associations]
symbol:CP31B "chloroplast RNA-binding protein 31B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009451 "RNA modification"
evidence=IMP] [GO:0000023 "maltose metabolic process" evidence=RCA]
[GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0009409
"response to cold" evidence=RCA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0019252 "starch
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
evidence=RCA] [GO:0042742 "defense response to bacterium"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AB024031
eggNOG:COG0724 GO:GO:0009451 HOGENOM:HOG000276232 HSSP:P11940
ProtClustDB:CLSN2915857 UniGene:At.46085 UniGene:At.7917
EMBL:AY039868 EMBL:AY077660 IPI:IPI00537317 RefSeq:NP_199836.1
ProteinModelPortal:Q9FGS0 SMR:Q9FGS0 STRING:Q9FGS0 PaxDb:Q9FGS0
PRIDE:Q9FGS0 EnsemblPlants:AT5G50250.1 GeneID:835090
KEGG:ath:AT5G50250 TAIR:At5g50250 InParanoid:Q9FGS0 OMA:AAFRIYV
PhylomeDB:Q9FGS0 Genevestigator:Q9FGS0 Uniprot:Q9FGS0
Length = 289
Score = 207 (77.9 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 54/168 (32%), Positives = 87/168 (51%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKN--RNRGLAFVTMGSPDE 153
E + +L N+P+ + + LFEQ GTV +I +++++ ++RG FVTM + +E
Sbjct: 108 EPPEEAKLFVGNLPYDVDSQALAMLFEQAGTV-EISEVIYNRDTDQSRGFGFVTMSTVEE 166
Query: 154 ATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPF-ATFNLFIANLSFEARAKDLR 212
A A+ S+E GR L VN A + P QP+ + A F +++ NL ++ + L
Sbjct: 167 AEKAVEKFNSFEVNGRRLTVNRAAPRGSRP--ERQPRVYDAAFRIYVGNLPWDVDSGRLE 224
Query: 213 EFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
F SE VV A V+ RS G+GFV ++ AI+A G+
Sbjct: 225 RLF-SEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQ 271
Score = 131 (51.2 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 30/99 (30%), Positives = 48/99 (48%)
Query: 81 VDSSSAAAVNTEQREEEYSKT-RLVAQNVPWTSTHEDIRALFEQHGTVLDIEL-SMHSKN 138
V+ ++ E++ Y R+ N+PW + LF +HG V+D + S
Sbjct: 186 VNRAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETG 245
Query: 139 RNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177
R+RG FV M + +E A+ L+ EGR +KVN A+
Sbjct: 246 RSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVAE 284
Score = 41 (19.5 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 15/54 (27%), Positives = 26/54 (48%)
Query: 46 FPLSSSPFHAYTFPITPKKVSPFVFHFSATTQD--PFVDSSSAAAVNTEQREEE 97
F +SSS H + F ++ + V+ + S T ++ P V S + E+ E E
Sbjct: 30 FNISSSESHRFNFSLSSRPVNLTLSLKSKTLRNSSPVVTFVSQTSNWAEEEEGE 83
>TAIR|locus:2202740 [details] [associations]
symbol:AT1G60000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0019344 "cysteine biosynthetic process"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC005966 HOGENOM:HOG000276232 HSSP:P33240
EMBL:AF348590 EMBL:AY088142 EMBL:AK316953 IPI:IPI00532959
PIR:C96624 RefSeq:NP_176208.1 UniGene:At.17057
ProteinModelPortal:Q9ZUJ3 SMR:Q9ZUJ3 STRING:Q9ZUJ3 PRIDE:Q9ZUJ3
EnsemblPlants:AT1G60000.1 GeneID:842294 KEGG:ath:AT1G60000
TAIR:At1g60000 InParanoid:Q9ZUJ3 OMA:NVEDCNI PhylomeDB:Q9ZUJ3
ProtClustDB:CLSN2913540 ArrayExpress:Q9ZUJ3 Genevestigator:Q9ZUJ3
Uniprot:Q9ZUJ3
Length = 258
Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 54/160 (33%), Positives = 82/160 (51%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVTMGSPDEATAALN 159
T+L N+P+ + + + +E L ++RG AFVTM + ++ ++
Sbjct: 85 TKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIID 144
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEG 219
NL+ E+ GR LKVN+A K N P+ P+ LF+ NLS+ ++ L F G
Sbjct: 145 NLDGTEYLGRALKVNFADKPKPNK-EPLYPE--TEHKLFVGNLSWTVTSESLAGAFRECG 201
Query: 220 WDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
DVV A V+F + RS GYGFV + SK ETA+ + G
Sbjct: 202 -DVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDG 240
Score = 128 (50.1 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 31/90 (34%), Positives = 46/90 (51%)
Query: 94 REEEYSKT--RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKN-RNRGLAFVTMGS 150
+E Y +T +L N+ WT T E + F + G V+ + R+RG FV S
Sbjct: 168 KEPLYPETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSS 227
Query: 151 PDEATAALNNLESYEFEGRTLKVNYAKIKK 180
E AL +L+ +E EGR ++VN A+ KK
Sbjct: 228 KAEMETALESLDGFELEGRAIRVNLAQGKK 257
>TAIR|locus:2079874 [details] [associations]
symbol:CP33 "chloroplast RNA-binding protein 33"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009579
"thylakoid" evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0016226 "iron-sulfur cluster assembly"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0048481
"ovule development" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009579 HSSP:P19339
eggNOG:COG0724 HOGENOM:HOG000276232 EMBL:AL050300 UniGene:At.65006
UniGene:At.71002 EMBL:AY039607 EMBL:AY078022 EMBL:AY085279
EMBL:D31714 IPI:IPI00543679 PIR:S53494 RefSeq:NP_190806.1
ProteinModelPortal:Q39061 SMR:Q39061 STRING:Q39061 PaxDb:Q39061
PRIDE:Q39061 EnsemblPlants:AT3G52380.1 GeneID:824403
KEGG:ath:AT3G52380 TAIR:At3g52380 InParanoid:Q39061 OMA:FISFESA
PhylomeDB:Q39061 ProtClustDB:CLSN2684767 Genevestigator:Q39061
Uniprot:Q39061
Length = 329
Score = 214 (80.4 bits), Expect = 1.8e-17, P = 1.8e-17
Identities = 51/168 (30%), Positives = 96/168 (57%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAALN 159
RL N+P+T T ++ +F + GTV+D+++ ++ K +R+RG FVTMGS +EA A+
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQI-VYDKVTDRSRGFGFVTMGSIEEAKEAMQ 175
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPK------PF--ATFNLFIANLSFEARAKDL 211
S + GRT+KVN+ ++ + ++ K + + ++ NL + ++ L
Sbjct: 176 MFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGL 235
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
++ F + V+ A+VI+ N RS G+GF+SF+S + ++A++ G
Sbjct: 236 KDAFGDQP-GVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNG 282
>TAIR|locus:2122009 [details] [associations]
symbol:RBP31 "AT4G24770" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA;TAS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0045087 "innate
immune response" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0009451 "RNA modification" evidence=IMP]
[GO:0009073 "aromatic amino acid family biosynthetic process"
evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
[GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0045036
"protein targeting to chloroplast" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0009631 "cold acclimation" evidence=IMP] [GO:0016553 "base
conversion or substitution editing" evidence=IMP] [GO:0043489 "RNA
stabilization" evidence=IMP] [GO:0006396 "RNA processing"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009570 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0008266 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 GO:GO:0009631
GO:GO:0016553 GO:GO:0006396 GO:GO:0030529 EMBL:AL035356
EMBL:AL161562 GO:GO:0009535 eggNOG:COG0724 HOGENOM:HOG000276232
EMBL:M94554 EMBL:X65255 EMBL:U08467 EMBL:D31712 EMBL:D31713
IPI:IPI00523699 IPI:IPI00542634 IPI:IPI00760320 PIR:S28057
PIR:S53492 RefSeq:NP_194208.1 UniGene:At.38112 UniGene:At.70990
ProteinModelPortal:Q04836 SMR:Q04836 STRING:Q04836 PaxDb:Q04836
PRIDE:Q04836 ProMEX:Q04836 EnsemblPlants:AT4G24770.1 GeneID:828579
KEGG:ath:AT4G24770 GeneFarm:4009 TAIR:At4g24770 InParanoid:Q04836
OMA:NRYDLNG PhylomeDB:Q04836 ProtClustDB:CLSN2915857
Genevestigator:Q04836 GermOnline:AT4G24770 GO:GO:0043489
Uniprot:Q04836
Length = 329
Score = 204 (76.9 bits), Expect = 2.8e-16, P = 2.8e-16
Identities = 56/181 (30%), Positives = 85/181 (46%)
Query: 82 DSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRN 140
D S A + E + +L N+ + + + LFEQ GTV E+ + + +++
Sbjct: 131 DVSEGAVSERAEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQS 190
Query: 141 RGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA-TFNLFI 199
RG FVTM S DEA A+ Y+ GR L VN K + P P+ + F +++
Sbjct: 191 RGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVN--KAAPRGSRPERAPRVYEPAFRVYV 248
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
NL ++ L + F SE VV A V++ RS G+GFV+ AISA G
Sbjct: 249 GNLPWDVDNGRLEQLF-SEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDG 307
Query: 260 K 260
+
Sbjct: 308 Q 308
Score = 130 (50.8 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 29/99 (29%), Positives = 49/99 (49%)
Query: 81 VDSSSAAAVNTEQREEEYSKT-RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKN- 138
V+ ++ E+ Y R+ N+PW + + LF +HG V++ + +
Sbjct: 223 VNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETG 282
Query: 139 RNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177
R+RG FVTM DE A++ L+ EGR ++VN A+
Sbjct: 283 RSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAE 321
>TAIR|locus:2083810 [details] [associations]
symbol:PSRP2 "plastid-specific ribosomal protein 2"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009773
"photosynthetic electron transport in photosystem I" evidence=RCA]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0045036 "protein
targeting to chloroplast" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0009941 GO:GO:0003676 GO:GO:0009535 KO:K13126 HSSP:Q61474
EMBL:AY070427 EMBL:AY133746 IPI:IPI00523226 RefSeq:NP_001030841.1
RefSeq:NP_566958.3 UniGene:At.3215 ProteinModelPortal:Q8VYM4
SMR:Q8VYM4 STRING:Q8VYM4 PRIDE:Q8VYM4 ProMEX:Q8VYM4
EnsemblPlants:AT3G52150.1 EnsemblPlants:AT3G52150.2 GeneID:824379
KEGG:ath:AT3G52150 TAIR:At3g52150 InParanoid:Q8VYM4 OMA:AEVMYDK
PhylomeDB:Q8VYM4 ProtClustDB:CLSN2918324 ArrayExpress:Q8VYM4
Genevestigator:Q8VYM4 Uniprot:Q8VYM4
Length = 253
Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 63/227 (27%), Positives = 105/227 (46%)
Query: 49 SSSPFHAYTFPITPKKVSPFVFHFSATTQDPFVDSSSAAAVNTEQREEEYSKT-----RL 103
S +P H + K FS +++ F+ A TE++ + R+
Sbjct: 22 SFTPLHTRVNVFSSKPFPSLAGTFSRSSRTRFIPY---AVTETEEKPAALDPSSEAARRV 78
Query: 104 VAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAALNNL 161
N+P T T+E + L E+HG V +++ M+ K R+R F TM S ++A A + L
Sbjct: 79 YIGNIPRTVTNEQLTKLVEEHGAVEKVQV-MYDKYSGRSRRFGFATMKSVEDANAVVEKL 137
Query: 162 ESYEFEGRTLKVNYAK--IKKKNPFPPVQPKPFA----TFNLFIANLSFEARAKDLREFF 215
EGR +KVN + I +Q + A + +++ NL+ + K++ E
Sbjct: 138 NGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLA-KTVTKEMLENL 196
Query: 216 ISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
SE VVSA+V +S G+GFV+F S++ E AI A ++
Sbjct: 197 FSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLL 243
>FB|FBgn0036018 [details] [associations]
symbol:CG3335 species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0004386 eggNOG:COG0724 HSSP:Q61474 EMBL:AY113652
ProteinModelPortal:Q8MYR4 SMR:Q8MYR4 STRING:Q8MYR4 PaxDb:Q8MYR4
PRIDE:Q8MYR4 FlyBase:FBgn0036018 HOGENOM:HOG000132447
InParanoid:Q8MYR4 OrthoDB:EOG4M63ZP ArrayExpress:Q8MYR4 Bgee:Q8MYR4
Uniprot:Q8MYR4
Length = 918
Score = 150 (57.9 bits), Expect = 1.1e-13, Sum P(3) = 1.1e-13
Identities = 33/92 (35%), Positives = 55/92 (59%)
Query: 94 REEEYSKT-RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRN-RGLAFVTMGSP 151
+E++ S++ R+ +N+ +T+T ED+R LFEQ G V+++ L + R +G VT P
Sbjct: 356 KEDDISESGRIFFRNLAYTTTEEDLRKLFEQFGPVVEVNLPLDKLTRKIKGFGTVTYMMP 415
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKKNP 183
+ A A N L+ +F GR L + +K +KNP
Sbjct: 416 EHALKAFNTLDGTDFHGRLLHLLPSKDIEKNP 447
Score = 95 (38.5 bits), Expect = 1.1e-13, Sum P(3) = 1.1e-13
Identities = 26/76 (34%), Positives = 41/76 (53%)
Query: 188 QPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFH---DNPR--RSAGYGFV 242
+P+P T LF+ NL+F+ + + + F G + + E+ +NPR +S GYGF+
Sbjct: 674 EPEPNTT--LFLRNLNFKTVQETVEKHFRHLG-SIHTVEIAKRRDPENPREFKSLGYGFI 730
Query: 243 SFKSKKVAETAISAFQ 258
FK VAE A+ Q
Sbjct: 731 QFKKSSVAEHALKNLQ 746
Score = 82 (33.9 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 15/63 (23%), Positives = 34/63 (53%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
+R++ + +P T + +R +F GT+ D++L + R FV + +EA +A+ +
Sbjct: 2 SRIIVKQLPKHITEDKLRQIFGAQGTITDLQLKYTPDGKFRQFCFVGYSTEEEAQSAIRH 61
Query: 161 LES 163
++
Sbjct: 62 FDN 64
Score = 43 (20.2 bits), Expect = 1.1e-13, Sum P(3) = 1.1e-13
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 61 TPKKVSPFVFHFSATT-QDPFVDSSSAAAVNTEQREEEYSK 100
T ++ + HF T Q V S AA+ +E + + +SK
Sbjct: 51 TEEEAQSAIRHFDNTCIQTSRVRVESCAALGSEDKPQSWSK 91
>UNIPROTKB|Q6K271 [details] [associations]
symbol:P0415D04.46-1 "FCA" species:39947 "Oryza sativa
Japonica Group" [GO:0003723 "RNA binding" evidence=ISS] [GO:0009909
"regulation of flower development" evidence=ISS] [GO:0044428
"nuclear part" evidence=ISS] InterPro:IPR000504 InterPro:IPR001202
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00397
PRINTS:PR00961 PROSITE:PS50020 PROSITE:PS50102 SMART:SM00360
SMART:SM00456 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0009790 GO:GO:0031048 GO:GO:0009909 GO:GO:0009553
Gene3D:2.20.70.10 SUPFAM:SSF51045 GO:GO:0044428 EMBL:AY654584
EMBL:AY730687 EMBL:AP006062 EnsemblPlants:LOC_Os09g03610.1
EnsemblPlants:LOC_Os09g03610.2 OMA:WTEHTSP Uniprot:Q6K271
Length = 738
Score = 196 (74.1 bits), Expect = 1.4e-13, P = 1.4e-13
Identities = 55/166 (33%), Positives = 87/166 (52%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKN-RNRGLAFVTMGSPDEATAALNN 160
+L +VP T+T +D+R LFE+HG V+++ L K +G FV + +EA A+
Sbjct: 123 KLFIGSVPRTATEDDVRPLFEEHGDVVEVALIKDRKTGEQQGCCFVKYATSEEAERAIRA 182
Query: 161 LES-YEFEGRT--LKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
L + Y G ++V YA +++ ++ K LF+A+L+ +A AK++ E F
Sbjct: 183 LHNQYTLPGAMGPIQVRYADGERER-HGAIEHK------LFVASLNKQATAKEIEEIFAP 235
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
G V I D R+S G GFV F S++ A A+SA G +M
Sbjct: 236 YGH--VEDVYIMKDGMRQSRGCGFVKFSSREPALAAMSALSGNYVM 279
>UNIPROTKB|Q6WQT6 [details] [associations]
symbol:Q6WQT6 "Flowering time control protein isoform
OsFCA-1" species:39946 "Oryza sativa Indica Group" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0009909 "regulation of flower
development" evidence=ISS] [GO:0044428 "nuclear part" evidence=ISS]
InterPro:IPR000504 InterPro:IPR001202 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00397 PRINTS:PR00961
PROSITE:PS50020 PROSITE:PS50102 SMART:SM00360 SMART:SM00456
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009790
GO:GO:0031048 GO:GO:0009909 GO:GO:0009553 Gene3D:2.20.70.10
SUPFAM:SSF51045 GO:GO:0044428 EMBL:AY274928
ProteinModelPortal:Q6WQT6 KEGG:dosa:Os09t0123200-01 Gramene:Q6WQT6
Uniprot:Q6WQT6
Length = 738
Score = 196 (74.1 bits), Expect = 1.4e-13, P = 1.4e-13
Identities = 55/166 (33%), Positives = 87/166 (52%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKN-RNRGLAFVTMGSPDEATAALNN 160
+L +VP T+T +D+R LFE+HG V+++ L K +G FV + +EA A+
Sbjct: 123 KLFIGSVPRTATEDDVRPLFEEHGDVVEVALIKDRKTGEQQGCCFVKYATSEEAERAIRA 182
Query: 161 LES-YEFEGRT--LKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
L + Y G ++V YA +++ ++ K LF+A+L+ +A AK++ E F
Sbjct: 183 LHNQYTLPGAMGPIQVRYADGERER-HGAIEHK------LFVASLNKQATAKEIEEIFAP 235
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
G V I D R+S G GFV F S++ A A+SA G +M
Sbjct: 236 YGH--VEDVYIMKDGMRQSRGCGFVKFSSREPALAAMSALSGNYVM 279
>DICTYBASE|DDB_G0274523 [details] [associations]
symbol:DDB_G0274523 "RNA recognition motif-containing
protein RRM" species:44689 "Dictyostelium discoideum" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0274523 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000012 eggNOG:COG0724
RefSeq:XP_644081.1 ProteinModelPortal:Q86HL7 PRIDE:Q86HL7
EnsemblProtists:DDB0233759 GeneID:8619510 KEGG:ddi:DDB_G0274523
InParanoid:Q86HL7 OMA:QNNHHDP Uniprot:Q86HL7
Length = 904
Score = 188 (71.2 bits), Expect = 3.3e-12, P = 3.3e-12
Identities = 49/172 (28%), Positives = 87/172 (50%)
Query: 88 AVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVT 147
+VN ++ E E +T + +++P+ ED+ LF ++G VL ++ + K + G FV
Sbjct: 96 SVNNKELELERDQTNVFVKHLPYEFNDEDLENLFSKYGKVLSSKVMIDPKGNSYGYGFVR 155
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEAR 207
SP E+ AA+ L+ Y+++ + L + N + + K + + NLFI L ++
Sbjct: 156 FSSPQESAAAIEELDGYQYQNKKLLCRLS-----NLYTNLNSK-YPSNNLFIKPLPYDVT 209
Query: 208 AKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
LR+ F G ++ +V+ D+ +S GFV F S+ A AI A G
Sbjct: 210 DDQLRKLFEPFG-KIIECKVML-DHNGQSKFAGFVRFSSELDASKAIDAMNG 259
>TAIR|locus:2049721 [details] [associations]
symbol:AT2G37220 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009409
"response to cold" evidence=IEP;RCA] [GO:0010319 "stromule"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP] [GO:0009534
"chloroplast thylakoid" evidence=IDA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0019684
"photosynthesis, light reaction" evidence=RCA] [GO:0042742 "defense
response to bacterium" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0008266 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AC005896
GO:GO:0030529 GO:GO:0009535 GO:GO:0010319 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AC006260 KO:K11294 EMBL:AF370167
EMBL:AY048251 EMBL:AY059129 IPI:IPI00540246 PIR:A84790
RefSeq:NP_181259.1 UniGene:At.25300 ProteinModelPortal:Q9ZUU4
SMR:Q9ZUU4 IntAct:Q9ZUU4 STRING:Q9ZUU4 SWISS-2DPAGE:Q9ZUU4
PaxDb:Q9ZUU4 PRIDE:Q9ZUU4 ProMEX:Q9ZUU4 EnsemblPlants:AT2G37220.1
GeneID:818299 KEGG:ath:AT2G37220 GeneFarm:4058 TAIR:At2g37220
InParanoid:Q9ZUU4 OMA:PFNVDSA PhylomeDB:Q9ZUU4
ProtClustDB:CLSN2684922 Genevestigator:Q9ZUU4 GermOnline:AT2G37220
Uniprot:Q9ZUU4
Length = 289
Score = 127 (49.8 bits), Expect = 9.5e-12, Sum P(2) = 9.5e-12
Identities = 44/135 (32%), Positives = 64/135 (47%)
Query: 46 FPLSSSPFHAYTFPITPKKVSPFVFHFS---ATTQDPFVDSSSAAAVNTEQREEEYSKT- 101
F L+S + +F I K SP F+ A T + V+ A V +E+ +S
Sbjct: 37 FKLNSD---SVSFSIAAKWNSP-ASRFARNVAITSEFEVEEDGFADV-APPKEQSFSADL 91
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAALN 159
+L N+P+ + LFE G V +E+ ++ K R+RG FVTM S E AA
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEV-IYDKITGRSRGFGFVTMSSVSEVEAAAQ 150
Query: 160 NLESYEFEGRTLKVN 174
YE +GR L+VN
Sbjct: 151 QFNGYELDGRPLRVN 165
Score = 93 (37.8 bits), Expect = 9.5e-12, Sum P(2) = 9.5e-12
Identities = 21/63 (33%), Positives = 34/63 (53%)
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
+++ NLS+ L F +G VV A VI+ + RS G+GFV++ S + + AI +
Sbjct: 206 VYVGNLSWGVDDMALESLFSEQG-KVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264
Query: 257 FQG 259
G
Sbjct: 265 LDG 267
>ZFIN|ZDB-GENE-031125-3 [details] [associations]
symbol:rbm19 "RNA binding motif protein 19"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0048546 "digestive
tract morphogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-031125-3 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0048546 HOGENOM:HOG000211156 HOVERGEN:HBG055637
EMBL:AY648773 IPI:IPI00654470 UniGene:Dr.79791
ProteinModelPortal:Q6DRI6 SMR:Q6DRI6 STRING:Q6DRI6 PRIDE:Q6DRI6
InParanoid:Q6DRI6 Bgee:Q6DRI6 Uniprot:Q6DRI6
Length = 927
Score = 161 (61.7 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 32/92 (34%), Positives = 59/92 (64%)
Query: 92 EQREEEYSKT-RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRN-RGLAFVTMG 149
++ EE+ +++ RL +N+P+T T ED++ LF +HG + ++ + S + +G AFVT
Sbjct: 389 DEEEEDVAESGRLFIRNMPYTCTEEDLKELFSKHGPLSEVLFPIDSLTKKPKGFAFVTYM 448
Query: 150 SPDEATAALNNLESYEFEGRTLKVNYAKIKKK 181
P+ A +AL L+ + F+GR L V +++KK+
Sbjct: 449 IPENAVSALAQLDGHTFQGRVLHVMASRLKKE 480
Score = 124 (48.7 bits), Expect = 0.00013, P = 0.00013
Identities = 50/226 (22%), Positives = 95/226 (42%)
Query: 40 QHYNYFFPLSSSPFHAYTFPITPKKVSPFVFHFSATTQDPFVDSSSAAAVNTEQREEEYS 99
QH + L +P +T P P+ P SA D + E+ ++
Sbjct: 646 QHVPLY--LEWAPVAVFTTPSAPRP-EPQTKEKSAVKNDSVQNEEEEE--EEEEDDQILP 700
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH----SKNRNRGLAFVTMGSPDEAT 155
+ L +N+ + ++ E ++ F + G V +S K + G FV +P+ A
Sbjct: 701 GSTLFIKNLNFITSEETLQKTFSKCGVVKSCTISKKRDKAGKLLSMGYGFVQYKTPEAAQ 760
Query: 156 AALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA-----TFNLFIANLSFEARAKD 210
A+ L+ + L+V ++ + K+ + K T + + N+ F+A K+
Sbjct: 761 KAMRQLQHCTVDEHQLEVKISEREVKSGVAQAKRKKQTARKQTTSKILVRNIPFQATVKE 820
Query: 211 LREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
LRE F + G ++ + + G+GF+ F +K+ A+ A SA
Sbjct: 821 LRELFCTFG-ELKTVRLPKKGIGGSHRGFGFIDFLTKQDAKKAFSA 865
Score = 68 (29.0 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 22/66 (33%), Positives = 33/66 (50%)
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRR----SAGYGFVSFKSKKVAET 252
LFI NL+F + L++ F G VV + I + S GYGFV +K+ + A+
Sbjct: 704 LFIKNLNFITSEETLQKTFSKCG--VVKSCTISKKRDKAGKLLSMGYGFVQYKTPEAAQK 761
Query: 253 AISAFQ 258
A+ Q
Sbjct: 762 AMRQLQ 767
>UNIPROTKB|Q9Y4C8 [details] [associations]
symbol:RBM19 "Probable RNA-binding protein 19" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730
"nucleolus" evidence=ISS;IDA] [GO:0005737 "cytoplasm"
evidence=ISS;IDA] [GO:0040019 "positive regulation of embryonic
development" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005737 GO:GO:0005694
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0040019 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV EMBL:AB014582 EMBL:AL117547
EMBL:AC009731 EMBL:AC073863 EMBL:AC090669 EMBL:BC004289
EMBL:BC006137 IPI:IPI00000686 PIR:T17297 RefSeq:NP_001140170.1
RefSeq:NP_001140171.1 RefSeq:NP_057280.2 UniGene:Hs.7482 PDB:2DGW
PDBsum:2DGW ProteinModelPortal:Q9Y4C8 SMR:Q9Y4C8 MINT:MINT-1196129
STRING:Q9Y4C8 PhosphoSite:Q9Y4C8 DMDM:308153566 SWISS-2DPAGE:Q9Y4C8
PaxDb:Q9Y4C8 PRIDE:Q9Y4C8 DNASU:9904 Ensembl:ENST00000261741
Ensembl:ENST00000392561 Ensembl:ENST00000545145 GeneID:9904
KEGG:hsa:9904 UCSC:uc001tvm.3 CTD:9904 GeneCards:GC12M114259
HGNC:HGNC:29098 HPA:HPA038860 neXtProt:NX_Q9Y4C8
PharmGKB:PA134886784 HOVERGEN:HBG055637 InParanoid:Q9Y4C8
OrthoDB:EOG4D7Z56 PhylomeDB:Q9Y4C8 ChiTaRS:RBM19
EvolutionaryTrace:Q9Y4C8 GenomeRNAi:9904 NextBio:37345 Bgee:Q9Y4C8
CleanEx:HS_RBM19 Genevestigator:Q9Y4C8 GermOnline:ENSG00000122965
Uniprot:Q9Y4C8
Length = 960
Score = 157 (60.3 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 59/227 (25%), Positives = 105/227 (46%)
Query: 47 PLSSSPFHAYTFPI--TPKKVSPFVFHFSATTQDPFVDSSSAAAVNTEQREEEYSKT--- 101
P+ P T P TP+ +P T++ D+SSA E+ EEE ++
Sbjct: 679 PMEKDPAEPETVPDGETPEDENP--------TEEG-ADNSSAKMEEEEEEEEEEEESLPG 729
Query: 102 -RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR-----NRGLAFVTMGSPDEAT 155
L +N+ + +T E ++ +F + GTV +S KN+ + G FV P++A
Sbjct: 730 CTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISK-KKNKAGVLLSMGFGFVEYRKPEQAQ 788
Query: 156 AALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQ----PKPFATFNLFIANLSFEARAKDL 211
AL L+ + +G L+V ++ K + P+ T + + N+ F+A ++++
Sbjct: 789 KALKQLQGHVVDGHKLEVRISERATKPAVTLARKKQVPRKQTTSKILVRNIPFQAHSREI 848
Query: 212 REFFISEGW--DVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
RE F + G V + + R G+GFV F +K+ A+ A +A
Sbjct: 849 RELFSTFGELKTVRLPKKMTGTGTHR--GFGFVDFLTKQDAKRAFNA 893
Score = 143 (55.4 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 30/91 (32%), Positives = 55/91 (60%)
Query: 93 QREEEYSKT-RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRN-RGLAFVTMGS 150
+ EE+ +++ RL +N+P+TST ED+ LF ++G + ++ + S + +G AF+T
Sbjct: 393 EEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMF 452
Query: 151 PDEATAALNNLESYEFEGRTLKVNYAKIKKK 181
P+ A A + ++ F+GR L V + IKK+
Sbjct: 453 PEHAVKAYSEVDGQVFQGRMLHVLPSTIKKE 483
Score = 88 (36.0 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 25/90 (27%), Positives = 43/90 (47%)
Query: 176 AKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRR 235
AK++++ + + LFI NL+F+ + L+E F G V S + N
Sbjct: 711 AKMEEEEEEEEEEEESLPGCTLFIKNLNFDTTEEKLKEVFSKVG-TVKSCSISKKKNKAG 769
Query: 236 ---SAGYGFVSFKSKKVAETAISAFQGKVI 262
S G+GFV ++ + A+ A+ QG V+
Sbjct: 770 VLLSMGFGFVEYRKPEQAQKALKQLQGHVV 799
Score = 79 (32.9 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 20/77 (25%), Positives = 32/77 (41%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
+RL+ +N+P E R LF GT+ D L + R F+ S +EA A +
Sbjct: 2 SRLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQKAQKH 61
Query: 161 LESYEFEGRTLKVNYAK 177
+ + V + K
Sbjct: 62 FNKSFIDTSRITVEFCK 78
>UNIPROTKB|E9PTI5 [details] [associations]
symbol:E9PTI5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 IPI:IPI01007589
Ensembl:ENSRNOT00000011480 Uniprot:E9PTI5
Length = 567
Score = 179 (68.1 bits), Expect = 2.4e-11, P = 2.4e-11
Identities = 52/164 (31%), Positives = 90/164 (54%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAAL 158
SKT LV N+ +++T E ++ +FE+ T + + + H K++ G AF+ S ++A AL
Sbjct: 342 SKT-LVLSNLSYSATEETLQEVFEK-ATFIKVPQNPHGKSK--GYAFIEFASFEDAKEAL 397
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISE 218
N+ E EGRT+++ +++ P + +P T LF+ LS + + L+E F E
Sbjct: 398 NSCNKMEIEGRTIRL---ELQGPRGSPNARSQPSKT--LFVKGLSEDTTEETLKESF--E 450
Query: 219 GWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ-GKV 261
G V A ++ S G+GFV F S++ A+TA A + G++
Sbjct: 451 G--SVRARIVTDRETGSSKGFGFVDFNSEEDAKTAKEAMEDGEI 492
Score = 118 (46.6 bits), Expect = 0.00032, P = 0.00032
Identities = 38/157 (24%), Positives = 79/157 (50%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLE 162
L+A+N+ + T ++++ +FE ++I L + R++G+A++ S +A L +
Sbjct: 253 LLAKNLSFNITEDELKEVFED---AVEIRL-VSQDGRSKGIAYIEFKSEADAEKNLEEKQ 308
Query: 163 SYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA--TFNLFIANLSFEARAKDLREFFISEGW 220
E +GR++ + Y K + + ++ + L ++NLS+ A + L+E F +
Sbjct: 309 GAEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATF 368
Query: 221 DVVSAEVIFHDNPR-RSAGYGFVSFKSKKVAETAISA 256
V NP +S GY F+ F S + A+ A+++
Sbjct: 369 IKVP------QNPHGKSKGYAFIEFASFEDAKEALNS 399
>TAIR|locus:2094922 [details] [associations]
symbol:PAB6 "poly(A) binding protein 6" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0016071 GO:GO:0000166
GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB023046
EMBL:AC001645 eggNOG:COG0724 KO:K13126 HOGENOM:HOG000217922
HSSP:P11940 IPI:IPI00530520 RefSeq:NP_188259.1 UniGene:At.51274
ProteinModelPortal:O04319 SMR:O04319 EnsemblPlants:AT3G16380.1
GeneID:820885 KEGG:ath:AT3G16380 TAIR:At3g16380 InParanoid:O04319
OMA:CKVVEEN PhylomeDB:O04319 ProtClustDB:CLSN2913349
Genevestigator:O04319 Uniprot:O04319
Length = 537
Score = 175 (66.7 bits), Expect = 6.8e-11, P = 6.8e-11
Identities = 60/197 (30%), Positives = 93/197 (47%)
Query: 86 AAAVNTEQREE---EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRG 142
A +N ++R T + +N+ T T + + LF Q+GTV + + R+RG
Sbjct: 184 AKFINKDERAAMAGNQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRG 243
Query: 143 LAFVTMGSPDEATAALNNLESYE------FEGRTLKVNYAKIKKKNPFPP-VQPKPFATF 195
FV +P+ A A+ +L + F G+ LK + + K F KP +
Sbjct: 244 FGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKPNMRW 303
Query: 196 -NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKS---KKVAE 251
NL++ NLS LRE F G +VSA+V+ H+N R S G+GFV F + K A+
Sbjct: 304 SNLYVKNLSESMNETRLREIFGCYG-QIVSAKVMCHENGR-SKGFGFVCFSNCEESKQAK 361
Query: 252 TAISAF--QGKVIMCLV 266
++ F GK I+ V
Sbjct: 362 RYLNGFLVDGKPIVVRV 378
Score = 115 (45.5 bits), Expect = 0.00065, P = 0.00065
Identities = 36/151 (23%), Positives = 75/151 (49%)
Query: 113 THEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTL 171
T +D+ F + V+ + L +S ++ A++ SP A+ A+ L + +G+ +
Sbjct: 33 TEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTRLNHSDLKGKAM 92
Query: 172 KVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD 231
++ +++ + + FA NL++ NL + L F G ++S +V+ +
Sbjct: 93 RIMWSQ--RDLAYRRRTRTGFA--NLYVKNLDSSITSSCLERMFCPFG-SILSCKVV-EE 146
Query: 232 NPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
N + S G+GFV F +++ A +A SA G ++
Sbjct: 147 NGQ-SKGFGFVQFDTEQSAVSARSALHGSMV 176
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 153 (58.9 bits), Expect = 8.9e-11, P = 8.9e-11
Identities = 43/181 (23%), Positives = 84/181 (46%)
Query: 81 VDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNR 139
++++ ++ V++ E+ SKT L+ +P T E++++LF G + +L +
Sbjct: 21 INNNCSSPVDSGNTED--SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQ 78
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI 199
+ G FV P +A A+N L + +T+KV+YA+ + NL++
Sbjct: 79 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYV 129
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ L K+L + F G ++++ ++ S G GF+ F + AE AI G
Sbjct: 130 SGLPKTMTQKELEQLFSQYG-RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Query: 260 K 260
+
Sbjct: 189 Q 189
>UNIPROTKB|E2RRF5 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:AAEX03014696
Ensembl:ENSCAFT00000014561 Uniprot:E2RRF5
Length = 968
Score = 142 (55.0 bits), Expect = 9.7e-11, Sum P(2) = 9.7e-11
Identities = 38/112 (33%), Positives = 59/112 (52%)
Query: 75 TTQDPFVDSSSAAAVNT--EQREEE--YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDI 130
TT+ P +S+ T E EEE RL +N+P+TST ED++ LF + G + ++
Sbjct: 375 TTKGPLKNSAKPWQGRTLGENEEEEDLADSGRLFIRNLPYTSTEEDLQRLFSKFGPLSEL 434
Query: 131 ELSMHSKNRN-RGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+ S + +G AFVT P+ A A ++ F+GR L V + IKK+
Sbjct: 435 HYPIDSLTKKPKGFAFVTFIFPEHAVRAYAEVDGQVFQGRMLHVLPSTIKKE 486
Score = 133 (51.9 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 43/176 (24%), Positives = 81/176 (46%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR-----NRGLAFV 146
E+ EE L +N+ +++T E ++ +F + G V +S KN+ + G FV
Sbjct: 721 EEEEESLPGCTLFIKNLNFSTTEETLKGVFSKAGMVKSCSISK-KKNKAGELLSMGFGFV 779
Query: 147 TMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQ----PKPFATFNLFIANL 202
P++A AL L+ + + L+V ++ K + P+ T + + N+
Sbjct: 780 EYRKPEQAQKALKQLQGHVVDSHKLEVRISERATKPALTSTRKKQVPRKQTTSKILVRNI 839
Query: 203 SFEARAKDLREFFISEGW--DVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
F+A ++++E F + G V + + R G+GFV F +K+ A+ A A
Sbjct: 840 PFQADKREIQELFSTFGELKTVRLPKKMTGTGTHR--GFGFVDFLTKQDAKRAFQA 893
Score = 90 (36.7 bits), Expect = 8.5e-05, Sum P(2) = 8.5e-05
Identities = 21/77 (27%), Positives = 35/77 (45%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
+RL+ +N+P + R LF GT+ D L + R F+ S +EA +ALN+
Sbjct: 2 SRLIVKNLPNGMKEDRFRQLFASFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEALSALNH 61
Query: 161 LESYEFEGRTLKVNYAK 177
+ + V + K
Sbjct: 62 FNRSFIDTSRITVEFCK 78
Score = 82 (33.9 bits), Expect = 9.7e-11, Sum P(2) = 9.7e-11
Identities = 24/90 (26%), Positives = 41/90 (45%)
Query: 176 AKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRR 235
AK++++ + + LFI NL+F + L+ F G V S + N
Sbjct: 711 AKVEEEEEEEEEEEESLPGCTLFIKNLNFSTTEETLKGVFSKAGM-VKSCSISKKKNKAG 769
Query: 236 ---SAGYGFVSFKSKKVAETAISAFQGKVI 262
S G+GFV ++ + A+ A+ QG V+
Sbjct: 770 ELLSMGFGFVEYRKPEQAQKALKQLQGHVV 799
>RGD|3153 [details] [associations]
symbol:Ncl "nucleolin" species:10116 "Rattus norvegicus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005938 "cell cortex" evidence=ISO] [GO:0008022
"protein C-terminus binding" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:3153 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 eggNOG:COG0724 HOVERGEN:HBG002295
OrthoDB:EOG45MN5J EMBL:M55022 EMBL:M55015 EMBL:M55017 EMBL:M55020
EMBL:M22090 IPI:IPI00882501 PIR:JH0148 UniGene:Rn.144561
UniGene:Rn.7735 ProteinModelPortal:P13383 SMR:P13383 IntAct:P13383
STRING:P13383 PhosphoSite:P13383 PRIDE:P13383 UCSC:RGD:3153
InParanoid:P13383 ArrayExpress:P13383 Genevestigator:P13383
GermOnline:ENSRNOG00000018273 Uniprot:P13383
Length = 713
Score = 174 (66.3 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 51/164 (31%), Positives = 89/164 (54%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAAL 158
SKT LV N+ +++T E ++ +FE+ T + + + H K++ G AF+ S ++A AL
Sbjct: 488 SKT-LVLSNLSYSATEETLQEVFEK-ATFIKVPQNPHGKSK--GYAFIEFASFEDAKEAL 543
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISE 218
N+ E EGRT+++ +++ P + +P T LF+ LS + + L+E F E
Sbjct: 544 NSCNKMEIEGRTIRL---ELQGPRGSPNARSQPSKT--LFVKGLSEDTTEETLKESF--E 596
Query: 219 GWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ-GKV 261
G V A ++ S G+GFV F S++ A+ A A + G++
Sbjct: 597 G--SVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI 638
Score = 118 (46.6 bits), Expect = 0.00044, P = 0.00044
Identities = 38/157 (24%), Positives = 79/157 (50%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLE 162
L+A+N+ + T ++++ +FE ++I L + R++G+A++ S +A L +
Sbjct: 399 LLAKNLSFNITEDELKEVFED---AVEIRL-VSQDGRSKGIAYIEFKSEADAEKNLEEKQ 454
Query: 163 SYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA--TFNLFIANLSFEARAKDLREFFISEGW 220
E +GR++ + Y K + + ++ + L ++NLS+ A + L+E F +
Sbjct: 455 GAEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATF 514
Query: 221 DVVSAEVIFHDNPR-RSAGYGFVSFKSKKVAETAISA 256
V NP +S GY F+ F S + A+ A+++
Sbjct: 515 IKVP------QNPHGKSKGYAFIEFASFEDAKEALNS 545
>UNIPROTKB|H7BY16 [details] [associations]
symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC017104 HGNC:HGNC:7667
ChiTaRS:NCL ProteinModelPortal:H7BY16 PRIDE:H7BY16
Ensembl:ENST00000356936 Bgee:H7BY16 Uniprot:H7BY16
Length = 297
Score = 167 (63.8 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 55/194 (28%), Positives = 99/194 (51%)
Query: 73 SATTQDPFVDSSSAAAVNTEQREEEY----SKTRLVAQNVPWTSTHEDIRALFEQHGTVL 128
S + D S+A V T R ++ SKT LV N+ +++T E ++ +FE+ T +
Sbjct: 80 STWSDDSRKTDQSSAYVRTTSRTLQHVLGESKT-LVLSNLSYSATEETLQEVFEK-ATFI 137
Query: 129 DIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQ 188
+ + + K++ G AF+ S ++A ALN+ E EGR +++ +++ P +
Sbjct: 138 KVPQNQNGKSK--GYAFIEFASFEDAKEALNSCNKREIEGRAIRL---ELQGPRGSPNAR 192
Query: 189 PKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKK 248
+P T LF+ LS + + L+E F +G V A ++ S G+GFV F S++
Sbjct: 193 SQPSKT--LFVKGLSEDTTEETLKESF--DG--SVRARIVTDRETGSSKGFGFVDFNSEE 246
Query: 249 VAETAISAFQ-GKV 261
A+ A A + G++
Sbjct: 247 DAKAAKEAMEDGEI 260
>UNIPROTKB|Q5U328 [details] [associations]
symbol:Ncl "Nucleolin, isoform CRA_c" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:3153 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 KO:K11294
GeneTree:ENSGT00550000074656 CTD:4691 HOGENOM:HOG000113885
UniGene:Rn.144561 UniGene:Rn.7735 EMBL:CH474004 OMA:ENAMEIR
EMBL:BC085751 IPI:IPI00231827 RefSeq:NP_036881.2 SMR:Q5U328
STRING:Q5U328 Ensembl:ENSRNOT00000024712 GeneID:25135
KEGG:rno:25135 InParanoid:Q5U328 NextBio:605553
Genevestigator:Q5U328 Uniprot:Q5U328
Length = 714
Score = 174 (66.3 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 51/164 (31%), Positives = 89/164 (54%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAAL 158
SKT LV N+ +++T E ++ +FE+ T + + + H K++ G AF+ S ++A AL
Sbjct: 489 SKT-LVLSNLSYSATEETLQEVFEK-ATFIKVPQNPHGKSK--GYAFIEFASFEDAKEAL 544
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISE 218
N+ E EGRT+++ +++ P + +P T LF+ LS + + L+E F E
Sbjct: 545 NSCNKMEIEGRTIRL---ELQGPRGSPNARSQPSKT--LFVKGLSEDTTEETLKESF--E 597
Query: 219 GWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ-GKV 261
G V A ++ S G+GFV F S++ A+ A A + G++
Sbjct: 598 G--SVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI 639
Score = 118 (46.6 bits), Expect = 0.00044, P = 0.00044
Identities = 38/157 (24%), Positives = 79/157 (50%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLE 162
L+A+N+ + T ++++ +FE ++I L + R++G+A++ S +A L +
Sbjct: 400 LLAKNLSFNITEDELKEVFED---AVEIRL-VSQDGRSKGIAYIEFKSEADAEKNLEEKQ 455
Query: 163 SYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA--TFNLFIANLSFEARAKDLREFFISEGW 220
E +GR++ + Y K + + ++ + L ++NLS+ A + L+E F +
Sbjct: 456 GAEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATF 515
Query: 221 DVVSAEVIFHDNPR-RSAGYGFVSFKSKKVAETAISA 256
V NP +S GY F+ F S + A+ A+++
Sbjct: 516 IKVP------QNPHGKSKGYAFIEFASFEDAKEALNS 546
>UNIPROTKB|B4KX02 [details] [associations]
symbol:shep "Protein alan shepard" species:7230 "Drosophila
mojavensis" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009629 "response
to gravity" evidence=ISS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0009629 EMBL:CH933809 OrthoDB:EOG4C8687 RefSeq:XP_002008147.1
ProteinModelPortal:B4KX02 EnsemblMetazoa:FBtr0162707 GeneID:6582444
KEGG:dmo:Dmoj_GI11982 FlyBase:FBgn0134739 InParanoid:B4KX02
Uniprot:B4KX02
Length = 592
Score = 172 (65.6 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 63/253 (24%), Positives = 107/253 (42%)
Query: 14 SYLYTEPQQQQSHEAPFVSLLQKQQKQHYNYFFPLSSSPFHAYTFPI--TPKKVSPFVFH 71
+Y YT P Q ++ A Y P ++SP + + T +
Sbjct: 139 AYRYTAPLPQPAYAAYTPHTATTPATTTYGQRVPTAASPSNTNSSSSSNTGSQSGTLSTS 198
Query: 72 FSATTQDPFVDSSSAAAVNTEQRE-EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDI 130
S TT + A N Q+ E+ SKT L + + +T +D+ + Q+GT++
Sbjct: 199 LSNTTNTNTTMGPNGTAQNQNQQGGEQLSKTNLYIRGLQQGTTDKDLINMCAQYGTIIST 258
Query: 131 ELSMH-SKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQP 189
+ + + N+ +G FV P A A+ L++ + + KV + + P +Q
Sbjct: 259 KAILDKTTNKCKGYGFVDFEQPAYAEGAVKGLQAKGVQAQMAKVGIWVLHR----PAIQQ 314
Query: 190 KPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKV 249
+ T NL+IANL + DL E +++ VVS ++ D S G GF +S++
Sbjct: 315 EQDPT-NLYIANLPPHFKETDL-EAMLAKFGQVVSTRIL-RDQQMNSKGVGFARMESREK 371
Query: 250 AETAISAFQGKVI 262
E I F G I
Sbjct: 372 CEQIIQMFNGNTI 384
>WB|WBGene00003423 [details] [associations]
symbol:msi-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 EMBL:Z35601 EMBL:AB036738
PIR:T24148 RefSeq:NP_497799.1 UniGene:Cel.19474
ProteinModelPortal:G5EFS2 SMR:G5EFS2 EnsemblMetazoa:R10E9.1.1
EnsemblMetazoa:R10E9.1.2 GeneID:175514 KEGG:cel:CELE_R10E9.1
CTD:175514 WormBase:R10E9.1 OMA:VADKVCE NextBio:888480
Uniprot:G5EFS2
Length = 320
Score = 166 (63.5 bits), Expect = 2.6e-10, P = 2.6e-10
Identities = 55/196 (28%), Positives = 89/196 (45%)
Query: 79 PFVDSSSAAAVNTEQREEEYSKT---RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH 135
P VD A +N + + + ++ + W +T E++R F + G V + +
Sbjct: 20 PPVDGHEEARLNADSDDGSHGSQDPGKMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRD 79
Query: 136 -SKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPP-VQPKPFA 193
+ R RG F+T P LNN E +E +G+ KI K FP Q K
Sbjct: 80 PATKRARGFGFITFVDPSSVDKVLNNRE-HELDGK-------KIDPKVAFPKRTQAKLVT 131
Query: 194 -TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVA-- 250
T +FI LS + +D++++F + G V A ++F +R G+GFV+F S +VA
Sbjct: 132 KTKKVFIGGLSATSTLEDMKQYFETYG-KVEDAMLMFDKATQRHRGFGFVTFDSDEVADK 190
Query: 251 --ETAISAFQGKVIMC 264
E GK++ C
Sbjct: 191 VCEIHFHEINGKMVEC 206
>POMBASE|SPAC328.05 [details] [associations]
symbol:SPAC328.05 "RNA-binding protein involved in export
of mRNAs (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005829
"cytosol" evidence=IDA] [GO:0016973 "poly(A)+ mRNA export from
nucleus" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 PomBase:SPAC328.05
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 GO:GO:0016973
OrthoDB:EOG4F21C2 RefSeq:NP_594207.3 HSSP:Q9D0B0
EnsemblFungi:SPAC328.05.1 GeneID:2542567 NextBio:20803618
Uniprot:Q9P3U1
Length = 464
Score = 141 (54.7 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
Identities = 32/107 (29%), Positives = 59/107 (55%)
Query: 80 FVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR 139
F SS + + ++ ++ E + +L N+P+ +D++ LF Q G+V+ ++ M+ + R
Sbjct: 159 FGSSSVSPSASSNGKDSEPDR-QLFVGNLPYNVRWQDLKDLFRQAGSVIRADIQMNQEGR 217
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK--KKNPF 184
+RG+ V M S EA A+ L + +F GRTL+V + K P+
Sbjct: 218 SRGIGIVVMSSMKEAMHAIQMLHNTDFMGRTLEVRLDRFAHHKSKPY 264
Score = 123 (48.4 bits), Expect = 6.5e-05, P = 6.5e-05
Identities = 49/195 (25%), Positives = 83/195 (42%)
Query: 71 HFSA--TTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVL 128
HF T +DP + + T+Q Y ++ V W +++ Q G VL
Sbjct: 54 HFDGEHTERDPHLGNGQKY---TQQERRVYVGN--LSYQVRWF----ELKEFMGQVGNVL 104
Query: 129 DIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQ 188
+ E+ ++G A + + +EA A+ L + +F GR + + + ++ F
Sbjct: 105 NCEILNLPNGLSKGCAIIEYSTAEEARTAIKTLSNQKFMGRLVYIREDR-EQNARFGSSS 163
Query: 189 PKPFATFN---------LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
P A+ N LF+ NL + R +DL++ F G V+ A++ + R S G
Sbjct: 164 VSPSASSNGKDSEPDRQLFVGNLPYNVRWQDLKDLFRQAG-SVIRADIQMNQEGR-SRGI 221
Query: 240 GFVSFKSKKVAETAI 254
G V S K A AI
Sbjct: 222 GIVVMSSMKEAMHAI 236
Score = 70 (29.7 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
Identities = 19/77 (24%), Positives = 37/77 (48%)
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
+++ NL + ++L + F G V+ A + + R S G+G V F+++ A ++I
Sbjct: 312 IYVGNLPWATSDRNLLDLFTDIG-SVIRARIAYEPTGR-SKGFGVVQFENENDAASSIEK 369
Query: 257 FQGKVIMCLVIALSYLY 273
G + LSY +
Sbjct: 370 LNGYRYGGRPLQLSYAH 386
>UNIPROTKB|F1RKD1 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0040019 "positive regulation of embryonic development"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:CT971483
Ensembl:ENSSSCT00000010816 Uniprot:F1RKD1
Length = 965
Score = 151 (58.2 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 52/191 (27%), Positives = 94/191 (49%)
Query: 82 DSSSAAAVNTEQREEEYSKT----RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK 137
D++SA E+ EEE ++ L +N+ +++T E ++ +F + G V +S K
Sbjct: 712 DAASAKVEEEEEEEEEEEESLPGCTLFIKNLNFSTTEETLKGVFSKVGAVKSCSISK-KK 770
Query: 138 NR-----NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPV-QPKP 191
N+ + G FV P++A AL L+ + +G L+V ++ K P P + K
Sbjct: 771 NKAGALLSMGFGFVEYKKPEQAQKALKQLQGHVVDGHKLEVRISERATK-PAPTATRKKQ 829
Query: 192 FA----TFNLFIANLSFEARAKDLREFFISEGW--DVVSAEVIFHDNPRRSAGYGFVSFK 245
A T + + N+ F+A ++++RE F + G V + + R G+GFV F
Sbjct: 830 VARKQTTSKILVRNIPFQADSREIRELFSTFGELKTVRLPKKMTGTGTHR--GFGFVDFF 887
Query: 246 SKKVAETAISA 256
+K+ A+ A +A
Sbjct: 888 TKQDAKRAFNA 898
Score = 137 (53.3 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 30/91 (32%), Positives = 51/91 (56%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRN-RGLAFVTMGS 150
E+ E+ RL +N+P+TS+ ED+ LF ++G + ++ + S + +G AFVT
Sbjct: 394 EEEEDLADSGRLFVRNLPYTSSEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFVTFMF 453
Query: 151 PDEATAALNNLESYEFEGRTLKVNYAKIKKK 181
P+ A A ++ F+GR L V + IKK+
Sbjct: 454 PEHAVKAYAEVDGQVFQGRMLHVLPSTIKKE 484
Score = 92 (37.4 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
Identities = 22/77 (28%), Positives = 34/77 (44%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
+RL+ +N+P E R LF GT+ D L + R F+ S +EA ALN+
Sbjct: 2 SRLIVKNLPNGMKEERFRQLFTAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQTALNH 61
Query: 161 LESYEFEGRTLKVNYAK 177
+ + V + K
Sbjct: 62 FNKSFIDTSRITVEFCK 78
Score = 83 (34.3 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 25/90 (27%), Positives = 41/90 (45%)
Query: 176 AKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRR 235
AK++++ + + LFI NL+F + L+ F G V S + N
Sbjct: 716 AKVEEEEEEEEEEEESLPGCTLFIKNLNFSTTEETLKGVFSKVG-AVKSCSISKKKNKAG 774
Query: 236 ---SAGYGFVSFKSKKVAETAISAFQGKVI 262
S G+GFV +K + A+ A+ QG V+
Sbjct: 775 ALLSMGFGFVEYKKPEQAQKALKQLQGHVV 804
>UNIPROTKB|F1N0L5 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0040019 "positive regulation of embryonic development"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:DAAA02045406 EMBL:DAAA02045407
EMBL:DAAA02045408 EMBL:DAAA02045409 EMBL:DAAA02045410
EMBL:DAAA02045411 EMBL:DAAA02045412 IPI:IPI00742584
Ensembl:ENSBTAT00000045133 Uniprot:F1N0L5
Length = 920
Score = 140 (54.3 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 31/91 (34%), Positives = 51/91 (56%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRN-RGLAFVTMGS 150
E+ E+ RL +N+P+TS+ ED+ LF ++G V ++ + S + +G AFVT
Sbjct: 354 EEEEDLADSGRLFVRNLPYTSSEEDLEKLFSRYGPVSELHYPIDSLTKKPKGFAFVTFMF 413
Query: 151 PDEATAALNNLESYEFEGRTLKVNYAKIKKK 181
P+ A A ++ F+GR L V + IKK+
Sbjct: 414 PEHAVKAYAEVDGQVFQGRMLHVLPSTIKKE 444
Score = 121 (47.7 bits), Expect = 0.00027, P = 0.00027
Identities = 45/190 (23%), Positives = 88/190 (46%)
Query: 82 DSSSAAAVNTEQREEEYSKT----RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK 137
D+S+ E+ EEE ++ L +N+ + +T E ++ +F + G V +S K
Sbjct: 667 DASAKMEEEEEEEEEEEEESLPGCTLFIKNLNFDTTEETLKGVFSKVGAVKSCSISK-KK 725
Query: 138 NR-----NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQ---- 188
N+ + G FV P++A AL L+ + +G L+V ++ K+ +
Sbjct: 726 NKAGALLSMGFGFVEYRKPEQAQKALKQLQGHVVDGHKLEVRISERATKSALNSGRHKHS 785
Query: 189 PKPFATFNLFIANLSFEARAKDLREFFISEGW--DVVSAEVIFHDNPRRSAGYGFVSFKS 246
P+ +++ F+ +++L+E F + G V + + R G+GFV F +
Sbjct: 786 PRRQTDTKIWVRVCPFQGDSRELKEIFNTFGELKTVRLPKKLTGTGTHR--GFGFVDFLT 843
Query: 247 KKVAETAISA 256
K+ A+ A +A
Sbjct: 844 KQDAKRAFNA 853
Score = 92 (37.4 bits), Expect = 9.2e-05, Sum P(2) = 9.2e-05
Identities = 22/77 (28%), Positives = 34/77 (44%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
+RL+ +N+P E R LF GT+ D L + R F+ S +EA ALN+
Sbjct: 2 SRLIVKNLPNGMKEERFRQLFTAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQTALNH 61
Query: 161 LESYEFEGRTLKVNYAK 177
+ + V + K
Sbjct: 62 FNKSFIDTSRITVEFCK 78
Score = 79 (32.9 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 22/69 (31%), Positives = 34/69 (49%)
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRR---SAGYGFVSFKSKKVAETA 253
LFI NL+F+ + L+ F G V S + N S G+GFV ++ + A+ A
Sbjct: 692 LFIKNLNFDTTEETLKGVFSKVG-AVKSCSISKKKNKAGALLSMGFGFVEYRKPEQAQKA 750
Query: 254 ISAFQGKVI 262
+ QG V+
Sbjct: 751 LKQLQGHVV 759
>UNIPROTKB|P08199 [details] [associations]
symbol:NCL "Nucleolin" species:10036 "Mesocricetus auratus"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 EMBL:M15825
PIR:A27441 PDB:1FJ7 PDB:1FJC PDB:1FJE PDB:1RKJ PDBsum:1FJ7
PDBsum:1FJC PDBsum:1FJE PDBsum:1RKJ ProteinModelPortal:P08199
SMR:P08199 PRIDE:P08199 EvolutionaryTrace:P08199 Uniprot:P08199
Length = 714
Score = 170 (64.9 bits), Expect = 4.4e-10, P = 4.4e-10
Identities = 50/164 (30%), Positives = 90/164 (54%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAAL 158
SKT LV N+ +++T E ++ +FE+ T I++ + + +++G AF+ S ++A AL
Sbjct: 485 SKT-LVLSNLSYSATEETLQEVFEK-ATF--IKVPQNQQGKSKGYAFIEFASFEDAKEAL 540
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISE 218
N+ E EGRT+++ +++ P + +P T LF+ LS + + L+E F E
Sbjct: 541 NSCNKMEIEGRTIRL---ELQGPRGSPNARSQPSKT--LFVKGLSEDTTEETLKESF--E 593
Query: 219 GWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ-GKV 261
G V A ++ S G+GFV F S++ A+ A A + G++
Sbjct: 594 G--SVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI 635
>CGD|CAL0004726 [details] [associations]
symbol:orf19.7368 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0043488 "regulation of mRNA
stability" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0004726 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000066 eggNOG:COG0724 HOGENOM:HOG000206748 KO:K13201
RefSeq:XP_716609.1 ProteinModelPortal:Q5A4G6 STRING:Q5A4G6
GeneID:3641737 KEGG:cal:CaO19.7368 Uniprot:Q5A4G6
Length = 510
Score = 168 (64.2 bits), Expect = 4.5e-10, P = 4.5e-10
Identities = 66/246 (26%), Positives = 107/246 (43%)
Query: 19 EPQQQQSHEAPFVSLLQKQQKQHYNYFFPLSSSPFHAYTFPITPKKVSPFVFHFSATTQD 78
+PQ+QQS E Q+QQ+Q P + + + P ++QD
Sbjct: 8 QPQEQQSQEQQQQEQQQQQQQQQQQEHQPEQQQSTESSENE-SQQAQQP-------SSQD 59
Query: 79 PFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKN 138
D A + ++ E S L N+P +++ E I+ LF G + ++ KN
Sbjct: 60 ---DEKQVNAASAKEGGREVSNKILYVGNLPKSASEETIQELFSVGGNPVKTIKILNDKN 116
Query: 139 R-NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKK---NPFPPVQPKPFAT 194
+ AF+ + + A ALN L + +KVN+A NP +P
Sbjct: 117 KAGFNYAFIEYDTNEVADMALNTLNGRLVDDVEIKVNWAFQSAAIAGNPNNTEEP----L 172
Query: 195 FNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAI 254
FN+F+ +LS E + LR F S+ + A V++ RS GYGFV+F ++ AE A+
Sbjct: 173 FNIFVGDLSPEVNDEGLRNAF-SKFESLKQAHVMWDMQTSRSRGYGFVTFGNQSDAELAL 231
Query: 255 SAFQGK 260
G+
Sbjct: 232 QTMNGE 237
>FB|FBgn0004838 [details] [associations]
symbol:Hrb27C "Heterogeneous nuclear ribonucleoprotein at
27C" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0005730
"nucleolus" evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0048027 "mRNA 5'-UTR binding" evidence=NAS;TAS] [GO:0007319
"negative regulation of oskar mRNA translation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA;TAS] [GO:0007317
"regulation of pole plasm oskar mRNA localization" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0045451 "pole
plasm oskar mRNA localization" evidence=IMP] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IMP]
[GO:0007298 "border follicle cell migration" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=IDA]
[GO:0043234 "protein complex" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0007411 "axon guidance" evidence=IMP]
[GO:0046331 "lateral inhibition" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0007411 GO:GO:0043234 GO:GO:0005654
EMBL:AE014134 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007298
GO:GO:0048027 GO:GO:0003730 GO:GO:0003697 GO:GO:0030529
GO:GO:0046331 GO:GO:0045727 GO:GO:0048024 GO:GO:0007319
eggNOG:COG0724 GO:GO:0045451 KO:K14411 GeneTree:ENSGT00700000104255
EMBL:X62639 EMBL:DQ062784 EMBL:AY069699 EMBL:AY128430 EMBL:S51720
PIR:D41732 RefSeq:NP_001162897.1 RefSeq:NP_001162898.1
RefSeq:NP_001245917.1 RefSeq:NP_001245918.1 RefSeq:NP_001245919.1
RefSeq:NP_476869.1 RefSeq:NP_723228.1 RefSeq:NP_723229.1
UniGene:Dm.1997 ProteinModelPortal:P48809 SMR:P48809 IntAct:P48809
MINT:MINT-939547 STRING:P48809 PaxDb:P48809
EnsemblMetazoa:FBtr0079346 EnsemblMetazoa:FBtr0079347
EnsemblMetazoa:FBtr0079348 EnsemblMetazoa:FBtr0301403
EnsemblMetazoa:FBtr0301404 EnsemblMetazoa:FBtr0307030
EnsemblMetazoa:FBtr0307031 EnsemblMetazoa:FBtr0307032 GeneID:33968
KEGG:dme:Dmel_CG10377 CTD:33968 FlyBase:FBgn0004838
InParanoid:P48809 OMA:GGYDMYN OrthoDB:EOG4CJSZQ PhylomeDB:P48809
ChiTaRS:Hrb27C GenomeRNAi:33968 NextBio:786189 Bgee:P48809
GermOnline:CG10377 Uniprot:P48809
Length = 421
Score = 166 (63.5 bits), Expect = 5.3e-10, P = 5.3e-10
Identities = 42/157 (26%), Positives = 71/157 (45%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSPDEA 154
EE + +L + W +T E++ F + G ++D + + + R+RG FVT P
Sbjct: 2 EEDERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNV 61
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
L N + +GRT+ K NP +PK + +F+ L DLR F
Sbjct: 62 NHVLQN-GPHTLDGRTIDP-----KPCNPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTF 115
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAE 251
F G V +++ ++S G+GF+SF+ + E
Sbjct: 116 FNRYG-KVTEVVIMYDQEKKKSRGFGFLSFEEESSVE 151
>SGD|S000003391 [details] [associations]
symbol:NSR1 "Nucleolar protein that binds nuclear
localization sequences" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA;TAS]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006950 "response to stress"
evidence=IEA] [GO:0000028 "ribosomal small subunit assembly"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000003391 GO:GO:0005739
GO:GO:0005730 GO:GO:0006950 EMBL:BK006941 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697 GO:GO:0000028
GO:GO:0006364 eggNOG:COG0724 EMBL:X85807 KO:K11294 OMA:VITDRES
OrthoDB:EOG422DTZ GeneTree:ENSGT00550000074656 EMBL:X57185
EMBL:Z72944 EMBL:Z72946 PIR:A39205 RefSeq:NP_011675.1
ProteinModelPortal:P27476 SMR:P27476 DIP:DIP-5537N IntAct:P27476
MINT:MINT-543806 STRING:P27476 PaxDb:P27476 PeptideAtlas:P27476
EnsemblFungi:YGR159C GeneID:853064 KEGG:sce:YGR159C CYGD:YGR159c
HOGENOM:HOG000113864 NextBio:973004 Genevestigator:P27476
GermOnline:YGR159C Uniprot:P27476
Length = 414
Score = 162 (62.1 bits), Expect = 5.5e-10, Sum P(2) = 5.5e-10
Identities = 47/181 (25%), Positives = 82/181 (45%)
Query: 90 NTEQREEEYSKTRLV-AQNVPWTSTHEDIRALFEQHGTVLDIELSMH-SKNRNRGLAFVT 147
N +Q+ EE + + + W+ E ++ FE G V+ + +R+RG +V
Sbjct: 156 NKKQKNEETEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVD 215
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYAKIK------KKNPFPPVQPKPFATFNLFIAN 201
+ A A+ ++ E +GR + + + K + F +P T LF+ N
Sbjct: 216 FENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDT--LFLGN 273
Query: 202 LSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKV 261
LSF A + E F G +VVS + H + G+G+V F + + A+ A+ A QG+
Sbjct: 274 LSFNADRDAIFELFAKHG-EVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEY 332
Query: 262 I 262
I
Sbjct: 333 I 333
Score = 40 (19.1 bits), Expect = 5.5e-10, Sum P(2) = 5.5e-10
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 75 TTQDPFVDSSSAAAVNTEQREEEYSK 100
T ++ DSSS+++ ++ EEE K
Sbjct: 80 TKKEESKDSSSSSSDSSSDEEEEEEK 105
Score = 38 (18.4 bits), Expect = 8.9e-10, Sum P(2) = 8.9e-10
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 82 DSSSAAAVNTE-QREEEYSKTR 102
DSSS+++ ++E ++EE K R
Sbjct: 120 DSSSSSSSDSESEKEESNDKKR 141
>SGD|S000004961 [details] [associations]
symbol:PUB1 "Poly (A)+ RNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003729 "mRNA binding" evidence=IMP;IDA] [GO:0043488
"regulation of mRNA stability" evidence=IMP] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0034063
"stress granule assembly" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000004961 GO:GO:0005634 GO:GO:0008266 GO:GO:0000184
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 EMBL:BK006947
GO:GO:0043488 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
EMBL:L13725 EMBL:L20767 EMBL:L01797 EMBL:Z71292 PIR:S62928
RefSeq:NP_014382.1 PDB:2LA4 PDB:3MD1 PDB:3MD3 PDBsum:2LA4
PDBsum:3MD1 PDBsum:3MD3 ProteinModelPortal:P32588 SMR:P32588
DIP:DIP-5480N IntAct:P32588 MINT:MINT-499485 STRING:P32588
PaxDb:P32588 PeptideAtlas:P32588 EnsemblFungi:YNL016W GeneID:855716
KEGG:sce:YNL016W GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 OMA:PAYNTTV OrthoDB:EOG4SN4XJ EvolutionaryTrace:P32588
NextBio:980072 Genevestigator:P32588 GermOnline:YNL016W
Uniprot:P32588
Length = 453
Score = 166 (63.5 bits), Expect = 6.2e-10, P = 6.2e-10
Identities = 49/176 (27%), Positives = 78/176 (44%)
Query: 85 SAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLA 144
S N E S L N+ T + ++ F+ G + +I++ + N+N A
Sbjct: 59 SVVPANAITGGRETSDRVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYA 118
Query: 145 FVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSF 204
FV +A AL L + E +K+N+A F Q TFNLF+ +L+
Sbjct: 119 FVEYHQSHDANIALQTLNGKQIENNIVKINWA-------FQSQQSSSDDTFNLFVGDLNV 171
Query: 205 EARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
+ LR F + +S V++ S GYGFVSF S+ A+ A+ + QG+
Sbjct: 172 NVDDETLRNAF-KDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQ 226
>UNIPROTKB|B3M3R5 [details] [associations]
symbol:shep "Protein alan shepard" species:7217 "Drosophila
ananassae" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009629 "response
to gravity" evidence=ISS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0009629 EMBL:CH902618 eggNOG:NOG320163 RefSeq:XP_001957552.1
ProteinModelPortal:B3M3R5 GeneID:6493340 KEGG:dan:Dana_GF10470
FlyBase:FBgn0087511 InParanoid:B3M3R5 OrthoDB:EOG4C8687
Uniprot:B3M3R5
Length = 597
Score = 167 (63.8 bits), Expect = 7.7e-10, P = 7.7e-10
Identities = 64/252 (25%), Positives = 104/252 (41%)
Query: 14 SYLYTEPQQQQSHEAPFVSLLQKQQKQHYNYFFPLSSSPFHAYTFPI--TPKKVSPFVFH 71
+Y YT P Q ++ A Y P ++SP + + T +
Sbjct: 146 AYRYTAPLPQPAYAAYTPHTATTPATTTYGQRVPTAASPSNTNSSSSSNTGSQSGTLSTS 205
Query: 72 FSATTQDPFVDSSSAAAVNTEQRE-EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDI 130
S TT + A N Q+ E+ SKT L + + +T +D+ + Q+GT++
Sbjct: 206 LSNTTNTNTNMGPNGTAQNQNQQGGEQLSKTNLYIRGLQQGTTDKDLVNMCAQYGTIIST 265
Query: 131 ELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPK 190
+ + K N+ FV P A A+ L+ + + KV + + P +Q +
Sbjct: 266 KAIL-DKTTNKCYGFVDFEQPAFAECAVKGLQGKGVQAQMAKVGIWVLHR----PAIQQE 320
Query: 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVA 250
T NL+IANL + DL E +S+ VVS ++ D S G GF +S++
Sbjct: 321 QDPT-NLYIANLPPHYKETDL-EAMLSKYGQVVSTRIL-RDQQMNSKGVGFARMESREKC 377
Query: 251 ETAISAFQGKVI 262
E I F G I
Sbjct: 378 EQIIQMFNGNTI 389
>TAIR|locus:4515103541 [details] [associations]
symbol:AT5G08695 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OMA:YLEWAPR IPI:IPI00539175 RefSeq:NP_001119193.1 UniGene:At.68994
ProteinModelPortal:F4KCG5 SMR:F4KCG5 EnsemblPlants:AT5G08695.1
GeneID:6241377 KEGG:ath:AT5G08695 Uniprot:F4KCG5
Length = 690
Score = 127 (49.8 bits), Expect = 9.2e-10, Sum P(2) = 9.2e-10
Identities = 28/97 (28%), Positives = 50/97 (51%)
Query: 82 DSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRN- 140
D A V + ++ RL +P+++T E++ F + G + ++ L + R+
Sbjct: 208 DDGHAMEVEADGSDDVLDAGRLFVHGLPYSTTEEELMEHFSKFGDISEVHLVLDKDTRSC 267
Query: 141 RGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177
RG+AFV P+ A A++ L+ F+GRTL + AK
Sbjct: 268 RGMAFVLYLIPESAKMAMDKLDKLPFQGRTLHILPAK 304
Score = 118 (46.6 bits), Expect = 0.00042, P = 0.00042
Identities = 38/154 (24%), Positives = 71/154 (46%)
Query: 81 VDSSSAAAVNTEQREEEYSKTR----LVAQNVPWTSTHEDIRALFE---QHGTVLDIELS 133
V+ + A VN +Q+ YS L +N+ + +T E ++ + G +L ++
Sbjct: 511 VEENDARRVNLDQQVGIYSDITESNVLHVKNLSFKTTDEGLKKHLTGVVKQGKILSVKQI 570
Query: 134 MH--SKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKP 191
+ ++ R+ G FV S + AT+ +L +G +L +N+++ K+ K
Sbjct: 571 IRDWTRRRSSGYGFVEFDSVETATSVYRDLPGNVLDGHSLILNFSENKRSETVGEGSDKV 630
Query: 192 FATFNLFIANLSFEARAKDLREFF-----ISEGW 220
L + N++FEA K+LR+ F I E W
Sbjct: 631 TKLAKLHVKNVAFEATKKELRQLFSPFGQIQESW 664
Score = 91 (37.1 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 17/58 (29%), Positives = 33/58 (56%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAAL 158
+R++ +NVP T + +R +F + G + D++L S R+R A++ S +A A+
Sbjct: 4 SRIIVKNVPKYVTEDQLRGIFSEKGEITDVKLKRLSDGRSRQFAYIGFRSEQKAQDAI 61
Score = 86 (35.3 bits), Expect = 9.2e-10, Sum P(2) = 9.2e-10
Identities = 23/70 (32%), Positives = 37/70 (52%)
Query: 197 LFIANLSFEARAKDLREFF---ISEGWDVVSAEVIFHD-NPRRSAGYGFVSFKSKKVAET 252
L + NLSF+ + L++ + +G ++S + I D RRS+GYGFV F S + A +
Sbjct: 537 LHVKNLSFKTTDEGLKKHLTGVVKQG-KILSVKQIIRDWTRRRSSGYGFVEFDSVETATS 595
Query: 253 AISAFQGKVI 262
G V+
Sbjct: 596 VYRDLPGNVL 605
>UNIPROTKB|Q98SP8 [details] [associations]
symbol:epabp-a "Embryonic polyadenylate-binding protein A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043009 "chordate
embryonic development" evidence=IEP] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0043009 GO:GO:0060212 GO:GO:0008143
HOVERGEN:HBG002295 EMBL:AF338225 EMBL:BC080020
RefSeq:NP_001082094.1 UniGene:Xl.777 ProteinModelPortal:Q98SP8
SMR:Q98SP8 PRIDE:Q98SP8 GeneID:398221 KEGG:xla:398221 CTD:398221
Xenbase:XB-GENE-5742498 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 Uniprot:Q98SP8
Length = 629
Score = 166 (63.5 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 54/194 (27%), Positives = 92/194 (47%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHED-----IRALFEQHGTVLDIELSMHSKNRNRGLAFVT 147
+RE EY + NV + ED +R +F G L +++ M R+RG FV
Sbjct: 178 ERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVN 237
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYA--KIKK----KNPFPPVQPKPFATF---NLF 198
G+ +EA A++ + E GR + V A +I++ K F ++ + + NL+
Sbjct: 238 YGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLY 297
Query: 199 IANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ 258
+ NL LR+ F+ G + SA+V+ S G+GFV F S + A A++
Sbjct: 298 VKNLDDGIDDDRLRKEFLPYG-TITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMN 354
Query: 259 GKVIMC--LVIALS 270
G+++ L +AL+
Sbjct: 355 GRIVSTKPLYVALA 368
Score = 124 (48.7 bits), Expect = 7.7e-05, P = 7.7e-05
Identities = 36/142 (25%), Positives = 69/142 (48%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + ++ +RG FV + + A A+ + R + V + K ++
Sbjct: 119 FSAFGNILSCKV-VCDEHGSRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKSRR 177
Query: 181 KNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYG 240
+ K N++I N + K LRE F + G + +S +V+ D+ R S G+G
Sbjct: 178 ERELE-YGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFG-NTLSVKVMMDDSGR-SRGFG 234
Query: 241 FVSFKSKKVAETAISAFQGKVI 262
FV++ + + A+ A+S GK +
Sbjct: 235 FVNYGNHEEAQKAVSEMNGKEV 256
>UNIPROTKB|F1SMV6 [details] [associations]
symbol:LOC100737174 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:CU856676
Ensembl:ENSSSCT00000017723 Uniprot:F1SMV6
Length = 365
Score = 162 (62.1 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 48/164 (29%), Positives = 88/164 (53%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAAL 158
SKT LV N+ +++T E ++ +FE+ T + + + + K++ G AF+ S ++A AL
Sbjct: 139 SKT-LVLSNLAYSATEETLQEVFEK-ATFIKVPQNQNGKSK--GYAFIEFASFEDAKEAL 194
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISE 218
N+ E EGR +++ +++ P + +P T LF+ LS E + L+E F +
Sbjct: 195 NSCNKREIEGRAIRL---ELQGPRGSPNARSQPSKT--LFVKGLSEETTEETLKESF--D 247
Query: 219 GWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ-GKV 261
G + A ++ S G+GFV F S++ A+ A A + G++
Sbjct: 248 G--SIRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI 289
Score = 126 (49.4 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 39/169 (23%), Positives = 92/169 (54%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKN-RNRGLAFVTMGS 150
+ +++ ++T L+A+N+P+ T ++++ +FE +E+ + SK+ +++G+A++ +
Sbjct: 39 DSKKDRDART-LLAKNLPYKVTQDELKEVFEDA-----VEIRLVSKDGKSKGIAYIEFKT 92
Query: 151 PDEATAALNNLESYEFEGRTLKVNYAKIKKKNP-FPPVQPKPFA--TFNLFIANLSFEAR 207
+A L + E +GR++ + Y K +N F + ++ + L ++NL++ A
Sbjct: 93 EADAEKTLEEKQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTWSGESKTLVLSNLAYSAT 152
Query: 208 AKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
+ L+E F + +V + N + S GY F+ F S + A+ A+++
Sbjct: 153 EETLQEVFEKATF----IKVPQNQNGK-SKGYAFIEFASFEDAKEALNS 196
>UNIPROTKB|Q48A10 [details] [associations]
symbol:CPS_0338 "RNA-binding protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
eggNOG:COG0724 RefSeq:YP_267104.1 ProteinModelPortal:Q48A10
STRING:Q48A10 GeneID:3519770 KEGG:cps:CPS_0338 PATRIC:21464063
HOGENOM:HOG000269562 BioCyc:CPSY167879:GI48-441-MONOMER
Uniprot:Q48A10
Length = 160
Score = 143 (55.4 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 41/114 (35%), Positives = 62/114 (54%)
Query: 68 FVFHFSAT--TQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHG 125
FV F A T P +++S+ + NT +E+ +T V N+P+ + +R LF +HG
Sbjct: 38 FVSAFLAPLLTGSPSTNTASSTSSNTIASDEDV-RTLYVG-NLPYRANETSVRELFSEHG 95
Query: 126 TVLDIELSMHSKN--RNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177
+V + L M K+ + RG FV M S D+ A++ L EF+ RTLKV AK
Sbjct: 96 SVHSVRL-MKDKHTGKRRGFGFVEMAS-DDLDKAISALNDTEFQQRTLKVREAK 147
>TIGR_CMR|CPS_0338 [details] [associations]
symbol:CPS_0338 "RNA-binding protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CP000083 GenomeReviews:CP000083_GR eggNOG:COG0724
RefSeq:YP_267104.1 ProteinModelPortal:Q48A10 STRING:Q48A10
GeneID:3519770 KEGG:cps:CPS_0338 PATRIC:21464063
HOGENOM:HOG000269562 BioCyc:CPSY167879:GI48-441-MONOMER
Uniprot:Q48A10
Length = 160
Score = 143 (55.4 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 41/114 (35%), Positives = 62/114 (54%)
Query: 68 FVFHFSAT--TQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHG 125
FV F A T P +++S+ + NT +E+ +T V N+P+ + +R LF +HG
Sbjct: 38 FVSAFLAPLLTGSPSTNTASSTSSNTIASDEDV-RTLYVG-NLPYRANETSVRELFSEHG 95
Query: 126 TVLDIELSMHSKN--RNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177
+V + L M K+ + RG FV M S D+ A++ L EF+ RTLKV AK
Sbjct: 96 SVHSVRL-MKDKHTGKRRGFGFVEMAS-DDLDKAISALNDTEFQQRTLKVREAK 147
>ZFIN|ZDB-GENE-990415-246 [details] [associations]
symbol:elavl4 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 4 (Hu antigen D)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-246 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR931780 EMBL:CU467068
EMBL:CU929301 IPI:IPI00920316 ProteinModelPortal:F1R133
Ensembl:ENSDART00000134787 ArrayExpress:F1R133 Bgee:F1R133
Uniprot:F1R133
Length = 408
Score = 162 (62.1 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 48/189 (25%), Positives = 81/189 (42%)
Query: 73 SATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIEL 132
SAT P +S S + + SKT L+ +P T E+ R+LF G + +L
Sbjct: 60 SATANGPSSNSRSCPSPMQTGGSNDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKL 119
Query: 133 SMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKP 191
++ G FV P +A A+N L + +T+KV+YA+ +
Sbjct: 120 VRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS--------- 170
Query: 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAE 251
NL+++ L K+L + F G ++++ ++ S G GF+ F + AE
Sbjct: 171 IRDANLYVSGLPKTMTQKELEQLFSQYG-RIITSRILVDQVTGGSRGVGFIRFDKRIEAE 229
Query: 252 TAISAFQGK 260
AI G+
Sbjct: 230 EAIKGLNGQ 238
>ZFIN|ZDB-GENE-040426-960 [details] [associations]
symbol:rbm28 "RNA binding motif protein 28"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-960 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOGENOM:HOG000124666 HOVERGEN:HBG073213 EMBL:BX901876
IPI:IPI00499330 UniGene:Dr.78227 ProteinModelPortal:Q1LV83
SMR:Q1LV83 STRING:Q1LV83 ArrayExpress:Q1LV83 Uniprot:Q1LV83
Length = 865
Score = 116 (45.9 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 24/82 (29%), Positives = 45/82 (54%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALN 159
K+RL+ +N+ + +D++ +F + GTVL+ ++ + + RG AFV EA AL
Sbjct: 235 KSRLIIRNLSFKCEEDDLKQIFSEFGTVLEAKIPLKPDGKKRGFAFVLFKRMPEAGKALT 294
Query: 160 NLESYEFEGRTLKVNYAKIKKK 181
+ + + R + V++A K K
Sbjct: 295 AMNGKKIKDRQVAVDWAIAKDK 316
Score = 98 (39.6 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 27/78 (34%), Positives = 40/78 (51%)
Query: 179 KKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAG 238
KK+NP P T +FI NLSF++ + L E + G ++ V+ + + S G
Sbjct: 426 KKRNPLPS-DVNEGRT--IFIRNLSFDSEEEGLEEVLLQFG-ELSYVRVVMNPDTGVSKG 481
Query: 239 YGFVSFKSKKVAETAISA 256
F FKSK+ AE I+A
Sbjct: 482 CAFAQFKSKEAAEKCIAA 499
Score = 75 (31.5 bits), Expect = 4.4e-05, Sum P(2) = 4.4e-05
Identities = 19/77 (24%), Positives = 39/77 (50%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLE 162
L + +P T+++E + +F + G + + + + + RG +VT D+A AL ++
Sbjct: 6 LFVRRLPETASNEHLAEIFSEIGPLKNCFVVCDKEKKCRGFGYVTFSMEDDAQRALKEVK 65
Query: 163 SYEFEGRTLKVNYAKIK 179
Y+ + + V AK K
Sbjct: 66 LYD--DQKIFVTVAKKK 80
Score = 43 (20.2 bits), Expect = 0.00075, Sum P(2) = 0.00075
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 235 RSAGYGFVSFKSKKVAETAI 254
+S GYGFV F+ + A A+
Sbjct: 641 QSLGYGFVEFQEHEHAIQAL 660
>UNIPROTKB|D4AC21 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00365233
ProteinModelPortal:D4AC21 Ensembl:ENSRNOT00000021032
ArrayExpress:D4AC21 Uniprot:D4AC21
Length = 588
Score = 163 (62.4 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 43/157 (27%), Positives = 80/157 (50%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E++R LF Q G L +++ +++G FV+ ++A A+ + E G+++ V
Sbjct: 134 ENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVG 193
Query: 175 YA--KIKK----KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A K+++ K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 194 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 252
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
+V+ D RS G+GFV F S + A A++ G+++
Sbjct: 253 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIV 287
Score = 121 (47.7 bits), Expect = 0.00015, P = 0.00015
Identities = 38/141 (26%), Positives = 66/141 (46%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N ++G AFV + + A A+ + R + V K +K
Sbjct: 48 FSAFGNILSCKV-VCDENGSKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRK 106
Query: 181 KNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ + K F N++I N E ++LRE F G +S +V+ D +S G+
Sbjct: 107 EREAELGAKAKEFT--NVYIKNFGEEVDDENLRELFSQFG-KTLSVKVM-RDCSGKSKGF 162
Query: 240 GFVSFKSKKVAETAISAFQGK 260
GFVS++ + A A+ GK
Sbjct: 163 GFVSYEKHEDANKAVEEMNGK 183
>UNIPROTKB|F1P1R2 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019
GeneTree:ENSGT00700000104575 EMBL:AADN02050416 IPI:IPI00822335
Ensembl:ENSGALT00000013489 Uniprot:F1P1R2
Length = 621
Score = 134 (52.2 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 28/91 (30%), Positives = 53/91 (58%)
Query: 92 EQREEEYSKT-RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRN-RGLAFVTMG 149
++ EE+ S++ RL +N+P+TST ED+ +F ++G + +I + + +G AF+T
Sbjct: 68 DEEEEDLSESGRLFVRNLPFTSTEEDLEKIFSKYGPLSEIHFPIDRLTKKPKGFAFITYM 127
Query: 150 SPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
P+ A A ++ F+GR + + + IKK
Sbjct: 128 IPEHAVKAYAEMDGQVFQGRMMHLLPSTIKK 158
Score = 120 (47.3 bits), Expect = 0.00022, P = 0.00022
Identities = 46/182 (25%), Positives = 81/182 (44%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR----NRGLAFVT 147
E EE L +N+ +T+T ++ F + G V +S + G FV
Sbjct: 384 EDEEESIPGCTLFIKNLNFTTTEGTLKETFSKVGAVKSCTISKKKDKAGTLLSMGFGFVE 443
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQP-------KPFATFNLFIA 200
P+ A AL L+ +G L+V KI ++ P V+ K T + +
Sbjct: 444 YKKPESAQKALRRLQGCIVDGHKLEV---KISERAVRPAVKSSRKKQTVKKQKTSKILVR 500
Query: 201 NLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAG------YGFVSFKSKKVAETAI 254
N+ F+A +++RE F + G ++ + + P++ AG +GFV F +K+ A+ A
Sbjct: 501 NIPFQATVREIRELFSTFG-ELKTVRL-----PKKMAGTGSHRGFGFVDFLTKQDAKKAF 554
Query: 255 SA 256
+A
Sbjct: 555 NA 556
Score = 73 (30.8 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 22/70 (31%), Positives = 33/70 (47%)
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRR----SAGYGFVSFKSKKVAET 252
LFI NL+F L+E F G V + I + S G+GFV +K + A+
Sbjct: 395 LFIKNLNFTTTEGTLKETFSKVG--AVKSCTISKKKDKAGTLLSMGFGFVEYKKPESAQK 452
Query: 253 AISAFQGKVI 262
A+ QG ++
Sbjct: 453 ALRRLQGCIV 462
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 163 (62.4 bits), Expect = 2.6e-09, P = 2.6e-09
Identities = 43/157 (27%), Positives = 80/157 (50%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E++R LF Q G L +++ +++G FV+ ++A A+ + E G+++ V
Sbjct: 205 ENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVG 264
Query: 175 YA--KIKK----KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A K+++ K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
+V+ D RS G+GFV F S + A A++ G+++
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 121 (47.7 bits), Expect = 0.00017, P = 0.00017
Identities = 38/141 (26%), Positives = 66/141 (46%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N ++G AFV + + A A+ + R + V K +K
Sbjct: 119 FSAFGNILSCKV-VCDENGSKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 181 KNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ + K F N++I N E ++LRE F G +S +V+ D +S G+
Sbjct: 178 EREAELGAKAKEFT--NVYIKNFGEEVDDENLRELFSQFG-KTLSVKVM-RDCSGKSKGF 233
Query: 240 GFVSFKSKKVAETAISAFQGK 260
GFVS++ + A A+ GK
Sbjct: 234 GFVSYEKHEDANKAVEEMNGK 254
>UNIPROTKB|D3K5N7 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1" species:9823 "Sus scrofa" [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727
GO:GO:0070935 CTD:1994 KO:K13088 OrthoDB:EOG4Z8XWZ
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:CU929699 EMBL:GU373715 RefSeq:NP_001182263.1 UniGene:Ssc.4516
ProteinModelPortal:D3K5N7 Ensembl:ENSSSCT00000014844
GeneID:100337681 KEGG:ssc:100337681 Uniprot:D3K5N7
Length = 326
Score = 158 (60.7 bits), Expect = 2.6e-09, P = 2.6e-09
Identities = 44/169 (26%), Positives = 76/169 (44%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGS 150
E ++ +T L+ +P T E++R+LF G + +L + G FV +
Sbjct: 11 EDCRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHSLGYGFVNYVT 70
Query: 151 PDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKD 210
+A A+N L + +T+KV+YA+ P V NL+I+ L KD
Sbjct: 71 AKDAERAINTLNGLRLQSKTIKVSYAR-----PSSEV----IKDANLYISGLPRTMTQKD 121
Query: 211 LREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ + F G ++++ V+ S G F+ F + AE AI++F G
Sbjct: 122 VEDMFSPFG-RIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 163 (62.4 bits), Expect = 2.7e-09, P = 2.7e-09
Identities = 43/157 (27%), Positives = 80/157 (50%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E++R LF Q G L +++ +++G FV+ ++A A+ + E G+++ V
Sbjct: 205 ENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVG 264
Query: 175 YA--KIKK----KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A K+++ K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
+V+ D RS G+GFV F S + A A++ G+++
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 121 (47.7 bits), Expect = 0.00018, P = 0.00018
Identities = 38/141 (26%), Positives = 66/141 (46%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N ++G AFV + + A A+ + R + V K +K
Sbjct: 119 FSAFGNILSCKV-VCDENGSKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 181 KNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ + K F N++I N E ++LRE F G +S +V+ D +S G+
Sbjct: 178 EREAELGAKAKEFT--NVYIKNFGEEVDDENLRELFSQFG-KTLSVKVM-RDCSGKSKGF 233
Query: 240 GFVSFKSKKVAETAISAFQGK 260
GFVS++ + A A+ GK
Sbjct: 234 GFVSYEKHEDANKAVEEMNGK 254
>UNIPROTKB|Q3ZCE2 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:9913 "Bos taurus"
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0045727 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064
OMA:RFGGPLH EMBL:DAAA02019508 EMBL:DAAA02019509 EMBL:BC102495
IPI:IPI00703347 RefSeq:NP_001069922.1 UniGene:Bt.49576 SMR:Q3ZCE2
STRING:Q3ZCE2 Ensembl:ENSBTAT00000000805 GeneID:617316
KEGG:bta:617316 InParanoid:Q3ZCE2 NextBio:20900599 Uniprot:Q3ZCE2
Length = 326
Score = 157 (60.3 bits), Expect = 3.5e-09, P = 3.5e-09
Identities = 44/169 (26%), Positives = 76/169 (44%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGS 150
E ++ +T L+ +P T +++R+LF G V +L + G FV +
Sbjct: 11 EDCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVT 70
Query: 151 PDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKD 210
+A A+N L + +T+KV+YA+ P V NL+I+ L KD
Sbjct: 71 AKDAERAINTLNGLRLQSKTIKVSYAR-----PSSEV----IKDANLYISGLPRNMTQKD 121
Query: 211 LREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ + F G ++++ V+ S G F+ F + AE AI++F G
Sbjct: 122 VEDMFSRFG-RIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
>UNIPROTKB|I3LRH2 [details] [associations]
symbol:LOC100737210 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
GeneTree:ENSGT00550000074656 OMA:RLEYSQS RefSeq:XP_003133770.2
Ensembl:ENSSSCT00000032422 GeneID:100519984 KEGG:ssc:100519984
Uniprot:I3LRH2
Length = 724
Score = 162 (62.1 bits), Expect = 4.1e-09, P = 4.1e-09
Identities = 48/164 (29%), Positives = 88/164 (53%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAAL 158
SKT LV N+ +++T E ++ +FE+ T + + + + K++ G AF+ S ++A AL
Sbjct: 498 SKT-LVLSNLAYSATEETLQEVFEK-ATFIKVPQNQNGKSK--GYAFIEFASFEDAKEAL 553
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISE 218
N+ E EGR +++ +++ P + +P T LF+ LS E + L+E F +
Sbjct: 554 NSCNKREIEGRAIRL---ELQGPRGSPNARSQPSKT--LFVKGLSEETTEETLKESF--D 606
Query: 219 GWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ-GKV 261
G + A ++ S G+GFV F S++ A+ A A + G++
Sbjct: 607 G--SIRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI 648
Score = 126 (49.4 bits), Expect = 5.6e-05, P = 5.6e-05
Identities = 39/169 (23%), Positives = 92/169 (54%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKN-RNRGLAFVTMGS 150
+ +++ ++T L+A+N+P+ T ++++ +FE +E+ + SK+ +++G+A++ +
Sbjct: 398 DSKKDRDART-LLAKNLPYKVTQDELKEVFEDA-----VEIRLVSKDGKSKGIAYIEFKT 451
Query: 151 PDEATAALNNLESYEFEGRTLKVNYAKIKKKNP-FPPVQPKPFA--TFNLFIANLSFEAR 207
+A L + E +GR++ + Y K +N F + ++ + L ++NL++ A
Sbjct: 452 EADAEKTLEEKQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTWSGESKTLVLSNLAYSAT 511
Query: 208 AKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
+ L+E F + +V + N + S GY F+ F S + A+ A+++
Sbjct: 512 EETLQEVFEKATF----IKVPQNQNGK-SKGYAFIEFASFEDAKEALNS 555
>UNIPROTKB|Q6DEY7 [details] [associations]
symbol:epabp "Embryonic polyadenylate-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0031370 "eukaryotic initiation factor 4G binding"
evidence=ISS] [GO:0043009 "chordate embryonic development"
evidence=ISS] [GO:0043621 "protein self-association" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0043009
eggNOG:COG0724 GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC076956 RefSeq:NP_001005062.1 UniGene:Str.8393
ProteinModelPortal:Q6DEY7 SMR:Q6DEY7 STRING:Q6DEY7 PRIDE:Q6DEY7
GeneID:448615 KEGG:xtr:448615 CTD:80336 Xenbase:XB-GENE-5742459
HOGENOM:HOG000217922 InParanoid:Q6DEY7 OrthoDB:EOG4K6G3V
Uniprot:Q6DEY7
Length = 629
Score = 161 (61.7 bits), Expect = 4.3e-09, P = 4.3e-09
Identities = 54/194 (27%), Positives = 91/194 (46%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHED-----IRALFEQHGTVLDIELSMHSKNRNRGLAFVT 147
+RE EY + NV + ED +R +F G L +++ M R+RG FV
Sbjct: 178 ERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVN 237
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYA--KIKK----KNPFPPVQPKPFATF---NLF 198
G+ +EA A++ + E GR + V A +I++ K F ++ + + NL+
Sbjct: 238 YGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLY 297
Query: 199 IANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ 258
+ NL LR+ F G + SA+V+ S G+GFV F S + A A++
Sbjct: 298 VKNLDDGIDDDRLRKEFSPYG-TITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMN 354
Query: 259 GKVIMC--LVIALS 270
G+++ L +AL+
Sbjct: 355 GRIVSTKPLYVALA 368
Score = 125 (49.1 bits), Expect = 6.0e-05, P = 6.0e-05
Identities = 36/142 (25%), Positives = 69/142 (48%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + ++ +RG FV + + A A+ + R + V + K ++
Sbjct: 119 FSAFGNILSCKV-VCDEHGSRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRR 177
Query: 181 KNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYG 240
+ K N++I N + K LRE F + G + +S +V+ D+ RS G+G
Sbjct: 178 ERELE-YGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFG-NTLSVKVMM-DDTGRSRGFG 234
Query: 241 FVSFKSKKVAETAISAFQGKVI 262
FV++ + + A+ A+S GK +
Sbjct: 235 FVNYGNHEEAQKAVSEMNGKEV 256
Score = 117 (46.2 bits), Expect = 0.00048, P = 0.00048
Identities = 35/143 (24%), Positives = 71/143 (49%)
Query: 121 FEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179
F G ++ I + + R+ G A++ P +A AL+ + +GR +++ +++
Sbjct: 31 FSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTMNFEVIKGRPIRIMWSQ-- 88
Query: 180 KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
++P + N+FI NL K L + F + G +++S +V+ ++ R GY
Sbjct: 89 -RDP----GLRKSGVGNVFIKNLDESIDNKALYDTFSAFG-NILSCKVVCDEHGSR--GY 140
Query: 240 GFVSFKSKKVAETAISAFQGKVI 262
GFV F++++ A AI G ++
Sbjct: 141 GFVHFETQEAANRAIQTMNGMLL 163
>UNIPROTKB|F1PSC4 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:AAEX03012469
Ensembl:ENSCAFT00000029161 Uniprot:F1PSC4
Length = 334
Score = 156 (60.0 bits), Expect = 4.9e-09, P = 4.9e-09
Identities = 44/169 (26%), Positives = 76/169 (44%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGS 150
E ++ +T L+ +P T +++R+LF G V +L + G FV +
Sbjct: 19 EDCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVT 78
Query: 151 PDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKD 210
+A A+N L + +T+KV+YA+ P V NL+I+ L KD
Sbjct: 79 AKDAERAINTLNGLRLQSKTIKVSYAR-----PSSEV----IKDANLYISGLPRTMTQKD 129
Query: 211 LREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ + F G ++++ V+ S G F+ F + AE AI++F G
Sbjct: 130 VEDMFSRFG-RIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 177
>UNIPROTKB|G3MYJ0 [details] [associations]
symbol:G3MYJ0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000064073 Uniprot:G3MYJ0
Length = 625
Score = 160 (61.4 bits), Expect = 5.7e-09, P = 5.7e-09
Identities = 46/164 (28%), Positives = 87/164 (53%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAAL 158
SKT LV N+ +++T E ++ +FE+ I++ + +++G AF+ S ++A AL
Sbjct: 400 SKT-LVLSNLSYSATEETLQEVFEK---ATHIKVPQNQNGKSKGYAFIEFASFEDAKEAL 455
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISE 218
N+ E EGR +++ +++ P + +P T LF+ LS + + L+E F +
Sbjct: 456 NSCNKREIEGRAIRL---ELQGPRGSPNARSQPSKT--LFVKGLSEDTTEETLKESF--D 508
Query: 219 GWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ-GKV 261
G + A ++ S G+GFV F S++ A+ A A + G++
Sbjct: 509 G--SIRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI 550
>UNIPROTKB|G3MXT4 [details] [associations]
symbol:G3MXT4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000065413 Uniprot:G3MXT4
Length = 630
Score = 160 (61.4 bits), Expect = 5.8e-09, P = 5.8e-09
Identities = 46/164 (28%), Positives = 87/164 (53%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAAL 158
SKT LV N+ +++T E ++ +FE+ I++ + +++G AF+ S ++A AL
Sbjct: 405 SKT-LVLSNLSYSATEETLQEVFEK---ATHIKVPQNQNGKSKGYAFIEFASFEDAKEAL 460
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISE 218
N+ E EGR +++ +++ P + +P T LF+ LS + + L+E F +
Sbjct: 461 NSCNKREIEGRAIRL---ELQGPRGSPNARSQPSKT--LFVKGLSEDTTEETLKESF--D 513
Query: 219 GWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ-GKV 261
G + A ++ S G+GFV F S++ A+ A A + G++
Sbjct: 514 G--SIRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI 555
>UNIPROTKB|G3X7M4 [details] [associations]
symbol:G3X7M4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000038502 OMA:ENAMEIR Uniprot:G3X7M4
Length = 630
Score = 160 (61.4 bits), Expect = 5.8e-09, P = 5.8e-09
Identities = 46/164 (28%), Positives = 87/164 (53%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAAL 158
SKT LV N+ +++T E ++ +FE+ I++ + +++G AF+ S ++A AL
Sbjct: 405 SKT-LVLSNLSYSATEETLQEVFEK---ATHIKVPQNQNGKSKGYAFIEFASFEDAKEAL 460
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISE 218
N+ E EGR +++ +++ P + +P T LF+ LS + + L+E F +
Sbjct: 461 NSCNKREIEGRAIRL---ELQGPRGSPNARSQPSKT--LFVKGLSEDTTEETLKESF--D 513
Query: 219 GWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ-GKV 261
G + A ++ S G+GFV F S++ A+ A A + G++
Sbjct: 514 G--SIRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI 555
>WB|WBGene00015943 [details] [associations]
symbol:tiar-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0009792
GO:GO:0002009 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011 GO:GO:0000003
GO:GO:0003676 EMBL:FO080599 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
GeneID:173967 KEGG:cel:CELE_C18A3.5 UCSC:C18A3.5f.1 CTD:173967
NextBio:881893 RefSeq:NP_495121.1 ProteinModelPortal:Q95QV8
SMR:Q95QV8 IntAct:Q95QV8 STRING:Q95QV8 PRIDE:Q95QV8
EnsemblMetazoa:C18A3.5a WormBase:C18A3.5a InParanoid:Q95QV8
OMA:WAVEPGQ ArrayExpress:Q95QV8 Uniprot:Q95QV8
Length = 408
Score = 157 (60.3 bits), Expect = 6.1e-09, P = 6.1e-09
Identities = 53/161 (32%), Positives = 76/161 (47%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLE 162
L N+ T T + I LF Q G+V ++ N AFV +A+ AL +
Sbjct: 48 LYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDGSNDP--YAFVEFSDHGQASQALQTMN 105
Query: 163 SYEFEGRTLKVNYAKIKKKNPFPPVQPKPFAT---FNLFIANLSFEARAKDLREFFISEG 219
R +KVN+A ++ P Q T F++F+ +LS E + LRE F G
Sbjct: 106 KRLLLDREMKVNWA-VE-----PGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFG 159
Query: 220 WDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
DV A+VI N +S GYGFVS+ ++ AE AI G+
Sbjct: 160 -DVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQ 199
>UNIPROTKB|F1NLH0 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:SNSRNCP
EMBL:AADN02012596 IPI:IPI00594347 ProteinModelPortal:F1NLH0
Ensembl:ENSGALT00000017146 Uniprot:F1NLH0
Length = 371
Score = 156 (60.0 bits), Expect = 6.4e-09, P = 6.4e-09
Identities = 47/189 (24%), Positives = 81/189 (42%)
Query: 73 SATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIEL 132
S TT P +S + + + SKT L+ +P T E+ R+LF G + +L
Sbjct: 23 SNTTNGPSSNSRNCPSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKL 82
Query: 133 SMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKP 191
++ G FV P +A A+N L + +T+KV+YA+ +
Sbjct: 83 VRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS--------- 133
Query: 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAE 251
NL+++ L K+L + F G ++++ ++ S G GF+ F + AE
Sbjct: 134 IRDANLYVSGLPKTMTQKELEQLFSQYG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAE 192
Query: 252 TAISAFQGK 260
AI G+
Sbjct: 193 EAIKGLNGQ 201
>ASPGD|ASPL0000011897 [details] [associations]
symbol:AN3739 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BN001302
ProteinModelPortal:C8V7B0 EnsemblFungi:CADANIAT00004984
HOGENOM:HOG000217892 OMA:ERAEIQY Uniprot:C8V7B0
Length = 484
Score = 116 (45.9 bits), Expect = 6.7e-09, Sum P(2) = 6.7e-09
Identities = 25/85 (29%), Positives = 43/85 (50%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQ---HGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAAL 158
+L N+P+ +D++ LF Q GTV+ ++ + R +G V SPD+A A+
Sbjct: 223 QLYVSNLPFNVGWQDLKDLFRQAAQQGTVIRADVHTDASGRPKGSGIVAFESPDDARNAI 282
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNP 183
Y+++GRTL+V + P
Sbjct: 283 QQFNGYDWQGRTLEVREDRFAGSGP 307
Score = 86 (35.3 bits), Expect = 6.7e-09, Sum P(2) = 6.7e-09
Identities = 27/84 (32%), Positives = 39/84 (46%)
Query: 185 PPVQPKPFATF---------NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRR 235
P V P PF + +++ NL + DL + F + G V AE+ + N R
Sbjct: 362 PSVPPNPFTDYATSGGEKSNTIYVRNLPWSTCNDDLVDLFSTIG-KVERAEIQYEPNGR- 419
Query: 236 SAGYGFVSFKSKKVAETAISAFQG 259
S G G V F + AET+I+ F G
Sbjct: 420 SRGTGVVQFDNADTAETSIAKFTG 443
>UNIPROTKB|F1NEC5 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:AADN02050416 IPI:IPI00586587
Ensembl:ENSGALT00000037991 Uniprot:F1NEC5
Length = 945
Score = 134 (52.2 bits), Expect = 6.8e-09, Sum P(2) = 6.8e-09
Identities = 28/91 (30%), Positives = 53/91 (58%)
Query: 92 EQREEEYSKT-RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRN-RGLAFVTMG 149
++ EE+ S++ RL +N+P+TST ED+ +F ++G + +I + + +G AF+T
Sbjct: 392 DEEEEDLSESGRLFVRNLPFTSTEEDLEKIFSKYGPLSEIHFPIDRLTKKPKGFAFITYM 451
Query: 150 SPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
P+ A A ++ F+GR + + + IKK
Sbjct: 452 IPEHAVKAYAEMDGQVFQGRMMHLLPSTIKK 482
Score = 120 (47.3 bits), Expect = 0.00037, P = 0.00037
Identities = 46/182 (25%), Positives = 81/182 (44%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR----NRGLAFVT 147
E EE L +N+ +T+T ++ F + G V +S + G FV
Sbjct: 708 EDEEESIPGCTLFIKNLNFTTTEGTLKETFSKVGAVKSCTISKKKDKAGTLLSMGFGFVE 767
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQP-------KPFATFNLFIA 200
P+ A AL L+ +G L+V KI ++ P V+ K T + +
Sbjct: 768 YKKPESAQKALRRLQGCIVDGHKLEV---KISERAVRPAVKSSRKKQTVKKQKTSKILVR 824
Query: 201 NLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAG------YGFVSFKSKKVAETAI 254
N+ F+A +++RE F + G ++ + + P++ AG +GFV F +K+ A+ A
Sbjct: 825 NIPFQATVREIRELFSTFG-ELKTVRL-----PKKMAGTGSHRGFGFVDFLTKQDAKKAF 878
Query: 255 SA 256
+A
Sbjct: 879 NA 880
Score = 73 (30.8 bits), Expect = 6.8e-09, Sum P(2) = 6.8e-09
Identities = 22/70 (31%), Positives = 33/70 (47%)
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRR----SAGYGFVSFKSKKVAET 252
LFI NL+F L+E F G V + I + S G+GFV +K + A+
Sbjct: 719 LFIKNLNFTTTEGTLKETFSKVG--AVKSCTISKKKDKAGTLLSMGFGFVEYKKPESAQK 776
Query: 253 AISAFQGKVI 262
A+ QG ++
Sbjct: 777 ALRRLQGCIV 786
>WB|WBGene00012904 [details] [associations]
symbol:tiar-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HSSP:P11940 EMBL:AL110485 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 RefSeq:NP_496718.1 UniGene:Cel.14057
ProteinModelPortal:Q9U2F5 SMR:Q9U2F5 IntAct:Q9U2F5 PaxDb:Q9U2F5
EnsemblMetazoa:Y46G5A.13 GeneID:174909 KEGG:cel:CELE_Y46G5A.13
UCSC:Y46G5A.13 CTD:174909 WormBase:Y46G5A.13 InParanoid:Q9U2F5
NextBio:886000 Uniprot:Q9U2F5
Length = 434
Score = 157 (60.3 bits), Expect = 6.9e-09, P = 6.9e-09
Identities = 48/163 (29%), Positives = 79/163 (48%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATA 156
E +T VA N+ T E + LF Q G V+ ++ + N AFV ++AT
Sbjct: 37 EDPRTLFVA-NLDPAITDEFLATLFNQIGAVMKAKIIF--EGLNDPYAFVEFSDHNQATL 93
Query: 157 ALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFI 216
AL + E + + V +A ++ +P+ F++F+ +L E + LRE F+
Sbjct: 94 ALQSHNGRELLEKEMHVTWAFEPREPGENRSKPETSRHFHVFVGDLCSEIDSTKLREAFV 153
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
G +V A++I +N + GYGFVS+ ++ AE AI G
Sbjct: 154 KFG-EVSEAKIIRDNNTNKGKGYGFVSYPRREDAERAIDEMNG 195
>UNIPROTKB|P19338 [details] [associations]
symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IPI] [GO:0001525 "angiogenesis" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0042162 "telomeric DNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938
Pathway_Interaction_DB:telomerasepathway GO:GO:0005654
GO:GO:0005730 Pathway_Interaction_DB:aurora_b_pathway GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0003723 GO:GO:0030529
GO:GO:0042162 EMBL:AC017104 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K11294 CTD:4691 HOGENOM:HOG000113885 EMBL:M60858 EMBL:AK091742
IPI:IPI00604620 PIR:A35804 PIR:S53728 RefSeq:NP_005372.2
UniGene:Hs.79110 PDB:2FC8 PDB:2FC9 PDB:2KRR PDBsum:2FC8 PDBsum:2FC9
PDBsum:2KRR ProteinModelPortal:P19338 SMR:P19338 DIP:DIP-89N
IntAct:P19338 MINT:MINT-4999081 STRING:P19338 PhosphoSite:P19338
DMDM:90110781 DOSAC-COBS-2DPAGE:P19338 SWISS-2DPAGE:P19338
PaxDb:P19338 PRIDE:P19338 DNASU:4691 Ensembl:ENST00000322723
GeneID:4691 KEGG:hsa:4691 UCSC:uc002vru.3 GeneCards:GC02M232318
HGNC:HGNC:7667 HPA:CAB004210 HPA:HPA023981 MIM:164035
neXtProt:NX_P19338 PharmGKB:PA31469 InParanoid:P19338 OMA:KERDTRT
OrthoDB:EOG45MN5J PhylomeDB:P19338 ChiTaRS:NCL
EvolutionaryTrace:P19338 GenomeRNAi:4691 NextBio:18090
PMAP-CutDB:P19338 ArrayExpress:P19338 Bgee:P19338 CleanEx:HS_NCL
Genevestigator:P19338 GermOnline:ENSG00000115053 Uniprot:P19338
Length = 710
Score = 160 (61.4 bits), Expect = 6.9e-09, P = 6.9e-09
Identities = 48/164 (29%), Positives = 88/164 (53%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAAL 158
SKT LV N+ +++T E ++ +FE+ T + + + + K++ G AF+ S ++A AL
Sbjct: 485 SKT-LVLSNLSYSATEETLQEVFEK-ATFIKVPQNQNGKSK--GYAFIEFASFEDAKEAL 540
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISE 218
N+ E EGR +++ +++ P + +P T LF+ LS + + L+E F +
Sbjct: 541 NSCNKREIEGRAIRL---ELQGPRGSPNARSQPSKT--LFVKGLSEDTTEETLKESF--D 593
Query: 219 GWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ-GKV 261
G V A ++ S G+GFV F S++ A+ A A + G++
Sbjct: 594 G--SVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI 635
Score = 122 (48.0 bits), Expect = 0.00015, P = 0.00015
Identities = 39/169 (23%), Positives = 90/169 (53%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKN-RNRGLAFVTMGS 150
+ ++E ++T L+A+N+P+ T ++++ +FE E+ + SK+ +++G+A++ +
Sbjct: 385 DSKKERDART-LLAKNLPYKVTQDELKEVFEDAA-----EIRLVSKDGKSKGIAYIEFKT 438
Query: 151 PDEATAALNNLESYEFEGRTLKVNYAKIKKKNP-FPPVQPKPFA--TFNLFIANLSFEAR 207
+A + E +GR++ + Y K +N + + ++ + L ++NLS+ A
Sbjct: 439 EADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSAT 498
Query: 208 AKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
+ L+E F + +V + N + S GY F+ F S + A+ A+++
Sbjct: 499 EETLQEVFEKATF----IKVPQNQNGK-SKGYAFIEFASFEDAKEALNS 542
>UNIPROTKB|Q4R4J7 [details] [associations]
symbol:NCL "Nucleolin" species:9541 "Macaca fascicularis"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 OrthoDB:EOG45MN5J
EMBL:AB169897 EMBL:AB168220 ProteinModelPortal:Q4R4J7 SMR:Q4R4J7
PRIDE:Q4R4J7 Uniprot:Q4R4J7
Length = 711
Score = 160 (61.4 bits), Expect = 6.9e-09, P = 6.9e-09
Identities = 48/164 (29%), Positives = 88/164 (53%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAAL 158
SKT LV N+ +++T E ++ +FE+ T + + + + K++ G AF+ S ++A AL
Sbjct: 486 SKT-LVLSNLSYSATEETLQEVFEK-ATFIKVPQNQNGKSK--GYAFIEFASFEDAKEAL 541
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISE 218
N+ E EGR +++ +++ P + +P T LF+ LS + + L+E F +
Sbjct: 542 NSCNKREIEGRAIRL---ELQGPRGSPNARSQPSKT--LFVKGLSEDTTEETLKESF--D 594
Query: 219 GWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ-GKV 261
G V A ++ S G+GFV F S++ A+ A A + G++
Sbjct: 595 G--SVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI 636
Score = 122 (48.0 bits), Expect = 0.00015, P = 0.00015
Identities = 39/169 (23%), Positives = 90/169 (53%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKN-RNRGLAFVTMGS 150
+ ++E ++T L+A+N+P+ T ++++ +FE E+ + SK+ +++G+A++ +
Sbjct: 386 DSKKERDART-LLAKNLPYKVTQDELKEVFEDAA-----EIRLVSKDGKSKGIAYIEFKT 439
Query: 151 PDEATAALNNLESYEFEGRTLKVNYAKIKKKNP-FPPVQPKPFA--TFNLFIANLSFEAR 207
+A + E +GR++ + Y K +N + + ++ + L ++NLS+ A
Sbjct: 440 EADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSAT 499
Query: 208 AKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
+ L+E F + +V + N + S GY F+ F S + A+ A+++
Sbjct: 500 EETLQEVFEKATF----IKVPQNQNGK-SKGYAFIEFASFEDAKEALNS 543
>UNIPROTKB|Q5RF26 [details] [associations]
symbol:NCL "Nucleolin" species:9601 "Pongo abelii"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 KO:K11294 CTD:4691
EMBL:CR857335 RefSeq:NP_001127178.1 UniGene:Pab.18146
ProteinModelPortal:Q5RF26 SMR:Q5RF26 GeneID:100174230
KEGG:pon:100174230 InParanoid:Q5RF26 Uniprot:Q5RF26
Length = 712
Score = 160 (61.4 bits), Expect = 6.9e-09, P = 6.9e-09
Identities = 48/164 (29%), Positives = 88/164 (53%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAAL 158
SKT LV N+ +++T E ++ +FE+ T + + + + K++ G AF+ S ++A AL
Sbjct: 487 SKT-LVLSNLSYSATEETLQEVFEK-ATFIKVPQNQNGKSK--GYAFIEFASFEDAKEAL 542
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISE 218
N+ E EGR +++ +++ P + +P T LF+ LS + + L+E F +
Sbjct: 543 NSCNKREIEGRAIRL---ELQGPRGSPNARSQPSKT--LFVKGLSEDTTEETLKESF--D 595
Query: 219 GWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ-GKV 261
G V A ++ S G+GFV F S++ A+ A A + G++
Sbjct: 596 G--SVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI 637
Score = 122 (48.0 bits), Expect = 0.00015, P = 0.00015
Identities = 39/169 (23%), Positives = 90/169 (53%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKN-RNRGLAFVTMGS 150
+ ++E ++T L+A+N+P+ T ++++ +FE E+ + SK+ +++G+A++ +
Sbjct: 387 DSKKERDART-LLAKNLPYKVTQDELKEVFEDAA-----EIRLVSKDGKSKGIAYIEFKT 440
Query: 151 PDEATAALNNLESYEFEGRTLKVNYAKIKKKNP-FPPVQPKPFA--TFNLFIANLSFEAR 207
+A + E +GR++ + Y K +N + + ++ + L ++NLS+ A
Sbjct: 441 EADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSAT 500
Query: 208 AKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
+ L+E F + +V + N + S GY F+ F S + A+ A+++
Sbjct: 501 EETLQEVFEKATF----IKVPQNQNGK-SKGYAFIEFASFEDAKEALNS 544
>UNIPROTKB|F1Q0B0 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008022
"protein C-terminus binding" evidence=IEA] [GO:0005938 "cell
cortex" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0001525 "angiogenesis" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0030529 GO:GO:0042162
KO:K11294 GeneTree:ENSGT00550000074656 CTD:4691 OMA:KERDTRT
EMBL:AAEX03014432 RefSeq:XP_850477.2 Ensembl:ENSCAFT00000017622
GeneID:608445 KEGG:cfa:608445 Uniprot:F1Q0B0
Length = 715
Score = 160 (61.4 bits), Expect = 7.0e-09, P = 7.0e-09
Identities = 48/164 (29%), Positives = 88/164 (53%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAAL 158
SKT LV N+ +++T E ++ +FE+ T + + + + K++ G AF+ S ++A AL
Sbjct: 490 SKT-LVLSNLSYSATEETLQEVFEK-ATFIKVPQNQNGKSK--GYAFIEFASFEDAKEAL 545
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISE 218
N+ E EGR +++ +++ P + +P T LF+ LS + + L+E F +
Sbjct: 546 NSCNKREIEGRAIRL---ELQGPRGSPNARSQPSKT--LFVKGLSEDTTEETLKESF--D 598
Query: 219 GWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ-GKV 261
G V A ++ S G+GFV F S++ A+ A A + G++
Sbjct: 599 G--SVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI 640
Score = 118 (46.6 bits), Expect = 0.00044, P = 0.00044
Identities = 37/169 (21%), Positives = 90/169 (53%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKN-RNRGLAFVTMGS 150
+ +++ ++T L+A+N+P+ T ++++ +FE +E+ + SK+ +++G+A++ +
Sbjct: 390 DSKKDRDART-LLAKNLPYKVTQDELKEVFEDA-----VEIRLVSKDGKSKGIAYIEFKT 443
Query: 151 PDEATAALNNLESYEFEGRTLKVNYAKIK-KKNPFPPVQPKPFA--TFNLFIANLSFEAR 207
+A + E +GR++ + Y K + + + ++ + L ++NLS+ A
Sbjct: 444 EADAEKTFEEKQGTEIDGRSISLYYTGEKGQSQDYRGGKNSTWSGESKTLVLSNLSYSAT 503
Query: 208 AKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
+ L+E F + +V + N + S GY F+ F S + A+ A+++
Sbjct: 504 EETLQEVFEKATF----IKVPQNQNGK-SKGYAFIEFASFEDAKEALNS 547
>UNIPROTKB|E1B8K6 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
GeneTree:ENSGT00550000074656 CTD:4691 EMBL:DAAA02006195
IPI:IPI00971535 RefSeq:NP_001193589.1 UniGene:Bt.107977
UniGene:Bt.108558 UniGene:Bt.7403 UniGene:Bt.79166
ProteinModelPortal:E1B8K6 IntAct:E1B8K6 PRIDE:E1B8K6
Ensembl:ENSBTAT00000021529 GeneID:497013 KEGG:bta:497013
OMA:RLEYSQS NextBio:20865826 Uniprot:E1B8K6
Length = 720
Score = 160 (61.4 bits), Expect = 7.0e-09, P = 7.0e-09
Identities = 46/164 (28%), Positives = 87/164 (53%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAAL 158
SKT LV N+ +++T E ++ +FE+ I++ + +++G AF+ S ++A AL
Sbjct: 495 SKT-LVLSNLSYSATEETLQEVFEK---ATHIKVPQNQNGKSKGYAFIEFASFEDAKEAL 550
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISE 218
N+ E EGR +++ +++ P + +P T LF+ LS + + L+E F +
Sbjct: 551 NSCNKREIEGRAIRL---ELQGPRGSPNARSQPSKT--LFVKGLSEDTTEETLKESF--D 603
Query: 219 GWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ-GKV 261
G + A ++ S G+GFV F S++ A+ A A + G++
Sbjct: 604 G--SIRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI 645
Score = 119 (46.9 bits), Expect = 0.00034, P = 0.00034
Identities = 38/169 (22%), Positives = 89/169 (52%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKN-RNRGLAFVTMGS 150
+ +++ ++T L+A+N+P+ T ++++ +FE +E+ + SK+ +++G+A++ +
Sbjct: 395 DSKKDRDART-LLAKNLPYKVTQDELKEVFEDA-----VEIRLVSKDGKSKGIAYIEFKT 448
Query: 151 PDEATAALNNLESYEFEGRTLKVNYAKIK-KKNPFPPVQPKPFA--TFNLFIANLSFEAR 207
+A L + E +GR++ + Y K + + ++ + L ++NLS+ A
Sbjct: 449 EADAEKTLEEKQGTEIDGRSISLYYTGEKGQSQDHRGGKNSTWSGESKTLVLSNLSYSAT 508
Query: 208 AKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
+ L+E F +V + N + S GY F+ F S + A+ A+++
Sbjct: 509 EETLQEVFEK----ATHIKVPQNQNGK-SKGYAFIEFASFEDAKEALNS 552
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 159 (61.0 bits), Expect = 7.5e-09, P = 7.5e-09
Identities = 42/157 (26%), Positives = 79/157 (50%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E+++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVG 264
Query: 175 YA--KIKK----KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A K+++ K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
+V+ D RS G+GFV F S + A A++ G+++
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 122 (48.0 bits), Expect = 0.00013, P = 0.00013
Identities = 40/148 (27%), Positives = 69/148 (46%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N ++G AFV + + A A+ + R + V K +K
Sbjct: 119 FSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 181 KNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ + K F N++I N E ++L+E F G +S +V+ D +S G+
Sbjct: 178 EREAELGAKAKEFT--NVYIKNFGEEVDDENLKELFSQFG-KTLSVKVM-RDPSGKSKGF 233
Query: 240 GFVSFKSKKVAETAISAFQGKVIMCLVI 267
GFVS++ + A A+ GK I VI
Sbjct: 234 GFVSYEKHEDANKAVEEMNGKEISGKVI 261
Score = 116 (45.9 bits), Expect = 0.00062, P = 0.00062
Identities = 37/143 (25%), Positives = 70/143 (48%)
Query: 121 FEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179
F G VL I + R+ G A+V P +A AL+ + +G+ +++ +++
Sbjct: 31 FSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQ-- 88
Query: 180 KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
++P + N+FI NL K L + F + G +++S +V+ +N S GY
Sbjct: 89 -RDP----SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCKVVCDENG--SKGY 140
Query: 240 GFVSFKSKKVAETAISAFQGKVI 262
FV F++++ A+ AI G ++
Sbjct: 141 AFVHFETQEAADKAIEKMNGMLL 163
>UNIPROTKB|F1N9I5 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727 GO:GO:0070935
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:AADN02063542 IPI:IPI00590347 ProteinModelPortal:F1N9I5
Ensembl:ENSGALT00000001029 Uniprot:F1N9I5
Length = 326
Score = 154 (59.3 bits), Expect = 8.1e-09, P = 8.1e-09
Identities = 44/169 (26%), Positives = 75/169 (44%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGS 150
E ++ +T L+ +P T +++R+LF G V +L + G FV +
Sbjct: 11 EDCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVT 70
Query: 151 PDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKD 210
+A A+N L + +T+KV+YA+ P V NL+I+ L KD
Sbjct: 71 AKDAERAINTLNGLRLQSKTIKVSYAR-----PSSEV----IKDANLYISGLPRSMTQKD 121
Query: 211 LREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ + F G ++++ V+ S G F+ F + AE AI+ F G
Sbjct: 122 VEDMFSRFG-RIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITNFNG 169
>MGI|MGI:1100851 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision)-like
1 (Hu antigen R)" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006417 "regulation of translation" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0019901 "protein kinase
binding" evidence=ISO] [GO:0035925 "mRNA 3'-UTR AU-rich region
binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=ISO;IMP;IDA] [GO:0048255 "mRNA stabilization"
evidence=ISO;IMP] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1100851 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0045727 EMBL:CH466566 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:U65735 EMBL:AK080365
EMBL:U17595 IPI:IPI00108271 PIR:I49144 RefSeq:NP_034615.2
UniGene:Mm.119162 HSSP:P26378 ProteinModelPortal:P70372 SMR:P70372
DIP:DIP-46480N MINT:MINT-4094207 STRING:P70372 PhosphoSite:P70372
PaxDb:P70372 PRIDE:P70372 Ensembl:ENSMUST00000098950 GeneID:15568
KEGG:mmu:15568 GeneTree:ENSGT00560000077064 InParanoid:P70372
OMA:YANRACA ChiTaRS:ELAVL1 NextBio:288542 Bgee:P70372
Genevestigator:P70372 GermOnline:ENSMUSG00000040028 Uniprot:P70372
Length = 326
Score = 154 (59.3 bits), Expect = 8.1e-09, P = 8.1e-09
Identities = 44/169 (26%), Positives = 76/169 (44%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGS 150
E ++ +T L+ +P T E++R+LF G V +L + G FV +
Sbjct: 11 EDCRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVT 70
Query: 151 PDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKD 210
+A A++ L + +T+KV+YA+ P V NL+I+ L KD
Sbjct: 71 AKDAERAISTLNGLRLQSKTIKVSYAR-----PSSEV----IKDANLYISGLPRTMTQKD 121
Query: 211 LREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ + F G ++++ V+ S G F+ F + AE AI++F G
Sbjct: 122 VEDMFSRFG-RIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
>RGD|1308649 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006417 "regulation of
translation" evidence=ISO] [GO:0017091 "AU-rich element binding"
evidence=ISO] [GO:0019901 "protein kinase binding" evidence=ISO]
[GO:0035925 "mRNA 3'-UTR AU-rich region binding" evidence=ISO]
[GO:0045727 "positive regulation of translation" evidence=IEA;ISO]
[GO:0048255 "mRNA stabilization" evidence=ISO] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1308649 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 eggNOG:COG0724 HOVERGEN:HBG002295 CTD:1994
HOGENOM:HOG000231162 KO:K13088 OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:CH474084
EMBL:BC168972 EMBL:AB212679 IPI:IPI00869767 RefSeq:NP_001102318.1
UniGene:Rn.216517 SMR:B5DF91 STRING:B5DF91
Ensembl:ENSRNOT00000001415 GeneID:363854 KEGG:rno:363854
UCSC:RGD:1308649 NextBio:684342 Genevestigator:B5DF91
Uniprot:B5DF91
Length = 326
Score = 154 (59.3 bits), Expect = 8.1e-09, P = 8.1e-09
Identities = 44/169 (26%), Positives = 76/169 (44%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGS 150
E ++ +T L+ +P T E++R+LF G V +L + G FV +
Sbjct: 11 EDCRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVT 70
Query: 151 PDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKD 210
+A A++ L + +T+KV+YA+ P V NL+I+ L KD
Sbjct: 71 AKDAERAISTLNGLRLQSKTIKVSYAR-----PSSEV----IKDANLYISGLPRTMTQKD 121
Query: 211 LREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ + F G ++++ V+ S G F+ F + AE AI++F G
Sbjct: 122 VEDMFSRFG-RIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
>MGI|MGI:97286 [details] [associations]
symbol:Ncl "nucleolin" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=ISO;IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005938
"cell cortex" evidence=ISO] [GO:0008022 "protein C-terminus
binding" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0042162 "telomeric DNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:97286 GO:GO:0005938 GO:GO:0005654
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0001525
GO:GO:0003723 GO:GO:0030529 GO:GO:0042162 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K11294 GeneTree:ENSGT00550000074656 CTD:4691
HOGENOM:HOG000113885 OMA:KERDTRT OrthoDB:EOG45MN5J ChiTaRS:NCL
EMBL:X07699 EMBL:AF318184 EMBL:AK050958 EMBL:AK083307 EMBL:AK144894
EMBL:AK161706 EMBL:AK163275 EMBL:BC005460 EMBL:M22089
IPI:IPI00317794 PIR:A29958 RefSeq:NP_035010.3 UniGene:Mm.154378
UniGene:Mm.474153 ProteinModelPortal:P09405 SMR:P09405
IntAct:P09405 STRING:P09405 PhosphoSite:P09405
REPRODUCTION-2DPAGE:P09405 PaxDb:P09405 PRIDE:P09405
Ensembl:ENSMUST00000027438 GeneID:17975 KEGG:mmu:17975
UCSC:uc007bvl.1 InParanoid:P09405 NextBio:292933 PMAP-CutDB:P09405
Bgee:P09405 CleanEx:MM_NCL Genevestigator:P09405
GermOnline:ENSMUSG00000026234 Uniprot:P09405
Length = 707
Score = 159 (61.0 bits), Expect = 8.9e-09, P = 8.9e-09
Identities = 51/164 (31%), Positives = 87/164 (53%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAAL 158
SKT LV N+ +++T E + +FE+ T + + + H K + G AF+ S ++A AL
Sbjct: 486 SKT-LVLSNLSYSATKETLEEVFEK-ATFIKVPQNPHGKPK--GYAFIEFASFEDAKEAL 541
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISE 218
N+ E EGRT+++ +++ N + +P T LF+ LS + + L+E F E
Sbjct: 542 NSCNKMEIEGRTIRL---ELQGSNS----RSQPSKT--LFVKGLSEDTTEETLKESF--E 590
Query: 219 GWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ-GKV 261
G V A ++ S G+GFV F S++ A+ A A + G++
Sbjct: 591 G--SVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI 632
Score = 116 (45.9 bits), Expect = 0.00072, P = 0.00072
Identities = 36/156 (23%), Positives = 77/156 (49%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLE 162
L+A+N+ + T ++++ +FE ++I L + +++G+A++ S +A L +
Sbjct: 397 LLAKNLSFNITEDELKEVFED---AMEIRL-VSQDGKSKGIAYIEFKSEADAEKNLEEKQ 452
Query: 163 SYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA--TFNLFIANLSFEARAKDLREFFISEGW 220
E +GR++ + Y K + + ++ + L ++NLS+ A + L E F E
Sbjct: 453 GAEIDGRSVSLYYTGEKGQRQERTGKTSTWSGESKTLVLSNLSYSATKETLEEVF--EKA 510
Query: 221 DVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
+ H P+ GY F+ F S + A+ A+++
Sbjct: 511 TFIKVPQNPHGKPK---GYAFIEFASFEDAKEALNS 543
>UNIPROTKB|Q91903 [details] [associations]
symbol:elavl2 "ELAV-like protein 2" species:8355 "Xenopus
laevis" [GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0007399 "nervous system
development" evidence=IMP] [GO:0008298 "intracellular mRNA
localization" evidence=IMP] [GO:0017131 "uridine-rich cytoplasmic
polyadenylylation element binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA;IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0051260 "protein homooligomerization" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0007399 GO:GO:0000166
GO:GO:0051260 Gene3D:3.30.70.330 GO:GO:0000122 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
HSSP:P26378 KO:K13208 EMBL:X85111 EMBL:U17597 EMBL:BC170539
EMBL:BC094189 PIR:I51676 RefSeq:NP_001081035.1
RefSeq:NP_001081613.1 UniGene:Xl.1648 UniGene:Xl.34955
ProteinModelPortal:Q91903 SMR:Q91903 MINT:MINT-2880431
GeneID:394342 GeneID:397952 KEGG:xla:394342 KEGG:xla:397952
CTD:394342 CTD:397952 Xenbase:XB-GENE-6254447
Xenbase:XB-GENE-866091 GO:GO:0017131 Uniprot:Q91903
Length = 389
Score = 155 (59.6 bits), Expect = 9.3e-09, P = 9.3e-09
Identities = 43/171 (25%), Positives = 77/171 (45%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH--SKNRNRGLAFVTMG 149
E E SKT L+ +P T E++++LF G + +L ++ ++ G FV
Sbjct: 57 ESNNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYI 116
Query: 150 SPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAK 209
P +A A+N L + +T+KV+YA+ + NL+++ L K
Sbjct: 117 DPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQK 167
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
+L + F G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 168 ELEQLFSQYG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 217
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 154 (59.3 bits), Expect = 9.5e-09, P = 9.5e-09
Identities = 44/181 (24%), Positives = 84/181 (46%)
Query: 81 VDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNR 139
V+++ ++ V++ E+ SKT L+ +P T E++++LF G + +L +
Sbjct: 21 VNNNCSSPVDSGNTED--SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQ 78
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI 199
+ G FV P +A A+N L + +T+KV+YA+ + NL++
Sbjct: 79 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYV 129
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ L K+L + F G ++++ ++ S G GF+ F + AE AI G
Sbjct: 130 SGLPKTMTQKELEQLFSQYG-RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Query: 260 K 260
+
Sbjct: 189 Q 189
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 158 (60.7 bits), Expect = 9.8e-09, P = 9.8e-09
Identities = 42/157 (26%), Positives = 78/157 (49%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVG 264
Query: 175 YA--KIKK----KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A K+++ K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
+V+ D RS G+GFV F S + A A++ G+++
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 121 (47.7 bits), Expect = 0.00017, P = 0.00017
Identities = 40/148 (27%), Positives = 68/148 (45%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N ++G AFV + + A A+ + R + V K +K
Sbjct: 119 FSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 181 KNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ + K F N++I N E + L+E F G +S +V+ D +S G+
Sbjct: 178 EREAELGAKAKEFT--NVYIKNFGEEVDDESLKELFSQFG-KTLSVKVM-RDPSGKSKGF 233
Query: 240 GFVSFKSKKVAETAISAFQGKVIMCLVI 267
GFVS++ + A A+ GK I VI
Sbjct: 234 GFVSYEKHEDANKAVEEMNGKEISGKVI 261
Score = 116 (45.9 bits), Expect = 0.00062, P = 0.00062
Identities = 37/143 (25%), Positives = 70/143 (48%)
Query: 121 FEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179
F G VL I + R+ G A+V P +A AL+ + +G+ +++ +++
Sbjct: 31 FSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQ-- 88
Query: 180 KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
++P + N+FI NL K L + F + G +++S +V+ +N S GY
Sbjct: 89 -RDP----SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCKVVCDENG--SKGY 140
Query: 240 GFVSFKSKKVAETAISAFQGKVI 262
FV F++++ A+ AI G ++
Sbjct: 141 AFVHFETQEAADKAIEKMNGMLL 163
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 158 (60.7 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 42/157 (26%), Positives = 79/157 (50%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E+++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVG 264
Query: 175 YA--KIKK----KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A K+++ K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
+V+ D RS G+GFV F S + A A++ G+++
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 122 (48.0 bits), Expect = 0.00014, P = 0.00014
Identities = 40/148 (27%), Positives = 69/148 (46%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N ++G AFV + + A A+ + R + V K +K
Sbjct: 119 FSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 181 KNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ + K F N++I N E ++L+E F G +S +V+ D +S G+
Sbjct: 178 EREAELGAKAKEFT--NVYIKNFGEEVDDENLKELFSQFG-KTLSVKVM-RDPSGKSKGF 233
Query: 240 GFVSFKSKKVAETAISAFQGKVIMCLVI 267
GFVS++ + A A+ GK I VI
Sbjct: 234 GFVSYEKHEDANKAVEEMNGKEITGKVI 261
Score = 116 (45.9 bits), Expect = 0.00064, P = 0.00064
Identities = 37/143 (25%), Positives = 70/143 (48%)
Query: 121 FEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179
F G VL I + R+ G A+V P +A AL+ + +G+ +++ +++
Sbjct: 31 FSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQ-- 88
Query: 180 KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
++P + N+FI NL K L + F + G +++S +V+ +N S GY
Sbjct: 89 -RDP----SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCKVVCDENG--SKGY 140
Query: 240 GFVSFKSKKVAETAISAFQGKVI 262
FV F++++ A+ AI G ++
Sbjct: 141 AFVHFETQEAADKAIEKMNGMLL 163
>WB|WBGene00003902 [details] [associations]
symbol:pab-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0040010 "positive regulation of growth
rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0007276 "gamete generation" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0043186
"P granule" evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040035 GO:GO:0000932 GO:GO:0007276 GO:GO:0043186 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AL032631 HSSP:P11940 GeneTree:ENSGT00640000091232
GeneID:172920 KEGG:cel:CELE_Y106G6H.2 UCSC:Y106G6H.2b CTD:172920
NextBio:877531 PIR:T26427 RefSeq:NP_001021709.1
ProteinModelPortal:Q9U302 SMR:Q9U302 DIP:DIP-26308N IntAct:Q9U302
MINT:MINT-226577 STRING:Q9U302 PRIDE:Q9U302
EnsemblMetazoa:Y106G6H.2a.1 EnsemblMetazoa:Y106G6H.2a.2
EnsemblMetazoa:Y106G6H.2a.3 EnsemblMetazoa:Y106G6H.2a.4
EnsemblMetazoa:Y106G6H.2a.5 EnsemblMetazoa:Y106G6H.2a.6
WormBase:Y106G6H.2a InParanoid:Q9U302 OMA:CKVAMDE
ArrayExpress:Q9U302 Uniprot:Q9U302
Length = 646
Score = 158 (60.7 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 49/184 (26%), Positives = 88/184 (47%)
Query: 90 NTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMG 149
N E E T + +N E + LF + G + E+ M + +++G FV
Sbjct: 202 NRELGETAKQFTNVYVKNFGDHYNKETLEKLFAKFGNITSCEV-MTVEGKSKGFGFVAFA 260
Query: 150 SPDEATAALNNLESYEFEGRTLKVN----------YAKIKKKNPFPPVQP-KPFATFNLF 198
+P+EA A+ L EG LK++ +A++KKK+ + + + NL+
Sbjct: 261 NPEEAETAVQALHDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLY 320
Query: 199 IANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ 258
+ NL L++ F S G ++ SA+V+ +N R S G+GFV F+ + A +A++
Sbjct: 321 VKNLDETVDDDGLKKQFESYG-NITSAKVMTDENGR-SKGFGFVCFEKPEEATSAVTEMN 378
Query: 259 GKVI 262
K++
Sbjct: 379 SKMV 382
Score = 116 (45.9 bits), Expect = 0.00064, P = 0.00064
Identities = 40/155 (25%), Positives = 74/155 (47%)
Query: 114 HEDIRA--LFEQH---GTVLDIELSMHSKNR-NRGLAFVTMGSPDEATAALNNLESYEFE 167
H D+ LFE+ G VL I + + R + G A+V P +A A++ +
Sbjct: 40 HPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDTMNFEALH 99
Query: 168 GRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEV 227
G+ +++ +++ ++P + N+FI NL K + + F G +++S +V
Sbjct: 100 GKPMRIMWSQ---RDP----AMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFG-NILSCKV 151
Query: 228 IFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
D S GYGFV F++++ A+ AI G ++
Sbjct: 152 AI-DEDGFSKGYGFVHFETEEAAQNAIQKVNGMLL 185
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 154 (59.3 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 44/181 (24%), Positives = 84/181 (46%)
Query: 81 VDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNR 139
V+++ ++ V++ E+ SKT L+ +P T E++++LF G + +L +
Sbjct: 21 VNNNCSSPVDSGNTED--SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQ 78
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI 199
+ G FV P +A A+N L + +T+KV+YA+ + NL++
Sbjct: 79 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYV 129
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ L K+L + F G ++++ ++ S G GF+ F + AE AI G
Sbjct: 130 SGLPKTMTQKELEQLFSQYG-RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Query: 260 K 260
+
Sbjct: 189 Q 189
>UNIPROTKB|H0Y5F5 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000421687 Uniprot:H0Y5F5
Length = 550
Score = 157 (60.3 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 42/157 (26%), Positives = 78/157 (49%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 107 ESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVG 166
Query: 175 YA--KIKK----KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A K+++ K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 167 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 225
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
+V+ D RS G+GFV F S + A A++ G+++
Sbjct: 226 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIV 260
Score = 119 (46.9 bits), Expect = 0.00024, P = 0.00024
Identities = 39/148 (26%), Positives = 68/148 (45%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N ++G AFV + + A A+ + R + V K +K
Sbjct: 21 FSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 79
Query: 181 KNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ + K F N++I N E + L+E F G +S +V+ D +S G+
Sbjct: 80 EREAELGAKAKEFT--NVYIKNFGEEVDDESLKELFSQFG-KTLSVKVM-RDPNGKSKGF 135
Query: 240 GFVSFKSKKVAETAISAFQGKVIMCLVI 267
GFVS++ + A A+ GK I +I
Sbjct: 136 GFVSYEKHEDANKAVEEMNGKEISGKII 163
>UNIPROTKB|F1P336 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00550000074656
EMBL:AADN02020638 EMBL:AADN02020639 IPI:IPI00680028
Ensembl:ENSGALT00000033265 ArrayExpress:F1P336 Uniprot:F1P336
Length = 689
Score = 158 (60.7 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 47/168 (27%), Positives = 87/168 (51%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEAT 155
E SKT L+ N+ + ++ E ++ LF++ I++ +++ R +G AFV + ++A
Sbjct: 455 ERESKT-LIVNNLSYAASEETLQELFKK---ATSIKMPQNNQGRPKGYAFVEFPTAEDAK 510
Query: 156 AALNNLESYEFEGRTLKVNYAKIK-KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
ALN+ + E EGR +++ ++ +K + LF+ LS + + LRE
Sbjct: 511 EALNSCNNTEIEGRAIRLEFSSPSWQKGNMNARGGFNQQSKTLFVRGLSEDTTEETLRES 570
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ-GKV 261
F EG +SA ++ + S G+GFV F S + A+ A A + G++
Sbjct: 571 F--EG--SISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEI 614
Score = 144 (55.7 bits), Expect = 4.7e-07, P = 4.7e-07
Identities = 42/180 (23%), Positives = 88/180 (48%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
E ++E ++T L +N+P+ T ++++ +FE L++ L ++ + ++G+A++ +
Sbjct: 361 ENKKERDART-LFVKNLPYRVTEDEMKNVFEN---ALEVRLVLNKEGSSKGMAYIEFKTE 416
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDL 211
EA AL + E +GR + ++Y K + + + L + NLS+ A + L
Sbjct: 417 AEAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQKGGGERESK-TLIVNNLSYAASEETL 475
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271
+E F + + + +N R GY FV F + + A+ A+++ I I L +
Sbjct: 476 QELF-KKATSIKMPQ----NNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLEF 530
>UNIPROTKB|F1NU40 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005938 "cell cortex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0042162 "telomeric
DNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005938
GO:GO:0005654 GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0042162
GeneTree:ENSGT00550000074656 IPI:IPI00577202 OMA:ENAMEIR
EMBL:AADN02020638 EMBL:AADN02020639 Ensembl:ENSGALT00000012486
ArrayExpress:F1NU40 Uniprot:F1NU40
Length = 691
Score = 158 (60.7 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 47/168 (27%), Positives = 87/168 (51%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEAT 155
E SKT L+ N+ + ++ E ++ LF++ I++ +++ R +G AFV + ++A
Sbjct: 457 ERESKT-LIVNNLSYAASEETLQELFKK---ATSIKMPQNNQGRPKGYAFVEFPTAEDAK 512
Query: 156 AALNNLESYEFEGRTLKVNYAKIK-KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
ALN+ + E EGR +++ ++ +K + LF+ LS + + LRE
Sbjct: 513 EALNSCNNTEIEGRAIRLEFSSPSWQKGNMNARGGFNQQSKTLFVRGLSEDTTEETLRES 572
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ-GKV 261
F EG +SA ++ + S G+GFV F S + A+ A A + G++
Sbjct: 573 F--EG--SISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEI 616
Score = 144 (55.7 bits), Expect = 4.7e-07, P = 4.7e-07
Identities = 42/180 (23%), Positives = 88/180 (48%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
E ++E ++T L +N+P+ T ++++ +FE L++ L ++ + ++G+A++ +
Sbjct: 363 ENKKERDART-LFVKNLPYRVTEDEMKNVFEN---ALEVRLVLNKEGSSKGMAYIEFKTE 418
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDL 211
EA AL + E +GR + ++Y K + + + L + NLS+ A + L
Sbjct: 419 AEAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQKGGGERESK-TLIVNNLSYAASEETL 477
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271
+E F + + + +N R GY FV F + + A+ A+++ I I L +
Sbjct: 478 QELF-KKATSIKMPQ----NNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLEF 532
>UNIPROTKB|P15771 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K11294 EMBL:X17199 EMBL:M21791
IPI:IPI00577202 PIR:S08414 RefSeq:NP_990596.1 UniGene:Gga.3663
ProteinModelPortal:P15771 SMR:P15771 STRING:P15771 PRIDE:P15771
GeneID:396201 KEGG:gga:396201 CTD:4691 HOGENOM:HOG000113885
InParanoid:P15771 NextBio:20816253 Uniprot:P15771
Length = 694
Score = 158 (60.7 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 47/168 (27%), Positives = 87/168 (51%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEAT 155
E SKT L+ N+ + ++ E ++ LF++ I++ +++ R +G AFV + ++A
Sbjct: 457 ERESKT-LIVNNLSYAASEETLQELFKK---ATSIKMPQNNQGRPKGYAFVEFPTAEDAK 512
Query: 156 AALNNLESYEFEGRTLKVNYAKIK-KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
ALN+ + E EGR +++ ++ +K + LF+ LS + + LRE
Sbjct: 513 EALNSCNNTEIEGRAIRLEFSSPSWQKGNMNARGGFNQQSKTLFVRGLSEDTTEETLRES 572
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ-GKV 261
F EG +SA ++ + S G+GFV F S + A+ A A + G++
Sbjct: 573 F--EG--SISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEI 616
Score = 144 (55.7 bits), Expect = 4.7e-07, P = 4.7e-07
Identities = 42/180 (23%), Positives = 88/180 (48%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
E ++E ++T L +N+P+ T ++++ +FE L++ L ++ + ++G+A++ +
Sbjct: 363 ENKKERDART-LFVKNLPYRVTEDEMKNVFEN---ALEVRLVLNKEGSSKGMAYIEFKTE 418
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDL 211
EA AL + E +GR + ++Y K + + + L + NLS+ A + L
Sbjct: 419 AEAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQKGGGERESK-TLIVNNLSYAASEETL 477
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271
+E F + + + +N R GY FV F + + A+ A+++ I I L +
Sbjct: 478 QELF-KKATSIKMPQ----NNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLEF 532
>UNIPROTKB|E2R9I1 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR011598
InterPro:IPR012677 Pfam:PF00010 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS50888 PROSITE:PS51309 SMART:SM00353
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.280.10 SUPFAM:SSF47459
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 EMBL:AAEX03009572
Ensembl:ENSCAFT00000004949 Uniprot:E2R9I1
Length = 700
Score = 158 (60.7 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 42/157 (26%), Positives = 78/157 (49%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 245 ESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVG 304
Query: 175 YA--KIKK----KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A K+++ K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 305 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 363
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
+V+ D RS G+GFV F S + A A++ G+++
Sbjct: 364 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIV 398
Score = 121 (47.7 bits), Expect = 0.00019, P = 0.00019
Identities = 40/148 (27%), Positives = 68/148 (45%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N ++G AFV + + A A+ + R + V K +K
Sbjct: 159 FSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 217
Query: 181 KNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ + K F N++I N E + L+E F G +S +V+ D +S G+
Sbjct: 218 EREAELGAKAKEFT--NVYIKNFGEEVDDESLKELFSQFG-KTLSVKVM-RDPSGKSKGF 273
Query: 240 GFVSFKSKKVAETAISAFQGKVIMCLVI 267
GFVS++ + A A+ GK I VI
Sbjct: 274 GFVSYEKHEDANKAVEEMNGKEISGKVI 301
>UNIPROTKB|E1C240 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AADN02057847
EMBL:AADN02057848 EMBL:AADN02057849 EMBL:AADN02057850
IPI:IPI00584568 ProteinModelPortal:E1C240
Ensembl:ENSGALT00000025475 Uniprot:E1C240
Length = 388
Score = 154 (59.3 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 42/165 (25%), Positives = 75/165 (45%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEAT 155
E SKT L+ +P + T E++++LF G + +L ++ G FV P +A
Sbjct: 63 EDSKTNLIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDAE 122
Query: 156 AALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFF 215
A+N L + +T+KV+YA+ + NL+++ L K+L + F
Sbjct: 123 KAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQKELEQLF 173
Query: 216 ISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 174 SQYG-RIITSRILVDQVTGMSRGVGFIRFDKRIEAEEAIKGLNGQ 217
>TAIR|locus:2122990 [details] [associations]
symbol:AT4G19610 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002687 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14787
OMA:VFREKNV IPI:IPI00517416 RefSeq:NP_193696.3 UniGene:At.50354
ProteinModelPortal:F4JT92 SMR:F4JT92 PRIDE:F4JT92
EnsemblPlants:AT4G19610.1 GeneID:827703 KEGG:ath:AT4G19610
Uniprot:F4JT92
Length = 816
Score = 145 (56.1 bits), Expect = 4.5e-07, P = 4.5e-07
Identities = 45/186 (24%), Positives = 88/186 (47%)
Query: 81 VDSSSAAAVNTEQREE---EYSKTRLV-AQNVPWTSTHEDIRALFEQ---HGTVLDIELS 133
++ + VN EQ+ E + +++ ++ +N+ + +T E ++ F + G +L + +
Sbjct: 578 IEENGVRRVNLEQQVEIDPDVTESNVLNVKNLSFKTTDEGLKKHFTKLVKQGKILSVTII 637
Query: 134 MHSKNR---NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPK 190
H KN + G FV S + AT+ +L+ +G L + + + K+ + K
Sbjct: 638 KHKKNEKYLSSGYGFVEFDSVETATSVYRDLQGTVLDGHALILRFCENKRSDKVGKDSNK 697
Query: 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVA 250
L + N++FEA ++LR+ F G + + + N + AGY FV F +K+ A
Sbjct: 698 DKPCTKLHVKNIAFEATKRELRQLFSPFGQ--IKSMRLPKKNIGQYAGYAFVEFVTKQEA 755
Query: 251 ETAISA 256
A A
Sbjct: 756 LNAKKA 761
Score = 118 (46.6 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 27/99 (27%), Positives = 53/99 (53%)
Query: 81 VDSSSAAAVNTEQREEEYSKT-RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKN- 138
V+ A ++ ++ T RL +N+P+T+T E++ F G + ++ L + +
Sbjct: 273 VEGDGKVAQESKAVSDDVLDTGRLFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETK 332
Query: 139 RNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177
R+RG+A++ P+ A A+ L++ F+GR L + AK
Sbjct: 333 RSRGIAYILYLIPECAARAMEELDNSSFQGRLLHILPAK 371
Score = 87 (35.7 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 27/92 (29%), Positives = 47/92 (51%)
Query: 178 IKKKNPFPPVQPKPFATFN--LFIANLSFEARAKDLREFF---ISEGWDVVSAEVIFHDN 232
+++ N V+ P T + L + NLSF+ + L++ F + +G ++S +I H
Sbjct: 583 VRRVNLEQQVEIDPDVTESNVLNVKNLSFKTTDEGLKKHFTKLVKQG-KILSVTIIKHKK 641
Query: 233 PRR--SAGYGFVSFKSKKVAETAISAFQGKVI 262
+ S+GYGFV F S + A + QG V+
Sbjct: 642 NEKYLSSGYGFVEFDSVETATSVYRDLQGTVL 673
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 157 (60.3 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 42/157 (26%), Positives = 78/157 (49%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVG 264
Query: 175 YA--KIKK----KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A K+++ K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
+V+ D RS G+GFV F S + A A++ G+++
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 119 (46.9 bits), Expect = 0.00028, P = 0.00028
Identities = 39/148 (26%), Positives = 68/148 (45%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N ++G AFV + + A A+ + R + V K +K
Sbjct: 119 FSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 181 KNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ + K F N++I N E + L+E F G +S +V+ D +S G+
Sbjct: 178 EREAELGAKAKEFT--NVYIKNFGEEVDDESLKELFSQFG-KTLSVKVM-RDPNGKSKGF 233
Query: 240 GFVSFKSKKVAETAISAFQGKVIMCLVI 267
GFVS++ + A A+ GK I +I
Sbjct: 234 GFVSYEKHEDANKAVEEMNGKEISGKII 261
Score = 116 (45.9 bits), Expect = 0.00060, P = 0.00060
Identities = 37/143 (25%), Positives = 70/143 (48%)
Query: 121 FEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179
F G VL I + R+ G A+V P +A AL+ + +G+ +++ +++
Sbjct: 31 FSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQ-- 88
Query: 180 KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
++P + N+FI NL K L + F + G +++S +V+ +N S GY
Sbjct: 89 -RDP----SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCKVVCDENG--SKGY 140
Query: 240 GFVSFKSKKVAETAISAFQGKVI 262
FV F++++ A+ AI G ++
Sbjct: 141 AFVHFETQEAADKAIEKMNGMLL 163
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 157 (60.3 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 42/157 (26%), Positives = 78/157 (49%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVG 264
Query: 175 YA--KIKK----KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A K+++ K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
+V+ D RS G+GFV F S + A A++ G+++
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 119 (46.9 bits), Expect = 0.00029, P = 0.00029
Identities = 39/148 (26%), Positives = 68/148 (45%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N ++G AFV + + A A+ + R + V K +K
Sbjct: 119 FSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 181 KNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ + K F N++I N E + L+E F G +S +V+ D +S G+
Sbjct: 178 EREAELGAKAKEFT--NVYIKNFGEEVDDESLKELFSQFG-KTLSVKVM-RDPNGKSKGF 233
Query: 240 GFVSFKSKKVAETAISAFQGKVIMCLVI 267
GFVS++ + A A+ GK I +I
Sbjct: 234 GFVSYEKHEDANKAVEEMNGKEISGKII 261
Score = 116 (45.9 bits), Expect = 0.00064, P = 0.00064
Identities = 37/143 (25%), Positives = 70/143 (48%)
Query: 121 FEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179
F G VL I + R+ G A+V P +A AL+ + +G+ +++ +++
Sbjct: 31 FSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQ-- 88
Query: 180 KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
++P + N+FI NL K L + F + G +++S +V+ +N S GY
Sbjct: 89 -RDP----SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCKVVCDENG--SKGY 140
Query: 240 GFVSFKSKKVAETAISAFQGKVI 262
FV F++++ A+ AI G ++
Sbjct: 141 AFVHFETQEAADKAIEKMNGMLL 163
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 153 (58.9 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 43/181 (23%), Positives = 84/181 (46%)
Query: 81 VDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNR 139
++++ ++ V++ E+ SKT L+ +P T E++++LF G + +L +
Sbjct: 21 INNNCSSPVDSGNTED--SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQ 78
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI 199
+ G FV P +A A+N L + +T+KV+YA+ + NL++
Sbjct: 79 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYV 129
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ L K+L + F G ++++ ++ S G GF+ F + AE AI G
Sbjct: 130 SGLPKTMTQKELEQLFSQYG-RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Query: 260 K 260
+
Sbjct: 189 Q 189
>ZFIN|ZDB-GENE-980526-76 [details] [associations]
symbol:elavl3 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 3 (Hu antigen C)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-980526-76 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP OrthoDB:EOG43R3N0
EMBL:CR385086 EMBL:BC065343 IPI:IPI00512421 UniGene:Dr.75060
SMR:Q6P105 STRING:Q6P105 Ensembl:ENSDART00000028610
InParanoid:Q6P105 Uniprot:Q6P105
Length = 359
Score = 153 (58.9 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 42/163 (25%), Positives = 72/163 (44%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T E+ ++LF G + +L ++ G FV P++A A
Sbjct: 36 SKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKA 95
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + + +T+KV+YA+ + NL+++ L KD+ + F
Sbjct: 96 INTLNGLKLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMSQKDMEQLFSQ 146
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
G + S ++ S G GF+ F + AE AI G+
Sbjct: 147 YGRIITSRILVDQVTAGISRGVGFIRFDKRNEAEEAIKGLNGQ 189
>UNIPROTKB|Q15717 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IDA;IMP] [GO:0048255
"mRNA stabilization" evidence=IDA;IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0035925
"mRNA 3'-UTR AU-rich region binding" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0007275 "multicellular organismal
development" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0007275 GO:GO:0005829 GO:GO:0010467 GO:GO:0016071
GO:GO:0005654 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0017091 EMBL:CH471139 GO:GO:0045727 eggNOG:COG0724
GO:GO:0070935 HOVERGEN:HBG002295 EMBL:U38175 EMBL:BT009793
EMBL:BC003376 IPI:IPI00940851 RefSeq:NP_001410.2 UniGene:Hs.184492
UniGene:Hs.713744 PDB:3HI9 PDB:4ED5 PDB:4EGL PDB:4FXV PDBsum:3HI9
PDBsum:4ED5 PDBsum:4EGL PDBsum:4FXV ProteinModelPortal:Q15717
SMR:Q15717 IntAct:Q15717 MINT:MINT-5001300 STRING:Q15717
PhosphoSite:Q15717 DMDM:20981691 PaxDb:Q15717 PeptideAtlas:Q15717
PRIDE:Q15717 DNASU:1994 Ensembl:ENST00000407627 GeneID:1994
KEGG:hsa:1994 UCSC:uc002mjb.3 CTD:1994 GeneCards:GC19M008023
HGNC:HGNC:3312 HPA:CAB005256 MIM:603466 neXtProt:NX_Q15717
PharmGKB:PA27740 HOGENOM:HOG000231162 InParanoid:Q15717 KO:K13088
OrthoDB:EOG4Z8XWZ PhylomeDB:Q15717 BindingDB:Q15717
ChEMBL:CHEMBL1250379 EvolutionaryTrace:Q15717 GenomeRNAi:1994
NextBio:8063 ArrayExpress:Q15717 Bgee:Q15717 CleanEx:HS_ELAVL1
Genevestigator:Q15717 GermOnline:ENSG00000066044 TIGRFAMs:TIGR01661
Uniprot:Q15717
Length = 326
Score = 152 (58.6 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 43/164 (26%), Positives = 74/164 (45%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEAT 155
+ +T L+ +P T +++R+LF G V +L + G FV + +A
Sbjct: 16 DIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAE 75
Query: 156 AALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFF 215
A+N L + +T+KV+YA+ P V NL+I+ L KD+ + F
Sbjct: 76 RAINTLNGLRLQSKTIKVSYAR-----PSSEV----IKDANLYISGLPRTMTQKDVEDMF 126
Query: 216 ISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
G ++++ V+ S G F+ F + AE AI++F G
Sbjct: 127 SRFG-RIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
>UNIPROTKB|B1AM49 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
Ensembl:ENST00000359598 Uniprot:B1AM49
Length = 387
Score = 153 (58.9 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 43/181 (23%), Positives = 84/181 (46%)
Query: 81 VDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNR 139
++++ ++ V++ E+ SKT L+ +P T E++++LF G + +L +
Sbjct: 49 INNNCSSPVDSGNTED--SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQ 106
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI 199
+ G FV P +A A+N L + +T+KV+YA+ + NL++
Sbjct: 107 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYV 157
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ L K+L + F G ++++ ++ S G GF+ F + AE AI G
Sbjct: 158 SGLPKTMTQKELEQLFSQYG-RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 216
Query: 260 K 260
+
Sbjct: 217 Q 217
>UNIPROTKB|G3N063 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
Length = 388
Score = 153 (58.9 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 43/181 (23%), Positives = 84/181 (46%)
Query: 81 VDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNR 139
++++ ++ V++ E+ SKT L+ +P T E++++LF G + +L +
Sbjct: 50 INNNCSSPVDSGNTED--SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQ 107
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI 199
+ G FV P +A A+N L + +T+KV+YA+ + NL++
Sbjct: 108 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYV 158
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ L K+L + F G ++++ ++ S G GF+ F + AE AI G
Sbjct: 159 SGLPKTMTQKELEQLFSQYG-RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 217
Query: 260 K 260
+
Sbjct: 218 Q 218
>UNIPROTKB|E2RI94 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
Length = 388
Score = 153 (58.9 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 43/181 (23%), Positives = 84/181 (46%)
Query: 81 VDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNR 139
++++ ++ V++ E+ SKT L+ +P T E++++LF G + +L +
Sbjct: 50 INNNCSSPVDSGNTED--SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQ 107
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI 199
+ G FV P +A A+N L + +T+KV+YA+ + NL++
Sbjct: 108 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYV 158
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ L K+L + F G ++++ ++ S G GF+ F + AE AI G
Sbjct: 159 SGLPKTMTQKELEQLFSQYG-RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 217
Query: 260 K 260
+
Sbjct: 218 Q 218
>UNIPROTKB|B4DVB8 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 UniGene:Hs.184492
UniGene:Hs.713744 HGNC:HGNC:3312 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AC010336 EMBL:AC008975 EMBL:AK301013
IPI:IPI00301936 ProteinModelPortal:B4DVB8 SMR:B4DVB8 IntAct:B4DVB8
STRING:B4DVB8 PRIDE:B4DVB8 Ensembl:ENST00000351593 OMA:RFGGPLH
ArrayExpress:B4DVB8 Bgee:B4DVB8 Uniprot:B4DVB8
Length = 353
Score = 152 (58.6 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 43/164 (26%), Positives = 74/164 (45%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEAT 155
+ +T L+ +P T +++R+LF G V +L + G FV + +A
Sbjct: 43 DIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAE 102
Query: 156 AALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFF 215
A+N L + +T+KV+YA+ P V NL+I+ L KD+ + F
Sbjct: 103 RAINTLNGLRLQSKTIKVSYAR-----PSSEV----IKDANLYISGLPRTMTQKDVEDMF 153
Query: 216 ISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
G ++++ V+ S G F+ F + AE AI++F G
Sbjct: 154 SRFG-RIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 196
>RGD|628611 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 152 (58.6 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 44/181 (24%), Positives = 84/181 (46%)
Query: 81 VDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNR 139
V+++ ++ V++ E+ SKT L+ +P T E++++LF G + +L +
Sbjct: 21 VNNNCSSPVDSGNTED--SKTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQ 78
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI 199
+ G FV P +A A+N L + +T+KV+YA+ + NL++
Sbjct: 79 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYV 129
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ L K+L + F G ++++ ++ S G GF+ F + AE AI G
Sbjct: 130 SGLPKTMTQKELEQLFSQYG-RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Query: 260 K 260
+
Sbjct: 189 Q 189
>UNIPROTKB|Q8CH84 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 152 (58.6 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 44/181 (24%), Positives = 84/181 (46%)
Query: 81 VDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNR 139
V+++ ++ V++ E+ SKT L+ +P T E++++LF G + +L +
Sbjct: 21 VNNNCSSPVDSGNTED--SKTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQ 78
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI 199
+ G FV P +A A+N L + +T+KV+YA+ + NL++
Sbjct: 79 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYV 129
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ L K+L + F G ++++ ++ S G GF+ F + AE AI G
Sbjct: 130 SGLPKTMTQKELEQLFSQYG-RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Query: 260 K 260
+
Sbjct: 189 Q 189
>UNIPROTKB|Q5U259 [details] [associations]
symbol:elavl1-b "ELAV-like protein 1-B" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005938 "cell cortex" evidence=IDA] [GO:0007369
"gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA binding"
evidence=ISS] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0051259 "protein
oligomerization" evidence=ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 KO:K13088
TIGRFAMs:TIGR01661 EMBL:BC086269 RefSeq:NP_001088628.1
UniGene:Xl.22886 ProteinModelPortal:Q5U259 SMR:Q5U259 PRIDE:Q5U259
GeneID:495680 KEGG:xla:495680 CTD:495680 Xenbase:XB-GENE-865489
Uniprot:Q5U259
Length = 326
Score = 151 (58.2 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 41/165 (24%), Positives = 76/165 (46%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEA 154
++ +T L+ +P T +++R+LF G V +L + G FV + +A
Sbjct: 15 DDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDA 74
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
A+N L + +T+KV++A+ P + NL+I+ L KD+ +
Sbjct: 75 ERAINTLNGLRLQSKTIKVSFAR--------P-SSETIKDANLYISGLPRTMTQKDVEDM 125
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
F+ G ++++ V+ S G F+ F + AE AI++F G
Sbjct: 126 FLPFG-HIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNG 169
>ZFIN|ZDB-GENE-040704-9 [details] [associations]
symbol:elavl2 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
Length = 388
Score = 151 (58.2 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 44/181 (24%), Positives = 80/181 (44%)
Query: 81 VDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNR 139
V ++ + V E+ SKT L+ +P T E++++LF G + +L +
Sbjct: 49 VSNTCTSPVEMPNGSED-SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQ 107
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI 199
+ G FV P +A A+N L + +T+KV+YA+ + NL++
Sbjct: 108 SLGYGFVNYMEPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYV 158
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ L K+L + F G ++++ ++ S G GF+ F + AE AI G
Sbjct: 159 SGLPKTMTQKELEQLFSQFG-RIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLNG 217
Query: 260 K 260
+
Sbjct: 218 Q 218
>UNIPROTKB|Q6GR16 [details] [associations]
symbol:epabp-b "Embryonic polyadenylate-binding protein B"
species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043009
"chordate embryonic development" evidence=ISS] [GO:0043621 "protein
self-association" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0043621 GO:GO:0048255 GO:GO:0043009 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:BC071118
RefSeq:NP_001085351.1 UniGene:Xl.3974 ProteinModelPortal:Q6GR16
SMR:Q6GR16 PRIDE:Q6GR16 GeneID:443777 KEGG:xla:443777 CTD:443777
Xenbase:XB-GENE-6251876 GO:GO:0031370 Uniprot:Q6GR16
Length = 629
Score = 154 (59.3 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 52/194 (26%), Positives = 90/194 (46%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHED-----IRALFEQHGTVLDIELSMHSKNRNRGLAFVT 147
+RE EY + NV + ED ++ +F G L +++ M + R+RG FV
Sbjct: 178 ERELEYGAKVMEFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVN 237
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYA--KIKK----KNPFPPVQPKPFATF---NLF 198
G+ +EA A+ + E GR + V A +I++ K F ++ + + NL+
Sbjct: 238 YGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLY 297
Query: 199 IANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ 258
+ NL LR+ F G + S +V+ S G+GFV F S + A A++
Sbjct: 298 VKNLDDGIDDDRLRKEFSPYG-TITSTKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMN 354
Query: 259 GKVIMC--LVIALS 270
G+++ L +AL+
Sbjct: 355 GRIVSTKPLYVALA 368
Score = 120 (47.3 bits), Expect = 0.00022, P = 0.00022
Identities = 35/142 (24%), Positives = 68/142 (47%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + + +RG FV + + A A+ + R + V + K ++
Sbjct: 119 FSAFGDILSCKV-VCDEYGSRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRR 177
Query: 181 KNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYG 240
+ K N++I N + K L+E F + G + +S +V+ DN RS G+G
Sbjct: 178 ERELE-YGAKVMEFTNVYIKNFGEDMDDKRLKEIFSAFG-NTLSVKVMM-DNSGRSRGFG 234
Query: 241 FVSFKSKKVAETAISAFQGKVI 262
FV++ + + A+ A++ GK +
Sbjct: 235 FVNYGNHEEAQKAVTEMNGKEV 256
Score = 119 (46.9 bits), Expect = 0.00028, P = 0.00028
Identities = 36/143 (25%), Positives = 70/143 (48%)
Query: 121 FEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179
F G ++ I + + R+ G A++ P +A AL+ + +GR +++ +++
Sbjct: 31 FSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTMNFEVIKGRPIRIMWSQ-- 88
Query: 180 KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
++P + N+FI NL K L + F + G D++S +V+ + R GY
Sbjct: 89 -RDP----GLRKSGVGNVFIKNLDDSIDNKALYDTFSAFG-DILSCKVVCDEYGSR--GY 140
Query: 240 GFVSFKSKKVAETAISAFQGKVI 262
GFV F++++ A AI G ++
Sbjct: 141 GFVHFETQEAANRAIQTMNGMLL 163
>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
symbol:pabpc4 "poly(A) binding protein,
cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
Length = 637
Score = 154 (59.3 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 41/155 (26%), Positives = 78/155 (50%)
Query: 117 IRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176
++ LF+++G L +++ ++RG FV+ ++A A+ + E G+T+ V A
Sbjct: 208 LKELFDKYGKTLSVKVMTDPTGKSRGFGFVSYEKHEDANKAVEEMNGTELNGKTVFVGRA 267
Query: 177 KIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSAEV 227
+ K K F ++ + + + NL+I NL + LR+ F G + SA+V
Sbjct: 268 QKKMERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSAKV 326
Query: 228 IFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
+ + RS G+GFV F S + A A++ G+++
Sbjct: 327 MLEEG--RSKGFGFVCFSSPEEATKAVTEMNGRIV 359
>FB|FBgn0038345 [details] [associations]
symbol:CG5213 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0022008
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P19339
GeneTree:ENSGT00560000077064 EMBL:AY089405 RefSeq:NP_650473.1
UniGene:Dm.5039 SMR:Q9VF55 STRING:Q9VF55 EnsemblMetazoa:FBtr0083148
GeneID:41892 KEGG:dme:Dmel_CG5213 UCSC:CG5213-RA
FlyBase:FBgn0038345 eggNOG:NOG294033 InParanoid:Q9VF55 OMA:RRERTND
OrthoDB:EOG4DNCM8 GenomeRNAi:41892 NextBio:826136 Uniprot:Q9VF55
Length = 251
Score = 146 (56.5 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 44/158 (27%), Positives = 77/158 (48%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLA----FVTMGSPDEAT 155
KT L+ +P T ++ LF + G + ++ H R G++ FV S +A
Sbjct: 40 KTNLILNYLPQDMTESELHRLFSKFGEIRKAKIIRH---RRTGISCCYGFVDYVSERQAA 96
Query: 156 AALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFF 215
AA+N ++ YE G+ LKV +A+ P + + ++ +L++ NL K +RE F
Sbjct: 97 AAVNGMDGYETRGKRLKVAFAR--------PSEYESTSS-SLYVGNLPTYMDEKKVRELF 147
Query: 216 ISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETA 253
+ G ++V ++ H RS G F+ F+ + AE A
Sbjct: 148 ATYG-NIVDVNLLRHKFNNRSRGVAFLQFELVRDAEVA 184
Score = 116 (45.9 bits), Expect = 0.00012, P = 0.00012
Identities = 30/93 (32%), Positives = 46/93 (49%)
Query: 94 REEEYSKTR--LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGS 150
R EY T L N+P + +R LF +G ++D+ L H NR+RG+AF+
Sbjct: 118 RPSEYESTSSSLYVGNLPTYMDEKKVRELFATYGNIVDVNLLRHKFNNRSRGVAFLQFEL 177
Query: 151 PDEATAALNNLESYEFEG--RTLKVNYAKIKKK 181
+A A ++ Y EG R L V + + +KK
Sbjct: 178 VRDAEVAKYGMDRYMIEGASRPLTVKFVEREKK 210
>MGI|MGI:109157 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=ISO;IDA] [GO:0030154 "cell
differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109157 GO:GO:0007399 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OMA:ARRYTGP
ChiTaRS:ELAVL3 EMBL:U29148 EMBL:U29149 EMBL:BC052097
IPI:IPI00122451 IPI:IPI00222990 RefSeq:NP_034617.1
UniGene:Mm.390167 PDB:1D8Z PDB:1D9A PDB:1FNX PDBsum:1D8Z
PDBsum:1D9A PDBsum:1FNX ProteinModelPortal:Q60900 SMR:Q60900
STRING:Q60900 PhosphoSite:Q60900 PaxDb:Q60900 PRIDE:Q60900
Ensembl:ENSMUST00000003501 GeneID:15571 KEGG:mmu:15571
UCSC:uc009onl.2 UCSC:uc009onn.1 InParanoid:Q60900 OrthoDB:EOG43R3N0
EvolutionaryTrace:Q60900 NextBio:288556 Bgee:Q60900
Genevestigator:Q60900 GermOnline:ENSMUSG00000003410 Uniprot:Q60900
Length = 367
Score = 150 (57.9 bits), Expect = 3.2e-08, P = 3.2e-08
Identities = 39/163 (23%), Positives = 74/163 (45%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T ++ ++LF G + +L ++ G FV P++A A
Sbjct: 37 SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKA 96
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + + +T+KV+YA+ + NL+++ L K++ + F
Sbjct: 97 INTLNGLKLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMSQKEMEQLFSQ 147
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 148 YG-RIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQ 189
>RGD|628892 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:628892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 HSSP:P19339 eggNOG:COG0724 EMBL:CH473993
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OrthoDB:EOG43R3N0
EMBL:AB097198 IPI:IPI00192527 RefSeq:NP_758827.1 UniGene:Rn.22586
SMR:Q76IJ9 STRING:Q76IJ9 Ensembl:ENSRNOT00000018416 GeneID:282824
KEGG:rno:282824 UCSC:RGD:628892 InParanoid:Q76IJ9 NextBio:624869
Genevestigator:Q76IJ9 Uniprot:Q76IJ9
Length = 367
Score = 150 (57.9 bits), Expect = 3.2e-08, P = 3.2e-08
Identities = 39/163 (23%), Positives = 74/163 (45%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T ++ ++LF G + +L ++ G FV P++A A
Sbjct: 37 SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKA 96
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + + +T+KV+YA+ + NL+++ L K++ + F
Sbjct: 97 INTLNGLKLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMSQKEMEQLFSQ 147
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 148 YG-RIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQ 189
>MGI|MGI:1921361 [details] [associations]
symbol:Rbm19 "RNA binding motif protein 19" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1921361 GO:GO:0007275 GO:GO:0005737 GO:GO:0005694
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0040019 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV GeneTree:ENSGT00700000104575
CTD:9904 HOVERGEN:HBG055637 OrthoDB:EOG4D7Z56 ChiTaRS:RBM19
EMBL:BC025619 EMBL:BC034010 EMBL:AK004657 EMBL:AK053511
IPI:IPI00165762 IPI:IPI00475221 RefSeq:NP_083038.1 UniGene:Mm.41022
PDB:1WHW PDB:1WHX PDB:2CPF PDB:2CPH PDBsum:1WHW PDBsum:1WHX
PDBsum:2CPF PDBsum:2CPH ProteinModelPortal:Q8R3C6 SMR:Q8R3C6
STRING:Q8R3C6 PhosphoSite:Q8R3C6 PaxDb:Q8R3C6 PRIDE:Q8R3C6
Ensembl:ENSMUST00000031590 GeneID:74111 KEGG:mmu:74111
UCSC:uc008zha.1 InParanoid:Q8R3C6 EvolutionaryTrace:Q8R3C6
NextBio:339804 Bgee:Q8R3C6 CleanEx:MM_RBM19 Genevestigator:Q8R3C6
Uniprot:Q8R3C6
Length = 952
Score = 147 (56.8 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 45/176 (25%), Positives = 83/176 (47%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR-----NRGLAFV 146
E+ EE L +N+ +++T E ++ +F + G + +S KN+ + G FV
Sbjct: 713 EEEEESIPGCTLFIKNLNFSTTEETLKGVFSKVGAIKSCTISK-KKNKAGVLLSMGFGFV 771
Query: 147 TMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQ----PKPFATFNLFIANL 202
P++A AL L+ + +G L+V ++ K + PK T + + N+
Sbjct: 772 EYKKPEQAQKALKQLQGHTVDGHKLEVRISERATKPALTSTRKKQVPKKQTTSKILVRNI 831
Query: 203 SFEARAKDLREFFISEGW--DVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
F+A +++RE F + G V + + R G+GFV F +K+ A+ A +A
Sbjct: 832 PFQANQREIRELFSTFGELKTVRLPKKMTGTGAHR--GFGFVDFITKQDAKKAFNA 885
Score = 127 (49.8 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 29/91 (31%), Positives = 49/91 (53%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRN-RGLAFVTMGS 150
E+ E+ RL +N+ +TS+ ED+ LF +G + ++ + S + +G AFVT
Sbjct: 391 EEEEDLADSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMF 450
Query: 151 PDEATAALNNLESYEFEGRTLKVNYAKIKKK 181
P+ A A ++ F+GR L V + IKK+
Sbjct: 451 PEHAVKAYAEVDGQVFQGRMLHVLPSTIKKE 481
Score = 95 (38.5 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 23/77 (29%), Positives = 35/77 (45%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
+RL+ +N+P E R LF GT+ D L + R F+ S +EA AALN+
Sbjct: 2 SRLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQAALNH 61
Query: 161 LESYEFEGRTLKVNYAK 177
+ + V + K
Sbjct: 62 FHRSFIDTTRITVEFCK 78
Score = 74 (31.1 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 21/69 (30%), Positives = 32/69 (46%)
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRR---SAGYGFVSFKSKKVAETA 253
LFI NL+F + L+ F G + S + N S G+GFV +K + A+ A
Sbjct: 724 LFIKNLNFSTTEETLKGVFSKVG-AIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKA 782
Query: 254 ISAFQGKVI 262
+ QG +
Sbjct: 783 LKQLQGHTV 791
>TAIR|locus:2200975 [details] [associations]
symbol:AT1G01080 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0006655
"phosphatidylglycerol biosynthetic process" evidence=RCA]
[GO:0010103 "stomatal complex morphogenesis" evidence=RCA]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0005634 GO:GO:0009570 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0009941 GO:GO:0003676 IPI:IPI00657321
RefSeq:NP_001030925.1 UniGene:At.26684 ProteinModelPortal:F4HQH8
SMR:F4HQH8 PRIDE:F4HQH8 EnsemblPlants:AT1G01080.2 GeneID:839463
KEGG:ath:AT1G01080 OMA:MRVRYSV PhylomeDB:F4HQH8 Uniprot:F4HQH8
Length = 294
Score = 138 (53.6 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
Identities = 46/165 (27%), Positives = 80/165 (48%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSKN--RNRGLAFVTMGSPDEATAALNNLESY 164
N+P + + +F+ GTV+ +E+ + +RG +VTMGS + A A+ +L+
Sbjct: 114 NIPRSYDIAQLLDMFQPFGTVISVEVVSRNPQTGESRGSGYVTMGSINSAKIAIASLDGT 173
Query: 165 EFEGRTLKVNYAKIK----KKNP-FPPVQPKPFATFN----LFIANLSFEARAKDLREFF 215
E GR ++V Y+ ++NP PK + +++ NL + + LR F
Sbjct: 174 EVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLPWFTQPDGLRNHF 233
Query: 216 ISEGWDVVSAEVIFHDNPR-RSAGYGFVSFKSKKVAETAISAFQG 259
G +VS V+ HD R+ + F+SF S + + A+S F G
Sbjct: 234 SKFG-TIVSTRVL-HDRKTGRNRVFAFLSFTSGEERDAALS-FNG 275
Score = 45 (20.9 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
Identities = 20/60 (33%), Positives = 30/60 (50%)
Query: 48 LSSSPFHAYTFPITPKKVSPFVFHFSATTQDPFVD-------SSSAAAVNTEQREEEYSK 100
L SS ++Y + + S FH S+ ++ PFV SSS +V E++EEE K
Sbjct: 27 LISSSSYSYLESLKLQFSSSNSFHHSSLSR-PFVAQPLQIKVSSSELSVLDEEKEEEVVK 85
>UNIPROTKB|D4AAT0 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00392493 ProteinModelPortal:D4AAT0
Ensembl:ENSRNOT00000035262 ArrayExpress:D4AAT0 Uniprot:D4AAT0
Length = 351
Score = 149 (57.5 bits), Expect = 3.9e-08, P = 3.9e-08
Identities = 42/163 (25%), Positives = 72/163 (44%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T E+ R+LF G + +L ++ G FV P +A A
Sbjct: 42 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 101
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + +T+KV+YA+ + NL+++ L K+L + F
Sbjct: 102 INTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQKELEQLFSQ 152
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 153 YG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 194
>WB|WBGene00004315 [details] [associations]
symbol:rbd-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0018996
"molting cycle, collagen and cuticulin-based cuticle" evidence=IMP]
[GO:0008406 "gonad development" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0006396
"RNA processing" evidence=IMP] [GO:0040039 "inductive cell
migration" evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0000478 "endonucleolytic cleavage involved in rRNA processing"
evidence=IMP] [GO:0040025 "vulval development" evidence=IMP]
[GO:0040002 "collagen and cuticulin-based cuticle development"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0040007 GO:GO:0040010
GO:GO:0005730 GO:GO:0008406 GO:GO:0000166 GO:GO:0018996
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040035 GO:GO:0040039
HSSP:P19339 GO:GO:0040002 GO:GO:0040025 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV GeneTree:ENSGT00700000104575
GO:GO:0000478 EMBL:Z83127 PIR:T25186 RefSeq:NP_502432.1
ProteinModelPortal:Q9XU67 SMR:Q9XU67 DIP:DIP-26131N
MINT:MINT-1105789 STRING:Q9XU67 PaxDb:Q9XU67
EnsemblMetazoa:T23F6.4.1 EnsemblMetazoa:T23F6.4.2 GeneID:178229
KEGG:cel:CELE_T23F6.4 UCSC:T23F6.4.1 CTD:178229 WormBase:T23F6.4
InParanoid:Q9XU67 NextBio:900268 Uniprot:Q9XU67
Length = 872
Score = 116 (45.9 bits), Expect = 3.9e-08, Sum P(2) = 3.9e-08
Identities = 24/81 (29%), Positives = 47/81 (58%)
Query: 94 REEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRN-RGLAFVTMGSPD 152
RE+ RL +N+P+ + +D++ LF+++G V ++++ + K +G A V P+
Sbjct: 272 REKILETGRLFLRNLPYATKEDDLQFLFKKYGEVSEVQVVIDKKTGACKGFAIVEFVFPE 331
Query: 153 EATAALNNLESYEFEGRTLKV 173
A AA + L+ Y F+GR + +
Sbjct: 332 AAVAAYSALDGYVFKGRMMHI 352
Score = 105 (42.0 bits), Expect = 6.9e-07, Sum P(2) = 6.9e-07
Identities = 24/73 (32%), Positives = 36/73 (49%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
TRL+ +N+P T T + +R FE++G + D L + + RG AFV A+ AL
Sbjct: 3 TRLIVKNLPSTCTEQQLRKFFEKYGQISDASLKYTKEGKFRGFAFVGFLDEGSASNALAK 62
Query: 161 LESYEFEGRTLKV 173
F + L V
Sbjct: 63 SNQTFFNSKKLTV 75
Score = 85 (35.0 bits), Expect = 3.9e-08, Sum P(2) = 3.9e-08
Identities = 32/107 (29%), Positives = 52/107 (48%)
Query: 162 ESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWD 221
E E E + +V A+ KKK+ + + + LF+ NL+F+ L F D
Sbjct: 609 EVIEEEEKPKEVE-AEDKKKSSKKQSEKEIESGSTLFVKNLAFDTTDGSLEFLFRKRYGD 667
Query: 222 VV-SAEVIFHDNPRR-----SAGYGFVSFKSKKVAETAISAFQGKVI 262
+V SA++ NP S G+GFV F + A+TA+ QG+++
Sbjct: 668 LVKSAQISKKLNPAEPTKPLSMGFGFVQFYTAFDAKTALKDMQGELL 714
>UNIPROTKB|A2VDK5 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
OMA:SNSRNCP EMBL:DAAA02008922 EMBL:DAAA02008923 EMBL:BC133283
IPI:IPI00729244 RefSeq:NP_001075075.1 UniGene:Bt.26853 SMR:A2VDK5
STRING:A2VDK5 Ensembl:ENSBTAT00000028031 GeneID:535408
KEGG:bta:535408 InParanoid:A2VDK5 NextBio:20876736 Uniprot:A2VDK5
Length = 366
Score = 149 (57.5 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 42/163 (25%), Positives = 72/163 (44%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T E+ R+LF G + +L ++ G FV P +A A
Sbjct: 44 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 103
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + +T+KV+YA+ + NL+++ L K+L + F
Sbjct: 104 INTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQKELEQLFSQ 154
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 155 YG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 196
>UNIPROTKB|J9PAL3 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1996 EMBL:AAEX03009733
RefSeq:XP_859918.1 ProteinModelPortal:J9PAL3
Ensembl:ENSCAFT00000045412 GeneID:475361 KEGG:cfa:475361
Uniprot:J9PAL3
Length = 366
Score = 149 (57.5 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 42/163 (25%), Positives = 72/163 (44%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T E+ R+LF G + +L ++ G FV P +A A
Sbjct: 44 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 103
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + +T+KV+YA+ + NL+++ L K+L + F
Sbjct: 104 INTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQKELEQLFSQ 154
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 155 YG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 196
>UNIPROTKB|B1APY9 [details] [associations]
symbol:ELAVL4 "cDNA FLJ50619, highly similar to ELAV-like
protein 4" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
UniGene:Hs.213050 HGNC:HGNC:3315 EMBL:AK298902 IPI:IPI00643012
SMR:B1APY9 STRING:B1APY9 Ensembl:ENST00000371819 UCSC:uc009vyu.3
Uniprot:B1APY9
Length = 371
Score = 149 (57.5 bits), Expect = 4.4e-08, P = 4.4e-08
Identities = 42/163 (25%), Positives = 72/163 (44%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T E+ R+LF G + +L ++ G FV P +A A
Sbjct: 49 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 108
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + +T+KV+YA+ + NL+++ L K+L + F
Sbjct: 109 INTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQKELEQLFSQ 159
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 160 YG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 201
>RGD|1560027 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO;ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996 OMA:SNSRNCP
EMBL:S83320 IPI:IPI00560167 RefSeq:NP_001071119.1 UniGene:Rn.134702
ProteinModelPortal:O09032 SMR:O09032 STRING:O09032
PhosphoSite:O09032 GeneID:432358 KEGG:rno:432358 UCSC:RGD:1560027
InParanoid:O09032 NextBio:696819 ArrayExpress:O09032
Genevestigator:O09032 GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 149 (57.5 bits), Expect = 4.4e-08, P = 4.4e-08
Identities = 42/163 (25%), Positives = 72/163 (44%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T E+ R+LF G + +L ++ G FV P +A A
Sbjct: 37 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 96
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + +T+KV+YA+ + NL+++ L K+L + F
Sbjct: 97 INTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQKELEQLFSQ 147
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 148 YG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 189
>UNIPROTKB|O09032 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV
CTD:1996 OMA:SNSRNCP EMBL:S83320 IPI:IPI00560167
RefSeq:NP_001071119.1 UniGene:Rn.134702 ProteinModelPortal:O09032
SMR:O09032 STRING:O09032 PhosphoSite:O09032 GeneID:432358
KEGG:rno:432358 UCSC:RGD:1560027 InParanoid:O09032 NextBio:696819
ArrayExpress:O09032 Genevestigator:O09032
GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 149 (57.5 bits), Expect = 4.4e-08, P = 4.4e-08
Identities = 42/163 (25%), Positives = 72/163 (44%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T E+ R+LF G + +L ++ G FV P +A A
Sbjct: 37 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 96
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + +T+KV+YA+ + NL+++ L K+L + F
Sbjct: 97 INTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQKELEQLFSQ 147
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 148 YG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 189
>UNIPROTKB|P26378 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CH471059
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0003730
eggNOG:COG0724 EMBL:AL645730 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 EMBL:M62843
EMBL:AY033995 EMBL:AY033996 EMBL:AY033997 EMBL:AY033998
EMBL:AK297338 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
EMBL:BC036071 IPI:IPI00395507 IPI:IPI00479625 IPI:IPI00607677
IPI:IPI00644588 IPI:IPI00978372 PIR:A40348 RefSeq:NP_001138246.1
RefSeq:NP_001138247.1 RefSeq:NP_001138248.1 RefSeq:NP_001138249.1
RefSeq:NP_068771.2 UniGene:Hs.213050 PDB:1FXL PDB:1G2E PDBsum:1FXL
PDBsum:1G2E ProteinModelPortal:P26378 SMR:P26378 IntAct:P26378
MINT:MINT-1471928 STRING:P26378 PhosphoSite:P26378 DMDM:223590202
PaxDb:P26378 PRIDE:P26378 Ensembl:ENST00000357083
Ensembl:ENST00000371823 Ensembl:ENST00000371824
Ensembl:ENST00000371827 Ensembl:ENST00000448907 GeneID:1996
KEGG:hsa:1996 UCSC:uc001crz.3 UCSC:uc001csa.3 UCSC:uc001csb.2
UCSC:uc001csc.3 CTD:1996 GeneCards:GC01P050513 HGNC:HGNC:3315
HPA:CAB004442 MIM:168360 neXtProt:NX_P26378 PharmGKB:PA27743
EvolutionaryTrace:P26378 GenomeRNAi:1996 NextBio:8073
ArrayExpress:P26378 Bgee:P26378 CleanEx:HS_ELAVL4
Genevestigator:P26378 GermOnline:ENSG00000162374 Uniprot:P26378
Length = 380
Score = 149 (57.5 bits), Expect = 4.6e-08, P = 4.6e-08
Identities = 42/163 (25%), Positives = 72/163 (44%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T E+ R+LF G + +L ++ G FV P +A A
Sbjct: 44 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 103
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + +T+KV+YA+ + NL+++ L K+L + F
Sbjct: 104 INTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQKELEQLFSQ 154
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 155 YG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 196
>UNIPROTKB|F1LRX3 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 IPI:IPI00808644
Ensembl:ENSRNOT00000067007 ArrayExpress:F1LRX3 Uniprot:F1LRX3
Length = 380
Score = 149 (57.5 bits), Expect = 4.6e-08, P = 4.6e-08
Identities = 42/163 (25%), Positives = 72/163 (44%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T E+ R+LF G + +L ++ G FV P +A A
Sbjct: 44 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 103
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + +T+KV+YA+ + NL+++ L K+L + F
Sbjct: 104 INTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQKELEQLFSQ 154
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 155 YG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 196
>UNIPROTKB|F1SDR6 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:CU633343 Ensembl:ENSSSCT00000008080 Uniprot:F1SDR6
Length = 608
Score = 152 (58.6 bits), Expect = 4.6e-08, P = 4.6e-08
Identities = 47/184 (25%), Positives = 84/184 (45%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDI-----RALFEQHGTVLDIELSMHSKNRNRGLAFVT 147
+RE E L N+ + H D+ + LF Q G +L +++ +RG FV
Sbjct: 178 EREAELGARALEFTNIYVKNLHVDVDERCLQDLFSQFGKILSVKVMRDDSGHSRGFGFVN 237
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYA--KIKKKNP----FPPVQPKPFATF---NLF 198
++A A+ ++ E GR L V A +++++N F ++ + NL+
Sbjct: 238 FEKHEDAQKAVTDMNGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLY 297
Query: 199 IANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ 258
+ NL + LR+ F G + SA+V+ S G+GFV F S + A A++
Sbjct: 298 VKNLDDSIDDEKLRKEFAPYGM-ITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMN 354
Query: 259 GKVI 262
G+++
Sbjct: 355 GRIV 358
Score = 115 (45.5 bits), Expect = 0.00077, P = 0.00077
Identities = 35/143 (24%), Positives = 71/143 (49%)
Query: 121 FEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179
F G +L I + + R+ G A++ P +A AL+ + +G+ +++ +++
Sbjct: 31 FSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMNFEVIKGQPIRIMWSQ-- 88
Query: 180 KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
++P + N+FI NL K L + F + G +++S +V+ D+ R G+
Sbjct: 89 -RDP----GLRKSGVGNVFIKNLEDSIDNKALYDTFSTFG-NILSCKVVCDDHGSR--GF 140
Query: 240 GFVSFKSKKVAETAISAFQGKVI 262
GFV F++ + A+ AI G ++
Sbjct: 141 GFVHFETHEAAQNAIRTMNGMLL 163
>UNIPROTKB|F1P856 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:SNSRNCP EMBL:AAEX03009733
Ensembl:ENSCAFT00000006315 Uniprot:F1P856
Length = 382
Score = 149 (57.5 bits), Expect = 4.7e-08, P = 4.7e-08
Identities = 42/163 (25%), Positives = 72/163 (44%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T E+ R+LF G + +L ++ G FV P +A A
Sbjct: 60 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 119
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + +T+KV+YA+ + NL+++ L K+L + F
Sbjct: 120 INTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQKELEQLFSQ 170
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 171 YG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 212
>UNIPROTKB|F1LRL1 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 TIGRFAMs:TIGR01661 IPI:IPI00763452
Ensembl:ENSRNOT00000064277 ArrayExpress:F1LRL1 Uniprot:F1LRL1
Length = 384
Score = 149 (57.5 bits), Expect = 4.7e-08, P = 4.7e-08
Identities = 42/163 (25%), Positives = 72/163 (44%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T E+ R+LF G + +L ++ G FV P +A A
Sbjct: 48 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 107
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + +T+KV+YA+ + NL+++ L K+L + F
Sbjct: 108 INTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQKELEQLFSQ 158
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 159 YG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 200
>UNIPROTKB|B1APY8 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AL583843 EMBL:AL592182
EMBL:AL731870 UniGene:Hs.213050 HGNC:HGNC:3315 OMA:SNSRNCP
IPI:IPI00513758 SMR:B1APY8 STRING:B1APY8 Ensembl:ENST00000371821
Uniprot:B1APY8
Length = 385
Score = 149 (57.5 bits), Expect = 4.7e-08, P = 4.7e-08
Identities = 42/163 (25%), Positives = 72/163 (44%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T E+ R+LF G + +L ++ G FV P +A A
Sbjct: 49 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 108
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + +T+KV+YA+ + NL+++ L K+L + F
Sbjct: 109 INTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQKELEQLFSQ 159
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 160 YG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 201
>MGI|MGI:107427 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 (Hu antigen D)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:107427 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 EMBL:AL627425 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
EMBL:D31953 EMBL:AF041341 IPI:IPI00229977 IPI:IPI00466120
PIR:JC2298 RefSeq:NP_034618.2 UniGene:Mm.3970
ProteinModelPortal:Q61701 SMR:Q61701 STRING:Q61701
PhosphoSite:Q61701 PaxDb:Q61701 PRIDE:Q61701
Ensembl:ENSMUST00000106597 GeneID:15572 KEGG:mmu:15572
InParanoid:A2A9R7 OMA:SNSRNCP NextBio:288560 Bgee:Q61701
Genevestigator:Q61701 GermOnline:ENSMUSG00000028546 Uniprot:Q61701
Length = 385
Score = 149 (57.5 bits), Expect = 4.7e-08, P = 4.7e-08
Identities = 42/163 (25%), Positives = 72/163 (44%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T E+ R+LF G + +L ++ G FV P +A A
Sbjct: 49 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 108
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + +T+KV+YA+ + NL+++ L K+L + F
Sbjct: 109 INTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQKELEQLFSQ 159
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 160 YG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 201
>UNIPROTKB|F1PVV1 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:AAEX03012413
Ensembl:ENSCAFT00000027494 Uniprot:F1PVV1
Length = 367
Score = 148 (57.2 bits), Expect = 5.6e-08, P = 5.6e-08
Identities = 39/163 (23%), Positives = 74/163 (45%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T ++ ++LF G + +L ++ G FV P++A A
Sbjct: 37 SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKA 96
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + + +T+KV+YA+ + NL+++ L K++ + F
Sbjct: 97 INTLNGLKLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMSQKEMEQLFSQ 147
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 148 YG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 189
>UNIPROTKB|Q14576 [details] [associations]
symbol:ELAVL3 "ELAV-like protein 3" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0007399 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
KO:K13208 EMBL:L26405 EMBL:AY036909 EMBL:AC008481 EMBL:BC014144
EMBL:D26158 IPI:IPI00031552 IPI:IPI00140449 RefSeq:NP_001411.2
RefSeq:NP_115657.2 UniGene:Hs.1701 ProteinModelPortal:Q14576
SMR:Q14576 IntAct:Q14576 MINT:MINT-1471958 STRING:Q14576
PhosphoSite:Q14576 DMDM:21264436 PaxDb:Q14576 PRIDE:Q14576
Ensembl:ENST00000359227 Ensembl:ENST00000438662 GeneID:1995
KEGG:hsa:1995 UCSC:uc002mrx.1 UCSC:uc002mry.1 CTD:1995
GeneCards:GC19M011562 HGNC:HGNC:3314 HPA:CAB013066 MIM:603458
neXtProt:NX_Q14576 PharmGKB:PA27742 InParanoid:Q14576 OMA:ARRYTGP
PhylomeDB:Q14576 ChiTaRS:ELAVL3 GenomeRNAi:1995 NextBio:8067
ArrayExpress:Q14576 Bgee:Q14576 CleanEx:HS_ELAVL3
Genevestigator:Q14576 GermOnline:ENSG00000196361 Uniprot:Q14576
Length = 367
Score = 148 (57.2 bits), Expect = 5.6e-08, P = 5.6e-08
Identities = 39/163 (23%), Positives = 74/163 (45%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T ++ ++LF G + +L ++ G FV P++A A
Sbjct: 37 SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKA 96
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + + +T+KV+YA+ + NL+++ L K++ + F
Sbjct: 97 INTLNGLKLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMSQKEMEQLFSQ 147
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 148 YG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 189
>UNIPROTKB|F1SA16 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:CU855518
Ensembl:ENSSSCT00000014872 Uniprot:F1SA16
Length = 367
Score = 148 (57.2 bits), Expect = 5.6e-08, P = 5.6e-08
Identities = 39/163 (23%), Positives = 74/163 (45%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T ++ ++LF G + +L ++ G FV P++A A
Sbjct: 37 SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKA 96
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + + +T+KV+YA+ + NL+++ L K++ + F
Sbjct: 97 INTLNGLKLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMSQKEMEQLFSQ 147
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 148 YG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 189
>ASPGD|ASPL0000075947 [details] [associations]
symbol:AN4978 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000084 eggNOG:COG0724
OMA:ANQPLEV OrthoDB:EOG4BP4N7 HOGENOM:HOG000276234
RefSeq:XP_662582.1 ProteinModelPortal:Q5B3A2 STRING:Q5B3A2
EnsemblFungi:CADANIAT00005417 GeneID:2872778 KEGG:ani:AN4978.2
Uniprot:Q5B3A2
Length = 296
Score = 146 (56.5 bits), Expect = 5.6e-08, P = 5.6e-08
Identities = 50/171 (29%), Positives = 76/171 (44%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATA 156
E S TRL N+P T +DI F HGT E+ + + G F+ +A
Sbjct: 3 EVSSTRLYLGNLPRNVTKQDIEEHFSTHGTGKITEIKLMN-----GFGFIEYEDAMDARD 57
Query: 157 ALNNLESYEFEGRTLKVNYAK-IKKKNPFP-----PVQPKPFAT-FNLFIANLSFEARAK 209
+ +F+G L V +A+ ++K FP P P+P T F + I+ L E +
Sbjct: 58 IVPAFHGSDFKGERLTVQFARGPRRKENFPVPTDRPNLPRPRRTIFRMIISGLP-ETSWQ 116
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
DL++F G DVV +E R G G V F++ +TA+ G+
Sbjct: 117 DLKDFARQSGLDVVYSET------GREPGRGIVEFETANDLKTAVEKLDGR 161
>UNIPROTKB|F1N4V6 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:DAAA02019487
IPI:IPI00710891 Ensembl:ENSBTAT00000019169 Uniprot:F1N4V6
Length = 368
Score = 148 (57.2 bits), Expect = 5.6e-08, P = 5.6e-08
Identities = 39/163 (23%), Positives = 74/163 (45%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T ++ ++LF G + +L ++ G FV P++A A
Sbjct: 37 SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKA 96
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + + +T+KV+YA+ + NL+++ L K++ + F
Sbjct: 97 INTLNGLKLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMSQKEMEQLFSQ 147
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 148 YG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 189
>DICTYBASE|DDB_G0284663 [details] [associations]
symbol:mrd1 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
[GO:0030515 "snoRNA binding" evidence=ISS] [GO:0006364 "rRNA
processing" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0284663 GO:GO:0005730
GenomeReviews:CM000153_GR GO:GO:0000166 GO:GO:0030515
Gene3D:3.30.70.330 GO:GO:0006364 eggNOG:COG0724 EMBL:AAFI02000070
KO:K14787 RefSeq:XP_638463.1 HSSP:Q8R3C6 ProteinModelPortal:Q54PB2
SMR:Q54PB2 STRING:Q54PB2 EnsemblProtists:DDB0233347 GeneID:8624714
KEGG:ddi:DDB_G0284663 OMA:YLEWAPR Uniprot:Q54PB2
Length = 895
Score = 116 (45.9 bits), Expect = 6.7e-08, Sum P(2) = 6.7e-08
Identities = 21/84 (25%), Positives = 49/84 (58%)
Query: 91 TEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMG 149
T++ E+ R+ +N+ +++ ED+ +F + G + +I + + + +++G+AF+
Sbjct: 351 TKEDEDVGESGRIFVRNLSYSTKEEDLEKVFSKFGKISEIHIPIDYDSKKSKGIAFILYL 410
Query: 150 SPDEATAALNNLESYEFEGRTLKV 173
P+ A ALN+++ F+GR + V
Sbjct: 411 IPENAVQALNDMDGKVFQGRLIHV 434
Score = 116 (45.9 bits), Expect = 0.00097, P = 0.00096
Identities = 26/99 (26%), Positives = 52/99 (52%)
Query: 84 SSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGL 143
+S ++ + + ++++ +N+P+ ST ++IR LF +G + + + +RG
Sbjct: 778 NSKQSIKSNGGQPNKPSSKIIIKNLPFESTIKEIRKLFTAYGEIQSVRIPKKPNGGHRGF 837
Query: 144 AFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKN 182
FV + +EA A+ L + F GR L + YA+ + KN
Sbjct: 838 GFVEFLTEEEAKNAMEALGNSHFYGRHLVLQYAE-QDKN 875
Score = 83 (34.3 bits), Expect = 6.7e-08, Sum P(2) = 6.7e-08
Identities = 26/88 (29%), Positives = 43/88 (48%)
Query: 169 RTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVI 228
R L N + K N P +P + I NL FE+ K++R+ F + G ++ S +
Sbjct: 773 RELPENSKQSIKSNGGQPNKPSS----KIIIKNLPFESTIKEIRKLFTAYG-EIQSVRIP 827
Query: 229 FHDNPRRSAGYGFVSFKSKKVAETAISA 256
N G+GFV F +++ A+ A+ A
Sbjct: 828 KKPNGGHR-GFGFVEFLTEEEAKNAMEA 854
Score = 60 (26.2 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 20/71 (28%), Positives = 33/71 (46%)
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSA-----GYGFVSFKSKKVAE 251
++I NL+++ + L F S D V+ + NP+ + G+GF+ F SK+ A
Sbjct: 680 VYIKNLNWKTTNETLVGKFKSLK-DYVNVNIATKANPKNPSERLPCGFGFIEFSSKQGAY 738
Query: 252 TAISAFQGKVI 262
I G I
Sbjct: 739 ECIKKLNGSSI 749
>UNIPROTKB|Q6GLB5 [details] [associations]
symbol:elavl1 "ELAV-like protein 1" species:8364 "Xenopus
(Silurana) tropicalis" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0005938 "cell cortex" evidence=ISS]
[GO:0007369 "gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA
binding" evidence=ISS] [GO:0008298 "intracellular mRNA
localization" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0051259 "protein oligomerization" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0005634 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 GO:GO:0007369 eggNOG:COG0724
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:BC074585
RefSeq:NP_001005461.1 UniGene:Str.2596 ProteinModelPortal:Q6GLB5
SMR:Q6GLB5 STRING:Q6GLB5 PRIDE:Q6GLB5 GeneID:448062 KEGG:xtr:448062
Xenbase:XB-GENE-481800 InParanoid:Q6GLB5 Uniprot:Q6GLB5
Length = 326
Score = 146 (56.5 bits), Expect = 7.3e-08, P = 7.3e-08
Identities = 40/165 (24%), Positives = 75/165 (45%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEA 154
++ +T L+ +P T +++R+LF G V +L + G FV + +A
Sbjct: 15 DDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDA 74
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
A+N L + +T+KV+ A+ ++ NL+I+ L KD+ +
Sbjct: 75 ERAINTLNGLRLQSKTIKVSVARPSSES---------IKDANLYISGLPRTMTQKDVEDM 125
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
F+ G ++++ V+ S G F+ F + AE AI++F G
Sbjct: 126 FLPFG-RIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNG 169
>TAIR|locus:2115169 [details] [associations]
symbol:AT4G36960 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 KO:K14411
HSSP:Q14103 UniGene:At.4642 UniGene:At.4643 EMBL:AY048286
EMBL:BT000573 IPI:IPI00527793 RefSeq:NP_001154290.1
RefSeq:NP_568011.1 ProteinModelPortal:Q94AC3 SMR:Q94AC3
IntAct:Q94AC3 PaxDb:Q94AC3 PRIDE:Q94AC3 EnsemblPlants:AT4G36960.1
EnsemblPlants:AT4G36960.2 GeneID:829850 KEGG:ath:AT4G36960
TAIR:At4g36960 HOGENOM:HOG000070627 InParanoid:Q94AC3 OMA:EITDLYM
PhylomeDB:Q94AC3 ProtClustDB:CLSN2689792 Genevestigator:Q94AC3
Uniprot:Q94AC3
Length = 379
Score = 117 (46.2 bits), Expect = 8.5e-08, Sum P(2) = 8.5e-08
Identities = 28/108 (25%), Positives = 55/108 (50%)
Query: 87 AAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAF 145
A E R+ TR+ +P + + D R+ FE++G + D+ + ++ ++RG+ F
Sbjct: 77 ATPKEEMRQPAKKVTRIFVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQHRGIGF 136
Query: 146 VTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA 193
+T S D + ++++ G T+ V+ A K++ PP +P P A
Sbjct: 137 ITFSSADSVEDLME--DTHDLGGTTVAVDRAT-PKEDDHPP-RPPPVA 180
Score = 116 (45.9 bits), Expect = 0.00029, P = 0.00029
Identities = 40/152 (26%), Positives = 66/152 (43%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
+LV +PW + ++ + G + D I + S R+RG +VT S ++A N
Sbjct: 4 KLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAK---NA 60
Query: 161 LESYEFEG-RTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEG 219
L+ F G R L+V A K++ QP T +F+A + D R F G
Sbjct: 61 LKGEHFLGNRILEVKVATPKEEMR----QPAKKVT-RIFVARIPSSVSESDFRSHFERYG 115
Query: 220 WDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAE 251
++ + N ++ G GF++F S E
Sbjct: 116 -EITDLYMPKDYNSKQHRGIGFITFSSADSVE 146
Score = 71 (30.1 bits), Expect = 8.5e-08, Sum P(2) = 8.5e-08
Identities = 20/57 (35%), Positives = 31/57 (54%)
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSA--GYGFVSFKSKKVAE 251
+F+ L EA DLR++F G + A + +P+RS G+GFV+F VA+
Sbjct: 242 IFVGRLPQEASVDDLRDYFGRFG-HIQDAYI--PKDPKRSGHRGFGFVTFAENGVAD 295
>ZFIN|ZDB-GENE-030131-6154 [details] [associations]
symbol:hnrnpa0b "heterogeneous nuclear
ribonucleoprotein A0b" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-6154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12894
EMBL:BC066434 IPI:IPI00507638 RefSeq:NP_999871.1 UniGene:Dr.35374
ProteinModelPortal:Q6NYW8 SMR:Q6NYW8 STRING:Q6NYW8 PRIDE:Q6NYW8
GeneID:334222 KEGG:dre:334222 CTD:334222 InParanoid:Q6NYW8
OrthoDB:EOG4M65KN NextBio:20810313 ArrayExpress:Q6NYW8 Bgee:Q6NYW8
Uniprot:Q6NYW8
Length = 314
Score = 145 (56.1 bits), Expect = 8.6e-08, P = 8.6e-08
Identities = 40/144 (27%), Positives = 71/144 (49%)
Query: 112 STHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYEFEGRT 170
+T++ +R+ FEQ G + D + + + R+R FVT + +EA AA+ + +G+
Sbjct: 19 TTNDGLRSYFEQFGNLTDCVVVQNDQLQRSRCFGFVTYSTSEEADAAMA-ARPHVVDGKN 77
Query: 171 LKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFH 230
++V A ++ P K +F+ L + KDL EFF G + +EVI
Sbjct: 78 VEVKRAVAREDAGRPEALAK---VKKIFVGGLKDDIEEKDLTEFFSQFGM-IEKSEVITD 133
Query: 231 DNPRRSAGYGFVSFKSKKVAETAI 254
+ + G+GFV F+ A+ A+
Sbjct: 134 KDTGKKRGFGFVHFEDNDSADKAV 157
>CGD|CAL0005232 [details] [associations]
symbol:orf19.6090 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0005232 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AACQ01000036 EMBL:AACQ01000035 GO:GO:0044011
eggNOG:COG0724 KO:K11294 RefSeq:XP_718946.1 RefSeq:XP_719050.1
ProteinModelPortal:Q5AB84 STRING:Q5AB84 GeneID:3639341
GeneID:3639464 KEGG:cal:CaO19.13509 KEGG:cal:CaO19.6090
Uniprot:Q5AB84
Length = 400
Score = 147 (56.8 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 50/191 (26%), Positives = 81/191 (42%)
Query: 82 DSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH-SKNRN 140
+ SA ++ L + W ++ FE G V+ + M + ++
Sbjct: 149 EEESAPVKKSKPAASTEEPATLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKS 208
Query: 141 RGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK----KKN-----PFPPVQPKP 191
RG +V S A AL ++ E +GR + ++ + K K N + Q P
Sbjct: 209 RGYGYVDFESKSAAEKALEEMQGKEIDGRPINLDMSTGKPHASKSNNDRAKQYGDSQSPP 268
Query: 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAE 251
T LFI NLSF A +L F G +V+S V H + ++ G+G+V F S A+
Sbjct: 269 SDT--LFIGNLSFNANRDNLFNVFGEYG-NVISCRVPTHPDTQQPKGFGYVQFSSVDEAK 325
Query: 252 TAISAFQGKVI 262
A+ A G+ I
Sbjct: 326 AALEAMNGEYI 336
>UNIPROTKB|Q5AB84 [details] [associations]
symbol:NSR1 "Potential nuclear localization sequence
binding protein Nsr1p" species:237561 "Candida albicans SC5314"
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0005232
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000036
EMBL:AACQ01000035 GO:GO:0044011 eggNOG:COG0724 KO:K11294
RefSeq:XP_718946.1 RefSeq:XP_719050.1 ProteinModelPortal:Q5AB84
STRING:Q5AB84 GeneID:3639341 GeneID:3639464 KEGG:cal:CaO19.13509
KEGG:cal:CaO19.6090 Uniprot:Q5AB84
Length = 400
Score = 147 (56.8 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 50/191 (26%), Positives = 81/191 (42%)
Query: 82 DSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH-SKNRN 140
+ SA ++ L + W ++ FE G V+ + M + ++
Sbjct: 149 EEESAPVKKSKPAASTEEPATLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKS 208
Query: 141 RGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK----KKN-----PFPPVQPKP 191
RG +V S A AL ++ E +GR + ++ + K K N + Q P
Sbjct: 209 RGYGYVDFESKSAAEKALEEMQGKEIDGRPINLDMSTGKPHASKSNNDRAKQYGDSQSPP 268
Query: 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAE 251
T LFI NLSF A +L F G +V+S V H + ++ G+G+V F S A+
Sbjct: 269 SDT--LFIGNLSFNANRDNLFNVFGEYG-NVISCRVPTHPDTQQPKGFGYVQFSSVDEAK 325
Query: 252 TAISAFQGKVI 262
A+ A G+ I
Sbjct: 326 AALEAMNGEYI 336
>UNIPROTKB|G4MY43 [details] [associations]
symbol:MGG_01268 "Nuclear localization sequence binding
protein" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001232 KO:K11294 RefSeq:XP_003714181.1
ProteinModelPortal:G4MY43 EnsemblFungi:MGG_01268T0 GeneID:2679652
KEGG:mgr:MGG_01268 Uniprot:G4MY43
Length = 486
Score = 148 (57.2 bits), Expect = 9.5e-08, P = 9.5e-08
Identities = 49/190 (25%), Positives = 83/190 (43%)
Query: 82 DSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRN 140
+ A A T+ E + T V N+ W + F+ GTV ++ R+
Sbjct: 221 EEEEAPAKKTKTEESDKPSTLFVG-NLSWNVDDAMLAEEFKFCGTVTSARVITDRESGRS 279
Query: 141 RGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA--KIKKKNPFPPVQPKPFA-TFN- 196
+G +V +P+EA A + +GR +KV+++ K N + K + T +
Sbjct: 280 KGFGYVDFATPEEAEKAHGEKQGAFIDGREIKVDFSTGKATNSNDAAGARAKKYGDTVSP 339
Query: 197 ----LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAET 252
LF+ NL F+A + FF SE +V S + R G+G+V+F S + A++
Sbjct: 340 ESDTLFVGNLPFDADEDSVGAFF-SEVAEVKSLRLPTEQESGRRKGFGYVTFNSVEDAKS 398
Query: 253 AISAFQGKVI 262
A G+ I
Sbjct: 399 AFEQLNGQSI 408
>ZFIN|ZDB-GENE-030131-6986 [details] [associations]
symbol:ncl "nucleolin" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-6986 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 InterPro:IPR017859 PRINTS:PR01503
EMBL:BC162643 IPI:IPI00485582 UniGene:Dr.75207
ProteinModelPortal:B3DH54 STRING:B3DH54 ArrayExpress:B3DH54
Uniprot:B3DH54
Length = 708
Score = 150 (57.9 bits), Expect = 9.9e-08, P = 9.9e-08
Identities = 46/182 (25%), Positives = 87/182 (47%)
Query: 90 NTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMG 149
N+++ ++E L +N+P++ T +D+R +F+Q +DI + M + +RG+A++
Sbjct: 369 NSQENKKERDARTLFVKNLPYSITQDDLREIFDQ---AVDIRVPMGNTGTSRGIAYIEFK 425
Query: 150 SPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAK 209
+ A AL + + +GR++ V++ K + + P A+ L + NL+F A
Sbjct: 426 TEAIAEKALEEAQGSDVQGRSIIVDFTGDKSRQGG---RGAPSASKVLVVNNLAFSASED 482
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIAL 269
L+ F VS + N R GY FV F++ + ++ A+ I I L
Sbjct: 483 SLQSVFEK----AVSIRI--PQNNGRPKGYAFVEFENVEDSKEALENCNNTDIEGRSIRL 536
Query: 270 SY 271
Y
Sbjct: 537 EY 538
Score = 125 (49.1 bits), Expect = 7.0e-05, P = 7.0e-05
Identities = 38/169 (22%), Positives = 85/169 (50%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLE 162
LV N+ ++++ + ++++FE+ + I + ++ R +G AFV + +++ AL N
Sbjct: 470 LVVNNLAFSASEDSLQSVFEK---AVSIRIPQNN-GRPKGYAFVEFENVEDSKEALENCN 525
Query: 163 SYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDV 222
+ + EGR++++ Y++ ++ + T LF+ LS + + L++ F +G
Sbjct: 526 NTDIEGRSIRLEYSQNDRERGGGG-RGNSGPTKTLFVKGLSDDTTDQTLKDSF--DG--A 580
Query: 223 VSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271
++A + + S G+GFV F +++ + A A I + L Y
Sbjct: 581 IAARIATDRDTGSSKGFGFVDFDNEQDCKAAKEAMDDGEIDGNKVTLDY 629
>GENEDB_PFALCIPARUM|PF13_0122 [details] [associations]
symbol:PF13_0122 "cyclophilin, putative"
species:5833 "Plasmodium falciparum" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003755 "peptidyl-prolyl cis-trans isomerase
activity" evidence=ISS] [GO:0006457 "protein folding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K01802 EMBL:AL844509 HOGENOM:HOG000276232
GO:GO:0003755 RefSeq:XP_002809024.1 ProteinModelPortal:C0H5C7
EnsemblProtists:PF13_0122:mRNA GeneID:814093 KEGG:pfa:PF13_0122
EuPathDB:PlasmoDB:PF3D7_1320900 ProtClustDB:CLSZ2433376
Uniprot:C0H5C7
Length = 125
Score = 126 (49.4 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 25/78 (32%), Positives = 45/78 (57%)
Query: 111 TSTHEDIRALFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNNLESYEFEGR 169
T + + +F G + +IE+ ++ + +NRG AFV D+A AL N+ ++E G+
Sbjct: 18 TIDEKSLYDIFSSFGDIRNIEVPLNMTTKKNRGFAFVEYVEVDDAKHALYNMNNFELNGK 77
Query: 170 TLKVNYAKIKKKNPFPPV 187
+ VNY+K KK + + P+
Sbjct: 78 RIHVNYSKTKKADHYKPI 95
>UNIPROTKB|C0H5C7 [details] [associations]
symbol:PF13_0122 "RRM containing cyclophilin" species:36329
"Plasmodium falciparum 3D7" [GO:0000413 "protein peptidyl-prolyl
isomerization" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003755 "peptidyl-prolyl cis-trans isomerase
activity" evidence=ISS] [GO:0006457 "protein folding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K01802 EMBL:AL844509 HOGENOM:HOG000276232
GO:GO:0003755 RefSeq:XP_002809024.1 ProteinModelPortal:C0H5C7
EnsemblProtists:PF13_0122:mRNA GeneID:814093 KEGG:pfa:PF13_0122
EuPathDB:PlasmoDB:PF3D7_1320900 ProtClustDB:CLSZ2433376
Uniprot:C0H5C7
Length = 125
Score = 126 (49.4 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 25/78 (32%), Positives = 45/78 (57%)
Query: 111 TSTHEDIRALFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNNLESYEFEGR 169
T + + +F G + +IE+ ++ + +NRG AFV D+A AL N+ ++E G+
Sbjct: 18 TIDEKSLYDIFSSFGDIRNIEVPLNMTTKKNRGFAFVEYVEVDDAKHALYNMNNFELNGK 77
Query: 170 TLKVNYAKIKKKNPFPPV 187
+ VNY+K KK + + P+
Sbjct: 78 RIHVNYSKTKKADHYKPI 95
>TAIR|locus:2039590 [details] [associations]
symbol:AT2G27330 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 EMBL:BT025704
IPI:IPI00525470 RefSeq:NP_565646.2 UniGene:At.38782
ProteinModelPortal:Q1ECN0 SMR:Q1ECN0 IntAct:Q1ECN0
EnsemblPlants:AT2G27330.1 GeneID:817276 KEGG:ath:AT2G27330
TAIR:At2g27330 eggNOG:NOG290837 InParanoid:Q1ECN0 OMA:IMDKIRC
PhylomeDB:Q1ECN0 ProtClustDB:CLSN2918107 Genevestigator:Q1ECN0
Uniprot:Q1ECN0
Length = 116
Score = 126 (49.4 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 31/93 (33%), Positives = 51/93 (54%)
Query: 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATA 156
+S T L + + ++ST E + F Q+G VL +++ M + R +G A+VT S +EA
Sbjct: 19 FSST-LFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEK 77
Query: 157 ALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQP 189
AL L + +GR + ++ K K NP P +P
Sbjct: 78 ALLELNAQLVDGRVVILDTTKAAKHNP-PDTKP 109
>ZFIN|ZDB-GENE-990415-245 [details] [associations]
symbol:elavl1 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 1 (Hu antigen R)" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-245 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:BX649372 IPI:IPI00817195
PRIDE:F1QM02 Ensembl:ENSDART00000146123 ArrayExpress:F1QM02
Bgee:F1QM02 Uniprot:F1QM02
Length = 340
Score = 145 (56.1 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 42/163 (25%), Positives = 73/163 (44%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P + +++R+LF G V +L + G FV +P++A A
Sbjct: 32 SKTNLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNPNDAERA 91
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
++ L + +T+KV+YA+ + NL+I+ L KD+ E F
Sbjct: 92 ISTLNGLRLQSKTIKVSYARPSSDS---------IKDANLYISGLPKTMTQKDVEEMFGR 142
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
G ++++ V+ S G F+ F + AE AI G+
Sbjct: 143 YG-RIINSRVLVDQASGLSRGVAFIRFDKRAEAEDAIKDLNGQ 184
>UNIPROTKB|E1BNB4 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:DAAA02036735
EMBL:DAAA02036734 IPI:IPI00715420 ProteinModelPortal:E1BNB4
Ensembl:ENSBTAT00000022412 OMA:VMTESSH Uniprot:E1BNB4
Length = 618
Score = 149 (57.5 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 48/184 (26%), Positives = 84/184 (45%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDI-----RALFEQHGTVLDIELSMHSKNRNRGLAFVT 147
+RE E + N+ + H D+ + LF Q G +L +++ +RG FV
Sbjct: 178 EREVELGARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVN 237
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYA--KIKKKNP----FPPVQPKPFATF---NLF 198
+EA A+ N+ E GR L V A +++++N F ++ + NL+
Sbjct: 238 FEKHEEAQKAVVNMNGREVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLY 297
Query: 199 IANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ 258
+ NL + LR+ F G + SA+V+ S G+GFV F S + A A++
Sbjct: 298 VKNLDDSIDDEKLRKEFSPYGV-ITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMN 354
Query: 259 GKVI 262
G+++
Sbjct: 355 GRIV 358
Score = 117 (46.2 bits), Expect = 0.00047, P = 0.00047
Identities = 35/143 (24%), Positives = 72/143 (50%)
Query: 121 FEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179
F G +L I + + R+ G A++ P +A AL+ + +G+ +++ +++
Sbjct: 31 FSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMNFEVIKGQPIRIMWSQ-- 88
Query: 180 KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
++P + N+FI NL K L + F + G +++S +V+ ++ R G+
Sbjct: 89 -RDP----GLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG-NILSCKVVCDEHGSR--GF 140
Query: 240 GFVSFKSKKVAETAISAFQGKVI 262
GFV F++ + A+ AIS G ++
Sbjct: 141 GFVHFETHEAAQNAISTMNGMLL 163
>CGD|CAL0001392 [details] [associations]
symbol:orf19.3037 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 CGD:CAL0001392
GO:GO:0005634 GO:GO:0005737 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0006417 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HSSP:P11940
RefSeq:XP_721264.1 RefSeq:XP_721535.1 ProteinModelPortal:Q5AI15
SMR:Q5AI15 STRING:Q5AI15 PRIDE:Q5AI15 GeneID:3636891 GeneID:3637079
KEGG:cal:CaO19.10555 KEGG:cal:CaO19.3037 Uniprot:Q5AI15
Length = 629
Score = 149 (57.5 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 47/188 (25%), Positives = 84/188 (44%)
Query: 89 VNTEQREEEYSK-----TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGL 143
++ + RE ++ + T + +N+ + E LF G + I L +++G
Sbjct: 216 ISKKDRESKFEEMKANFTNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQDGKSKGF 275
Query: 144 AFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK------KNPFPPVQPKPFATF-- 195
FV + A A+ L E G+ + V A+ K+ K + V+ + A +
Sbjct: 276 GFVNFEDHESAVKAVEELNDKEINGQKIYVGRAQKKRERLEELKKQYEAVRLEKLAKYQG 335
Query: 196 -NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAI 254
NLF+ NL ++ L E F G + SA+V+ D +S G+GFV F + + A AI
Sbjct: 336 VNLFVKNLDDTIDSEKLEEEFKPFG-TITSAKVMV-DEAGKSKGFGFVCFTTPEEATKAI 393
Query: 255 SAFQGKVI 262
+ ++I
Sbjct: 394 TEMNTRMI 401
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 149 (57.5 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 40/157 (25%), Positives = 79/157 (50%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF ++G L +++ +++G FV+ ++A A+ + + G+ + V
Sbjct: 205 ERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVG 264
Query: 175 YA--KIKK----KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A K+++ K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
+V+ D RS G+GFV F S + A A++ G+++
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 118 (46.6 bits), Expect = 0.00037, P = 0.00037
Identities = 39/143 (27%), Positives = 66/143 (46%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N ++G AFV + D A A+ + R + V K +K
Sbjct: 119 FSAFGNILSCKV-VCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 181 KNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ + K F N++I N + + L+E F G +S +V+ D +S G+
Sbjct: 178 EREAELGAKAKEFT--NVYIKNFGDDMDDERLKELFSKYG-KTLSVKVMT-DPTGKSKGF 233
Query: 240 GFVSFKSKKVAETAISAFQGKVI 262
GFVSF+ + A A+ GK I
Sbjct: 234 GFVSFEKHEDANKAVEEMNGKDI 256
>UNIPROTKB|H0YBQ4 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519596
Uniprot:H0YBQ4
Length = 258
Score = 141 (54.7 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 46/188 (24%), Positives = 89/188 (47%)
Query: 94 REEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDE 153
R +E+ T + +N E ++ LF + G L +++ +++G FV+ ++
Sbjct: 19 RAKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 76
Query: 154 ATAALNNLESYEFEGRTLKVNYA--KIKK----KNPFPPVQPKPFATF---NLFIANLSF 204
A A++ + E G+ + V A K+++ K F ++ + NL++ NL
Sbjct: 77 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 136
Query: 205 EARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC 264
+ LR+ F G + SA+V+ RS G+GFV F S + A A++ G+++
Sbjct: 137 GIDDERLRKEFSPFG-TITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVAT 193
Query: 265 --LVIALS 270
L +AL+
Sbjct: 194 KPLYVALA 201
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 148 (57.2 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 43/184 (23%), Positives = 88/184 (47%)
Query: 92 EQREEEYSKTRLV---AQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTM 148
++R+ +KT+ +N+ ++T +D++ F ++G + + + +++G FV
Sbjct: 203 QERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNF 262
Query: 149 GSPDEATAALNNLESYEFE------GRTLKVNYA----KIKKKNPFPPVQPKPFATFNLF 198
+ D+A A+ +L ++F+ GR K + +++ + K F + NL+
Sbjct: 263 ENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADK-FQSSNLY 321
Query: 199 IANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ 258
+ NL + L+E F G V++ + D S G GFV+F + + A A+S
Sbjct: 322 VKNLDPSISDEKLKEIFSPFG--TVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLS 379
Query: 259 GKVI 262
GK+I
Sbjct: 380 GKMI 383
Score = 146 (56.5 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 46/180 (25%), Positives = 83/180 (46%)
Query: 84 SSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRG 142
+SA A + ++ T L ++ + T + F Q GTV+ + + R+ G
Sbjct: 19 TSAPATSGGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLG 78
Query: 143 LAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANL 202
+V +P +A A+ L G+ ++V Y+ ++P + N+FI NL
Sbjct: 79 YGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSH---RDP----SVRRSGAGNIFIKNL 131
Query: 203 SFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
K L + F S G ++VS +V D+ +S GYGFV + +++ A+ AI G ++
Sbjct: 132 DESIDHKALHDTFSSFG-NIVSCKVAV-DSSGQSKGYGFVQYANEESAQKAIEKLNGMLL 189
>UNIPROTKB|Q1JQ73 [details] [associations]
symbol:elavl1-a "ELAV-like protein 1-A" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005938
"cell cortex" evidence=IDA] [GO:0007369 "gastrulation"
evidence=IMP] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
[GO:0008298 "intracellular mRNA localization" evidence=IMP]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA;IPI]
[GO:0031440 "regulation of mRNA 3'-end processing" evidence=IC]
[GO:0048255 "mRNA stabilization" evidence=IC;IGI] [GO:0051259
"protein oligomerization" evidence=IDA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
KO:K13208 EMBL:U17596 EMBL:BC116459 PIR:I51675
RefSeq:NP_001084078.1 UniGene:Xl.49136 ProteinModelPortal:Q1JQ73
SMR:Q1JQ73 MINT:MINT-274235 PRIDE:Q1JQ73 GeneID:399292
KEGG:xla:399292 CTD:399292 Xenbase:XB-GENE-6254178 GO:GO:0031440
Uniprot:Q1JQ73
Length = 337
Score = 143 (55.4 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 43/176 (24%), Positives = 79/176 (44%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIEL------------SMHSKNRNRGL 143
++ +T L+ +P T +++R+LF G V +L S SK + G
Sbjct: 15 DDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGFEMRSSSLSKGHSLGY 74
Query: 144 AFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLS 203
FV + +A A+N L + +T+KV++A+ ++ NL+I+ L
Sbjct: 75 GFVNYLNAKDAERAINTLNGLRLQSKTIKVSFARPSSES---------IKDANLYISGLP 125
Query: 204 FEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
KD+ + F+ G ++++ V+ S G F+ F + AE AI++F G
Sbjct: 126 RTMTQKDVEDMFLPFG-HIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNG 180
>ZFIN|ZDB-GENE-030131-2249 [details] [associations]
symbol:hnrnpa0a "heterogeneous nuclear
ribonucleoprotein A0a" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-2249
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4W6NX4
EMBL:BC066672 IPI:IPI00995382 RefSeq:NP_997810.1 UniGene:Dr.75559
ProteinModelPortal:Q6NYB0 SMR:Q6NYB0 STRING:Q6NYB0 PRIDE:Q6NYB0
GeneID:323529 KEGG:dre:323529 CTD:323529 InParanoid:Q6NYB0
NextBio:20808302 ArrayExpress:Q6NYB0 Bgee:Q6NYB0 Uniprot:Q6NYB0
Length = 305
Score = 142 (55.0 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 47/165 (28%), Positives = 76/165 (46%)
Query: 91 TEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMG 149
T Q E + K + NV +T + +R FEQ+G + D + + + R+R FVT
Sbjct: 2 TAQMENQLCKLFVGGLNVQ--TTDDGLRNHFEQYGKLTDCVVVQNQQLKRSRCFGFVTYS 59
Query: 150 SPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAK 209
SPDEA +A++ + +G +++ A ++ P K +FI L +
Sbjct: 60 SPDEADSAMS-ARPHILDGNNVELKRAVAREDAGKPEALAK---VKKIFIGGLKDDIEED 115
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAI 254
LR+ F G V AEVI + G+GFV F+ A+ A+
Sbjct: 116 HLRDCFSQFG-AVEKAEVITDKETGKKRGFGFVYFEDNDSADKAV 159
>ASPGD|ASPL0000076731 [details] [associations]
symbol:AN4865 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000084 eggNOG:COG0724
KO:K11294 OrthoDB:EOG422DTZ RefSeq:XP_662469.1
ProteinModelPortal:Q5B3L5 STRING:Q5B3L5
EnsemblFungi:CADANIAT00005540 GeneID:2872664 KEGG:ani:AN4865.2
HOGENOM:HOG000195050 OMA:SARIMTE Uniprot:Q5B3L5
Length = 524
Score = 146 (56.5 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 47/189 (24%), Positives = 79/189 (41%)
Query: 87 AAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFV 146
AA + + + EE + L N+ W T E + FEQ G + ++ R+RG +V
Sbjct: 263 AAASKKSKTEEGASANLFVGNLSWNVTEEWLHQEFEQFGELSARIMTERDTGRSRGFGYV 322
Query: 147 TMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNP----FPPVQPKPFATFN------ 196
+ +A A ++ +E +GR + ++YA + N F +F
Sbjct: 323 EFTNAADAAKAYEAMKEHEIDGRKINLDYATGRPANKDQGGFKERAQNRARSFGDQTSPE 382
Query: 197 ---LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETA 253
LF+ NL F A + E F +G +V+ + R G+G+V + S A A
Sbjct: 383 SDTLFVGNLPFSANEDSVHEVFGPQG-NVLGIRLPTDMESGRPKGFGYVQYSSVDEARKA 441
Query: 254 ISAFQGKVI 262
+ QG I
Sbjct: 442 YNELQGAEI 450
>TAIR|locus:2160437 [details] [associations]
symbol:AT5G41690 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 EMBL:AK221749
IPI:IPI00517520 RefSeq:NP_568594.3 UniGene:At.55306
ProteinModelPortal:Q56XC6 SMR:Q56XC6 EnsemblPlants:AT5G41690.1
GeneID:834172 KEGG:ath:AT5G41690 TAIR:At5g41690
HOGENOM:HOG000131709 InParanoid:Q56XC6 OMA:WHERESL PhylomeDB:Q56XC6
ProtClustDB:CLSN2679886 Genevestigator:Q56XC6 Uniprot:Q56XC6
Length = 567
Score = 103 (41.3 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 37/141 (26%), Positives = 61/141 (43%)
Query: 46 FPLSSSPFHAYTFPITPKKVSPFVFHFSATTQDPFVDSSSAAAVNTEQREEEYSKTRLVA 105
+ L ++P I KKV+ FS D V S A + + + KT VA
Sbjct: 14 YGLEANPILKRHKKINKKKVTTKAIAFSLQQNDLLVTKSDQANLISVKEAAVREKTLFVA 73
Query: 106 QNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYE 165
N+P+ + +I F++ G V+ ++L ++ K + G FV S +EA AL
Sbjct: 74 -NLPYETKIPNIIDFFKKVGEVVRVQLIVNLKGKLVGCGFVEFASVNEAEEALQKKNGEC 132
Query: 166 FEGRTLKVNYAKIKKKNPFPP 186
+ + ++ A KK PP
Sbjct: 133 LDNNKIFLDVAN-KKATYLPP 152
Score = 88 (36.0 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 22/66 (33%), Positives = 36/66 (54%)
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
LF+ANLS + + D+ +FF G +VVS ++ + + GYGFV F S + A+
Sbjct: 187 LFVANLSPQTKISDIFDFFNCVG-EVVSIRLMVNHEGKH-VGYGFVEFASADETKKALEN 244
Query: 257 FQGKVI 262
G+ +
Sbjct: 245 KNGEYL 250
Score = 71 (30.1 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 23/78 (29%), Positives = 36/78 (46%)
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
LF+ANLS + + +FF + +VV +I + G GFV F S A+ A+
Sbjct: 438 LFVANLSPRTKISHIIKFF-KDVAEVVRVRLIVNHRGEH-VGCGFVEFASVNEAQKALQK 495
Query: 257 FQGKVIMCLVIALSYLYL 274
G+ + I L + L
Sbjct: 496 MNGENLRSREIFLDVVEL 513
Score = 63 (27.2 bits), Expect = 7.3e-05, Sum P(2) = 7.3e-05
Identities = 19/66 (28%), Positives = 31/66 (46%)
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
LF+A+LS + + FF G +VV +I + + G FV F S A+ A+
Sbjct: 310 LFVAHLSRKTEITHIINFFKDVG-EVVHVRLILNHTGKH-VGCAFVEFGSANEAKMALET 367
Query: 257 FQGKVI 262
G+ +
Sbjct: 368 KNGEYL 373
>UNIPROTKB|E1BWJ7 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 GeneTree:ENSGT00640000091232
EMBL:AADN02019326 EMBL:AADN02019327 IPI:IPI00570679
RefSeq:XP_417367.2 ProteinModelPortal:E1BWJ7
Ensembl:ENSGALT00000006565 GeneID:419189 KEGG:gga:419189
OMA:QTISARV NextBio:20822287 Uniprot:E1BWJ7
Length = 632
Score = 146 (56.5 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 49/195 (25%), Positives = 93/195 (47%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHED-----IRALFEQHGTVLDIELSMHSKNRNRGLAFV 146
++RE E+ + NV + +D +R +F + G L +++ M R++G FV
Sbjct: 177 KEREAEFGARAMEFTNVYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDHTGRSKGFGFV 236
Query: 147 TMGSPDEATAALNNLESYEFEGRTLKVNYA--KIKK----KNPFPPVQPKPFATF---NL 197
+EA A+ ++ E GR + V A ++++ K F ++ + + + NL
Sbjct: 237 NFEKHEEAQKAVADMNGKEINGRMVYVGRAQKRLERQSELKRKFEQMKQERVSRYQGVNL 296
Query: 198 FIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAF 257
++ NL + LR+ F G + SA+V+ S G+GFV F S + A A++
Sbjct: 297 YVKNLDDGIDDERLRKEFSPYG-TITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEM 353
Query: 258 QGKVIMC--LVIALS 270
G+++ L +AL+
Sbjct: 354 NGRIVSTKPLYVALA 368
Score = 126 (49.4 bits), Expect = 4.7e-05, P = 4.7e-05
Identities = 38/142 (26%), Positives = 67/142 (47%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N +RG FV + + AT A+ + R + V + K +K
Sbjct: 119 FSAFGNILSCKV-VCDENGSRGHGFVHFETQEAATRAIQTMNGMLLNDRKVFVGHFKSRK 177
Query: 181 KNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYG 240
+ + N++I N + LRE F G +S +V+ D+ RS G+G
Sbjct: 178 ERE-AEFGARAMEFTNVYIKNFGDDMDDNRLREIFSRFG-KTLSVKVMM-DHTGRSKGFG 234
Query: 241 FVSFKSKKVAETAISAFQGKVI 262
FV+F+ + A+ A++ GK I
Sbjct: 235 FVNFEKHEEAQKAVADMNGKEI 256
Score = 118 (46.6 bits), Expect = 0.00037, P = 0.00037
Identities = 36/143 (25%), Positives = 71/143 (49%)
Query: 121 FEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179
F G +L I + + R+ G A++ P +A AL+ + +GR +++ +++
Sbjct: 31 FSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERALDTMNFEVIKGRPVRIMWSQ-- 88
Query: 180 KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
++P + N+FI NL K L + F + G +++S +V+ +N R G+
Sbjct: 89 -RDP----GLRKSGVGNVFIKNLDDSIDNKALYDTFSAFG-NILSCKVVCDENGSR--GH 140
Query: 240 GFVSFKSKKVAETAISAFQGKVI 262
GFV F++++ A AI G ++
Sbjct: 141 GFVHFETQEAATRAIQTMNGMLL 163
>UNIPROTKB|Q6IP09 [details] [associations]
symbol:pabpc1-b "Polyadenylate-binding protein 1-B"
species:8355 "Xenopus laevis" [GO:0005844 "polysome" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043621
"protein self-association" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0005844
GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC072110 EMBL:BC108462 RefSeq:NP_001085069.1
UniGene:Xl.60751 ProteinModelPortal:Q6IP09 SMR:Q6IP09 PRIDE:Q6IP09
GeneID:432140 KEGG:xla:432140 CTD:432140 Xenbase:XB-GENE-6255999
Uniprot:Q6IP09
Length = 633
Score = 146 (56.5 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 46/188 (24%), Positives = 90/188 (47%)
Query: 94 REEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDE 153
R +E+ T + +N E ++ F Q+G L +++ ++RG FV+ ++
Sbjct: 186 RAKEF--TNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHED 243
Query: 154 ATAALNNLESYEFEGRTLKVNYA--KIKK----KNPFPPVQPKPFATF---NLFIANLSF 204
A A++++ + G+ + V A K+++ K F ++ + NL++ NL
Sbjct: 244 AQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 205 EARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC 264
+ LR+ F G + SA+V+ RS G+GFV F S + A A++ G+++
Sbjct: 304 GIDDERLRKEFTPFG-SITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 265 --LVIALS 270
L +AL+
Sbjct: 361 KPLYVALA 368
Score = 124 (48.7 bits), Expect = 7.8e-05, P = 7.8e-05
Identities = 38/143 (26%), Positives = 71/143 (49%)
Query: 121 FEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179
F G +L I + R+ G A+V P +A AL+ + +G+ +++ +++
Sbjct: 31 FSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ-- 88
Query: 180 KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
++P + N+FI NL K L + F + G +++S +V+ +N S GY
Sbjct: 89 -RDP----SLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCKVVCDENG--SKGY 140
Query: 240 GFVSFKSKKVAETAISAFQGKVI 262
GFV F++++ AE AI G ++
Sbjct: 141 GFVHFETQEAAERAIDKMNGMLL 163
>FB|FBgn0264001 [details] [associations]
symbol:bru-3 "bruno-3" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0017148 "negative regulation of translation" evidence=ISA]
[GO:0043234 "protein complex" evidence=IDA] [GO:0042803 "protein
homodimerization activity" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0043234 GO:GO:0042803 EMBL:AE014296 GO:GO:0017148
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P19339
KO:K13207 GeneTree:ENSGT00560000076837 FlyBase:FBgn0264001
UniGene:Dm.13624 GeneID:39527 KEGG:dme:Dmel_CG12478 CTD:39527
GenomeRNAi:39527 NextBio:814113 EMBL:AY060398 RefSeq:NP_729923.1
SMR:Q9VU91 IntAct:Q9VU91 MINT:MINT-899406 STRING:Q9VU91
EnsemblMetazoa:FBtr0330343 UCSC:CG12478-RA InParanoid:Q9VU91
OMA:HALNGEY Uniprot:Q9VU91
Length = 422
Score = 100 (40.3 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 29/100 (29%), Positives = 45/100 (45%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
E R E + V + T +D+R +F GT+ + + ++G AFV GS
Sbjct: 47 ESRSEHLDRKLFVGM-LSKQQTEDDVRQIFHPFGTIEECTILRGPDGASKGCAFVKFGSQ 105
Query: 152 DEATAALNNLE-SYEFEGRT--LKVNYAKIKKKNPFPPVQ 188
EA +A+ NL S G + L V YA +K+ +Q
Sbjct: 106 QEAQSAITNLHGSQTMPGASSSLVVKYADTEKERQIRRMQ 145
Score = 87 (35.7 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 23/64 (35%), Positives = 35/64 (54%)
Query: 196 NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
NLFI +L E +L + F+ G +V+S++V +S +GFVSF + A+ AI
Sbjct: 338 NLFIYHLPQEFGDAELMQMFLPFG-NVISSKVFIDRATNQSKCFGFVSFDNPASAQAAIQ 396
Query: 256 AFQG 259
A G
Sbjct: 397 AMNG 400
>ASPGD|ASPL0000061196 [details] [associations]
symbol:AN10164 species:162425 "Emericella nidulans"
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:C8VTL0 EnsemblFungi:CADANIAT00001543 OMA:QNTNPIP
Uniprot:C8VTL0
Length = 477
Score = 144 (55.7 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 51/205 (24%), Positives = 89/205 (43%)
Query: 60 ITPKKVSPFVFHFSATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRA 119
I P+ +P + V +SA + E +K L + T + ++
Sbjct: 50 IIPQNTNPIPTAITTPMSGNMVSPTSAGGY-VRRAAPEPNKRALYVGGLDPRVTEDILKQ 108
Query: 120 LFEQHGTVLDIEL----SMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175
+FE G V+ +++ + +SK N G FV P A A+ L ++VN+
Sbjct: 109 IFETTGHVISVKIIPDKNFNSKGANYG--FVEFDDPGAAERAMQTLNGRRIHQSEIRVNW 166
Query: 176 AKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRR 235
A + N F++F+ +LS E + L + F + G V A V++ R
Sbjct: 167 AY--QSNTANKEDTSNH--FHIFVGDLSNEVNDEVLLQAFSAFG-SVSEARVMWDMKTGR 221
Query: 236 SAGYGFVSFKSKKVAETAISAFQGK 260
S GYGFV+F+ + AE A+++ G+
Sbjct: 222 SRGYGFVAFRERADAEKALTSMDGE 246
>TAIR|locus:2012161 [details] [associations]
symbol:PAB8 "AT1G49760" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006164 "purine nucleotide
biosynthetic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005829 GO:GO:0046686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC011807 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 ProtClustDB:CLSN2714507
EMBL:AF370517 EMBL:AY064622 IPI:IPI00535850 PIR:C96534
RefSeq:NP_001185184.1 RefSeq:NP_564554.1 UniGene:At.21584
UniGene:At.67107 UniGene:At.67318 ProteinModelPortal:Q9FXA2
SMR:Q9FXA2 IntAct:Q9FXA2 STRING:Q9FXA2 PaxDb:Q9FXA2 PRIDE:Q9FXA2
ProMEX:Q9FXA2 EnsemblPlants:AT1G49760.1 EnsemblPlants:AT1G49760.2
GeneID:841399 KEGG:ath:AT1G49760 TAIR:At1g49760 InParanoid:Q9FXA2
OMA:RPPYYAP PhylomeDB:Q9FXA2 Genevestigator:Q9FXA2 Uniprot:Q9FXA2
Length = 671
Score = 146 (56.5 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 49/180 (27%), Positives = 82/180 (45%)
Query: 84 SSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH-SKNRNRG 142
++AAA Q+ T L ++ T T + F Q G V+ + + + R+ G
Sbjct: 32 AAAAAAGAAQQ----GTTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLG 87
Query: 143 LAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANL 202
+V +P +A+ ALN L GR ++V Y+ ++P + N+FI NL
Sbjct: 88 YGYVNYATPQDASRALNELNFMALNGRAIRVMYSV---RDP----SLRKSGVGNIFIKNL 140
Query: 203 SFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
K L E F + G ++S +V D +S GYGFV + + + A+ AI G ++
Sbjct: 141 DKSIDHKALHETFSAFG-PILSCKVAV-DPSGQSKGYGFVQYDTDEAAQGAIDKLNGMLL 198
Score = 128 (50.1 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 47/186 (25%), Positives = 83/186 (44%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEAT 155
E+ T + +N+ + + E++ +F + G + + +++G FV + D+A
Sbjct: 219 EKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAA 278
Query: 156 AALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQP-----KPFAT----FNLFIANLSFEA 206
A++ L F+ + V A+ K + Q K A NL++ NL
Sbjct: 279 RAVDALNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESV 338
Query: 207 RAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC-- 264
LRE F G + S +V+ D S G GFV+F + + A AI+ GK+I+
Sbjct: 339 TDDKLREHFAPFG-TITSCKVM-RDPSGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKP 396
Query: 265 LVIALS 270
L +AL+
Sbjct: 397 LYVALA 402
>FB|FBgn0260943 [details] [associations]
symbol:Rbp6 "RNA-binding protein 6" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
EMBL:AE014296 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 eggNOG:COG0724 KO:K14411 GeneTree:ENSGT00700000104255
GO:GO:0048864 OMA:ENYISAA EMBL:AY122226 EMBL:S51715 PIR:F48110
RefSeq:NP_001097631.1 RefSeq:NP_001097632.1 RefSeq:NP_730245.2
UniGene:Dm.22292 HSSP:Q61474 ProteinModelPortal:Q9VVE5 SMR:Q9VVE5
DIP:DIP-19056N IntAct:Q9VVE5 MINT:MINT-918255
EnsemblMetazoa:FBtr0075285 GeneID:39919 KEGG:dme:Dmel_CG32169
UCSC:CG32169-RA CTD:39919 FlyBase:FBgn0260943 InParanoid:Q9VVE5
OrthoDB:EOG4MSBF6 GenomeRNAi:39919 NextBio:816085 Bgee:Q9VVE5
Uniprot:Q9VVE5
Length = 369
Score = 142 (55.0 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 42/162 (25%), Positives = 74/162 (45%)
Query: 110 WTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEG 168
W ++ E +R F ++G + + + + + R+RG FVT P+ L ++E +G
Sbjct: 38 WQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQ-GTHELDG 96
Query: 169 RTLKVNYAKIKKKNPFPP-VQPKPFA-TFNLFIANLSFEARAKDLREFFISEGWDVVSAE 226
+ K+ K FP PK T +F+ LS +D++ +F G + A
Sbjct: 97 K-------KVDPKVAFPRRAHPKMVTRTKKIFVGGLSAPTTLEDVKSYFEQFG-PIEDAM 148
Query: 227 VIFHDNPRRSAGYGFVSFKSK----KVAETAISAFQGKVIMC 264
++F R G+GFV+F+S+ KV E K++ C
Sbjct: 149 LMFDKQTNRHRGFGFVTFQSEDVVDKVCEIHFHEINNKMVEC 190
>FB|FBgn0052062 [details] [associations]
symbol:A2bp1 "Ataxin-2 binding protein 1" species:7227
"Drosophila melanogaster" [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399 "nervous
system development" evidence=IMP] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IDA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] [GO:0007474 "imaginal
disc-derived wing vein specification" evidence=IMP] [GO:0008134
"transcription factor binding" evidence=IPI] [GO:0048477
"oogenesis" evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0045893
GO:GO:0007399 EMBL:AE014296 GO:GO:0000166 GO:GO:0007474
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0048477 GO:GO:0044212
HSSP:P09651 KO:K14946 UniGene:Dm.5024 GeneID:39198
KEGG:dme:Dmel_CG32062 CTD:39198 FlyBase:FBgn0052062 ChiTaRS:A2bp1
GenomeRNAi:39198 NextBio:812445 RefSeq:NP_729614.2
ProteinModelPortal:Q9VT99 SMR:Q9VT99 MINT:MINT-1333195
UCSC:CG32062-RD InParanoid:Q9VT99 PhylomeDB:Q9VT99
ArrayExpress:Q9VT99 Bgee:Q9VT99 Uniprot:Q9VT99
Length = 881
Score = 147 (56.8 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 35/112 (31%), Positives = 57/112 (50%)
Query: 65 VSPFVFHFSATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQH 124
VSP + + + V + S AAV + + RL N+P+ D+RA+F Q
Sbjct: 400 VSPSA-NVATSLSSALVPAQSVAAVAAASLDAKSQPKRLHVSNIPFRFRDPDLRAMFGQF 458
Query: 125 GTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176
GT+LD+E+ + + ++G FVT + ++A A L EGR ++VN A
Sbjct: 459 GTILDVEIIFNERG-SKGFGFVTFANSNDAERARERLHGTVVEGRKIEVNNA 509
>SGD|S000006316 [details] [associations]
symbol:MRD1 "Essential conserved small ribosomal subunit
(40s) synthesis factor" species:4932 "Saccharomyces cerevisiae"
[GO:0005730 "nucleolus" evidence=IDA] [GO:0042134 "rRNA primary
transcript binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030686 "90S preribosome" evidence=IDA] [GO:0000480
"endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP] [GO:0000472
"endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA
from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP] [GO:0000447
"endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S
rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S
rRNA, LSU-rRNA)" evidence=IMP] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0034462 "small-subunit processome assembly"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000006316 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BK006949
GO:GO:0030686 GO:GO:0000447 GO:GO:0000472 eggNOG:COG0724
EMBL:U32445 GO:GO:0000480 GO:GO:0034462 KO:K14787
HOGENOM:HOG000211156 OrthoDB:EOG4J40R3 OMA:VFREKNV PIR:S59777
RefSeq:NP_015437.1 ProteinModelPortal:Q06106 SMR:Q06106
DIP:DIP-6281N IntAct:Q06106 MINT:MINT-600745 STRING:Q06106
PaxDb:Q06106 PeptideAtlas:Q06106 EnsemblFungi:YPR112C GeneID:856228
KEGG:sce:YPR112C CYGD:YPR112c GeneTree:ENSGT00700000104575
NextBio:981470 Genevestigator:Q06106 GermOnline:YPR112C
Uniprot:Q06106
Length = 887
Score = 102 (41.0 bits), Expect = 3.0e-07, Sum P(2) = 3.0e-07
Identities = 25/89 (28%), Positives = 48/89 (53%)
Query: 96 EEYSKT-RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKN-RNRGLAFVTMGSPDE 153
E+ ++T RL +N+ +TS ED R LF G + ++ +++ ++ +++G A+V
Sbjct: 339 EKINQTGRLFLRNILYTSKEEDFRKLFSPFGELEEVHVALDTRTGQSKGFAYVLFKDSKN 398
Query: 154 ATAALNNLESYEFEGRTLKVNYAKIKKKN 182
A A L+ F+GR L + + KK +
Sbjct: 399 AVNAYVELDKQIFQGRLLHILPGEEKKSH 427
Score = 92 (37.4 bits), Expect = 3.0e-07, Sum P(2) = 3.0e-07
Identities = 24/73 (32%), Positives = 38/73 (52%)
Query: 194 TFNLFIANLSFEARAKDLREFF-ISEGWDVVSAEVI---FHDNPRRSAGYGFVSFKSKKV 249
T ++FI NL+F ++L + F + G+ V + H S G+GFV F++K+
Sbjct: 662 TVSIFIKNLNFSTTNQNLTDRFKVFTGFVVAQVKTKPDPKHQGKTLSMGFGFVEFRTKEQ 721
Query: 250 AETAISAFQGKVI 262
A I+A G VI
Sbjct: 722 ANAVIAAMDGTVI 734
>UNIPROTKB|P20965 [details] [associations]
symbol:pabpc1-a "Polyadenylate-binding protein 1-A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005844 "polysome" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0005844 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:M27072 EMBL:X57483
EMBL:BC052100 PIR:A32323 RefSeq:NP_001080204.1 UniGene:Xl.35547
ProteinModelPortal:P20965 SMR:P20965 PRIDE:P20965 GeneID:379896
KEGG:xla:379896 CTD:379896 Xenbase:XB-GENE-963463 Uniprot:P20965
Length = 633
Score = 145 (56.1 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 44/188 (23%), Positives = 92/188 (48%)
Query: 94 REEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDE 153
R +E+ T + +N E ++ +F ++G L +++ +++G FV+ ++
Sbjct: 186 RAKEF--TNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHED 243
Query: 154 ATAALNNLESYEFEGRTLKVNYA--KIKK----KNPFPPVQPKPFATF---NLFIANLSF 204
A A++ + + G+++ V A K+++ K F ++ + NL++ NL
Sbjct: 244 AQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 205 EARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC 264
+ LR+ F+ G + SA+V+ RS G+GFV F S + A A++ G+++
Sbjct: 304 GIDDERLRKEFLPFG-TITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 265 --LVIALS 270
L +AL+
Sbjct: 361 KPLYVALA 368
Score = 129 (50.5 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 42/155 (27%), Positives = 78/155 (50%)
Query: 114 HEDIRA--LFEQH---GTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFE 167
H+D+ L+E+ G +L I + R+ G A+V P +A AL+ + +
Sbjct: 19 HQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIK 78
Query: 168 GRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEV 227
GR +++ +++ ++P + N+FI NL K L + F + G +++S +V
Sbjct: 79 GRPVRIMWSQ---RDP----SLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCKV 130
Query: 228 IFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
+ +N S GYGFV F++++ AE AI G ++
Sbjct: 131 VCDENG--SKGYGFVHFETQEAAERAIDKMNGMLL 163
>UNIPROTKB|C9JTN7 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000206748
EMBL:AC016700 HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00927286
ProteinModelPortal:C9JTN7 SMR:C9JTN7 STRING:C9JTN7
Ensembl:ENST00000445587 ArrayExpress:C9JTN7 Bgee:C9JTN7
Uniprot:C9JTN7
Length = 285
Score = 139 (54.0 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 52/167 (31%), Positives = 76/167 (45%)
Query: 95 EEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEA 154
E+E KT V N+ T I LF Q G + ++ M + N FV A
Sbjct: 2 EDEMPKTLYVG-NLSRDVTEALILQLFSQIGPCKNCKMIMDTAG-NDPYCFVEFHEHRHA 59
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFAT-FNLFIANLSFEARAKDLRE 213
AAL + + G+ +KVN+A P Q K + F++F+ +LS E +D++
Sbjct: 60 AAALAAMNGRKIMGKEVKVNWATT------PSSQKKDTSNHFHVFVGDLSPEITTEDIKA 113
Query: 214 FFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
F G + A V+ +S GYGFVSF +K AE AI G+
Sbjct: 114 AFAPFG-RISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQ 159
>TAIR|locus:2199700 [details] [associations]
symbol:PAB3 "poly(A) binding protein 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006397
"mRNA processing" evidence=IGI] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AC003979 EMBL:Y12227
EMBL:AF293840 EMBL:AY054490 IPI:IPI00543342 PIR:T00768
RefSeq:NP_173690.1 UniGene:At.208 ProteinModelPortal:O64380
SMR:O64380 PaxDb:O64380 PRIDE:O64380 EnsemblPlants:AT1G22760.1
GeneID:838882 KEGG:ath:AT1G22760 TAIR:At1g22760 InParanoid:O64380
OMA:SSISHQK PhylomeDB:O64380 ProtClustDB:CLSN2679283
Genevestigator:O64380 GermOnline:AT1G22760 Uniprot:O64380
Length = 660
Score = 145 (56.1 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 41/147 (27%), Positives = 71/147 (48%)
Query: 116 DIRALFE---QHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +ALFE GT+L +++M R++G FV + A AA++ L + +
Sbjct: 148 DNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVF 207
Query: 173 VNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDN 232
V + +++ P P T N+++ NL E +LR+ F G V+S+ V+ D
Sbjct: 208 VGHFIRRQERARDENTPTPRFT-NVYVKNLPKEIGEDELRKTFGKFG--VISSAVVMRDQ 264
Query: 233 PRRSAGYGFVSFKSKKVAETAISAFQG 259
S +GFV+F+ + A +A+ G
Sbjct: 265 SGNSRCFGFVNFECTEAAASAVEKMNG 291
Score = 133 (51.9 bits), Expect = 7.9e-06, P = 7.9e-06
Identities = 42/168 (25%), Positives = 77/168 (45%)
Query: 95 EEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEA 154
++ + + L A ++ T + LF+ V+ + + R+ G A++ +P++A
Sbjct: 43 DQTHPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDA 102
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
A+ L R +++ + ++P + K N+FI NL K L E
Sbjct: 103 YRAMEALNYTPLFDRPIRI---MLSNRDPSTRLSGKG----NIFIKNLDASIDNKALFET 155
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
F S G ++S +V D RS GYGFV F+ ++ A+ AI G ++
Sbjct: 156 FSSFG-TILSCKVAM-DVTGRSKGYGFVQFEKEESAQAAIDKLNGMLM 201
Score = 120 (47.3 bits), Expect = 0.00023, P = 0.00023
Identities = 45/182 (24%), Positives = 82/182 (45%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N+P +++R F + G + + +R FV + A +A+
Sbjct: 229 TNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEK 288
Query: 161 LESYE------FEGRTLKVNYAKIKKKNPFPPVQPKPFATF---NLFIANLSFEARAKDL 211
+ + GR K + + + + F + F NL++ NL + L
Sbjct: 289 MNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKL 348
Query: 212 REFFISEGWDVVSAEVIFHDNPR-RSAGYGFVSFKSKKVAETAISAFQGKVI--MCLVIA 268
+E F SE +V S++V+ NP+ S G+GFV++ + + A A+S GK+I L IA
Sbjct: 349 KEMF-SEYGNVTSSKVML--NPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIA 405
Query: 269 LS 270
L+
Sbjct: 406 LA 407
>FB|FBgn0005649 [details] [associations]
symbol:Rox8 "Rox8" species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0005685 "U1 snRNP" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0000381 HSSP:P11940 GO:GO:0005685
GeneTree:ENSGT00680000099967 KO:K13201 OMA:EEVYNQS
FlyBase:FBgn0005649 EMBL:BT050464 RefSeq:NP_732945.1
UniGene:Dm.6352 SMR:Q8IMX4 IntAct:Q8IMX4 MINT:MINT-303158
STRING:Q8IMX4 EnsemblMetazoa:FBtr0084591 EnsemblMetazoa:FBtr0333200
EnsemblMetazoa:FBtr0333201 EnsemblMetazoa:FBtr0333202 GeneID:42848
KEGG:dme:Dmel_CG5422 UCSC:CG5422-RD CTD:42848 InParanoid:Q8IMX4
GenomeRNAi:42848 NextBio:830893 Uniprot:Q8IMX4
Length = 470
Score = 143 (55.4 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 50/169 (29%), Positives = 77/169 (45%)
Query: 95 EEEYSKTRLVAQNVPWTSTHEDIR-ALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDE 153
+E KT V N+ +S ED+ ALF G V ++ N AF+ +
Sbjct: 2 DESQPKTLYVG-NLD-SSVSEDLLIALFSTMGPVKSCKIIREPGNDP--YAFIEYSNYQA 57
Query: 154 ATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLRE 213
AT AL + F + +KVN+A P + + ++F+ +LS E + LRE
Sbjct: 58 ATTALTAMNKRLFLEKEIKVNWATSPGNQPKTDIS----SHHHIFVGDLSPEIETETLRE 113
Query: 214 FFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
F G ++ + ++ + +S GY FVSF K AE AI A G+ I
Sbjct: 114 AFAPFG-EISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMNGQWI 161
>POMBASE|SPAC16.02c [details] [associations]
symbol:srp2 "mRNA export factor Srp2" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=ISM]
[GO:0003729 "mRNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006406 "mRNA export from nucleus" evidence=ISO]
[GO:0008143 "poly(A) RNA binding" evidence=ISO] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0046982 "protein heterodimerization
activity" evidence=IPI] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 PomBase:SPAC16.02c
GO:GO:0005634 EMBL:CU329670 GO:GO:0008380 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006406
eggNOG:COG0724 GO:GO:0008143 OrthoDB:EOG4BP4N7 EMBL:AF012278
EMBL:D89163 PIR:T37730 PIR:T42525 RefSeq:NP_594570.1
ProteinModelPortal:P78814 STRING:P78814 PRIDE:P78814
EnsemblFungi:SPAC16.02c.1 GeneID:2542772 KEGG:spo:SPAC16.02c
OMA:CKERSHG NextBio:20803816 Uniprot:P78814
Length = 365
Score = 141 (54.7 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 48/178 (26%), Positives = 81/178 (45%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAAL 158
S+TRL +P +T ED+ F+ +G +LD +L G FV + +A +
Sbjct: 2 SETRLFVGRIPPQATREDMMDFFKGYGQILDCKLM-------NGFGFVEVEDARDARDIV 54
Query: 159 NNLESYEFEGRTLKVNYAK--IKKKNPF----PPVQPKPFAT-FNLFIANLSFEARAKDL 211
N+ + EF G + V A+ +++ F P+P T F L + NLS + +DL
Sbjct: 55 NDFQGKEFMGSRIVVEPARGERRRRENFRESAASKYPRPRRTGFRLIVENLSEDVSWQDL 114
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIAL 269
++ G E F D R + G G V F +++ A+++ G+VI + L
Sbjct: 115 KDVMRKAG------EPTFTDAHRENPGAGVVEFSTEEDMRNALTSLNGEVIKGQAVTL 166
>SGD|S000000967 [details] [associations]
symbol:PAB1 "Poly(A) binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0008143 "poly(A) RNA binding"
evidence=IDA;IMP] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0005840 "ribosome" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0006446 "regulation of translational
initiation" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
SGD:S000000967 GO:GO:0005634 GO:GO:0000166 GO:GO:0006446
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005840 EMBL:BK006939
GO:GO:0051028 EMBL:U18922 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 GO:GO:0060211
GeneTree:ENSGT00640000091232 OrthoDB:EOG4QJVWJ EMBL:M12780
EMBL:M13371 EMBL:D00023 EMBL:AY692854 PIR:A25221 RefSeq:NP_011092.1
PDB:1IFW PDBsum:1IFW ProteinModelPortal:P04147 SMR:P04147
DIP:DIP-2275N IntAct:P04147 MINT:MINT-693056 STRING:P04147
PaxDb:P04147 PeptideAtlas:P04147 EnsemblFungi:YER165W GeneID:856912
KEGG:sce:YER165W OMA:ITEKNQQ EvolutionaryTrace:P04147
NextBio:983356 Genevestigator:P04147 GermOnline:YER165W
Uniprot:P04147
Length = 577
Score = 144 (55.7 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 47/180 (26%), Positives = 81/180 (45%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
E+ + Y T L +N+ +T E + LF + G ++ L + + +G FV
Sbjct: 212 EETKAHY--TNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKH 269
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKK------KNPFPPVQPKPFATF---NLFIANL 202
++A A+ L E G L V A+ K K + + + A + NLF+ NL
Sbjct: 270 EDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNL 329
Query: 203 SFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
+ L E F G + SA+V+ +N + S G+GFV F + + A AI+ +++
Sbjct: 330 DDSVDDEKLEEEFAPYG-TITSAKVMRTENGK-SKGFGFVCFSTPEEATKAITEKNQQIV 387
Score = 127 (49.8 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 43/182 (23%), Positives = 83/182 (45%)
Query: 82 DSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNR 141
D AA +E + E S L ++ + + + +F G+V I + + +
Sbjct: 19 DDQKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTS 78
Query: 142 -GLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIA 200
G A+V + A+ L +GR ++ +++ P ++ K + N+FI
Sbjct: 79 LGYAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRD-----PSLRKK--GSGNIFIK 131
Query: 201 NLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
NL + K L + F G D++S+++ +N + S G+GFV F+ + A+ AI A G
Sbjct: 132 NLHPDIDNKALYDTFSVFG-DILSSKIATDENGK-SKGFGFVHFEEEGAAKEAIDALNGM 189
Query: 261 VI 262
++
Sbjct: 190 LL 191
>UNIPROTKB|J9P972 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
Ensembl:ENSCAFT00000049246 Uniprot:J9P972
Length = 258
Score = 137 (53.3 bits), Expect = 4.3e-07, P = 4.3e-07
Identities = 38/156 (24%), Positives = 77/156 (49%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
+L + W++T E +R+ F Q+G V+D + + + N++RG FV P+ L +
Sbjct: 56 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 115
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGW 220
+ +GR + K+K P + + +F+ + +LRE+F G
Sbjct: 116 -RPHTLDGRNIDP-----KQKGP----RSDNSKSNKIFVGGIPHNCGETELREYFKKFG- 164
Query: 221 DVVSAEVIFHD-NPRRSAGYGFVSFKSKKVAETAIS 255
VV+ V+ +D +R G+GF++F+ ++ + A++
Sbjct: 165 -VVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN 199
>UNIPROTKB|F1NH82 [details] [associations]
symbol:F1NH82 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 GeneTree:ENSGT00640000091232 EMBL:AADN02025122
EMBL:AADN02025123 EMBL:AADN02025124 IPI:IPI00574035
Ensembl:ENSGALT00000023332 Uniprot:F1NH82
Length = 469
Score = 142 (55.0 bits), Expect = 4.4e-07, P = 4.4e-07
Identities = 46/188 (24%), Positives = 89/188 (47%)
Query: 94 REEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDE 153
R +E+ T + +N E ++ LF + G L +++ +++G FV+ ++
Sbjct: 18 RAKEF--TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 75
Query: 154 ATAALNNLESYEFEGRTLKVNYA--KIKK----KNPFPPVQPKPFATF---NLFIANLSF 204
A A++ + E G+ + V A K+++ K F ++ + NL++ NL
Sbjct: 76 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 135
Query: 205 EARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC 264
+ LR+ F G + SA+V+ RS G+GFV F S + A A++ G+++
Sbjct: 136 GIDDERLRKEFSPFG-TITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVAT 192
Query: 265 --LVIALS 270
L +AL+
Sbjct: 193 KPLYVALA 200
>UNIPROTKB|Q96DH6 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0048864 "stem cell
development" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 KO:K14411 OrthoDB:EOG48GW3J EMBL:BC001526
EMBL:BC017560 EMBL:AK093888 IPI:IPI00073713 IPI:IPI00167806
IPI:IPI00455161 RefSeq:NP_620412.1 RefSeq:NP_733839.1
UniGene:Hs.658922 ProteinModelPortal:Q96DH6 SMR:Q96DH6
IntAct:Q96DH6 STRING:Q96DH6 PhosphoSite:Q96DH6 DMDM:51316513
PaxDb:Q96DH6 PRIDE:Q96DH6 DNASU:124540 Ensembl:ENST00000284073
Ensembl:ENST00000322684 Ensembl:ENST00000579180 GeneID:124540
KEGG:hsa:124540 UCSC:uc002iuz.1 UCSC:uc002iva.3 CTD:124540
GeneCards:GC17P055334 HGNC:HGNC:18585 HPA:CAB022300 MIM:607897
neXtProt:NX_Q96DH6 PharmGKB:PA38590 InParanoid:Q96DH6 OMA:ISDCTIM
PhylomeDB:Q96DH6 ChiTaRS:MSI2 GenomeRNAi:124540 NextBio:81316
ArrayExpress:Q96DH6 Bgee:Q96DH6 CleanEx:HS_MSI2
Genevestigator:Q96DH6 GermOnline:ENSG00000153944 Uniprot:Q96DH6
Length = 328
Score = 139 (54.0 bits), Expect = 4.9e-07, P = 4.9e-07
Identities = 42/191 (21%), Positives = 83/191 (43%)
Query: 81 VDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH-SKNR 139
++++ + + + ++ ++ + W ++ + +R F + G + + + + R
Sbjct: 1 MEANGSQGTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKR 60
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPP-VQPKPFA-TFNL 197
+RG FVT P L +E + +T I K FP QPK T +
Sbjct: 61 SRGFGFVTFADPASVDKVLGQ-PHHELDSKT-------IDPKVAFPRRAQPKMVTRTKKI 112
Query: 198 FIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSK----KVAETA 253
F+ LS +D++++F G V A ++F R G+GFV+F+++ KV E
Sbjct: 113 FVGGLSANTVVEDVKQYFEQFG-KVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIH 171
Query: 254 ISAFQGKVIMC 264
K++ C
Sbjct: 172 FHEINNKMVEC 182
>RGD|1563142 [details] [associations]
symbol:Pabpc1l "poly(A) binding protein, cytoplasmic 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1563142
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 OrthoDB:EOG4K6G3V
GeneTree:ENSGT00640000091232 IPI:IPI00778604
ProteinModelPortal:D3ZAS7 Ensembl:ENSRNOT00000055172
UCSC:RGD:1563142 Uniprot:D3ZAS7
Length = 607
Score = 143 (55.4 bits), Expect = 5.1e-07, P = 5.1e-07
Identities = 41/171 (23%), Positives = 82/171 (47%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N+ + ++ LF Q G +++ S ++RG F+ +EA A+++
Sbjct: 191 TNIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDSNGQSRGFGFINFEKHEEAQKAVDH 250
Query: 161 LESYEFEGRTLKVNYA--KIKKKNP----FPPVQPKP---FATFNLFIANLSFEARAKDL 211
+ E G+ L V A + +++N F ++ + + NL++ NL L
Sbjct: 251 MNGKEVSGQLLYVGRAQKRAERQNELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDDRL 310
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
+E F + G + SA+V+ + S G+GFV F S + A A++ G+++
Sbjct: 311 KEVFSTYGV-ITSAKVMTESS--HSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 124 (48.7 bits), Expect = 7.4e-05, P = 7.4e-05
Identities = 35/144 (24%), Positives = 75/144 (52%)
Query: 120 LFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178
+F GT+L I + + R+ G A++ P +A AL+ + +G+ +++ ++
Sbjct: 30 MFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMNFEMIKGQPIRIMWS-- 87
Query: 179 KKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAG 238
+ P ++ N+FI NL K L + F + G ++S++V+++++ R G
Sbjct: 88 ---HRDPGLRRSGMG--NIFIKNLENSIDNKALYDTFSTFG-SILSSKVVYNEHGSR--G 139
Query: 239 YGFVSFKSKKVAETAISAFQGKVI 262
+GFV F++ + A+ AI+ G ++
Sbjct: 140 FGFVHFETHEAAQKAINTMNGMLL 163
Score = 123 (48.4 bits), Expect = 9.6e-05, P = 9.6e-05
Identities = 32/142 (22%), Positives = 71/142 (50%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G++L ++ +++++ +RG FV + + A A+N + R + V + K ++
Sbjct: 119 FSTFGSILSSKV-VYNEHGSRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQ 177
Query: 181 KNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYG 240
K + + N+++ NL + + L++ F G S +V+ D+ +S G+G
Sbjct: 178 KRE-AELGARALGFTNIYVKNLRVDMDEQGLQDLFSQFG-KTQSVKVM-RDSNGQSRGFG 234
Query: 241 FVSFKSKKVAETAISAFQGKVI 262
F++F+ + A+ A+ GK +
Sbjct: 235 FINFEKHEEAQKAVDHMNGKEV 256
>ZFIN|ZDB-GENE-050308-1 [details] [associations]
symbol:pabpc1b "poly A binding protein, cytoplasmic 1
b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-050308-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CU468682 EMBL:CU468824
EMBL:BC059662 EMBL:BC063948 IPI:IPI00493464 RefSeq:NP_957176.1
UniGene:Dr.99377 SMR:Q6P3L1 STRING:Q6P3L1
Ensembl:ENSDART00000032474 GeneID:393856 KEGG:dre:393856 CTD:393856
InParanoid:Q6P3L1 NextBio:20814840 Uniprot:Q6P3L1
Length = 634
Score = 143 (55.4 bits), Expect = 5.5e-07, P = 5.5e-07
Identities = 45/188 (23%), Positives = 89/188 (47%)
Query: 94 REEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDE 153
R +E+ T + +N + ++ +F ++G + I + ++RG FV+ ++
Sbjct: 186 RAKEF--TNVYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDENGKSRGFGFVSFERHED 243
Query: 154 ATAALNNLESYEFEGRTLKVNYA--KIKK----KNPFPPVQPKPFATF---NLFIANLSF 204
A A++ + E G+ + V A K+++ K F ++ + NL++ NL
Sbjct: 244 AQRAVDEMNGKEMNGKLIYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDD 303
Query: 205 EARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC 264
+ LR+ F G + SA+V+ RS G+GFV F S + A A++ G+++
Sbjct: 304 GIDDERLRKEFSPFG-TITSAKVMMDGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 265 --LVIALS 270
L +AL+
Sbjct: 361 KPLYVALA 368
Score = 130 (50.8 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 42/155 (27%), Positives = 78/155 (50%)
Query: 114 HEDIRA--LFEQH---GTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFE 167
H+D+ L+E+ G +L I + R+ G A+V P +A AL+ + +
Sbjct: 19 HQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIK 78
Query: 168 GRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEV 227
GR +++ +++ ++P + N+FI NL K L + F + G +++S +V
Sbjct: 79 GRPVRIMWSQ---RDP----SLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCKV 130
Query: 228 IFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
+ +N S GYGFV F++++ AE AI G ++
Sbjct: 131 VCDENG--SKGYGFVHFETQEAAERAIEKMNGMLL 163
>MGI|MGI:1923876 [details] [associations]
symbol:Msi2 "musashi RNA-binding protein 2" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844
"polysome" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0048864 "stem cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1923876 GO:GO:0005737 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005844 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 GO:GO:0048864 CTD:124540 ChiTaRS:MSI2
EMBL:AB056102 EMBL:AB056103 EMBL:BK001483 EMBL:AK049637
EMBL:AK049688 EMBL:AK051269 IPI:IPI00120924 IPI:IPI00462899
IPI:IPI00462900 RefSeq:NP_473384.1 UniGene:Mm.400451
UniGene:Mm.428433 UniGene:Mm.474737 ProteinModelPortal:Q920Q6
SMR:Q920Q6 STRING:Q920Q6 PhosphoSite:Q920Q6 PaxDb:Q920Q6
PRIDE:Q920Q6 Ensembl:ENSMUST00000092794 Ensembl:ENSMUST00000107909
GeneID:76626 KEGG:mmu:76626 UCSC:uc007kvn.2 InParanoid:Q920Q6
OMA:ENYISAA NextBio:345476 Bgee:Q920Q6 CleanEx:MM_MSI2
Genevestigator:Q920Q6 GermOnline:ENSMUSG00000069769 Uniprot:Q920Q6
Length = 346
Score = 139 (54.0 bits), Expect = 5.5e-07, P = 5.5e-07
Identities = 42/191 (21%), Positives = 83/191 (43%)
Query: 81 VDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH-SKNR 139
++++ + + + ++ ++ + W ++ + +R F + G + + + + R
Sbjct: 1 MEANGSPGTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKR 60
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPP-VQPKPFA-TFNL 197
+RG FVT P L +E + +T I K FP QPK T +
Sbjct: 61 SRGFGFVTFADPASVDKVLGQ-PHHELDSKT-------IDPKVAFPRRAQPKMVTRTKKI 112
Query: 198 FIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSK----KVAETA 253
F+ LS +D++++F G V A ++F R G+GFV+F+++ KV E
Sbjct: 113 FVGGLSANTVVEDVKQYFEQFG-KVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIH 171
Query: 254 ISAFQGKVIMC 264
K++ C
Sbjct: 172 FHEINNKMVEC 182
>UNIPROTKB|Q3ZC44 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 OMA:FILFKDP EMBL:DAAA02020063
EMBL:DAAA02020062 EMBL:BC102923 IPI:IPI00843025
RefSeq:NP_001035612.1 UniGene:Bt.58979 SMR:Q3ZC44
Ensembl:ENSBTAT00000018114 GeneID:513410 KEGG:bta:513410
NextBio:20870841 Uniprot:Q3ZC44
Length = 285
Score = 137 (53.3 bits), Expect = 5.9e-07, P = 5.9e-07
Identities = 44/192 (22%), Positives = 81/192 (42%)
Query: 73 SATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIEL 132
SA Q + + +N + EE+ K + + W ++ +D++ F + G V+D +
Sbjct: 44 SAAPQAGNQNGAEGDQINASKNEEDAGK--MFVGGLSWDTSKKDLKDYFTKFGEVVDCTI 101
Query: 133 SMH-SKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKP 191
M + R+RG F+ L+ E + +GR + A KK+P +
Sbjct: 102 KMDPNTGRSRGFGFILFKDATSVEKVLDQKE-HRLDGRVIDPKKAMAMKKDPVKKI---- 156
Query: 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKS----K 247
F+ L+ EA + +RE+F E ++ + E+ + G+ F++FK K
Sbjct: 157 ------FVGGLNPEATEEKIREYF-GEFGEIEAIELPMDPKSNKRRGFVFITFKEEEPVK 209
Query: 248 KVAETAISAFQG 259
KV E G
Sbjct: 210 KVLEKKFHTISG 221
>POMBASE|SPBC1861.04c [details] [associations]
symbol:SPBC1861.04c "RNA-binding protein Prp24
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000244
"assembly of spliceosomal tri-snRNP" evidence=ISO] [GO:0000245
"spliceosomal complex assembly" evidence=ISO] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005688 "U6 snRNP" evidence=ISO] [GO:0017069
"snRNA binding" evidence=ISO] InterPro:IPR000504 InterPro:IPR003107
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00386 PomBase:SPBC1861.04c GO:GO:0000166 EMBL:CU329671
Gene3D:3.30.70.330 GO:GO:0000244 GO:GO:0017069 GO:GO:0000245
GO:GO:0005688 OrthoDB:EOG486CNQ InterPro:IPR008669 Pfam:PF05391
eggNOG:NOG321927 OMA:SQAVMKM PIR:T39743 RefSeq:NP_596721.1
HSSP:P49960 ProteinModelPortal:Q9USY2 EnsemblFungi:SPBC1861.04c.1
GeneID:2539617 KEGG:spo:SPBC1861.04c NextBio:20800774
Uniprot:Q9USY2
Length = 1014
Score = 145 (56.1 bits), Expect = 6.0e-07, P = 6.0e-07
Identities = 49/164 (29%), Positives = 73/164 (44%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T L N P T DI LF +G V+D+ N NR +V M PDEA AL
Sbjct: 666 TNLYVTNFPPTYDELDITKLFSAYGNVVDVRFPSLRYNTNRRFCYVQMRKPDEAHNAL-- 723
Query: 161 LESYEFEGRTLKVNYA-KIKKKNPFPPVQPKPFATFN---LFIANLSFEARAKDLREFFI 216
+ + L+ Y ++ +P P+ A + L++ N+ F+ KD+ FF
Sbjct: 724 ----QLHKKLLEEKYPIQVFISDPLRRT-PRSGAVYEGRELYVTNIDFKVNEKDVETFFR 778
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
G V S + N + G+G+V + + AE A+SA GK
Sbjct: 779 DYG-QVESVRIPKRFNQHK--GFGYVVMTTNQDAENALSA-AGK 818
>TAIR|locus:2160752 [details] [associations]
symbol:AT5G06210 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AP002544 HOGENOM:HOG000276232
HSSP:Q61474 EMBL:AY062714 EMBL:AY093349 EMBL:AY087577
IPI:IPI00530408 RefSeq:NP_196239.1 UniGene:At.27256
ProteinModelPortal:Q9FFZ6 SMR:Q9FFZ6 STRING:Q9FFZ6 PaxDb:Q9FFZ6
PRIDE:Q9FFZ6 EnsemblPlants:AT5G06210.1 GeneID:830508
KEGG:ath:AT5G06210 TAIR:At5g06210 InParanoid:Q9FFZ6 OMA:SDRSKGF
PhylomeDB:Q9FFZ6 ProtClustDB:CLSN2686837 ArrayExpress:Q9FFZ6
Genevestigator:Q9FFZ6 Uniprot:Q9FFZ6
Length = 146
Score = 119 (46.9 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 30/99 (30%), Positives = 53/99 (53%)
Query: 83 SSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNR 141
+SSA+ T++R ++L + + +T + + F + G V++ ++ M +R++
Sbjct: 19 NSSASCFFTQRRGVA---SKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSK 75
Query: 142 GLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
G FVT S DEA AL + GRT+ V+YAK K+
Sbjct: 76 GFGFVTFASADEAQKALMEFNGQQLNGRTIFVDYAKAKQ 114
Score = 100 (40.3 bits), Expect = 0.00077, P = 0.00077
Identities = 27/75 (36%), Positives = 38/75 (50%)
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
LFI LSF + L E F G VV A+++ RS G+GFV+F S A+ A+
Sbjct: 36 LFIGGLSFCTTEQGLSEAFSKCG-QVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALME 94
Query: 257 FQGKVIMCLVIALSY 271
F G+ + I + Y
Sbjct: 95 FNGQQLNGRTIFVDY 109
>UNIPROTKB|F1NH81 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
EMBL:AADN02025122 IPI:IPI00578358 Ensembl:ENSGALT00000023333
Uniprot:F1NH81
Length = 573
Score = 142 (55.0 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 46/188 (24%), Positives = 89/188 (47%)
Query: 94 REEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDE 153
R +E+ T + +N E ++ LF + G L +++ +++G FV+ ++
Sbjct: 122 RAKEF--TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 179
Query: 154 ATAALNNLESYEFEGRTLKVNYA--KIKK----KNPFPPVQPKPFATF---NLFIANLSF 204
A A++ + E G+ + V A K+++ K F ++ + NL++ NL
Sbjct: 180 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 239
Query: 205 EARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC 264
+ LR+ F G + SA+V+ RS G+GFV F S + A A++ G+++
Sbjct: 240 GIDDERLRKEFSPFG-TITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVAT 296
Query: 265 --LVIALS 270
L +AL+
Sbjct: 297 KPLYVALA 304
>RGD|620369 [details] [associations]
symbol:Hnrnpm "heterogeneous nuclear ribonucleoprotein M"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;TAS] [GO:0003823 "antigen binding" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005681
"spliceosomal complex" evidence=IEA;ISO] [GO:0016363 "nuclear
matrix" evidence=IEA;ISO] [GO:0019904 "protein domain specific
binding" evidence=ISO] [GO:0042382 "paraspeckles" evidence=ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:620369 GO:GO:0003823 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0016363
GO:GO:0000398 eggNOG:COG0724 GeneTree:ENSGT00410000025635 CTD:4670
HOGENOM:HOG000231932 HOVERGEN:HBG054880 KO:K12887
InterPro:IPR024666 PANTHER:PTHR23003:SF6 Pfam:PF11532 EMBL:U32577
EMBL:BC088317 IPI:IPI00209148 IPI:IPI01016435 RefSeq:NP_001103381.1
RefSeq:NP_446328.2 UniGene:Rn.10156 ProteinModelPortal:Q62826
SMR:Q62826 PhosphoSite:Q62826 PRIDE:Q62826
Ensembl:ENSRNOT00000059985 GeneID:116655 KEGG:rno:116655
UCSC:RGD:620369 NextBio:619427 Genevestigator:Q62826
GermOnline:ENSRNOG00000007921 Uniprot:Q62826
Length = 690
Score = 143 (55.4 bits), Expect = 6.2e-07, P = 6.2e-07
Identities = 46/162 (28%), Positives = 76/162 (46%)
Query: 102 RLVAQNVPWTSTHEDIRALF-EQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
R N+P+ + ++ L E+ G V +EL M ++ ++RG A V + A
Sbjct: 71 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEV 130
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGW 220
L + GR LKV ++ +Q +F+ANL ++ K L+E F G
Sbjct: 131 LNKHSLSGRPLKVKEDP-DGEHARRAMQKAGRLGSTVFVANLDYKVGWKKLKEVFSMAGV 189
Query: 221 DVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
VV A+++ D +S G G V+F+ A AIS F G+++
Sbjct: 190 -VVRADIL-EDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLL 229
>UNIPROTKB|F1LV13 [details] [associations]
symbol:Hnrpm "Protein Hnrpm" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0000398 GeneTree:ENSGT00410000025635 CTD:4670 KO:K12887
InterPro:IPR024666 PANTHER:PTHR23003:SF6 Pfam:PF11532
IPI:IPI01016435 RefSeq:NP_446328.2 UniGene:Rn.10156 GeneID:116655
KEGG:rno:116655 NextBio:619427 PRIDE:F1LV13
Ensembl:ENSRNOT00000011047 Uniprot:F1LV13
Length = 690
Score = 143 (55.4 bits), Expect = 6.2e-07, P = 6.2e-07
Identities = 46/162 (28%), Positives = 76/162 (46%)
Query: 102 RLVAQNVPWTSTHEDIRALF-EQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
R N+P+ + ++ L E+ G V +EL M ++ ++RG A V + A
Sbjct: 71 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEV 130
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGW 220
L + GR LKV ++ +Q +F+ANL ++ K L+E F G
Sbjct: 131 LNKHSLSGRPLKVKEDP-DGEHARRAMQKAGRLGSTVFVANLDYKVGWKKLKEVFSMAGV 189
Query: 221 DVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
VV A+++ D +S G G V+F+ A AIS F G+++
Sbjct: 190 -VVRADIL-EDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLL 229
>UNIPROTKB|Q62826 [details] [associations]
symbol:Hnrnpm "Heterogeneous nuclear ribonucleoprotein M"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620369 GO:GO:0003823 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0016363 GO:GO:0000398
eggNOG:COG0724 GeneTree:ENSGT00410000025635 CTD:4670
HOGENOM:HOG000231932 HOVERGEN:HBG054880 KO:K12887
InterPro:IPR024666 PANTHER:PTHR23003:SF6 Pfam:PF11532 EMBL:U32577
EMBL:BC088317 IPI:IPI00209148 IPI:IPI01016435 RefSeq:NP_001103381.1
RefSeq:NP_446328.2 UniGene:Rn.10156 ProteinModelPortal:Q62826
SMR:Q62826 PhosphoSite:Q62826 PRIDE:Q62826
Ensembl:ENSRNOT00000059985 GeneID:116655 KEGG:rno:116655
UCSC:RGD:620369 NextBio:619427 Genevestigator:Q62826
GermOnline:ENSRNOG00000007921 Uniprot:Q62826
Length = 690
Score = 143 (55.4 bits), Expect = 6.2e-07, P = 6.2e-07
Identities = 46/162 (28%), Positives = 76/162 (46%)
Query: 102 RLVAQNVPWTSTHEDIRALF-EQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
R N+P+ + ++ L E+ G V +EL M ++ ++RG A V + A
Sbjct: 71 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEV 130
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGW 220
L + GR LKV ++ +Q +F+ANL ++ K L+E F G
Sbjct: 131 LNKHSLSGRPLKVKEDP-DGEHARRAMQKAGRLGSTVFVANLDYKVGWKKLKEVFSMAGV 189
Query: 221 DVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
VV A+++ D +S G G V+F+ A AIS F G+++
Sbjct: 190 -VVRADIL-EDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLL 229
>ZFIN|ZDB-GENE-000210-17 [details] [associations]
symbol:hug "HuG" species:7955 "Danio rerio"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-000210-17 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR550302 IPI:IPI00998450
ProteinModelPortal:F1QUX1 Ensembl:ENSDART00000122728
ArrayExpress:F1QUX1 Bgee:F1QUX1 Uniprot:F1QUX1
Length = 368
Score = 139 (54.0 bits), Expect = 6.3e-07, P = 6.3e-07
Identities = 42/174 (24%), Positives = 74/174 (42%)
Query: 95 EEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIEL---------SMHSKNRNRGLAF 145
E +KT L+ +P + E++R+LF G V +L + H+ + G F
Sbjct: 50 EPSDAKTNLIINYLPQNMSQEELRSLFSSIGEVESAKLIRDKMAGMSAHHTLGHSLGYGF 109
Query: 146 VTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFE 205
V +P +A A+N L + +T+KV+YA+ NL+I+ L
Sbjct: 110 VNYVNPSDAERAINTLNGLRLQSKTIKVSYARPSSDG---------IKDANLYISGLPKT 160
Query: 206 ARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
K++ + F G ++++ ++ S G F+ F + AE AI G
Sbjct: 161 MTQKNVEDMFTQYG-RIINSRILVDQASGLSRGVAFIRFDKRSEAEEAIKDLNG 213
>UNIPROTKB|F1SA50 [details] [associations]
symbol:HNRNPM "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0042382 "paraspeckles" evidence=IEA] [GO:0019904 "protein
domain specific binding" evidence=IEA] [GO:0016363 "nuclear matrix"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0016363 GO:GO:0071013 GO:GO:0000380 GO:GO:0042382
GeneTree:ENSGT00410000025635 OMA:PGIERMA InterPro:IPR024666
PANTHER:PTHR23003:SF6 Pfam:PF11532 EMBL:FP090904
Ensembl:ENSSSCT00000014856 Uniprot:F1SA50
Length = 704
Score = 143 (55.4 bits), Expect = 6.3e-07, P = 6.3e-07
Identities = 46/162 (28%), Positives = 76/162 (46%)
Query: 102 RLVAQNVPWTSTHEDIRALF-EQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
R N+P+ + ++ L E+ G V +EL M ++ ++RG A V + A
Sbjct: 85 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEV 144
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGW 220
L + GR LKV ++ +Q +F+ANL ++ K L+E F G
Sbjct: 145 LNKHSLSGRPLKVKEDP-DGEHARRAMQKAGRLGSTVFVANLDYKVGWKKLKEVFSMAGV 203
Query: 221 DVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
VV A+++ D +S G G V+F+ A AIS F G+++
Sbjct: 204 -VVRADIL-EDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLL 243
>RGD|1305742 [details] [associations]
symbol:Tia1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA;ISO] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO] [GO:0017148 "negative regulation of
translation" evidence=IEA;ISO] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA;ISO] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CH473957 eggNOG:COG0724
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 EMBL:BC087064 IPI:IPI00563419
RefSeq:NP_001012096.1 UniGene:Rn.198158 SMR:Q5PQR7 STRING:Q5PQR7
Ensembl:ENSRNOT00000023103 GeneID:312510 KEGG:rno:312510
UCSC:RGD:1305742 NextBio:664964 Genevestigator:Q5PQR7
Uniprot:Q5PQR7
Length = 375
Score = 139 (54.0 bits), Expect = 6.5e-07, P = 6.5e-07
Identities = 52/167 (31%), Positives = 76/167 (45%)
Query: 95 EEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEA 154
E+E KT V N+ T I LF Q G + ++ M + N FV A
Sbjct: 2 EDEMPKTLYVG-NLSRDVTEALILQLFSQIGPCKNCKMIMDTAG-NDPYCFVEFHEHRHA 59
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFAT-FNLFIANLSFEARAKDLRE 213
AAL + + G+ +KVN+A P Q K + F++F+ +LS E +D++
Sbjct: 60 AAALAAMNGRKIMGKEVKVNWATT------PSSQKKDTSNHFHVFVGDLSPEITTEDIKA 113
Query: 214 FFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
F G + A V+ +S GYGFVSF +K AE AI G+
Sbjct: 114 AFAPFG-RISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQ 159
>MGI|MGI:1349722 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
CleanEx:MM_PABPC1 Genevestigator:P29341
GermOnline:ENSMUSG00000022283 Uniprot:P29341
Length = 636
Score = 142 (55.0 bits), Expect = 7.1e-07, P = 7.1e-07
Identities = 46/188 (24%), Positives = 89/188 (47%)
Query: 94 REEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDE 153
R +E+ T + +N E ++ LF + G L +++ +++G FV+ ++
Sbjct: 186 RAKEF--TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 154 ATAALNNLESYEFEGRTLKVNYA--KIKK----KNPFPPVQPKPFATF---NLFIANLSF 204
A A++ + E G+ + V A K+++ K F ++ + NL++ NL
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 205 EARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC 264
+ LR+ F G + SA+V+ RS G+GFV F S + A A++ G+++
Sbjct: 304 GIDDERLRKEFSPFG-TITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 265 --LVIALS 270
L +AL+
Sbjct: 361 KPLYVALA 368
Score = 124 (48.7 bits), Expect = 7.9e-05, P = 7.9e-05
Identities = 38/143 (26%), Positives = 71/143 (49%)
Query: 121 FEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179
F G +L I + R+ G A+V P +A AL+ + +G+ +++ +++
Sbjct: 31 FSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ-- 88
Query: 180 KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
++P + N+FI NL K L + F + G +++S +V+ +N S GY
Sbjct: 89 -RDP----SLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCKVVCDENG--SKGY 140
Query: 240 GFVSFKSKKVAETAISAFQGKVI 262
GFV F++++ AE AI G ++
Sbjct: 141 GFVHFETQEAAERAIEKMNGMLL 163
>RGD|619838 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
Length = 636
Score = 142 (55.0 bits), Expect = 7.1e-07, P = 7.1e-07
Identities = 46/188 (24%), Positives = 89/188 (47%)
Query: 94 REEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDE 153
R +E+ T + +N E ++ LF + G L +++ +++G FV+ ++
Sbjct: 186 RAKEF--TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 154 ATAALNNLESYEFEGRTLKVNYA--KIKK----KNPFPPVQPKPFATF---NLFIANLSF 204
A A++ + E G+ + V A K+++ K F ++ + NL++ NL
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 205 EARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC 264
+ LR+ F G + SA+V+ RS G+GFV F S + A A++ G+++
Sbjct: 304 GIDDERLRKEFSPFG-TITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 265 --LVIALS 270
L +AL+
Sbjct: 361 KPLYVALA 368
Score = 124 (48.7 bits), Expect = 7.9e-05, P = 7.9e-05
Identities = 38/143 (26%), Positives = 71/143 (49%)
Query: 121 FEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179
F G +L I + R+ G A+V P +A AL+ + +G+ +++ +++
Sbjct: 31 FSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ-- 88
Query: 180 KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
++P + N+FI NL K L + F + G +++S +V+ +N S GY
Sbjct: 89 -RDP----SLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCKVVCDENG--SKGY 140
Query: 240 GFVSFKSKKVAETAISAFQGKVI 262
GFV F++++ AE AI G ++
Sbjct: 141 GFVHFETQEAAERAIEKMNGMLL 163
>DICTYBASE|DDB_G0293558 [details] [associations]
symbol:pabpc1A "polyadenylate binding protein (PABP)"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0293558 GO:GO:0005634 GO:GO:0045335
GenomeReviews:CM000155_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 EMBL:AAFI02000218 eggNOG:COG0724 GO:GO:0008143
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HSSP:P11940 OMA:ITEKNQQ RefSeq:XP_629007.1
ProteinModelPortal:Q54BM2 SMR:Q54BM2 STRING:Q54BM2 PRIDE:Q54BM2
EnsemblProtists:DDB0233359 GeneID:8629291 KEGG:ddi:DDB_G0293558
ProtClustDB:CLSZ2846557 Uniprot:Q54BM2
Length = 565
Score = 141 (54.7 bits), Expect = 7.7e-07, P = 7.7e-07
Identities = 40/168 (23%), Positives = 73/168 (43%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATA 156
E T + +N+ + ++ L +Q+G + +I + K +++G F S + A
Sbjct: 184 EVKFTNVFFKNLSEDVGPDQLKELLQQYGEITNITIMADDKGKSKGFGFANFESAEAAKN 243
Query: 157 ALNNLESYEFEGRTLKVNYA--KIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
+ N F G+ + A KI+++ + NL+I N+ LRE
Sbjct: 244 VVENENGKIFHGKPIYAGRAQKKIEREAELKHTFETKYQGVNLYIKNIDDSIDNDKLREV 303
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
F G + SA V+ D S G+GFV + + A A++ G++I
Sbjct: 304 FSQFG-TITSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTEMNGRMI 350
Score = 123 (48.4 bits), Expect = 8.7e-05, P = 8.7e-05
Identities = 40/179 (22%), Positives = 75/179 (41%)
Query: 86 AAAVNTEQREEEYSKT---RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRG 142
A + QR+ K+ + +N+ H+ + F G +L ++ N ++G
Sbjct: 80 ACRIMWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILSCKVVTDDGNSSKG 139
Query: 143 LAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANL 202
FV + + A A+ + G+ + V K K+ QP N+F NL
Sbjct: 140 FGFVHYETQESADKAIAKVNGMMINGQKVFVGPFKSSKERG----QPTEVKFTNVFFKNL 195
Query: 203 SFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKV 261
S + L+E G ++ + I D+ +S G+GF +F+S + A+ + GK+
Sbjct: 196 SEDVGPDQLKELLQQYG-EITNI-TIMADDKGKSKGFGFANFESAEAAKNVVENENGKI 252
>UNIPROTKB|Q60A61 [details] [associations]
symbol:MCA1010 "RNA-binding protein" species:243233
"Methylococcus capsulatus str. Bath" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE017282
GenomeReviews:AE017282_GR HOGENOM:HOG000276232 RefSeq:YP_113486.1
ProteinModelPortal:Q60A61 GeneID:3102652 KEGG:mca:MCA1010
PATRIC:22605822 OMA:LAFHSTE Uniprot:Q60A61
Length = 95
Score = 118 (46.6 bits), Expect = 7.9e-07, P = 7.9e-07
Identities = 28/78 (35%), Positives = 41/78 (52%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAALN 159
++L N+ + D+ F +GTV ++ M + R+RG FV MGS EA AA+
Sbjct: 3 SKLYVGNLNYRVGDADLERTFAAYGTVKSAQVVMDRATGRSRGFGFVEMGSDQEAQAAIA 62
Query: 160 NLESYEFEGRTLKVNYAK 177
L E +GR L VN A+
Sbjct: 63 GLNGKEMDGRNLMVNEAR 80
Score = 97 (39.2 bits), Expect = 0.00017, P = 0.00017
Identities = 23/64 (35%), Positives = 34/64 (53%)
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
L++ NL++ DL F + G V SA+V+ RS G+GFV S + A+ AI+
Sbjct: 5 LYVGNLNYRVGDADLERTFAAYG-TVKSAQVVMDRATGRSRGFGFVEMGSDQEAQAAIAG 63
Query: 257 FQGK 260
GK
Sbjct: 64 LNGK 67
>UNIPROTKB|E7EQV3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00977833
ProteinModelPortal:E7EQV3 SMR:E7EQV3 Ensembl:ENST00000519004
ArrayExpress:E7EQV3 Bgee:E7EQV3 Uniprot:E7EQV3
Length = 591
Score = 141 (54.7 bits), Expect = 8.3e-07, P = 8.3e-07
Identities = 46/188 (24%), Positives = 89/188 (47%)
Query: 94 REEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDE 153
R +E+ T + +N E ++ LF + G L +++ +++G FV+ ++
Sbjct: 141 RAKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 198
Query: 154 ATAALNNLESYEFEGRTLKVNYA--KIKK----KNPFPPVQPKPFATF---NLFIANLSF 204
A A++ + E G+ + V A K+++ K F ++ + NL++ NL
Sbjct: 199 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 258
Query: 205 EARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC 264
+ LR+ F G + SA+V+ RS G+GFV F S + A A++ G+++
Sbjct: 259 GIDDERLRKEFSPFG-TITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVAT 315
Query: 265 --LVIALS 270
L +AL+
Sbjct: 316 KPLYVALA 323
Score = 118 (46.6 bits), Expect = 0.00034, P = 0.00034
Identities = 34/124 (27%), Positives = 65/124 (52%)
Query: 139 RNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLF 198
R+ G A+V P +A AL+ + +G+ +++ +++ ++P + N+F
Sbjct: 5 RSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ---RDP----SLRKSGVGNIF 57
Query: 199 IANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ 258
I NL K L + F + G +++S +V+ +N S GYGFV F++++ AE AI
Sbjct: 58 IKNLDKSIDNKALYDTFSAFG-NILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMN 114
Query: 259 GKVI 262
G ++
Sbjct: 115 GMLL 118
>UNIPROTKB|E7ERJ7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00909378
ProteinModelPortal:E7ERJ7 SMR:E7ERJ7 PRIDE:E7ERJ7
Ensembl:ENST00000522387 UCSC:uc011lhc.1 ArrayExpress:E7ERJ7
Bgee:E7ERJ7 Uniprot:E7ERJ7
Length = 604
Score = 141 (54.7 bits), Expect = 8.6e-07, P = 8.6e-07
Identities = 46/188 (24%), Positives = 89/188 (47%)
Query: 94 REEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDE 153
R +E+ T + +N E ++ LF + G L +++ +++G FV+ ++
Sbjct: 154 RAKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 211
Query: 154 ATAALNNLESYEFEGRTLKVNYA--KIKK----KNPFPPVQPKPFATF---NLFIANLSF 204
A A++ + E G+ + V A K+++ K F ++ + NL++ NL
Sbjct: 212 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 271
Query: 205 EARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC 264
+ LR+ F G + SA+V+ RS G+GFV F S + A A++ G+++
Sbjct: 272 GIDDERLRKEFSPFG-TITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVAT 328
Query: 265 --LVIALS 270
L +AL+
Sbjct: 329 KPLYVALA 336
>ZFIN|ZDB-GENE-030131-5836 [details] [associations]
symbol:pabpc1l "poly(A) binding protein,
cytoplasmic 1-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-5836 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 CTD:80336
HSSP:P11940 EMBL:BC044513 IPI:IPI00863260 RefSeq:NP_956133.1
UniGene:Dr.14309 ProteinModelPortal:Q803E7 SMR:Q803E7 PRIDE:Q803E7
GeneID:327625 KEGG:dre:327625 NextBio:20810113 ArrayExpress:Q803E7
Bgee:Q803E7 Uniprot:Q803E7
Length = 620
Score = 141 (54.7 bits), Expect = 8.9e-07, P = 8.9e-07
Identities = 50/195 (25%), Positives = 89/195 (45%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDI-----RALFEQHGTVLDIELSMHSKNRNRGLAFV 146
++RE E + NV + EDI + +F + G L + + + R+RG FV
Sbjct: 177 KEREAEMGAKAVEFTNVYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDERGRSRGFGFV 236
Query: 147 TMGSPDEATAALNNLESYEFEGRTLKVNYA--KIKK----KNPFPPVQPKPFATF---NL 197
+ +A A+ + E GR L V A ++++ K F ++ + + NL
Sbjct: 237 NFVNHGDARRAVTEMNGKELNGRVLYVGRAQKRLERQGELKRKFEQIKQERIQRYQGVNL 296
Query: 198 FIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAF 257
++ NL + LR+ F G + SA+V+ S G+GFV F S + A A++
Sbjct: 297 YVKNLDDSIDDEKLRKEFAPYG-TITSAKVMTDGG--HSRGFGFVCFSSPEEATKAVTEM 353
Query: 258 QGKVIMC--LVIALS 270
G+++ L +AL+
Sbjct: 354 NGRIVSTKPLYVALA 368
Score = 119 (46.9 bits), Expect = 0.00028, P = 0.00028
Identities = 37/144 (25%), Positives = 73/144 (50%)
Query: 121 FEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYE-FEGRTLKVNYAKI 178
F G ++ I + R+ G A++ P +A AL+ + +YE +GR +++ +++
Sbjct: 31 FSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAECALDTM-NYEVIKGRPIRIMWSQ- 88
Query: 179 KKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAG 238
++P + N+FI N+ K L + F + G +++S +V+ +N S G
Sbjct: 89 --RDP----GLRKSGVGNIFIKNMDESIDNKALYDTFSAFG-NILSCKVVCDENG--SKG 139
Query: 239 YGFVSFKSKKVAETAISAFQGKVI 262
YGFV F++++ A AI G ++
Sbjct: 140 YGFVHFETQEAANRAIETMNGMLL 163
>UNIPROTKB|P61286 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9913 "Bos taurus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
Length = 636
Score = 141 (54.7 bits), Expect = 9.2e-07, P = 9.2e-07
Identities = 46/188 (24%), Positives = 89/188 (47%)
Query: 94 REEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDE 153
R +E+ T + +N E ++ LF + G L +++ +++G FV+ ++
Sbjct: 186 RAKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 154 ATAALNNLESYEFEGRTLKVNYA--KIKK----KNPFPPVQPKPFATF---NLFIANLSF 204
A A++ + E G+ + V A K+++ K F ++ + NL++ NL
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 205 EARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC 264
+ LR+ F G + SA+V+ RS G+GFV F S + A A++ G+++
Sbjct: 304 GIDDERLRKEFSPFG-TITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 265 --LVIALS 270
L +AL+
Sbjct: 361 KPLYVALA 368
Score = 124 (48.7 bits), Expect = 7.9e-05, P = 7.9e-05
Identities = 38/143 (26%), Positives = 71/143 (49%)
Query: 121 FEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179
F G +L I + R+ G A+V P +A AL+ + +G+ +++ +++
Sbjct: 31 FSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ-- 88
Query: 180 KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
++P + N+FI NL K L + F + G +++S +V+ +N S GY
Sbjct: 89 -RDP----SLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCKVVCDENG--SKGY 140
Query: 240 GFVSFKSKKVAETAISAFQGKVI 262
GFV F++++ AE AI G ++
Sbjct: 141 GFVHFETQEAAERAIEKMNGMLL 163
>UNIPROTKB|J9P326 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
KEGG:cfa:612751 Uniprot:J9P326
Length = 636
Score = 141 (54.7 bits), Expect = 9.2e-07, P = 9.2e-07
Identities = 46/188 (24%), Positives = 89/188 (47%)
Query: 94 REEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDE 153
R +E+ T + +N E ++ LF + G L +++ +++G FV+ ++
Sbjct: 186 RAKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 154 ATAALNNLESYEFEGRTLKVNYA--KIKK----KNPFPPVQPKPFATF---NLFIANLSF 204
A A++ + E G+ + V A K+++ K F ++ + NL++ NL
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 205 EARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC 264
+ LR+ F G + SA+V+ RS G+GFV F S + A A++ G+++
Sbjct: 304 GIDDERLRKEFSPFG-TITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 265 --LVIALS 270
L +AL+
Sbjct: 361 KPLYVALA 368
Score = 124 (48.7 bits), Expect = 7.9e-05, P = 7.9e-05
Identities = 38/143 (26%), Positives = 71/143 (49%)
Query: 121 FEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179
F G +L I + R+ G A+V P +A AL+ + +G+ +++ +++
Sbjct: 31 FSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ-- 88
Query: 180 KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
++P + N+FI NL K L + F + G +++S +V+ +N S GY
Sbjct: 89 -RDP----SLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCKVVCDENG--SKGY 140
Query: 240 GFVSFKSKKVAETAISAFQGKVI 262
GFV F++++ AE AI G ++
Sbjct: 141 GFVHFETQEAAERAIEKMNGMLL 163
>UNIPROTKB|P11940 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
evidence=TAS] [GO:0008494 "translation activator activity"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
regulation of nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
Length = 636
Score = 141 (54.7 bits), Expect = 9.2e-07, P = 9.2e-07
Identities = 46/188 (24%), Positives = 89/188 (47%)
Query: 94 REEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDE 153
R +E+ T + +N E ++ LF + G L +++ +++G FV+ ++
Sbjct: 186 RAKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 154 ATAALNNLESYEFEGRTLKVNYA--KIKK----KNPFPPVQPKPFATF---NLFIANLSF 204
A A++ + E G+ + V A K+++ K F ++ + NL++ NL
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 205 EARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC 264
+ LR+ F G + SA+V+ RS G+GFV F S + A A++ G+++
Sbjct: 304 GIDDERLRKEFSPFG-TITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 265 --LVIALS 270
L +AL+
Sbjct: 361 KPLYVALA 368
Score = 124 (48.7 bits), Expect = 7.9e-05, P = 7.9e-05
Identities = 38/143 (26%), Positives = 71/143 (49%)
Query: 121 FEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179
F G +L I + R+ G A+V P +A AL+ + +G+ +++ +++
Sbjct: 31 FSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ-- 88
Query: 180 KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
++P + N+FI NL K L + F + G +++S +V+ +N S GY
Sbjct: 89 -RDP----SLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCKVVCDENG--SKGY 140
Query: 240 GFVSFKSKKVAETAISAFQGKVI 262
GFV F++++ AE AI G ++
Sbjct: 141 GFVHFETQEAAERAIEKMNGMLL 163
>UNIPROTKB|F2Z557 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
Uniprot:F2Z557
Length = 636
Score = 141 (54.7 bits), Expect = 9.2e-07, P = 9.2e-07
Identities = 46/188 (24%), Positives = 89/188 (47%)
Query: 94 REEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDE 153
R +E+ T + +N E ++ LF + G L +++ +++G FV+ ++
Sbjct: 186 RAKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 154 ATAALNNLESYEFEGRTLKVNYA--KIKK----KNPFPPVQPKPFATF---NLFIANLSF 204
A A++ + E G+ + V A K+++ K F ++ + NL++ NL
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 205 EARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC 264
+ LR+ F G + SA+V+ RS G+GFV F S + A A++ G+++
Sbjct: 304 GIDDERLRKEFSPFG-TITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 265 --LVIALS 270
L +AL+
Sbjct: 361 KPLYVALA 368
Score = 124 (48.7 bits), Expect = 7.9e-05, P = 7.9e-05
Identities = 38/143 (26%), Positives = 71/143 (49%)
Query: 121 FEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179
F G +L I + R+ G A+V P +A AL+ + +G+ +++ +++
Sbjct: 31 FSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ-- 88
Query: 180 KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
++P + N+FI NL K L + F + G +++S +V+ +N S GY
Sbjct: 89 -RDP----SLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCKVVCDENG--SKGY 140
Query: 240 GFVSFKSKKVAETAISAFQGKVI 262
GFV F++++ AE AI G ++
Sbjct: 141 GFVHFETQEAAERAIEKMNGMLL 163
>UNIPROTKB|Q5R8F7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
InParanoid:Q5R8F7 Uniprot:Q5R8F7
Length = 636
Score = 141 (54.7 bits), Expect = 9.2e-07, P = 9.2e-07
Identities = 46/188 (24%), Positives = 89/188 (47%)
Query: 94 REEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDE 153
R +E+ T + +N E ++ LF + G L +++ +++G FV+ ++
Sbjct: 186 RAKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 154 ATAALNNLESYEFEGRTLKVNYA--KIKK----KNPFPPVQPKPFATF---NLFIANLSF 204
A A++ + E G+ + V A K+++ K F ++ + NL++ NL
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 205 EARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC 264
+ LR+ F G + SA+V+ RS G+GFV F S + A A++ G+++
Sbjct: 304 GIDDERLRKEFSPFG-TITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 265 --LVIALS 270
L +AL+
Sbjct: 361 KPLYVALA 368
Score = 124 (48.7 bits), Expect = 7.9e-05, P = 7.9e-05
Identities = 38/143 (26%), Positives = 71/143 (49%)
Query: 121 FEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179
F G +L I + R+ G A+V P +A AL+ + +G+ +++ +++
Sbjct: 31 FSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ-- 88
Query: 180 KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
++P + N+FI NL K L + F + G +++S +V+ +N S GY
Sbjct: 89 -RDP----SLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCKVVCDENG--SKGY 140
Query: 240 GFVSFKSKKVAETAISAFQGKVI 262
GFV F++++ AE AI G ++
Sbjct: 141 GFVHFETQEAAERAIEKMNGMLL 163
>UNIPROTKB|I3LS00 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
Uniprot:I3LS00
Length = 647
Score = 141 (54.7 bits), Expect = 9.4e-07, P = 9.4e-07
Identities = 46/188 (24%), Positives = 89/188 (47%)
Query: 94 REEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDE 153
R +E+ T + +N E ++ LF + G L +++ +++G FV+ ++
Sbjct: 186 RAKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 154 ATAALNNLESYEFEGRTLKVNYA--KIKK----KNPFPPVQPKPFATF---NLFIANLSF 204
A A++ + E G+ + V A K+++ K F ++ + NL++ NL
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 205 EARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC 264
+ LR+ F G + SA+V+ RS G+GFV F S + A A++ G+++
Sbjct: 304 GIDDERLRKEFSPFG-TITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 265 --LVIALS 270
L +AL+
Sbjct: 361 KPLYVALA 368
Score = 124 (48.7 bits), Expect = 8.0e-05, P = 8.0e-05
Identities = 38/143 (26%), Positives = 71/143 (49%)
Query: 121 FEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179
F G +L I + R+ G A+V P +A AL+ + +G+ +++ +++
Sbjct: 31 FSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ-- 88
Query: 180 KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
++P + N+FI NL K L + F + G +++S +V+ +N S GY
Sbjct: 89 -RDP----SLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCKVVCDENG--SKGY 140
Query: 240 GFVSFKSKKVAETAISAFQGKVI 262
GFV F++++ AE AI G ++
Sbjct: 141 GFVHFETQEAAERAIEKMNGMLL 163
>MGI|MGI:1330294 [details] [associations]
symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001837 "epithelial to mesenchymal transition"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003688 "DNA
replication origin binding" evidence=ISO] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=IDA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1330294 GO:GO:0005634
GO:GO:0005737 GO:GO:0045893 GO:GO:0000166 GO:GO:0003677
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
GO:GO:0001837 UniGene:Mm.490267 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 OrthoDB:EOG42BX9K
ChiTaRS:HNRNPAB EMBL:D90151 EMBL:L36663 EMBL:AK076132
IPI:IPI00117288 PIR:JQ0448 RefSeq:NP_034578.1 UniGene:Mm.280842
ProteinModelPortal:Q99020 SMR:Q99020 DIP:DIP-31415N IntAct:Q99020
MINT:MINT-4132837 STRING:Q99020 PhosphoSite:Q99020 PaxDb:Q99020
PRIDE:Q99020 Ensembl:ENSMUST00000074669 GeneID:15384 KEGG:mmu:15384
NextBio:288056 Bgee:Q99020 Genevestigator:Q99020
GermOnline:ENSMUSG00000020358 Uniprot:Q99020
Length = 285
Score = 135 (52.6 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 45/192 (23%), Positives = 82/192 (42%)
Query: 75 TTQDPFVDSSSAAA--VNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIEL 132
TT P + + A +N + EE+ K + + W ++ +D++ F + G V+D +
Sbjct: 49 TTTAPSGNQNGAEGDQINASKNEEDAGK--MFVGGLSWDTSKKDLKDYFTKFGEVVDCTI 106
Query: 133 SMH-SKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKP 191
M + R+RG F+ L+ E + +GR + A KK+P +
Sbjct: 107 KMDPNTGRSRGFGFILFKDSSSVEKVLDQKE-HRLDGRVIDPKKAMAMKKDPVKKI---- 161
Query: 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKS----K 247
F+ L+ EA + +RE+F G ++ + E+ + G+ F++FK K
Sbjct: 162 ------FVGGLNPEATEEKIREYFGQFG-EIEAIELPIDPKLNKRRGFVFITFKEEDPVK 214
Query: 248 KVAETAISAFQG 259
KV E G
Sbjct: 215 KVLEKKFHTVSG 226
>UNIPROTKB|Q9QX80 [details] [associations]
symbol:Hnrnpab "Hnrpab protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295
HSSP:Q14103 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 EMBL:AC105470
EMBL:AF216753 EMBL:BC066664 EMBL:AJ238855 IPI:IPI00212723
PIR:PC4375 PIR:PC4376 PIR:PC4377 RefSeq:NP_112620.2
RefSeq:XP_003750864.1 UniGene:Rn.1427 UniGene:Rn.217734 SMR:Q9QX80
STRING:Q9QX80 Ensembl:ENSRNOT00000033056 GeneID:100910156
GeneID:83498 KEGG:rno:100910156 KEGG:rno:83498 NextBio:615904
Genevestigator:Q9QX80 Uniprot:Q9QX80
Length = 285
Score = 135 (52.6 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 45/192 (23%), Positives = 82/192 (42%)
Query: 75 TTQDPFVDSSSAAA--VNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIEL 132
TT P + + A +N + EE+ K + + W ++ +D++ F + G V+D +
Sbjct: 49 TTAAPSGNQNGAEGDQINASKNEEDAGK--MFVGGLSWDTSKKDLKDYFTKFGEVVDCTI 106
Query: 133 SMH-SKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKP 191
M + R+RG F+ L+ E + +GR + A KK+P +
Sbjct: 107 KMDPNTGRSRGFGFILFKDSSSVEKVLDQKE-HRLDGRVIDPKKAMAMKKDPVKKI---- 161
Query: 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKS----K 247
F+ L+ EA + +RE+F G ++ + E+ + G+ F++FK K
Sbjct: 162 ------FVGGLNPEATEEKIREYFGQFG-EIEAIELPIDPKLNKRRGFVFITFKEEDPVK 214
Query: 248 KVAETAISAFQG 259
KV E G
Sbjct: 215 KVLEKKFHTVSG 226
>UNIPROTKB|E7ETJ9 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC012468 HGNC:HGNC:11804
ChiTaRS:TIAL1 IPI:IPI00647436 ProteinModelPortal:E7ETJ9 SMR:E7ETJ9
Ensembl:ENST00000412524 ArrayExpress:E7ETJ9 Bgee:E7ETJ9
Uniprot:E7ETJ9
Length = 132
Score = 117 (46.2 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 39/122 (31%), Positives = 58/122 (47%)
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFAT-FNLF 198
N FV +A AAL + + G+ +KVN+A P Q K + F++F
Sbjct: 8 NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATT------PSSQKKDTSNHFHVF 61
Query: 199 IANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ 258
+ +LS E +D++ F G + A V+ +S GYGFVSF +K AE AI
Sbjct: 62 VGDLSPEITTEDIKSAFAPFG-KISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMG 120
Query: 259 GK 260
G+
Sbjct: 121 GQ 122
>FB|FBgn0260456 [details] [associations]
symbol:CG4806 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE013599 GO:GO:0022008 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 HSSP:Q9V535
GeneTree:ENSGT00550000074976 KO:K14573 OMA:MHALECL ChiTaRS:CG33228
FlyBase:FBgn0260456 EMBL:BT023833 RefSeq:NP_611955.2
UniGene:Dm.2200 SMR:Q9W124 STRING:Q9W124 EnsemblMetazoa:FBtr0072332
GeneID:37948 KEGG:dme:Dmel_CG4806 UCSC:CG4806-RA InParanoid:Q9W124
GenomeRNAi:37948 NextBio:806205 Uniprot:Q9W124
Length = 657
Score = 118 (46.6 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 34/107 (31%), Positives = 54/107 (50%)
Query: 92 EQREEEYSK-TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGS 150
E++E K RL+ +N+ + ST + +R F Q GT+ D+ + + G AFV +
Sbjct: 38 EEKERRQKKRARLIVRNISYKSTEDSLREHFGQWGTLEDVHILKRGDGKLVGCAFVQYET 97
Query: 151 PDEATAALNNLESYEFEGRTLKVNYAKIK----KKNPFP--PVQPKP 191
++AT A+ N E GR + V++A K KNP P + KP
Sbjct: 98 INQATKAILNSNGKELLGRKVFVDWALGKDEYVSKNPKDEEPDEKKP 144
Score = 66 (28.3 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 21/61 (34%), Positives = 31/61 (50%)
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPR-RSAGYGFVSFKSKKVAETAIS 255
+FI N+ F+A DLR+ G +VS +I S G FV FK+K+ A+ +
Sbjct: 232 VFIKNVPFDAEDADLRKACRKFG--LVSYAIINRQAVSGHSKGTAFVKFKAKESADLCLQ 289
Query: 256 A 256
A
Sbjct: 290 A 290
Score = 43 (20.2 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 9/25 (36%), Positives = 18/25 (72%)
Query: 231 DNPR-RSAGYGFVSFKSKKVAETAI 254
++P+ +S G+GF+SF + + A A+
Sbjct: 420 EHPQGKSKGFGFLSFDTHQRALAAL 444
>UNIPROTKB|O43347 [details] [associations]
symbol:MSI1 "RNA-binding protein Musashi homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0009725 "response to
hormone stimulus" evidence=IEA] [GO:0030855 "epithelial cell
differentiation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0007399 "nervous system development"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0007399 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
EMBL:AB012851 EMBL:AC003982 EMBL:AB072590 EMBL:AB072591
EMBL:AB072592 EMBL:AB073212 IPI:IPI00001007 RefSeq:NP_002433.1
UniGene:Hs.158311 ProteinModelPortal:O43347 SMR:O43347
IntAct:O43347 MINT:MINT-1432501 STRING:O43347 PhosphoSite:O43347
PaxDb:O43347 PRIDE:O43347 DNASU:4440 Ensembl:ENST00000257552
GeneID:4440 KEGG:hsa:4440 UCSC:uc001tye.1 CTD:4440
GeneCards:GC12M120779 HGNC:HGNC:7330 HPA:CAB022337 MIM:603328
neXtProt:NX_O43347 PharmGKB:PA31137 InParanoid:O43347 OMA:GLPGSHP
OrthoDB:EOG48GW3J GenomeRNAi:4440 NextBio:17313 ArrayExpress:O43347
Bgee:O43347 CleanEx:HS_MSI1 Genevestigator:O43347
GermOnline:ENSG00000135097 Uniprot:O43347
Length = 362
Score = 137 (53.3 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 50/179 (27%), Positives = 79/179 (44%)
Query: 95 EEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPD 152
+ + ++ + W +T E +R F Q G V + L M R+RG FVT D
Sbjct: 14 DSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKEC-LVMRDPLTKRSRGFGFVTF--MD 70
Query: 153 EATAALNNLES-YEFEGRTLKVNYAKIKKKNPFPP-VQPKPFA-TFNLFIANLSFEARAK 209
+A +S +E + +T I K FP QPK T +F+ LS +
Sbjct: 71 QAGVDKVLAQSRHELDSKT-------IDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVE 123
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSK----KVAETAISAFQGKVIMC 264
D++++F G V A ++F R G+GFV+F+S+ KV E K++ C
Sbjct: 124 DVKQYFEQFG-KVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVEC 181
>DICTYBASE|DDB_G0291486 [details] [associations]
symbol:DDB_G0291486 "putative splicing regulator"
species:44689 "Dictyostelium discoideum" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0291486 EMBL:AAFI02000177
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG251494
RefSeq:XP_635247.1 ProteinModelPortal:Q54EJ3
EnsemblProtists:DDB0233674 GeneID:8628193 KEGG:ddi:DDB_G0291486
InParanoid:Q54EJ3 OMA:PMGNGMN Uniprot:Q54EJ3
Length = 489
Score = 124 (48.7 bits), Expect = 5.4e-05, P = 5.4e-05
Identities = 45/163 (27%), Positives = 75/163 (46%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALN 159
T+L +P + E+I+ LF + + L + + N +G AFV++ S +EA A+
Sbjct: 3 TKLFVGQIPKSFNEEEIKNLFTNIANIESVSLIKNKTTNEPQGCAFVSVPSREEADRAIE 62
Query: 160 NLE-SYEFEG--RTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFI 216
L S +F+G L+V YA +++ A+ LF+ L + +RE F
Sbjct: 63 QLHNSKKFQGVLNNLQVKYADSEQEK---------LAS-KLFVGMLPRSYEEEQIRELFE 112
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
G VV I S G GF+ F +++ A +AI+ G
Sbjct: 113 PHG--VVEDICILRGPNSESKGCGFIKFDNRESALSAIATLNG 153
Score = 98 (39.6 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 25/88 (28%), Positives = 43/88 (48%)
Query: 95 EEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEA 154
E+E ++L +P + E IR LFE HG V DI + + ++G F+ + + A
Sbjct: 85 EQEKLASKLFVGMLPRSYEEEQIRELFEPHGVVEDICILRGPNSESKGCGFIKFDNRESA 144
Query: 155 TAALNNLESYEFEG--RTLKVNYAKIKK 180
+A+ L + +G L V +A +K
Sbjct: 145 LSAIATLNGMKLDGSPNPLVVKFADTEK 172
Score = 85 (35.0 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 196 NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
NLF+ N+ DL F G VVSA+V N S G+GFVS+ + A AIS
Sbjct: 404 NLFVYNIPNYFSDNDLLGLFQQYGI-VVSAKVYVDKNTGVSKGFGFVSYDNPASANLAIS 462
Query: 256 AFQGKVI 262
G+++
Sbjct: 463 NLHGQMM 469
>TAIR|locus:2065190 [details] [associations]
symbol:AT2G47310 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR001202
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00397 PROSITE:PS01159
PROSITE:PS50020 PROSITE:PS50102 SMART:SM00360 SMART:SM00456
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:2.20.70.10 SUPFAM:SSF51045
EMBL:BT015132 EMBL:BT015799 EMBL:AK229352 IPI:IPI00531580
RefSeq:NP_850472.1 UniGene:At.36378 ProteinModelPortal:Q6AWW6
SMR:Q6AWW6 PRIDE:Q6AWW6 EnsemblPlants:AT2G47310.1 GeneID:819344
KEGG:ath:AT2G47310 TAIR:At2g47310 HOGENOM:HOG000084673
InParanoid:Q6AWW6 OMA:RERIGFA PhylomeDB:Q6AWW6
ProtClustDB:CLSN2918289 Genevestigator:Q6AWW6 Uniprot:Q6AWW6
Length = 512
Score = 139 (54.0 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 48/166 (28%), Positives = 77/166 (46%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGL-AFVTMGSPDEATAA 157
S +L + T+T DIR +FE++G V +I L R F+ +E AA
Sbjct: 108 SIAKLYVAPISKTATEYDIRQVFEKYGNVTEIILPKDKMTGERAAYCFIKYKKVEEGNAA 167
Query: 158 LNNL-ESYEFEGRTL--KVNYAKIKKKN-PFPPVQPKPFATFNLFIANLSFEARAKDLRE 213
+ L E + F G L KV +A+ +++ F PVQ P L++ L+ + ++ E
Sbjct: 168 IAALTEQFTFPGEMLPVKVRFAEAERERIGFAPVQ-LPDNP-KLYVRCLNKQTTKMEVNE 225
Query: 214 FFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
F G ++ + D+ + GY FV F K++A AI A G
Sbjct: 226 VFSRYG--IIEDIYMALDDMKICRGYAFVQFSCKEMALAAIKALNG 269
>UNIPROTKB|F1MS42 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0005844
"polysome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 GeneTree:ENSGT00700000104255 OMA:GLPGSHP
EMBL:DAAA02045450 EMBL:DAAA02045451 IPI:IPI00718423
Ensembl:ENSBTAT00000012926 Uniprot:F1MS42
Length = 342
Score = 136 (52.9 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 50/164 (30%), Positives = 74/164 (45%)
Query: 110 WTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAALNNLES-YEF 166
W +T E +R F Q G V + L M R+RG FVT D+A +S +E
Sbjct: 9 WQTTQEGLREYFGQFGEVKEC-LVMRDPLTKRSRGFGFVTF--MDQAGVDKVLAQSRHEL 65
Query: 167 EGRTLKVNYAKIKKKNPFPP-VQPKPFA-TFNLFIANLSFEARAKDLREFFISEGWDVVS 224
+ +T I K FP QPK T +F+ LS +D++++F G V
Sbjct: 66 DSKT-------IDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFG-KVDD 117
Query: 225 AEVIFHDNPRRSAGYGFVSFKSK----KVAETAISAFQGKVIMC 264
A ++F R G+GFV+F+S+ KV E K++ C
Sbjct: 118 AMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVEC 161
>UNIPROTKB|D6R9P3 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964686 ProteinModelPortal:D6R9P3
SMR:D6R9P3 Ensembl:ENST00000515193 ArrayExpress:D6R9P3 Bgee:D6R9P3
Uniprot:D6R9P3
Length = 280
Score = 134 (52.2 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 45/193 (23%), Positives = 82/193 (42%)
Query: 74 ATTQDPFVDSSSAAA--VNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIE 131
AT P + + A +N + EE+ K + + W ++ +D++ F + G V+D
Sbjct: 43 ATAAPPSGNQNGAEGDQINASKNEEDAGK--MFVGGLSWDTSKKDLKDYFTKFGEVVDCT 100
Query: 132 LSMH-SKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPK 190
+ M + R+RG F+ L+ E + +GR + A KK+P +
Sbjct: 101 IKMDPNTGRSRGFGFILFKDAASVEKVLDQKE-HRLDGRVIDPKKAMAMKKDPVKKI--- 156
Query: 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKS---- 246
F+ L+ EA + +RE+F E ++ + E+ + G+ F++FK
Sbjct: 157 -------FVGGLNPEATEEKIREYF-GEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPV 208
Query: 247 KKVAETAISAFQG 259
KKV E G
Sbjct: 209 KKVLEKKFHTVSG 221
>ASPGD|ASPL0000063757 [details] [associations]
symbol:AN10941 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:BN001304 ProteinModelPortal:C8VBB9
EnsemblFungi:CADANIAT00000536 HOGENOM:HOG000162494 OMA:MNPAMMQ
Uniprot:C8VBB9
Length = 559
Score = 139 (54.0 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 38/147 (25%), Positives = 69/147 (46%)
Query: 110 WTSTHEDIRALFEQHGTVLDIELSMHSKN-RNRGLAFVTMGSPDEATAALNNLESYEFEG 168
W +T + ++ F Q G V + + S R+RG F+T P + ++ + +G
Sbjct: 119 WETTDQSLKEYFSQFGEVQECTVMRDSATGRSRGFGFLTFKDPKTVNTVM--VKEHYLDG 176
Query: 169 RTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVI 228
+ I K P + + T +F+ +S EA +D ++FF+ G V+ A ++
Sbjct: 177 KI-------IDPKRAIPRDEQEK--TSKIFVGGVSQEATEQDFKQFFMQFG-RVIDATLM 226
Query: 229 FHDNPRRSAGYGFVSFKSKKVAETAIS 255
+ R G+GFV+F S+ E A+S
Sbjct: 227 IDKDTGRPRGFGFVTFDSEAAVEAALS 253
>UNIPROTKB|D6RD18 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00966854 ProteinModelPortal:D6RD18
SMR:D6RD18 Ensembl:ENST00000514633 ArrayExpress:D6RD18 Bgee:D6RD18
Uniprot:D6RD18
Length = 283
Score = 134 (52.2 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 45/193 (23%), Positives = 82/193 (42%)
Query: 74 ATTQDPFVDSSSAAA--VNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIE 131
AT P + + A +N + EE+ K + + W ++ +D++ F + G V+D
Sbjct: 43 ATAAPPSGNQNGAEGDQINASKNEEDAGK--MFVGGLSWDTSKKDLKDYFTKFGEVVDCT 100
Query: 132 LSMH-SKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPK 190
+ M + R+RG F+ L+ E + +GR + A KK+P +
Sbjct: 101 IKMDPNTGRSRGFGFILFKDAASVEKVLDQKE-HRLDGRVIDPKKAMAMKKDPVKKI--- 156
Query: 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKS---- 246
F+ L+ EA + +RE+F E ++ + E+ + G+ F++FK
Sbjct: 157 -------FVGGLNPEATEEKIREYF-GEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPV 208
Query: 247 KKVAETAISAFQG 259
KKV E G
Sbjct: 209 KKVLEKKFHTVSG 221
>UNIPROTKB|K7EQ02 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:2683 EMBL:AC005329 EMBL:AC027307
Ensembl:ENST00000592453 Uniprot:K7EQ02
Length = 225
Score = 131 (51.2 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 38/156 (24%), Positives = 74/156 (47%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
+L + W++T E +R+ F Q+G V+D + + + N++RG FV P+ L +
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGW 220
+ +GR K + K N +F+ + +LRE+F G
Sbjct: 71 -RPHTLDGRNQKGPRSDNSKSN-------------KIFVGGIPHNCGETELREYFKKFG- 115
Query: 221 DVVSAEVIFHD-NPRRSAGYGFVSFKSKKVAETAIS 255
VV+ V+ +D +R G+GF++F+ ++ + A++
Sbjct: 116 -VVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN 150
>UNIPROTKB|G4N7J4 [details] [associations]
symbol:MGG_06400 "Nuclear and cytoplasmic polyadenylated
RNA-binding protein pub1" species:242507 "Magnaporthe oryzae 70-15"
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001234
KO:K13201 RefSeq:XP_003717170.1 ProteinModelPortal:G4N7J4
EnsemblFungi:MGG_06400T0 GeneID:2684555 KEGG:mgr:MGG_06400
Uniprot:G4N7J4
Length = 479
Score = 138 (53.6 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 53/216 (24%), Positives = 87/216 (40%)
Query: 47 PLSSSPFHA--YTFPITPKKVSPFVFHFSATTQDPFVDSSSAAAVNTEQREEEYSKTRLV 104
P++ P H T PI SP Q + S T + E +K L
Sbjct: 36 PMAPPPLHIPQNTNPIPTAITSPM----GGGDQSALM---SPGGTFTRRTAPEPNKRALY 88
Query: 105 AQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESY 164
+ T + +R +FE G V ++++ + FV P A A+ L
Sbjct: 89 VGGLDARVTEDVLRQIFETTGHVQNVKIIPDKNAKGYNYGFVEYDDPGAADRAMQTLNGR 148
Query: 165 EFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVS 224
++VN+A + + F++F+ +LS E + L + F G V
Sbjct: 149 RVHQSEIRVNWAYQAATSA---TKEDTSNHFHIFVGDLSNEVNDEVLTQAFSVFG-SVSE 204
Query: 225 AEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
A V++ RS GYGFV+F+ + AE A+S+ G+
Sbjct: 205 ARVMWDMKTGRSRGYGFVAFRDRSDAEKALSSMDGE 240
>UNIPROTKB|Q96B58 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein, isoform CRA_d" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CH471053
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
HSSP:P11940 EMBL:AC016700 UniGene:Hs.413123 HGNC:HGNC:11802
ChiTaRS:TIA1 EMBL:BC015944 IPI:IPI00743479 SMR:Q96B58 STRING:Q96B58
Ensembl:ENST00000416149 UCSC:uc002sgm.3 Uniprot:Q96B58
Length = 214
Score = 130 (50.8 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 52/172 (30%), Positives = 76/172 (44%)
Query: 95 EEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEA 154
E+E KT V N+ T I LF Q G + ++ M + N FV A
Sbjct: 2 EDEMPKTLYVG-NLSRDVTEALILQLFSQIGPCKNCKMIMDTAG-NDPYCFVEFHEHRHA 59
Query: 155 TAALNNLESYEFEGRTLKVNYAKI----KKKNPFPPVQPKPFAT--FNLFIANLSFEARA 208
AAL + + G+ +KVN+A KK V + F++F+ +LS E
Sbjct: 60 AAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITT 119
Query: 209 KDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
+D++ F G + A V+ +S GYGFVSF +K AE AI G+
Sbjct: 120 EDIKAAFAPFG-RISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQ 170
>UNIPROTKB|E9PTS0 [details] [associations]
symbol:Hnrnpab "Protein Hnrnpab" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR012956 Pfam:PF08143 EMBL:AC105470 IPI:IPI00951862
Ensembl:ENSRNOT00000065584 ArrayExpress:E9PTS0 Uniprot:E9PTS0
Length = 331
Score = 135 (52.6 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 45/192 (23%), Positives = 82/192 (42%)
Query: 75 TTQDPFVDSSSAAA--VNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIEL 132
TT P + + A +N + EE+ K + + W ++ +D++ F + G V+D +
Sbjct: 48 TTAAPSGNQNGAEGDQINASKNEEDAGK--MFVGGLSWDTSKKDLKDYFTKFGEVVDCTI 105
Query: 133 SMH-SKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKP 191
M + R+RG F+ L+ E + +GR + A KK+P +
Sbjct: 106 KMDPNTGRSRGFGFILFKDSSSVEKVLDQKE-HRLDGRVIDPKKAMAMKKDPVKKI---- 160
Query: 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKS----K 247
F+ L+ EA + +RE+F G ++ + E+ + G+ F++FK K
Sbjct: 161 ------FVGGLNPEATEEKIREYFGQFG-EIEAIELPIDPKLNKRRGFVFITFKEEDPVK 213
Query: 248 KVAETAISAFQG 259
KV E G
Sbjct: 214 KVLEKKFHTVSG 225
>UNIPROTKB|Q9QX81 [details] [associations]
symbol:Hnrnpab "RCG34663, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001837 "epithelial to mesenchymal transition" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0043565
"sequence-specific DNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 GO:GO:0001837
EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 OMA:FILFKDP OrthoDB:EOG42BX9K EMBL:AC105470 PIR:PC4375
PIR:PC4376 PIR:PC4377 UniGene:Rn.1427 UniGene:Rn.217734
GeneID:100910156 KEGG:rno:100910156 EMBL:AJ238854 IPI:IPI00212724
RefSeq:XP_003750865.1 SMR:Q9QX81 STRING:Q9QX81
Ensembl:ENSRNOT00000004885 InParanoid:Q9QX81 Genevestigator:Q9QX81
Uniprot:Q9QX81
Length = 332
Score = 135 (52.6 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 45/192 (23%), Positives = 82/192 (42%)
Query: 75 TTQDPFVDSSSAAA--VNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIEL 132
TT P + + A +N + EE+ K + + W ++ +D++ F + G V+D +
Sbjct: 49 TTAAPSGNQNGAEGDQINASKNEEDAGK--MFVGGLSWDTSKKDLKDYFTKFGEVVDCTI 106
Query: 133 SMH-SKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKP 191
M + R+RG F+ L+ E + +GR + A KK+P +
Sbjct: 107 KMDPNTGRSRGFGFILFKDSSSVEKVLDQKE-HRLDGRVIDPKKAMAMKKDPVKKI---- 161
Query: 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKS----K 247
F+ L+ EA + +RE+F G ++ + E+ + G+ F++FK K
Sbjct: 162 ------FVGGLNPEATEEKIREYFGQFG-EIEAIELPIDPKLNKRRGFVFITFKEEDPVK 214
Query: 248 KVAETAISAFQG 259
KV E G
Sbjct: 215 KVLEKKFHTVSG 226
>UNIPROTKB|Q4VXU2 [details] [associations]
symbol:PABPC1L "Polyadenylate-binding protein 1-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 EMBL:AL008725
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 HOGENOM:HOG000217922 OrthoDB:EOG4K6G3V
HSSP:P11940 EMBL:AL109839 IPI:IPI00556259 RefSeq:NP_001118228.1
UniGene:Hs.641481 ProteinModelPortal:Q4VXU2 SMR:Q4VXU2
IntAct:Q4VXU2 STRING:Q4VXU2 PhosphoSite:Q4VXU2 DMDM:74754038
PaxDb:Q4VXU2 PRIDE:Q4VXU2 Ensembl:ENST00000217073
Ensembl:ENST00000255136 GeneID:80336 KEGG:hsa:80336 UCSC:uc010ggv.1
GeneCards:GC20P043538 HGNC:HGNC:15797 neXtProt:NX_Q4VXU2
PharmGKB:PA162398552 InParanoid:Q4VXU2 OMA:MNFEMLK ChiTaRS:PABPC1L
GenomeRNAi:80336 NextBio:70904 ArrayExpress:Q4VXU2 Bgee:Q4VXU2
CleanEx:HS_PABPC1L Genevestigator:Q4VXU2 Uniprot:Q4VXU2
Length = 614
Score = 139 (54.0 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 42/171 (24%), Positives = 80/171 (46%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N+P + ++ LF Q G +L +++ + +R FV +EA A+ +
Sbjct: 191 TNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVH 250
Query: 161 LESYEFEGRTLKVNYA--KIKKKNP----FPPVQP---KPFATFNLFIANLSFEARAKDL 211
+ E GR L A +++++N F ++ + + NL++ NL L
Sbjct: 251 MNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKL 310
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
R+ F G + SA+V+ S G+GFV F S + A A++ G+++
Sbjct: 311 RKEFSPYGV-ITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 115 (45.5 bits), Expect = 0.00078, P = 0.00078
Identities = 32/142 (22%), Positives = 68/142 (47%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L +++ ++ +RG FV + + A A+N + R + V + K ++
Sbjct: 119 FSTFGNILSCKVAC-DEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRR 177
Query: 181 KNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYG 240
+ + + N+++ NL + + L++ F G ++S +V+ DN S +G
Sbjct: 178 ERE-AELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFG-KMLSVKVM-RDNSGHSRCFG 234
Query: 241 FVSFKSKKVAETAISAFQGKVI 262
FV+F+ + A+ A+ GK +
Sbjct: 235 FVNFEKHEEAQKAVVHMNGKEV 256
>UNIPROTKB|Q9H361 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
Length = 631
Score = 139 (54.0 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 42/167 (25%), Positives = 81/167 (48%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF + G L +++ +++G FV+ ++A A++ + E G+ + V
Sbjct: 205 ERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVG 264
Query: 175 YA--KIKK----KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A K+++ K F ++ + NL++ NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFG-TITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIALS 270
+V+ RS G+GFV F S + A A++ G+++ L +AL+
Sbjct: 324 KVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
>FB|FBgn0025790 [details] [associations]
symbol:TBPH "TAR DNA-binding protein-43 homolog" species:7227
"Drosophila melanogaster" [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0048812 "neuron projection
morphogenesis" evidence=IMP] [GO:0008344 "adult locomotory
behavior" evidence=IMP] [GO:0007528 "neuromuscular junction
development" evidence=IMP] [GO:0007417 "central nervous system
development" evidence=IMP] [GO:0045886 "negative regulation of
synaptic growth at neuromuscular junction" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0007528 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0008344 GO:GO:0045886 EMBL:AB010261
HSSP:Q61474 eggNOG:NOG145464 EMBL:AB019705 EMBL:AB019706 SMR:O97468
IntAct:O97468 STRING:O97468 UCSC:CG10327-RC FlyBase:FBgn0025790
InParanoid:O97468 OrthoDB:EOG4QNKC2 Uniprot:O97468
Length = 531
Score = 138 (53.6 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 45/172 (26%), Positives = 78/172 (45%)
Query: 82 DSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKN-RN 140
D+ + T++ E T L+ +PW +T E +R FE +G VL ++ +K+ ++
Sbjct: 88 DNLENSTAKTKRIETRLRCTDLIVLGLPWKTTEESLREYFETYGEVLMAQIKKDTKSGQS 147
Query: 141 RGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIA 200
+G FV GS D L N + +GR +V K P + +F+
Sbjct: 148 KGFGFVRFGSYDAQMRVLTN--RHLIDGRWCEVKVPNSKGMGHQVPCK--------VFVG 197
Query: 201 NLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAET 252
+ + + DLRE+F G +V +F P R+ + FV+F VA++
Sbjct: 198 RCTEDINSDDLREYFSKFG-EVTD---VFIPRPFRA--FSFVTFLDPDVAQS 243
>DICTYBASE|DDB_G0270634 [details] [associations]
symbol:DDB_G0270634 "putative splicing regulator"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0270634 EMBL:AAFI02000005 GO:GO:0045335
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
RefSeq:XP_646268.1 ProteinModelPortal:Q55D63
EnsemblProtists:DDB0233675 GeneID:8617224 KEGG:ddi:DDB_G0270634
InParanoid:Q55D63 OMA:CAFITFS ProtClustDB:CLSZ2497105
Uniprot:Q55D63
Length = 368
Score = 120 (47.3 bits), Expect = 9.7e-05, P = 9.7e-05
Identities = 43/177 (24%), Positives = 84/177 (47%)
Query: 92 EQREEEYSKT---RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVT 147
+Q+++++++ + ++P + E + +F + G +LDI + + N ++G AF+T
Sbjct: 6 QQQQQQFNQLGGFTVFVGHIPSSMNEEGVSQIFNKFGNILDITIIKDKRTNVSKGCAFIT 65
Query: 148 MGSPDEATAALNNL-ESYEF-EG--RTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLS 203
+ +EA ALN ES F E + L+V Y+ N ++ K LFI L
Sbjct: 66 FSTKEEADNALNTTNESGTFLENMNKPLQVKYSD----NEIEKMERK------LFIGMLG 115
Query: 204 FEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
+ +R F + G ++ I + + GYGF+ + ++ +E A+ GK
Sbjct: 116 -TSDEDQIRILFGNYG--IIEDLNIVREKDGKPKGYGFIKYSTRDESENALREIDGK 169
Score = 96 (38.9 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 24/75 (32%), Positives = 42/75 (56%)
Query: 188 QPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSK 247
Q +P + +LFI L F ++L++ F G +V+S++V N ++S +GFVS+ +
Sbjct: 280 QQQPNESNDLFIYYLPFTYGDEELKQLFAPYG-NVISSKVFIDKNTQQSKCFGFVSYDNT 338
Query: 248 KVAETAISAFQGKVI 262
+ A AI G+ I
Sbjct: 339 QSAIAAIQELNGRAI 353
Score = 82 (33.9 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 26/97 (26%), Positives = 43/97 (44%)
Query: 111 TSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLES-YEFEGR 169
TS + IR LF +G + D+ + + +G F+ + DE+ AL ++ + G
Sbjct: 116 TSDEDQIRILFGNYGIIEDLNIVREKDGKPKGYGFIKYSTRDESENALREIDGKHTLPGS 175
Query: 170 TLK--VNYA---KIKKKNPFPPVQPKPFATFNLFIAN 201
L V +A + K+K QP P FN + N
Sbjct: 176 NLPIIVKFADTERQKRKKLLGNQQP-PQNPFNFYQQN 211
>WB|WBGene00011279 [details] [associations]
symbol:asd-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000013767 KO:K14946 HSSP:P33240 EMBL:Z36238
EMBL:DQ485531 PIR:T24255 RefSeq:NP_497841.1 UniGene:Cel.17456
SMR:G5EEW7 IntAct:G5EEW7 EnsemblMetazoa:R74.5a GeneID:175542
KEGG:cel:CELE_R74.5 CTD:175542 WormBase:R74.5a OMA:QRRFAPY
NextBio:888594 Uniprot:G5EEW7
Length = 404
Score = 136 (52.9 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 36/121 (29%), Positives = 61/121 (50%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNL 161
RL N+P+ D+ A+FE+ G V+D+E+ + + ++G FVTM +PD+A A
Sbjct: 101 RLHVSNIPFKYREPDLTAMFEKVGPVVDVEIIFNERG-SKGFGFVTMQNPDDADRARAEF 159
Query: 162 ESYEFEGRTLKVNYA--KI--KKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
EGR ++VN A ++ KK P V + N I+ RA L++ ++
Sbjct: 160 NGTTIEGRRVEVNLATQRVHNKKAKPLMSVGVDAMSAQNALISQQQQIQRAALLQQQLLA 219
Query: 218 E 218
+
Sbjct: 220 Q 220
>UNIPROTKB|G5EEW7 [details] [associations]
symbol:asd-1 "RNA-binding protein ASD-1" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00390000013767 KO:K14946 HSSP:P33240
EMBL:Z36238 EMBL:DQ485531 PIR:T24255 RefSeq:NP_497841.1
UniGene:Cel.17456 SMR:G5EEW7 IntAct:G5EEW7 EnsemblMetazoa:R74.5a
GeneID:175542 KEGG:cel:CELE_R74.5 CTD:175542 WormBase:R74.5a
OMA:QRRFAPY NextBio:888594 Uniprot:G5EEW7
Length = 404
Score = 136 (52.9 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 36/121 (29%), Positives = 61/121 (50%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNL 161
RL N+P+ D+ A+FE+ G V+D+E+ + + ++G FVTM +PD+A A
Sbjct: 101 RLHVSNIPFKYREPDLTAMFEKVGPVVDVEIIFNERG-SKGFGFVTMQNPDDADRARAEF 159
Query: 162 ESYEFEGRTLKVNYA--KI--KKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
EGR ++VN A ++ KK P V + N I+ RA L++ ++
Sbjct: 160 NGTTIEGRRVEVNLATQRVHNKKAKPLMSVGVDAMSAQNALISQQQQIQRAALLQQQLLA 219
Query: 218 E 218
+
Sbjct: 220 Q 220
>UNIPROTKB|H0YHU8 [details] [associations]
symbol:SART3 "Squamous cell carcinoma antigen recognized by
T-cells 3" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC008119 HGNC:HGNC:16860 ChiTaRS:SART3
EMBL:AC010206 Ensembl:ENST00000547397 Bgee:H0YHU8 Uniprot:H0YHU8
Length = 144
Score = 115 (45.5 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 28/105 (26%), Positives = 50/105 (47%)
Query: 79 PFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKN 138
P VD S + K +L +P++ T E++ + + HGTV D+ L +
Sbjct: 18 PCVDKSKNPDFKVFRYSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAG 77
Query: 139 RNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNP 183
+ +GLA+V + +A+ A+ ++ G T+K N K+ NP
Sbjct: 78 KPKGLAYVEYENESQASQAVMKMD-----GMTIKENIIKVAISNP 117
>UNIPROTKB|Q83CD7 [details] [associations]
symbol:CBU_1183 "Glycine-rich RNA-binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 115 (45.5 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 22/85 (25%), Positives = 50/85 (58%)
Query: 94 REEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKN-RNRGLAFVTMGSPD 152
R+ S+ ++ ++ + T +++++ F Q+G + + +L M + R++G AF+T G+ D
Sbjct: 11 RKMTMSQNKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQD 70
Query: 153 EATAALNNLESYEFEGRTLKVNYAK 177
A A++ + +GR ++VN A+
Sbjct: 71 AAQEAVSKANGIDLQGRKIRVNIAR 95
>TIGR_CMR|CBU_1183 [details] [associations]
symbol:CBU_1183 "nucleic acid binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 115 (45.5 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 22/85 (25%), Positives = 50/85 (58%)
Query: 94 REEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKN-RNRGLAFVTMGSPD 152
R+ S+ ++ ++ + T +++++ F Q+G + + +L M + R++G AF+T G+ D
Sbjct: 11 RKMTMSQNKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQD 70
Query: 153 EATAALNNLESYEFEGRTLKVNYAK 177
A A++ + +GR ++VN A+
Sbjct: 71 AAQEAVSKANGIDLQGRKIRVNIAR 95
>UNIPROTKB|F1SNK9 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AEMK01195641
EMBL:CU407236 Ensembl:ENSSSCT00000005656 Uniprot:F1SNK9
Length = 400
Score = 116 (45.9 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 37/143 (25%), Positives = 65/143 (45%)
Query: 119 ALFEQHGTVLDIELSMHSKN-RNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177
+LFE+ LD E+ + K ++ G FV P +A A+N L + +T+KV+YA+
Sbjct: 98 SLFEKWRP-LDSEVIVLGKGWQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 156
Query: 178 IKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSA 237
+ NL+++ L K+L + F G ++++ ++ S
Sbjct: 157 PSSAS---------IRDANLYVSGLPKTMTQKELEQLFSQYG-RIITSRILVDQVTGISR 206
Query: 238 GYGFVSFKSKKVAETAISAFQGK 260
G GF+ F + AE AI G+
Sbjct: 207 GVGFIRFDKRIEAEEAIKGLNGQ 229
Score = 60 (26.2 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 14/51 (27%), Positives = 32/51 (62%)
Query: 81 VDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIE 131
++++ ++ V++ E+ SKT L+ +P T E++++LF G++ +IE
Sbjct: 31 INNNCSSPVDSGNTED--SKTNLIVNYLPQNMTQEELKSLF---GSIGEIE 76
>MGI|MGI:107376 [details] [associations]
symbol:Msi1 "musashi RNA-binding protein 1" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005844 "polysome" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009725
"response to hormone stimulus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107376 GO:GO:0005634 GO:GO:0005737 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0009725 GO:GO:0005844
GO:GO:0030855 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 CTD:4440 OMA:GLPGSHP OrthoDB:EOG48GW3J
EMBL:D49654 EMBL:AK084019 IPI:IPI00121300 IPI:IPI00462260
RefSeq:NP_032655.1 UniGene:Mm.5077 PDB:1UAW PDB:2MSS PDB:2MST
PDB:2RS2 PDBsum:1UAW PDBsum:2MSS PDBsum:2MST PDBsum:2RS2
ProteinModelPortal:Q61474 SMR:Q61474 STRING:Q61474
PhosphoSite:Q61474 PaxDb:Q61474 PRIDE:Q61474 DNASU:17690
Ensembl:ENSMUST00000150779 GeneID:17690 KEGG:mmu:17690
UCSC:uc008zdu.1 UCSC:uc008zdv.1 InParanoid:Q61474 ChiTaRS:MSI1
EvolutionaryTrace:Q61474 NextBio:292270 Bgee:Q61474 CleanEx:MM_MSI1
Genevestigator:Q61474 GermOnline:ENSMUSG00000054256 Uniprot:Q61474
Length = 362
Score = 135 (52.6 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 50/179 (27%), Positives = 78/179 (43%)
Query: 95 EEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPD 152
+ + ++ + W +T E +R F Q G V + L M R+RG FVT D
Sbjct: 14 DSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKEC-LVMRDPLTKRSRGFGFVTF--MD 70
Query: 153 EATAALNNLES-YEFEGRTLKVNYAKIKKKNPFPP-VQPKPFA-TFNLFIANLSFEARAK 209
+A +S +E + +T I K FP QPK T +F+ LS +
Sbjct: 71 QAGVDKVLAQSRHELDSKT-------IDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVE 123
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSK----KVAETAISAFQGKVIMC 264
D++ +F G V A ++F R G+GFV+F+S+ KV E K++ C
Sbjct: 124 DVKHYFEQFG-KVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVEC 181
>RGD|628778 [details] [associations]
symbol:Msi1 "musashi RNA-binding protein 1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=NAS] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0005844 "polysome"
evidence=IEA;ISO] [GO:0008266 "poly(U) RNA binding"
evidence=IEA;ISO] [GO:0009725 "response to hormone stimulus"
evidence=IMP] [GO:0030855 "epithelial cell differentiation"
evidence=IEP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
Genevestigator:Q8K3P4 Uniprot:Q8K3P4
Length = 362
Score = 135 (52.6 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 50/179 (27%), Positives = 78/179 (43%)
Query: 95 EEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPD 152
+ + ++ + W +T E +R F Q G V + L M R+RG FVT D
Sbjct: 14 DSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKEC-LVMRDPLTKRSRGFGFVTF--MD 70
Query: 153 EATAALNNLES-YEFEGRTLKVNYAKIKKKNPFPP-VQPKPFA-TFNLFIANLSFEARAK 209
+A +S +E + +T I K FP QPK T +F+ LS +
Sbjct: 71 QAGVDKVLAQSRHELDSKT-------IDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVE 123
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSK----KVAETAISAFQGKVIMC 264
D++ +F G V A ++F R G+GFV+F+S+ KV E K++ C
Sbjct: 124 DVKHYFEQFG-KVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVEC 181
>UNIPROTKB|Q8K3P4 [details] [associations]
symbol:Msi1 "RNA-binding protein Musashi homolog 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
Genevestigator:Q8K3P4 Uniprot:Q8K3P4
Length = 362
Score = 135 (52.6 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 50/179 (27%), Positives = 78/179 (43%)
Query: 95 EEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPD 152
+ + ++ + W +T E +R F Q G V + L M R+RG FVT D
Sbjct: 14 DSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKEC-LVMRDPLTKRSRGFGFVTF--MD 70
Query: 153 EATAALNNLES-YEFEGRTLKVNYAKIKKKNPFPP-VQPKPFA-TFNLFIANLSFEARAK 209
+A +S +E + +T I K FP QPK T +F+ LS +
Sbjct: 71 QAGVDKVLAQSRHELDSKT-------IDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVE 123
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSK----KVAETAISAFQGKVIMC 264
D++ +F G V A ++F R G+GFV+F+S+ KV E K++ C
Sbjct: 124 DVKHYFEQFG-KVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVEC 181
>UNIPROTKB|F8VR27 [details] [associations]
symbol:RBFOX1 "RNA-binding protein fox-1 homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005774 EMBL:AC006075 EMBL:AC006112 EMBL:AC007012
EMBL:AC007217 EMBL:AC007222 EMBL:AC007223 EMBL:AC009135
EMBL:AC022206 EMBL:AC023829 EMBL:AC027683 EMBL:AC079410
EMBL:AC125796 EMBL:AC131390 HGNC:HGNC:18222 ChiTaRS:RBFOX1
IPI:IPI01023064 ProteinModelPortal:F8VR27 SMR:F8VR27
Ensembl:ENST00000547605 UCSC:uc002cyr.1 ArrayExpress:F8VR27
Bgee:F8VR27 Uniprot:F8VR27
Length = 262
Score = 132 (51.5 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 35/129 (27%), Positives = 55/129 (42%)
Query: 61 TPKKVSPFVFHFSATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRAL 120
+P S +ATT D +E E + RL N+P+ D+R +
Sbjct: 76 SPADTSAQTVSGTATTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQM 135
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F Q G +LD+E+ + + ++G FVT + +A A L EGR ++VN A +
Sbjct: 136 FGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARV 194
Query: 181 KNPFPPVQP 189
V P
Sbjct: 195 MTNKKTVNP 203
>UNIPROTKB|D6RBZ0 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964992 ProteinModelPortal:D6RBZ0
SMR:D6RBZ0 Ensembl:ENST00000506339 ArrayExpress:D6RBZ0 Bgee:D6RBZ0
Uniprot:D6RBZ0
Length = 327
Score = 134 (52.2 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 45/193 (23%), Positives = 82/193 (42%)
Query: 74 ATTQDPFVDSSSAAA--VNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIE 131
AT P + + A +N + EE+ K + + W ++ +D++ F + G V+D
Sbjct: 43 ATAAPPSGNQNGAEGDQINASKNEEDAGK--MFVGGLSWDTSKKDLKDYFTKFGEVVDCT 100
Query: 132 LSMH-SKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPK 190
+ M + R+RG F+ L+ E + +GR + A KK+P +
Sbjct: 101 IKMDPNTGRSRGFGFILFKDAASVEKVLDQKE-HRLDGRVIDPKKAMAMKKDPVKKI--- 156
Query: 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKS---- 246
F+ L+ EA + +RE+F E ++ + E+ + G+ F++FK
Sbjct: 157 -------FVGGLNPEATEEKIREYF-GEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPV 208
Query: 247 KKVAETAISAFQG 259
KKV E G
Sbjct: 209 KKVLEKKFHTVSG 221
>UNIPROTKB|Q800W4 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0042036 "negative regulation of cytokine biosynthetic process"
evidence=IEA] [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
HSSP:P11940 GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:TSAPWMG
UniGene:Gga.12064 UniGene:Gga.8269 EMBL:AADN02059907
EMBL:AADN02059908 EMBL:AADN02059909 EMBL:AY189903 IPI:IPI00577572
RefSeq:NP_001244132.1 SMR:Q800W4 STRING:Q800W4
Ensembl:ENSGALT00000022506 GeneID:771327 KEGG:gga:771327
InParanoid:Q800W4 NextBio:20921528 Uniprot:Q800W4
Length = 372
Score = 135 (52.6 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 51/167 (30%), Positives = 76/167 (45%)
Query: 95 EEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEA 154
E+E KT V N+ T I LF Q G + ++ M + N FV A
Sbjct: 2 EDEMPKTLYVG-NLSRDVTEALILQLFSQIGPCKNCKMIMDTAG-NDPYCFVEFYEHRHA 59
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFAT-FNLFIANLSFEARAKDLRE 213
+AL + + G+ +KVN+A P Q K + F++F+ +LS E +D++
Sbjct: 60 ASALAAMNGRKIMGKEVKVNWATT------PSSQKKDTSNHFHVFVGDLSPEITTEDIKA 113
Query: 214 FFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
F G + A V+ +S GYGFVSF +K AE AI G+
Sbjct: 114 AFAPFG-RISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQ 159
>TAIR|locus:2040625 [details] [associations]
symbol:PAB7 "poly(A) binding protein 7" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC006282 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 IPI:IPI00535861 PIR:B84783 RefSeq:NP_181204.1
UniGene:At.37531 UniGene:At.50119 ProteinModelPortal:Q9ZQA8
SMR:Q9ZQA8 PaxDb:Q9ZQA8 PRIDE:Q9ZQA8 EnsemblPlants:AT2G36660.1
GeneID:818238 KEGG:ath:AT2G36660 TAIR:At2g36660 InParanoid:Q9ZQA8
OMA:RSLCYGY PhylomeDB:Q9ZQA8 ProtClustDB:CLSN2913328
Genevestigator:Q9ZQA8 GermOnline:AT2G36660 Uniprot:Q9ZQA8
Length = 609
Score = 138 (53.6 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 42/176 (23%), Positives = 82/176 (46%)
Query: 95 EEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEA 154
EE+Y T L +N+ + + +R F + G ++ + ++ RG AFV +P++A
Sbjct: 197 EEKY--TNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDA 254
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKK------KNPFPPV--QPKPFATF-NLFIANLSFE 205
A + +F + L V A+ K + F + K A N+++ N++
Sbjct: 255 RRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVA 314
Query: 206 ARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKV 261
++LR+ F G +++ + D +S G+GFV F + + A A+ F G++
Sbjct: 315 VTEEELRKHFSQCG--TITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGQM 368
Score = 133 (51.9 bits), Expect = 7.1e-06, P = 7.1e-06
Identities = 43/154 (27%), Positives = 73/154 (47%)
Query: 106 QNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYE 165
+N+P + T+ ++ +F++ G ++ +++ ++RG FV D A AA+ L S
Sbjct: 117 KNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTI 176
Query: 166 FEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSA 225
+ + V K KK V+P+ T NL++ NL + LRE F G +VS
Sbjct: 177 VADKEIYVG--KFMKKTD--RVKPEEKYT-NLYMKNLDADVSEDLLREKFAEFG-KIVSL 230
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ +N R GY FV+F + + A A G
Sbjct: 231 AIAKDEN-RLCRGYAFVNFDNPEDARRAAETVNG 263
Score = 114 (45.2 bits), Expect = 0.00099, P = 0.00099
Identities = 28/96 (29%), Positives = 49/96 (51%)
Query: 92 EQREEEYSKTRLVAQ-------NVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLA 144
EQ +E++ + +++A+ NV T E++R F Q GT+ +L K +++G
Sbjct: 288 EQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFG 347
Query: 145 FVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
FV +P+EA A+ F G+ L V A+ K+
Sbjct: 348 FVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKKE 383
>ZFIN|ZDB-GENE-030131-3238 [details] [associations]
symbol:pabpc1a "poly A binding protein,
cytoplasmic 1 a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0007507 "heart development" evidence=IMP] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-3238 GO:GO:0007507
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 OrthoDB:EOG40ZQX5
EMBL:BC099992 IPI:IPI00485280 RefSeq:NP_001026846.1
UniGene:Dr.24504 ProteinModelPortal:Q499B6 SMR:Q499B6 STRING:Q499B6
GeneID:606498 KEGG:dre:606498 CTD:606498 InParanoid:Q499B6
NextBio:20892436 ArrayExpress:Q499B6 Uniprot:Q499B6
Length = 634
Score = 138 (53.6 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 46/188 (24%), Positives = 87/188 (46%)
Query: 94 REEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDE 153
R +E+ T + +N E ++ +F ++G L I + +++G FV+ ++
Sbjct: 186 RAKEF--TNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDDSGKSKGFGFVSFERHED 243
Query: 154 ATAALNNLESYEFEGRTLKVNYAKIKK------KNPFPPVQPKPFATF---NLFIANLSF 204
A A++ + E G+ + V A+ K K F ++ + NL++ NL
Sbjct: 244 AQRAVDEMNGKEMNGKQVYVGRAQKKGERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDD 303
Query: 205 EARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC 264
+ LR+ F G + SA+V+ RS G+GFV F S + A A++ G+++
Sbjct: 304 GLDDERLRKEFSPFG-TITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 265 --LVIALS 270
L +AL+
Sbjct: 361 KPLYVALA 368
Score = 125 (49.1 bits), Expect = 6.1e-05, P = 6.1e-05
Identities = 39/143 (27%), Positives = 69/143 (48%)
Query: 121 FEQHGTVLDIELSMHSKNRNR-GLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179
F G +L I + R G A+V P +A AL+ + +GR +++ +++
Sbjct: 31 FSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAERALDTMNFDVIKGRPVRIMWSQ-- 88
Query: 180 KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
++P + N+FI NL K L + F + G +++S +V+ +N S GY
Sbjct: 89 -RDP----SLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCKVVCDENG--SKGY 140
Query: 240 GFVSFKSKKVAETAISAFQGKVI 262
GFV F++ + AE AI G ++
Sbjct: 141 GFVHFETHEAAERAIEKMNGMLL 163
>TAIR|locus:2058573 [details] [associations]
symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
Length = 662
Score = 138 (53.6 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 43/183 (23%), Positives = 80/183 (43%)
Query: 92 EQREEEYSK---TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTM 148
E+RE K T + +N+ +T ++++ F Q+G++ + ++R FV
Sbjct: 213 EERESAADKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNF 272
Query: 149 GSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQP---------KPFATFNLFI 199
+P++A A+ L +F+ + V A+ K + + F NL++
Sbjct: 273 ENPEDAARAVEALNGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYV 332
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
NL + LRE F G + S +V+ D S G GFV+F + A ++ G
Sbjct: 333 KNLDDTVTDEKLRELFAEFG-TITSCKVM-RDPSGTSKGSGFVAFSAASEASRVLNEMNG 390
Query: 260 KVI 262
K++
Sbjct: 391 KMV 393
Score = 123 (48.4 bits), Expect = 0.00011, P = 0.00011
Identities = 39/159 (24%), Positives = 73/159 (45%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLE 162
L +N+ + ++ + F GT++ +++ ++RG FV + D A A+ L
Sbjct: 136 LFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLN 195
Query: 163 SYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKD-LREFFISEGWD 221
+ + V ++K+ F N+++ NLS EA D L+ F G
Sbjct: 196 GKVLNDKQIFVG-PFLRKEERESAADKMKFT--NVYVKNLS-EATTDDELKTTFGQYG-- 249
Query: 222 VVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
+S+ V+ D +S +GFV+F++ + A A+ A GK
Sbjct: 250 SISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALNGK 288
Score = 121 (47.7 bits), Expect = 0.00018, P = 0.00018
Identities = 36/125 (28%), Positives = 56/125 (44%)
Query: 138 NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNL 197
N + G +V + D+A A+ L G+ +++ Y+ + NL
Sbjct: 84 NTSLGYGYVNYSNTDDAEKAMQKLNYSYLNGKMIRITYSSRDSS-------ARRSGVGNL 136
Query: 198 FIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAF 257
F+ NL K L E F G +VS +V D+ +S GYGFV F ++ A+ AI
Sbjct: 137 FVKNLDKSVDNKTLHEAFSGCG-TIVSCKVAT-DHMGQSRGYGFVQFDTEDSAKNAIEKL 194
Query: 258 QGKVI 262
GKV+
Sbjct: 195 NGKVL 199
>ASPGD|ASPL0000040642 [details] [associations]
symbol:AN2989 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
GO:GO:0003676 HOGENOM:HOG000276232 OMA:ISEMDGK
ProteinModelPortal:C8VIY5 EnsemblFungi:CADANIAT00010091
Uniprot:C8VIY5
Length = 128
Score = 114 (45.2 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 24/76 (31%), Positives = 43/76 (56%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
+L + W +T + +R F ++GT+ + + + NR+RG FV S EA AA+
Sbjct: 3 KLFIGGLAWHTTDDVLREGFSRYGTIEEAVVVKDRDTNRSRGFGFVRFASEPEADAAMGA 62
Query: 161 LESYEFEGRTLKVNYA 176
+ + EF+GR ++V+ A
Sbjct: 63 MNNQEFDGRIIRVDKA 78
>UNIPROTKB|H7BY49 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 Ensembl:ENST00000361692 Uniprot:H7BY49
Length = 152
Score = 114 (45.2 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 41/135 (30%), Positives = 63/135 (46%)
Query: 117 IRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176
I LF Q G + ++ M + N FV A AAL + + G+ +KVN+A
Sbjct: 15 ILQLFSQIGPCKNCKMIMDTAG-NDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWA 73
Query: 177 KIKKKNPFPPVQPKPFAT-FNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRR 235
P Q K + F++F+ +LS E +D++ F G + A V+ +
Sbjct: 74 TT------PSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFG-RISDARVVKDMATGK 126
Query: 236 SAGYGFVSFKSKKVA 250
S GYGFVSF +K V+
Sbjct: 127 SKGYGFVSFFNKWVS 141
>ZFIN|ZDB-GENE-070212-1 [details] [associations]
symbol:dazap1 "DAZ associated protein 1" species:7955
"Danio rerio" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-070212-1 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:HNLDGRN GeneTree:ENSGT00700000104255
EMBL:BX255969 EMBL:BX323045 IPI:IPI00961610
Ensembl:ENSDART00000104362 Bgee:F1QBG2 Uniprot:F1QBG2
Length = 407
Score = 135 (52.6 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 40/177 (22%), Positives = 85/177 (48%)
Query: 89 VNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVT 147
+N+ +E K L + W++T E +R F Q+G V+D + + S N++RG FV
Sbjct: 1 MNSNLAGDEIGK--LFVGGLDWSTTQETLRNYFSQYGEVVDCVIMKDKSTNQSRGFGFVK 58
Query: 148 MGSPDEATAALNNLESYEFEGRTLK--------VNYAKIKKKNPFPPVQPKPFATFNLFI 199
P+ L+ + + +GR + + K + K+ + + + +F+
Sbjct: 59 FKDPNCVRTVLDT-KPHNLDGRNIDPKPCTPRGMQPEKTRTKDGWKGSKSDSNKSKKIFV 117
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHD-NPRRSAGYGFVSFKSKKVAETAIS 255
+ +LR++F G VV+ V+ +D +R G+GF++F++++ + A++
Sbjct: 118 GGIPHNCGEAELRDYFNRFG--VVTEVVMIYDAEKQRPRGFGFITFEAEQSVDQAVN 172
>WB|WBGene00003903 [details] [associations]
symbol:pab-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000003
GO:GO:0003723 eggNOG:COG0724 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
GeneTree:ENSGT00640000091232 EMBL:Z50110 PIR:T21095
RefSeq:NP_510260.1 ProteinModelPortal:Q19579 SMR:Q19579
STRING:Q19579 PaxDb:Q19579 PRIDE:Q19579 EnsemblMetazoa:F18H3.3a.1
EnsemblMetazoa:F18H3.3a.2 EnsemblMetazoa:F18H3.3a.3
EnsemblMetazoa:F18H3.3a.4 GeneID:181473 KEGG:cel:CELE_F18H3.3
UCSC:F18H3.3a.3 CTD:181473 WormBase:F18H3.3a InParanoid:Q19579
OMA:YEESNIG NextBio:914090 ArrayExpress:Q19579 Uniprot:Q19579
Length = 692
Score = 138 (53.6 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 46/192 (23%), Positives = 85/192 (44%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
E E T + +N E + A+F + G + + ++ + +G FV
Sbjct: 229 ELGESGLKYTNVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQ 288
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKKNP--------FPPVQPKPFATF---NLFIA 200
D A A+ L EG K++ + +KK+ + ++ + + NL++
Sbjct: 289 DAAGQAVEKLNDSILEGTDCKLSVCRAQKKSERSAELKRKYEALKQERVQRYQGVNLYVK 348
Query: 201 NLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
N+ + LR+ F S G + SA+V+ +N R S G+GFV F+ + A A++ K
Sbjct: 349 NIEEDLNDDGLRDHFSSFG-TITSAKVMVDENGR-SKGFGFVCFEKPEEATAAVTDMNSK 406
Query: 261 VIMC--LVIALS 270
+I L +AL+
Sbjct: 407 MIGAKPLYVALA 418
Score = 123 (48.4 bits), Expect = 0.00011, P = 0.00011
Identities = 43/155 (27%), Positives = 76/155 (49%)
Query: 114 HEDIRA--LFEQH---GTVLDIELSMHSKNR-NRGLAFVTMGSPDEATAALNNLESYEFE 167
H D+ LFE+ G VL I + + +R + G A+V P +A AL+ +
Sbjct: 65 HPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDTMNFEVIH 124
Query: 168 GRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEV 227
GR +++ +++ ++P + N+FI NL K + + F G +++S +V
Sbjct: 125 GRPMRIMWSQ---RDP----AARRAGNGNIFIKNLDRVIDNKSVYDTFSLFG-NILSCKV 176
Query: 228 IFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
D+ S GYGFV F+++ A+TAI G ++
Sbjct: 177 AT-DDEGNSKGYGFVHFETEHSAQTAIEKVNGMLL 210
>POMBASE|SPBC4F6.14 [details] [associations]
symbol:SPBC4F6.14 "RNA-binding protein (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISS;IDA] [GO:0006364
"rRNA processing" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPBC4F6.14 GO:GO:0005730 GO:GO:0000166 EMBL:CU329671
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724
HSSP:P52298 HOGENOM:HOG000187841 KO:K14573 OrthoDB:EOG4K6KCP
PIR:T40511 RefSeq:NP_596114.1 ProteinModelPortal:O74400
STRING:O74400 EnsemblFungi:SPBC4F6.14.1 GeneID:2540871
KEGG:spo:SPBC4F6.14 OMA:MHALECL NextBio:20801987 Uniprot:O74400
Length = 674
Score = 117 (46.2 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 30/100 (30%), Positives = 51/100 (51%)
Query: 81 VDSSSAAAVNTEQREEEYSKTRLVAQNVPWT-STHEDIRALFEQHGTVLDIELSMHSKNR 139
VD+ AV R++ ++ RL+ +N+PW+ + + F + G V +I++ R
Sbjct: 89 VDTDQNKAVKKTIRQD--NRPRLIIRNLPWSIKKPQHLEPHFSKFGKVREIKIPTKGGGR 146
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179
G AFV M A A+N+L E +GR + V++A K
Sbjct: 147 MCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDWAVSK 186
Score = 116 (45.9 bits), Expect = 0.00068, P = 0.00068
Identities = 43/181 (23%), Positives = 78/181 (43%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSPDEATAA 157
S + L +N+ + + +D+ F G + + ++ NRG FVT ++A A
Sbjct: 3 SNSTLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRA 62
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA-TFN------LFIANLSFEARAKD 210
L++ + GR L++++A +K++ Q K T L I NL + +
Sbjct: 63 AKELKNKKLHGRILRLDFATPRKRSEVDTDQNKAVKKTIRQDNRPRLIIRNLPWSIKKPQ 122
Query: 211 LREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALS 270
E S+ V ++ R G+ FV K +K AE A+++ G I IA+
Sbjct: 123 HLEPHFSKFGKVREIKIPTKGGGRM-CGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVD 181
Query: 271 Y 271
+
Sbjct: 182 W 182
Score = 64 (27.6 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAI 254
+F+ NL FE ++L F G + A+++ RS G GF+ F+ +K + +
Sbjct: 279 VFVRNLLFECTEQELYNHFRQFG-PLAYAKLVKDPATDRSLGRGFIKFRYEKDCQNCL 335
Score = 52 (23.4 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 235 RSAGYGFVSFKSKKVAETAISAFQGKVI 262
RS G+GF+ F S K A A+ G+ I
Sbjct: 537 RSKGFGFMQFISHKYALMALRWLNGREI 564
>UNIPROTKB|E2RK48 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14411
GeneTree:ENSGT00700000104255 CTD:4440 EMBL:AAEX03014735
RefSeq:XP_854252.2 Ensembl:ENSCAFT00000016345 GeneID:611488
KEGG:cfa:611488 Uniprot:E2RK48
Length = 362
Score = 134 (52.2 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 50/180 (27%), Positives = 81/180 (45%)
Query: 95 EEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPD 152
+ + ++ + W +T E +R F Q G V + L M R+RG FVT D
Sbjct: 14 DSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKEC-LVMRDPLTKRSRGFGFVTF--MD 70
Query: 153 EATAALNNLES-YEFEGRTLKVNYAKIKKKNPFPP-VQPKPFA-TFNLFIANLSFEARAK 209
+A +S +E + +T I K FP QPK T +F+ LS +
Sbjct: 71 QAGVDKVLAQSRHELDSKT-------IDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVE 123
Query: 210 DLREFFISEGWDVVS-AEVIFHDNPRRSAGYGFVSFKSK----KVAETAISAFQGKVIMC 264
D++++F E ++ V A ++F R G+GFV+F+S+ KV E K++ C
Sbjct: 124 DVKQYF--EQFEKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVEC 181
>UNIPROTKB|H0Y8G5 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000509263 Bgee:H0Y8G5 Uniprot:H0Y8G5
Length = 261
Score = 131 (51.2 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 38/171 (22%), Positives = 79/171 (46%)
Query: 79 PFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-K 137
P V S+++ ++E + + ++ + W +T +D++ F + G V+D L +
Sbjct: 8 PVVGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPIT 67
Query: 138 NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNL 197
R+RG FV + ++ E ++ G+ + AK K PV+ +
Sbjct: 68 GRSRGFGFVLFKESESVDKVMDQKE-HKLNGKVIDPKRAKAMKTKE--PVK-------KI 117
Query: 198 FIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKK 248
F+ LS + + +RE+F G +V S E+ + + G+ F++FK ++
Sbjct: 118 FVGGLSPDTPEEKIREYFGGFG-EVESIELPMDNKTNKRRGFCFITFKEEE 167
>UNIPROTKB|F1M3H8 [details] [associations]
symbol:F1M3H8 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0032496 GO:GO:0006954
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 IPI:IPI00777708
ProteinModelPortal:F1M3H8 PRIDE:F1M3H8 Ensembl:ENSRNOT00000061231
Uniprot:F1M3H8
Length = 194
Score = 126 (49.4 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 40/143 (27%), Positives = 67/143 (46%)
Query: 112 STHEDIRALFEQHGTVLDIELSMHSKN-RNRGLAFVTMGSPDEATAALNNLESYEFEGRT 170
++ +R FE GT+ D + ++ + R+R FVT + +EA AA+ + +G T
Sbjct: 18 TSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMA-ASPHAVDGNT 76
Query: 171 LKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFH 230
+++ A ++ + P K LF+ L + DL E F G V AE+I
Sbjct: 77 VELKRAVSREDSARPGAHAK---VKKLFVGGLKGDVAEGDLIEHFSQFG-AVEKAEIIAD 132
Query: 231 DNPRRSAGYGFVSFKSKKVAETA 253
+ G+GFV F+S A+ A
Sbjct: 133 KQSGKKRGFGFVYFQSHDAADKA 155
>UNIPROTKB|B4DHE8 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 HOVERGEN:HBG002295 UniGene:Hs.658922
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 EMBL:AK295060 IPI:IPI00910884
SMR:B4DHE8 STRING:B4DHE8 Ensembl:ENST00000416426 UCSC:uc010wnm.1
Uniprot:B4DHE8
Length = 324
Score = 133 (51.9 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 42/162 (25%), Positives = 71/162 (43%)
Query: 110 WTSTHEDIRALFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNNLESYEFEG 168
W ++ + +R F + G + + + + R+RG FVT P L +E +
Sbjct: 8 WQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ-PHHELDS 66
Query: 169 RTLKVNYAKIKKKNPFPP-VQPKPFA-TFNLFIANLSFEARAKDLREFFISEGWDVVSAE 226
+T I K FP QPK T +F+ LS +D++++F G V A
Sbjct: 67 KT-------IDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFG-KVEDAM 118
Query: 227 VIFHDNPRRSAGYGFVSFKSK----KVAETAISAFQGKVIMC 264
++F R G+GFV+F+++ KV E K++ C
Sbjct: 119 LMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVEC 160
>UNIPROTKB|F1PIK6 [details] [associations]
symbol:MYEF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0014902 "myotube differentiation" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005794 GO:GO:0030182 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0014902
GeneTree:ENSGT00410000025635 EMBL:AAEX03016110
Ensembl:ENSCAFT00000022267 Uniprot:F1PIK6
Length = 611
Score = 137 (53.3 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 46/166 (27%), Positives = 76/166 (45%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALF-EQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAA 157
++ R+ N+P+ + I+ L E+ G V +EL ++ ++RG V + A
Sbjct: 35 NRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKA 94
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFN-LFIANLSFEARAKDLREFFI 216
L + Y+ GR L + +N +Q + +F+ANL F+ K L+E F
Sbjct: 95 LETMNKYDLSGRPLNIKEDP-DGENARRALQRTAGRLGSTIFVANLDFKVGWKKLKEVFS 153
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
G V A+ I D +S G G V+F+ A AIS F G+ +
Sbjct: 154 IAG-TVKRAD-IKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFL 197
>RGD|69255 [details] [associations]
symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
species:10116 "Rattus norvegicus" [GO:0001837 "epithelial to
mesenchymal transition" evidence=ISO] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0003688 "DNA replication origin binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0045892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003688 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 PIR:PC4375 PIR:PC4376 PIR:PC4377 UniGene:Rn.1427
UniGene:Rn.217734 EMBL:AF108653 IPI:IPI00208193
ProteinModelPortal:Q9Z0U8 SMR:Q9Z0U8 IntAct:Q9Z0U8 MINT:MINT-7138483
STRING:Q9Z0U8 PRIDE:Q9Z0U8 UCSC:RGD:69255 Genevestigator:Q9Z0U8
Uniprot:Q9Z0U8
Length = 298
Score = 132 (51.5 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 41/176 (23%), Positives = 76/176 (43%)
Query: 89 VNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH-SKNRNRGLAFVT 147
+N + EE+ K + + W ++ +D++ F + G V+D + M + R+RG F+
Sbjct: 78 INASKNEEDAGK--MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFIL 135
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEAR 207
L+ E + +GR + A KK+P + F+ L+ EA
Sbjct: 136 FKDSSSVEKVLDQKE-HRLDGRVIDPKKAMAMKKDPVKKI----------FVGGLNPEAT 184
Query: 208 AKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKS----KKVAETAISAFQG 259
+ +RE+F G ++ + E+ + G+ F++FK KKV E G
Sbjct: 185 EEKIREYFGQFG-EIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSG 239
>ZFIN|ZDB-GENE-030131-618 [details] [associations]
symbol:hnrnpa0l "heterogeneous nuclear
ribonucleoprotein A0, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-618
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104255 HOGENOM:HOG000234442 EMBL:BX088707
EMBL:BC050513 IPI:IPI00489762 UniGene:Dr.75590 UniGene:Dr.79301
SMR:Q7ZU48 STRING:Q7ZU48 Ensembl:ENSDART00000052511
InParanoid:Q7ZU48 OMA:ICRRIAP Uniprot:Q7ZU48
Length = 302
Score = 132 (51.5 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 39/144 (27%), Positives = 70/144 (48%)
Query: 112 STHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYEFEGRT 170
+T E +RA FEQ+G + D + M+ R+R FVT S +EA AA++ + +G
Sbjct: 17 TTDEGLRAHFEQYGQLTDCVVVMNQPLQRSRCFGFVTYSSTEEADAAMS-ARPHIVDGNN 75
Query: 171 LKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFH 230
+ + A ++ P + K +F+ L + + L+++F G + A+VI
Sbjct: 76 VDLKRAVAREDAGKPEMLAK---VKKIFVGGLKDDIEDEHLQDYFSQFG-PIEKAQVITD 131
Query: 231 DNPRRSAGYGFVSFKSKKVAETAI 254
+ + G+GFV F A+ A+
Sbjct: 132 KDTGKKRGFGFVYFDDNDSADKAV 155
>UNIPROTKB|B4DTC3 [details] [associations]
symbol:HNRNPD "cDNA FLJ54150, highly similar to
Heterogeneous nuclear ribonucleoprotein D0" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 HOGENOM:HOG000234441 HOVERGEN:HBG002295 EMBL:AC124016
UniGene:Hs.480073 HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956
Pfam:PF08143 EMBL:AK300149 IPI:IPI01014602 SMR:B4DTC3 STRING:B4DTC3
Ensembl:ENST00000543098 Uniprot:B4DTC3
Length = 303
Score = 132 (51.5 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 39/166 (23%), Positives = 76/166 (45%)
Query: 84 SSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRG 142
S A ++ + EE+ K + + W +T +D++ F + G V+D L + R+RG
Sbjct: 30 SEGAKIDASKNEEDEGK--MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRG 87
Query: 143 LAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANL 202
FV + ++ E ++ G+ + AK K PV+ +F+ L
Sbjct: 88 FGFVLFKESESVDKVMDQKE-HKLNGKVIDPKRAKAMKTKE--PVK-------KIFVGGL 137
Query: 203 SFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKK 248
S + + +RE+F G +V S E+ + + G+ F++FK ++
Sbjct: 138 SPDTPEEKIREYFGGFG-EVESIELPMDNKTNKRRGFCFITFKEEE 182
>UNIPROTKB|E2RND1 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:AAEX03013964 Ensembl:ENSCAFT00000015215 Uniprot:E2RND1
Length = 644
Score = 137 (53.3 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 42/171 (24%), Positives = 79/171 (46%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N+ + ++ LF + G +L +++ +RG FV +EA A+ +
Sbjct: 191 TNIYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRDDSGHSRGFGFVNFQKHEEAQKAVMD 250
Query: 161 LESYEFEGRTLKVNYA--KIKK----KNPFPPVQPKPFATF---NLFIANLSFEARAKDL 211
+ E GR L V A ++++ K F ++ + NL++ NL + L
Sbjct: 251 MNGKEVSGRLLYVGRAQKRVERQSELKRRFEQLKQDRLTRYQGVNLYVKNLDDSIDDEKL 310
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
R+ F G + SA+V+ S G+GFV F S + A A++ G+++
Sbjct: 311 RKEFSPYGV-ITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMNGRIL 358
Score = 117 (46.2 bits), Expect = 0.00049, P = 0.00049
Identities = 35/143 (24%), Positives = 72/143 (50%)
Query: 121 FEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179
F G +L I + + R+ G A++ P +A AL+ + +G+ +++ +++
Sbjct: 31 FSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMNFEVIKGQPIRIMWSQ-- 88
Query: 180 KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
++P + N+FI NL K L + F + G +++S +V+ D+ R G+
Sbjct: 89 -RDP----GLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG-NILSCKVVCDDHGSR--GF 140
Query: 240 GFVSFKSKKVAETAISAFQGKVI 262
GFV F++ + A+ AI+ G ++
Sbjct: 141 GFVHFETHEAAQQAITTMNGMLL 163
>WB|WBGene00001368 [details] [associations]
symbol:exc-7 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0002064 "epithelial cell development"
evidence=IMP] [GO:0035150 "regulation of tube size" evidence=IMP]
[GO:0016607 "nuclear speck" evidence=IDA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0002064 eggNOG:COG0724 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 HSSP:P26378 GeneTree:ENSGT00560000077064
OMA:DIGESKT GO:GO:0035150 EMBL:Z36752 PIR:T21822 RefSeq:NP_496057.1
ProteinModelPortal:Q20084 SMR:Q20084 DIP:DIP-27011N IntAct:Q20084
MINT:MINT-1038844 STRING:Q20084 PaxDb:Q20084 EnsemblMetazoa:F35H8.5
GeneID:174506 KEGG:cel:CELE_F35H8.5 CTD:174506 WormBase:F35H8.5
InParanoid:Q20084 NextBio:884320 Uniprot:Q20084
Length = 456
Score = 135 (52.6 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 41/164 (25%), Positives = 74/164 (45%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T E++R+LF G + +L ++ G FV ++A A
Sbjct: 40 SKTNLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDALRA 99
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+++ + +T+KV+YA+ N Q K NL+++ + +L F
Sbjct: 100 VSSFNGLRLQNKTIKVSYAR--PSND----QIKGS---NLYVSGIPKSMTLHELESIFRP 150
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKV 261
G ++++ ++ + S G GFV F K A+ AI G +
Sbjct: 151 FG-QIITSRILSDNVTGLSKGVGFVRFDKKDEADVAIKTLNGSI 193
>POMBASE|SPBC660.15 [details] [associations]
symbol:SPBC660.15 "mRNA cleavage factor complex subunit
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR binding"
evidence=NAS] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005849 "mRNA cleavage factor
complex" evidence=ISO] [GO:0006378 "mRNA polyadenylation"
evidence=ISO] [GO:0006379 "mRNA cleavage" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC660.15 GO:GO:0005737 GO:GO:0000166
EMBL:CU329671 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003730
eggNOG:COG0724 GO:GO:0006379 GO:GO:0005849 KO:K14411 HSSP:Q14103
OrthoDB:EOG4TF3VC PIR:T40627 RefSeq:NP_595094.1
ProteinModelPortal:O94432 SMR:O94432 STRING:O94432
EnsemblFungi:SPBC660.15.1 GeneID:2541150 KEGG:spo:SPBC660.15
OMA:CHKANDG NextBio:20802263 Uniprot:O94432
Length = 474
Score = 135 (52.6 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 45/184 (24%), Positives = 81/184 (44%)
Query: 73 SATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIEL 132
SA T ++S+ A T E K + N W +T + +R FEQ G VLD +
Sbjct: 137 SALTGSGAMESNEDNAEETSPFNREDGKMFIGGLN--WETTDDSLRDYFEQFGEVLDCTV 194
Query: 133 SMHSKN-RNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKP 191
S R+RG F+T +P ++ + + +G+ I K P + +
Sbjct: 195 MRDSTTGRSRGFGFLTFKNPKCVNEVMS--KEHHLDGKI-------IDPKRAIPREEQEK 245
Query: 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAE 251
T +F+ + + ++ R FF G V+ A ++ + R G+GFV+++++ E
Sbjct: 246 --TAKMFVGGVPGDCTEEEFRNFFNQFG-RVLDATLMMDKDTGRPRGFGFVTYENESAVE 302
Query: 252 TAIS 255
+S
Sbjct: 303 ATMS 306
>UNIPROTKB|H0YAR2 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519100
Uniprot:H0YAR2
Length = 284
Score = 131 (51.2 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 47/192 (24%), Positives = 88/192 (45%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDI--RALFEQHGTVLDIELSMHSKNRNRGLAFVTMG 149
++RE E NV + ED+ L + G L +++ +++G FV+
Sbjct: 49 KEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGPALSVKVMTDESGKSKGFGFVSFE 108
Query: 150 SPDEATAALNNLESYEFEGRTLKVNYA--KIKK----KNPFPPVQPKPFATF---NLFIA 200
++A A++ + E G+ + V A K+++ K F ++ + NL++
Sbjct: 109 RHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVK 168
Query: 201 NLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
NL + LR+ F G + SA+V+ RS G+GFV F S + A A++ G+
Sbjct: 169 NLDDGIDDERLRKEFSPFG-TITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGR 225
Query: 261 VIMC--LVIALS 270
++ L +AL+
Sbjct: 226 IVATKPLYVALA 237
>UNIPROTKB|Q9TTV2 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9490 "Saguinus oedipus" [GO:0030529
"ribonucleoprotein complex" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
GO:GO:0030529 HOVERGEN:HBG002295 HSSP:P22626 EMBL:AF192348
ProteinModelPortal:Q9TTV2 SMR:Q9TTV2 Uniprot:Q9TTV2
Length = 341
Score = 132 (51.5 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 38/153 (24%), Positives = 72/153 (47%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSP 151
+RE+E + +L + + +T E +R +EQ G + D + + + R+RG FVT S
Sbjct: 2 EREKEQFR-KLFIGGLSFQTTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSM 60
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDL 211
E AA+ + +GR ++ A ++++ P LF+ + + L
Sbjct: 61 AEVDAAMA-ARPHSIDGRVVEPKRAVAREESGKPGAH---VTVKKLFVGGIKEDTEEHHL 116
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSF 244
R++F G + + E+I + G+GFV+F
Sbjct: 117 RDYFAEYG-KIDTIEIITDRQSGKKRGFGFVTF 148
>UNIPROTKB|Q9XSY6 [details] [associations]
symbol:Q9XSY6 "HnRNP A/B related protein" species:9685
"Felis catus" [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0043565 "sequence-specific DNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0001837 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 EMBL:AF153444 ProteinModelPortal:Q9XSY6 Uniprot:Q9XSY6
Length = 279
Score = 130 (50.8 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 40/176 (22%), Positives = 76/176 (43%)
Query: 89 VNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVT 147
+N + EE+ K + + W ++ +D++ F + G V+D + M + R++G F+
Sbjct: 54 INASKNEEDAGK--MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMVPNTGRSKGFGFIL 111
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEAR 207
L+ E + +GR + A KK+P + F+ L+ EA
Sbjct: 112 FKDAASVEKVLDQKE-HRLDGRVIDPKKAMAMKKDPVKKI----------FVGGLNPEAT 160
Query: 208 AKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKS----KKVAETAISAFQG 259
+ +RE+F E ++ + E+ + G+ F++FK KKV E G
Sbjct: 161 EEKIREYF-GEFGEIEAIELPMDPKTNKRRGFVFITFKEEEPVKKVLEKKFHTISG 215
>ZFIN|ZDB-GENE-040426-1546 [details] [associations]
symbol:zgc:66127 "zgc:66127" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1546 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104376 EMBL:CABZ01055593
EMBL:CABZ01000532 EMBL:CABZ01000533 EMBL:CABZ01000534
EMBL:CABZ01000536 EMBL:CABZ01000539 EMBL:CABZ01000540
EMBL:CABZ01085064 EMBL:CABZ01085065 EMBL:CABZ01085066
EMBL:CABZ01085067 EMBL:CABZ01085068 EMBL:CABZ01088246
EMBL:CABZ01088247 EMBL:CABZ01088248 EMBL:CABZ01088249
EMBL:CABZ01088250 EMBL:CABZ01088251 EMBL:CABZ01092715
EMBL:CABZ01092716 EMBL:CABZ01092717 EMBL:CABZ01092718
IPI:IPI00971841 Ensembl:ENSDART00000082448 Bgee:E7FAB3
Uniprot:E7FAB3
Length = 411
Score = 133 (51.9 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 44/167 (26%), Positives = 78/167 (46%)
Query: 83 SSSAAAVNTEQ---REEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKN- 138
S A++ EQ RE E + +L + + +T E +RA FEQ GT+ D + M N
Sbjct: 18 SHRVTAMSKEQQTPREPEQLR-KLFIGGLSFETTDESLRAHFEQWGTLTDCVV-MRDPNT 75
Query: 139 -RNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNL 197
R+RG FVT S E AA++ ++ +GR ++ A ++ + P +
Sbjct: 76 KRSRGFGFVTYSSVGEVDAAMD-ARPHKVDGRAVEPKRAVSREDSSKPGAHS---TVKKM 131
Query: 198 FIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSF 244
F+ + + + LRE+F G + ++ N + G+ F++F
Sbjct: 132 FVGGIKEDTDEEHLREYFGQFG-KIDEVNIMTEKNSDKRRGFAFITF 177
>UNIPROTKB|B0QYY4 [details] [associations]
symbol:RBFOX2 "RNA-binding protein fox-1 homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0043484
"regulation of RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017325 Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043484 EMBL:Z95114 EMBL:AL049748 HOVERGEN:HBG000044
InterPro:IPR025670 Pfam:PF12414 EMBL:AL079295 UniGene:Hs.282998
HGNC:HGNC:9906 ChiTaRS:RBFOX2 HOGENOM:HOG000230971 EMBL:Z82217
IPI:IPI01025028 SMR:B0QYY4 STRING:B0QYY4 Ensembl:ENST00000359369
UCSC:uc010gwu.3 Uniprot:B0QYY4
Length = 370
Score = 132 (51.5 bits), Expect = 4.1e-06, P = 4.1e-06
Identities = 33/112 (29%), Positives = 55/112 (49%)
Query: 66 SPFVFHFSATTQDPF-VDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQH 124
SP + S TT+ D + ++E E + + RL N+P+ D+R +F Q
Sbjct: 55 SPSTQNGSLTTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQF 114
Query: 125 GTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176
G +LD+E+ + + ++G FVT + +A A L EGR ++VN A
Sbjct: 115 GKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 165
>UNIPROTKB|J9P300 [details] [associations]
symbol:RBFOX2 "RNA binding protein fox-1 homolog"
species:9615 "Canis lupus familiaris" [GO:0005634 "nucleus"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017325
Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484
GeneTree:ENSGT00390000013767 KO:K14946 InterPro:IPR025670
Pfam:PF12414 CTD:23543 EMBL:AAEX03007352 RefSeq:XP_862055.2
Ensembl:ENSCAFT00000049108 GeneID:481281 KEGG:cfa:481281
Uniprot:J9P300
Length = 376
Score = 132 (51.5 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 33/112 (29%), Positives = 55/112 (49%)
Query: 66 SPFVFHFSATTQDPF-VDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQH 124
SP + S TT+ D + ++E E + + RL N+P+ D+R +F Q
Sbjct: 75 SPSTQNGSLTTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQF 134
Query: 125 GTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176
G +LD+E+ + + ++G FVT + +A A L EGR ++VN A
Sbjct: 135 GKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 185
>FB|FBgn0010263 [details] [associations]
symbol:Rbp9 "RNA-binding protein 9" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0007293
"germarium-derived egg chamber formation" evidence=TAS] [GO:0005634
"nucleus" evidence=TAS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0048477
"oogenesis" evidence=IMP] [GO:0036093 "germ cell proliferation"
evidence=IMP] [GO:0060856 "establishment of blood-brain barrier"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0007293 TIGRFAMs:TIGR01661
HSSP:P26378 GO:GO:0060856 FlyBase:FBgn0010263 EMBL:S55886
ProteinModelPortal:Q26293 SMR:Q26293 STRING:Q26293 PRIDE:Q26293
InParanoid:Q26293 ArrayExpress:Q26293 Bgee:Q26293 Uniprot:Q26293
Length = 444
Score = 133 (51.9 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 46/185 (24%), Positives = 80/185 (43%)
Query: 82 DSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRN 140
++++ A N E KT L+ +P T + ++IR+LF G V +L ++
Sbjct: 91 NNNNNATANNNNNNEPDPKTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQS 150
Query: 141 RGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIA 200
G FV ++A A+N L + +T+KV+ A+ P + A NL+++
Sbjct: 151 LGYGFVNYVKQEDAEKAINALNGLRLQNKTIKVSIAR-------PSSESIKGA--NLYVS 201
Query: 201 NLSFEARAKDLREFFISEGWDVVSAEVIFHDN------PRRSAGYGFVSFKSKKVAETAI 254
L DL F G ++++ ++ DN S G GF+ F + A+ AI
Sbjct: 202 GLPKNMTQSDLESLFSPYG-KIITSRILC-DNITGEHAAGLSKGVGFIRFDQRFEADRAI 259
Query: 255 SAFQG 259
G
Sbjct: 260 KELNG 264
>ZFIN|ZDB-GENE-040923-2 [details] [associations]
symbol:rbfox1l "RNA binding protein, fox-1 homolog
(C. elegans) 1-like" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;IGI;IDA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA;IGI;IDA;IMP] [GO:0048739 "cardiac muscle fiber
development" evidence=IGI] [GO:0048741 "skeletal muscle fiber
development" evidence=IGI] [GO:0008380 "RNA splicing"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017325 Pfam:PF00076
PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040923-2 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0048741
GO:GO:0043484 GO:GO:0048739 eggNOG:NOG258617
GeneTree:ENSGT00390000013767 KO:K14946 HOVERGEN:HBG000044
InterPro:IPR025670 Pfam:PF12414 HSSP:Q9NWB1 EMBL:AB074763
EMBL:BX511250 IPI:IPI00505620 RefSeq:NP_999940.1 UniGene:Dr.30455
ProteinModelPortal:Q7ZT82 SMR:Q7ZT82 STRING:Q7ZT82 PRIDE:Q7ZT82
Ensembl:ENSDART00000027364 GeneID:407613 KEGG:dre:407613 CTD:407613
InParanoid:Q7ZT82 OMA:LYRGGYN OrthoDB:EOG4CRM0S NextBio:20818492
ArrayExpress:Q7ZT82 Bgee:Q7ZT82 Uniprot:Q7ZT82
Length = 382
Score = 132 (51.5 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 34/106 (32%), Positives = 53/106 (50%)
Query: 84 SSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGL 143
S AA + E+ + RL N+P+ D+R +F Q G +LD+E+ + + ++G
Sbjct: 130 SGAAGGSDEEGGGKAQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGF 188
Query: 144 AFVTMGSPDEATAALNNLESYEFEGRTLKVNYA--KIKKKNPFPPV 187
FVT S EA A L EGR ++VN A ++ K P P+
Sbjct: 189 GFVTFESAVEADRAREKLNGTIVEGRKIEVNNATARVVTKKPQTPL 234
>UNIPROTKB|F1P8W1 [details] [associations]
symbol:RBFOX2 "RNA binding protein fox-1 homolog"
species:9615 "Canis lupus familiaris" [GO:0005634 "nucleus"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017325
Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484
GeneTree:ENSGT00390000013767 InterPro:IPR025670 Pfam:PF12414
OMA:HGEQSTN EMBL:AAEX03007352 Ensembl:ENSCAFT00000002662
Uniprot:F1P8W1
Length = 390
Score = 132 (51.5 bits), Expect = 4.6e-06, P = 4.6e-06
Identities = 33/112 (29%), Positives = 55/112 (49%)
Query: 66 SPFVFHFSATTQDPF-VDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQH 124
SP + S TT+ D + ++E E + + RL N+P+ D+R +F Q
Sbjct: 85 SPSTQNGSLTTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQF 144
Query: 125 GTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176
G +LD+E+ + + ++G FVT + +A A L EGR ++VN A
Sbjct: 145 GKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 195
>UNIPROTKB|O43251 [details] [associations]
symbol:RBFOX2 "RNA binding protein fox-1 homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010724 "regulation of
definitive erythrocyte differentiation" evidence=IEA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0008134
"transcription factor binding" evidence=IDA] [GO:0030520
"intracellular estrogen receptor signaling pathway" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0042127 "regulation of cell
proliferation" evidence=TAS] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0003714 "transcription corepressor activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017325 Pfam:PF00076
PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0003714 GO:GO:0045892 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0042127 GO:GO:0008134 GO:GO:0016070 EMBL:AL049748
GO:GO:0030520 GO:GO:0000381 GO:GO:0010724 KO:K14946
HOVERGEN:HBG000044 InterPro:IPR025670 Pfam:PF12414 eggNOG:NOG293807
EMBL:AY072786 EMBL:AF229058 EMBL:AY960684 EMBL:AL009266
EMBL:CR456559 EMBL:AK055213 EMBL:AK291460 EMBL:DQ778625
EMBL:AL079295 EMBL:BC013115 EMBL:BC025281 EMBL:AM419009
IPI:IPI00011618 IPI:IPI00179299 IPI:IPI00258168 IPI:IPI00258170
IPI:IPI00554810 IPI:IPI00843981 IPI:IPI00844525 IPI:IPI00844603
IPI:IPI00885127 IPI:IPI00937652 RefSeq:NP_001026865.1
RefSeq:NP_001076045.1 RefSeq:NP_001076046.1 RefSeq:NP_001076047.1
RefSeq:NP_001076048.1 RefSeq:NP_055124.1 UniGene:Hs.282998 PDB:2CQ3
PDBsum:2CQ3 ProteinModelPortal:O43251 SMR:O43251 IntAct:O43251
MINT:MINT-1437920 STRING:O43251 PhosphoSite:O43251 PaxDb:O43251
PRIDE:O43251 DNASU:23543 Ensembl:ENST00000262829
Ensembl:ENST00000405409 Ensembl:ENST00000414461
Ensembl:ENST00000416721 Ensembl:ENST00000438146
Ensembl:ENST00000449924 GeneID:23543 KEGG:hsa:23543 UCSC:uc003aoh.4
UCSC:uc003aoj.4 UCSC:uc003aok.4 UCSC:uc003aol.4 UCSC:uc003aom.4
UCSC:uc003aon.4 UCSC:uc003aoo.4 CTD:23543 GeneCards:GC22M036136
H-InvDB:HIX0016419 HGNC:HGNC:9906 HPA:HPA006240 MIM:612149
neXtProt:NX_O43251 PharmGKB:PA34272 InParanoid:O43251 OMA:HGEQSTN
ChiTaRS:RBFOX2 EvolutionaryTrace:O43251 GenomeRNAi:23543
NextBio:46058 ArrayExpress:O43251 Bgee:O43251 CleanEx:HS_RBM9
Genevestigator:O43251 GermOnline:ENSG00000100320 Uniprot:O43251
Length = 390
Score = 132 (51.5 bits), Expect = 4.6e-06, P = 4.6e-06
Identities = 33/112 (29%), Positives = 55/112 (49%)
Query: 66 SPFVFHFSATTQDPF-VDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQH 124
SP + S TT+ D + ++E E + + RL N+P+ D+R +F Q
Sbjct: 85 SPSTQNGSLTTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQF 144
Query: 125 GTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176
G +LD+E+ + + ++G FVT + +A A L EGR ++VN A
Sbjct: 145 GKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 195
>UNIPROTKB|F1SPT7 [details] [associations]
symbol:RBFOX2 "RNA binding protein fox-1 homolog"
species:9823 "Sus scrofa" [GO:0005634 "nucleus" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0043484 "regulation of RNA splicing" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017325 Pfam:PF00076
PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0003714 GO:GO:0045892 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030520 GO:GO:0000381 GO:GO:0010724
GeneTree:ENSGT00390000013767 InterPro:IPR025670 Pfam:PF12414
OMA:HGEQSTN EMBL:CU633647 Ensembl:ENSSSCT00000000160 Uniprot:F1SPT7
Length = 392
Score = 132 (51.5 bits), Expect = 4.6e-06, P = 4.6e-06
Identities = 33/112 (29%), Positives = 55/112 (49%)
Query: 66 SPFVFHFSATTQDPF-VDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQH 124
SP + S TT+ D + ++E E + + RL N+P+ D+R +F Q
Sbjct: 91 SPSTQNGSLTTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQF 150
Query: 125 GTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176
G +LD+E+ + + ++G FVT + +A A L EGR ++VN A
Sbjct: 151 GKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 201
>UNIPROTKB|A6QPR6 [details] [associations]
symbol:RBFOX2 "RNA binding protein fox-1 homolog 2"
species:9913 "Bos taurus" [GO:0008134 "transcription factor
binding" evidence=ISS] [GO:0003714 "transcription corepressor
activity" evidence=ISS] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS] [GO:0030520
"intracellular estrogen receptor signaling pathway" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0043484 "regulation of RNA splicing" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017325 Pfam:PF00076
PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0003714 GO:GO:0045892 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043484 GO:GO:0008134 GO:GO:0030520 HOVERGEN:HBG000044
InterPro:IPR025670 Pfam:PF12414 OrthoDB:EOG4NVZKS EMBL:BC149447
EMBL:BT026301 IPI:IPI00685735 IPI:IPI00886713 UniGene:Bt.3013
ProteinModelPortal:A6QPR6 SMR:A6QPR6 eggNOG:NOG293807
InParanoid:A6QPR6 Uniprot:A6QPR6
Length = 394
Score = 132 (51.5 bits), Expect = 4.6e-06, P = 4.6e-06
Identities = 33/112 (29%), Positives = 55/112 (49%)
Query: 66 SPFVFHFSATTQDPF-VDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQH 124
SP + S TT+ D + ++E E + + RL N+P+ D+R +F Q
Sbjct: 93 SPSTQNGSLTTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQF 152
Query: 125 GTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176
G +LD+E+ + + ++G FVT + +A A L EGR ++VN A
Sbjct: 153 GKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 203
>UNIPROTKB|E1BLD4 [details] [associations]
symbol:RBM28 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005794 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00550000074976
EMBL:DAAA02011496 IPI:IPI00697406 ProteinModelPortal:E1BLD4
Ensembl:ENSBTAT00000022610 OMA:KSMNMKE Uniprot:E1BLD4
Length = 756
Score = 134 (52.2 bits), Expect = 4.7e-06, Sum P(2) = 4.7e-06
Identities = 27/82 (32%), Positives = 47/82 (57%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALN 159
K RL+ +N+ + + +D++ +F Q GT+L++ + + RG AFV + EA AL
Sbjct: 113 KARLIIRNLSFKCSEDDLKTVFSQFGTILEVNIPRKPDGKMRGFAFVQFKNLLEAGKALK 172
Query: 160 NLESYEFEGRTLKVNYAKIKKK 181
+ E +GRT+ V++A K K
Sbjct: 173 GMNMKEIKGRTVAVDWAVAKDK 194
Score = 43 (20.2 bits), Expect = 4.7e-06, Sum P(2) = 4.7e-06
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 180 KKNPFPPVQPKP 191
K P PP +PKP
Sbjct: 685 KMKPLPPKKPKP 696
>UNIPROTKB|F1M5N1 [details] [associations]
symbol:F1M5N1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00567689
ProteinModelPortal:F1M5N1 Ensembl:ENSRNOT00000023344 Uniprot:F1M5N1
Length = 207
Score = 125 (49.1 bits), Expect = 4.8e-06, P = 4.8e-06
Identities = 37/148 (25%), Positives = 70/148 (47%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKN--RNRGLAFVTMGSPDEATAALN 159
+L + + +T E +R+ FEQ GT+ D + M N R+RG FVT + +E AA+N
Sbjct: 11 KLFIGGLSFETTDESLRSHFEQWGTLTDCVV-MRDPNTKRSRGFGFVTYATVEEVDAAMN 69
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEG 219
++ +GR ++ A + + +P + +F+ + + LR++F G
Sbjct: 70 -ARPHKVDGRVVEPKRAVSIEDSQ----RPGAYLNMKIFVGAIKEDTEEHHLRDYFGQYG 124
Query: 220 WDVVSAEVIFHDNPRRSAGYGFVSFKSK 247
V E++ + G+ FV+F +
Sbjct: 125 KTEV-IEIVTDRGSGKKRGFAFVTFDDR 151
>POMBASE|SPBC23E6.01c [details] [associations]
symbol:SPBC23E6.01c "mRNA processing factor
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000932
"cytoplasmic mRNA processing body" evidence=ISO] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=ISO]
[GO:0071004 "U2-type prespliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC23E6.01c GO:GO:0005829 GO:GO:0000166
EMBL:CU329671 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000932
eggNOG:COG0724 GO:GO:0071004 OrthoDB:EOG44BFB8 GO:GO:0070935
HOGENOM:HOG000186228 RefSeq:NP_596601.2 ProteinModelPortal:O60176
STRING:O60176 EnsemblFungi:SPBC23E6.01c.1 GeneID:2540551
KEGG:spo:SPBC23E6.01c OMA:HEASSAM NextBio:20801677 Uniprot:O60176
Length = 473
Score = 133 (51.9 bits), Expect = 4.8e-06, P = 4.8e-06
Identities = 44/186 (23%), Positives = 86/186 (46%)
Query: 82 DSSSAAAVNTEQREEEYSKTRL-VAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNR 139
+S + + + + E Y KT L + + PW T I+ ++ G + ++L +
Sbjct: 74 NSENTSNYGSSRDENVYQKTTLWMGELEPWV-TEAFIQQVWNTLGKAVKVKLIRNRYTGM 132
Query: 140 NRGLAFVTMGSPDEATAALN-NLESYEFEGRTLKVNYAK---IKKKNPFPPVQPKPFATF 195
N G FV SP EA++A++ N + K+N+A +++K+ + +
Sbjct: 133 NAGYCFVEFASPHEASSAMSMNNKPIPGTNHLFKLNWASGGGLREKSI------SKASEY 186
Query: 196 NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
++F+ +LS D+ F S SA+++ S GYGFV F + ++A++
Sbjct: 187 SIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALA 246
Query: 256 AFQGKV 261
QG++
Sbjct: 247 EMQGQI 252
>UNIPROTKB|F1LM82 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1310403 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662 Pfam:PF11627
GeneTree:ENSGT00700000104376 IPI:IPI00923129
Ensembl:ENSRNOT00000015325 ArrayExpress:F1LM82 Uniprot:F1LM82
Length = 312
Score = 130 (50.8 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 38/154 (24%), Positives = 73/154 (47%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGS 150
++RE+E + +L + + +T E +R +EQ G + D + + + R+RG FVT S
Sbjct: 12 KKREKEQFR-KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSS 70
Query: 151 PDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKD 210
E AA+ + +GR ++ A ++++ P LF+ + +
Sbjct: 71 MAEVDAAMA-ARPHSIDGRVVEPKRAVAREESGKPGAH---VTVKKLFVGGIKEDTEEHH 126
Query: 211 LREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSF 244
LR++F G + + E+I + G+GFV+F
Sbjct: 127 LRDYFEEYG-KIDTIEIITDRQSGKKRGFGFVTF 159
>UNIPROTKB|G4NH06 [details] [associations]
symbol:MGG_03973 "Splicing factor 3B subunit 4"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001236 KO:K12831 RefSeq:XP_003719883.1
EnsemblFungi:MGG_03973T0 GeneID:2677428 KEGG:mgr:MGG_03973
Uniprot:G4NH06
Length = 407
Score = 132 (51.5 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 43/155 (27%), Positives = 68/155 (43%)
Query: 120 LFEQHGTVLDIELSMHSKNR-NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178
+ Q G V+++ + M +R ++G FV +P+ A A L G+ ++VN A
Sbjct: 31 MMTQMGPVVNLHMPMDRVSRTHQGYGFVEFDTPESADYAARALNGIRVFGKVIRVNKASA 90
Query: 179 KKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAG 238
K Q LF+ NL + K L + F G V V+ D S G
Sbjct: 91 DK-------QKTAEIGAELFVNNLDPQVDEKILFDTFSRFGQLVTPPNVV-RDANNISKG 142
Query: 239 YGFVSFKSKKVAETAISAFQGKVIMCLVIALSYLY 273
YGFV+F S + ++TA G+ ++ I + Y Y
Sbjct: 143 YGFVNFDSFEASDTARDTMNGQYLLSKQITVEYAY 177
WARNING: HSPs involving 405 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.132 0.390 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 274 274 0.00078 115 3 11 22 0.46 33
33 0.40 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 655
No. of states in DFA: 596 (63 KB)
Total size of DFA: 197 KB (2111 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 27.29u 0.10s 27.39t Elapsed: 00:00:01
Total cpu time: 27.33u 0.10s 27.43t Elapsed: 00:00:01
Start: Sat May 11 07:12:10 2013 End: Sat May 11 07:12:11 2013
WARNINGS ISSUED: 2