BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024018
(274 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225459201|ref|XP_002285735.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic [Vitis vinifera]
gi|302142004|emb|CBI19207.3| unnamed protein product [Vitis vinifera]
Length = 294
Score = 270 bits (691), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 147/267 (55%), Positives = 189/267 (70%), Gaps = 20/267 (7%)
Query: 1 MSLLRLYCCFPST-SYLYTEPQQQQSHEAPFVSLLQKQQKQHYNYFFPLSSSPFHAYTFP 59
M+LLR + CFPST S+L +P Q+ H L ++ PL
Sbjct: 1 MALLR-HLCFPSTTSFLTPQPLQKPLH----SILSFSSSFSPLSHALPLR---------- 45
Query: 60 ITPKKVSPFVFHFSATTQDPFVDS-SSAAAVNTEQ--REEEYSKTRLVAQNVPWTSTHED 116
T ++++ F SA TQ P S S+A V+T Q EEE+S+TRL+AQN+PWT T +D
Sbjct: 46 -TTRRINLFHVSASAQTQSPPPASPSTAVTVDTPQNDEEEEFSRTRLIAQNIPWTCTAQD 104
Query: 117 IRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176
IR+LFE++GTVLD+ELSMH+K RNRGLAF++MGSP+EA AAL+NLESYE EGR +KVNYA
Sbjct: 105 IRSLFEKYGTVLDVELSMHNKTRNRGLAFISMGSPEEALAALSNLESYELEGRAIKVNYA 164
Query: 177 KIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRS 236
+KK P P+Q KP +NLFIANL ++ARAKDLREFF S +VVSAEVIFH+NPRRS
Sbjct: 165 NPQKKKPSSPIQHKPVTPYNLFIANLPYQARAKDLREFFSSGNCNVVSAEVIFHENPRRS 224
Query: 237 AGYGFVSFKSKKVAETAISAFQGKVIM 263
+GYGFVSF SK+ A+TA+S+FQG++ M
Sbjct: 225 SGYGFVSFGSKEEADTALSSFQGQMFM 251
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 103 LVAQNVPWTSTHEDIRALFEQ-HGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
L N+P+ + +D+R F + V+ E+ H R+ G FV+ GS +EA AL++
Sbjct: 185 LFIANLPYQARAKDLREFFSSGNCNVVSAEVIFHENPRRSSGYGFVSFGSKEEADTALSS 244
Query: 161 LESYEFEGRTLKVNYAK--IKKKN 182
+ F GR L+V ++ +K++N
Sbjct: 245 FQGQMFMGRPLRVARSRRFVKREN 268
>gi|147769276|emb|CAN61580.1| hypothetical protein VITISV_008033 [Vitis vinifera]
Length = 294
Score = 270 bits (690), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 146/267 (54%), Positives = 189/267 (70%), Gaps = 20/267 (7%)
Query: 1 MSLLRLYCCFPST-SYLYTEPQQQQSHEAPFVSLLQKQQKQHYNYFFPLSSSPFHAYTFP 59
M+LLR + CFPST S+L +P Q+ H L ++ PL +
Sbjct: 1 MALLR-HLCFPSTTSFLTXQPLQKPLH----SILSFSSSFSPLSHALPLRXT-------- 47
Query: 60 ITPKKVSPFVFHFSATTQDPFVDS-SSAAAVNTEQ--REEEYSKTRLVAQNVPWTSTHED 116
++++ F SA TQ P S S+A V+T Q EEE+S+TRL+AQN+PWT T +D
Sbjct: 48 ---RRINLFHVSASAQTQSPPPASPSTAVTVDTPQNDEEEEFSRTRLIAQNIPWTCTAQD 104
Query: 117 IRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176
IR+LFE++GTVLD+ELSMH+K RNRGLAF++MGSP+EA AAL+NLESYE EGR +KVNYA
Sbjct: 105 IRSLFEKYGTVLDVELSMHNKTRNRGLAFISMGSPEEALAALSNLESYELEGRAIKVNYA 164
Query: 177 KIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRS 236
+KK P P+Q KP +NLFIANL ++ARAKDLREFF S +VVSAEVIFH+NPRRS
Sbjct: 165 NPQKKKPSSPIQHKPVTPYNLFIANLPYQARAKDLREFFSSGNCNVVSAEVIFHENPRRS 224
Query: 237 AGYGFVSFKSKKVAETAISAFQGKVIM 263
+GYGFVSF SK+ A+TA+S+FQG++ M
Sbjct: 225 SGYGFVSFGSKEEADTALSSFQGQMFM 251
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 103 LVAQNVPWTSTHEDIRALFEQ-HGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
L N+P+ + +D+R F + V+ E+ H R+ G FV+ GS +EA AL++
Sbjct: 185 LFIANLPYQARAKDLREFFSSGNCNVVSAEVIFHENPRRSSGYGFVSFGSKEEADTALSS 244
Query: 161 LESYEFEGRTLKVNYAK--IKKKN 182
+ F GR L+V ++ +K++N
Sbjct: 245 FQGQMFMGRPLRVARSRRFVKREN 268
>gi|224082053|ref|XP_002306558.1| predicted protein [Populus trichocarpa]
gi|222856007|gb|EEE93554.1| predicted protein [Populus trichocarpa]
Length = 309
Score = 265 bits (678), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 159/271 (58%), Positives = 188/271 (69%), Gaps = 13/271 (4%)
Query: 1 MSLLRLYCCFPSTSYLYTEPQQQQSHEAPFVSLLQKQQKQHYNYFFPLSSSPFHAYTFPI 60
M+ LRL CC S + P + P +S L + S H+ FPI
Sbjct: 1 MASLRLPCCLSSKT-----PSFSINPITPKLSSLHNHPNNFTFNTNTNNISLSHSLCFPI 55
Query: 61 -TPKKVSPFVFHFSATTQD-PFVDSSSAAAVNTE------QREEEYSKTRLVAQNVPWTS 112
K F+ HFS+TTQD P VDSSS V TE ++EEE+SKTRL A NVPW
Sbjct: 56 RNNNKFRHFLLHFSSTTQDHPVVDSSSLDDVVTEYQSKAEEKEEEFSKTRLFASNVPWNC 115
Query: 113 THEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
T EDIRALF++ GTV+D+ELSM+SK RNRGLAFVTMGSP+EA AALNNLESYEFEGRTLK
Sbjct: 116 TAEDIRALFQKFGTVVDVELSMYSKIRNRGLAFVTMGSPEEAVAALNNLESYEFEGRTLK 175
Query: 173 VNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDN 232
+NYAK KKK P PP PKP TFNLF+ANL FEA++KDL+EFFI+EG +VVSAE+IFHDN
Sbjct: 176 MNYAKAKKKKPSPPPPPKPGPTFNLFVANLPFEAKSKDLKEFFIAEGANVVSAEIIFHDN 235
Query: 233 PRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
PRR +GYGFV+FK+KK A+ AIS F K M
Sbjct: 236 PRRPSGYGFVAFKTKKEADYAISTFSDKEFM 266
>gi|356515764|ref|XP_003526568.1| PREDICTED: 29 kDa ribonucleoprotein A, chloroplastic-like [Glycine
max]
Length = 315
Score = 261 bits (666), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 150/271 (55%), Positives = 181/271 (66%), Gaps = 21/271 (7%)
Query: 1 MSLLRLYCCFPSTSYLYTEPQQQQSHEAPFVSLLQKQQKQHYNYFFPLSSSPFHAYTFPI 60
M+LLRL C PST+ L T+P S F L + Q N F LSS F +
Sbjct: 1 MALLRL-VCLPSTNQLSTQPHSH-SQSTSFSFLRKTPHSQPIN--FSLSSFHFPRLSLIT 56
Query: 61 TPKKVSPFVFHFSAT---TQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDI 117
T + ++ H S + T++P V EEE+S+TRL+AQNVPWTST EDI
Sbjct: 57 TKQTLNLTPTHASTSEQQTEEPLVS------------EEEFSRTRLLAQNVPWTSTPEDI 104
Query: 118 RALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177
R LFE+HG VL++ELSM+ KNRNRGLAFV MGSP+EA ALNNLESYEFEGR +KVNYA+
Sbjct: 105 RTLFEKHGKVLEVELSMYKKNRNRGLAFVEMGSPEEALEALNNLESYEFEGRVIKVNYAR 164
Query: 178 IKK-KNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRS 236
KK K PPV+PK TFNLF+ANLS+EA +KDL+EFF VVSAEV++ DNPRR
Sbjct: 165 PKKEKTAPPPVKPK-VVTFNLFVANLSYEASSKDLKEFFDLGTGRVVSAEVVYRDNPRRP 223
Query: 237 AGYGFVSFKSKKVAETAISAFQGKVIMCLVI 267
+GYGFVSFKSKK AE A++ FQGKV M I
Sbjct: 224 SGYGFVSFKSKKEAEAALAEFQGKVFMGRPI 254
>gi|255645618|gb|ACU23303.1| unknown [Glycine max]
Length = 315
Score = 260 bits (665), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 150/271 (55%), Positives = 181/271 (66%), Gaps = 21/271 (7%)
Query: 1 MSLLRLYCCFPSTSYLYTEPQQQQSHEAPFVSLLQKQQKQHYNYFFPLSSSPFHAYTFPI 60
M+LLRL C PST+ L T+P S F L + Q N F LSS F +
Sbjct: 1 MALLRL-VCLPSTNQLSTQPHSH-SQSTSFSFLRKTPHSQPIN--FSLSSFHFPRLSLIT 56
Query: 61 TPKKVSPFVFHFSAT---TQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDI 117
T + ++ H S + T++P V EEE+S+TRL+AQNVPWTST EDI
Sbjct: 57 TKQTLNLTPTHASTSEQQTEEPLVS------------EEEFSRTRLLAQNVPWTSTPEDI 104
Query: 118 RALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177
R LFE+HG VL++ELSM+ KNRNRGLAFV MGSP+EA ALNNLESYEFEGR +KVNYA+
Sbjct: 105 RTLFEKHGKVLEVELSMYKKNRNRGLAFVEMGSPEEALEALNNLESYEFEGRVIKVNYAR 164
Query: 178 IKK-KNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRS 236
KK K PPV+PK TFNLF+ANLS+EA +KDL+EFF VVSAEV++ DNPRR
Sbjct: 165 PKKEKTAPPPVKPK-VVTFNLFVANLSYEASSKDLKEFFDLGTGRVVSAEVVYRDNPRRP 223
Query: 237 AGYGFVSFKSKKVAETAISAFQGKVIMCLVI 267
+GYGFVSFKSKK AE A++ FQGKV M I
Sbjct: 224 SGYGFVSFKSKKEAEAALAEFQGKVFMGRPI 254
>gi|449436976|ref|XP_004136268.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
gi|449497014|ref|XP_004160289.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
Length = 300
Score = 255 bits (651), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 134/216 (62%), Positives = 167/216 (77%), Gaps = 9/216 (4%)
Query: 48 LSSSPFHAYTFPITPKKVSPFVFHFSATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQN 107
LS+S H+ I K+ S FVF F++T+QD AV++ EE+S+TRL+AQN
Sbjct: 54 LSTSISHSPLISIRAKRTSTFVFQFASTSQD--------EAVSSPSDTEEFSQTRLLAQN 105
Query: 108 VPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFE 167
VPW ST EDIR+LFE++GTVLD+ELSM++K RNRGLAFVTMGSP+EA AALNNLESYEFE
Sbjct: 106 VPWDSTPEDIRSLFEKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFE 165
Query: 168 GRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEV 227
GRTL++NYAK+KK+ P TFNLF+ANL F+ARAKDL+EFF S +VVSA++
Sbjct: 166 GRTLRLNYAKLKKEK-PSPPVKPKPVTFNLFVANLPFDARAKDLKEFFDSGSGNVVSAQI 224
Query: 228 IFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
IF++NPRRS+GYGFV+FK+KK AE AIS FQGK M
Sbjct: 225 IFNENPRRSSGYGFVAFKTKKDAEAAISEFQGKTFM 260
>gi|356508060|ref|XP_003522779.1| PREDICTED: 30 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 297
Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 121/173 (69%), Positives = 143/173 (82%), Gaps = 1/173 (0%)
Query: 95 EEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEA 154
EEE+S+TRL+AQNVPWTST EDIR+LFE+HG VL +ELSM+ KNRNRGLAFV MGSP+EA
Sbjct: 65 EEEFSRTRLLAQNVPWTSTPEDIRSLFEKHGKVLQVELSMYKKNRNRGLAFVEMGSPEEA 124
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
ALNNLESYEFEGR +KVNYA+ KK+ PPV+PK TFNLF+ANLS+EA AKDL+EF
Sbjct: 125 LEALNNLESYEFEGRVIKVNYARPKKEKTPPPVKPK-VVTFNLFVANLSYEASAKDLKEF 183
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVI 267
F S VVSAEV++ DNPRR +GYGFVS+KSKK AE A++ FQGK+ M I
Sbjct: 184 FDSGTGKVVSAEVVYRDNPRRPSGYGFVSYKSKKEAEAALAEFQGKIFMGRPI 236
>gi|297808953|ref|XP_002872360.1| hypothetical protein ARALYDRAFT_489706 [Arabidopsis lyrata subsp.
lyrata]
gi|297318197|gb|EFH48619.1| hypothetical protein ARALYDRAFT_489706 [Arabidopsis lyrata subsp.
lyrata]
Length = 300
Score = 247 bits (630), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 135/219 (61%), Positives = 165/219 (75%), Gaps = 4/219 (1%)
Query: 54 HAYTFPIT-PKKVSPFVFHFSATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTS 112
H TFP + P K F +FS TTQDP ++SSS++A TE EEE SKTRL+AQNVPWTS
Sbjct: 46 HYSTFPDSIPAKSRNFTTYFSTTTQDPVLESSSSSA--TEVVEEEISKTRLIAQNVPWTS 103
Query: 113 THEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
T EDIR+LFE++G V+DIE+SMH K RNRGL F+ M SPDEA AL +LES ++EGR LK
Sbjct: 104 TPEDIRSLFEKYGNVIDIEMSMHKKERNRGLVFIEMASPDEAATALKSLESCDYEGRRLK 163
Query: 173 VNYAKIKKKNPFPPVQ-PKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD 231
V+YAK KKK + P + P P TFNLF+ANL+FEARAK L+EFF ++ +VVS EVIF +
Sbjct: 164 VDYAKTKKKKTYAPREKPSPVPTFNLFVANLAFEARAKHLKEFFDADTGNVVSTEVIFQE 223
Query: 232 NPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALS 270
NPRRS+GYGFVSFK+KK AE A+ FQGK M I L+
Sbjct: 224 NPRRSSGYGFVSFKTKKQAEAALIEFQGKDFMGRPIRLA 262
>gi|51969402|dbj|BAD43393.1| putative protein [Arabidopsis thaliana]
Length = 304
Score = 238 bits (606), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 133/219 (60%), Positives = 166/219 (75%), Gaps = 3/219 (1%)
Query: 54 HAYTFPIT-PKKVSPFVFHFSATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTS 112
HA TFP + P K +FS TTQ+P +DSSS+++ E EEE SKTRL+AQNVPWTS
Sbjct: 47 HA-TFPDSIPAKSRNLTSYFSTTTQEPVLDSSSSSSSAPEVVEEEISKTRLIAQNVPWTS 105
Query: 113 THEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
T EDIR+LFE++G+V+DIE+SMH K RNRGL F+ M SP+EA AL +LES E+EGR LK
Sbjct: 106 TPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATALKSLESCEYEGRRLK 165
Query: 173 VNYAKIKKKNPFPPVQ-PKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD 231
V+YAK KKK + P + P P TFNLF+ANL+FEARAK L+EFF ++ +VVS EVIFH+
Sbjct: 166 VDYAKTKKKKTYAPRETPSPVPTFNLFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHE 225
Query: 232 NPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALS 270
NPRRS+GYGFVSFK+KK AE A+ FQGK + I L+
Sbjct: 226 NPRRSSGYGFVSFKTKKQAEAALIEFQGKDFLGRPIRLA 264
>gi|22328520|ref|NP_192643.2| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|38603886|gb|AAR24688.1| At4g09040 [Arabidopsis thaliana]
gi|51968384|dbj|BAD42884.1| putative protein [Arabidopsis thaliana]
gi|51969486|dbj|BAD43435.1| putative protein [Arabidopsis thaliana]
gi|51969588|dbj|BAD43486.1| putative protein [Arabidopsis thaliana]
gi|51970774|dbj|BAD44079.1| putative protein [Arabidopsis thaliana]
gi|62319325|dbj|BAD94588.1| hypothetical protein [Arabidopsis thaliana]
gi|332657315|gb|AEE82715.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 304
Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 132/219 (60%), Positives = 166/219 (75%), Gaps = 3/219 (1%)
Query: 54 HAYTFPIT-PKKVSPFVFHFSATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTS 112
HA TFP + P K +FS TTQ+P ++SSS+++ E EEE SKTRL+AQNVPWTS
Sbjct: 47 HA-TFPDSIPAKSRNLTSYFSTTTQEPVLESSSSSSSAPEVVEEEISKTRLIAQNVPWTS 105
Query: 113 THEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
T EDIR+LFE++G+V+DIE+SMH K RNRGL F+ M SP+EA AL +LES E+EGR LK
Sbjct: 106 TPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATALKSLESCEYEGRRLK 165
Query: 173 VNYAKIKKKNPFPPVQ-PKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD 231
V+YAK KKK + P + P P TFNLF+ANL+FEARAK L+EFF ++ +VVS EVIFH+
Sbjct: 166 VDYAKTKKKKTYAPRETPSPVPTFNLFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHE 225
Query: 232 NPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALS 270
NPRRS+GYGFVSFK+KK AE A+ FQGK + I L+
Sbjct: 226 NPRRSSGYGFVSFKTKKQAEAALIEFQGKDFLGRPIRLA 264
>gi|388510586|gb|AFK43359.1| unknown [Lotus japonicus]
Length = 305
Score = 233 bits (594), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 142/271 (52%), Positives = 177/271 (65%), Gaps = 15/271 (5%)
Query: 1 MSLLRLYCCFPSTSYLYTEPQQQQSHEAPFVSLLQKQQKQHYNYFFPLSSSPFHAYTFPI 60
M+LLR+ C TS T Q+H PF SL + K++ N P S S H ++ +
Sbjct: 1 MALLRVLCL---TSSTTTTHISTQNHSPPFSSL-EIHHKKNNNK--PYSQSSSHNHSTKL 54
Query: 61 TPKKVSPFVF--------HFSATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTS 112
T + PF F H + F S++ E EE+S TRLVAQNVPWTS
Sbjct: 55 TFCHI-PFSFRLPCLSITHSTRANTLTFASSTTQQQQTEEATTEEFSTTRLVAQNVPWTS 113
Query: 113 THEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
T ED+R+LFE++GTVL++ELSM++K R+RGLAFV M SP+EA ALN LESYEFEGR LK
Sbjct: 114 TPEDVRSLFERYGTVLEVELSMYNKTRSRGLAFVEMSSPEEALEALNKLESYEFEGRVLK 173
Query: 173 VNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDN 232
+NYA+ KKK PPV + TFNLF+ANLS+EA +KDLREFF S VVSAEV+FH++
Sbjct: 174 LNYARPKKKKAPPPVVQRKPVTFNLFVANLSYEATSKDLREFFDSGSSQVVSAEVVFHED 233
Query: 233 PRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
PR+S GYGFVSFKSKK A A+S FQ K M
Sbjct: 234 PRKSTGYGFVSFKSKKEANAALSEFQEKTFM 264
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGT-VLDIELSMHSKNR-NRGLAFVTMGSPDEATAALNN 160
L N+ + +T +D+R F+ + V+ E+ H R + G FV+ S EA AAL+
Sbjct: 198 LFVANLSYEATSKDLREFFDSGSSQVVSAEVVFHEDPRKSTGYGFVSFKSKKEANAALSE 257
Query: 161 LESYEFEGRTLKVNYAK 177
+ F GR+L+V +K
Sbjct: 258 FQEKTFMGRSLRVAPSK 274
>gi|357465131|ref|XP_003602847.1| Multiple RNA-binding domain-containing protein [Medicago
truncatula]
gi|355491895|gb|AES73098.1| Multiple RNA-binding domain-containing protein [Medicago
truncatula]
Length = 290
Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 127/230 (55%), Positives = 168/230 (73%), Gaps = 14/230 (6%)
Query: 38 QKQHY--NYFFP--LSSSPFHAYTFPITPKKVSPFVFHFSATTQDPFVDSSSAAAVNTEQ 93
+K+HY + FF L S H T IT K+ HF++T + S+S V T++
Sbjct: 31 KKKHYSPDPFFSSSLRLSVTHTPTLIITTKQ------HFNSTLR---FASTSEQQVTTQE 81
Query: 94 REEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDE 153
+ EE S TRL+AQNVPW+ST ED+R+LFE++G VL +ELSM++KNRNRGLAFV MGSP+E
Sbjct: 82 QTEELSTTRLLAQNVPWSSTTEDVRSLFEKYGKVLHVELSMYNKNRNRGLAFVEMGSPEE 141
Query: 154 ATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLRE 213
A+ ALN+L+SYEF+GR + + YAK KK+ PPV+ KP T+NLF+AN +EAR+KD++E
Sbjct: 142 ASEALNSLQSYEFDGRIINIQYAKPKKEKIPPPVERKPI-TYNLFVANFPYEARSKDVKE 200
Query: 214 FFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
FF S VVSAEVIFH+NPRR +GYGFVS+KSKK A+ A++ FQGK M
Sbjct: 201 FFDSGTGKVVSAEVIFHENPRRPSGYGFVSYKSKKEADEALAEFQGKNFM 250
>gi|255545842|ref|XP_002513981.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
gi|223547067|gb|EEF48564.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
Length = 305
Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 141/279 (50%), Positives = 187/279 (67%), Gaps = 19/279 (6%)
Query: 1 MSLLRLYCCFPSTSYLYTEPQQ--QQSHEAPFVSLLQKQQKQHYNYFFPLSSSPFHAYTF 58
M+ LRL PS YL T+ + + +PF K Q N F LS S H
Sbjct: 1 MASLRLPGS-PSAPYLSTDNLTFLKTALSSPF----HKPFNQSNNNTFSLSISHSH---- 51
Query: 59 PITPKKVSPFVFHFSAT-TQDPFVDSSSAAAVNTEQREEE----YSKTRLVAQNVPWTST 113
I P K F+ HFSA+ TQDP ++ S TE+ +E+ +S TR++A NVPW T
Sbjct: 52 -IIPFKTKHFIVHFSASATQDPILEPQSLLESKTEKEQEQEQEEFSTTRVLASNVPWNCT 110
Query: 114 HEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKV 173
EDIRALFE+ GTV+D+ELSM++K RNRGLAFV+MGSP+EA A+ +L+SYEFEGR+LK+
Sbjct: 111 TEDIRALFEKFGTVVDVELSMYNKTRNRGLAFVSMGSPEEAATAIKSLDSYEFEGRSLKM 170
Query: 174 NYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIF--HD 231
NYAK+KK+ P PP+ PKP TFNLF+ANL F+A+ DL+EFF SEG D+ SAE+++ HD
Sbjct: 171 NYAKLKKEKPLPPLPPKPVPTFNLFVANLPFDAKDNDLKEFFKSEGADIASAEIVYHNHD 230
Query: 232 NPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALS 270
PR+ +GYGFV+FK+KK A+ A+S F KV M I ++
Sbjct: 231 KPRKPSGYGFVAFKTKKEADAALSTFADKVFMGRPIRVA 269
>gi|145332989|ref|NP_001078360.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332657316|gb|AEE82716.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 244
Score = 216 bits (551), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 112/173 (64%), Positives = 138/173 (79%), Gaps = 1/173 (0%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAAL 158
SKTRL+AQNVPWTST EDIR+LFE++G+V+DIE+SMH K RNRGL F+ M SP+EA AL
Sbjct: 32 SKTRLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATAL 91
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNPFPPVQ-PKPFATFNLFIANLSFEARAKDLREFFIS 217
+LES E+EGR LKV+YAK KKK + P + P P TFNLF+ANL+FEARAK L+EFF +
Sbjct: 92 KSLESCEYEGRRLKVDYAKTKKKKTYAPRETPSPVPTFNLFVANLAFEARAKHLKEFFDA 151
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALS 270
+ +VVS EVIFH+NPRRS+GYGFVSFK+KK AE A+ FQGK + I L+
Sbjct: 152 DTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEFQGKDFLGRPIRLA 204
>gi|242082447|ref|XP_002445992.1| hypothetical protein SORBIDRAFT_07g029220 [Sorghum bicolor]
gi|241942342|gb|EES15487.1| hypothetical protein SORBIDRAFT_07g029220 [Sorghum bicolor]
Length = 266
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 92/174 (52%), Positives = 123/174 (70%), Gaps = 3/174 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
E E+ +TRLVAQN+PW ST +++RALF+ HG+V+ +ELSM+S ++NRGLAFVTMGS
Sbjct: 63 ETVEQVGPRTRLVAQNIPWDSTADEMRALFQTHGSVVGVELSMYSASKNRGLAFVTMGSE 122
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPP-VQPKPFATFNLFIANLSFEARAKD 210
++A AAL +L S R +KV++A+ +KK P P V P + +F+ NL++ R +
Sbjct: 123 EDALAALTHLNSTILNDRKIKVDFARPRKKQPKQPVVVSNPMEKYIVFVGNLTWRVRNRH 182
Query: 211 LREFFISEGWDVVSAEVIFH-DNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
LRE F S V+SAEVIFH PRRSAGY FVSF SK+ AE AISAF GK++M
Sbjct: 183 LRELFAS-APGVISAEVIFHTTTPRRSAGYAFVSFSSKETAEAAISAFNGKILM 235
>gi|226492336|ref|NP_001150253.1| ribonucleoprotein [Zea mays]
gi|195637832|gb|ACG38384.1| ribonucleoprotein [Zea mays]
Length = 275
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 93/171 (54%), Positives = 119/171 (69%), Gaps = 3/171 (1%)
Query: 95 EEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEA 154
E+ KTRLVAQN+PW T +++RALFE HG+V+ +ELSM+S N+NRGLAFVTMGS +EA
Sbjct: 65 EQVGPKTRLVAQNIPWDCTADEMRALFESHGSVVGVELSMYSANKNRGLAFVTMGSEEEA 124
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPF-PPVQPKPFATFNLFIANLSFEARAKDLRE 213
AAL +L S R +KV++A+ +KK P P V + +F+ NL++ R + LRE
Sbjct: 125 LAALTHLNSTILNDRKIKVDFARPRKKQPKQPAVVSDATEKYVVFVGNLTWRVRNRHLRE 184
Query: 214 FFISEGWDVVSAEVIFH-DNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
F S VVSAEVIFH PRRSAGY FVSF SK+ A AISAF GK++M
Sbjct: 185 LFASAP-GVVSAEVIFHTTTPRRSAGYAFVSFSSKESAGAAISAFNGKILM 234
>gi|194696360|gb|ACF82264.1| unknown [Zea mays]
gi|414869196|tpg|DAA47753.1| TPA: ribonucleoprotein [Zea mays]
Length = 275
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 93/171 (54%), Positives = 119/171 (69%), Gaps = 3/171 (1%)
Query: 95 EEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEA 154
E+ KTRLVAQN+PW T +++RALFE HG+V+ +ELSM+S N+NRGLAFVTMGS +EA
Sbjct: 65 EQVGPKTRLVAQNIPWDCTADEMRALFESHGSVVGVELSMYSANKNRGLAFVTMGSEEEA 124
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPF-PPVQPKPFATFNLFIANLSFEARAKDLRE 213
AAL +L S R +KV++A+ +KK P P V + +F+ NL++ R + LRE
Sbjct: 125 LAALTHLNSTILNDRKIKVDFARPRKKQPKQPAVVSDDTEKYVVFVGNLTWRVRNRHLRE 184
Query: 214 FFISEGWDVVSAEVIFH-DNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
F S VVSAEVIFH PRRSAGY FVSF SK+ A AISAF GK++M
Sbjct: 185 LFASAP-GVVSAEVIFHTTTPRRSAGYAFVSFSSKESAGAAISAFNGKILM 234
>gi|115476954|ref|NP_001062073.1| Os08g0483200 [Oryza sativa Japonica Group]
gi|42408160|dbj|BAD09298.1| putative RNA-binding protein cp33 [Oryza sativa Japonica Group]
gi|113624042|dbj|BAF23987.1| Os08g0483200 [Oryza sativa Japonica Group]
gi|125561943|gb|EAZ07391.1| hypothetical protein OsI_29641 [Oryza sativa Indica Group]
gi|125603790|gb|EAZ43115.1| hypothetical protein OsJ_27706 [Oryza sativa Japonica Group]
gi|215686913|dbj|BAG90783.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215701414|dbj|BAG92838.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 269
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 88/173 (50%), Positives = 120/173 (69%), Gaps = 4/173 (2%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALN 159
+TRL+AQN+PW T +D+RALF +HG+V+D+ELSM++ RNRGLAFVTMGS +EA +ALN
Sbjct: 72 RTRLIAQNIPWDCTADDMRALFGKHGSVVDVELSMYNSTRNRGLAFVTMGSEEEALSALN 131
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEG 219
+L S RT+KV++ + +KK P P P ++F+ NL++ R++ LRE F S
Sbjct: 132 HLNSTTLNDRTIKVDFTRSRKKQYVVPSAPMP--KHSVFVGNLTWRVRSRHLRELFASTP 189
Query: 220 WDVVSAEVIFH-DNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271
V S EV+FH +PRRSAGYGFVSF SK+ AE AIS F G +M I + +
Sbjct: 190 -GVQSVEVVFHTTSPRRSAGYGFVSFSSKEAAEAAISTFNGTKLMGRSINVMF 241
>gi|51968436|dbj|BAD42910.1| putative protein [Arabidopsis thaliana]
Length = 171
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 76/125 (60%), Positives = 96/125 (76%), Gaps = 2/125 (1%)
Query: 54 HAYTFPIT-PKKVSPFVFHFSATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTS 112
HA TFP + P K +FS TTQ+P ++SSS+++ E EEE SKTRL+AQNVPWTS
Sbjct: 47 HA-TFPDSIPAKSRNLTSYFSTTTQEPVLESSSSSSSAPEVVEEEISKTRLIAQNVPWTS 105
Query: 113 THEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
T EDIR+LFE++G+V+DIE+SMH K RNRGL F+ M SP+EA AL +LES E+EGR LK
Sbjct: 106 TPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATALKSLESCEYEGRRLK 165
Query: 173 VNYAK 177
V+YAK
Sbjct: 166 VDYAK 170
>gi|7267547|emb|CAB78028.1| putative protein [Arabidopsis thaliana]
Length = 225
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 75/117 (64%), Positives = 93/117 (79%), Gaps = 1/117 (0%)
Query: 145 FVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQ-PKPFATFNLFIANLS 203
F+ M SP+EA+ A +LESYE+EGR LKV+YAK KKK + P + P P TFNLF+ANL+
Sbjct: 59 FIEMASPEEASTAFISLESYEYEGRRLKVDYAKTKKKKTYAPRETPSPVPTFNLFVANLA 118
Query: 204 FEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
FEARAK L+EFF ++ +VVS EVIFH+NPRRS+GYGFVSFK+KK AE A+ FQGK
Sbjct: 119 FEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEFQGK 175
>gi|449462067|ref|XP_004148763.1| PREDICTED: 29 kDa ribonucleoprotein B, chloroplastic-like [Cucumis
sativus]
Length = 282
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 92/228 (40%), Positives = 134/228 (58%), Gaps = 10/228 (4%)
Query: 50 SSPFHAYTFPITPKKVSPFVFHFSATTQDPFVDSSSAAAVNTEQREEEYS----KTRLVA 105
SSP + P TP +SP F+ S S+ V E+ EE K +L
Sbjct: 36 SSPLLSLN-PTTP--ISPTSFNSSRNRGGGARLCSALQEVTLEEASEENQDVNQKRKLYI 92
Query: 106 QNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYE 165
N+PW+ + DI+ LF Q GTV D+E+ R+RG AFVTM SPDEA AA+ +S E
Sbjct: 93 FNLPWSLSVVDIKELFGQCGTVSDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQE 152
Query: 166 FEGRTLKVNYAK-IKKKNPFPPVQPKPFATFN-LFIANLSFEARAKDLREFFISEGWDVV 223
GR +KV +AK +KK P P P P T N L+++NL+++ R+ +LR+FF SE ++ +
Sbjct: 153 ISGRVIKVEFAKRLKKPPPPKPPGPPPGETVNKLYVSNLAWKVRSNNLRDFF-SENFNPI 211
Query: 224 SAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271
+A V+F RSAGYGFVSF +++ A+TA+S+ +GK +M + L +
Sbjct: 212 AARVVFDSPAGRSAGYGFVSFATREEAQTALSSLEGKELMGRPLRLKF 259
Score = 37.4 bits (85), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALN 159
+L N+ W ++R F ++ + + S R+ G FV+ + +EA AL+
Sbjct: 184 NKLYVSNLAWKVRSNNLRDFFSENFNPIAARVVFDSPAGRSAGYGFVSFATREEAQTALS 243
Query: 160 NLESYEFEGRTLKVNYAK 177
+LE E GR L++ +++
Sbjct: 244 SLEGKELMGRPLRLKFSE 261
>gi|449515273|ref|XP_004164674.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
Length = 288
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 92/228 (40%), Positives = 134/228 (58%), Gaps = 10/228 (4%)
Query: 50 SSPFHAYTFPITPKKVSPFVFHFSATTQDPFVDSSSAAAVNTEQREEEYS----KTRLVA 105
SSP + P TP +SP F+ S S+ V E+ EE K +L
Sbjct: 42 SSPLLSLN-PTTP--ISPTSFNSSRNRGGGARLCSALQEVTLEEASEENQDVNQKRKLYI 98
Query: 106 QNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYE 165
N+PW+ + DI+ LF Q GTV D+E+ R+RG AFVTM SPDEA AA+ +S E
Sbjct: 99 FNLPWSLSVVDIKELFGQCGTVSDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQE 158
Query: 166 FEGRTLKVNYAK-IKKKNPFPPVQPKPFATFN-LFIANLSFEARAKDLREFFISEGWDVV 223
GR +KV +AK +KK P P P P T N L+++NL+++ R+ +LR+FF SE ++ +
Sbjct: 159 ISGRVIKVEFAKRLKKPPPPKPPGPPPGETVNKLYVSNLAWKVRSNNLRDFF-SENFNPI 217
Query: 224 SAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271
+A V+F RSAGYGFVSF +++ A+TA+S+ +GK +M + L +
Sbjct: 218 AARVVFDSPAGRSAGYGFVSFATREEAQTALSSLEGKELMGRPLRLKF 265
Score = 37.4 bits (85), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALN 159
+L N+ W ++R F ++ + + S R+ G FV+ + +EA AL+
Sbjct: 190 NKLYVSNLAWKVRSNNLRDFFSENFNPIAARVVFDSPAGRSAGYGFVSFATREEAQTALS 249
Query: 160 NLESYEFEGRTLKVNYAK 177
+LE E GR L++ +++
Sbjct: 250 SLEGKELMGRPLRLKFSE 267
>gi|15226983|ref|NP_181084.1| RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis
thaliana]
gi|3608147|gb|AAC36180.1| putative chloroplast RNA binding protein precursor [Arabidopsis
thaliana]
gi|14596023|gb|AAK68739.1| putative chloroplast RNA binding protein precursor [Arabidopsis
thaliana]
gi|23198314|gb|AAN15684.1| putative chloroplast RNA binding protein precursor [Arabidopsis
thaliana]
gi|330254012|gb|AEC09106.1| RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis
thaliana]
Length = 308
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 76/204 (37%), Positives = 118/204 (57%), Gaps = 5/204 (2%)
Query: 73 SATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIEL 132
S ++ D ++ TE+ + K +L N+PW+ + DI LF Q GTV ++E+
Sbjct: 67 SVAEKETSADEETSQEEKTEETQNSNLKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEI 126
Query: 133 SMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA-KIKKKNPFPPVQ--- 188
+NRG AFVTM S +EA AA++ ++++ GR + V++A + KK P P
Sbjct: 127 IRQKDGKNRGFAFVTMASGEEAQAAIDKFDTFQVSGRIISVSFARRFKKPTPKSPNDLPS 186
Query: 189 PKPFAT-FNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSK 247
P P T L+++NL+++AR+ LRE F + ++ VSA V+F D RS+GYGFVSF ++
Sbjct: 187 PAPGDTRHKLYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPEGRSSGYGFVSFATR 246
Query: 248 KVAETAISAFQGKVIMCLVIALSY 271
+ AE AI+ GK IM I L +
Sbjct: 247 EEAENAITKLNGKEIMGRPITLKF 270
>gi|224138144|ref|XP_002326529.1| predicted protein [Populus trichocarpa]
gi|222833851|gb|EEE72328.1| predicted protein [Populus trichocarpa]
Length = 294
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 78/210 (37%), Positives = 116/210 (55%), Gaps = 11/210 (5%)
Query: 68 FVFHFSATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTV 127
F +T Q+ V+ + E+ +E K +L N+PW+ + DI+ LF Q GTV
Sbjct: 65 LCFQLCSTVQEVTVEITP----EEEEIQEANLKRKLFVVNLPWSFSVVDIKDLFGQCGTV 120
Query: 128 LDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPV 187
D+E+ R+RG AFVTM + +EA AA++ S E GR ++V +AK ++ P P +
Sbjct: 121 SDVEIIKQKNGRSRGFAFVTMTTGEEAQAAIDKFNSLEVSGRIIRVEFAKRLRRPPSPRL 180
Query: 188 QPKPF------ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGF 241
P L+I+NL+++ R LREFF S + VS+ V+F RS+GYGF
Sbjct: 181 PGTPADIPAGETRHKLYISNLAWKVRGSHLREFF-STNCNPVSSRVVFDGPAGRSSGYGF 239
Query: 242 VSFKSKKVAETAISAFQGKVIMCLVIALSY 271
VSF +++ A AISAF GK +M I L +
Sbjct: 240 VSFATREEAVAAISAFSGKELMGRPIRLKF 269
>gi|118489861|gb|ABK96729.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 294
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 74/186 (39%), Positives = 108/186 (58%), Gaps = 7/186 (3%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
E+ +E K +L N+PW+ + DI+ LF Q GTV D+E+ R+RG AFVTM +
Sbjct: 85 EEIQEANLKRKLFVVNLPWSFSVVDIKDLFGQCGTVSDVEIIKQKNGRSRGFAFVTMTTG 144
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPF------ATFNLFIANLSFE 205
+EA AA++ S E GR ++V +AK ++ P P + P L+I+NL+++
Sbjct: 145 EEAQAAIDKFNSLEVSGRIIRVEFAKRLRRPPSPRLPGTPADIPAGETRHKLYISNLAWK 204
Query: 206 ARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCL 265
R LREFF S + VS+ V+F RS+GYGFVSF +++ A AISAF GK +M
Sbjct: 205 VRGSHLREFF-STNCNPVSSRVVFDGPAGRSSGYGFVSFATREEAVAAISAFSGKELMGR 263
Query: 266 VIALSY 271
I L +
Sbjct: 264 PIRLKF 269
>gi|297823333|ref|XP_002879549.1| hypothetical protein ARALYDRAFT_482506 [Arabidopsis lyrata subsp.
lyrata]
gi|297325388|gb|EFH55808.1| hypothetical protein ARALYDRAFT_482506 [Arabidopsis lyrata subsp.
lyrata]
Length = 308
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 74/200 (37%), Positives = 116/200 (58%), Gaps = 11/200 (5%)
Query: 82 DSSSAAAVNTEQREEEYSKTRLVAQ----NVPWTSTHEDIRALFEQHGTVLDIELSMHSK 137
++S+ + E++ EE K+ L + N+PW+ + DI LF Q GTV ++E+
Sbjct: 72 ETSAEEETSQEEKTEETQKSNLKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKD 131
Query: 138 NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF-- 195
+NRG AFVTM S +EA AA++ ++ + GR + VN+A+ KK P P +
Sbjct: 132 GKNRGFAFVTMASGEEAQAAIDKFDTSQVSGRIISVNFARRFKK-PTPKPPNDLPSPPPG 190
Query: 196 ----NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAE 251
L+++NL+++AR+ LRE F + ++ VSA V+F D RS+GYGFVSF +++ AE
Sbjct: 191 DTRHKLYVSNLAWKARSTHLRELFTASDFNPVSARVVFADPEGRSSGYGFVSFATREEAE 250
Query: 252 TAISAFQGKVIMCLVIALSY 271
AI+ GK IM I L +
Sbjct: 251 DAIAKLDGKEIMGRPIILKF 270
>gi|255573485|ref|XP_002527668.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
gi|223532973|gb|EEF34739.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
Length = 278
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 83/228 (36%), Positives = 128/228 (56%), Gaps = 15/228 (6%)
Query: 46 FPLSSSPFHAYTFPITPKKVSPFVFHFSATTQDPFVDSSSAAAVNTEQREEEYSKTRLVA 105
PL S F +T +K+S F +T Q+ + E+ +E K +L
Sbjct: 40 IPLLSHNFSLSNIHLTARKLS---FERFSTAQEIMI---------PEETQETTQKRKLYV 87
Query: 106 QNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYE 165
N+PW+ + DI+ LF Q GTV D+E+ R+RG AFVT+ S +EA AA++ L+S+E
Sbjct: 88 FNLPWSLSVVDIKNLFGQCGTVTDVEIIKQKNGRSRGFAFVTLASGEEAQAAIDKLDSHE 147
Query: 166 FEGRTLKVNYAK-IKKKNPFPPVQPKPFAT-FNLFIANLSFEARAKDLREFFISEGWDVV 223
GR ++V +AK +K +P P T ++++NL+++ R+ LREFF S + V
Sbjct: 148 VSGRIIRVEFAKRLKPPSPPSPTGTSARETRHKIYVSNLAWKVRSTHLREFF-STNFSPV 206
Query: 224 SAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271
S+ V+F RS+GYGFVSF +++ AE AISA GK +M + L +
Sbjct: 207 SSRVVFDSPTGRSSGYGFVSFATREEAEAAISALDGKELMGRPLRLKF 254
>gi|225427185|ref|XP_002279685.1| PREDICTED: 29 kDa ribonucleoprotein B, chloroplastic [Vitis
vinifera]
Length = 288
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/209 (37%), Positives = 115/209 (55%), Gaps = 12/209 (5%)
Query: 68 FVFHFSATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTV 127
F F ++ Q+ V++ EQ +E K +L N+PW+ + DI+ LF + GTV
Sbjct: 62 FSFELCSSVQEIEVEA------KPEQTQEPNQKRKLFVLNLPWSLSVVDIKNLFGECGTV 115
Query: 128 LDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPV 187
D+E+ R+RG AFVTM S +EA A + +SYE GR ++V +AK KK PP
Sbjct: 116 TDVEIIKQKDGRSRGYAFVTMDSGEEAQAVVEKFDSYELSGRIIRVEFAKRFKKPSPPPP 175
Query: 188 QPKPFATF-----NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFV 242
P L+++NL+++ R+ LREFF S ++ VS V+F RS GYGF
Sbjct: 176 PPPAGPPAGETRHKLYVSNLAWKVRSTHLREFF-SSNFNPVSVRVVFDSPSGRSGGYGFA 234
Query: 243 SFKSKKVAETAISAFQGKVIMCLVIALSY 271
SF +K+ AE AISA GK +M + L +
Sbjct: 235 SFATKEEAEAAISALDGKELMGRPVHLKF 263
>gi|297742089|emb|CBI33876.3| unnamed protein product [Vitis vinifera]
Length = 258
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 79/211 (37%), Positives = 116/211 (54%), Gaps = 12/211 (5%)
Query: 66 SPFVFHFSATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHG 125
+ F F ++ Q+ V++ EQ +E K +L N+PW+ + DI+ LF + G
Sbjct: 30 TKFSFELCSSVQEIEVEA------KPEQTQEPNQKRKLFVLNLPWSLSVVDIKNLFGECG 83
Query: 126 TVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFP 185
TV D+E+ R+RG AFVTM S +EA A + +SYE GR ++V +AK KK P
Sbjct: 84 TVTDVEIIKQKDGRSRGYAFVTMDSGEEAQAVVEKFDSYELSGRIIRVEFAKRFKKPSPP 143
Query: 186 PVQPKPFATF-----NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYG 240
P P L+++NL+++ R+ LREFF S ++ VS V+F RS GYG
Sbjct: 144 PPPPPAGPPAGETRHKLYVSNLAWKVRSTHLREFF-SSNFNPVSVRVVFDSPSGRSGGYG 202
Query: 241 FVSFKSKKVAETAISAFQGKVIMCLVIALSY 271
F SF +K+ AE AISA GK +M + L +
Sbjct: 203 FASFATKEEAEAAISALDGKELMGRPVHLKF 233
>gi|7267548|emb|CAB78029.1| putative protein [Arabidopsis thaliana]
Length = 211
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 66/111 (59%), Positives = 84/111 (75%), Gaps = 2/111 (1%)
Query: 54 HAYTFPIT-PKKVSPFVFHFSATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTS 112
HA TFP + P K +FS TTQ+P ++SSS+++ E EEE SKTRL+AQNVPWTS
Sbjct: 47 HA-TFPDSIPAKSRNLTSYFSTTTQEPVLESSSSSSSAPEVVEEEISKTRLIAQNVPWTS 105
Query: 113 THEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLES 163
T EDIR+LFE++G+V+DIE+SMH K RNRGL F+ M SP+EA AL +LES
Sbjct: 106 TPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATALKSLES 156
>gi|326507746|dbj|BAJ86616.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 192
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 69/134 (51%), Positives = 85/134 (63%), Gaps = 4/134 (2%)
Query: 139 RNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLF 198
+NRGLAFVTMGS +EA +AL NL RT+KV++AK KKK P P P +F
Sbjct: 33 KNRGLAFVTMGSEEEALSALKNLNLSTLNDRTIKVDFAKPKKKQPAVPSA--PVEKNVVF 90
Query: 199 IANLSFEARAKDLREFFISEGWDVVSAEVIFH-DNPRRSAGYGFVSFKSKKVAETAISAF 257
+ NL++ R++ LRE F S V S EVIFH PRRSAGYGFVSF SK+ AE AIS F
Sbjct: 91 VGNLTWRVRSRHLRELFASTP-GVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTF 149
Query: 258 QGKVIMCLVIALSY 271
GK +M I + +
Sbjct: 150 NGKELMGRSINVMF 163
Score = 37.4 bits (85), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSKN--RNRGLAFVTMGSPDEATAALNNLESY 164
N+ W +R LF V +E+ H+ R+ G FV+ S +EA AA++
Sbjct: 93 NLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGK 152
Query: 165 EFEGRTLKVNY 175
E GR++ V +
Sbjct: 153 ELMGRSINVMF 163
>gi|357165665|ref|XP_003580455.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like isoform 1
[Brachypodium distachyon]
gi|357165668|ref|XP_003580456.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like isoform 2
[Brachypodium distachyon]
Length = 286
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 87/244 (35%), Positives = 137/244 (56%), Gaps = 9/244 (3%)
Query: 29 PFVSLLQKQQKQHYNYFFPLSSSPFHAYTFPITPKKVSPFVFHFSATTQDPFVDSSSAAA 88
P + LQ+ + H+ PL+ SP Y P ++ S+ + D+ + A
Sbjct: 11 PAAAALQRPRITHFAALLPLTRSPRQPY--PRLRLRLPAPAVAASSAPEAQVADAEAVAE 68
Query: 89 VNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTM 148
E++EEE + VA N+PWT +I LF + G V D+++ R RG AFVTM
Sbjct: 69 GGEEEKEEERRRNLYVA-NLPWTLPAVEIEKLFAECGVVKDVQVIKMKDGRKRGFAFVTM 127
Query: 149 GSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKP-FATFNLFIANLSFEAR 207
GS +EA AA+ SY+ GR +KV ++K +K P PP P FA L+++NL+++AR
Sbjct: 128 GSAEEAAAAVEKFNSYDVMGRIIKVEFSKTFRK-PAPPRIPSTIFARHKLYVSNLAWKAR 186
Query: 208 AKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVI 267
+ D++ FF ++ +SA V+F D ++SAGYGFVSF++K+ AE A+S GK ++ +
Sbjct: 187 SSDIKAFFSQ--FNPISANVVFDD--KKSAGYGFVSFQTKEDAEAALSELNGKELLERPV 242
Query: 268 ALSY 271
L +
Sbjct: 243 LLRW 246
>gi|388521331|gb|AFK48727.1| unknown [Lotus japonicus]
Length = 285
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/174 (37%), Positives = 100/174 (57%), Gaps = 2/174 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
+ ++ Y K +L N+PW+ + DI+ LF Q GTV D+E+ R +G AFVTM S
Sbjct: 77 QDQQATYIKKKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRGKGYAFVTMASG 136
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPF--ATFNLFIANLSFEARAK 209
+EA AA++ ++ E GR L+V AK KK P P A ++ +NL+++ R+
Sbjct: 137 EEAQAAVDKFDTLELSGRILRVELAKRFKKPSPPGPPSPPPSEARHVIYASNLAWKVRST 196
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
LREFF +SA ++F ++ GYGF+S+ +K+ AE AISA GK +M
Sbjct: 197 HLREFFTENFKAPLSARIVFDTPSGKTTGYGFISYLTKEEAEAAISALDGKELM 250
>gi|363814334|ref|NP_001242808.1| uncharacterized protein LOC100793319 [Glycine max]
gi|255639879|gb|ACU20232.1| unknown [Glycine max]
Length = 289
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 72/173 (41%), Positives = 99/173 (57%), Gaps = 3/173 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNL 161
+L N+ W+ T DI LF Q GTV D+E+ R++G AFVTM S +EA AA++
Sbjct: 81 KLYVVNLSWSLTAADINDLFAQSGTVTDVEIIKSKDGRSKGYAFVTMASGEEAQAAVDKF 140
Query: 162 ESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFN---LFIANLSFEARAKDLREFFISE 218
+SYE GR ++V AK KK P PP P P ++ +NL+++AR+ LR+ F
Sbjct: 141 DSYELSGRIIRVELAKRFKKPPSPPPPPGPRPGETRHVIYASNLAWKARSTHLRQLFAEN 200
Query: 219 GWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271
SA V+F RSAGYGFVSF +K+ AE AIS GK +M + L +
Sbjct: 201 FKTPSSARVVFDSPSGRSAGYGFVSFLTKEDAEAAISTVDGKELMGRPLRLKF 253
>gi|326503644|dbj|BAJ86328.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 285
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 72/188 (38%), Positives = 112/188 (59%), Gaps = 8/188 (4%)
Query: 87 AAVNTEQREEEYSKTR--LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLA 144
AA + +EE +TR L N+P+T + + LF + G V D+E+ R RG A
Sbjct: 63 AAEPAAEGDEELGETRRKLFVGNMPFTFSAAETEKLFAECGVVKDVEVIKMKDGRKRGFA 122
Query: 145 FVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPF-ATFNLFIANLS 203
FVTM + +EA A + + ++ GR +KV ++K +K P PP P A + L+++NL+
Sbjct: 123 FVTMATAEEAAAVVEKFDGHDINGRVIKVEFSKSFRK-PAPPSSPDTIVAKYKLYVSNLA 181
Query: 204 FEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
++AR+ DL+EFF ++ VSA ++F D R+SAGYGFVSF +K+ AE A+S GK +M
Sbjct: 182 WKARSADLKEFFSQ--FNPVSANIVFDD--RKSAGYGFVSFGTKEEAEAALSELNGKELM 237
Query: 264 CLVIALSY 271
+ L +
Sbjct: 238 ERPVILRW 245
>gi|242076980|ref|XP_002448426.1| hypothetical protein SORBIDRAFT_06g026990 [Sorghum bicolor]
gi|241939609|gb|EES12754.1| hypothetical protein SORBIDRAFT_06g026990 [Sorghum bicolor]
Length = 278
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 67/173 (38%), Positives = 105/173 (60%), Gaps = 9/173 (5%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALN 159
+ +L N+PW+ +I LF QHGTV D+E+ RNRG AFVTM + +EA AA
Sbjct: 74 RRKLYVANLPWSFPAPEIEKLFAQHGTVKDVEVIKGKDGRNRGFAFVTMSTTEEAAAAAE 133
Query: 160 NLESYEFEGRTLKVNYAK-IKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISE 218
L S++ GRT+KV +++ +K P PP+ L+++NL ++ARA +++EFF
Sbjct: 134 KLNSHDVMGRTIKVEFSRSFRKPAPLPPI----IERHKLYVSNLPWKARAPNVKEFFAK- 188
Query: 219 GWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271
++ +SA VIF + ++AGY FVSF +K+ AE A++ GK +M + L +
Sbjct: 189 -FNPLSANVIFDNG--KAAGYCFVSFGTKEEAEAALTELDGKELMGRPVRLYW 238
>gi|326496905|dbj|BAJ98479.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/182 (38%), Positives = 110/182 (60%), Gaps = 8/182 (4%)
Query: 93 QREEEYSKTR--LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGS 150
+ +EE +TR L N+P+T + + LF + G V D+E+ R RG AFVTM +
Sbjct: 50 EGDEELGETRRKLFVGNMPFTFSAAETEKLFAECGVVKDVEVIKMKDGRKRGFAFVTMAT 109
Query: 151 PDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPF-ATFNLFIANLSFEARAK 209
+EA A + + ++ GR +KV ++K +K P PP P A + L+++NL+++AR+
Sbjct: 110 AEEAAAVVEKFDGHDINGRVIKVEFSKSFRK-PAPPSSPDTIVAKYKLYVSNLAWKARSA 168
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIAL 269
DL+EFF ++ VSA ++F D R+SAGYGFVSF +K+ AE A+S GK +M + L
Sbjct: 169 DLKEFFSQ--FNPVSANIVFDD--RKSAGYGFVSFGTKEEAEAALSELNGKELMERPVIL 224
Query: 270 SY 271
+
Sbjct: 225 RW 226
>gi|356531425|ref|XP_003534278.1| PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 282
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/173 (40%), Positives = 98/173 (56%), Gaps = 3/173 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNL 161
+L N+ W+ T DI LF Q GTV D+E+ R++G AFVTM S +EA AA++
Sbjct: 74 KLYVVNLSWSLTAADITDLFAQCGTVTDVEIIKSKDGRSKGYAFVTMASGEEAQAAVDKF 133
Query: 162 ESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFN---LFIANLSFEARAKDLREFFISE 218
+SYE GR ++V AK KK P P P P ++ +NL+++AR+ LR+ F
Sbjct: 134 DSYELSGRIIRVELAKRLKKPPSLPPPPGPRPGETRHVIYASNLAWKARSTHLRQVFTEN 193
Query: 219 GWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271
SA V+F RSAGYGFVSF +++ AE AIS GK +M + L +
Sbjct: 194 FKTPSSARVVFDSPSGRSAGYGFVSFLTREDAEAAISTVDGKELMGRPLRLKF 246
>gi|226499642|ref|NP_001147738.1| plastid-specific 30S ribosomal protein 2 [Zea mays]
gi|195613392|gb|ACG28526.1| plastid-specific 30S ribosomal protein 2 [Zea mays]
gi|414585685|tpg|DAA36256.1| TPA: plastid-specific 30S ribosomal protein 2 [Zea mays]
Length = 272
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/186 (37%), Positives = 112/186 (60%), Gaps = 4/186 (2%)
Query: 86 AAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAF 145
A A + E+ + +L N+PW+ +I LF QHGTV D+E+ RNRG AF
Sbjct: 51 AQAAPVAEDEQGEKRRKLYVANLPWSFPAPEIEKLFAQHGTVKDVEVIKGKDGRNRGFAF 110
Query: 146 VTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFE 205
VTM + +EA AA + L S++ GRT+KV ++K ++ PP L+++NL ++
Sbjct: 111 VTMSTAEEAAAAADKLNSHDVMGRTIKVEFSKSFRRPAPPPPPGTIIERHKLYVSNLPWK 170
Query: 206 ARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCL 265
ARA +++EFF + ++ +SA VIF + ++AGYGFVSF +K+ AE A++ GK ++
Sbjct: 171 ARAPNVKEFFAN--FNPLSANVIFDNG--KAAGYGFVSFGTKEEAEAALTELDGKELLGR 226
Query: 266 VIALSY 271
+ L++
Sbjct: 227 PVRLNW 232
>gi|388504962|gb|AFK40547.1| unknown [Lotus japonicus]
Length = 285
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/174 (37%), Positives = 98/174 (56%), Gaps = 2/174 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
+ ++ Y K +L +PW+ + DI+ LF Q GTV D+E+ R +G AFVTM S
Sbjct: 77 QDQQATYIKKKLYVFTLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRGKGYAFVTMASG 136
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPF--ATFNLFIANLSFEARAK 209
+EA AA++ ++ E GR L+V AK KK P P A ++ +NL+++ R+
Sbjct: 137 EEAQAAVDKFDTLELSGRILRVELAKRFKKPSPPGPPSPPPSEARHVIYASNLAWKVRST 196
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
LREFF +SA ++F + GYGF+S+ +K+ AE AISA GK +M
Sbjct: 197 HLREFFTENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELM 250
>gi|238010966|gb|ACR36518.1| unknown [Zea mays]
gi|414869197|tpg|DAA47754.1| TPA: hypothetical protein ZEAMMB73_464077 [Zea mays]
Length = 169
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 52/92 (56%), Positives = 69/92 (75%)
Query: 95 EEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEA 154
E+ KTRLVAQN+PW T +++RALFE HG+V+ +ELSM+S N+NRGLAFVTMGS +EA
Sbjct: 65 EQVGPKTRLVAQNIPWDCTADEMRALFESHGSVVGVELSMYSANKNRGLAFVTMGSEEEA 124
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPP 186
AAL +L S R +KV++A+ +KK P P
Sbjct: 125 LAALTHLNSTILNDRKIKVDFARPRKKQPKQP 156
>gi|357141664|ref|XP_003572305.1| PREDICTED: 29 kDa ribonucleoprotein B, chloroplastic-like
[Brachypodium distachyon]
Length = 250
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 67/173 (38%), Positives = 93/173 (53%), Gaps = 36/173 (20%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALN 159
+TRL+A N+PW T +D+RALFE+ G+V+ +E LN
Sbjct: 85 RTRLIAMNIPWDYTPDDMRALFEKQGSVVSVE-------------------------TLN 119
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEG 219
+ RT+KV++AK +KK P P P +F+ NL++ R++ LRE F S
Sbjct: 120 D--------RTIKVDFAKPRKKQPTVPSAPMQNKHI-VFVGNLTWRVRSRHLRELFASTP 170
Query: 220 WDVVSAEVIFHDN-PRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271
V S EVIF PRRSAGY FVSF SK+ AE AIS F GK ++ I +++
Sbjct: 171 -GVQSVEVIFQTTTPRRSAGYAFVSFSSKEEAEAAISTFNGKELLGRPINVTF 222
>gi|357485175|ref|XP_003612875.1| 31 kDa ribonucleoprotein [Medicago truncatula]
gi|355514210|gb|AES95833.1| 31 kDa ribonucleoprotein [Medicago truncatula]
Length = 324
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/174 (39%), Positives = 104/174 (59%), Gaps = 3/174 (1%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALN 159
K L+ N+PW+ + DI+ LF Q GTV+D+E+ + +G FVTM S + A AA++
Sbjct: 95 KKNLIVFNLPWSLSKPDIKDLFGQCGTVIDVEIIKSKDGKGKGYTFVTMDSGEGAQAAVD 154
Query: 160 NLESYEFEGRTLKVNYAK-IKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISE 218
+ E GR L+V +AK KK P PP A + ++ +NL+++AR+ LR+ F
Sbjct: 155 KFNATEISGRILRVEFAKGFKKPRPPPPAPTPKEARYVIYASNLAWKARSTHLRDIFTEN 214
Query: 219 GWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIALS 270
VSA V+F +SAGYGFVS+ +++ AE AISA QGK ++ L++ +S
Sbjct: 215 FKTPVSARVVFQVPGGKSAGYGFVSYHTEEEAEAAISALQGKELLGRPLLVKIS 268
>gi|168033890|ref|XP_001769447.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679367|gb|EDQ65816.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 224
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/168 (38%), Positives = 92/168 (54%), Gaps = 5/168 (2%)
Query: 95 EEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPD 152
EEE +T+L N+PWT + + HGTV +E+ ++ K R+RG AFVTM +P+
Sbjct: 38 EEEQFETKLYVGNLPWTCDSAQLAEICSDHGTVDVVEV-IYDKISGRSRGFAFVTMATPE 96
Query: 153 EATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFN-LFIANLSFEARAKDL 211
+A A +N L+ + GR LKVNY + +K P +P N LF+ NLS+ L
Sbjct: 97 DAQAVINALDGTDMGGRPLKVNYPQSQKDKPRVERSERPRDDANKLFVGNLSWGCDEAAL 156
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
FF SE VV A+V+F + RS G+GFV+ +S A AI G
Sbjct: 157 YSFF-SEYGTVVDAKVVFDRDSGRSRGFGFVTMESAAAANAAIENLDG 203
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAALN 159
+L N+ W + + F ++GTV+D ++ R+RG FVTM S A AA+
Sbjct: 140 NKLFVGNLSWGCDEAALYSFFSEYGTVVDAKVVFDRDSGRSRGFGFVTMESAAAANAAIE 199
Query: 160 NLESYEFEGRTLKVNYAKIK 179
NL+ E +GR L+VN A K
Sbjct: 200 NLDGAELDGRRLRVNLAGEK 219
>gi|388503916|gb|AFK40024.1| unknown [Medicago truncatula]
Length = 324
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 67/174 (38%), Positives = 103/174 (59%), Gaps = 3/174 (1%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALN 159
K L+ N+PW+ + DI+ LF Q GTV+D+E+ + +G FVTM S + A AA++
Sbjct: 95 KKNLIVFNLPWSLSKPDIKDLFGQCGTVIDVEIIKSKDGKGKGYTFVTMDSGEGAQAAVD 154
Query: 160 NLESYEFEGRTLKVNYAK-IKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISE 218
+ E GR L+V +AK KK P PP A + ++ +NL+++AR+ LR+ F
Sbjct: 155 KFNATEISGRILRVEFAKGFKKPRPPPPAPTPKEARYVIYASNLAWKARSTHLRDIFTEN 214
Query: 219 GWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIALS 270
VSA V+F +SAGYGFVS+ +++ AE AI A QGK ++ L++ +S
Sbjct: 215 FKTPVSARVVFQVPGGKSAGYGFVSYHTEEEAEAAIFALQGKELLGRPLLVKIS 268
>gi|357157795|ref|XP_003577917.1| PREDICTED: 30S ribosomal protein 2, chloroplastic-like
[Brachypodium distachyon]
Length = 244
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 62/170 (36%), Positives = 98/170 (57%), Gaps = 10/170 (5%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDE 153
EE + +L N+P T T++++RA+F HGTVL ++ M+ K R+R FVTM S +E
Sbjct: 64 EELATRKLYVGNIPRTVTNDELRAMFADHGTVLRADV-MYDKYSGRSRRFGFVTMSSVEE 122
Query: 154 ATAALNNLESYEFEGRTLKVNYAK--IKKKNPFPPVQPKPF---ATFNLFIANLSFEARA 208
A AA+ +L E GR +KVN + + +P P +P+P + + +++ NL+
Sbjct: 123 ANAAIESLNETEVGGRKIKVNVTESFLPNIDPSAP-EPEPAFVDSQYKVYVGNLAKTVTT 181
Query: 209 KDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ 258
+ L+ FF SE +V+SA V +S GYGFV+F S++ E A+S F
Sbjct: 182 EVLKNFF-SEKGEVLSATVSRIPGTPKSKGYGFVTFSSEEEVEAAVSTFN 230
Score = 40.4 bits (93), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELS-MHSKNRNRGLAFVTMGSPDEATAA 157
S+ ++ N+ T T E ++ F + G VL +S + +++G FVT S +E AA
Sbjct: 166 SQYKVYVGNLAKTVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGFVTFSSEEEVEAA 225
Query: 158 LNNLESYEFEGRTLKVNYA 176
++ + E EG+ ++VN A
Sbjct: 226 VSTFNNTELEGQPIRVNRA 244
>gi|125549538|gb|EAY95360.1| hypothetical protein OsI_17193 [Oryza sativa Indica Group]
Length = 290
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 101/172 (58%), Gaps = 3/172 (1%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALN 159
+ +L N+PW+ +I LF Q G V D+E+ + +G AFVTM + +EA AA+
Sbjct: 79 RRKLYVANIPWSFPAPEIEKLFAQCGAVKDVEVIKGKDGKKKGFAFVTMATAEEAAAAVE 138
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEG 219
L S + GRT++V ++K +K P PP L+++NL ++ARA +++EF
Sbjct: 139 KLNSLDVMGRTIRVEFSKSFRK-PAPPPPGTILERHKLYVSNLPWKARAPNMKEF--CSK 195
Query: 220 WDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271
++ +SA+V+F +SAGYGFVSF +K+ AE A++ GK +M + L +
Sbjct: 196 FNPLSAKVVFDSPSGKSAGYGFVSFGTKEEAEAALTELDGKELMGRPVRLRW 247
>gi|224099981|ref|XP_002311696.1| predicted protein [Populus trichocarpa]
gi|118486835|gb|ABK95252.1| unknown [Populus trichocarpa]
gi|222851516|gb|EEE89063.1| predicted protein [Populus trichocarpa]
Length = 279
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 102/198 (51%), Gaps = 7/198 (3%)
Query: 64 KVSPFVFHFSATTQDPFVDSSSAAAVNTEQREEEYS-KTRLVAQNVPWTSTHEDIRALFE 122
+ S V A P V+ A+ TE ++ T+L N+P+ + + +
Sbjct: 69 RASADVAQEEAPATAPAVEEEELASGETEGEADQVPVNTKLYFGNLPYNVDSAQLAGMIQ 128
Query: 123 QHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKK 181
++GT +E+ H + R+RG AFVTM S ++ + NL+ ++ GR L+VN+A K
Sbjct: 129 EYGTPEMVEVLYHRETGRSRGFAFVTMSSIEDCETVIENLDGSQYMGRILRVNFA--DKP 186
Query: 182 NPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGF 241
P P+ P+ + LFI NLS+ ++ L + F G +VV A V++ +S GYGF
Sbjct: 187 KPKEPLYPE--TEYKLFIGNLSWSVTSESLTQAFQEYG-NVVGARVLYDGETGKSRGYGF 243
Query: 242 VSFKSKKVAETAISAFQG 259
V + +K+ ETA+ + G
Sbjct: 244 VCYSTKEELETALQSLNG 261
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 95 EEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE 153
E EY +L N+ W+ T E + F+++G V+ + + ++RG FV + +E
Sbjct: 195 ETEY---KLFIGNLSWSVTSESLTQAFQEYGNVVGARVLYDGETGKSRGYGFVCYSTKEE 251
Query: 154 ATAALNNLESYEFEGRTLKVNYAKIKK 180
AL +L E EGR L+V+ A+ +K
Sbjct: 252 LETALQSLNGVELEGRALRVSLAEGRK 278
>gi|296083731|emb|CBI23720.3| unnamed protein product [Vitis vinifera]
Length = 283
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 91/169 (53%), Gaps = 6/169 (3%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVTMGS 150
E+ E T+L N+P++ + + + +G+ +E L R+RG AFVTM S
Sbjct: 102 EEGAESPVNTKLYFGNLPYSCDSAQLAGIIQNYGSPELVEVLYNRDTGRSRGFAFVTMSS 161
Query: 151 PDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKD 210
++ A + NL+ E+ GRTL+VN++ K P P+ P+ + LF+ NLS+ ++
Sbjct: 162 VEDCNAVIENLDGSEYGGRTLRVNFS--DKPKPKLPLYPE--TEYKLFVGNLSWSVTSES 217
Query: 211 LREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
L + F G +V+ A V++ RS GYGFV + +K +TA+ + G
Sbjct: 218 LNQVFQEYG-NVIGARVLYDGETGRSRGYGFVCYSTKAEMDTALESLNG 265
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 95 EEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE 153
E EY +L N+ W+ T E + +F+++G V+ + + R+RG FV + E
Sbjct: 199 ETEY---KLFVGNLSWSVTSESLNQVFQEYGNVIGARVLYDGETGRSRGYGFVCYSTKAE 255
Query: 154 ATAALNNLESYEFEGRTLKVNYAKIKK 180
AL +L E EGR ++++ A+ ++
Sbjct: 256 MDTALESLNGVELEGRAIRISLAQGRR 282
>gi|242047468|ref|XP_002461480.1| hypothetical protein SORBIDRAFT_02g003310 [Sorghum bicolor]
gi|241924857|gb|EER98001.1| hypothetical protein SORBIDRAFT_02g003310 [Sorghum bicolor]
Length = 338
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 92/175 (52%), Gaps = 8/175 (4%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAALN 159
RL N+P+T T E++ +F + G V D ++ ++ K NR+RG AFVTM + +EA A+
Sbjct: 111 RLFVGNLPYTYTSEELAQVFAEAGRVDDAQI-IYDKVTNRSRGFAFVTMATAEEAAKAIQ 169
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPV----QPKPFATFNLFIANLSFEARAKDLREFF 215
+ GRT +VNY ++ + V + + T+ ++ NL + RA LR F
Sbjct: 170 MFDGALLGGRTARVNYPEVPRGGERRTVTMAGRRRDDGTYKIYAGNLGWGVRADTLRNVF 229
Query: 216 ISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALS 270
++ A VIF RS G+GFVSF++ + A+ A+ A G + + LS
Sbjct: 230 EGRAG-LLDARVIFERETGRSRGFGFVSFRTAEDAQAALEALDGVELEGRPLRLS 283
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 89 VNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVT 147
V R + ++ A N+ W + +R +FE +LD + + R+RG FV+
Sbjct: 197 VTMAGRRRDDGTYKIYAGNLGWGVRADTLRNVFEGRAGLLDARVIFERETGRSRGFGFVS 256
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYAK 177
+ ++A AAL L+ E EGR L+++ A+
Sbjct: 257 FRTAEDAQAALEALDGVELEGRPLRLSLAE 286
>gi|115460220|ref|NP_001053710.1| Os04g0591000 [Oryza sativa Japonica Group]
gi|38346724|emb|CAE04874.2| OSJNBa0086O06.22 [Oryza sativa Japonica Group]
gi|113565281|dbj|BAF15624.1| Os04g0591000 [Oryza sativa Japonica Group]
gi|215706340|dbj|BAG93196.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 291
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 101/172 (58%), Gaps = 2/172 (1%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALN 159
+ +L N+PW+ +I LF Q G V D+E+ + +G AFVTM + +EA AA+
Sbjct: 79 RRKLYVANIPWSFPAPEIEKLFAQCGAVKDVEVIKGKDGKKKGFAFVTMATAEEAAAAVE 138
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEG 219
L S + GRT++V ++K +K PP L+++NL ++ARA +++EFF
Sbjct: 139 KLNSLDVMGRTIRVEFSKSFRKPAPPPPPGTILERHKLYVSNLPWKARAPNMKEFFSK-- 196
Query: 220 WDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271
++ +SA+V+F +SAGYGFVSF +K+ AE A++ GK +M + L +
Sbjct: 197 FNPLSAKVVFDSPSGKSAGYGFVSFGTKEEAEAALTELDGKELMGRPVRLRW 248
>gi|116311029|emb|CAH67960.1| OSIGBa0142I02-OSIGBa0101B20.3 [Oryza sativa Indica Group]
Length = 291
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 101/172 (58%), Gaps = 2/172 (1%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALN 159
+ +L N+PW+ +I LF Q G V D+E+ + +G AFVTM + +EA AA+
Sbjct: 79 RRKLYVANIPWSFPAPEIEKLFAQCGAVKDVEVIKGKDGKKKGFAFVTMATAEEAAAAVE 138
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEG 219
L S + GRT++V ++K +K PP L+++NL ++ARA +++EFF
Sbjct: 139 KLNSLDVMGRTIRVEFSKSFRKPAPPPPPGTILERHKLYVSNLPWKARAPNMKEFFSK-- 196
Query: 220 WDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271
++ +SA+V+F +SAGYGFVSF +K+ AE A++ GK +M + L +
Sbjct: 197 FNPLSAKVVFDSPSGKSAGYGFVSFGTKEEAEAALTELDGKELMGRPVRLRW 248
>gi|116781814|gb|ABK22250.1| unknown [Picea sitchensis]
Length = 355
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 93/167 (55%), Gaps = 9/167 (5%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAALN 159
T+L N+P+ E + +F++ G V +E+ S R+RG AFVTM + +EA AA+
Sbjct: 167 TKLYVGNLPFDIDSEGLAKMFDESGVVEMVEVIYDRSSGRSRGFAFVTMSTVEEAEAAIK 226
Query: 160 NLESYEFEGRTLKVNYAKIKK-KNPFPPVQ-PKPFATF-----NLFIANLSFEARAKDLR 212
+E +GR+L+VN+ ++ + +N P + P F F +++ NL++ ++ LR
Sbjct: 227 KFNGFEIDGRSLRVNFPEVPRLQNGRSPARSPSNFGGFVDSPHKVYVGNLAWSVTSETLR 286
Query: 213 EFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
E +G +V+ A+VI RS G+GFVSF S+ E A+S G
Sbjct: 287 EALNGKG-NVLGAKVIQDRETGRSRGFGFVSFSSEAEVEAAVSEMDG 332
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVTMGSPDEATAALNNLESYE 165
N+ W+ T E +R G VL + + R+RG FV+ S E AA++ ++ E
Sbjct: 275 NLAWSVTSETLREALNGKGNVLGAKVIQDRETGRSRGFGFVSFSSEAEVEAAVSEMDGLE 334
Query: 166 FEGRTLKVNYAK 177
EGR+++VN AK
Sbjct: 335 VEGRSIRVNVAK 346
>gi|116793682|gb|ABK26841.1| unknown [Picea sitchensis]
Length = 347
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 93/167 (55%), Gaps = 9/167 (5%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAALN 159
T+L N+P+ E + +F++ G V +E+ S R+RG AFVTM + +EA AA+
Sbjct: 159 TKLYVGNLPFDIDSEGLAKMFDESGVVEMVEVIYDRSSGRSRGFAFVTMSTVEEAEAAIK 218
Query: 160 NLESYEFEGRTLKVNYAKIKK-KNPFPPVQ-PKPFATF-----NLFIANLSFEARAKDLR 212
+E +GR+L+VN+ ++ + +N P + P F F +++ NL++ ++ LR
Sbjct: 219 KFNGFEIDGRSLRVNFPEVPRLQNGRSPARSPSNFGGFVDSPHKVYVGNLAWSVTSETLR 278
Query: 213 EFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
E +G +V+ A+VI RS G+GFVSF S+ E A+S G
Sbjct: 279 EALNGKG-NVLGAKVIQDRETGRSRGFGFVSFSSEAEVEAAVSEMDG 324
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVTMGSPDEATAALNNLESYE 165
N+ W+ T E +R G VL + + R+RG FV+ S E AA++ ++ E
Sbjct: 267 NLAWSVTSETLREALNGKGNVLGAKVIQDRETGRSRGFGFVSFSSEAEVEAAVSEMDGLE 326
Query: 166 FEGRTLKVNYAKIK 179
EGR+++VN AK +
Sbjct: 327 VEGRSIRVNVAKSR 340
>gi|217073820|gb|ACJ85270.1| unknown [Medicago truncatula]
Length = 285
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 92/168 (54%), Gaps = 6/168 (3%)
Query: 89 VNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVT 147
+ E E ++T+L N+P++ + L E++G+ IE L ++RG AFVT
Sbjct: 101 IGGETVAEVDTRTKLYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDTGKSRGFAFVT 160
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEAR 207
M ++ A + NL+ EF GRTL+VN++ K P P+ P+ + LF+ NL++
Sbjct: 161 MSCVEDCNAVIQNLDGKEFMGRTLRVNFS--DKPKPKEPLYPE--TEYKLFVGNLAWTVT 216
Query: 208 AKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
++ L + F G VV A V+F +S GYGFVS+ +K +TA++
Sbjct: 217 SESLTQAFQEHG-TVVGARVLFDGETGKSRGYGFVSYATKSEMDTALA 263
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 4/87 (4%)
Query: 95 EEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE 153
E EY +L N+ WT T E + F++HGTV+ + + ++RG FV+ + E
Sbjct: 201 ETEY---KLFVGNLAWTVTSESLTQAFQEHGTVVGARVLFDGETGKSRGYGFVSYATKSE 257
Query: 154 ATAALNNLESYEFEGRTLKVNYAKIKK 180
AL +++ E EGRTL+V+ A+ K+
Sbjct: 258 MDTALAIMDNVELEGRTLRVSLAQGKR 284
>gi|356505441|ref|XP_003521499.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 314
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 97/174 (55%), Gaps = 12/174 (6%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDE 153
+ Y RL N+P++ T+ + LF + GTV +E+ M+ + +R+RG AFVTMG+ ++
Sbjct: 100 DSYDAGRLYVGNLPYSITNSALAELFGEAGTVASVEI-MYDRVTDRSRGFAFVTMGNVED 158
Query: 154 ATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI--------ANLSFE 205
A A+ + + GRT+KVN+ ++ K + K ++ F+ NL +
Sbjct: 159 AKEAIRMFDGSQVGGRTVKVNFPEVPKGGERLVMGSKIRNSYRGFVDSPHKIYAGNLGWG 218
Query: 206 ARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
++ LRE F +E V+SA+VI+ + RS G+GFVSF++ + A+ A+ G
Sbjct: 219 LTSQGLREAF-AEQPGVLSAKVIYERDSGRSRGFGFVSFETAESAQAALDIMNG 271
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALF-EQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
++ A N+ W T + +R F EQ G + + R+RG FV+ + + A AAL+
Sbjct: 209 KIYAGNLGWGLTSQGLREAFAEQPGVLSAKVIYERDSGRSRGFGFVSFETAESAQAALDI 268
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPVQ 188
+ E +GR L++N A+ + + P +Q
Sbjct: 269 MNGVEVQGRPLRLNLAEARAPSSPPVIQ 296
>gi|357439793|ref|XP_003590174.1| 31 kDa ribonucleoprotein [Medicago truncatula]
gi|355479222|gb|AES60425.1| 31 kDa ribonucleoprotein [Medicago truncatula]
Length = 387
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 92/168 (54%), Gaps = 6/168 (3%)
Query: 89 VNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVT 147
+ E E ++T+L N+P++ + L E++G+ IE L ++RG AFVT
Sbjct: 203 IGGETVAEVDTRTKLYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDTGKSRGFAFVT 262
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEAR 207
M ++ A + NL+ EF GRTL+VN++ K P P+ P+ + LF+ NL++
Sbjct: 263 MSCVEDCNAVIQNLDGKEFMGRTLRVNFS--DKPKPKEPLYPE--TEYKLFVGNLAWTVT 318
Query: 208 AKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
++ L + F G VV A V+F +S GYGFVS+ +K +TA++
Sbjct: 319 SESLTQAFQEHG-TVVGARVLFDGETGKSRGYGFVSYATKSEMDTALA 365
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 4/87 (4%)
Query: 95 EEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE 153
E EY +L N+ WT T E + F++HGTV+ + + ++RG FV+ + E
Sbjct: 303 ETEY---KLFVGNLAWTVTSESLTQAFQEHGTVVGARVLFDGETGKSRGYGFVSYATKSE 359
Query: 154 ATAALNNLESYEFEGRTLKVNYAKIKK 180
AL +++ E EGRTL+V+ A+ K+
Sbjct: 360 MDTALAIMDNVELEGRTLRVSLAQGKR 386
>gi|326510421|dbj|BAJ87427.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326510771|dbj|BAJ91733.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 278
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 89/177 (50%), Gaps = 13/177 (7%)
Query: 95 EEEYSKT-RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPD 152
E EYS+ ++ N+P+T + LFEQ G+V +E+ R+RG FVTMGS +
Sbjct: 80 EAEYSEDLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVE 139
Query: 153 EATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKP---------FATFN-LFIANL 202
E AA+ Y F+GR L+VN ++ F P P+ F + N L++ NL
Sbjct: 140 EVAAAVEQFNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMGGGGGGGSFDSANKLYVGNL 199
Query: 203 SFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
S+ L F SE V+ A+VI+ + RS G+GFV++ S AIS G
Sbjct: 200 SWGVDNSTLENLF-SEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDG 255
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAA 157
S +L N+ W + + LF + G VLD ++ R+RG FVT GS DE A
Sbjct: 190 SANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNA 249
Query: 158 LNNLESYEFEGRTLKVNYAKIKKK 181
++NL+ + +GR ++V A+ K +
Sbjct: 250 ISNLDGVDLDGRQIRVTVAESKPR 273
>gi|225433269|ref|XP_002285469.1| PREDICTED: uncharacterized protein LOC100261382 [Vitis vinifera]
Length = 751
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 89/169 (52%), Gaps = 6/169 (3%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVTMGS 150
E+ E T+L N+P++ + + + +G+ +E L R+RG AFVTM S
Sbjct: 102 EEGAESPVNTKLYFGNLPYSCDSAQLAGIIQNYGSPELVEVLYNRDTGRSRGFAFVTMSS 161
Query: 151 PDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKD 210
++ A + NL+ E+ GRTL+VN++ P P + P + LF+ NLS+ ++
Sbjct: 162 VEDCNAVIENLDGSEYGGRTLRVNFS----DKPKPKLPLYPETEYKLFVGNLSWSVTSES 217
Query: 211 LREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
L + F G +V+ A V++ RS GYGFV + +K +TA+ + G
Sbjct: 218 LNQVFQEYG-NVIGARVLYDGETGRSRGYGFVCYSTKAEMDTALESLNG 265
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 95 EEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE 153
E EY +L N+ W+ T E + +F+++G V+ + + R+RG FV + E
Sbjct: 199 ETEY---KLFVGNLSWSVTSESLNQVFQEYGNVIGARVLYDGETGRSRGYGFVCYSTKAE 255
Query: 154 ATAALNNLESYEFEGRTLKVN 174
AL +L E EGR ++V
Sbjct: 256 MDTALESLNGVELEGRAIRVG 276
>gi|356572637|ref|XP_003554474.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 317
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 92/167 (55%), Gaps = 10/167 (5%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNN 160
RL N+P++ T+ ++ LF + GTV +E+ +R+RG AFVTMGS ++A A+
Sbjct: 109 RLYVGNLPYSITNSELGELFGEAGTVASVEIVYDRVTDRSRGFAFVTMGSVEDAKEAIRM 168
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI--------ANLSFEARAKDLR 212
+ + GRT+KVN+ ++ K + K ++ F+ NL + ++ LR
Sbjct: 169 FDGSQVGGRTVKVNFPEVPKGGERLVMGSKILNSYRGFVDSPHKIYAGNLGWGLTSQGLR 228
Query: 213 EFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
E F +E V+SA+VI+ + RS G+GFVSF++ + A A+ G
Sbjct: 229 EAF-AEQPGVLSAKVIYERDSGRSRGFGFVSFETAESARAALDIMNG 274
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALF-EQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
++ A N+ W T + +R F EQ G + + R+RG FV+ + + A AAL+
Sbjct: 212 KIYAGNLGWGLTSQGLREAFAEQPGVLSAKVIYERDSGRSRGFGFVSFETAESARAALDI 271
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPVQ 188
+ E +GR L++N A+ + + P +Q
Sbjct: 272 MNGVEVQGRPLRLNLAEARTPSSPPVIQ 299
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
L++ NL + +L E F E V S E+++ RS G+ FV+ S + A+ AI
Sbjct: 110 LYVGNLPYSITNSELGELF-GEAGTVASVEIVYDRVTDRSRGFAFVTMGSVEDAKEAIRM 168
Query: 257 FQGKVIMCLVIALSY 271
F G + + +++
Sbjct: 169 FDGSQVGGRTVKVNF 183
>gi|224107511|ref|XP_002314506.1| predicted protein [Populus trichocarpa]
gi|222863546|gb|EEF00677.1| predicted protein [Populus trichocarpa]
Length = 279
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 88/160 (55%), Gaps = 6/160 (3%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALN 159
T+L N+P+ + + +++G+ +E+ H + R+RG AFVTM S ++ A +
Sbjct: 107 TKLYFGNLPYNVDSAQLAGIIQEYGSPEMVEVLYHRETGRSRGFAFVTMSSIEDCNAVIE 166
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEG 219
NL+ ++ GR L+VN++ NP P P + LF+ NLS+ A ++ L + F G
Sbjct: 167 NLDESQYMGRILRVNFS----DNPKPKEPLYPETEYKLFVGNLSWSATSESLTQAFQEYG 222
Query: 220 WDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+VV A V++ +S GYGFV + +K +TA+ + G
Sbjct: 223 -NVVGARVLYDGETGKSRGYGFVCYSTKAEMQTALVSLDG 261
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Query: 95 EEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE 153
E EY +L N+ W++T E + F+++G V+ + + ++RG FV + E
Sbjct: 195 ETEY---KLFVGNLSWSATSESLTQAFQEYGNVVGARVLYDGETGKSRGYGFVCYSTKAE 251
Query: 154 ATAALNNLESYEFEGRTLKVNYAKIKK 180
AL +L+ E EGR L+V+ A+ +K
Sbjct: 252 MQTALVSLDGVELEGRALRVSLAEGRK 278
>gi|115478330|ref|NP_001062760.1| Os09g0279500 [Oryza sativa Japonica Group]
gi|49387841|dbj|BAD26506.1| putative plastid-specific ribosomal protein 2 precursor [Oryza
sativa Japonica Group]
gi|49388840|dbj|BAD26030.1| putative plastid-specific ribosomal protein 2 precursor [Oryza
sativa Japonica Group]
gi|113630993|dbj|BAF24674.1| Os09g0279500 [Oryza sativa Japonica Group]
gi|215695254|dbj|BAG90445.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737768|dbj|BAG96898.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222641205|gb|EEE69337.1| hypothetical protein OsJ_28655 [Oryza sativa Japonica Group]
Length = 245
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 95/173 (54%), Gaps = 16/173 (9%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDE 153
EE + +L N+P T T++++ A+F HGTV E+ M K R+R FVTM +P+E
Sbjct: 65 EEVAARKLYVGNIPRTVTNDELAAMFADHGTVERAEV-MFDKYTGRSRRFGFVTMSTPEE 123
Query: 154 ATAALNNLESYEFEGRTLKVNYAK-----IKKKNPFPPVQPKPF---ATFNLFIANLSFE 205
A AA+ +L E GR +KVN + I + P +P+P + + +++ NL+
Sbjct: 124 ANAAIESLNETEVGGRKIKVNVTESFLPNIDRSAP----EPEPVFVDSQYKVYVGNLAKS 179
Query: 206 ARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ 258
+ L+ FF SE +V+SA V +S GYGFV+F S++ + A+S F
Sbjct: 180 VTTEMLKNFF-SEKGEVLSATVSRIPGTAKSKGYGFVTFSSEEEVQAAVSTFN 231
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELS-MHSKNRNRGLAFVTMGSPDEATAA 157
S+ ++ N+ + T E ++ F + G VL +S + +++G FVT S +E AA
Sbjct: 167 SQYKVYVGNLAKSVTTEMLKNFFSEKGEVLSATVSRIPGTAKSKGYGFVTFSSEEEVQAA 226
Query: 158 LNNLESYEFEGRTLKVNYA 176
++ + E EG+ ++VN A
Sbjct: 227 VSTFNNAELEGQPIRVNKA 245
>gi|226497258|ref|NP_001140274.1| uncharacterized protein LOC100272318 [Zea mays]
gi|194698792|gb|ACF83480.1| unknown [Zea mays]
gi|414883568|tpg|DAA59582.1| TPA: ribonucleoprotein [Zea mays]
Length = 341
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 91/175 (52%), Gaps = 8/175 (4%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAALN 159
RL N+P+T T E++ +F + G V D ++ ++ K NR+RG AFVTM + +EA A+
Sbjct: 113 RLFVGNLPYTYTSEELAQVFSEAGRVDDAQI-IYDKVTNRSRGFAFVTMATAEEAAKAIQ 171
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPV----QPKPFATFNLFIANLSFEARAKDLREFF 215
+ GRT +VNY ++ + V + + T+ ++ NL + RA LR F
Sbjct: 172 MFDGALLGGRTARVNYPEVPRGGERRTVTMSGRRRDDGTYKIYAGNLGWGVRADTLRNVF 231
Query: 216 ISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALS 270
++ A VIF RS G+GFVSF + + A+ A+ + G + + LS
Sbjct: 232 EGRAG-LLDARVIFERETGRSRGFGFVSFSTAEDAQAALESLDGVELEGRSLRLS 285
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 54/102 (52%), Gaps = 5/102 (4%)
Query: 89 VNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVT 147
V R + ++ A N+ W + +R +FE +LD + + R+RG FV+
Sbjct: 199 VTMSGRRRDDGTYKIYAGNLGWGVRADTLRNVFEGRAGLLDARVIFERETGRSRGFGFVS 258
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQP 189
+ ++A AAL +L+ E EGR+L+++ A ++NP PP P
Sbjct: 259 FSTAEDAQAALESLDGVELEGRSLRLSLA---EQNP-PPGSP 296
>gi|147769830|emb|CAN61277.1| hypothetical protein VITISV_002607 [Vitis vinifera]
Length = 454
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 94/167 (56%), Gaps = 10/167 (5%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALN 159
+RL N+P++ T + +F + G+V+ +E+ +R+RG AFVTMGS EA A+
Sbjct: 246 SRLYVGNLPYSMTSSQLGXVFNEAGSVISVEIVYDRVTDRSRGFAFVTMGSVQEAKEAIR 305
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI--------ANLSFEARAKDL 211
+ + GRT+KVN+ ++ + + PK +++ F+ NLS+ ++ L
Sbjct: 306 MFDGSQVGGRTVKVNFPEVPRGGERAVMGPKIRSSYRGFVDSPYKIYAGNLSWRLTSEGL 365
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ 258
R+ F ++ ++ A+VI+ RS G+GF+SF S + AE+A++A
Sbjct: 366 RDAF-ADXPGLLGAKVIYERESGRSRGFGFLSFASAENAESALNAMB 411
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
++ A N+ W T E +R F +L ++ + R+RG F++ S + A +ALN
Sbjct: 350 KIYAGNLSWRLTSEGLRDAFADXPGLLGAKVIYERESGRSRGFGFLSFASAENAESALNA 409
Query: 161 LESYEFEGRTLKVNYAKIK 179
++ E EGR L++N A ++
Sbjct: 410 MBEVEVEGRPLRLNLAAVR 428
Score = 37.7 bits (86), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
L++ NL + + L F +E V+S E+++ RS G+ FV+ S + A+ AI
Sbjct: 248 LYVGNLPYSMTSSQLGXVF-NEAGSVISVEIVYDRVTDRSRGFAFVTMGSVQEAKEAIRM 306
Query: 257 FQGKVIMCLVIALSY 271
F G + + +++
Sbjct: 307 FDGSQVGGRTVKVNF 321
>gi|195611722|gb|ACG27691.1| ribonucleoprotein [Zea mays]
Length = 341
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 91/175 (52%), Gaps = 8/175 (4%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAALN 159
RL N+P+T T E++ +F + G V D ++ ++ K NR+RG AFVTM + +EA A+
Sbjct: 113 RLFVGNLPYTYTSEELAQVFSEAGRVDDAQI-IYDKVTNRSRGFAFVTMATAEEAAKAIQ 171
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPV----QPKPFATFNLFIANLSFEARAKDLREFF 215
+ GRT +VNY ++ + V + + T+ ++ NL + RA LR F
Sbjct: 172 MFDGALLGGRTARVNYPEVPRGGERRTVTMSGRRRDDGTYKIYAGNLGWGVRADTLRNVF 231
Query: 216 ISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALS 270
++ A VIF RS G+GFVSF + + A+ A+ + G + + LS
Sbjct: 232 EGRAG-LLDARVIFERETGRSRGFGFVSFSTAEDAQAALESLDGVELEGRPLRLS 285
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 5/102 (4%)
Query: 89 VNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVT 147
V R + ++ A N+ W + +R +FE +LD + + R+RG FV+
Sbjct: 199 VTMSGRRRDDGTYKIYAGNLGWGVRADTLRNVFEGRAGLLDARVIFERETGRSRGFGFVS 258
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQP 189
+ ++A AAL +L+ E EGR L+++ A ++NP PP P
Sbjct: 259 FSTAEDAQAALESLDGVELEGRPLRLSLA---EQNP-PPGSP 296
>gi|17064758|gb|AAL32533.1| ubiquitin / ribosomal protein CEP52 [Arabidopsis thaliana]
Length = 329
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 97/170 (57%), Gaps = 12/170 (7%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAA 157
+ RL N+P+T T ++ +F + GTV+D+++ ++ K +R+RG FVTMGS +EA A
Sbjct: 115 EGRLYVGNLPYTITSSELSQIFGEAGTVVDVQI-VYDKVTDRSRGFGFVTMGSIEEAKGA 173
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPF--------ATFNLFIANLSFEARAK 209
+ S + GRT+KVN+ ++ + ++ K + ++ NL ++ ++
Sbjct: 174 MQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWDLTSQ 233
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
L++ F + V+ A+VI+ N RS G+GF+SF+S + ++A++ G
Sbjct: 234 GLKDAF-GDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNG 282
Score = 44.7 bits (104), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 6/90 (6%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKN--RNRGLAFVTMGSPDEATAALN 159
++ A N+ W T + ++ F VL ++ ++ +N R+RG F++ S + +AL
Sbjct: 220 KVYAGNLGWDLTSQGLKDAFGDQPGVLGAKV-IYERNTGRSRGFGFISFESAENVQSALA 278
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQP 189
+ E EGR L++N A ++K P V P
Sbjct: 279 TMNGVEVEGRALRLNLASEREK---PTVSP 305
>gi|225463276|ref|XP_002264127.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Vitis
vinifera]
Length = 311
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 94/167 (56%), Gaps = 10/167 (5%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALN 159
+RL N+P++ T + +F + G+V+ +E+ +R+RG AFVTMGS EA A+
Sbjct: 103 SRLYVGNLPYSMTSSQLGDVFNEAGSVISVEIVYDRVTDRSRGFAFVTMGSVQEAKEAIR 162
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI--------ANLSFEARAKDL 211
+ + GRT+KVN+ ++ + + PK +++ F+ NLS+ ++ L
Sbjct: 163 MFDGSQVGGRTVKVNFPEVPRGGERAVMGPKIRSSYRGFVDSPYKIYAGNLSWRLTSEGL 222
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ 258
R+ F ++ ++ A+VI+ RS G+GF+SF S + AE+A++A
Sbjct: 223 RDAF-ADHPGLLGAKVIYERESGRSRGFGFLSFASAENAESALNAMN 268
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
++ A N+ W T E +R F H +L ++ + R+RG F++ S + A +ALN
Sbjct: 207 KIYAGNLSWRLTSEGLRDAFADHPGLLGAKVIYERESGRSRGFGFLSFASAENAESALNA 266
Query: 161 LESYEFEGRTLKVNYAKIK 179
+ E EGR L++N A ++
Sbjct: 267 MNEVEVEGRPLRLNLAAVR 285
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
L++ NL + + L + F +E V+S E+++ RS G+ FV+ S + A+ AI
Sbjct: 105 LYVGNLPYSMTSSQLGDVF-NEAGSVISVEIVYDRVTDRSRGFAFVTMGSVQEAKEAIRM 163
Query: 257 FQGKVIMCLVIALSY 271
F G + + +++
Sbjct: 164 FDGSQVGGRTVKVNF 178
>gi|558629|emb|CAA57551.1| chloroplast RNA binding protein [Phaseolus vulgaris]
Length = 287
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 90/170 (52%), Gaps = 10/170 (5%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVTMGS 150
+ +E ++ T+L N+P++ + L + +G+ IE L ++RG AFVTM
Sbjct: 104 QDSDESFASTKLYFGNLPYSVDSAKLAGLIQDYGSAELIEVLYDRDTGKSRGFAFVTMSC 163
Query: 151 PDEATAALNNLESYEFEGRTLKVNYA-KIKKKNP-FPPVQPKPFATFNLFIANLSFEARA 208
++ A + NL+ E+ GRTL+VN++ K K K P +P + K LF+ NLS+
Sbjct: 164 IEDCNAVIENLDGKEYLGRTLRVNFSNKPKAKEPLYPETEHK------LFVGNLSWSVTN 217
Query: 209 KDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ 258
+ L + F G VV A V++ RS GYGFV F +K+ E A+ A
Sbjct: 218 EILTQAFQEYG-TVVGARVLYDGETGRSRGYGFVCFSTKEEMEAALGALN 266
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
+L N+ W+ T+E + F+++GTV+ + + R+RG FV + +E AAL
Sbjct: 205 KLFVGNLSWSVTNEILTQAFQEYGTVVGARVLYDGETGRSRGYGFVCFSTKEEMEAALGA 264
Query: 161 LESYEFEGRTLKVNYAKIKK 180
L E EGR ++V+ A+ K+
Sbjct: 265 LNDVELEGRAMRVSLAEGKR 284
>gi|2104687|emb|CAA66479.1| RNA- or ssDNA-binding protein [Vicia faba var. minor]
Length = 289
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 85/161 (52%), Gaps = 6/161 (3%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVTMGSPDEA 154
EE ++T+L N+P++ + L E++G+ +E L ++RG AF TM ++
Sbjct: 112 EEDTRTKLYFGNLPYSVDSAKLAGLIEEYGSAELVEVLYDRDTGKSRGFAFATMTCVEDC 171
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
A + NL+ EF GRTL+VN++ P P + LFI NLS++ ++ L E
Sbjct: 172 KAVIENLDGKEFMGRTLRVNFS----DKPKAKESLYPETEYKLFIGNLSWKVTSEILTEA 227
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
F G VV A VI+ S GYGFVS+ +K E A++
Sbjct: 228 FQEHG-TVVGARVIYDGETGNSRGYGFVSYANKSEMEAALT 267
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 95 EEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRN-RGLAFVTMGSPDE 153
E EY +L N+ W T E + F++HGTV+ + + N RG FV+ + E
Sbjct: 205 ETEY---KLFIGNLSWKVTSEILTEAFQEHGTVVGARVIYDGETGNSRGYGFVSYANKSE 261
Query: 154 ATAALNNLESYEFEGRTLKVNYAKIKK 180
AAL + E EGR L+V+ A+ K+
Sbjct: 262 MEAALTIMNDVELEGRALRVSLAQGKR 288
>gi|20009|emb|CAA43429.1| ribonucleoprotein [Nicotiana tabacum]
Length = 292
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 94/163 (57%), Gaps = 12/163 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNN 160
RL N+P++ T + +F + GTV ++E+ +R+RG AFVTMGS +EA A+
Sbjct: 104 RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRL 163
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF--------NLFIANLSFEARAKDLR 212
+ + GRT+KVN+ ++ + + K +T+ L++ANLS+ ++ LR
Sbjct: 164 FDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGLR 223
Query: 213 EFFISE-GWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAI 254
+ F + G+ +SA+VI+ + RS G+GF++F S + ++A+
Sbjct: 224 DAFADQPGF--MSAKVIYDRSSGRSRGFGFITFSSAEAMKSAL 264
Score = 38.1 bits (87), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
L++ NL F + L E F +E V + E+++ RS G+ FV+ S + A+ AI
Sbjct: 105 LYVGNLPFSMTSSQLSEIF-AEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRL 163
Query: 257 FQGKVIMCLVIALSY 271
F G + + +++
Sbjct: 164 FDGSQVGGRTVKVNF 178
>gi|356537206|ref|XP_003537120.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 298
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 89/165 (53%), Gaps = 8/165 (4%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALN 159
+RL N+P++ + F + G V+ +E+ +R+RG AFVTMGS ++A A+
Sbjct: 88 SRLFVGNLPYSLLSSQLAQRFGEAGNVVSVEIVYDDIMDRSRGFAFVTMGSMEDAERAIR 147
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF-----NLFIANLSFEARAKDLREF 214
+ E GR +KVN+ I K+ V + F ++ NL + ++DLR+
Sbjct: 148 MFDGSEIGGRIMKVNFTAIPKRGK-RLVMGSNYRGFVDSPHKIYAGNLGWGLTSQDLRDA 206
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
F +E +SA+VI+ N RS GYGFVSF++ + E A+++ G
Sbjct: 207 F-AEQPGFLSAKVIYERNSGRSRGYGFVSFETAEDVEAALNSMNG 250
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALF-EQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
++ A N+ W T +D+R F EQ G + + + R+RG FV+ + ++ AALN+
Sbjct: 188 KIYAGNLGWGLTSQDLRDAFAEQPGFLSAKVIYERNSGRSRGYGFVSFETAEDVEAALNS 247
Query: 161 LESYEFEGRTLKVNYAKIKK 180
+ E +GR L++N A K
Sbjct: 248 MNGVEVQGRPLRLNLATDKN 267
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 6/89 (6%)
Query: 188 QPKPFATFN-----LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFV 242
+P+P A+ LF+ NL + + L + F E +VVS E+++ D RS G+ FV
Sbjct: 76 KPEPNASHTNQSSRLFVGNLPYSLLSSQLAQRF-GEAGNVVSVEIVYDDIMDRSRGFAFV 134
Query: 243 SFKSKKVAETAISAFQGKVIMCLVIALSY 271
+ S + AE AI F G I ++ +++
Sbjct: 135 TMGSMEDAERAIRMFDGSEIGGRIMKVNF 163
>gi|311952|emb|CAA41253.1| 33 kd chloroplast ribonucleoprotein [Nicotiana sylvestris]
Length = 319
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 94/163 (57%), Gaps = 12/163 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNN 160
RL N+P++ T + +F + GTV ++E+ +R+RG AFVTMGS +EA A+
Sbjct: 110 RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRL 169
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF--------NLFIANLSFEARAKDLR 212
+ + GRT+KVN+ ++ + + K +T+ L++ANLS+ ++ LR
Sbjct: 170 FDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGLR 229
Query: 213 EFFISE-GWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAI 254
+ F + G+ +SA+VI+ + RS G+GF++F S + ++A+
Sbjct: 230 DAFADQPGF--MSAKVIYDRSSGRSRGFGFITFSSAEAMKSAL 270
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 4/106 (3%)
Query: 102 RLVAQNVPWTSTHEDIRALF-EQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
+L N+ W T + +R F +Q G + + S R+RG F+T S + +AL+
Sbjct: 213 KLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMKSALDT 272
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPV---QPKPFATFNLFIANLS 203
+ E EGR L++N A K P V P+ + N +++LS
Sbjct: 273 MNEVELEGRPLRLNVAGQKAPLSSPSVVETSPENDSENNELLSSLS 318
Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
L++ NL F + L E F +E V + E+++ RS G+ FV+ S + A+ AI
Sbjct: 111 LYVGNLPFSMTSSQLSEIF-AEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRL 169
Query: 257 FQGKVIMCLVIALSY 271
F G + + +++
Sbjct: 170 FDGSQVGGRTVKVNF 184
>gi|326523691|dbj|BAJ93016.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 244
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 93/169 (55%), Gaps = 8/169 (4%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDE 153
EE + +L N+P T T++++ A+F HGTV+ E+ M+ K R+R FVTM + +E
Sbjct: 64 EELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEV-MYDKYSGRSRRFGFVTMSTAEE 122
Query: 154 ATAALNNLESYEFEGRTLKVNYAK--IKKKNPFPPVQPKPF--ATFNLFIANLSFEARAK 209
AA+ +L E GR +KVN + + + P F + + +++ NL+ + +
Sbjct: 123 VAAAIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTE 182
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ 258
L+ FF SE +V+SA V +S GYGFV+F S++ E A+S F
Sbjct: 183 VLKNFF-SEKGEVLSATVSRIPGTPKSKGYGFVTFSSEEEVEAAVSTFN 230
Score = 41.2 bits (95), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELS-MHSKNRNRGLAFVTMGSPDEATAA 157
S+ ++ N+ T E ++ F + G VL +S + +++G FVT S +E AA
Sbjct: 166 SQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGFVTFSSEEEVEAA 225
Query: 158 LNNLESYEFEGRTLKVNYA 176
++ + E EG+T++VN A
Sbjct: 226 VSTFNNTELEGQTIRVNRA 244
>gi|297733663|emb|CBI14910.3| unnamed protein product [Vitis vinifera]
Length = 306
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 91/173 (52%), Gaps = 5/173 (2%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAAL 158
+ ++ N+P+ E + LFEQ G V E+ + + +R+RG FV+M + +EA A+
Sbjct: 126 EAKVFVGNLPYDVDSERLARLFEQAGVVEIAEVIYNRETDRSRGFGFVSMSTVEEAEKAV 185
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA-TFNLFIANLSFEARAKDLREFFIS 217
+ YE +GR L VN A + P P P+ F F +++ NL ++ + L + F S
Sbjct: 186 DMFHRYELDGRLLTVNKAAPRGSQPERP--PRVFEPAFRMYVGNLPWDVDSARLEQVF-S 242
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALS 270
E VV A V+F RS G+GFV+ S+ E AI+A G+ + I ++
Sbjct: 243 EHGKVVEARVVFDRETGRSRGFGFVTMSSQTELEDAIAATDGQTLDGRTIRVN 295
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
R+ N+PW + +F +HG V++ + + R+RG FVTM S E A+
Sbjct: 222 RMYVGNLPWDVDSARLEQVFSEHGKVVEARVVFDRETGRSRGFGFVTMSSQTELEDAIAA 281
Query: 161 LESYEFEGRTLKVNYAKIKKK 181
+ +GRT++VN A+ + +
Sbjct: 282 TDGQTLDGRTIRVNVAEERPR 302
>gi|168054274|ref|XP_001779557.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669038|gb|EDQ55633.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 213
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 89/175 (50%), Gaps = 13/175 (7%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDE 153
EE +++ N+PWT + + QHGTV +E+ ++ K R+RG AFVTM S D+
Sbjct: 18 EEQLGSKVYVGNLPWTCDSAQLAEICSQHGTVDVVEV-IYDKLSGRSRGFAFVTMASHDD 76
Query: 154 ATAALNNLESYEFEGRTLKVNYAKIKKKNPF--------PPVQPKPFATFN-LFIANLSF 204
A A +N L+ + GR LKVN+ + +K P P +P N LF+ N+ +
Sbjct: 77 AQALINALDGSDMGGRALKVNFPQSQKDKPRFEKSEARPPTADRRPRDDPNKLFVGNIPW 136
Query: 205 EARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ F G VV A++++ + RS G+GFV+ + A+TA+ G
Sbjct: 137 GCDEAAMTSLFSPYG-SVVDAKIVYDRDSGRSRGFGFVTMEKVGDAQTAMENLDG 190
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 91 TEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMG 149
T R +L N+PW + +LF +G+V+D ++ R+RG FVTM
Sbjct: 117 TADRRPRDDPNKLFVGNIPWGCDEAAMTSLFSPYGSVVDAKIVYDRDSGRSRGFGFVTME 176
Query: 150 SPDEATAALNNLESYEFEGRTLKVNYAKIK 179
+A A+ NL+ E +GR L+VN+A K
Sbjct: 177 KVGDAQTAMENLDGTELDGRELRVNFAGEK 206
>gi|225456840|ref|XP_002278832.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic [Vitis vinifera]
Length = 327
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 91/173 (52%), Gaps = 5/173 (2%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAAL 158
+ ++ N+P+ E + LFEQ G V E+ + + +R+RG FV+M + +EA A+
Sbjct: 147 EAKVFVGNLPYDVDSERLARLFEQAGVVEIAEVIYNRETDRSRGFGFVSMSTVEEAEKAV 206
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA-TFNLFIANLSFEARAKDLREFFIS 217
+ YE +GR L VN A + P P P+ F F +++ NL ++ + L + F S
Sbjct: 207 DMFHRYELDGRLLTVNKAAPRGSQPERP--PRVFEPAFRMYVGNLPWDVDSARLEQVF-S 263
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALS 270
E VV A V+F RS G+GFV+ S+ E AI+A G+ + I ++
Sbjct: 264 EHGKVVEARVVFDRETGRSRGFGFVTMSSQTELEDAIAATDGQTLDGRTIRVN 316
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
R+ N+PW + +F +HG V++ + + R+RG FVTM S E A+
Sbjct: 243 RMYVGNLPWDVDSARLEQVFSEHGKVVEARVVFDRETGRSRGFGFVTMSSQTELEDAIAA 302
Query: 161 LESYEFEGRTLKVNYAKIKKK 181
+ +GRT++VN A+ + +
Sbjct: 303 TDGQTLDGRTIRVNVAEERPR 323
>gi|116786296|gb|ABK24055.1| unknown [Picea sitchensis]
Length = 299
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 85/167 (50%), Gaps = 10/167 (5%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
++ N+PW+ ++ LF+ G V +E+ + R+RG AFVTM + +A A+
Sbjct: 114 KVFVGNLPWSVDSAELAELFKDSGDVTMVEVIYDRQTGRSRGFAFVTMATQADADEAVEK 173
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPP----VQPKPFATFN----LFIANLSFEARAKDLR 212
YE++GRTL+VN K+ F P KP +N +F+ NL + A L
Sbjct: 174 FNGYEYQGRTLRVNSGPPPPKDSFAPRGGFRNEKPSGNYNSANRVFVGNLPWGADDLSLE 233
Query: 213 EFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ F G V+ A+V++ RS G+GFV+ S + E AIS+ G
Sbjct: 234 QLFSDHG-KVMEAKVVYDRETGRSRGFGFVTLSSPQEIEEAISSLDG 279
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAA 157
S R+ N+PW + + LF HG V++ ++ + R+RG FVT+ SP E A
Sbjct: 214 SANRVFVGNLPWGADDLSLEQLFSDHGKVMEAKVVYDRETGRSRGFGFVTLSSPQEIEEA 273
Query: 158 LNNLESYEFEGRTLKVNYAKIK 179
+++L+ + +GR +KV A+ K
Sbjct: 274 ISSLDGSDMDGRQIKVTLAETK 295
>gi|449432502|ref|XP_004134038.1| PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
gi|449487476|ref|XP_004157645.1| PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
Length = 276
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 94/173 (54%), Gaps = 13/173 (7%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKN--RNRGLAFVTMGSPDEA 154
E T+L N+P++ + A+ + +G IE+ ++ +N ++RG AFVTM S ++
Sbjct: 98 ESGSTKLYFGNLPYSVDSSQLAAIVQDYGIAELIEV-LYDRNTGKSRGFAFVTMSSIEDC 156
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
+ NL+ + GR L+VN++ K P P+ P+ + LF+ NLS+ ++ L +
Sbjct: 157 NKVIENLDGSAYMGRILRVNFSD--KPKPKEPLYPE--TEYKLFVGNLSWSVTSEILTQA 212
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA-----FQGKVI 262
F G +VV A VI+ +S GYGFVS+ +K ETA+ +G+VI
Sbjct: 213 FQEYG-NVVGARVIYDGETGKSRGYGFVSYSTKSEMETALETINELELEGRVI 264
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 95 EEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE 153
E EY +L N+ W+ T E + F+++G V+ + + ++RG FV+ + E
Sbjct: 190 ETEY---KLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYDGETGKSRGYGFVSYSTKSE 246
Query: 154 ATAALNNLESYEFEGRTLKVNYAKIKK 180
AL + E EGR ++V+ A+ K+
Sbjct: 247 METALETINELELEGRVIRVSLAEGKQ 273
>gi|147838354|emb|CAN61133.1| hypothetical protein VITISV_039575 [Vitis vinifera]
Length = 1122
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 88/165 (53%), Gaps = 5/165 (3%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAAL 158
+ ++ N+P+ E + LFEQ G V E+ + + +R+RG FV+M + +EA A+
Sbjct: 942 EAKVFVGNLPYDVDSERLARLFEQAGVVEIAEVIYNRETDRSRGFGFVSMSTVEEAEKAV 1001
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA-TFNLFIANLSFEARAKDLREFFIS 217
+ YE +GR L VN A + P P P+ F F +++ NL ++ + L + F S
Sbjct: 1002 DMFHRYELDGRLLTVNKAAPRGSQPERP--PRVFEPAFRMYVGNLPWDVDSARLEQVF-S 1058
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
E VV A V+F RS G+GFV+ S+ E AI+A G+ +
Sbjct: 1059 EHGKVVEARVVFDRETGRSRGFGFVTMSSQTELEDAIAATDGQTL 1103
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
R+ N+PW + +F +HG V++ + + R+RG FVTM S E A+
Sbjct: 1038 RMYVGNLPWDVDSARLEQVFSEHGKVVEARVVFDRETGRSRGFGFVTMSSQTELEDAIAA 1097
Query: 161 LESYEFEGRTLKVNYAK 177
+ +GRT++VN A+
Sbjct: 1098 TDGQTLDGRTIRVNVAE 1114
>gi|15231200|ref|NP_190806.1| chloroplast RNA-binding protein 33 [Arabidopsis thaliana]
gi|681910|dbj|BAA06522.1| RNA-binding protein cp33 [Arabidopsis thaliana]
gi|4886289|emb|CAB43448.1| RNA-binding protein cp33 precursor [Arabidopsis thaliana]
gi|14517544|gb|AAK62662.1| AT3g52380/F22O6_240 [Arabidopsis thaliana]
gi|18700226|gb|AAL77723.1| AT3g52380/F22O6_240 [Arabidopsis thaliana]
gi|21553418|gb|AAM62511.1| RNA-binding protein cp33 [Arabidopsis thaliana]
gi|332645419|gb|AEE78940.1| chloroplast RNA-binding protein 33 [Arabidopsis thaliana]
Length = 329
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 96/170 (56%), Gaps = 12/170 (7%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAA 157
+ RL N+P+T T ++ +F + GTV+D+++ ++ K +R+RG FVTMGS +EA A
Sbjct: 115 EGRLYVGNLPYTITSSELSQIFGEAGTVVDVQI-VYDKVTDRSRGFGFVTMGSIEEAKEA 173
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPF--------ATFNLFIANLSFEARAK 209
+ S + GRT+KVN+ ++ + ++ K + ++ NL + ++
Sbjct: 174 MQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQ 233
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
L++ F + V+ A+VI+ N RS G+GF+SF+S + ++A++ G
Sbjct: 234 GLKDAF-GDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNG 282
Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 6/90 (6%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKN--RNRGLAFVTMGSPDEATAALN 159
++ A N+ W T + ++ F VL ++ ++ +N R+RG F++ S + +AL
Sbjct: 220 KVYAGNLGWNLTSQGLKDAFGDQPGVLGAKV-IYERNTGRSRGFGFISFESAENVQSALA 278
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQP 189
+ E EGR L++N A ++K P V P
Sbjct: 279 TMNGVEVEGRALRLNLASEREK---PTVSP 305
>gi|449501439|ref|XP_004161367.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like, partial
[Cucumis sativus]
Length = 324
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 91/178 (51%), Gaps = 5/178 (2%)
Query: 95 EEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE 153
EE +L N+P+ E + LFE+ GTV E+ + + +R+RG FVTM + +E
Sbjct: 140 EEPNEDAKLFVGNLPYDIDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEE 199
Query: 154 ATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA-TFNLFIANLSFEARAKDLR 212
A A++ Y+ GR L VN K + +P+PF TF +++ NL ++ L
Sbjct: 200 AEKAVDTFNRYDLSGRLLTVN--KAAPRGSRQEREPRPFQPTFRIYVGNLPWDVDNGRLE 257
Query: 213 EFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALS 270
+ F SE VV A V++ + RS G+GFV+ + AI+A G+ + I ++
Sbjct: 258 QLF-SEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMNDAIAALDGQSLDGRAIRVN 314
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVTMGSPDEATAALNN 160
R+ N+PW + + LF +HG V+D L R+RG FVTM A+
Sbjct: 241 RIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMNDAIAA 300
Query: 161 LESYEFEGRTLKVNYAKIKKKNPF 184
L+ +GR ++VN A+ + + F
Sbjct: 301 LDGQSLDGRAIRVNVAEERPRRNF 324
>gi|133249|sp|P19684.1|ROC5_NICSY RecName: Full=33 kDa ribonucleoprotein, chloroplastic; Flags:
Precursor
gi|100390|pir||S12111 ribonucleoprotein, 33K, precursor - common tobacco
gi|20005|emb|CAA37879.1| unnamed protein product [Nicotiana tabacum]
Length = 324
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 93/163 (57%), Gaps = 12/163 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNN 160
RL N+P++ T + +F + GTV ++E+ +R+RG AFVTMGS +EA A+
Sbjct: 115 RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRL 174
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF--------NLFIANLSFEARAKDLR 212
+ + GRT+KVN+ ++ + + K +T+ L++ANLS+ ++ LR
Sbjct: 175 FDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGLR 234
Query: 213 EFFISE-GWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAI 254
+ F + G+ +SA+VI+ + RS G+GF++F S + +A+
Sbjct: 235 DAFADQPGF--MSAKVIYDRSSGRSRGFGFITFSSAEAMNSAL 275
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALF-EQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
+L N+ W T + +R F +Q G + + S R+RG F+T S + +AL+
Sbjct: 218 KLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDT 277
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPV 187
+ E EGR L++N A K PPV
Sbjct: 278 MNEVELEGRPLRLNVAGQKAPVSSPPV 304
Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
L++ NL F + L E F +E V + E+++ RS G+ FV+ S + A+ AI
Sbjct: 116 LYVGNLPFSMTSSQLSEIF-AEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRL 174
Query: 257 FQGKVIMCLVIALSY 271
F G + + +++
Sbjct: 175 FDGSQVGGRTVKVNF 189
>gi|357121842|ref|XP_003562626.1| PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like
[Brachypodium distachyon]
Length = 275
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 84/169 (49%), Gaps = 12/169 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNN 160
+L N+P+T + LFEQ G+V +E+ R+RG FVTM + +E +AA+
Sbjct: 85 KLFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMSTAEEVSAAVEQ 144
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPVQPK---------PFATFN-LFIANLSFEARAKD 210
Y F+GR L+VN ++ F P P+ F + N L++ NLS+
Sbjct: 145 FNGYTFQGRPLRVNSGPPPPRDEFAPRTPRGMGGGGGGGSFDSGNKLYVGNLSWGVDNST 204
Query: 211 LREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
L F SE V+ A+VI+ + RS G+GFV++ S AIS G
Sbjct: 205 LENLF-SEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDG 252
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAA 157
S +L N+ W + + LF + G VLD ++ R+RG FVT GS DE A
Sbjct: 187 SGNKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNA 246
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNP 183
++NL+ + +GR ++V A+ K + P
Sbjct: 247 ISNLDGVDLDGRQIRVTVAESKPREP 272
>gi|449440612|ref|XP_004138078.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
Length = 330
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 91/178 (51%), Gaps = 5/178 (2%)
Query: 95 EEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE 153
EE +L N+P+ E + LFE+ GTV E+ + + +R+RG FVTM + +E
Sbjct: 146 EEPNEDAKLFVGNLPYDIDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEE 205
Query: 154 ATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA-TFNLFIANLSFEARAKDLR 212
A A++ Y+ GR L VN A + +P+PF TF +++ NL ++ L
Sbjct: 206 AEKAVDTFNRYDLSGRLLTVNKAAPRGSR--QEREPRPFQPTFRIYVGNLPWDVDNGRLE 263
Query: 213 EFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALS 270
+ F SE VV A V++ + RS G+GFV+ + AI+A G+ + I ++
Sbjct: 264 QLF-SEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMNDAIAALDGQSLDGRAIRVN 320
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVTMGSPDEATAALNN 160
R+ N+PW + + LF +HG V+D L R+RG FVTM A+
Sbjct: 247 RIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMNDAIAA 306
Query: 161 LESYEFEGRTLKVNYAKIKKKNPF 184
L+ +GR ++VN A+ + + F
Sbjct: 307 LDGQSLDGRAIRVNVAEERPRRNF 330
>gi|681912|dbj|BAA06523.1| RNA-binding protein cp33 [Arabidopsis thaliana]
Length = 321
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 100/179 (55%), Gaps = 15/179 (8%)
Query: 91 TEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTM 148
T+ EE+ RL N+P+T T ++ +F + GTV+D+++ ++ K +R+RG FVTM
Sbjct: 101 TQASGEEW---RLYVGNLPYTITSSELSQIFGEAGTVVDVQI-VYDKVTDRSRGFGFVTM 156
Query: 149 GSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPF--------ATFNLFIA 200
GS +EA A+ S + GRT+KVN+ ++ + ++ K + ++
Sbjct: 157 GSIEEAKEAMQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAG 216
Query: 201 NLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
NL + ++ L++ F + V+ A+VI+ N RS G+GF+SF+S + ++A++ G
Sbjct: 217 NLGWNLTSQGLKDAF-GDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNG 274
Score = 44.7 bits (104), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 6/90 (6%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKN--RNRGLAFVTMGSPDEATAALN 159
++ A N+ W T + ++ F VL ++ ++ +N R+RG F++ S + +AL
Sbjct: 212 KVYAGNLGWNLTSQGLKDAFGDQPGVLGAKV-IYERNTGRSRGFGFISFESAENVQSALA 270
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQP 189
+ E EGR L++N A ++K P V P
Sbjct: 271 TMNGVEVEGRALRLNLASEREK---PTVSP 297
>gi|242035621|ref|XP_002465205.1| hypothetical protein SORBIDRAFT_01g034120 [Sorghum bicolor]
gi|241919059|gb|EER92203.1| hypothetical protein SORBIDRAFT_01g034120 [Sorghum bicolor]
Length = 262
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 89/168 (52%), Gaps = 6/168 (3%)
Query: 95 EEEYSKT-RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSP 151
EEE+S+ R+ N+P++ + LFEQ G+V +E+ ++ K R+RG FVTM S
Sbjct: 76 EEEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEV-IYDKLTGRSRGFGFVTMSSV 134
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDL 211
E AA+ Y +GR+L+VN ++P P+ A +++ NLS+ L
Sbjct: 135 QEVEAAVEQFNGYVLDGRSLRVNSGPPPPRDPSSQRGPRGDAN-RVYVGNLSWGVDNSAL 193
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
F SE +V+ A +++ RS G+GFV++ S + E AIS G
Sbjct: 194 ANLF-SEQGEVLEARIVYDRESGRSRGFGFVTYGSAEEVENAISNLDG 240
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 91 TEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMG 149
+ QR R+ N+ W + + LF + G VL+ + + R+RG FVT G
Sbjct: 167 SSQRGPRGDANRVYVGNLSWGVDNSALANLFSEQGEVLEARIVYDRESGRSRGFGFVTYG 226
Query: 150 SPDEATAALNNLESYEFEGRTLKVNYAKIK 179
S +E A++NL+ + +GR ++V A+ K
Sbjct: 227 SAEEVENAISNLDGSDLDGRQIRVTVAESK 256
Score = 38.1 bits (87), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 195 FNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAI 254
+F+ NL F + L F G V EVI+ RS G+GFV+ S + E A+
Sbjct: 83 LRVFVGNLPFSVDSAQLAGLFEQAG-SVEMVEVIYDKLTGRSRGFGFVTMSSVQEVEAAV 141
Query: 255 SAFQGKVI 262
F G V+
Sbjct: 142 EQFNGYVL 149
>gi|356534904|ref|XP_003535991.1| PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 282
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 88/167 (52%), Gaps = 6/167 (3%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVTMGSP 151
+++ + S T+L N+P++ + L + +G+ IE L ++RG AFVTM
Sbjct: 102 EQDSDSSATKLYFGNLPYSVDSAKLAGLIQDYGSAELIEVLYDRDSGKSRGFAFVTMSCI 161
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDL 211
++ A + NL+ EF GRTL+VN++ K P P+ P+ LF+ NLS+ + L
Sbjct: 162 EDCNAVIENLDGKEFLGRTLRVNFS--SKPKPKEPLYPE--TEHKLFVGNLSWSVTNEIL 217
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ 258
+ F G VV A V++ RS GYGFV + ++ E A++A
Sbjct: 218 TQAFQEYG-TVVGARVLYDGETGRSRGYGFVCYSTQAEMEAAVAALN 263
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
+L N+ W+ T+E + F+++GTV+ + + R+RG FV + E AA+
Sbjct: 202 KLFVGNLSWSVTNEILTQAFQEYGTVVGARVLYDGETGRSRGYGFVCYSTQAEMEAAVAA 261
Query: 161 LESYEFEGRTLKVNYAKIKK 180
L E EGR ++V+ A+ K+
Sbjct: 262 LNDVELEGRAMRVSLAQGKR 281
>gi|125559266|gb|EAZ04802.1| hypothetical protein OsI_26976 [Oryza sativa Indica Group]
Length = 259
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 85/164 (51%), Gaps = 7/164 (4%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
++ N+P++ + LFEQ G+V +E+ + R+RG FVTM + +EA AA+
Sbjct: 76 KVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRQTGRSRGFGFVTMSTAEEAGAAVEQ 135
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPVQPKP----FATFN-LFIANLSFEARAKDLREFF 215
Y F+GR L+VN ++ F P P+ F + N L++ NL++ L F
Sbjct: 136 FNGYTFQGRPLRVNSGPPPPRDDFAPRSPRGGGSNFDSSNKLYVGNLAWGVDNSTLENLF 195
Query: 216 ISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
SE V+ A+VI+ RS G+GFV++ S + AIS G
Sbjct: 196 -SEQGTVLDAKVIYDRESGRSRGFGFVTYGSAEEVNNAISNLDG 238
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAA 157
S +L N+ W + + LF + GTVLD ++ + R+RG FVT GS +E A
Sbjct: 173 SSNKLYVGNLAWGVDNSTLENLFSEQGTVLDAKVIYDRESGRSRGFGFVTYGSAEEVNNA 232
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPF 184
++NL+ + +GR ++V A+ K + F
Sbjct: 233 ISNLDGVDLDGRQIRVTVAESKPRRQF 259
>gi|115473531|ref|NP_001060364.1| Os07g0631900 [Oryza sativa Japonica Group]
gi|22296371|dbj|BAC10140.1| putative 29 kDa ribonucleoprotein A, chloroplast precursor [Oryza
sativa Japonica Group]
gi|113611900|dbj|BAF22278.1| Os07g0631900 [Oryza sativa Japonica Group]
gi|125601192|gb|EAZ40768.1| hypothetical protein OsJ_25244 [Oryza sativa Japonica Group]
Length = 264
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 85/164 (51%), Gaps = 7/164 (4%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
++ N+P++ + LFEQ G+V +E+ + R+RG FVTM + +EA AA+
Sbjct: 81 KVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRQTGRSRGFGFVTMSTAEEAGAAVEQ 140
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPVQPKP----FATFN-LFIANLSFEARAKDLREFF 215
Y F+GR L+VN ++ F P P+ F + N L++ NL++ L F
Sbjct: 141 FNGYTFQGRPLRVNSGPPPPRDDFAPRSPRGGGSNFDSSNKLYVGNLAWGVDNSTLENLF 200
Query: 216 ISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
SE V+ A+VI+ RS G+GFV++ S + AIS G
Sbjct: 201 -SEQGTVLDAKVIYDRESGRSRGFGFVTYGSAEEVNNAISNLDG 243
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAA 157
S +L N+ W + + LF + GTVLD ++ + R+RG FVT GS +E A
Sbjct: 178 SSNKLYVGNLAWGVDNSTLENLFSEQGTVLDAKVIYDRESGRSRGFGFVTYGSAEEVNNA 237
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPF 184
++NL+ + +GR ++V A+ K + F
Sbjct: 238 ISNLDGVDLDGRQIRVTVAESKPRRQF 264
>gi|356525630|ref|XP_003531427.1| PREDICTED: 30S ribosomal protein 2, chloroplastic-like [Glycine
max]
Length = 246
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 91/171 (53%), Gaps = 9/171 (5%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATA 156
S RL N+P T T+E++ + ++HG V E+ M+ K R+R AFVTM + ++ATA
Sbjct: 68 SARRLYVGNIPRTVTNEELAKIVQEHGAVEKAEV-MYDKYSGRSRRFAFVTMKTVEDATA 126
Query: 157 ALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF-----NLFIANLSFEARAKDL 211
+ L E GR +KVN + P P+ + F +++ NL+ L
Sbjct: 127 VIEKLNGTEIGGREVKVNVTEKPLSTPDLPLLQAEESEFIDSPHKVYVGNLAKTVTTDTL 186
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
+ FF SE V+SA+V +S+GYGFV+F S++ E AIS+F ++
Sbjct: 187 KNFF-SEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEDVEAAISSFNNSLL 236
Score = 38.5 bits (88), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELS-MHSKNRNRGLAFVTMGSPDEATAALNNLESYE 165
N+ T T + ++ F + G VL ++S + +++ G FVT S ++ AA+++ +
Sbjct: 176 NLAKTVTTDTLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEDVEAAISSFNNSL 235
Query: 166 FEGRTLKVNYA 176
EG+T++VN A
Sbjct: 236 LEGQTIRVNKA 246
>gi|297837519|ref|XP_002886641.1| hypothetical protein ARALYDRAFT_475310 [Arabidopsis lyrata subsp.
lyrata]
gi|297332482|gb|EFH62900.1| hypothetical protein ARALYDRAFT_475310 [Arabidopsis lyrata subsp.
lyrata]
Length = 252
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 87/179 (48%), Gaps = 12/179 (6%)
Query: 89 VNTEQREEEYS-------KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRN 140
+N + EEE T+L N+P+ + + + +E L ++
Sbjct: 60 INVKLEEEEKDLDPPAAINTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQS 119
Query: 141 RGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIA 200
RG AFVTM + ++ ++NL+ E+ GR LKVN+A K N P P LF+
Sbjct: 120 RGFAFVTMSNVEDCNIIIDNLDGTEYLGRALKVNFADKPKPNKEPLY---PETEHKLFVG 176
Query: 201 NLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
NLS+ ++ L E F E DVV A V++ + RS GYGFV + SK ETA+ + G
Sbjct: 177 NLSWTVTSESLAEAF-RECGDVVGARVVYDGDTGRSRGYGFVCYSSKAEMETALESLDG 234
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
+L N+ WT T E + F + G V+ + R+RG FV S E AL +
Sbjct: 172 KLFVGNLSWTVTSESLAEAFRECGDVVGARVVYDGDTGRSRGYGFVCYSSKAEMETALES 231
Query: 161 LESYEFEGRTLKVNYAKIKK 180
L+ +E EGR ++VN A+ KK
Sbjct: 232 LDGFELEGRAIRVNLAQGKK 251
>gi|356508744|ref|XP_003523114.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 305
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 93/173 (53%), Gaps = 3/173 (1%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAAL 158
+ +L N+P+ + + LFEQ GTV E+ + + +++RG FVTM + +EA A+
Sbjct: 123 EAKLFVGNLPYDVDSQKLAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAENAV 182
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNP-FPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
Y+F+GR L VN A + P PP + + ++++ NL ++ L + F S
Sbjct: 183 EKFSRYDFDGRLLTVNKASPRGTRPERPPPRHSFEPSLSIYVGNLPWDVDNTRLEQIF-S 241
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALS 270
E +VV+A V++ RRS G+GFV+ + + A++A G+ + I +S
Sbjct: 242 EHGNVVNARVVYDRETRRSRGFGFVTMSDETEMKDAVAALDGQSLDGRPIRVS 294
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR-NRGLAFVTMGSPDEATAALNNLESYE 165
N+PW + + +F +HG V++ + + R +RG FVTM E A+ L+
Sbjct: 226 NLPWDVDNTRLEQIFSEHGNVVNARVVYDRETRRSRGFGFVTMSDETEMKDAVAALDGQS 285
Query: 166 FEGRTLKVNYAKIKKK 181
+GR ++V+ A+ + +
Sbjct: 286 LDGRPIRVSVAEDRPR 301
>gi|294464377|gb|ADE77701.1| unknown [Picea sitchensis]
Length = 299
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 101/174 (58%), Gaps = 14/174 (8%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKN--RNRGLAFVTMGSPDEATA 156
+ T++ N+P++ ++ + ++HG+V +E+ ++ +N R+RG AF TM S ++A A
Sbjct: 109 AGTKVYLGNLPFSCDSAELAGIIQEHGSVEMVEV-IYDQNTGRSRGFAFATMSSVEDANA 167
Query: 157 ALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA-----TFN-----LFIANLSFEA 206
+ NL+ ++ GRTL+VN + ++ ++ K + T N ++I NLS++
Sbjct: 168 LVENLDGSQYGGRTLRVNLREEASRSLRVNLRDKSRSEQRNQTNNDGQHRVYIGNLSWDV 227
Query: 207 RAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
+ L E F SE +++ A+++F RS G+GF++F ++ AE A+++ GK
Sbjct: 228 NEEILNEVF-SEHGNLLDAKIVFDRETGRSRGFGFITFSTQSEAEAAVASLNGK 280
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 91 TEQREEEYSKT--RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVT 147
+EQR + + R+ N+ W E + +F +HG +LD ++ + R+RG F+T
Sbjct: 204 SEQRNQTNNDGQHRVYIGNLSWDVNEEILNEVFSEHGNLLDAKIVFDRETGRSRGFGFIT 263
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYA 176
+ EA AA+ +L E EGR ++V+ A
Sbjct: 264 FSTQSEAEAAVASLNGKELEGRAMRVDLA 292
>gi|414887732|tpg|DAA63746.1| TPA: hypothetical protein ZEAMMB73_977373 [Zea mays]
Length = 267
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 91/190 (47%), Gaps = 14/190 (7%)
Query: 83 SSSAAAVNTEQREEEYSKT-RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRN 140
SS EQ++ E+S+ +L N+P++ + LFEQ G+V +E+ R+
Sbjct: 58 SSEYGTEGAEQQDGEFSEDLKLFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRMTGRS 117
Query: 141 RGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF----- 195
RG FVTM S +EA AA+ Y F+GR L+VN ++ P P+
Sbjct: 118 RGFGFVTMSSAEEAGAAVEQFNGYTFQGRPLRVNCGPPPPRDGSAPRAPRGGGGGGGGGS 177
Query: 196 ------NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKV 249
+++ NL++ L F SE V+ A+VI+ + RS G+GFV++ S +
Sbjct: 178 FVDSGNKVYVGNLAWGVDNSTLENLF-SEQGQVLDAKVIYDRDSGRSRGFGFVTYGSAEE 236
Query: 250 AETAISAFQG 259
AIS G
Sbjct: 237 VNNAISNLDG 246
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAA 157
S ++ N+ W + + LF + G VLD ++ R+RG FVT GS +E A
Sbjct: 181 SGNKVYVGNLAWGVDNSTLENLFSEQGQVLDAKVIYDRDSGRSRGFGFVTYGSAEEVNNA 240
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPF 184
++NL+ + +GR ++V A+ K + F
Sbjct: 241 ISNLDGIDLDGRQIRVTVAESKPRREF 267
>gi|388493590|gb|AFK34861.1| unknown [Medicago truncatula]
Length = 285
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 89/168 (52%), Gaps = 6/168 (3%)
Query: 89 VNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVT 147
+ E E ++T+L N+P++ + L E++G+ IE L ++RG AFVT
Sbjct: 101 IGGETVAEVDTRTKLYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDTGKSRGFAFVT 160
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEAR 207
M ++ A + NL+ EF GRTL+VN++ K P P+ P+ + LF+ NL++
Sbjct: 161 MSCVEDCNAVIQNLDGKEFMGRTLRVNFS--DKPKPKEPLYPE--TEYKLFVGNLAWTVT 216
Query: 208 AKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
+ + F G VV A V+F + GYGFVS+ +K +TA++
Sbjct: 217 FESFTQAFQEHG-TVVGARVLFDGETGKFRGYGFVSYATKSEMDTALA 263
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Query: 95 EEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE 153
E EY +L N+ WT T E F++HGTV+ + + + RG FV+ + E
Sbjct: 201 ETEY---KLFVGNLAWTVTFESFTQAFQEHGTVVGARVLFDGETGKFRGYGFVSYATKSE 257
Query: 154 ATAALNNLESYEFEGRTLKVNYAKIKK 180
AL +++ E EGRTL+V+ A+ K+
Sbjct: 258 MDTALAIMDNVELEGRTLRVSLAQGKR 284
>gi|149392545|gb|ABR26075.1| chloroplast 29 kDa ribonucleoprotein [Oryza sativa Indica Group]
Length = 205
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 85/164 (51%), Gaps = 7/164 (4%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
++ N+P++ + LFEQ G+V +E+ + R+RG FVTM + +EA AA+
Sbjct: 22 KVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRQTGRSRGFGFVTMSTAEEAGAAIEQ 81
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPVQPKP----FATFN-LFIANLSFEARAKDLREFF 215
Y F+GR L+VN ++ F P P+ F + N L++ NL++ L F
Sbjct: 82 FNGYTFQGRPLRVNSGPPPPRDDFAPRSPRGGGSNFDSSNKLYVGNLAWGVDNSTLENLF 141
Query: 216 ISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+G V+ A+VI+ RS G+GFV++ S + AIS G
Sbjct: 142 SEQGT-VLDAKVIYDRESGRSRGFGFVTYGSAEEVNNAISNLDG 184
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAA 157
S +L N+ W + + LF + GTVLD ++ + R+RG FVT GS +E A
Sbjct: 119 SSNKLYVGNLAWGVDNSTLENLFSEQGTVLDAKVIYDRESGRSRGFGFVTYGSAEEVNNA 178
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPF 184
++NL+ + +GR ++V A+ K + F
Sbjct: 179 ISNLDGVDLDGRQIRVTVAESKPRRQF 205
>gi|255574887|ref|XP_002528350.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
gi|223532218|gb|EEF34022.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
Length = 285
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 84/160 (52%), Gaps = 6/160 (3%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVTMGSPDEATAALN 159
T+L N+P+ + + + +GT +E L R+RG AFVTM + ++ A +
Sbjct: 113 TKLYFGNLPYNVDSAQLAGIIQDYGTPELVEVLYDRDTGRSRGFAFVTMSTVEDCNAVIE 172
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEG 219
NL+ +F GR L+VN++ K P P+ P+ LF+ NLS+ ++ L E F G
Sbjct: 173 NLDGSQFMGRILRVNFS--DKPKPKEPLYPE--TEHKLFVGNLSWSVTSESLVEAFQEYG 228
Query: 220 WDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
++V A V++ RS GYGFV + ++ E A+ + G
Sbjct: 229 -NIVGARVLYDGETGRSRGYGFVCYATRSEMENALVSLNG 267
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
+L N+ W+ T E + F+++G ++ + + R+RG FV + E AL +
Sbjct: 205 KLFVGNLSWSVTSESLVEAFQEYGNIVGARVLYDGETGRSRGYGFVCYATRSEMENALVS 264
Query: 161 LESYEFEGRTLKVNYAKIKK 180
L E EGR ++V+ A+ KK
Sbjct: 265 LNGVELEGRAMRVSLAQGKK 284
>gi|42407939|dbj|BAD09078.1| putative nucleic acid-binding protein [Oryza sativa Japonica Group]
gi|125604308|gb|EAZ43633.1| hypothetical protein OsJ_28256 [Oryza sativa Japonica Group]
gi|215697914|dbj|BAG92121.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 305
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 83/156 (53%), Gaps = 5/156 (3%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYE 165
N+P+ E + LFEQ G V E+ + + ++RG FVTM + +EA A+ L Y+
Sbjct: 133 NLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIEMLNRYD 192
Query: 166 FEGRTLKVNYAKIKKKNPFPPVQPKPFA-TFNLFIANLSFEARAKDLREFFISEGWDVVS 224
GR L VN A + P P+ FA F ++ NL ++ L + F SE +VV+
Sbjct: 193 INGRLLNVNRAAPRGSRVERP--PRQFAPAFRAYVGNLPWQVDDSRLLQLF-SEHGEVVN 249
Query: 225 AEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
A V++ RS G+GFVS SK+ + AISA G+
Sbjct: 250 ASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQ 285
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
R N+PW + LF +HG V++ + + R+RG FV+M S +E A++
Sbjct: 222 RAYVGNLPWQVDDSRLLQLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAISA 281
Query: 161 LESYEFEGRTLKVNYAKIKKKNPF 184
L+ E +GR L+VN A + + F
Sbjct: 282 LDGQELDGRPLRVNVAAERPQRGF 305
>gi|125562527|gb|EAZ07975.1| hypothetical protein OsI_30233 [Oryza sativa Indica Group]
Length = 306
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 83/156 (53%), Gaps = 5/156 (3%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYE 165
N+P+ E + LFEQ G V E+ + + ++RG FVTM + +EA A+ L Y+
Sbjct: 134 NLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIEMLNRYD 193
Query: 166 FEGRTLKVNYAKIKKKNPFPPVQPKPFA-TFNLFIANLSFEARAKDLREFFISEGWDVVS 224
GR L VN A + P P+ FA F ++ NL ++ L + F SE +VV+
Sbjct: 194 INGRLLNVNRAAPRGSRVERP--PRQFAPAFRAYVGNLPWQVDDSRLLQLF-SEHGEVVN 250
Query: 225 AEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
A V++ RS G+GFVS SK+ + AISA G+
Sbjct: 251 ASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQ 286
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
R N+PW + LF +HG V++ + + R+RG FV+M S +E A++
Sbjct: 223 RAYVGNLPWQVDDSRLLQLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAISA 282
Query: 161 LESYEFEGRTLKVNYAKIKKKNPF 184
L+ E +GR L+VN A + + F
Sbjct: 283 LDGQELDGRPLRVNVAAERPQRGF 306
>gi|297608990|ref|NP_001062481.2| Os08g0557100 [Oryza sativa Japonica Group]
gi|255678651|dbj|BAF24395.2| Os08g0557100, partial [Oryza sativa Japonica Group]
Length = 194
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 83/156 (53%), Gaps = 5/156 (3%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYE 165
N+P+ E + LFEQ G V E+ + + ++RG FVTM + +EA A+ L Y+
Sbjct: 22 NLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIEMLNRYD 81
Query: 166 FEGRTLKVNYAKIKKKNPFPPVQPKPFA-TFNLFIANLSFEARAKDLREFFISEGWDVVS 224
GR L VN A + P P+ FA F ++ NL ++ L + F SE +VV+
Sbjct: 82 INGRLLNVNRAAPRGSRVERP--PRQFAPAFRAYVGNLPWQVDDSRLLQLF-SEHGEVVN 138
Query: 225 AEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
A V++ RS G+GFVS SK+ + AISA G+
Sbjct: 139 ASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQ 174
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
R N+PW + LF +HG V++ + + R+RG FV+M S +E A++
Sbjct: 111 RAYVGNLPWQVDDSRLLQLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAISA 170
Query: 161 LESYEFEGRTLKVNYAKIKKKNPF 184
L+ E +GR L+VN A + + F
Sbjct: 171 LDGQELDGRPLRVNVAAERPQRGF 194
>gi|133246|sp|P19682.1|ROC3_NICSY RecName: Full=28 kDa ribonucleoprotein, chloroplastic; Short=28RNP;
Flags: Precursor
gi|100388|pir||S12109 ribonucleoprotein, 28K, precursor - common tobacco
gi|19750|emb|CAA37880.1| unnamed protein product [Nicotiana sylvestris]
Length = 276
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 92/187 (49%), Gaps = 5/187 (2%)
Query: 86 AAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLA 144
A TE+ +E +L N+P+ E + LF+Q G V E+ + + +R+RG
Sbjct: 82 GEAGETEEYQEPSEDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFG 141
Query: 145 FVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA-TFNLFIANLS 203
FVTM + +EA A+ Y+ GR L VN K + P P+ F T+ +++ N+
Sbjct: 142 FVTMSTVEEADKAVELYSQYDLNGRLLTVN--KAAPRGSRPERAPRTFQPTYRIYVGNIP 199
Query: 204 FEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
++ L + F SE VVSA V+F RS G+GFV+ S+ AI+ G+ +
Sbjct: 200 WDIDDARLEQVF-SEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLD 258
Query: 264 CLVIALS 270
I ++
Sbjct: 259 GRTIRVN 265
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
R+ N+PW + +F +HG V+ + + R+RG FVTM S E + A+ N
Sbjct: 192 RIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIAN 251
Query: 161 LESYEFEGRTLKVNYAKIKKK 181
L+ +GRT++VN A+ + +
Sbjct: 252 LDGQTLDGRTIRVNAAEERPR 272
>gi|255089439|ref|XP_002506641.1| predicted protein [Micromonas sp. RCC299]
gi|226521914|gb|ACO67899.1| predicted protein [Micromonas sp. RCC299]
Length = 285
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 84/161 (52%), Gaps = 4/161 (2%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNL 161
R N+ W + E + A Q GTV+ E++ R++G V +PD A +A+N L
Sbjct: 110 RCYVGNLAWETNEESLIAHCSQVGTVVQAEVAKQPGGRSKGWGLVDFETPDAANSAINTL 169
Query: 162 ESYEFEGRTL--KVNYAKIKKKNPFPPV-QPKPFATFNLFIANLSFEARAKDLREFFISE 218
+ + +GR++ ++ A K+ P +P+ + + + NL + ++DLR+ F
Sbjct: 170 HNSDLQGRSIIVRLERAGGANKSGGPNAGRPEASSGLQIVVRNLPWSTTSEDLRQVFQQV 229
Query: 219 GWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
G V+ AE + H + RS G+G V F++++ A+ AI F G
Sbjct: 230 G-TVIKAEAVCHADTGRSKGWGTVLFETREQAQAAIQGFNG 269
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 79/180 (43%), Gaps = 15/180 (8%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATA 156
E RL N+PW++T +++R +F GT+ +++ + R+RG V + +EA
Sbjct: 3 EGPTNRLYVGNIPWSTTVDELRGIFSGCGTITLVDIPTGRQGRSRGYGIVEYSNVNEAQV 62
Query: 157 ALNNLESYEFEGRTLKVNYAKI-------KKKNPFPPVQPKPFA-TFNLFIANLSFEARA 208
A+ L+ + R + V K K + P A ++ NL++E
Sbjct: 63 AIQTLDGHTLGDRNITVREDKAPTKSAPSKSGGNRSTIGDTPAADGCRCYVGNLAWETNE 122
Query: 209 KDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAI-----SAFQGKVIM 263
+ L G VV AEV RS G+G V F++ A +AI S QG+ I+
Sbjct: 123 ESLIAHCSQVG-TVVQAEVAKQPGG-RSKGWGLVDFETPDAANSAINTLHNSDLQGRSII 180
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 94 REEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPD 152
R E S ++V +N+PW++T ED+R +F+Q GTV+ E H+ R++G V + +
Sbjct: 199 RPEASSGLQIVVRNLPWSTTSEDLRQVFQQVGTVIKAEAVCHADTGRSKGWGTVLFETRE 258
Query: 153 EATAALNNLESYEFEGRTLKV 173
+A AA+ E E R +++
Sbjct: 259 QAQAAIQGFNGVELEHRPMQI 279
>gi|297795791|ref|XP_002865780.1| hypothetical protein ARALYDRAFT_918033 [Arabidopsis lyrata subsp.
lyrata]
gi|297311615|gb|EFH42039.1| hypothetical protein ARALYDRAFT_918033 [Arabidopsis lyrata subsp.
lyrata]
Length = 291
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 114/261 (43%), Gaps = 25/261 (9%)
Query: 29 PFVSLLQKQQKQHYNYFFPLSSSPFHAYTFPITPKKVSPFVFHFSATTQDPFVDSSSAAA 88
P +S + + H N+ P T + SP V S T+ P + +
Sbjct: 27 PSISTISSSKPHHSNFSLPPRPINLPLSLKSKTLRNSSPIVTFVSQTSDWPEEEEGEDGS 86
Query: 89 V-----------NTEQRE---EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM 134
+ +TE E + +L N+P+ + + LFEQ GTV E+S
Sbjct: 87 IGGTSVTVDESFDTEDGGKFPEPPEEAKLFVGNLPYDVDSQALAMLFEQAGTV---EISE 143
Query: 135 HSKNRN----RGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPK 190
NR+ RG FVTM + +EA A+ YE GR L VN A + P QP+
Sbjct: 144 VIYNRDTDQSRGFGFVTMSTVEEAKKAVEKFNRYEVNGRLLTVNIAAPRGSR--PERQPR 201
Query: 191 PF-ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKV 249
+ A F +++ NL ++ L++ F SE VV A V++ RS G+GFV+ ++
Sbjct: 202 QYDAAFRIYVGNLPWDVDNDRLQQVF-SEHGKVVDARVVYDRETGRSRGFGFVTMSNENE 260
Query: 250 AETAISAFQGKVIMCLVIALS 270
AI+A G+ + I ++
Sbjct: 261 VNDAIAALDGQNLEGRAIKVN 281
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
R+ N+PW ++ ++ +F +HG V+D + + R+RG FVTM + +E A+
Sbjct: 208 RIYVGNLPWDVDNDRLQQVFSEHGKVVDARVVYDRETGRSRGFGFVTMSNENEVNDAIAA 267
Query: 161 LESYEFEGRTLKVNYAKIKKKNPF 184
L+ EGR +KVN A+ + + F
Sbjct: 268 LDGQNLEGRAIKVNVAEERPRRGF 291
>gi|242048706|ref|XP_002462099.1| hypothetical protein SORBIDRAFT_02g018650 [Sorghum bicolor]
gi|241925476|gb|EER98620.1| hypothetical protein SORBIDRAFT_02g018650 [Sorghum bicolor]
Length = 242
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 92/173 (53%), Gaps = 16/173 (9%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDE 153
E + +L NVP T T++++R +F HGTV E+ M+ K NR+R FVTM + +E
Sbjct: 62 EVVAARKLYVGNVPRTVTNDELRDMFAAHGTVERAEV-MYDKYTNRSRRFGFVTMSTVEE 120
Query: 154 ATAALNNLESYEFEGRTLKVNYAK-----IKKKNPFPPVQPKPF---ATFNLFIANLSFE 205
A AA+ L E GR +KVN + I + P + +P + + +++ NL+
Sbjct: 121 ANAAVEALNGTEVGGRKIKVNVTESFLPNIDRSAP----ESEPVFVDSQYKVYVGNLAKN 176
Query: 206 ARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ 258
+ L+ FF SE ++SA V +S GYGFV+F S++ E A++ F
Sbjct: 177 VTTEVLKNFF-SEKGKILSATVSHIPGTSKSKGYGFVTFSSEEEVEAAVATFN 228
Score = 38.1 bits (87), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELS-MHSKNRNRGLAFVTMGSPDEATAA 157
S+ ++ N+ T E ++ F + G +L +S + ++++G FVT S +E AA
Sbjct: 164 SQYKVYVGNLAKNVTTEVLKNFFSEKGKILSATVSHIPGTSKSKGYGFVTFSSEEEVEAA 223
Query: 158 LNNLESYEFEGRTLKVNYA 176
+ + E EG+ ++VN A
Sbjct: 224 VATFNNAELEGQPIRVNRA 242
>gi|226533870|gb|ACO71288.1| cp31BHv [Triticum aestivum]
Length = 170
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 85/156 (54%), Gaps = 5/156 (3%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYE 165
N+P+ E + LF+Q G V E+ + + ++RG FVTM + +EA A+ Y+
Sbjct: 9 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 68
Query: 166 FEGRTLKVNYAKIKKKNPFPPVQPKPFAT-FNLFIANLSFEARAKDLREFFISEGWDVVS 224
GR L VN A + P P+ FA+ F ++ NL ++A L + F SE +VV+
Sbjct: 69 ISGRLLNVNRAAQRGSRVERP--PRQFASSFRAYVGNLPWQAEDSRLVQLF-SEHGEVVN 125
Query: 225 AEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
A V++ RS G+GFV+ SK+ ++AISA G+
Sbjct: 126 ATVVYDRETGRSRGFGFVTMASKEDLDSAISALDGQ 161
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
R N+PW + + LF +HG V++ + + R+RG FVTM S ++ +A++
Sbjct: 98 RAYVGNLPWQAEDSRLVQLFSEHGEVVNATVVYDRETGRSRGFGFVTMASKEDLDSAISA 157
Query: 161 LESYEFEGRTLKV 173
L+ E +GR L+V
Sbjct: 158 LDGQEMDGRPLRV 170
>gi|388500434|gb|AFK38283.1| unknown [Lotus japonicus]
Length = 273
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 81/155 (52%), Gaps = 6/155 (3%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVTMGSPDEATAALN 159
T+L N+P++ + L E++G+ IE L ++RG AFVTM ++ +
Sbjct: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE 160
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEG 219
NL+ EF GRTL+VN + K P P+ P+ LF+ NLS+ ++ L + F G
Sbjct: 161 NLDGKEFLGRTLRVNLS--DKPKPKEPLYPE--TEHKLFVGNLSWTVTSESLIQVFQEYG 216
Query: 220 WDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAI 254
VV A V++ RS GYGFV + + ETA+
Sbjct: 217 -TVVGARVLYDGETGRSRGYGFVCYSKRSELETAL 250
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
+L N+ WT T E + +F+++GTV+ + + R+RG FV E AL +
Sbjct: 193 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 252
Query: 161 LESYEFEGRTLKVNYAKIKK 180
L + E EGR ++V+ A+ K+
Sbjct: 253 LNNVELEGRAIRVSLAEGKR 272
>gi|224119514|ref|XP_002318093.1| predicted protein [Populus trichocarpa]
gi|222858766|gb|EEE96313.1| predicted protein [Populus trichocarpa]
Length = 327
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 87/163 (53%), Gaps = 5/163 (3%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAAL 158
+ ++ N+P+ E + LFEQ GTV E+ + + + +RG FVTM + +E+ A+
Sbjct: 148 EAKIFVGNLPYDVDSEKLAMLFEQAGTVEIAEVIYNRETDTSRGFGFVTMSTVEESEKAV 207
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNP-FPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
L Y+ +GR L VN A + P PP +P + +++ NL ++ + L + F S
Sbjct: 208 EMLHRYDLDGRFLTVNKAAPRGSRPERPPRVSEP--GYRIYVGNLPWDVDSGRLEQIF-S 264
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
E VVSA V+F RS G+GFV+ ++ AI+A G+
Sbjct: 265 EHGKVVSARVVFDRETNRSRGFGFVTMSTESELNDAIAALDGQ 307
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
R+ N+PW + +F +HG V+ + + NR+RG FVTM + E A+
Sbjct: 244 RIYVGNLPWDVDSGRLEQIFSEHGKVVSARVVFDRETNRSRGFGFVTMSTESELNDAIAA 303
Query: 161 LESYEFEGRTLKVNYAKIKKKNPF 184
L+ +GR ++VN A+ + + F
Sbjct: 304 LDGQNLDGRPIRVNVAEERPRRTF 327
>gi|118489133|gb|ABK96373.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 255
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 92/168 (54%), Gaps = 9/168 (5%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAALN 159
RL N+P T T+E++ + E+HG V E+ M+ K R+R AFVTM + ++A AA+
Sbjct: 80 RLYVGNIPRTLTNEELTKIVEEHGAVEKAEV-MYDKYSGRSRRFAFVTMKTAEDANAAIE 138
Query: 160 NLESYEFEGRTLKVNYA-KIKKKNPFPPVQPKPF----ATFNLFIANLSFEARAKDLREF 214
L E GR +KVN K + P +Q + + +++ NL+ L+ F
Sbjct: 139 KLNGTEIGGREIKVNITEKPLQSLDLPSLQSDETQFVDSPYKVYVGNLAKTVATDTLKNF 198
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
F +G +V+SA+V +S+G+GFV+F S++ E AIS+F ++
Sbjct: 199 FSKKG-NVLSAKVSRVPGTSKSSGFGFVTFSSEEDVEVAISSFNNSLL 245
>gi|224055617|ref|XP_002298568.1| predicted protein [Populus trichocarpa]
gi|118486956|gb|ABK95311.1| unknown [Populus trichocarpa]
gi|222845826|gb|EEE83373.1| predicted protein [Populus trichocarpa]
Length = 276
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 75/280 (26%), Positives = 128/280 (45%), Gaps = 25/280 (8%)
Query: 1 MSLLRLYCCFPSTSYLYTEPQQQQSHEAPFVSLLQKQQKQHYNYFFP----LSSSPFHAY 56
M+ RL + +T+ ++ S ++PF+S+ K K ++ FP L +S F +
Sbjct: 1 MAETRLMSVYRTTNTVF-----DTSIKSPFISITSKPIKVVFSTSFPSWVSLKTSNFSTF 55
Query: 57 -TFPITPKKVSPFVFHFSATT----QDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWT 111
T P+ + S + T ++ F D S + +L N+P+
Sbjct: 56 NTIPLVAQ-TSDWAQQDEEDTVTLGEESFGDGSEETFPEP------PEEAKLYVGNLPYD 108
Query: 112 STHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYEFEGRT 170
E++ LF+Q GTV E+ + + +++RG FVTM + DEA A+ Y+ GR
Sbjct: 109 VNSENLAQLFDQAGTVEVAEIIYNRETDQSRGFGFVTMSTVDEAEKAIEKFHRYDLNGRF 168
Query: 171 LKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFH 230
L VN A + P P K + +++ NL ++ L + F SE VV+A V+
Sbjct: 169 LTVNKAAPRGSRPERPSVFK--IAYRIYVGNLPWQVDDARLEQVF-SEHGQVVNARVVCD 225
Query: 231 DNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALS 270
RS G+GFV+ S+ AI+A G+ + I ++
Sbjct: 226 RETGRSRGFGFVTMSSETELNDAIAALDGQSLDGRAITVN 265
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
R+ N+PW + +F +HG V++ + + R+RG FVTM S E A+
Sbjct: 192 RIYVGNLPWQVDDARLEQVFSEHGQVVNARVVCDRETGRSRGFGFVTMSSETELNDAIAA 251
Query: 161 LESYEFEGRTLKVNYAK 177
L+ +GR + VN A+
Sbjct: 252 LDGQSLDGRAITVNIAQ 268
>gi|388518645|gb|AFK47384.1| unknown [Lotus japonicus]
Length = 307
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 89/178 (50%), Gaps = 12/178 (6%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNN 160
++ N+PW E++ LFE+ G+V E+ + + N++RG FV M + ++ ALN
Sbjct: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPVQPKPF--------ATFNLFIANLSFEARAKDLR 212
YE +GR L VN A K+ P P P+ F + ++++ NL + A L
Sbjct: 181 FSGYELDGRVLTVNKATPKEARPERP--PRTFGSGSGSRDSGLSVYVGNLPWSVDAARLE 238
Query: 213 EFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALS 270
E F G +V +A ++ RS G+GFV+ S+ AI+A G+ + I +S
Sbjct: 239 EIFREHG-NVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRVS 295
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYE 165
N+PW+ + +F +HG V + + M + R+RG FVTM S + A+ L+
Sbjct: 227 NLPWSVDAARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQS 286
Query: 166 FEGRTLKVNYAKIK 179
+GRT++V+ A+ +
Sbjct: 287 LDGRTIRVSVAEGR 300
>gi|297816516|ref|XP_002876141.1| RNA-binding protein cp33 [Arabidopsis lyrata subsp. lyrata]
gi|297321979|gb|EFH52400.1| RNA-binding protein cp33 [Arabidopsis lyrata subsp. lyrata]
Length = 330
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 93/168 (55%), Gaps = 12/168 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAALN 159
RL N+P+T T ++ LF + G V+D+++ ++ K +R+RG FVTMG+ +EA A+
Sbjct: 118 RLYVGNLPYTITSSELSQLFGEAGNVVDVQI-VYDKVTDRSRGFGFVTMGTIEEAKEAIQ 176
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPF--------ATFNLFIANLSFEARAKDL 211
S + GRT+KVN ++ + ++ K + ++ NL + ++ L
Sbjct: 177 MFNSSQIGGRTVKVNLPEVPRGGEREVMRTKIRDNNRSYVDSPHKIYAGNLGWNLTSQGL 236
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
++ F + V+ A+VI+ N RS G+GF+SF+S + ++A++ G
Sbjct: 237 KDAF-GDQPGVLGAKVIYERNTGRSRGFGFISFESAEDVQSALATMNG 283
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 6/90 (6%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKN--RNRGLAFVTMGSPDEATAALN 159
++ A N+ W T + ++ F VL ++ ++ +N R+RG F++ S ++ +AL
Sbjct: 221 KIYAGNLGWNLTSQGLKDAFGDQPGVLGAKV-IYERNTGRSRGFGFISFESAEDVQSALA 279
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQP 189
+ E EGR L++N A +++ P V P
Sbjct: 280 TMNGVEVEGRALRLNLASERER---PTVSP 306
Score = 37.4 bits (85), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
L++ NL + + +L + F E +VV ++++ RS G+GFV+ + + A+ AI
Sbjct: 119 LYVGNLPYTITSSELSQLF-GEAGNVVDVQIVYDKVTDRSRGFGFVTMGTIEEAKEAIQM 177
Query: 257 FQGKVIMCLVIALS 270
F I + ++
Sbjct: 178 FNSSQIGGRTVKVN 191
>gi|224106031|ref|XP_002314019.1| predicted protein [Populus trichocarpa]
gi|222850427|gb|EEE87974.1| predicted protein [Populus trichocarpa]
Length = 255
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 92/168 (54%), Gaps = 9/168 (5%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAALN 159
RL N+P T T+E++ + E+HG V E+ M+ K R+R AFVTM + ++A AA+
Sbjct: 80 RLYVGNIPRTLTNEELTKIVEEHGAVEKAEV-MYDKYSGRSRRFAFVTMKTAEDANAAIE 138
Query: 160 NLESYEFEGRTLKVNYA-KIKKKNPFPPVQPKPF----ATFNLFIANLSFEARAKDLREF 214
L E GR +KVN K + P +Q + + +++ NL+ L+ F
Sbjct: 139 KLNGTEIGGREIKVNITEKPLQSLDLPSLQSDESQFVDSPYKVYVGNLAKTVATDTLKNF 198
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
F +G +V+SA+V +S+G+GFV+F S++ E AIS+F ++
Sbjct: 199 FSKKG-NVLSAKVSRVPGTSKSSGFGFVTFSSEEDVEVAISSFNNSLL 245
>gi|255556984|ref|XP_002519525.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
gi|223541388|gb|EEF42939.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
Length = 280
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 91/194 (46%), Gaps = 14/194 (7%)
Query: 89 VNTEQREEEYSKT-RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAF 145
V+++ E +S+ +L N+P+ + LFE G V +E+ ++ K R+RG F
Sbjct: 79 VSSDGDESSFSQDLKLFVGNLPFNVDSAQLAGLFESAGNVEMVEV-IYDKVTGRSRGFGF 137
Query: 146 VTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPK---------PFATFN 196
VTM S DE AA YE EGR L+VN ++ P+
Sbjct: 138 VTMSSIDEVEAAAQQFNGYELEGRALRVNSGPPPQRESSFSRSPRFGGGGGGGESLEGNR 197
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
L++ NLS+ L FF SE VV A+V++ RS G+GFV++ S + E AI +
Sbjct: 198 LYVGNLSWSVDNLALESFF-SEQGKVVDAKVVYDRESGRSRGFGFVTYSSAEEVENAIDS 256
Query: 257 FQGKVIMCLVIALS 270
G + I +S
Sbjct: 257 LNGAELDGRAIRVS 270
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEA 154
E RL N+ W+ + + + F + G V+D ++ + R+RG FVT S +E
Sbjct: 191 ESLEGNRLYVGNLSWSVDNLALESFFSEQGKVVDAKVVYDRESGRSRGFGFVTYSSAEEV 250
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPF 184
A+++L E +GR ++V+ A+ + + F
Sbjct: 251 ENAIDSLNGAELDGRAIRVSVAEARPRRQF 280
>gi|67471742|ref|XP_651783.1| enhancer binding protein-1 [Entamoeba histolytica HM-1:IMSS]
gi|56468563|gb|EAL46397.1| enhancer binding protein-1 [Entamoeba histolytica HM-1:IMSS]
gi|449709038|gb|EMD48384.1| enhancer binding protein, putative [Entamoeba histolytica KU27]
Length = 306
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 91/174 (52%), Gaps = 13/174 (7%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKN----RNRGLAFVTM 148
+R E + L +N+P+ T E ++ +F + G V + H K +N G+AF+T+
Sbjct: 105 KRTNEVTDNMLFIKNLPFAITEEKLKEMFSKFGVVEITLIKTHRKKGNVTKNNGIAFITV 164
Query: 149 GSPDEATAALNNLESYEFEGRTLKV--NYAKIKKKNPFPPV-QPKPFATFNLFIANLSFE 205
+ +E A+ + ++E EGR + V Y K++ K +PK + N+F+ NL F
Sbjct: 165 KTAEEQKKAIAEMNNFEVEGRKITVAAAYKKVENKQTTKKTNEPKSLSETNVFVKNLPFT 224
Query: 206 ARAKDLREFFISEGWDVVSAEVIFHDNPR----RSAGYGFVSFKSKKVAETAIS 255
+ ++ F E +DVV A ++ N + RS GYGFV+FK+ + + AI+
Sbjct: 225 LTDEGFKKLF--EKYDVVEATIVKRHNKKLNVDRSKGYGFVTFKTAEQQKKAIA 276
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK----NRNRGLAFVTMGSPDEA 154
S+T + +N+P+T T E + LFE++ V + H+K +R++G FVT + ++
Sbjct: 212 SETNVFVKNLPFTLTDEGFKKLFEKYDVVEATIVKRHNKKLNVDRSKGYGFVTFKTAEQQ 271
Query: 155 TAALNNLESYEFEGRTLKVNYA 176
A+ ++++E EGR + V A
Sbjct: 272 KKAIAEMDNFEVEGRKITVTSA 293
>gi|15218972|ref|NP_176208.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|13194798|gb|AAK15561.1|AF348590_1 putative nucleic acid-binding protein [Arabidopsis thaliana]
gi|4249379|gb|AAD14476.1| Strong similarity to gb|X82030 chloroplast RNA binding protein
(RNP1) from Phaseolus vulgaris [Arabidopsis thaliana]
gi|21593720|gb|AAM65687.1| nucleic acid-binding protein, putative [Arabidopsis thaliana]
gi|222423361|dbj|BAH19654.1| AT1G60000 [Arabidopsis thaliana]
gi|332195527|gb|AEE33648.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 258
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 80/160 (50%), Gaps = 5/160 (3%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVTMGSPDEATAALN 159
T+L N+P+ + + + +E L ++RG AFVTM + ++ ++
Sbjct: 85 TKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIID 144
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEG 219
NL+ E+ GR LKVN+A K N P P LF+ NLS+ ++ L F E
Sbjct: 145 NLDGTEYLGRALKVNFADKPKPNKEPLY---PETEHKLFVGNLSWTVTSESLAGAF-REC 200
Query: 220 WDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
DVV A V+F + RS GYGFV + SK ETA+ + G
Sbjct: 201 GDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDG 240
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
+L N+ WT T E + F + G V+ + R+RG FV S E AL +
Sbjct: 178 KLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALES 237
Query: 161 LESYEFEGRTLKVNYAKIKK 180
L+ +E EGR ++VN A+ KK
Sbjct: 238 LDGFELEGRAIRVNLAQGKK 257
>gi|115449577|ref|NP_001048500.1| Os02g0815200 [Oryza sativa Japonica Group]
gi|47847880|dbj|BAD21673.1| putative RNA-binding protein RNP1 precursor [Oryza sativa Japonica
Group]
gi|47848169|dbj|BAD21996.1| putative RNA-binding protein RNP1 precursor [Oryza sativa Japonica
Group]
gi|113538031|dbj|BAF10414.1| Os02g0815200 [Oryza sativa Japonica Group]
gi|125584133|gb|EAZ25064.1| hypothetical protein OsJ_08857 [Oryza sativa Japonica Group]
gi|215695143|dbj|BAG90334.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737594|dbj|BAG96724.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 316
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 83/160 (51%), Gaps = 6/160 (3%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVTMGSPDEATAALN 159
T+L N+P+ + + + + T +E L + R+RG AFVTM + ++ +
Sbjct: 145 TKLYFGNLPYNCDSAQLAGIVQDYATPEMVEVLYDRATGRSRGFAFVTMSTIEDCEQVIK 204
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEG 219
NL+ + GRT++VN+A P P + P LF+ NLS+ ++ L E F G
Sbjct: 205 NLDGSLYSGRTMRVNFA----DKPKPKLPLYPETEHKLFVGNLSWTVTSEMLTEMFQKCG 260
Query: 220 WDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+VV A V++ RS GYGFV + +K+ + A+S+ G
Sbjct: 261 -NVVGARVLYDGETGRSRGYGFVCYSTKEEMDEALSSLNG 299
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
+L N+ WT T E + +F++ G V+ + + R+RG FV + +E AL++
Sbjct: 237 KLFVGNLSWTVTSEMLTEMFQKCGNVVGARVLYDGETGRSRGYGFVCYSTKEEMDEALSS 296
Query: 161 LESYEFEGRTLKVNYAKIKK 180
L E EGR ++VN A KK
Sbjct: 297 LNGTELEGREIRVNLALGKK 316
>gi|8163877|gb|AAF73892.1|AF224345_1 enhancer binding protein-1 [Entamoeba histolytica]
Length = 247
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 92/174 (52%), Gaps = 13/174 (7%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKN----RNRGLAFVTM 148
+R E + L +N+P+ T E ++ +F + G V + H K +N G+AF+T+
Sbjct: 46 KRTNEVTDNMLFIKNLPFAITEEKLKEMFSKFGVVEITLIKTHRKKGNVTKNNGIAFITV 105
Query: 149 GSPDEATAALNNLESYEFEGRTLKV--NYAKIKKKNPFPPV-QPKPFATFNLFIANLSFE 205
+ +E A+ ++++E EGR + V Y K++ K +PK + N+F+ NL F
Sbjct: 106 KTAEEQKKAIAEMDNFEVEGRKITVAAAYKKVENKQTTKKTNEPKSLSETNVFVKNLPFT 165
Query: 206 ARAKDLREFFISEGWDVVSAEVIFHDNPR----RSAGYGFVSFKSKKVAETAIS 255
+ ++ F E +DVV A ++ N + RS GYGFV+FK+ + + AI+
Sbjct: 166 LTDEGFKKLF--EKYDVVEATIVKRHNKKLNVDRSKGYGFVTFKTAEQQKKAIA 217
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK----NRNRGLAFVTMGSPDEA 154
S+T + +N+P+T T E + LFE++ V + H+K +R++G FVT + ++
Sbjct: 153 SETNVFVKNLPFTLTDEGFKKLFEKYDVVEATIVKRHNKKLNVDRSKGYGFVTFKTAEQQ 212
Query: 155 TAALNNLESYEFEGRTLKVNYA 176
A+ ++++E EGR + V A
Sbjct: 213 KKAIAEMDNFEVEGRKITVTSA 234
>gi|356557128|ref|XP_003546870.1| PREDICTED: 30S ribosomal protein 2, chloroplastic-like [Glycine
max]
Length = 246
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 90/180 (50%), Gaps = 33/180 (18%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAALN 159
RL N+P T T++++ + ++HG V E+ M+ K R+R AFVTM + ++ATA +
Sbjct: 71 RLYVGNIPRTVTNDELAKIVQEHGAVEKAEV-MYDKYSGRSRRFAFVTMKTVEDATAVIE 129
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNL-----------------FIANL 202
L E GR +KVN V KP +T +L ++ NL
Sbjct: 130 KLNGTELGGREIKVN------------VTEKPLSTLDLPLLQAEESEFIDSPHKVYVGNL 177
Query: 203 SFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
+ L+ FF SE V+SA+V +S+GYGFV+F S++ E AIS+F ++
Sbjct: 178 AKTVTTDTLKNFF-SEKGKVLSAKVSRVPGTSKSSGYGFVTFPSEEDVEAAISSFNNSLL 236
Score = 37.4 bits (85), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELS-MHSKNRNRGLAFVTMGSPDEATAALNNLESYE 165
N+ T T + ++ F + G VL ++S + +++ G FVT S ++ AA+++ +
Sbjct: 176 NLAKTVTTDTLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFPSEEDVEAAISSFNNSL 235
Query: 166 FEGRTLKVNYA 176
EG+T++VN A
Sbjct: 236 LEGQTIRVNKA 246
>gi|125541605|gb|EAY88000.1| hypothetical protein OsI_09422 [Oryza sativa Indica Group]
Length = 318
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 83/160 (51%), Gaps = 6/160 (3%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVTMGSPDEATAALN 159
T+L N+P+ + + + + T +E L + R+RG AFVTM + ++ +
Sbjct: 147 TKLYFGNLPYNCDSAQLAGIVQDYATPEMVEVLYDRATGRSRGFAFVTMSTIEDCEQVIK 206
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEG 219
NL+ + GRT++VN+A P P + P LF+ NLS+ ++ L E F G
Sbjct: 207 NLDGSLYSGRTMRVNFA----DKPKPKLPLYPETEHKLFVGNLSWTVTSEMLTEMFQKCG 262
Query: 220 WDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+VV A V++ RS GYGFV + +K+ + A+S+ G
Sbjct: 263 -NVVGARVLYDGETGRSRGYGFVCYSTKEEMDEALSSLNG 301
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
+L N+ WT T E + +F++ G V+ + + R+RG FV + +E AL++
Sbjct: 239 KLFVGNLSWTVTSEMLTEMFQKCGNVVGARVLYDGETGRSRGYGFVCYSTKEEMDEALSS 298
Query: 161 LESYEFEGRTLKVNYAKIKK 180
L E EGR ++VN A KK
Sbjct: 299 LNGTELEGREIRVNLALGKK 318
>gi|326527719|dbj|BAK08134.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 283
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 85/156 (54%), Gaps = 5/156 (3%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYE 165
N+P+ E + LF+Q G V E+ + + ++RG FVTM + +EA A+ Y+
Sbjct: 111 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 170
Query: 166 FEGRTLKVNYAKIKKKNPFPPVQPKPFAT-FNLFIANLSFEARAKDLREFFISEGWDVVS 224
GR L VN A + P P+ FA+ F ++ NL ++A L + F SE +VV+
Sbjct: 171 ISGRLLNVNRAAQRGSRVERP--PRQFASSFRAYVGNLPWQAEDSRLVQMF-SEHGEVVN 227
Query: 225 AEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
A +++ RS G+GFV+ SK+ ++AISA G+
Sbjct: 228 ATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQ 263
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
R N+PW + + +F +HG V++ + + R+RG FVTM S ++ +A++
Sbjct: 200 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 259
Query: 161 LESYEFEGRTLKVNYAKIKKKNPF 184
L+ E +GR L+VN A + + F
Sbjct: 260 LDGQEMDGRPLRVNVAAERPQRGF 283
>gi|115453241|ref|NP_001050221.1| Os03g0376600 [Oryza sativa Japonica Group]
gi|18921322|gb|AAL82527.1|AC084766_13 putative ribonucleoprotein [Oryza sativa Japonica Group]
gi|108708430|gb|ABF96225.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|113548692|dbj|BAF12135.1| Os03g0376600 [Oryza sativa Japonica Group]
gi|125586437|gb|EAZ27101.1| hypothetical protein OsJ_11032 [Oryza sativa Japonica Group]
gi|215697052|dbj|BAG91046.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215766568|dbj|BAG98727.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 265
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 85/165 (51%), Gaps = 15/165 (9%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAALN 159
R+ N+P++ + LFEQ G+V +E+ ++ K R+RG FVTM S +E AA+
Sbjct: 87 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEV-IYDKLTGRSRGFGFVTMSSVEEVEAAVE 145
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPP----VQPKPFATFN-LFIANLSFEARAKDLREF 214
Y +GR+L+VN P PP Q P N +++ NLS+ L
Sbjct: 146 QFNGYILDGRSLRVN------SGPPPPREQSSQRAPRGEANRVYVGNLSWGVDNAALANL 199
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
F EG +V+ A+VI+ RS G+GFV++ S + E A+S G
Sbjct: 200 FSGEG-EVLEAKVIYDRESGRSRGFGFVTYGSAEEVENAVSNLDG 243
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 91 TEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMG 149
+ QR R+ N+ W + + LF G VL+ ++ + R+RG FVT G
Sbjct: 170 SSQRAPRGEANRVYVGNLSWGVDNAALANLFSGEGEVLEAKVIYDRESGRSRGFGFVTYG 229
Query: 150 SPDEATAALNNLESYEFEGRTLKVNYAKIK 179
S +E A++NL+ + +GR ++V A+ K
Sbjct: 230 SAEEVENAVSNLDGADMDGRQIRVTVAESK 259
Score = 37.7 bits (86), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 195 FNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAI 254
+F+ NL F + L F G V EVI+ RS G+GFV+ S + E A+
Sbjct: 86 LRVFVGNLPFSVDSAQLAGLFEQAG-SVEMVEVIYDKLTGRSRGFGFVTMSSVEEVEAAV 144
Query: 255 SAFQGKVI 262
F G ++
Sbjct: 145 EQFNGYIL 152
>gi|357137588|ref|XP_003570382.1| PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like
[Brachypodium distachyon]
Length = 305
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 83/165 (50%), Gaps = 6/165 (3%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVTMGSPDEATAA 157
S T+L N+P+ + + + H T +E L + R+RG AFVTM + ++
Sbjct: 131 SATKLYFGNLPYNCDSALLAGIVQDHATPEMVEVLYDRTTGRSRGFAFVTMSTLEDCERV 190
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+ NL+ + GRT++VN A K P P+ P+ LF+ NLS+ + L + F
Sbjct: 191 IKNLDGTLYSGRTMRVNMA--DKPKPKEPLYPE--TEHKLFVGNLSWTVTPEMLTDAFQQ 246
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
G DVV A V++ RS GYGFV + +K+ + AI G I
Sbjct: 247 CG-DVVGARVLYDGETGRSRGYGFVCYSTKEEMDQAIETLNGTEI 290
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
+L N+ WT T E + F+Q G V+ + + R+RG FV + +E A+
Sbjct: 225 KLFVGNLSWTVTPEMLTDAFQQCGDVVGARVLYDGETGRSRGYGFVCYSTKEEMDQAIET 284
Query: 161 LESYEFEGRTLKVNYAKIKK 180
L E EGR ++VN A K+
Sbjct: 285 LNGTEIEGREIRVNLALGKR 304
>gi|357440093|ref|XP_003590324.1| 33 kDa ribonucleoprotein [Medicago truncatula]
gi|355479372|gb|AES60575.1| 33 kDa ribonucleoprotein [Medicago truncatula]
Length = 311
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 94/179 (52%), Gaps = 14/179 (7%)
Query: 90 NTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTM 148
+ Q E RL N+P++ + + LF + G V+ +E+ NR+RG AFVTM
Sbjct: 97 DLNQEAESTQSRRLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTM 156
Query: 149 GSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF--------NLFIA 200
G+ ++A A+ + GR +KVN+ ++ P + + +T+ ++
Sbjct: 157 GNVEDAEEAIRMFDGTTVGGRAIKVNFPEV----PIVGKRVQMGSTYRGYVDSPHKIYAG 212
Query: 201 NLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
NL ++ ++ LR+ F + ++SA+V++ N +S GYGFVSF++ + E A+SA G
Sbjct: 213 NLGWDMTSQYLRKAFAKQ-PGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSAMNG 270
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
LF+ NL F + L + F E +VVS E+++ D RS G+ FV+ + + AE AI
Sbjct: 110 LFVGNLPFSLSSSQLAQLF-GEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEAIRM 168
Query: 257 FQGKVIMCLVIALSY 271
F G + I +++
Sbjct: 169 FDGTTVGGRAIKVNF 183
Score = 38.1 bits (87), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKN-RNRGLAFVTMGSPDEATAALNN 160
++ A N+ W T + +R F + +L ++ N ++RG FV+ + ++ AL+
Sbjct: 208 KIYAGNLGWDMTSQYLRKAFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSA 267
Query: 161 LESYEFEGRTLKVNYAKIKKK 181
+ E +GR L++ A +K
Sbjct: 268 MNGVEVQGRPLRLKLAVDNRK 288
>gi|326516784|dbj|BAJ96384.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 283
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 85/156 (54%), Gaps = 5/156 (3%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYE 165
N+P+ E + LF+Q G V E+ + + ++RG FVTM + +EA A+ Y+
Sbjct: 111 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 170
Query: 166 FEGRTLKVNYAKIKKKNPFPPVQPKPFAT-FNLFIANLSFEARAKDLREFFISEGWDVVS 224
GR L VN A + P P+ FA+ F ++ NL ++A L + F SE +VV+
Sbjct: 171 ISGRLLNVNRAAQRGSRVERP--PRRFASSFRAYVGNLPWQAEDSRLVQMF-SEHGEVVN 227
Query: 225 AEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
A +++ RS G+GFV+ SK+ ++AISA G+
Sbjct: 228 ATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQ 263
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
R N+PW + + +F +HG V++ + + R+RG FVTM S ++ +A++
Sbjct: 200 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 259
Query: 161 LESYEFEGRTLKVNYAKIKKKNPF 184
L+ E +GR L+VN A + + F
Sbjct: 260 LDGQEMDGRPLRVNVAAERPQRGF 283
>gi|15240641|ref|NP_199836.1| chloroplast RNA-binding protein 31B [Arabidopsis thaliana]
gi|9759027|dbj|BAB09396.1| RNA-binding protein-like [Arabidopsis thaliana]
gi|14532488|gb|AAK63972.1| AT5g50250/K6A12_11 [Arabidopsis thaliana]
gi|18655365|gb|AAL76138.1| AT5g50250/K6A12_11 [Arabidopsis thaliana]
gi|332008535|gb|AED95918.1| chloroplast RNA-binding protein 31B [Arabidopsis thaliana]
Length = 289
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 117/261 (44%), Gaps = 29/261 (11%)
Query: 32 SLLQKQQKQHYNYFFPLSSSPFHAYTFPITPKKV---SPFVFHFSATT--------QDPF 80
S+ + + + F LSS P + T + K + SP V S T+ +D
Sbjct: 28 SIFNISSSESHRFNFSLSSRPVN-LTLSLKSKTLRNSSPVVTFVSQTSNWAEEEEGEDGS 86
Query: 81 VDSSSAAAVNTEQREEEYS------KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM 134
+ +S + + E+ + +L N+P+ + + LFEQ GTV E+S
Sbjct: 87 IGGTSVTVDESFESEDGVGFPEPPEEAKLFVGNLPYDVDSQALAMLFEQAGTV---EISE 143
Query: 135 HSKNRN----RGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPK 190
NR+ RG FVTM + +EA A+ S+E GR L VN A + P QP+
Sbjct: 144 VIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRA--APRGSRPERQPR 201
Query: 191 PF-ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKV 249
+ A F +++ NL ++ + L F SE VV A V+ RS G+GFV ++
Sbjct: 202 VYDAAFRIYVGNLPWDVDSGRLERLF-SEHGKVVDARVVSDRETGRSRGFGFVQMSNENE 260
Query: 250 AETAISAFQGKVIMCLVIALS 270
AI+A G+ + I ++
Sbjct: 261 VNVAIAALDGQNLEGRAIKVN 281
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIEL-SMHSKNRNRGLAFVTMGSPDEATAALNN 160
R+ N+PW + LF +HG V+D + S R+RG FV M + +E A+
Sbjct: 208 RIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAA 267
Query: 161 LESYEFEGRTLKVNYAKIKKK 181
L+ EGR +KVN A+ + +
Sbjct: 268 LDGQNLEGRAIKVNVAEERTR 288
>gi|302754352|ref|XP_002960600.1| hypothetical protein SELMODRAFT_25552 [Selaginella moellendorffii]
gi|302771648|ref|XP_002969242.1| hypothetical protein SELMODRAFT_15428 [Selaginella moellendorffii]
gi|300162718|gb|EFJ29330.1| hypothetical protein SELMODRAFT_15428 [Selaginella moellendorffii]
gi|300171539|gb|EFJ38139.1| hypothetical protein SELMODRAFT_25552 [Selaginella moellendorffii]
Length = 197
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 84/178 (47%), Gaps = 19/178 (10%)
Query: 94 REEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSP 151
R E T+L N+ W + + F G + ++E M+ + ++RG AFVT+ +
Sbjct: 11 RSEPAPNTKLYVGNIAWNVDSKMLADCFNGVG-ITELEEVMYDRMLGKSRGFAFVTLSTE 69
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK----------NPFPPVQPKPFATFNLFIAN 201
D A A+ L+ +E EGR L+VNY ++ + P P P F+AN
Sbjct: 70 DAAKTAIEKLDGHELEGRPLRVNYPQVPRGGGGFGGGFGTRPSIPANPA-----KCFVAN 124
Query: 202 LSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ + + L+EFF S G VV ++ RS G GFV+F + A AISA G
Sbjct: 125 IPWSVDDQGLQEFFSSHG-TVVDCRILTDAESGRSRGIGFVTFATPDEANNAISALDG 181
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVTMGSPDEATAALNNLESYE 165
N+PW+ + ++ F HGTV+D L+ R+RG+ FVT +PDEA A++ L+ E
Sbjct: 124 NIPWSVDDQGLQEFFSSHGTVVDCRILTDAESGRSRGIGFVTFATPDEANNAISALDGAE 183
Query: 166 FEGRTLKVNYA 176
GR+++V A
Sbjct: 184 LGGRSIRVALA 194
>gi|238010804|gb|ACR36437.1| unknown [Zea mays]
Length = 262
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 91/169 (53%), Gaps = 8/169 (4%)
Query: 96 EEYSKT-RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPD 152
+E+S+ R+ N+P++ + LFEQ G+V +E+ ++ K R+RG FVTM S +
Sbjct: 75 DEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEV-IYDKLTGRSRGFGFVTMSSVE 133
Query: 153 EATAALNNLESYEFEGRTLKVNYA--KIKKKNPFPPVQPKPFATFNLFIANLSFEARAKD 210
E A++ Y +GR+L+VN + ++ P +P+ A +++ NLS+
Sbjct: 134 EVEVAVDQFNGYVLDGRSLRVNSGPPPPRDRSSRSPQRPRGDAN-RVYVGNLSWGVDNSA 192
Query: 211 LREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
L F SE +V+ A +I+ RS G+GFV++ S + E AIS G
Sbjct: 193 LANLF-SEQGEVLEARIIYDRESGRSRGFGFVTYGSAEEVENAISNLDG 240
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 6/89 (6%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALN 159
R+ N+ W + + LF + G VL+ + + R+RG FVT GS +E A++
Sbjct: 177 NRVYVGNLSWGVDNSALANLFSEQGEVLEARIIYDRESGRSRGFGFVTYGSAEEVENAIS 236
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQ 188
NL+ + +GR ++V A+ K PP Q
Sbjct: 237 NLDGADLDGRQIRVTVAESK-----PPRQ 260
Score = 38.1 bits (87), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 195 FNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAI 254
+F+ NL F + L F G V EVI+ RS G+GFV+ S + E A+
Sbjct: 81 LRVFVGNLPFSVDSAQLAGLFEQAG-SVEMVEVIYDKLTGRSRGFGFVTMSSVEEVEVAV 139
Query: 255 SAFQGKVI 262
F G V+
Sbjct: 140 DQFNGYVL 147
>gi|3550483|emb|CAA11893.1| cp31BHv [Hordeum vulgare subsp. vulgare]
Length = 283
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 84/156 (53%), Gaps = 5/156 (3%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYE 165
N+P+ E + LF+Q G V E+ + + ++RG FVTM + +EA A+ Y
Sbjct: 111 NLPYDVDSERLAQLFDQAGVVEVAEVIYNKESGQSRGFGFVTMSTIEEADKAIETFNRYN 170
Query: 166 FEGRTLKVNYAKIKKKNPFPPVQPKPFAT-FNLFIANLSFEARAKDLREFFISEGWDVVS 224
GR L VN A + P P+ FA+ F ++ NL ++A L + F SE +VV+
Sbjct: 171 ISGRLLNVNRAAQRGSRVERP--PRQFASSFRAYVGNLPWQAEDSRLVQMF-SEHGEVVN 227
Query: 225 AEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
A +++ RS G+GFV+ SK+ ++AISA G+
Sbjct: 228 ATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQ 263
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
R N+PW + + +F +HG V++ + + R+RG FVTM S ++ +A++
Sbjct: 200 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 259
Query: 161 LESYEFEGRTLKVNYAKIKKKNPF 184
L+ E +GR L+VN A + + F
Sbjct: 260 LDGQEMDGRPLRVNVAAERPQRGF 283
>gi|1015370|gb|AAA79045.1| 24 kDa RNA binding protein, partial [Spinacia oleracea]
Length = 220
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 86/163 (52%), Gaps = 8/163 (4%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAALN 159
++ N+P+ ++ LF GTV +E+ ++ K R+RG FVTM S +E AA
Sbjct: 39 KIFVGNLPFNVDSAELAGLFGAAGTVEMVEV-IYDKLTGRSRGFGFVTMSSVEEVEAAAQ 97
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPK--PFATFN-LFIANLSFEARAKDLREFFI 216
+YE +GRTL+V K P V+ + F + N + + NLS++ L+ F
Sbjct: 98 QFNNYELDGRTLRVTEDS-HKDMTLPRVESECDSFGSSNRVHVGNLSWKVDDDALKTLF- 155
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
SE DVV A+VI+ + RS G+GFV++ S TAI + G
Sbjct: 156 SETGDVVEAKVIYDRDTGRSRGFGFVTYNSANEVNTAIESLDG 198
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAA 157
S R+ N+ W + ++ LF + G V++ ++ R+RG FVT S +E A
Sbjct: 133 SSNRVHVGNLSWKVDDDALKTLFSETGDVVEAKVIYDRDTGRSRGFGFVTYNSANEVNTA 192
Query: 158 LNNLESYEFEGRTLKVNYAKIKKK 181
+ +L+ + GR+++V A+ +++
Sbjct: 193 IESLDGVDLNGRSIRVTAAEARQR 216
>gi|224140195|ref|XP_002323470.1| predicted protein [Populus trichocarpa]
gi|222868100|gb|EEF05231.1| predicted protein [Populus trichocarpa]
Length = 273
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 95/187 (50%), Gaps = 9/187 (4%)
Query: 91 TEQREEEYSKT-RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVT 147
++ E+ +S+ +L N+P+ + LFE G V +E+ ++ K R+RG FVT
Sbjct: 79 SDGDEQSFSQDLKLFVGNLPFNVDSARLAGLFETAGNVEMVEV-IYDKVTGRSRGFGFVT 137
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFN----LFIANLS 203
M + +E AA YE +GRTL+VN+ +K P+ TF+ +++ NLS
Sbjct: 138 MTTIEEVEAASKQFNGYELDGRTLRVNFGPPPQKESSFSRGPRGGETFDSGNRVYVGNLS 197
Query: 204 FEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
+ L F +G V+ A+V++ + RS G+GFV++ S + + AI + G +
Sbjct: 198 WNVDNLALETLFREKGR-VMDAKVVYDRDSGRSRGFGFVTYSSAEEVDNAIDSLNGAELD 256
Query: 264 CLVIALS 270
I +S
Sbjct: 257 GRAIRVS 263
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAA 157
S R+ N+ W + + LF + G V+D ++ R+RG FVT S +E A
Sbjct: 187 SGNRVYVGNLSWNVDNLALETLFREKGRVMDAKVVYDRDSGRSRGFGFVTYSSAEEVDNA 246
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPF 184
+++L E +GR ++V+ A+ K + F
Sbjct: 247 IDSLNGAELDGRAIRVSVAEAKPRRQF 273
>gi|357457543|ref|XP_003599052.1| 30S ribosomal protein [Medicago truncatula]
gi|355488100|gb|AES69303.1| 30S ribosomal protein [Medicago truncatula]
Length = 235
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 112/234 (47%), Gaps = 34/234 (14%)
Query: 45 FFPLSSSPFHAYTFPITPKKVSP---------FVFHFSATTQDPFVDSSSAAAVNTEQRE 95
F L+ + H F + PK +P F HF +++ VDS +
Sbjct: 10 FLSLTHNNTHT-NFTLKPKTTTPSSLVVTTRRFRKHFVVSSEQATVDSPALR-------- 60
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDE 153
+L N+P T +++++ + ++HG V E+ M+ K R+R AFVTM + ++
Sbjct: 61 ------KLYVGNIPRTVSNDELEKIVQEHGAVEKAEV-MYDKYSKRSRRFAFVTMKTVED 113
Query: 154 ATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF-----NLFIANLSFEARA 208
A AA L E GR +KVN + PVQ +TF +++ NL+ +
Sbjct: 114 ANAAAEKLNGTEIGGREIKVNITEKPLTTEGLPVQAGE-STFVDSPYKVYVGNLAKNVTS 172
Query: 209 KDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
L++FF SE + +SA+V +S+G+GFV+F S + E AIS+F ++
Sbjct: 173 DSLKKFF-SEKGNALSAKVSRAPGTSKSSGFGFVTFSSDEDVEAAISSFNNALL 225
>gi|226492142|ref|NP_001148607.1| ribonucleoprotein A precursor [Zea mays]
gi|195620768|gb|ACG32214.1| ribonucleoprotein A [Zea mays]
Length = 264
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 88/168 (52%), Gaps = 6/168 (3%)
Query: 96 EEYSKT-RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPD 152
+E+S R+ N+P++ + LFEQ G+V +E+ ++ K R+RG FVTM S +
Sbjct: 77 DEFSDDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEV-IYDKLTGRSRGFGFVTMSSVE 135
Query: 153 EATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFN-LFIANLSFEARAKDL 211
E A++ Y +GR+L+VN ++ P +P N +++ NLS+ L
Sbjct: 136 EVEVAVDQFNGYVLDGRSLRVNSGPPPPRDRSSPSPQRPRGDANRVYVGNLSWGVDNSAL 195
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
F SE +V+ A +I+ RS G+GFV++ S + E AIS G
Sbjct: 196 ANLF-SEQGEVLEARIIYDRESGRSRGFGFVTYGSAEEVENAISNLDG 242
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 6/89 (6%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALN 159
R+ N+ W + + LF + G VL+ + + R+RG FVT GS +E A++
Sbjct: 179 NRVYVGNLSWGVDNSALANLFSEQGEVLEARIIYDRESGRSRGFGFVTYGSAEEVENAIS 238
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQ 188
NL+ + +GR ++V A+ K PP Q
Sbjct: 239 NLDGADLDGRQIRVTVAESK-----PPRQ 262
Score = 37.7 bits (86), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 195 FNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAI 254
+F+ NL F + L F G V EVI+ RS G+GFV+ S + E A+
Sbjct: 83 LRVFVGNLPFSVDSAQLAGLFEQAG-SVEMVEVIYDKLTGRSRGFGFVTMSSVEEVEVAV 141
Query: 255 SAFQGKVI 262
F G V+
Sbjct: 142 DQFNGYVL 149
>gi|388512737|gb|AFK44430.1| unknown [Medicago truncatula]
Length = 291
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 88/172 (51%), Gaps = 4/172 (2%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
+L N P+ E + LF Q GTV E+ + + + +RG FVTM + +EA +A+
Sbjct: 110 KLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMNTVEEAESAVEK 169
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPVQ-PKPFA-TFNLFIANLSFEARAKDLREFFISE 218
Y++ GR+L VN A K P + P+ F +++ANL++E L + F SE
Sbjct: 170 FNGYDYNGRSLVVNKASPKGSRPERTERAPRTFEPVLRIYVANLAWEVDNSRLEQVF-SE 228
Query: 219 GWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALS 270
+VSA V++ RS G+GFV+ + AI+A G+ + I +S
Sbjct: 229 HGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAALDGQSLEGRTIRVS 280
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
R+ N+ W + + +F +HG ++ + + R+RG FVTM E A+
Sbjct: 207 RIYVANLAWEVDNSRLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAA 266
Query: 161 LESYEFEGRTLKVNYAKIKKK 181
L+ EGRT++V+ A+ + +
Sbjct: 267 LDGQSLEGRTIRVSVAEDRPR 287
>gi|414866997|tpg|DAA45554.1| TPA: ribonucleoprotein A [Zea mays]
Length = 262
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 88/168 (52%), Gaps = 6/168 (3%)
Query: 96 EEYSKT-RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPD 152
+E+S R+ N+P++ + LFEQ G+V +E+ ++ K R+RG FVTM S +
Sbjct: 75 DEFSDDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEV-IYDKLTGRSRGFGFVTMSSVE 133
Query: 153 EATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFN-LFIANLSFEARAKDL 211
E A++ Y +GR+L+VN ++ P +P N +++ NLS+ L
Sbjct: 134 EVEVAVDQFNGYVLDGRSLRVNSGPPPPRDRSSPSPQRPRGDANRVYVGNLSWGVDNSAL 193
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
F SE +V+ A +I+ RS G+GFV++ S + E AIS G
Sbjct: 194 ANLF-SEQGEVLEARIIYDRESGRSRGFGFVTYGSAEEVENAISNLDG 240
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 6/89 (6%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALN 159
R+ N+ W + + LF + G VL+ + + R+RG FVT GS +E A++
Sbjct: 177 NRVYVGNLSWGVDNSALANLFSEQGEVLEARIIYDRESGRSRGFGFVTYGSAEEVENAIS 236
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQ 188
NL+ + +GR ++V A+ K PP Q
Sbjct: 237 NLDGADLDGRQIRVTVAESK-----PPRQ 260
Score = 37.7 bits (86), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 195 FNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAI 254
+F+ NL F + L F G V EVI+ RS G+GFV+ S + E A+
Sbjct: 81 LRVFVGNLPFSVDSAQLAGLFEQAG-SVEMVEVIYDKLTGRSRGFGFVTMSSVEEVEVAV 139
Query: 255 SAFQGKVI 262
F G V+
Sbjct: 140 DQFNGYVL 147
>gi|224133740|ref|XP_002321649.1| predicted protein [Populus trichocarpa]
gi|222868645|gb|EEF05776.1| predicted protein [Populus trichocarpa]
Length = 295
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 87/163 (53%), Gaps = 5/163 (3%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAAL 158
+ ++ N+P+ T E + LF+Q GTV E+ +++ + +RG FVTM + +E+ A+
Sbjct: 115 EAKIYVGNLPYDVTSEKLAMLFDQAGTVEISEVIYNTETDTSRGFGFVTMSTVEESDKAI 174
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNP-FPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
Y +GR L VN A + P PP +P ++ +++ NL + + L E F S
Sbjct: 175 EMFNRYNLDGRLLTVNKAAPRGSRPERPPRVSEP--SYRIYVGNLPWGVDSGRLEEVF-S 231
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
E VVSA+V+ RS G+GFV+ S+ AI+A G+
Sbjct: 232 EHGKVVSAQVVSDWETGRSRGFGFVTMSSESELNDAIAALDGQ 274
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIEL-SMHSKNRNRGLAFVTMGSPDEATAALNN 160
R+ N+PW + +F +HG V+ ++ S R+RG FVTM S E A+
Sbjct: 211 RIYVGNLPWGVDSGRLEEVFSEHGKVVSAQVVSDWETGRSRGFGFVTMSSESELNDAIAA 270
Query: 161 LESYEFEGRTLKVNYA 176
L+ E +GR ++VN A
Sbjct: 271 LDGQELDGRAIRVNVA 286
>gi|388508598|gb|AFK42365.1| unknown [Medicago truncatula]
Length = 235
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 112/234 (47%), Gaps = 34/234 (14%)
Query: 45 FFPLSSSPFHAYTFPITPKKVSP---------FVFHFSATTQDPFVDSSSAAAVNTEQRE 95
F L+ + H F + PK +P F HF +++ VDS +
Sbjct: 10 FLSLTHNNTHT-NFTLKPKTTTPSSLVVTTRRFRKHFVVSSEQATVDSPALR-------- 60
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDE 153
+L N+P T +++++ + ++HG V E+ M+ K R+R AFVTM + ++
Sbjct: 61 ------KLYVGNIPRTVSNDELEKIVQEHGAVEKAEV-MYDKYSKRSRRFAFVTMKTVED 113
Query: 154 ATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF-----NLFIANLSFEARA 208
A AA L E GR +KVN + PVQ +TF +++ NL+ +
Sbjct: 114 ANAAAEKLNGTEIGGREIKVNITEKPLTTEGLPVQAGE-STFVDSPYKVYVGNLAKNVTS 172
Query: 209 KDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
L++FF SE + +SA+V +S+G+GFV+F S + E AIS+F ++
Sbjct: 173 DSLKKFF-SEKGNALSAKVSRAPGTSKSSGFGFVTFSSDEDVEAAISSFNNALL 225
>gi|242048440|ref|XP_002461966.1| hypothetical protein SORBIDRAFT_02g011330 [Sorghum bicolor]
gi|241925343|gb|EER98487.1| hypothetical protein SORBIDRAFT_02g011330 [Sorghum bicolor]
Length = 294
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 94/185 (50%), Gaps = 9/185 (4%)
Query: 82 DSSSAAAVNTEQREEEY----SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK 137
D+ A+A ++ EY + ++ N+P+ E + LFEQ G V E+ + +
Sbjct: 93 DAVEASAAVEDEEVGEYVEPPEEAKVYVGNLPYDVDSERLAQLFEQAGVVEVAEVIYNRE 152
Query: 138 -NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK-KKNPFPPVQPKPFATF 195
+R+RG FVTM + +EA A+ L Y+ GR L VN A + + PP Q P +
Sbjct: 153 TDRSRGFGFVTMSTVEEADKAVEMLHRYDVNGRLLTVNKAAPRGSRVDRPPRQSGP--SL 210
Query: 196 NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
+++ NL ++ L + F SE VV A V++ RS G+GFV+ ++ + AI+
Sbjct: 211 RIYVGNLPWQVDDSKLVQMF-SEHGKVVDARVVYDRETGRSRGFGFVTMATQDELDDAIA 269
Query: 256 AFQGK 260
A G+
Sbjct: 270 ALDGQ 274
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
R+ N+PW + +F +HG V+D + + R+RG FVTM + DE A+
Sbjct: 211 RIYVGNLPWQVDDSKLVQMFSEHGKVVDARVVYDRETGRSRGFGFVTMATQDELDDAIAA 270
Query: 161 LESYEFEGRTLKVNYAKIKKKNPF 184
L+ +GR L+VN A+ + + F
Sbjct: 271 LDGQSLDGRALRVNVAEERPRRSF 294
>gi|116787606|gb|ABK24573.1| unknown [Picea sitchensis]
Length = 290
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 81/160 (50%), Gaps = 3/160 (1%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRN-RGLAFVTMGSPDEATAALN 159
T+L N+P+ ++ + LFE G VLD+ + + N RG FVTMG+ +EA +
Sbjct: 113 TKLFVGNLPFNLDNQQLGELFEGAGEVLDVNIITDRETGNSRGFGFVTMGTVEEAEKGVE 172
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEG 219
+ EGR L VN A + P Q +T +++ NL ++A L + F SE
Sbjct: 173 LFNRHSLEGRLLTVNKAAPRGTKVERPSQAGS-STNKIYVGNLPWQADDNSLLQLF-SEH 230
Query: 220 WDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
V+ A V++ RS G+GFV++ S+ AI+A G
Sbjct: 231 GKVLEARVVYDRETGRSRGFGFVTYSSESEVNDAIAALDG 270
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAA 157
S ++ N+PW + + LF +HG VL+ + + R+RG FVT S E A
Sbjct: 205 STNKIYVGNLPWQADDNSLLQLFSEHGKVLEARVVYDRETGRSRGFGFVTYSSESEVNDA 264
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKN 182
+ L+ + +GR L+VN A+ +++
Sbjct: 265 IAALDGTDMDGRPLRVNIAEDRRRG 289
>gi|125544079|gb|EAY90218.1| hypothetical protein OsI_11785 [Oryza sativa Indica Group]
Length = 265
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 86/166 (51%), Gaps = 17/166 (10%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAALN 159
R+ N+P++ + LFEQ G+V +E+ ++ K R+RG FVTM S +E AA+
Sbjct: 87 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEV-IYDKLTGRSRGFGFVTMSSVEEVEAAVE 145
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQ------PKPFATFNLFIANLSFEARAKDLRE 213
Y +GR+L+VN P PP + P+ A +++ NLS+ L
Sbjct: 146 QFNGYILDGRSLRVN------SGPPPPREQSSRRAPRGEAN-RVYVGNLSWGVDNAALAN 198
Query: 214 FFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
F EG +V+ A+VI+ RS G+GFV++ S + E A+S G
Sbjct: 199 LFSGEG-EVLEAKVIYDRESGRSRGFGFVTYGSAEEVENAVSNLDG 243
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 91 TEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMG 149
+ +R R+ N+ W + + LF G VL+ ++ + R+RG FVT G
Sbjct: 170 SSRRAPRGEANRVYVGNLSWGVDNAALANLFSGEGEVLEAKVIYDRESGRSRGFGFVTYG 229
Query: 150 SPDEATAALNNLESYEFEGRTLKVNYAKIK 179
S +E A++NL+ + +GR ++V A+ K
Sbjct: 230 SAEEVENAVSNLDGADMDGRQIRVTVAESK 259
Score = 37.7 bits (86), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 195 FNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAI 254
+F+ NL F + L F G V EVI+ RS G+GFV+ S + E A+
Sbjct: 86 LRVFVGNLPFSVDSAQLAGLFEQAG-SVEMVEVIYDKLTGRSRGFGFVTMSSVEEVEAAV 144
Query: 255 SAFQGKVI 262
F G ++
Sbjct: 145 EQFNGYIL 152
>gi|116788830|gb|ABK25016.1| unknown [Picea sitchensis]
Length = 290
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 81/160 (50%), Gaps = 3/160 (1%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRN-RGLAFVTMGSPDEATAALN 159
T+L N+P+ ++ + LFE G VLD+ + + N RG FVTMG+ +EA +
Sbjct: 113 TKLFVGNLPFNLDNQQLGELFEGAGEVLDVNIITDRETGNSRGFGFVTMGTVEEAEKGVE 172
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEG 219
+ EGR L VN A + P Q +T +++ NL ++A L + F SE
Sbjct: 173 LFNRHSLEGRLLTVNKAAPRGTKVERPSQAGS-STNKIYVGNLPWQADDNSLLQLF-SEH 230
Query: 220 WDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
V+ A V++ RS G+GFV++ S+ AI+A G
Sbjct: 231 GKVLEARVVYDRETGRSRGFGFVTYSSESEVNDAIAALDG 270
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAA 157
S ++ N+PW + + LF +HG VL+ + + R+RG FVT S E A
Sbjct: 205 STNKIYVGNLPWQADDNSLLQLFSEHGKVLEARVVYDRETGRSRGFGFVTYSSESEVNDA 264
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKN 182
+ L+ + +GR L+VN A+ +++
Sbjct: 265 IAALDGTDMDGRPLRVNIAEDRRRG 289
>gi|297799522|ref|XP_002867645.1| RNA-binding protein cp31 [Arabidopsis lyrata subsp. lyrata]
gi|297313481|gb|EFH43904.1| RNA-binding protein cp31 [Arabidopsis lyrata subsp. lyrata]
Length = 305
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 74/264 (28%), Positives = 119/264 (45%), Gaps = 35/264 (13%)
Query: 31 VSLLQKQQKQHYNYFFPLSSSPFHAYTFPITPK---KVSPFVFHFSATTQDPFVDSSSAA 87
VSLL H N PLS S F ++ + K K SPFV F A T D + +
Sbjct: 43 VSLLTG----HIN--LPLSFSRFSRFSLSLKSKTHLKKSPFV-SFVAQTSD-WAEEGGEG 94
Query: 88 AVNTEQREEEYS-------------------KTRLVAQNVPWTSTHEDIRALFEQHGTVL 128
+V E+ E+ + + +L N+ + + + LFEQ GTV
Sbjct: 95 SVAVEENEDSFESQDAEGDVSEGAEFPEPSEEAKLFVGNLAYDVDSQALAMLFEQAGTVE 154
Query: 129 DIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPV 187
E+ + + +++RG FVTM + +EA A+ Y+ GR L VN K + P
Sbjct: 155 IAEVIYNRETDQSRGFGFVTMSTVEEAETAVEKFNRYDLNGRLLTVN--KAAPRGSRPER 212
Query: 188 QPKPFA-TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKS 246
P+ + F +++ NL ++ L + F SE VV A V++ RS G+GFV+ +
Sbjct: 213 APRVYEPAFRVYVGNLPWDVDNGRLEQVF-SEHGKVVEARVVYDRETGRSRGFGFVTMSN 271
Query: 247 KKVAETAISAFQGKVIMCLVIALS 270
+ AI+A G+ + I ++
Sbjct: 272 ENELNDAIAALDGQNMEGRAIRVN 295
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
R+ N+PW + + +F +HG V++ + + R+RG FVTM + +E A+
Sbjct: 222 RVYVGNLPWDVDNGRLEQVFSEHGKVVEARVVYDRETGRSRGFGFVTMSNENELNDAIAA 281
Query: 161 LESYEFEGRTLKVNYAKIKKKNPF 184
L+ EGR ++VN A+ + + F
Sbjct: 282 LDGQNMEGRAIRVNVAEERPRRGF 305
>gi|224091455|ref|XP_002309257.1| predicted protein [Populus trichocarpa]
gi|222855233|gb|EEE92780.1| predicted protein [Populus trichocarpa]
Length = 321
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 85/154 (55%), Gaps = 10/154 (6%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAAL 158
+ +L N+P++ T ++ +FE+ G V E+ +R+RG FVTMGS +EA A+
Sbjct: 112 EGKLYVGNLPYSMTSSELTEVFEEAGRVFSAEVIYDRVTDRSRGFGFVTMGSVEEAKKAI 171
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI--------ANLSFEARAKD 210
+F GR+++VN+ ++ + + P+ + + FI NL + ++
Sbjct: 172 QMFNGTQFGGRSVRVNFPEVPRGGEREVMGPRIQSGYKGFIDSEHKIYAGNLGWRLTSEG 231
Query: 211 LREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSF 244
LR+ F ++ V+SA+VI+ + RRS G+GFVSF
Sbjct: 232 LRDAFANQ-PGVLSAKVIYERDSRRSRGFGFVSF 264
>gi|3550485|emb|CAA11894.1| cp33Hv [Hordeum vulgare subsp. vulgare]
Length = 344
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 90/170 (52%), Gaps = 15/170 (8%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAALN 159
R+ N+P+T T ++ A F + G+V D+++ ++ K +R+RG AFVTM + +EA A+
Sbjct: 109 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQI-IYDKITDRSRGFAFVTMATAEEAAKAVQ 167
Query: 160 NLESYEFEGRTLKVNYAKIKKKN---------PFPPVQPKPFATFNLFIANLSFEARAKD 210
GRT++VN+ ++ + ++ T+ ++ NL + RA
Sbjct: 168 MFNGALLGGRTVRVNFPEVPRGGERAVASAAVARTSLRVVDDGTYKVYAGNLGWGVRADA 227
Query: 211 LREFFISEGW-DVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
L+ F EG +V A VIF + RS G+GFVSF + + A+ A+ A G
Sbjct: 228 LKTAF--EGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDG 275
Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 102 RLVAQNVPWTSTHEDIRALFE-QHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
++ A N+ W + ++ FE Q G V + R+RG FV+ + +A AAL
Sbjct: 213 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 272
Query: 161 LESYEFEGRTLKVNYAKIKKKNP 183
++ E +GR L+++ A +NP
Sbjct: 273 MDGVELDGRPLRLSLA---AQNP 292
>gi|326511132|dbj|BAJ87580.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 344
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 90/170 (52%), Gaps = 15/170 (8%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAALN 159
R+ N+P+T T ++ A F + G+V D+++ ++ K +R+RG AFVTM + +EA A+
Sbjct: 109 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQI-IYDKITDRSRGFAFVTMATAEEAAKAVQ 167
Query: 160 NLESYEFEGRTLKVNYAKIKKKN---------PFPPVQPKPFATFNLFIANLSFEARAKD 210
GRT++VN+ ++ + ++ T+ ++ NL + RA
Sbjct: 168 MFNGALLGGRTVRVNFPEVPRGGERAVASAAVARTSLRVVDDGTYKVYAGNLGWGVRADA 227
Query: 211 LREFFISEGW-DVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
L+ F EG +V A VIF + RS G+GFVSF + + A+ A+ A G
Sbjct: 228 LKTAF--EGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDG 275
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 102 RLVAQNVPWTSTHEDIRALFE-QHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
++ A N+ W + ++ FE Q G V + R+RG FV+ + +A AAL
Sbjct: 213 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 272
Query: 161 LESYEFEGRTLKVNYAKIKKKNP 183
++ E +GR L+++ A +NP
Sbjct: 273 MDGVELDGRPLRLSLA---AQNP 292
>gi|388506424|gb|AFK41278.1| unknown [Lotus japonicus]
Length = 199
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 88/157 (56%), Gaps = 12/157 (7%)
Query: 113 THEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAALNNLESYEFEGRT 170
T + +F + GTV+ +E+ M+ + +R+RG AFVTMGS D+A A+ + + GR
Sbjct: 2 TSSQLTEIFVEAGTVVSVEV-MYDRVTDRSRGFAFVTMGSVDDAKEAIRMFDGSQVGGRI 60
Query: 171 LKVNYAKIKKKNPFPPVQPK--------PFATFNLFIANLSFEARAKDLREFFISEGWDV 222
++VN+ ++ K + PK ++ ++ NL + ++DL++ F +E +
Sbjct: 61 VRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSSQDLKDVF-AEQPGL 119
Query: 223 VSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
VSA+VI+ + RS G+GFV+F++ + E A+ G
Sbjct: 120 VSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNG 156
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALF-EQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAA 157
S ++ A N+ W + +D++ +F EQ G V + R+RG FVT + + AA
Sbjct: 91 SSHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAA 150
Query: 158 LNNLESYEFEGRTLKVNYAKIK 179
L + E +GR L++N A +K
Sbjct: 151 LKTMNGVEVQGRELRLNLAAVK 172
>gi|359806610|ref|NP_001241528.1| uncharacterized protein LOC100820203 [Glycine max]
gi|255645445|gb|ACU23218.1| unknown [Glycine max]
gi|255645775|gb|ACU23380.1| unknown [Glycine max]
Length = 289
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 81/155 (52%), Gaps = 6/155 (3%)
Query: 94 REEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVTMGSPD 152
++ + S T+L N+P++ + L + G+ IE L ++RG AFVTM +
Sbjct: 110 QDSDSSATKLYFGNLPYSVDSAKLAGLIQDFGSAELIEVLYDRDTGKSRGFAFVTMSCIE 169
Query: 153 EATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLR 212
+ A + NL+ EF GRTL+VN++ K P P+ P+ LF+ NLS+ + L
Sbjct: 170 DCNAVIENLDGKEFLGRTLRVNFS--SKPKPKEPLYPE--TEHKLFVGNLSWSVTNEILT 225
Query: 213 EFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSK 247
+ F G VV A V++ RS GYGFV + +K
Sbjct: 226 QAFQEYG-TVVGARVLYDGETGRSRGYGFVCYSTK 259
Score = 40.8 bits (94), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
+L N+ W+ T+E + F+++GTV+ + + R+RG FV + E AAL
Sbjct: 209 KLFVGNLSWSVTNEILTQAFQEYGTVVGARVLYDGETGRSRGYGFVCYSTKAEMEAALAA 268
Query: 161 LESYEFEGRTLKVNYAKIKK 180
L E EGR ++V+ A+ K+
Sbjct: 269 LNDVELEGRAMRVSLAQGKR 288
>gi|357148860|ref|XP_003574918.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like
[Brachypodium distachyon]
Length = 286
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 84/156 (53%), Gaps = 5/156 (3%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYE 165
N+P+ E + LF+Q G V E+ + + ++RG FVTM + +EA A+ Y+
Sbjct: 114 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIEMFNRYD 173
Query: 166 FEGRTLKVNYAKIKKKNPFPPVQPKPFAT-FNLFIANLSFEARAKDLREFFISEGWDVVS 224
GR L VN A + P P+ FA+ F ++ NL ++A L + F SE +V++
Sbjct: 174 ISGRLLNVNRAAQRGSRVERP--PRQFASAFRAYVGNLPWQAEDSRLVQLF-SEHGEVLN 230
Query: 225 AEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
A V++ RS G+GFV+ SK+ + AISA G+
Sbjct: 231 ATVVYDRETGRSRGFGFVTMASKEELDDAISALDGQ 266
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
R N+PW + + LF +HG VL+ + + R+RG FVTM S +E A++
Sbjct: 203 RAYVGNLPWQAEDSRLVQLFSEHGEVLNATVVYDRETGRSRGFGFVTMASKEELDDAISA 262
Query: 161 LESYEFEGRTLKVNYAKIKKKNPF 184
L+ E +GR L+VN A + + F
Sbjct: 263 LDGQELDGRPLRVNVAAERPQRGF 286
>gi|302758260|ref|XP_002962553.1| hypothetical protein SELMODRAFT_26412 [Selaginella moellendorffii]
gi|300169414|gb|EFJ36016.1| hypothetical protein SELMODRAFT_26412 [Selaginella moellendorffii]
Length = 177
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 83/162 (51%), Gaps = 5/162 (3%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIE--LSMHSKNRNRGLAFVTMGSPDEATAAL 158
+R+ N+ W E++ + +Q G + +E + R+RG +VT+ S D A A+
Sbjct: 1 SRIYVGNLSWNCDSEELAKVLQQAGILAHVEEVVCDRETGRSRGFGYVTLTSIDFAQVAV 60
Query: 159 NNLESYEFEGRTLKVNYAK-IKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
L+ + +GR LK +Y++ KK PV+ T +FI NL + L EFF +
Sbjct: 61 QKLDGHIVQGRALKASYSQPYKKAGKEGPVEVAASHT-KVFIGNLPWGVDDGSLEEFFRA 119
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
G VV ++++ + RS G+GFV+ S K A+ A+ + G
Sbjct: 120 HG-KVVEVKIVYDRDTGRSRGFGFVTLSSPKEADEAVKSLDG 160
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAA 157
S T++ N+PW + F HG V+++++ R+RG FVT+ SP EA A
Sbjct: 95 SHTKVFIGNLPWGVDDGSLEEFFRAHGKVVEVKIVYDRDTGRSRGFGFVTLSSPKEADEA 154
Query: 158 LNNLESYEFEGRTLKVNYA 176
+ +L+ + +GR L+V A
Sbjct: 155 VKSLDGADCDGRRLRVKLA 173
>gi|212274649|ref|NP_001130287.1| uncharacterized protein LOC100191381 [Zea mays]
gi|194688754|gb|ACF78461.1| unknown [Zea mays]
gi|414870130|tpg|DAA48687.1| TPA: ribonucleoprotein [Zea mays]
Length = 289
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 92/177 (51%), Gaps = 11/177 (6%)
Query: 92 EQREEEYS------KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLA 144
++ E EY+ + ++ N+P+ E + LF+Q G V E+ + + ++RG
Sbjct: 96 DEGEGEYAAVEPPEEAKVYVGNLPYDIESEGLAQLFDQAGVVEVAEVIYNKETGQSRGFG 155
Query: 145 FVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA-TFNLFIANLS 203
FVTM + +EA A+ Y+ GR L VN A + P P+ FA F ++ NL
Sbjct: 156 FVTMSTIEEADKAIEMFNRYDISGRLLNVNRASPRGTRMERP--PRQFAPAFRAYVGNLP 213
Query: 204 FEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
++A L + F SE +VV+A V++ RS G+GFV+ SK+ + AISA G+
Sbjct: 214 WQADDSRLVQLF-SEYGEVVNAAVVYDRETGRSRGFGFVTMVSKEELDDAISALDGQ 269
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
R N+PW + + LF ++G V++ + + R+RG FVTM S +E A++
Sbjct: 206 RAYVGNLPWQADDSRLVQLFSEYGEVVNAAVVYDRETGRSRGFGFVTMVSKEELDDAISA 265
Query: 161 LESYEFEGRTLKVNYAKIKKKNPF 184
L+ E +GR L+VN A + + F
Sbjct: 266 LDGQELDGRPLRVNVAAERPQRGF 289
>gi|296087572|emb|CBI34828.3| unnamed protein product [Vitis vinifera]
Length = 272
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 94/182 (51%), Gaps = 9/182 (4%)
Query: 95 EEEYSK----TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMG 149
E+ YS+ +L N+P+ E + LF++ G V E+ + + +++RG F+TM
Sbjct: 83 EDTYSEPPEEAKLFVGNLPYDIDSEKLAQLFDEAGVVEIAEVIYNRETDQSRGFGFITMS 142
Query: 150 SPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA-TFNLFIANLSFEARA 208
+ +EA A+ Y+ GR L VN A + P P P+ F +F +++ NL ++
Sbjct: 143 TVEEAEKAVEMFNRYDLNGRFLTVNKAAPRGSRPERP--PQAFEPSFRIYVGNLPWQVDD 200
Query: 209 KDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIA 268
L + F SE VV A V++ + +RS G+GFV+ S+ AI+A G+ + I
Sbjct: 201 ARLEQVF-SEHGKVVDARVVYDRDTQRSRGFGFVTMSSETELNDAIAALDGQSLDGRAIR 259
Query: 269 LS 270
++
Sbjct: 260 VN 261
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAALNN 160
R+ N+PW + +F +HG V+D + R+RG FVTM S E A+
Sbjct: 188 RIYVGNLPWQVDDARLEQVFSEHGKVVDARVVYDRDTQRSRGFGFVTMSSETELNDAIAA 247
Query: 161 LESYEFEGRTLKVNYAKIKKK 181
L+ +GR ++VN A+ + +
Sbjct: 248 LDGQSLDGRAIRVNVAEERPR 268
>gi|302822192|ref|XP_002992755.1| hypothetical protein SELMODRAFT_4991 [Selaginella moellendorffii]
gi|300139400|gb|EFJ06141.1| hypothetical protein SELMODRAFT_4991 [Selaginella moellendorffii]
Length = 177
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 84/162 (51%), Gaps = 5/162 (3%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIE--LSMHSKNRNRGLAFVTMGSPDEATAAL 158
+R+ N+ W E++ + +Q G + +E + R+RG +VT+ S D A A+
Sbjct: 1 SRIYVGNLSWNCDSEELAKVLQQAGILAHVEEVVCDRETGRSRGFGYVTLTSIDFAQVAV 60
Query: 159 NNLESYEFEGRTLKVNYAK-IKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
L+ + +GR LK ++++ KK PV+ T +FI NL + L EFF +
Sbjct: 61 QKLDGHIVQGRALKASFSQPYKKAGKEGPVEVAASHT-KVFIGNLPWGVDDGSLEEFFRA 119
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
G VV A++++ + RS G+GFV+ S K A+ A+ + G
Sbjct: 120 HG-KVVEAKIVYDRDTGRSRGFGFVTLSSPKEADEAVKSLDG 160
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAA 157
S T++ N+PW + F HG V++ ++ R+RG FVT+ SP EA A
Sbjct: 95 SHTKVFIGNLPWGVDDGSLEEFFRAHGKVVEAKIVYDRDTGRSRGFGFVTLSSPKEADEA 154
Query: 158 LNNLESYEFEGRTLKVNYA 176
+ +L+ + +GR L+V A
Sbjct: 155 VKSLDGADCDGRRLRVKLA 173
>gi|357111564|ref|XP_003557582.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like
[Brachypodium distachyon]
Length = 354
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 91/170 (53%), Gaps = 15/170 (8%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAALN 159
R+ N+P+T T ++ ++F + G+V D+++ ++ K +R+RG AFVTM + +EA A+
Sbjct: 122 RIYVGNLPYTFTAAELTSVFSEAGSVDDVQI-IYDKITDRSRGFAFVTMATAEEAAKAVQ 180
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPF---------PPVQPKPFATFNLFIANLSFEARAKD 210
GRT++VN+ ++ + ++ T+ ++ NL + RA
Sbjct: 181 MFNGALLGGRTIRVNFPEVPRGGERAVASAAAAKTSLRVVDDGTYKVYAGNLGWGVRADA 240
Query: 211 LREFFISEGW-DVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
L+ F EG ++ + VIF + RS G+GFVSF++ + A AI A G
Sbjct: 241 LKTAF--EGQPGLLGSRVIFERDTGRSRGFGFVSFQTLEDANAAIQAMDG 288
Score = 38.5 bits (88), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 102 RLVAQNVPWTSTHEDIRALFE-QHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
++ A N+ W + ++ FE Q G + + R+RG FV+ + ++A AA+
Sbjct: 226 KVYAGNLGWGVRADALKTAFEGQPGLLGSRVIFERDTGRSRGFGFVSFQTLEDANAAIQA 285
Query: 161 LESYEFEGRTLKVNYAKIKKKNP 183
++ E +GR L+++ A +NP
Sbjct: 286 MDGVELDGRPLRLSLA---SQNP 305
>gi|19032260|emb|CAD18921.1| RNA-binding protein precursor [Persea americana]
Length = 300
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 89/173 (51%), Gaps = 5/173 (2%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAAL 158
+ +L N+P+ H+ + LF+Q GTV E+ + + +++RG FVTM + +EA A+
Sbjct: 120 EAKLFVGNLPYDVDHQALAELFDQAGTVEVAEVIYNRETDQSRGFGFVTMSTVEEAEKAV 179
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA-TFNLFIANLSFEARAKDLREFFIS 217
Y+ GR L VN A + P P+ F F +++ NL ++ L + F S
Sbjct: 180 EMFNRYDINGRLLTVNKAAPRGARVDRP--PRAFEPAFRMYVGNLPWQVDDARLEQVF-S 236
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALS 270
E VV A V++ RS G+GFV+ ++ + AI+A G+ + I ++
Sbjct: 237 EHGKVVEARVVYDRETGRSRGFGFVTMSTQTELDDAIAALDGQSLDGRAIRVN 289
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
R+ N+PW + +F +HG V++ + + R+RG FVTM + E A+
Sbjct: 216 RMYVGNLPWQVDDARLEQVFSEHGKVVEARVVYDRETGRSRGFGFVTMSTQTELDDAIAA 275
Query: 161 LESYEFEGRTLKVNYAKIKKK 181
L+ +GR ++VN A+ + +
Sbjct: 276 LDGQSLDGRAIRVNVAEDRPR 296
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 7/75 (9%)
Query: 183 PFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFV 242
P PP + K LF+ NL ++ + L E F G V AEVI++ +S G+GFV
Sbjct: 115 PLPPEEAK------LFVGNLPYDVDHQALAELFDQAG-TVEVAEVIYNRETDQSRGFGFV 167
Query: 243 SFKSKKVAETAISAF 257
+ + + AE A+ F
Sbjct: 168 TMSTVEEAEKAVEMF 182
>gi|2330647|emb|CAA74889.1| ribonucleoprotein [Pisum sativum]
gi|10179830|gb|AAG13900.1| 33 kDa ribonucleoprotein [Pisum sativum]
Length = 291
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 86/179 (48%), Gaps = 18/179 (10%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
+L N+P+ E + LFE GTV E+ + + +++RG FVTM + +EA A
Sbjct: 110 KLFVGNLPYDVDSEKLAMLFEPAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAEAGAAK 169
Query: 161 LESYEFEGRTLKVNYAKIKKKN---------PFPPVQPKPFATFNLFIANLSFEARAKDL 211
Y++ GR L VN A + F PV +++ NLS+E L
Sbjct: 170 FNRYDYNGRPLTVNKAAPRGSRPEREERPPRTFEPV-------LRVYVGNLSWELDDSRL 222
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALS 270
+ F SE VVSA V++ RS G+GFV+ +K AI+A G+++ I +S
Sbjct: 223 EQVF-SEHGKVVSARVVYDRETGRSRGFGFVTMSDEKEMNDAIAALDGQILEGRTIKVS 280
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
R+ N+ W + +F +HG V+ + + R+RG FVTM E A+
Sbjct: 207 RVYVGNLSWELDDSRLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEKEMNDAIAA 266
Query: 161 LESYEFEGRTLKVNYAKIKKK 181
L+ EGRT+KV+ A+ + +
Sbjct: 267 LDGQILEGRTIKVSVAEDRPR 287
>gi|115480705|ref|NP_001063946.1| Os09g0565200 [Oryza sativa Japonica Group]
gi|52076131|dbj|BAD46644.1| putative nucleic acid-binding protein [Oryza sativa Japonica Group]
gi|52076138|dbj|BAD46651.1| putative nucleic acid-binding protein [Oryza sativa Japonica Group]
gi|113632179|dbj|BAF25860.1| Os09g0565200 [Oryza sativa Japonica Group]
gi|215697272|dbj|BAG91266.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737486|dbj|BAG96616.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218202645|gb|EEC85072.1| hypothetical protein OsI_32419 [Oryza sativa Indica Group]
gi|222642113|gb|EEE70245.1| hypothetical protein OsJ_30367 [Oryza sativa Japonica Group]
Length = 322
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 85/158 (53%), Gaps = 5/158 (3%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYE 165
N+P+ E + LFEQ G V E+ + + +R+RG FVTM + +EA A+ Y+
Sbjct: 149 NLPYDIDSERLAQLFEQAGIVEVSEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYD 208
Query: 166 FEGRTLKVNYAKIKK-KNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVS 224
+GR L VN A + + PP Q P +F +++ NL ++ L + F SE VV
Sbjct: 209 VDGRLLTVNKAAPRGARVERPPRQFGP--SFRIYVGNLPWQVDDSRLVQLF-SEHGKVVD 265
Query: 225 AEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
A V++ RS G+GFV+ +++ + AI+A G+ +
Sbjct: 266 ARVVYDRETGRSRGFGFVTMATQEELDDAIAALDGQSL 303
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
R+ N+PW + LF +HG V+D + + R+RG FVTM + +E A+
Sbjct: 238 RIYVGNLPWQVDDSRLVQLFSEHGKVVDARVVYDRETGRSRGFGFVTMATQEELDDAIAA 297
Query: 161 LESYEFEGRTLKVNYAK 177
L+ +GR L+VN A+
Sbjct: 298 LDGQSLDGRALRVNVAE 314
>gi|449437482|ref|XP_004136521.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
gi|449528229|ref|XP_004171108.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
Length = 323
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 96/168 (57%), Gaps = 12/168 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAALN 159
+L N+P+ T + +F + G V+ +++ ++ K +R+RG AFVTM + +EA A+
Sbjct: 116 KLYIGNLPYAMTSSQLSEVFAEAGHVVSVQV-IYDKVTDRSRGFAFVTMATLEEAKEAIR 174
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI--------ANLSFEARAKDL 211
+ + GRT++VN+ ++ + + P+ +++N F+ NL + ++ L
Sbjct: 175 MFDGSQIGGRTVRVNFPEVPRGGEKEVMGPRIRSSYNKFVDSPHKIYAGNLGWGLTSQSL 234
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
R+ F ++ ++SA++I+ +S G+GFVSF++ + AE+A+ + G
Sbjct: 235 RDAFENQ-PGILSAKIIYDRASGKSRGFGFVSFETAEDAESALESMNG 281
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAA 157
S ++ A N+ W T + +R FE +L ++ + ++RG FV+ + ++A +A
Sbjct: 216 SPHKIYAGNLGWGLTSQSLRDAFENQPGILSAKIIYDRASGKSRGFGFVSFETAEDAESA 275
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPF 192
L ++ E EGR L++N A + P+ P F
Sbjct: 276 LESMNGVEVEGRPLRLNIAAGQS-----PISPAAF 305
Score = 41.6 bits (96), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
L+I NL + + L E F +E VVS +VI+ RS G+ FV+ + + A+ AI
Sbjct: 117 LYIGNLPYAMTSSQLSEVF-AEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRM 175
Query: 257 FQGKVIMCLVIALSY 271
F G I + +++
Sbjct: 176 FDGSQIGGRTVRVNF 190
>gi|195624584|gb|ACG34122.1| ribonucleoprotein [Zea mays]
Length = 289
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 93/179 (51%), Gaps = 11/179 (6%)
Query: 90 NTEQREEEYS------KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRG 142
+ ++ E EY+ + ++ N+P+ E + LF+Q G V E+ + + ++RG
Sbjct: 94 SGDEGEGEYAAVEPPEEAKVYVGNLPYDIESEGLAQLFDQAGVVEVAEVIYNKETGQSRG 153
Query: 143 LAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA-TFNLFIAN 201
FVTM + +EA A+ Y+ GR L VN A + P P+ FA F ++ N
Sbjct: 154 FGFVTMSTIEEADKAIEMFNRYDISGRLLNVNRASPRGTRMERP--PRQFAPAFRAYVGN 211
Query: 202 LSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
L ++A L + F SE +VV+A V++ RS G+GFV+ SK+ + AISA G+
Sbjct: 212 LPWQADDSRLVQLF-SEYGEVVNAAVVYDRETGRSRGFGFVTMVSKEELDDAISALDGQ 269
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
R N+PW + + LF ++G V++ + + R+RG FVTM S +E A++
Sbjct: 206 RAYVGNLPWQADDSRLVQLFSEYGEVVNAAVVYDRETGRSRGFGFVTMVSKEELDDAISA 265
Query: 161 LESYEFEGRTLKVNYAKIKKKNPF 184
L+ E +GR L+VN A + + F
Sbjct: 266 LDGQELDGRPLRVNVAAERPQRGF 289
>gi|242079661|ref|XP_002444599.1| hypothetical protein SORBIDRAFT_07g024400 [Sorghum bicolor]
gi|241940949|gb|EES14094.1| hypothetical protein SORBIDRAFT_07g024400 [Sorghum bicolor]
Length = 292
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 91/177 (51%), Gaps = 11/177 (6%)
Query: 92 EQREEEYS------KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLA 144
++ E EY+ + ++ N+P+ E + LF+Q G V E+ + + ++RG
Sbjct: 99 DEGEGEYAAVEPPEEAKVYVGNLPYDIDSEGLAQLFDQAGVVEVAEVIYNRETGQSRGFG 158
Query: 145 FVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA-TFNLFIANLS 203
FVTM + +EA A+ Y+ GR L VN A + P P+ FA F ++ NL
Sbjct: 159 FVTMSTIEEADKAIEMFNRYDISGRLLNVNRASPRGTRMERP--PRQFAPAFRAYVGNLP 216
Query: 204 FEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
++ L + F SE +VV+A V++ RS G+GFV+ SK+ + AISA G+
Sbjct: 217 WQVDDSRLVQLF-SEHGEVVNATVVYDRESGRSRGFGFVTMVSKEELDDAISALDGQ 272
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
R N+PW + LF +HG V++ + + R+RG FVTM S +E A++
Sbjct: 209 RAYVGNLPWQVDDSRLVQLFSEHGEVVNATVVYDRESGRSRGFGFVTMVSKEELDDAISA 268
Query: 161 LESYEFEGRTLKVNYAKIKKKNPF 184
L+ E +GR L+VN A + + F
Sbjct: 269 LDGQELDGRPLRVNVAAERPQRGF 292
>gi|116790996|gb|ABK25816.1| unknown [Picea sitchensis]
Length = 248
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 88/167 (52%), Gaps = 8/167 (4%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAALN 159
RL N+P TST+E++ +F + G V E+ M+ K R+R AFVTM + ++A AA+
Sbjct: 74 RLYVGNIPRTSTNEELAKIFGECGNVEKAEV-MYDKYTKRSRRFAFVTMSTVEDAQAAIE 132
Query: 160 NLESYEFEGRTLKVNYAK----IKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFF 215
+ E GR +KVN + + N + + +++ NL+ + L++ F
Sbjct: 133 KMNGTEIGGRVIKVNITEKPLDVSGLNRLTEEAEFIDSPYKVYVGNLAKAVTTETLKKKF 192
Query: 216 ISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
+G +V+ A+V +S GYGFVSF S+ E AISAF V+
Sbjct: 193 AEKG-NVLDAKVTRIPETGKSGGYGFVSFSSEADVEAAISAFNNVVL 238
>gi|99029149|gb|ABF60862.1| GRSF [Lilium longiflorum]
Length = 207
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 86/162 (53%), Gaps = 5/162 (3%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAAL 158
+ +L N+P+ + E + LF++ G V E+ + + +++RG FVTM + +EA A+
Sbjct: 29 QAKLFVGNIPYDDS-EKLANLFDKAGVVEVAEVIYNRETDQSRGFGFVTMSTVEEAERAV 87
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISE 218
L Y+ GR L VN A + P P + P + +++ NL ++ L + F SE
Sbjct: 88 EMLHRYDINGRNLTVNKAAPRGSRPERPRESDP--SLRVYVGNLPWQVDDSRLEQLF-SE 144
Query: 219 GWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
V+ A V++ RS G+GFV+ +++ + AI+A G+
Sbjct: 145 HGKVIDARVVYDRQSGRSRGFGFVTLATREEVDDAIAALDGQ 186
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
R+ N+PW + LF +HG V+D + + R+RG FVT+ + +E A+
Sbjct: 123 RVYVGNLPWQVDDSRLEQLFSEHGKVIDARVVYDRQSGRSRGFGFVTLATREEVDDAIAA 182
Query: 161 LESYEFEGRTLKVNYAK 177
L+ EGR L+VN A+
Sbjct: 183 LDGQSLEGRALRVNVAE 199
>gi|225452270|ref|XP_002270233.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Vitis
vinifera]
Length = 312
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 90/173 (52%), Gaps = 5/173 (2%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAAL 158
+ +L N+P+ E + LF++ G V E+ + + +++RG F+TM + +EA A+
Sbjct: 132 EAKLFVGNLPYDIDSEKLAQLFDEAGVVEIAEVIYNRETDQSRGFGFITMSTVEEAEKAV 191
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA-TFNLFIANLSFEARAKDLREFFIS 217
Y+ GR L VN A + P P P+ F +F +++ NL ++ L + F S
Sbjct: 192 EMFNRYDLNGRFLTVNKAAPRGSRPERP--PQAFEPSFRIYVGNLPWQVDDARLEQVF-S 248
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALS 270
E VV A V++ + +RS G+GFV+ S+ AI+A G+ + I ++
Sbjct: 249 EHGKVVDARVVYDRDTQRSRGFGFVTMSSETELNDAIAALDGQSLDGRAIRVN 301
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAALNN 160
R+ N+PW + +F +HG V+D + R+RG FVTM S E A+
Sbjct: 228 RIYVGNLPWQVDDARLEQVFSEHGKVVDARVVYDRDTQRSRGFGFVTMSSETELNDAIAA 287
Query: 161 LESYEFEGRTLKVNYAKIKKK 181
L+ +GR ++VN A+ + +
Sbjct: 288 LDGQSLDGRAIRVNVAEERPR 308
>gi|149391365|gb|ABR25700.1| chloroplast 28 kDa ribonucleoprotein [Oryza sativa Indica Group]
Length = 186
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 84/156 (53%), Gaps = 5/156 (3%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYE 165
N+P+ E + LFEQ G V E+ + + +R+RG FVTM + +EA A+ Y+
Sbjct: 13 NLPYDIDSERLAQLFEQAGIVEVSEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYD 72
Query: 166 FEGRTLKVNYAKIKK-KNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVS 224
+GR L VN A + + PP Q P +F +++ NL ++ L + F SE VV
Sbjct: 73 VDGRLLTVNKAAPRGARVERPPRQFGP--SFRIYVGNLPWQVDDSRLVQLF-SEHGKVVD 129
Query: 225 AEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
A V++ RS G+GFV+ +++ + AI+A G+
Sbjct: 130 ARVVYDRETGRSRGFGFVTMATQEELDDAIAALDGQ 165
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
R+ N+PW + LF +HG V+D + + R+RG FVTM + +E A+
Sbjct: 102 RIYVGNLPWQVDDSRLVQLFSEHGKVVDARVVYDRETGRSRGFGFVTMATQEELDDAIAA 161
Query: 161 LESYEFEGRTLKVNYAK 177
L+ +GR L+VN A+
Sbjct: 162 LDGQSLDGRALRVNVAE 178
>gi|358248672|ref|NP_001239665.1| uncharacterized protein LOC100790280 [Glycine max]
gi|255644452|gb|ACU22730.1| unknown [Glycine max]
Length = 290
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 92/173 (53%), Gaps = 3/173 (1%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAAL 158
+ +L N+P+ + + LFEQ GTV E+ + + +++RG FVTM + +EA +A+
Sbjct: 108 EAKLFVGNLPYDVDSQKLAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAESAV 167
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPF-ATFNLFIANLSFEARAKDLREFFIS 217
Y+ +GR L VN A + P P + F ++ ++++ NL ++ L++ F
Sbjct: 168 EKFNRYDIDGRLLTVNKASPRGTRPERPPPRRSFESSLSIYVGNLPWDVDNTRLKQIFSK 227
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALS 270
G +VV+A V++ RS G+GFV+ + A++A G+ + I +S
Sbjct: 228 HG-NVVNARVVYDRESGRSRGFGFVTMSDETEMNDAVAALDGESLDGRAIKVS 279
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYE 165
N+PW + ++ +F +HG V++ + + R+RG FVTM E A+ L+
Sbjct: 211 NLPWDVDNTRLKQIFSKHGNVVNARVVYDRESGRSRGFGFVTMSDETEMNDAVAALDGES 270
Query: 166 FEGRTLKVNYAKIKKK 181
+GR +KV+ A+ + +
Sbjct: 271 LDGRAIKVSVAEDRPR 286
>gi|225450219|ref|XP_002265629.1| PREDICTED: 30S ribosomal protein 2, chloroplastic [Vitis vinifera]
gi|297736206|emb|CBI24844.3| unnamed protein product [Vitis vinifera]
Length = 247
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/228 (30%), Positives = 103/228 (45%), Gaps = 52/228 (22%)
Query: 52 PFH---AYTF-PITPKKVSPFVFHFSATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQN 107
PFH + TF I PK+ P SA T + V +S AA RL N
Sbjct: 33 PFHFLNSVTFKAIKPKR--PIAV--SAVTAEAPVATSDVAA------------RRLYVGN 76
Query: 108 VPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAALNNLESYE 165
+P T ++ + E+HG V E+ M+ K R+R AFVTM + ++A AA+ L E
Sbjct: 77 IPRTLDSAELARIVEEHGAVEKAEV-MYDKYSGRSRRFAFVTMKTVEDANAAIEKLNGTE 135
Query: 166 FEGRTLKVNYAKIKKKNPFPPVQPKPFATFNL-----------------FIANLSFEARA 208
GR +KVN + KP T ++ ++ NL+
Sbjct: 136 IGGREIKVN------------ITEKPLLTLDMSLLQAEESQFIDSPHKVYVGNLARTVTT 183
Query: 209 KDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
L +FF +G V+SA+V +S+G+GFVSF S++ E AIS+
Sbjct: 184 DTLTQFFSEKGGKVLSAKVSRVPGTSKSSGFGFVSFSSEEDVEAAISS 231
>gi|296089370|emb|CBI39142.3| unnamed protein product [Vitis vinifera]
Length = 198
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 86/155 (55%), Gaps = 10/155 (6%)
Query: 113 THEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTL 171
T + +F + G+V+ +E+ +R+RG AFVTMGS EA A+ + + GRT+
Sbjct: 2 TSSQLGDVFNEAGSVISVEIVYDRVTDRSRGFAFVTMGSVQEAKEAIRMFDGSQVGGRTV 61
Query: 172 KVNYAKIKKKNPFPPVQPKPFATFNLFI--------ANLSFEARAKDLREFFISEGWDVV 223
KVN+ ++ + + PK +++ F+ NLS+ ++ LR+ F ++ ++
Sbjct: 62 KVNFPEVPRGGERAVMGPKIRSSYRGFVDSPYKIYAGNLSWRLTSEGLRDAF-ADHPGLL 120
Query: 224 SAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ 258
A+VI+ RS G+GF+SF S + AE+A++A
Sbjct: 121 GAKVIYERESGRSRGFGFLSFASAENAESALNAMN 155
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
++ A N+ W T E +R F H +L ++ + R+RG F++ S + A +ALN
Sbjct: 94 KIYAGNLSWRLTSEGLRDAFADHPGLLGAKVIYERESGRSRGFGFLSFASAENAESALNA 153
Query: 161 LESYEFEGRTLKVNYAKIK 179
+ E EGR L++N A ++
Sbjct: 154 MNEVEVEGRPLRLNLAAVR 172
>gi|242046410|ref|XP_002461076.1| hypothetical protein SORBIDRAFT_02g040260 [Sorghum bicolor]
gi|241924453|gb|EER97597.1| hypothetical protein SORBIDRAFT_02g040260 [Sorghum bicolor]
Length = 268
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 80/170 (47%), Gaps = 13/170 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNN 160
+L N+P++ + LFEQ G+V +E+ R+RG FVTM S +EA AA+
Sbjct: 79 KLFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMSSAEEAGAAVEQ 138
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPVQPKPF-----------ATFNLFIANLSFEARAK 209
Y F+GR L+VN ++ P P+ + +++ NL++
Sbjct: 139 FNGYTFQGRPLRVNCGPPPPRDESAPRAPRGGGGGGGGGSFVDSANKVYVGNLAWGVDNS 198
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
L F SE V+ A+VI+ RS G+GFV++ + AIS G
Sbjct: 199 TLENLF-SEQGQVLDAKVIYDRESGRSRGFGFVTYGTAAEVNNAISNLDG 247
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAA 157
S ++ N+ W + + LF + G VLD ++ + R+RG FVT G+ E A
Sbjct: 182 SANKVYVGNLAWGVDNSTLENLFSEQGQVLDAKVIYDRESGRSRGFGFVTYGTAAEVNNA 241
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPF 184
++NL+ + +GR ++V A+ K + F
Sbjct: 242 ISNLDGIDLDGRQIRVTVAESKPRRQF 268
>gi|219885617|gb|ACL53183.1| unknown [Zea mays]
Length = 275
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 84/164 (51%), Gaps = 5/164 (3%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAAL 158
+ ++ N+P+ E + +F+Q G V E+ + + ++RG FVTM + +EA A+
Sbjct: 107 EAKVYVGNLPYDVDSEGLAQIFDQAGVVEVAEVIYNRETGQSRGFGFVTMSTVEEADKAI 166
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA-TFNLFIANLSFEARAKDLREFFIS 217
Y+ GR L VN A + P + FA F ++ NL ++ L + F S
Sbjct: 167 EMFSRYDISGRLLNVNRASSRGTRMERP--QRQFAPAFRAYVGNLPWQVDDSRLVQLF-S 223
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKV 261
E +VV A+V++ RS G+GFVS SK+ AISA G+V
Sbjct: 224 EHGEVVDAKVVYDRETGRSRGFGFVSMVSKEELNDAISALDGQV 267
>gi|133248|sp|P19683.1|ROC4_NICSY RecName: Full=31 kDa ribonucleoprotein, chloroplastic; Flags:
Precursor
gi|19741|emb|CAA40364.1| 31kD chloroplast ribonucleoprotein [Nicotiana sylvestris]
gi|19756|emb|CAA37885.1| unnamed protein product [Nicotiana sylvestris]
Length = 315
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 87/164 (53%), Gaps = 7/164 (4%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKN--RNRGLAFVTMGSPDEATAALN 159
+L N+P+ E + LFEQ G V++I +++++ ++RG FVTM + +EA A+
Sbjct: 137 KLFVGNLPYDVDSEGLARLFEQAG-VVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVE 195
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA-TFNLFIANLSFEARAKDLREFFISE 218
Y+ GR L VN A + + P P P+ F ++ +++ N+ + L + F SE
Sbjct: 196 MYNRYDVNGRLLTVNKAARRGERPERP--PRTFEQSYRIYVGNIPWGIDDARLEQLF-SE 252
Query: 219 GWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
VVSA V++ RS G+GFV+ S+ AI+ G+ +
Sbjct: 253 HGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSL 296
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
R+ N+PW + LF +HG V+ + + R+RG FVTM S E + A+ N
Sbjct: 231 RIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIAN 290
Query: 161 LESYEFEGRTLKVNYAKIK-KKNPF 184
L+ +GRT++VN A+ + ++N F
Sbjct: 291 LDGQSLDGRTIRVNVAEDRSRRNTF 315
>gi|407039916|gb|EKE39893.1| enhancer binding protein-1, putative [Entamoeba nuttalli P19]
Length = 306
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 89/174 (51%), Gaps = 13/174 (7%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKN----RNRGLAFVTM 148
+R E + L +N+P+ T E ++ +F + V + H K +N G+AF+T+
Sbjct: 105 KRTNEVTDNMLFIKNLPFAITEEKLKEMFSKFEVVEITLIKTHRKKGNVTKNNGIAFITV 164
Query: 149 GSPDEATAALNNLESYEFEGRTLKV--NYAKIKKKNPFPPV-QPKPFATFNLFIANLSFE 205
+ +E A+ + ++E EGR + V Y K + K +PK + N+F+ NL F
Sbjct: 165 KTAEEQKKAIAEMNNFEVEGRKITVAAAYKKAENKQTTKKTNEPKSLSETNVFVKNLPFT 224
Query: 206 ARAKDLREFFISEGWDVVSAEVIFHDNPR----RSAGYGFVSFKSKKVAETAIS 255
+ ++ F E +DVV A ++ N + RS GYGFV+FK+ + + AI+
Sbjct: 225 LNDEGFKKLF--EKYDVVEATIVKRHNKKLNVDRSKGYGFVTFKTAEQQKKAIA 276
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 4/82 (4%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK----NRNRGLAFVTMGSPDEA 154
S+T + +N+P+T E + LFE++ V + H+K +R++G FVT + ++
Sbjct: 212 SETNVFVKNLPFTLNDEGFKKLFEKYDVVEATIVKRHNKKLNVDRSKGYGFVTFKTAEQQ 271
Query: 155 TAALNNLESYEFEGRTLKVNYA 176
A+ ++++E EGR + V A
Sbjct: 272 KKAIAEMDNFEVEGRKITVTSA 293
>gi|326523287|dbj|BAJ88684.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 422
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 81/163 (49%), Gaps = 6/163 (3%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVTMGSPDEATAALN 159
T+L N+P+ + + + H +E L + R+RG AFVTM + ++ +
Sbjct: 250 TKLYFGNLPYNCDSALLAGIVQDHAVPEMVEVLYDRTTGRSRGFAFVTMSTLEDCERVIK 309
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEG 219
NL+ + GRT++VN A + P P+ P+ LF+ NLS+ + L + F G
Sbjct: 310 NLDGTLYSGRTMRVNMA--DRPKPKAPLYPE--TEHKLFVGNLSWTVTPEMLTDAFQRCG 365
Query: 220 WDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
+VV A V++ RS GYGFV + +K+ + AI G I
Sbjct: 366 -NVVGARVLYDGETGRSRGYGFVCYSTKEEMDQAIETLNGTEI 407
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
+L N+ WT T E + F++ G V+ + + R+RG FV + +E A+
Sbjct: 342 KLFVGNLSWTVTPEMLTDAFQRCGNVVGARVLYDGETGRSRGYGFVCYSTKEEMDQAIET 401
Query: 161 LESYEFEGRTLKVNYAKIKK 180
L E EGR ++VN A K+
Sbjct: 402 LNGTEIEGREIRVNLALGKR 421
>gi|242063480|ref|XP_002453029.1| hypothetical protein SORBIDRAFT_04g037020 [Sorghum bicolor]
gi|241932860|gb|EES06005.1| hypothetical protein SORBIDRAFT_04g037020 [Sorghum bicolor]
Length = 295
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 79/154 (51%), Gaps = 6/154 (3%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVTMGSPDEATAALNNLESYE 165
N+P+ + + +++ + +E L R+RG AFVTM + + + NL+
Sbjct: 130 NLPYNCDSAQLAGIVQEYASPEMVEVLYDRITGRSRGFAFVTMTTVQDCELVIKNLDGSL 189
Query: 166 FEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSA 225
+ GRT+KVN+A P P + P LF+ NLS+ ++ L E F G +VV A
Sbjct: 190 YGGRTMKVNFA----DRPKPKLPLYPETEHKLFVGNLSWTVTSEMLTEAFGRCG-NVVGA 244
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
V++ RS GYGFV + +K+ + AIS+ G
Sbjct: 245 RVLYDGETGRSRGYGFVCYSTKEEMDEAISSLNG 278
Score = 44.7 bits (104), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
+L N+ WT T E + F + G V+ + + R+RG FV + +E A+++
Sbjct: 216 KLFVGNLSWTVTSEMLTEAFGRCGNVVGARVLYDGETGRSRGYGFVCYSTKEEMDEAISS 275
Query: 161 LESYEFEGRTLKVNYAKIKK 180
L E EGR ++VN A K
Sbjct: 276 LNGTELEGREIRVNLALGNK 295
>gi|357160118|ref|XP_003578663.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like
[Brachypodium distachyon]
Length = 296
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 82/157 (52%), Gaps = 2/157 (1%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYE 165
N+P+ E + LFEQ G V E+ + + +++RG FVTM + +EA A+ Y+
Sbjct: 123 NLPYDIDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMFHRYD 182
Query: 166 FEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSA 225
GR L VN A + P + ++F +++ NL ++ L + F SE VV A
Sbjct: 183 VGGRLLTVNKAAPRGARVERPARDFGGSSFRIYVGNLPWQVDDSRLVQLF-SEHGKVVDA 241
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
V++ RS G+GFV+ S++ + AI+A G+ +
Sbjct: 242 RVVYDRETGRSRGFGFVTMASQEELDDAIAALDGQSL 278
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 86 AAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLA 144
A V R+ S R+ N+PW + LF +HG V+D + + R+RG
Sbjct: 197 GARVERPARDFGGSSFRIYVGNLPWQVDDSRLVQLFSEHGKVVDARVVYDRETGRSRGFG 256
Query: 145 FVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177
FVTM S +E A+ L+ EGR L+VN A+
Sbjct: 257 FVTMASQEELDDAIAALDGQSLEGRALRVNVAE 289
>gi|326487400|dbj|BAJ89684.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326511469|dbj|BAJ87748.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326511763|dbj|BAJ92026.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326514088|dbj|BAJ92194.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326527877|dbj|BAJ88990.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326534068|dbj|BAJ89384.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 306
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 81/163 (49%), Gaps = 6/163 (3%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVTMGSPDEATAALN 159
T+L N+P+ + + + H +E L + R+RG AFVTM + ++ +
Sbjct: 134 TKLYFGNLPYNCDSALLAGIVQDHAVPEMVEVLYDRTTGRSRGFAFVTMSTLEDCERVIK 193
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEG 219
NL+ + GRT++VN A + P P+ P+ LF+ NLS+ + L + F G
Sbjct: 194 NLDGTLYSGRTMRVNMA--DRPKPKAPLYPE--TEHKLFVGNLSWTVTPEMLTDAFQRCG 249
Query: 220 WDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
+VV A V++ RS GYGFV + +K+ + AI G I
Sbjct: 250 -NVVGARVLYDGETGRSRGYGFVCYSTKEEMDQAIETLNGTEI 291
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
+L N+ WT T E + F++ G V+ + + R+RG FV + +E A+
Sbjct: 226 KLFVGNLSWTVTPEMLTDAFQRCGNVVGARVLYDGETGRSRGYGFVCYSTKEEMDQAIET 285
Query: 161 LESYEFEGRTLKVNYAKIKK 180
L E EGR ++VN A K+
Sbjct: 286 LNGTEIEGREIRVNLALGKR 305
>gi|168274276|dbj|BAG09558.1| chloroplast RNA binding protein [Mesembryanthemum crystallinum]
Length = 306
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 95/193 (49%), Gaps = 9/193 (4%)
Query: 84 SSAAAVNTEQREEEYSK----TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-N 138
S + E+ E+ +S+ +L N+P+ E + +F+ G V E+ + + +
Sbjct: 107 SGVGNEDEEESEQGFSEPPEEAKLFVGNLPYDVDSERLAQIFDGAGVVEIAEVIYNRETD 166
Query: 139 RNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA-TFNL 197
R+RG FVTM + +EA A+ L ++ GR L VN A + P P P+ F + +
Sbjct: 167 RSRGFGFVTMSTVEEAEKAVEMLNGFDMNGRLLTVNKAAPRGSRPERP--PREFEPSCRV 224
Query: 198 FIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAF 257
++ NL ++ L + F SE V+SA V+ RS G+GFVS S+ AI+A
Sbjct: 225 YVGNLPWDVDNARLEQVF-SEHGKVLSARVVSDRETGRSRGFGFVSMASESEMNDAIAAL 283
Query: 258 QGKVIMCLVIALS 270
G+ + I ++
Sbjct: 284 DGQTLDGRAIRVN 296
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIEL-SMHSKNRNRGLAFVTMGSPDEATAALNN 160
R+ N+PW + + +F +HG VL + S R+RG FV+M S E A+
Sbjct: 223 RVYVGNLPWDVDNARLEQVFSEHGKVLSARVVSDRETGRSRGFGFVSMASESEMNDAIAA 282
Query: 161 LESYEFEGRTLKVNYAKIKKKNPF 184
L+ +GR ++VN A+ + + F
Sbjct: 283 LDGQTLDGRAIRVNVAEERPRRAF 306
>gi|162463757|ref|NP_001105347.1| nucleic acid binding protein1 [Zea mays]
gi|168526|gb|AAA33486.1| nucleic acid-binding protein [Zea mays]
gi|195637380|gb|ACG38158.1| ribonucleoprotein [Zea mays]
gi|219884029|gb|ACL52389.1| unknown [Zea mays]
gi|414884557|tpg|DAA60571.1| TPA: nucleic acid binding protein1 [Zea mays]
Length = 303
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 84/163 (51%), Gaps = 5/163 (3%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAAL 158
+ ++ N+P+ E + LF+Q G V E+ + + +++RG FVTM + +EA A+
Sbjct: 124 EAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRETDQSRGFGFVTMSTVEEAEKAV 183
Query: 159 NNLESYEFEGRTLKVNYAKIK-KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
Y+ GR L VN A + + PP Q P + +++ NL ++ L E F S
Sbjct: 184 EMFHRYDVNGRLLTVNKAAPRGSRVDRPPRQSGP--SLRIYVGNLPWQVDDSRLVELF-S 240
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
E VV A V++ RS G+GFV+ S+ + AI+A G+
Sbjct: 241 EHGKVVDARVVYDRETGRSRGFGFVTMASQDELDDAIAALDGQ 283
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
R+ N+PW + LF +HG V+D + + R+RG FVTM S DE A+
Sbjct: 220 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRETGRSRGFGFVTMASQDELDDAIAA 279
Query: 161 LESYEFEGRTLKVNYAKIKKKNPF 184
L+ +GR L+VN A+ + + F
Sbjct: 280 LDGQSLDGRALRVNVAEERPRRGF 303
>gi|413939453|gb|AFW74004.1| hypothetical protein ZEAMMB73_282165 [Zea mays]
Length = 287
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 82/162 (50%), Gaps = 6/162 (3%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVTMGSPDEATAA 157
+ T+L N+P+ + + +++ + +E L + R+RG AFVTM + +
Sbjct: 114 TTTKLYFGNLPYNCDSAQLAGIVQEYASPEMVEVLYDRTTGRSRGFAFVTMTTVQDCELV 173
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+ NL+ + GRT+KVN+A P P P LF+ NLS+ ++ L E F
Sbjct: 174 IKNLDGSLYGGRTMKVNFA----DRPKPKQALYPETEHKLFVGNLSWTVTSEMLTEAFGR 229
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
G VV A V++ RS GYGFV + +++ + A+S+ G
Sbjct: 230 CG-TVVGARVLYDGETGRSRGYGFVCYSTREEMDEALSSLNG 270
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
+L N+ WT T E + F + GTV+ + + R+RG FV + +E AL++
Sbjct: 208 KLFVGNLSWTVTSEMLTEAFGRCGTVVGARVLYDGETGRSRGYGFVCYSTREEMDEALSS 267
Query: 161 LESYEFEGRTLKVNYAKIKK 180
L E EGR ++VN A KK
Sbjct: 268 LNGMEMEGREMRVNLALGKK 287
>gi|168029395|ref|XP_001767211.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681466|gb|EDQ67892.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 192
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 86/171 (50%), Gaps = 14/171 (8%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
+L N+PW + + ++ G+V +E+ + R+RG AFVTM + ++A +
Sbjct: 1 KLYIGNLPWQCDSAQLAGICQEFGSVELVEVIYDQESGRSRGFAFVTMATQEDAENVIER 60
Query: 161 LESYEFEGRTLKVNYAKIKKKNP-FPPVQ--------PKPFATFN---LFIANLSFEARA 208
L+ ++ GR LKV++ + K+ P FP + P+P A + +F+ NLS+
Sbjct: 61 LDGHDVGGRPLKVSFPQSKQNRPSFPRGEGYQRSERAPRPAARDDPNKVFVGNLSWGVDN 120
Query: 209 KDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
L+E F G VV A V++ RS G+GFV++ + AI + G
Sbjct: 121 GALQELFSDYG-KVVDARVVYDRESGRSRGFGFVTYSDVSEVDAAIDSLDG 170
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALN 159
++ N+ W + ++ LF +G V+D + + R+RG FVT E AA++
Sbjct: 107 NKVFVGNLSWGVDNGALQELFSDYGKVVDARVVYDRESGRSRGFGFVTYSDVSEVDAAID 166
Query: 160 NLESYEFEGRTLKVNYAKIK 179
+L+ EF+GR L+VN A K
Sbjct: 167 SLDGAEFDGRELRVNLAGNK 186
>gi|219363077|ref|NP_001137027.1| uncharacterized protein LOC100217196 [Zea mays]
gi|194698058|gb|ACF83113.1| unknown [Zea mays]
Length = 287
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 82/162 (50%), Gaps = 6/162 (3%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVTMGSPDEATAA 157
+ T+L N+P+ + + +++ + +E L + R+RG AFVTM + +
Sbjct: 114 TTTKLYFGNLPYNCDSAQLAGIVQEYASPEMVEVLYDRTTGRSRGFAFVTMTTVQDCELV 173
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+ NL+ + GRT+KVN+A P P P LF+ NLS+ ++ L E F
Sbjct: 174 IKNLDGSLYGGRTMKVNFA----DRPKPKQALYPETEHKLFVGNLSWTVTSEMLTEAFGR 229
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
G VV A V++ RS GYGFV + +++ + A+S+ G
Sbjct: 230 CG-TVVGARVLYDGETGRSRGYGFVCYSTREEMDEALSSLNG 270
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
+L N+ WT T E + F + GTV+ + + R+RG FV + +E AL++
Sbjct: 208 KLFVGNLSWTVTSEMLTEAFGRCGTVVGARVLYDGETGRSRGYGFVCYSTREEMDEALSS 267
Query: 161 LESYEFEGRTLKVNYAKIKK 180
L E EGR ++VN A KK
Sbjct: 268 LNGMEMEGREMRVNLALGKK 287
>gi|388508864|gb|AFK42498.1| unknown [Medicago truncatula]
Length = 300
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 85/169 (50%), Gaps = 7/169 (4%)
Query: 95 EEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDE 153
EE ++ N+P+ E + LFEQ GTV E+ + +R+RG FVTM + +E
Sbjct: 116 EEPSEDLKIFVGNLPFDVDSEKLAQLFEQSGTVEIAEVIYNRDTDRSRGFGFVTMSTSEE 175
Query: 154 ATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPV-QPKPF-ATFNLFIANLSFEARAKDL 211
A+N +E +GR L VN A + P + QP+ F + ++ NL ++ L
Sbjct: 176 VERAVNKFSGFELDGRLLTVNNAAPRGT---PRLRQPRTFNSGLRAYVGNLPWDVDNSSL 232
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
+ F SE V SA+V++ R G+GFV+ ++ AI+A G+
Sbjct: 233 EQLF-SEHGKVESAQVVYDRETGRLRGFGFVTMSNEAEMNDAIAALDGQ 280
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAA 157
S R N+PW + + LF +HG V ++ + R RG FVTM + E A
Sbjct: 214 SGLRAYVGNLPWDVDNSSLEQLFSEHGKVESAQVVYDRETGRLRGFGFVTMSNEAEMNDA 273
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPF 184
+ L+ F GR ++VN A+ + + F
Sbjct: 274 IAALDGQSFNGRAIRVNVAEERPRRSF 300
>gi|34555648|gb|AAQ74972.1| flowering time control protein isoform OsFCA-2 [Oryza sativa Indica
Group]
Length = 649
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 84/167 (50%), Gaps = 13/167 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALN 159
+L +VP T+T +D+R LFE+HG V+++ L K +G FV + +EA A+
Sbjct: 122 VKLFIGSVPRTATEDDVRPLFEEHGDVVEVALIKDRKTGEQQGCCFVKYATSEEAERAIR 181
Query: 160 NLES-YEFEGRT--LKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFI 216
L + Y G ++V YA +++ LF+A+L+ +A AK++ E F
Sbjct: 182 ALHNQYTLPGAMGPIQVRYADGERER-------HGAIEHKLFVASLNKQATAKEIEEIFA 234
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
G V I D R+S G GFV F S++ A A+SA G +M
Sbjct: 235 PYGH--VEDVYIMKDGMRQSRGCGFVKFSSREPALAAMSALSGNYVM 279
>gi|255540443|ref|XP_002511286.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
gi|223550401|gb|EEF51888.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
Length = 319
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 88/171 (51%), Gaps = 5/171 (2%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
++ N+P+ + + LFEQ GTV E+ + + + +RG FV+M + +EA A+
Sbjct: 142 KIFVGNLPYDVDSQKLAMLFEQAGTVEIAEVIYNRETDTSRGFGFVSMSTVEEAEKAVEM 201
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA-TFNLFIANLSFEARAKDLREFFISEG 219
++ +GR L VN A + P P P+ F + +++ NL ++ L + F SE
Sbjct: 202 FHRHDLDGRLLTVNKAAPRGSRPERP--PRVFEPGYRIYVGNLPWDVDNARLEQIF-SEH 258
Query: 220 WDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALS 270
VV A V++ + RS G+GFV+ ++ AI+A G+ + I ++
Sbjct: 259 GKVVDARVVYDRDTGRSRGFGFVTMSTETELNDAIAALDGRSLDGRAIRVN 309
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAALNN 160
R+ N+PW + + +F +HG V+D + R+RG FVTM + E A+
Sbjct: 236 RIYVGNLPWDVDNARLEQIFSEHGKVVDARVVYDRDTGRSRGFGFVTMSTETELNDAIAA 295
Query: 161 LESYEFEGRTLKVNYAKIKKKNPF 184
L+ +GR ++VN A+ + + F
Sbjct: 296 LDGRSLDGRAIRVNVAEQRPRRNF 319
>gi|681908|dbj|BAA06521.1| RNA-binding protein cp31 [Arabidopsis thaliana]
Length = 304
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 84/173 (48%), Gaps = 5/173 (2%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAAL 158
+ +L N+ + + + LFEQ GTV E+ + + +++RG FVTM S DEA A+
Sbjct: 124 EAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAV 183
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA-TFNLFIANLSFEARAKDLREFFIS 217
Y+ GR L VN K + P P+ + F +++ NL ++ L + F S
Sbjct: 184 EKFNRYDLNGRLLTVN--KAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLF-S 240
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALS 270
E VV A V++ RS G+GFV+ AISA G+ + I ++
Sbjct: 241 EHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVN 293
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
R+ N+PW + + LF +HG V++ + + R+RG FVTM DE A++
Sbjct: 220 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 279
Query: 161 LESYEFEGRTLKVNYAK 177
L+ EGR ++VN A+
Sbjct: 280 LDGQNLEGRAIRVNVAE 296
>gi|242078001|ref|XP_002443769.1| hypothetical protein SORBIDRAFT_07g001610 [Sorghum bicolor]
gi|241940119|gb|EES13264.1| hypothetical protein SORBIDRAFT_07g001610 [Sorghum bicolor]
Length = 308
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 84/157 (53%), Gaps = 10/157 (6%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR-NRGLAFVTMGSPDEATAALNNLESYE 165
N+P +D+ LF HGTVL +E+S ++ +RG AFVTM S EA A+N L+ +E
Sbjct: 129 NLPRRCDVQDLLQLFTPHGTVLSVEISRDAETGISRGTAFVTMRSLAEARTAINALDGFE 188
Query: 166 FEGRTLKVNYAK---IKKKNP----FPPVQPKPFAT-FNLFIANLSFEARAKDLREFFIS 217
+GR + V A +KN P++ F + +++ NL++ + +DLRE F
Sbjct: 189 LDGREVFVKLASDVISNRKNVNLAHITPMKDHIFESPHKVYVGNLAWSVQPQDLRELFTQ 248
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAI 254
G VVS ++ R+ YGF+SF S + E A+
Sbjct: 249 CG-TVVSTRLLTDRKGGRNRVYGFLSFSSAEELEAAL 284
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYE 165
N+ W+ +D+R LF Q GTV+ L K RNR F++ S +E AAL L+
Sbjct: 232 NLAWSVQPQDLRELFTQCGTVVSTRLLTDRKGGRNRVYGFLSFSSAEELEAAL-KLDRTV 290
Query: 166 FEGRTLKVNYAKIKKK 181
F GR + V A ++++
Sbjct: 291 FFGRDIVVKEAIVERQ 306
>gi|449436259|ref|XP_004135910.1| PREDICTED: 30S ribosomal protein 2, chloroplastic-like [Cucumis
sativus]
gi|449489082|ref|XP_004158209.1| PREDICTED: 30S ribosomal protein 2, chloroplastic-like [Cucumis
sativus]
Length = 251
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 93/178 (52%), Gaps = 10/178 (5%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGS 150
Q ++ +L N+P +E++ + ++HG V E+ M+ K R+R AFVTM +
Sbjct: 66 QGASSVAERKLYIGNIPRNVNNEELTRIVQEHGAVEKAEV-MYDKYSGRSRRFAFVTMKT 124
Query: 151 PDEATAALNNLESYEFEGRTLKVNYAKIKKKN----PFPPVQPKPF--ATFNLFIANLSF 204
++A AA+ L E GR +KVN + N F + F + + +++ N+S
Sbjct: 125 VEDANAAIEKLNETEVGGRKIKVNITEKPVVNTVDMSFLQAEESQFIDSPYKVYVGNISS 184
Query: 205 EARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
+ L+ FF SE V+SA+V +S+GYGFV+F S++ + AIS+F ++
Sbjct: 185 TVSTETLKNFF-SEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVDAAISSFNNALL 241
Score = 41.2 bits (95), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 54/102 (52%), Gaps = 1/102 (0%)
Query: 76 TQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELS-M 134
T+ P V++ + + E+ + S ++ N+ T + E ++ F + G VL ++S +
Sbjct: 150 TEKPVVNTVDMSFLQAEESQFIDSPYKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRV 209
Query: 135 HSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176
+++ G FVT S +E AA+++ + EG+ ++VN A
Sbjct: 210 PGTSKSSGYGFVTFSSEEEVDAAISSFNNALLEGQPIRVNKA 251
>gi|681906|dbj|BAA06520.1| RNA-binding protein cp31 [Arabidopsis thaliana]
Length = 314
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 82/170 (48%), Gaps = 5/170 (2%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAAL 158
+ +L N+ + + + LFEQ GTV E+ + + +++RG FVTM S DEA A+
Sbjct: 134 EAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAV 193
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA-TFNLFIANLSFEARAKDLREFFIS 217
Y+ GR L VN K + P P+ + F +++ NL ++ L + F S
Sbjct: 194 EKFNRYDLNGRLLTVN--KAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLF-S 250
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVI 267
E VV A V++ RS G+GFV+ AISA G+ + I
Sbjct: 251 EHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAI 300
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
R+ N+PW + + LF +HG V++ + + R+RG FVTM DE A++
Sbjct: 230 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 289
Query: 161 LESYEFEGRTLKVNYAK 177
L+ EGR ++VN A+
Sbjct: 290 LDGQNLEGRAIRVNVAE 306
>gi|255548039|ref|XP_002515076.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
gi|223545556|gb|EEF47060.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
Length = 281
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 96/175 (54%), Gaps = 16/175 (9%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR-NRGLAFVTMGSPDEATAALNNL 161
L N+P + ++ LF+ +GTV+ +E+S + + +RG FVTMGS + A A+ L
Sbjct: 100 LYVCNLPRSCDIAELVELFKPYGTVISVEVSRNPETGISRGCGFVTMGSINSAKNAIAAL 159
Query: 162 ESYEFEGRTLKVNYA---KIKKKNPFPPVQPKPF------ATFNLFIANLSFEARAKDLR 212
+ + GR ++V ++ ++NP P+ P + F +++ NL++ + ++LR
Sbjct: 160 DGSDIGGREMRVKFSVDMNSGRRNP-EPLSSAPTKNLFYESPFKVYVGNLAWTVKPEELR 218
Query: 213 EFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS----AFQGKVIM 263
+ F G VVSA V++ ++ YGF+SF S K + A+S F+G++++
Sbjct: 219 DQFSKFG-TVVSARVLYDRKAGKNRAYGFLSFSSTKERDAALSFNGKDFRGRILV 272
>gi|75275079|sp|P82277.1|RRP2_SPIOL RecName: Full=30S ribosomal protein 2, chloroplastic; AltName:
Full=Plastid-specific 30S ribosomal protein 2;
Short=PSRP-2; Flags: Precursor
gi|7578881|gb|AAF64167.1|AF240462_1 plastid-specific ribosomal protein 2 precursor [Spinacia oleracea]
Length = 260
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 86/175 (49%), Gaps = 23/175 (13%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAALN 159
RL N+P ++++R + E+HG + +I M+ K R+R FVTM + ++A A +
Sbjct: 85 RLYVGNIPRNLNNDELRTIVEEHGAI-EIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIE 143
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFAT------------FNLFIANLSFEAR 207
L E GR +KVN + P++ AT + ++I NL+
Sbjct: 144 KLNDTEIGGRKIKVNITE-------KPLEGMDIATTQAEDSQFVESPYKVYIGNLAKTVT 196
Query: 208 AKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
+ L++FF SE V+ A+V +S G+GFVSF S++ E AI A V+
Sbjct: 197 NELLKDFF-SEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALNNSVL 250
>gi|3550467|emb|CAA06469.1| cp31AHv protein [Hordeum vulgare subsp. vulgare]
Length = 294
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 84/156 (53%), Gaps = 5/156 (3%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYE 165
N+P+ E + LFEQ G V E+ + + +++RG FVTM + +EA A+ Y+
Sbjct: 122 NLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMFHRYD 181
Query: 166 FEGRTLKVNYAKIKK-KNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVS 224
GR L VN A + + PP ++F +++ NL ++ L E F SE VV
Sbjct: 182 VNGRLLTVNKAAPRGARVERPPRDSG--SSFRIYVGNLPWQVDDSRLVELF-SEHGKVVD 238
Query: 225 AEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
A+V++ + RS G+GFV+ S++ + AI+A G+
Sbjct: 239 AKVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQ 274
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAALNN 160
R+ N+PW + LF +HG V+D ++ R+RG FVTM S +E A+
Sbjct: 211 RIYVGNLPWQVDDSRLVELFSEHGKVVDAKVVYDRDTGRSRGFGFVTMASQEELDDAIAA 270
Query: 161 LESYEFEGRTLKVNYAK 177
L+ EGR L+VN A+
Sbjct: 271 LDGQSLEGRALRVNVAE 287
>gi|340383337|ref|XP_003390174.1| PREDICTED: ELAV-like protein 3-like [Amphimedon queenslandica]
Length = 392
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 84/175 (48%), Gaps = 17/175 (9%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIEL-SMHSKNRNRGLAFVTMGSP 151
Q E +KT L+ +P T T E ++ LF Q G VL +L S + G FV GS
Sbjct: 16 QNPETKAKTNLIVNYLPQTLTEEGLKQLFSQFGVVLSCKLIKDKSSGISLGYGFVNYGSA 75
Query: 152 DEATAALNNLESYEFEGRTLKVNYAK---IKKKNPFPPVQPKPFATFNLFIANLSFEARA 208
+EA A+ + E +TLKV+YA+ + KN N+++ANL +
Sbjct: 76 EEAEHAIQKMNGTTLESKTLKVSYARPSSVAIKN------------ANVYVANLPPQLSL 123
Query: 209 KDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
+L F G +++++V+ ++ G GFV F AE AI+A GK ++
Sbjct: 124 TELDALFQPYGT-IITSKVLTDEDTGAGRGVGFVRFDKYTQAEVAIAALNGKQLV 177
>gi|255544262|ref|XP_002513193.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
gi|223547691|gb|EEF49184.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
Length = 256
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 89/180 (49%), Gaps = 33/180 (18%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAALN 159
RL N+P T ++++ + E+HG V E+ M+ K R+R AFVTM + ++A A +
Sbjct: 81 RLYIGNIPRTVDNDELTKIVEEHGAVEKAEV-MYDKYSGRSRRFAFVTMRTVEDANAVIE 139
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNL-----------------FIANL 202
L + GR +KVN + KP A+ +L ++ NL
Sbjct: 140 KLNGTQIGGREIKVN------------ITEKPLASGDLSFLQLEESQFVDSPHKVYVGNL 187
Query: 203 SFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
+ ++ L+ FF SE V+SA+V +S+GYGFVSF ++ E AIS+F ++
Sbjct: 188 AKTVTSEILKNFF-SEKGKVLSAKVSRVPGTSKSSGYGFVSFSEEEDVEAAISSFNNSLL 246
>gi|15233980|ref|NP_194208.1| ribonucleoprotein [Arabidopsis thaliana]
gi|464662|sp|Q04836.1|ROC3_ARATH RecName: Full=31 kDa ribonucleoprotein, chloroplastic; AltName:
Full=RNA-binding protein 1/2/3; Short=AtRBP33; AltName:
Full=RNA-binding protein RNP-T; AltName:
Full=RNA-binding protein cp31; Flags: Precursor
gi|16490|emb|CAA46347.1| RNA-binding protein [Arabidopsis thaliana]
gi|387569|gb|AAA32860.1| 31 kDa RNA binding protein [Arabidopsis thaliana]
gi|475718|gb|AAA18378.1| RNA-binding protein 1 [Arabidopsis thaliana]
gi|4220513|emb|CAA22986.1| RNA-binding protein RNP-T precursor [Arabidopsis thaliana]
gi|7269328|emb|CAB79387.1| RNA-binding protein RNP-T precursor [Arabidopsis thaliana]
gi|332659554|gb|AEE84954.1| ribonucleoprotein [Arabidopsis thaliana]
gi|737169|prf||1921382A RNA-binding protein
Length = 329
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 82/170 (48%), Gaps = 5/170 (2%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAAL 158
+ +L N+ + + + LFEQ GTV E+ + + +++RG FVTM S DEA A+
Sbjct: 149 EAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAV 208
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA-TFNLFIANLSFEARAKDLREFFIS 217
Y+ GR L VN K + P P+ + F +++ NL ++ L + F S
Sbjct: 209 EKFNRYDLNGRLLTVN--KAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLF-S 265
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVI 267
E VV A V++ RS G+GFV+ AISA G+ + I
Sbjct: 266 EHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAI 315
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
R+ N+PW + + LF +HG V++ + + R+RG FVTM DE A++
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304
Query: 161 LESYEFEGRTLKVNYAK 177
L+ EGR ++VN A+
Sbjct: 305 LDGQNLEGRAIRVNVAE 321
>gi|326493824|dbj|BAJ85374.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 294
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 83/156 (53%), Gaps = 5/156 (3%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYE 165
N+P+ E + LFEQ G V E+ + + +++RG FVTM + +EA A+ Y+
Sbjct: 122 NLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMFHRYD 181
Query: 166 FEGRTLKVNYAKIKK-KNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVS 224
GR L VN A + + PP ++F +++ NL ++ L E F SE VV
Sbjct: 182 VNGRLLTVNKAAPRGARVERPPRDSG--SSFRIYVGNLPWQVDDSRLVELF-SEHGKVVD 238
Query: 225 AEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
A V++ + RS G+GFV+ S++ + AI+A G+
Sbjct: 239 ARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQ 274
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAALNN 160
R+ N+PW + LF +HG V+D + R+RG FVTM S +E A+
Sbjct: 211 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 270
Query: 161 LESYEFEGRTLKVNYAK 177
L+ EGR L+VN A+
Sbjct: 271 LDGQSLEGRALRVNVAE 287
>gi|15294254|gb|AAK95304.1|AF410318_1 AT4g24770/F22K18_30 [Arabidopsis thaliana]
gi|23505889|gb|AAN28804.1| At4g24770/F22K18_30 [Arabidopsis thaliana]
Length = 329
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 82/170 (48%), Gaps = 5/170 (2%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAAL 158
+ +L N+ + + + LFEQ GTV E+ + + +++RG FVTM S DEA A+
Sbjct: 149 EAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAV 208
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA-TFNLFIANLSFEARAKDLREFFIS 217
Y+ GR L VN K + P P+ + F +++ NL ++ L + F S
Sbjct: 209 EKFNRYDLNGRLLTVN--KAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLF-S 265
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVI 267
E VV A V++ RS G+GFV+ AISA G+ + I
Sbjct: 266 EHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAI 315
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
R+ N+PW + + LF +HG V++ + + R+RG FVTM DE A++
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304
Query: 161 LESYEFEGRTLKVNYAK 177
L+ EGR ++VN A+
Sbjct: 305 LDGQNLEGRAIRVNVAE 321
>gi|326497679|dbj|BAK05929.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 321
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 91/171 (53%), Gaps = 15/171 (8%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR-NRGLAFVTMGSPDEATAALNNLESYE 165
N+P +++ LF +GTVL +E+S ++ +RG FVTM S EA A+N L+ ++
Sbjct: 134 NLPRRCGVDELLELFGPYGTVLSVEVSRDAETGISRGCGFVTMRSLAEARTAINALDGFD 193
Query: 166 FEGRTLKVNYAK---IKKKNPF-----PPVQPKPFAT-FNLFIANLSFEARAKDLREFFI 216
+GR + V A ++NP PP++ F + + +++ NL++ + + LRE F
Sbjct: 194 LDGREMFVKLAAHVIASRRNPGGLSHTPPMKDHIFESRYKIYVGNLAWSVQPQHLREHFT 253
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAI----SAFQGKVIM 263
G VVS ++ RS YGF+SF S + E A+ + F G+ I+
Sbjct: 254 KCG-TVVSTRLLTDRKGGRSRVYGFLSFSSAEELEAALQLNNTEFHGRDII 303
Score = 38.1 bits (87), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKN-RNRGLAFVTMGSPDEATAA 157
S+ ++ N+ W+ + +R F + GTV+ L K R+R F++ S +E AA
Sbjct: 230 SRYKIYVGNLAWSVQPQHLREHFTKCGTVVSTRLLTDRKGGRSRVYGFLSFSSAEELEAA 289
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKN 182
L L + EF GR + V A +K +
Sbjct: 290 LQ-LNNTEFHGRDIIVREAHVKSPD 313
>gi|359806184|ref|NP_001240946.1| uncharacterized protein LOC100812934 [Glycine max]
gi|255639723|gb|ACU20155.1| unknown [Glycine max]
Length = 279
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 83/181 (45%), Gaps = 12/181 (6%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNN 160
+L N+P++ + LFE G V +E+ + R+RG FVTM S +EA AA
Sbjct: 90 KLFVGNLPFSVDSARLAELFESAGNVEVVEVIYDKTTGRSRGFGFVTMSSVEEAEAAAKQ 149
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPP----------VQPKPFATFN-LFIANLSFEARAK 209
YE +GR+L+VN +N P P + N + + NL++
Sbjct: 150 FNGYELDGRSLRVNSGPPPARNESAPRFRGGSSFGSRGGGPSDSENRVHVGNLAWGVDDV 209
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIAL 269
L F +G V+ A VI+ RS G+GFV+F S ++AI + G + I +
Sbjct: 210 ALESLFREQGKKVLEARVIYDRESGRSRGFGFVTFGSPDEVKSAIQSLDGVDLNGRAIRV 269
Query: 270 S 270
S
Sbjct: 270 S 270
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGT-VLDIELSMHSK-NRNRGLAFVTMGSPDEATA 156
S+ R+ N+ W + +LF + G VL+ + + R+RG FVT GSPDE +
Sbjct: 193 SENRVHVGNLAWGVDDVALESLFREQGKKVLEARVIYDRESGRSRGFGFVTFGSPDEVKS 252
Query: 157 ALNNLESYEFEGRTLKVNYAKIKKK 181
A+ +L+ + GR ++V+ A K K
Sbjct: 253 AIQSLDGVDLNGRAIRVSLADSKPK 277
>gi|218201679|gb|EEC84106.1| hypothetical protein OsI_30426 [Oryza sativa Indica Group]
Length = 758
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 84/166 (50%), Gaps = 13/166 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
+L +VP T+T +D+R LFE+HG V+++ L K +G FV + +EA A+
Sbjct: 123 KLFIGSVPRTATEDDVRPLFEEHGDVVEVALIKDRKTGEQQGCCFVKYATSEEAERAIRA 182
Query: 161 LES-YEFEG--RTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
L + Y G ++V YA +++ LF+A+L+ +A AK++ E F
Sbjct: 183 LHNQYTLPGAMGPIQVRYADGERER-------HGAIEHKLFVASLNKQATAKEIEEIFAP 235
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
G V I D R+S G GFV F S++ A A+SA G +M
Sbjct: 236 YGH--VEDVYIMKDGMRQSRGCGFVKFSSREPALAAMSALSGNYVM 279
>gi|475719|gb|AAA18379.1| RNA-binding protein 2 [Arabidopsis thaliana]
Length = 315
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 84/173 (48%), Gaps = 5/173 (2%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAAL 158
+ +L N+ + + + LFEQ GTV E+ + + +++RG FVTM S DEA A+
Sbjct: 135 EAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAV 194
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA-TFNLFIANLSFEARAKDLREFFIS 217
Y+ GR L VN K + P P+ + F +++ NL ++ L + F S
Sbjct: 195 EKFNRYDLNGRLLTVN--KAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLF-S 251
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALS 270
E VV A V++ RS G+GFV+ AISA G+ + I ++
Sbjct: 252 EHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVN 304
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
R+ N+PW + + LF +HG V++ + + R+RG FVTM DE A++
Sbjct: 231 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 290
Query: 161 LESYEFEGRTLKVNYAK 177
L+ EGR ++VN A+
Sbjct: 291 LDGQNLEGRAIRVNVAE 307
>gi|34555650|gb|AAQ74973.1| flowering time control protein isoform OsFCA-4 [Oryza sativa Indica
Group]
Length = 626
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 84/166 (50%), Gaps = 13/166 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
+L +VP T+T +D+R LFE+HG V+++ L K +G FV + +EA A+
Sbjct: 22 KLFIGSVPRTATEDDVRPLFEEHGDVVEVALIKDRKTGEQQGCCFVKYATSEEAERAIRA 81
Query: 161 LES-YEFEG--RTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
L + Y G ++V YA +++ LF+A+L+ +A AK++ E F
Sbjct: 82 LHNQYTLPGAMGPIQVRYADGERER-------HGAIEHKLFVASLNKQATAKEIEEIFAP 134
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
G V I D R+S G GFV F S++ A A+SA G +M
Sbjct: 135 YGH--VEDVYIMKDGMRQSRGCGFVKFSSREPALAAMSALSGNYVM 178
>gi|413921823|gb|AFW61755.1| ribonucleoprotein [Zea mays]
Length = 286
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 80/156 (51%), Gaps = 5/156 (3%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYE 165
N+P+ E + +F+Q G V E+ + + ++RG FVTM + +EA A+ Y+
Sbjct: 114 NLPYDVDSEGLAQIFDQAGVVEVAEVIYNRETGQSRGFGFVTMSTVEEADKAIEMFSRYD 173
Query: 166 FEGRTLKVNYAKIKKKNPFPPVQPKPFA-TFNLFIANLSFEARAKDLREFFISEGWDVVS 224
GR L VN A + P + FA F ++ NL ++ L + F SE +VV
Sbjct: 174 ISGRLLNVNRASSRGTRMERP--QRQFAPAFRAYVGNLPWQVDDSRLVQLF-SEHGEVVD 230
Query: 225 AEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
A+V++ RS G+GFVS SK+ AISA G+
Sbjct: 231 AKVVYDRETGRSRGFGFVSMVSKEELNDAISALDGQ 266
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 56/106 (52%), Gaps = 2/106 (1%)
Query: 81 VDSSSAAAVNTEQREEEYSKT-RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-N 138
V+ +S+ E+ + +++ R N+PW + LF +HG V+D ++ +
Sbjct: 181 VNRASSRGTRMERPQRQFAPAFRAYVGNLPWQVDDSRLVQLFSEHGEVVDAKVVYDRETG 240
Query: 139 RNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPF 184
R+RG FV+M S +E A++ L+ E +GR L+VN A + + F
Sbjct: 241 RSRGFGFVSMVSKEELNDAISALDGQELDGRPLRVNVAAERPQRGF 286
>gi|115478012|ref|NP_001062601.1| Os09g0123200 [Oryza sativa Japonica Group]
gi|34555646|gb|AAQ74971.1| flowering time control protein isoform OsFCA-3 [Oryza sativa Indica
Group]
gi|113630834|dbj|BAF24515.1| Os09g0123200 [Oryza sativa Japonica Group]
Length = 637
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 84/166 (50%), Gaps = 13/166 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
+L +VP T+T +D+R LFE+HG V+++ L K +G FV + +EA A+
Sbjct: 22 KLFIGSVPRTATEDDVRPLFEEHGDVVEVALIKDRKTGEQQGCCFVKYATSEEAERAIRA 81
Query: 161 LES-YEFEG--RTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
L + Y G ++V YA +++ LF+A+L+ +A AK++ E F
Sbjct: 82 LHNQYTLPGAMGPIQVRYADGERER-------HGAIEHKLFVASLNKQATAKEIEEIFAP 134
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
G V I D R+S G GFV F S++ A A+SA G +M
Sbjct: 135 YGH--VEDVYIMKDGMRQSRGCGFVKFSSREPALAAMSALSGNYVM 178
>gi|115470657|ref|NP_001058927.1| Os07g0158300 [Oryza sativa Japonica Group]
gi|34394882|dbj|BAC84331.1| putative RNA-binding protein [Oryza sativa Japonica Group]
gi|113610463|dbj|BAF20841.1| Os07g0158300 [Oryza sativa Japonica Group]
gi|125557292|gb|EAZ02828.1| hypothetical protein OsI_24955 [Oryza sativa Indica Group]
gi|215695203|dbj|BAG90394.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215740788|dbj|BAG96944.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 348
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 87/168 (51%), Gaps = 13/168 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAALN 159
RL N+P+T T +I F + G V ++++ ++ K +R+RG AFVTM + +EA A+
Sbjct: 119 RLFVGNLPYTMTSGEISQTFSEAGRVDNVQI-IYDKVTDRSRGFAFVTMATAEEAATAIQ 177
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQP-------KPFATFNLFIANLSFEARAKDLR 212
GRT +VNY ++ + + TF ++ NL + RA LR
Sbjct: 178 MFNGALLGGRTARVNYPEVPRGGERAVGSAAATRENRRDDGTFKIYAGNLGWGVRADALR 237
Query: 213 EFFISEGW-DVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
F EG ++ A VIF + RS G+GFVSF++ + A+ A+ A G
Sbjct: 238 AAF--EGQPGLLDARVIFERDSGRSRGFGFVSFRTAEDAQAALEALDG 283
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 6/101 (5%)
Query: 84 SSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRG 142
SAAA +R++ K + A N+ W + +RA FE +LD + R+RG
Sbjct: 205 GSAAATRENRRDDGTFK--IYAGNLGWGVRADALRAAFEGQPGLLDARVIFERDSGRSRG 262
Query: 143 LAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNP 183
FV+ + ++A AAL L+ E EGR L+++ A ++NP
Sbjct: 263 FGFVSFRTAEDAQAALEALDGVELEGRPLRLSMA---EQNP 300
>gi|363807234|ref|NP_001242356.1| 31 kDa ribonucleoprotein, chloroplastic-like [Glycine max]
gi|255645622|gb|ACU23305.1| unknown [Glycine max]
Length = 300
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 83/162 (51%), Gaps = 4/162 (2%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNN 160
++ N+P+ E + +LFEQ GTV E+ + + +R+RG FVTM + +E A+
Sbjct: 123 KIFVGNLPFDFDSEKLASLFEQAGTVEVAEVIYNRATDRSRGFGFVTMSTIEELEKAVKM 182
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGW 220
YE GR L VN K K P P+P +F +++ NL ++ L + F SE
Sbjct: 183 FSGYELNGRVLTVN--KAAPKGAQPERPPRPPQSFRVYVGNLPWDVDNSRLEQIF-SEHG 239
Query: 221 DVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
V A V++ RS G+GFV+ S+ AI+A G+ +
Sbjct: 240 KVEDARVVYDRETGRSRGFGFVTMSSETDMNDAIAALDGQSL 281
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
R+ N+PW + + +F +HG V D + + R+RG FVTM S + A+
Sbjct: 216 RVYVGNLPWDVDNSRLEQIFSEHGKVEDARVVYDRETGRSRGFGFVTMSSETDMNDAIAA 275
Query: 161 LESYEFEGRTLKVNYAKIKKK 181
L+ +GR ++VN A + K
Sbjct: 276 LDGQSLDGRAIRVNVAAQRPK 296
>gi|193850551|gb|ACF22879.1| RNA-binding protein [Glycine max]
Length = 302
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 83/162 (51%), Gaps = 4/162 (2%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNN 160
++ N+P+ E + +LFEQ GTV E+ + + +R+RG FVTM + +E A+
Sbjct: 125 KIFVGNLPFDFDSEKLASLFEQAGTVEVAEVIYNRATDRSRGFGFVTMSTIEELEKAVKM 184
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGW 220
YE GR L VN K K P P+P +F +++ NL ++ L + F SE
Sbjct: 185 FSGYELNGRVLTVN--KAAPKGAQPERPPRPPQSFRVYVGNLPWDVDNSRLEQIF-SEHG 241
Query: 221 DVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
V A V++ RS G+GFV+ S+ AI+A G+ +
Sbjct: 242 KVEDARVVYDRETGRSRGFGFVTMSSETDMNDAIAALDGQSL 283
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
R+ N+PW + + +F +HG V D + + R+RG FVTM S + A+
Sbjct: 218 RVYVGNLPWDVDNSRLEQIFSEHGKVEDARVVYDRETGRSRGFGFVTMSSETDMNDAIAA 277
Query: 161 LESYEFEGRTLKVNYAKIKKK 181
L+ +GR ++VN A + K
Sbjct: 278 LDGQSLDGRAIRVNVAAQRPK 298
>gi|297827229|ref|XP_002881497.1| hypothetical protein ARALYDRAFT_482714 [Arabidopsis lyrata subsp.
lyrata]
gi|297327336|gb|EFH57756.1| hypothetical protein ARALYDRAFT_482714 [Arabidopsis lyrata subsp.
lyrata]
Length = 289
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 108/251 (43%), Gaps = 48/251 (19%)
Query: 54 HAYTFPITPKKVSP---FVFHFSATTQ-----DPFVDSSSAAAVNTEQREEEYSKTRLVA 105
+ +F I K SP FV + + T++ D F D ++ Q++ + +L
Sbjct: 42 DSVSFSIAAKWNSPASRFVRNVAITSEFEVEEDGFADDAAP------QQQSFSADLKLFV 95
Query: 106 QNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAALNNLES 163
N+P+ + LFE G V +E+ ++ K R+RG FVTM S E AA N
Sbjct: 96 GNLPFNVDSAQLAQLFESAGNVEMVEV-IYDKVTGRSRGFGFVTMSSVSEVEAAANQFNG 154
Query: 164 YEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF------------------------NLFI 199
YE +GR L+VN P PP + F+ +++
Sbjct: 155 YELDGRPLRVNAG------PPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYV 208
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
NLS+ L F +G VV A VI+ + RS G+GFV++ S + + AI++ G
Sbjct: 209 GNLSWGVDDMALESLFAEQG-KVVEARVIYDRDSGRSKGFGFVTYNSSQEVQNAINSLNG 267
Query: 260 KVIMCLVIALS 270
+ I +S
Sbjct: 268 ADLDGRQIRVS 278
Score = 43.9 bits (102), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAALN 159
R+ N+ W + +LF + G V++ + R++G FVT S E A+N
Sbjct: 204 NRVYVGNLSWGVDDMALESLFAEQGKVVEARVIYDRDSGRSKGFGFVTYNSSQEVQNAIN 263
Query: 160 NLESYEFEGRTLKVNYAKIK 179
+L + +GR ++V+ A+ +
Sbjct: 264 SLNGADLDGRQIRVSEAEAR 283
>gi|33390912|gb|AAQ17123.1| flowering time control protein isoform OsFCA-1 [Oryza sativa Indica
Group]
gi|47496990|dbj|BAD20100.1| Flowering time control protein FCA gamma-like [Oryza sativa
Japonica Group]
gi|50261763|gb|AAT72462.1| FCA gamma protein [Oryza sativa Japonica Group]
gi|58003966|gb|AAW62371.1| FCA [Oryza sativa Japonica Group]
Length = 738
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 84/166 (50%), Gaps = 13/166 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
+L +VP T+T +D+R LFE+HG V+++ L K +G FV + +EA A+
Sbjct: 123 KLFIGSVPRTATEDDVRPLFEEHGDVVEVALIKDRKTGEQQGCCFVKYATSEEAERAIRA 182
Query: 161 LES-YEFEG--RTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
L + Y G ++V YA +++ LF+A+L+ +A AK++ E F
Sbjct: 183 LHNQYTLPGAMGPIQVRYADGERER-------HGAIEHKLFVASLNKQATAKEIEEIFAP 235
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
G V I D R+S G GFV F S++ A A+SA G +M
Sbjct: 236 YGH--VEDVYIMKDGMRQSRGCGFVKFSSREPALAAMSALSGNYVM 279
>gi|226533248|ref|NP_001149356.1| plastid-specific 30S ribosomal protein 2 [Zea mays]
gi|195626620|gb|ACG35140.1| plastid-specific 30S ribosomal protein 2 [Zea mays]
gi|414884785|tpg|DAA60799.1| TPA: plastid-specific 30S ribosomal protein 2 [Zea mays]
Length = 251
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 91/173 (52%), Gaps = 10/173 (5%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDE 153
E + +L N+P T T++++R +F HGTV E+ M+ K NR+R FVTM + +E
Sbjct: 64 EAVAARKLYVGNIPRTVTNDELRDMFAAHGTVERAEV-MYDKYTNRSRRFGFVTMSTAEE 122
Query: 154 ATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF-----NLFIANLSFEARA 208
A AA+ L E R +KVN + N P+P A F +++ NL+
Sbjct: 123 ANAAVEALNGTEVGDRKIKVNVTESFLPN-IDRSAPEPEALFVDSQYKVYVGNLAKTVTT 181
Query: 209 KDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKV 261
+ L+ FF SE +++SA V +S GYGFV+F S++ E A++ F V
Sbjct: 182 EVLKNFF-SEKGNILSATVSHIPGTSKSKGYGFVTFSSEEEVEAAVATFNNAV 233
>gi|226509575|ref|NP_001149184.1| LOC100282806 [Zea mays]
gi|195625314|gb|ACG34487.1| ribonucleoprotein [Zea mays]
Length = 286
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 80/156 (51%), Gaps = 5/156 (3%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYE 165
N+P+ E + +F+Q G V E+ + + ++RG FVTM + +EA A+ Y+
Sbjct: 114 NLPYDVDSEGLAQIFDQAGVVEVAEVIYNRETGQSRGFGFVTMSTVEEADKAIEMFNRYD 173
Query: 166 FEGRTLKVNYAKIKKKNPFPPVQPKPFA-TFNLFIANLSFEARAKDLREFFISEGWDVVS 224
GR L VN A + P + FA F ++ NL ++ L + F SE +VV
Sbjct: 174 ISGRLLNVNRASSRGTRMERP--QRQFAPAFRAYVGNLPWQVDDSRLVQLF-SEHGEVVD 230
Query: 225 AEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
A+V++ RS G+GFVS SK+ AISA G+
Sbjct: 231 AKVVYDRETGRSRGFGFVSMVSKEELNDAISALDGQ 266
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 56/106 (52%), Gaps = 2/106 (1%)
Query: 81 VDSSSAAAVNTEQREEEYSKT-RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-N 138
V+ +S+ E+ + +++ R N+PW + LF +HG V+D ++ +
Sbjct: 181 VNRASSRGTRMERPQRQFAPAFRAYVGNLPWQVDDSRLVQLFSEHGEVVDAKVVYDRETG 240
Query: 139 RNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPF 184
R+RG FV+M S +E A++ L+ E +GR L+VN A + + F
Sbjct: 241 RSRGFGFVSMVSKEELNDAISALDGQELDGRPLRVNVAAERPQRGF 286
>gi|224035665|gb|ACN36908.1| unknown [Zea mays]
Length = 251
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 91/173 (52%), Gaps = 10/173 (5%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDE 153
E + +L N+P T T++++R +F HGTV E+ M+ K NR+R FVTM + +E
Sbjct: 64 EAVAARKLYVGNIPRTVTNDELRDMFAAHGTVERAEV-MYDKYTNRSRRFGFVTMSTAEE 122
Query: 154 ATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF-----NLFIANLSFEARA 208
A AA+ L E R +KVN + N P+P A F +++ NL+
Sbjct: 123 ANAAVEALNGTEVGDRKIKVNVTESFLPN-IDRSAPEPEALFVDSQYKVYVGNLAKTVTT 181
Query: 209 KDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKV 261
+ L+ FF SE +++SA V +S GYGFV+F S++ E A++ F V
Sbjct: 182 EVLKNFF-SEKGNILSATVSHIPGTSKSKGYGFVTFSSEEEVEAAVATFNNAV 233
>gi|17432522|gb|AAL39067.1|AF389431_1 single-stranded DNA binding protein precursor [Solanum tuberosum]
Length = 289
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 86/187 (45%), Gaps = 26/187 (13%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAALN 159
++ N+P++ + LFE+ G V +E+ ++ K R+RG FVTM S + AA
Sbjct: 100 KIFVGNLPFSVDSAALAELFERAGDVEMVEV-IYDKLTGRSRGFGFVTMSSKEAVEAACQ 158
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA----------------TFNLFIANLS 203
YE +GR L+VN P PP + F + +++ NL+
Sbjct: 159 QFNGYEIDGRALRVN------SGPAPPKRENSFGDNSSYQGGRGGGSMDSSNRVYVGNLA 212
Query: 204 FEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
+ + L F SE VV A+V++ + RS G+GFV++ S K AI + G +
Sbjct: 213 WSVDQQQLETLF-SEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIESLDGVDLG 271
Query: 264 CLVIALS 270
I +S
Sbjct: 272 GRAIRVS 278
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAA 157
S R+ N+ W+ + + LF + G V+D ++ R+RG FVT S E A
Sbjct: 202 SSNRVYVGNLAWSVDQQQLETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDA 261
Query: 158 LNNLESYEFEGRTLKVNYAKIK 179
+ +L+ + GR ++V+ A+ +
Sbjct: 262 IESLDGVDLGGRAIRVSPAEAR 283
>gi|255549774|ref|XP_002515938.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223544843|gb|EEF46358.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 608
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 84/176 (47%), Gaps = 13/176 (7%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEAT 155
+E T L +N+ T + +F G ++ + ++RG FV SP++A
Sbjct: 194 DELKFTNLYVKNLSKDMTQDAFHNMFSAFGEIISAVIMQDHNGKSRGFGFVDFESPEDAK 253
Query: 156 AALNNLESYEFEGRTLKVNYAKIKK----------KNPFPPVQPKPFATFNLFIANLSFE 205
A++ L Y+ E RTL V A+ K K+ F K F NL++ NL+
Sbjct: 254 KAVDALNGYQLESRTLFVGRAQAKAERKKILQHEYKDIFNTHMEK-FKASNLYVKNLALC 312
Query: 206 ARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKV 261
L+E F G +VSA+V+ +DN S G+GFV F S + A+ A++A G V
Sbjct: 313 IDNDKLQELFSCSG-KIVSAKVMRYDNG-ASRGFGFVCFSSPEEAKKALNALNGAV 366
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 45/85 (52%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEAT 155
E++ + L +N+ ++ ++ LF G ++ ++ + +RG FV SP+EA
Sbjct: 297 EKFKASNLYVKNLALCIDNDKLQELFSCSGKIVSAKVMRYDNGASRGFGFVCFSSPEEAK 356
Query: 156 AALNNLESYEFEGRTLKVNYAKIKK 180
ALN L F+G++L V A+ K+
Sbjct: 357 KALNALNGAVFQGKSLYVAMAQCKR 381
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 71/151 (47%), Gaps = 11/151 (7%)
Query: 113 THEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTL 171
T ++R +F G + ++ L S R+ +V P +A AL+NL +G+ +
Sbjct: 31 TEMNLRTVFSSMGPIRNVHLCRCSLTGRSLCYGYVNFYRPYDAYKALSNLNHTYLKGKLM 90
Query: 172 KVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD 231
++ + + +NP + NL++ NL + L+ F S+ ++S +V+ +
Sbjct: 91 RIMWCQ---RNPCA----RKSGIGNLYVKNLDASIDSAGLQSLF-SKFGTILSCKVV--E 140
Query: 232 NPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
+S GYGFV F S+ A A +A ++
Sbjct: 141 EHGKSKGYGFVQFDSEDSALAARTALHDTML 171
>gi|2443390|dbj|BAA22411.1| Ps16 protein [Triticum aestivum]
Length = 293
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 83/158 (52%), Gaps = 5/158 (3%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYE 165
N+P+ E + LFEQ G V E+ + + +++RG FVTM + +EA A+ Y+
Sbjct: 121 NLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMFHRYD 180
Query: 166 FEGRTLKVNYAKIKK-KNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVS 224
GR L VN A + + PP ++F +++ NL ++ L E F SE VV
Sbjct: 181 VNGRLLTVNKAAPRGARVERPPRDSG--SSFRIYVGNLPWQVDDSRLVELF-SEHGKVVD 237
Query: 225 AEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
A V++ + RS G+GFV+ S+ + AI+A G+ +
Sbjct: 238 ARVVYDRDTGRSRGFGFVTMASQPELDDAIAALDGQSL 275
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAALNN 160
R+ N+PW + LF +HG V+D + R+RG FVTM S E A+
Sbjct: 210 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQPELDDAIAA 269
Query: 161 LESYEFEGRTLKVNYAK 177
L+ EGR L+VN A+
Sbjct: 270 LDGQSLEGRALRVNVAE 286
>gi|125563035|gb|EAZ08415.1| hypothetical protein OsI_30679 [Oryza sativa Indica Group]
Length = 226
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 108/219 (49%), Gaps = 29/219 (13%)
Query: 47 PLSSSPFHAYTFPITPKKVSPFVFHFSATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQ 106
P +++ H +F P +++ + A + P V A+ + + EE + +L
Sbjct: 16 PPAAALHHRSSFCRCPSRLTVGAARWWARRRQPAVVVRVVASSSVLEAPEEVAARKLYVG 75
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAALNNLESY 164
N+P T T++++ A+F HGTV E+ M K R+R FVTM +P+EA AA+ +L
Sbjct: 76 NIPRTVTNDELAAMFADHGTVERAEV-MFDKYTGRSRRFGFVTMSTPEEANAAIESLNET 134
Query: 165 EFEGRTLKVNYAK-----IKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEG 219
E GR +KVN + I + P +P+P +F+ + ++ + G
Sbjct: 135 EVGGRKIKVNVTESFLPNIDRSAP----EPEP-----VFVDS-----------QYRFTLG 174
Query: 220 WDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ 258
+V+SA V +S GYGFV+F S++ E A+S F
Sbjct: 175 -EVLSATVSRIPGTAKSKGYGFVTFSSEEEVEAAVSTFN 212
>gi|510240|emb|CAA43420.1| RNA binding protein [Arabidopsis thaliana]
Length = 310
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 84/173 (48%), Gaps = 5/173 (2%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAAL 158
+ +L N+ + + + LFEQ GTV E+ + + +++RG FVTM S DEA A+
Sbjct: 130 EAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAV 189
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA-TFNLFIANLSFEARAKDLREFFIS 217
Y+ GR L VN K + P P+ + F +++ NL ++ L + F S
Sbjct: 190 EKFNRYDLNGRLLTVN--KAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLF-S 246
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALS 270
E VV A V++ RS G+GFV+ AISA G+ + I ++
Sbjct: 247 EHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVN 299
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
R+ N+PW + + LF +HG V++ + + R+RG FVTM DE A++
Sbjct: 226 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 285
Query: 161 LESYEFEGRTLKVNYAKIK 179
L+ EGR ++VN A+ +
Sbjct: 286 LDGQNLEGRAIRVNVAEER 304
>gi|297816490|ref|XP_002876128.1| hypothetical protein ARALYDRAFT_348313 [Arabidopsis lyrata subsp.
lyrata]
gi|297321966|gb|EFH52387.1| hypothetical protein ARALYDRAFT_348313 [Arabidopsis lyrata subsp.
lyrata]
Length = 467
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 107/220 (48%), Gaps = 25/220 (11%)
Query: 49 SSSPFHAYTFPITPKKVSPFV-FHFSATTQDPF-VDSSSAAAVNTEQREEEYSKTRLVAQ 106
SS PFH+ + + F+ + + T + P +D SS AA R+
Sbjct: 34 SSKPFHSLAGTFSRSSRTRFIPYAVTETEEKPAALDPSSEAA------------RRVYIG 81
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAALNNLESY 164
N+P T T+E + L E+HG V +++ M+ K R+R F TM S ++A A + L
Sbjct: 82 NIPRTVTNEQLTKLVEEHGAVEKVQV-MYDKYSGRSRRFGFATMKSVEDANAVVEKLNGN 140
Query: 165 EFEGRTLKVNYAK--IKKKNP-FPPVQPKPFA----TFNLFIANLSFEARAKDLREFFIS 217
EGR +KVN + I +P +Q + A + +++ NL+ + K++ E S
Sbjct: 141 TVEGREIKVNITEKPIASSSPDLSLLQSEDSAFVDSPYKVYVGNLA-KTVTKEMLENLFS 199
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAF 257
E VVSA+V +S G+GFV+F S++ E AI A
Sbjct: 200 EKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAILAL 239
>gi|413941709|gb|AFW74358.1| hypothetical protein ZEAMMB73_309849 [Zea mays]
Length = 826
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 84/157 (53%), Gaps = 10/157 (6%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR-NRGLAFVTMGSPDEATAALNNLESYE 165
N+P +D+ LF HGTVL +E+S +++ +RG A VTM S EA AA++ L+ ++
Sbjct: 647 NLPRRCDVQDLLELFTPHGTVLSVEISRDAESGISRGTASVTMRSLAEARAAIDALDGFD 706
Query: 166 FEGRTLKVNYAK---IKKKNP----FPPVQPKPFAT-FNLFIANLSFEARAKDLREFFIS 217
+GR + V A +KN P + F T +++ NL++ + +DLRE F
Sbjct: 707 MDGREVFVKLASDVISNRKNVNLAHITPTKDHIFETPHKVYVGNLAWSVQPQDLRELFTQ 766
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAI 254
G VVS ++ R+ YGF+SF S + E A+
Sbjct: 767 CGT-VVSTRLLTDRKGGRNRVYGFLSFSSAQELEEAL 802
>gi|115474525|ref|NP_001060859.1| Os08g0117100 [Oryza sativa Japonica Group]
gi|50725630|dbj|BAD33097.1| putative RNA-binding protein RNP-D precursor [Oryza sativa Japonica
Group]
gi|113622828|dbj|BAF22773.1| Os08g0117100 [Oryza sativa Japonica Group]
gi|125559951|gb|EAZ05399.1| hypothetical protein OsI_27607 [Oryza sativa Indica Group]
gi|215704603|dbj|BAG94231.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 319
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 91/170 (53%), Gaps = 14/170 (8%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR-NRGLAFVTMGSPDEATAALNNLESYE 165
N+P +D+ LF+ +GTVL +E+S + +RG FVTM S EA A+N L+ ++
Sbjct: 140 NLPRRCDVDDLYELFKPYGTVLSVEISRDPETGLSRGCGFVTMRSLPEARTAMNALDGFD 199
Query: 166 FEGRTLKVNYAK---IKKKN----PFPPVQPKPFAT-FNLFIANLSFEARAKDLREFFIS 217
+GR + V + K++N PPV+ F + +++ N+++ ++LRE+F S
Sbjct: 200 LDGREMLVKLSSDVVSKRRNINMTHTPPVKDHIFESPHKIYVGNIAWSVEPQELREYF-S 258
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAI----SAFQGKVIM 263
+ VVS ++ R YGF+SF S + E A+ + F G+ I+
Sbjct: 259 QCGTVVSTRLLTDRKGGRGRVYGFLSFASAEELEAALKLDNTHFHGRNIL 308
>gi|414588979|tpg|DAA39550.1| TPA: hypothetical protein ZEAMMB73_959869 [Zea mays]
Length = 708
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 83/166 (50%), Gaps = 13/166 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
+L +VP T+T ED+R LFE+HG VL++ L K +G FV + +EA A+
Sbjct: 123 KLFVGSVPRTATEEDVRPLFEEHGDVLEVALIKDRKTGEQQGCCFVKYATSEEAERAIRG 182
Query: 161 LES-YEFEG--RTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
L + Y G ++V YA +++ LF+A+L+ +A K++ E F
Sbjct: 183 LHNHYTLPGAMGPIQVRYADGERER-------HGAIEHKLFVASLNKQATPKEIEEIFAP 235
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
G V I D+ ++S G GFV F SK+ A A++A G M
Sbjct: 236 YGH--VEDVYIMRDSVKQSRGCGFVKFSSKEAAVEAMNALSGTYTM 279
>gi|293333224|ref|NP_001169298.1| uncharacterized protein LOC100383162 [Zea mays]
gi|224028499|gb|ACN33325.1| unknown [Zea mays]
gi|414588978|tpg|DAA39549.1| TPA: hypothetical protein ZEAMMB73_959869 [Zea mays]
Length = 735
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 83/166 (50%), Gaps = 13/166 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
+L +VP T+T ED+R LFE+HG VL++ L K +G FV + +EA A+
Sbjct: 123 KLFVGSVPRTATEEDVRPLFEEHGDVLEVALIKDRKTGEQQGCCFVKYATSEEAERAIRG 182
Query: 161 LES-YEFEG--RTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
L + Y G ++V YA +++ LF+A+L+ +A K++ E F
Sbjct: 183 LHNHYTLPGAMGPIQVRYADGERER-------HGAIEHKLFVASLNKQATPKEIEEIFAP 235
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
G V I D+ ++S G GFV F SK+ A A++A G M
Sbjct: 236 YGH--VEDVYIMRDSVKQSRGCGFVKFSSKEAAVEAMNALSGTYTM 279
>gi|224138286|ref|XP_002322776.1| predicted protein [Populus trichocarpa]
gi|222867406|gb|EEF04537.1| predicted protein [Populus trichocarpa]
Length = 324
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 96/183 (52%), Gaps = 14/183 (7%)
Query: 89 VNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVT 147
V + REE +L N+P++ T ++ +FE+ G V E + +R+RG FVT
Sbjct: 108 VAIKAREE----GKLYVGNLPYSMTSSELAEVFEEAGRVFGAEVICDRVTDRSRGFGFVT 163
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI-------- 199
M S +EA A+ + GRTL+VN+ ++ + ++P+ + + FI
Sbjct: 164 MESVEEAKEAIRMFNGSQVGGRTLRVNFPEVPRGGEREVMEPRIRSGYKGFIDSEHKIYA 223
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
NL + ++ L + F ++ ++SA+VI+ + RS G+GFVSF S + AE A+ A G
Sbjct: 224 GNLGWRLTSEGLGDAFANQ-PGLLSAKVIYERDTGRSRGFGFVSFDSAENAEAALEAMNG 282
Query: 260 KVI 262
+ +
Sbjct: 283 EEV 285
>gi|475720|gb|AAA18380.1| RNA-binding protein 3 [Arabidopsis thaliana]
Length = 162
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 76/153 (49%), Gaps = 5/153 (3%)
Query: 120 LFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178
LFEQ GTV E+ + + +++RG FVTM S DEA A+ Y+ GR L VN K
Sbjct: 2 LFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVN--KA 59
Query: 179 KKKNPFPPVQPKPFA-TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSA 237
+ P P+ + F +++ NL ++ L + F SE VV A V++ RS
Sbjct: 60 APRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLF-SEHGKVVEARVVYDRETGRSR 118
Query: 238 GYGFVSFKSKKVAETAISAFQGKVIMCLVIALS 270
G+GFV+ AISA G+ + I ++
Sbjct: 119 GFGFVTMSDVDELNEAISALDGQNLEGRAIRVN 151
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
R+ N+PW + + LF +HG V++ + + R+RG FVTM DE A++
Sbjct: 78 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 137
Query: 161 LESYEFEGRTLKVNYAK 177
L+ EGR ++VN A+
Sbjct: 138 LDGQNLEGRAIRVNVAE 154
>gi|19032262|emb|CAD18922.1| RNA-binding protein precursor [Persea americana]
Length = 315
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 92/195 (47%), Gaps = 9/195 (4%)
Query: 82 DSSSAAAVNTEQREEEYS----KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK 137
D + V E+ YS + ++ N+P+ D+ LF + G V E+ + +
Sbjct: 113 DEEESGEVGFADEEDSYSAPPEEVKIFVGNLPFDLESADLADLFNKAGVVESAEVIYNRE 172
Query: 138 -NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA-TF 195
+++RG FV+M + +E A+ + Y+ GRTL VN A + P P+ F F
Sbjct: 173 TDQSRGFGFVSMSTVEEVVKAIEMFDRYDINGRTLTVNKAAPRGSRAERP--PRDFEPAF 230
Query: 196 NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
+++ N+ ++ L + F SE V A ++F RS G+GFV+ S+ E AI+
Sbjct: 231 RVYVGNIPWQVDNLRLEQLF-SEYGKVEEARIVFDRETGRSRGFGFVTMSSQIEMEDAIA 289
Query: 256 AFQGKVIMCLVIALS 270
A G + I +S
Sbjct: 290 ALDGSDLDGRAIKVS 304
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
R+ N+PW + + LF ++G V + + + R+RG FVTM S E A+
Sbjct: 231 RVYVGNIPWQVDNLRLEQLFSEYGKVEEARIVFDRETGRSRGFGFVTMSSQIEMEDAIAA 290
Query: 161 LESYEFEGRTLKVNYAKIKKK 181
L+ + +GR +KV+ A+ + +
Sbjct: 291 LDGSDLDGRAIKVSMAQERPR 311
>gi|133247|sp|P28644.1|ROC1_SPIOL RecName: Full=28 kDa ribonucleoprotein, chloroplastic; Short=28RNP
Length = 233
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 85/167 (50%), Gaps = 9/167 (5%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAAL 158
+ +L N+P+ E + +F+ G V E+ + + +R+RG FVTM + +EA A+
Sbjct: 54 EAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAV 113
Query: 159 NNLESYEFEGRTLKVNYAKIK---KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFF 215
L Y+ +GR L VN A + ++ P +P + +++ NL ++ L + F
Sbjct: 114 ELLNGYDMDGRQLTVNKAAPRGSPERAPRGDFEP----SCRVYVGNLPWDVDTSRLEQLF 169
Query: 216 ISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
SE VVSA V+ RS G+GFV+ S+ AI+A G+ +
Sbjct: 170 -SEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTL 215
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIEL-SMHSKNRNRGLAFVTMGSPDEATAALNN 160
R+ N+PW + LF +HG V+ + S R+RG FVTM S E A+
Sbjct: 150 RVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAA 209
Query: 161 LESYEFEGRTLKVNYAKIKKKNPF 184
L+ +GR ++VN A+ + + F
Sbjct: 210 LDGQTLDGRAVRVNVAEERPRRAF 233
>gi|30693595|ref|NP_566958.3| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|79314769|ref|NP_001030841.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|17979394|gb|AAL49922.1| unknown protein [Arabidopsis thaliana]
gi|22136722|gb|AAM91680.1| unknown protein [Arabidopsis thaliana]
gi|332645382|gb|AEE78903.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332645383|gb|AEE78904.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 253
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 86/169 (50%), Gaps = 10/169 (5%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAALN 159
R+ N+P T T+E + L E+HG V +++ M+ K R+R F TM S ++A A +
Sbjct: 77 RVYIGNIPRTVTNEQLTKLVEEHGAVEKVQV-MYDKYSGRSRRFGFATMKSVEDANAVVE 135
Query: 160 NLESYEFEGRTLKVNYAK--IKKKNPFPPVQPKPFA----TFNLFIANLSFEARAKDLRE 213
L EGR +KVN + I +Q + A + +++ NL+ + K++ E
Sbjct: 136 KLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLA-KTVTKEMLE 194
Query: 214 FFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
SE VVSA+V +S G+GFV+F S++ E AI A ++
Sbjct: 195 NLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLL 243
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Query: 76 TQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELS-M 134
T+ P S + + +E S ++ N+ T T E + LF + G V+ ++S +
Sbjct: 152 TEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRV 211
Query: 135 HSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176
+++ G FVT S ++ AA+ L + EG+ ++VN A
Sbjct: 212 PGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKIRVNKA 253
>gi|226502782|ref|NP_001151728.1| ribonucleoprotein A [Zea mays]
gi|195649373|gb|ACG44154.1| ribonucleoprotein A [Zea mays]
gi|414591006|tpg|DAA41577.1| TPA: ribonucleoprotein A [Zea mays]
Length = 268
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 90/188 (47%), Gaps = 13/188 (6%)
Query: 84 SSAAAVNTEQREEEYSKT-RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNR 141
+ A E EE+S+ +L N+P++ + LFEQ G+V +E+ R+R
Sbjct: 61 TEGAEQEGEDGSEEFSEDLKLFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSR 120
Query: 142 GLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPF--------- 192
G FVTM S +EA AA+ Y F+GR L+VN ++ P P+
Sbjct: 121 GFGFVTMSSAEEAEAAVEQFNGYAFQGRQLRVNCGPPPPRDESTPRAPRGGGGGGGGGFV 180
Query: 193 -ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAE 251
+ +++ NL++ L F SE V+ A+VI+ + RS G+GFV++ S +
Sbjct: 181 DSANKVYVGNLAWGVDNSTLENLF-SEQGQVLDAKVIYDRDSGRSRGFGFVTYGSAQEVN 239
Query: 252 TAISAFQG 259
AIS G
Sbjct: 240 NAISNLDG 247
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAA 157
S ++ N+ W + + LF + G VLD ++ R+RG FVT GS E A
Sbjct: 182 SANKVYVGNLAWGVDNSTLENLFSEQGQVLDAKVIYDRDSGRSRGFGFVTYGSAQEVNNA 241
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPF 184
++NL+ + +GR ++V A+ K + F
Sbjct: 242 ISNLDGIDLDGRQIRVTAAESKPRRQF 268
>gi|147859670|emb|CAN83111.1| hypothetical protein VITISV_026573 [Vitis vinifera]
Length = 355
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 86/173 (49%), Gaps = 7/173 (4%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVTMGS 150
E+ E T+L N+P++ + + + +G+ +E L R+RG AFVTM S
Sbjct: 57 EEGAESPVNTKLYFGNLPYSCDSAHLAGIIQNYGSPELVEVLYDRDTGRSRGFAFVTMSS 116
Query: 151 PDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKD 210
++ A + NL+ E+ GRTL+VN++ K P P+ P+ + LF+ NLS+ ++
Sbjct: 117 VEDCNAVIENLDGSEYGGRTLRVNFS--DKPKPKLPLYPE--TEYKLFVGNLSWSVTSES 172
Query: 211 LREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
L + F G +V+ A V++ D S + + K A + + F + M
Sbjct: 173 LNQVFQEYG-NVIGARVLY-DGETGSVIWLLIGIKQSGRAPSLVIGFDFHIAM 223
>gi|217074252|gb|ACJ85486.1| unknown [Medicago truncatula]
Length = 213
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 69/117 (58%), Gaps = 1/117 (0%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALN 159
K L+ N+PW+ + DI+ LF Q GTV+D+E+ + +G FVTM S + A AA++
Sbjct: 95 KKNLIVFNLPWSLSKPDIKDLFGQCGTVIDVEIIKSKDGKGKGYTFVTMDSGEGAQAAVD 154
Query: 160 NLESYEFEGRTLKVNYAK-IKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFF 215
+ E GR L+V +AK KK P PP A + ++ +NL+++AR+ LR+ F
Sbjct: 155 KFNATEISGRILRVEFAKGFKKPRPPPPAPTPKEARYVIYASNLAWKARSTHLRDIF 211
>gi|414884784|tpg|DAA60798.1| TPA: hypothetical protein ZEAMMB73_633133 [Zea mays]
Length = 244
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 90/170 (52%), Gaps = 10/170 (5%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDE 153
E + +L N+P T T++++R +F HGTV E+ M+ K NR+R FVTM + +E
Sbjct: 64 EAVAARKLYVGNIPRTVTNDELRDMFAAHGTVERAEV-MYDKYTNRSRRFGFVTMSTAEE 122
Query: 154 ATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF-----NLFIANLSFEARA 208
A AA+ L E R +KVN + N P+P A F +++ NL+
Sbjct: 123 ANAAVEALNGTEVGDRKIKVNVTESFLPN-IDRSAPEPEALFVDSQYKVYVGNLAKTVTT 181
Query: 209 KDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ 258
+ L+ FF SE +++SA V +S GYGFV+F S++ E A++ F
Sbjct: 182 EVLKNFF-SEKGNILSATVSHIPGTSKSKGYGFVTFSSEEEVEAAVATFN 230
Score = 41.2 bits (95), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELS-MHSKNRNRGLAFVTMGSPDEATAA 157
S+ ++ N+ T T E ++ F + G +L +S + ++++G FVT S +E AA
Sbjct: 166 SQYKVYVGNLAKTVTTEVLKNFFSEKGNILSATVSHIPGTSKSKGYGFVTFSSEEEVEAA 225
Query: 158 LNNLESYEFEGRTLKVNYA 176
+ + E EG+ ++VN A
Sbjct: 226 VATFNNAELEGQLIRVNRA 244
>gi|224066995|ref|XP_002302317.1| predicted protein [Populus trichocarpa]
gi|222844043|gb|EEE81590.1| predicted protein [Populus trichocarpa]
Length = 243
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/44 (75%), Positives = 38/44 (86%)
Query: 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPR 234
P TFNLF+ANL FEA++KDL+E FI+EG DVVSAEVIF DNPR
Sbjct: 2 PGPTFNLFLANLPFEAKSKDLKELFIAEGADVVSAEVIFQDNPR 45
>gi|21309|emb|CAA41023.1| 28kD RNA binding protein [Spinacia oleracea]
Length = 226
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 85/167 (50%), Gaps = 9/167 (5%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAAL 158
+ +L N+P+ E + +F+ G V E+ + + +R+RG FVTM + +EA A+
Sbjct: 47 EAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAV 106
Query: 159 NNLESYEFEGRTLKVNYAKIK---KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFF 215
L Y+ +GR L VN A + ++ P +P + +++ NL ++ L + F
Sbjct: 107 ELLNGYDMDGRQLTVNKAAPRGSPERAPRGDFEP----SCRVYVGNLPWDVDTSRLEQLF 162
Query: 216 ISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
SE VVSA V+ RS G+GFV+ S+ AI+A G+ +
Sbjct: 163 -SEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTL 208
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIEL-SMHSKNRNRGLAFVTMGSPDEATAALNN 160
R+ N+PW + LF +HG V+ + S R+RG FVTM S E A+
Sbjct: 143 RVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAA 202
Query: 161 LESYEFEGRTLKVNYAKIKKKNPF 184
L+ +GR ++VN A+ + + F
Sbjct: 203 LDGQTLDGRAVRVNVAEERPRRAF 226
>gi|143346991|gb|ABO93208.1| Elav [Platynereis dumerilii]
Length = 361
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 80/174 (45%), Gaps = 19/174 (10%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIEL---------SMHSKNRNRGLAFVT 147
E SKT L+ +P T T E+IR+LF G V +L S S ++ G FV
Sbjct: 38 EDSKTNLIVNYLPQTMTQEEIRSLFSSIGEVESCKLIRDKATDQSSGTSSCQSLGYGFVN 97
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEAR 207
P++A A+N L + +T+KV+YA+ ++ NL+++ L
Sbjct: 98 YKRPEDAEKAINTLNGLRLQNKTIKVSYARPSSES---------IKGANLYLSGLPKSMS 148
Query: 208 AKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKV 261
+LR F S G +++ ++ + S G GF+ F + AE AI GKV
Sbjct: 149 EPELRSLFSSCG-SIINCRILCDNTTGLSKGVGFIRFDQRVEAERAIKQLNGKV 201
>gi|356533254|ref|XP_003535181.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 275
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 83/181 (45%), Gaps = 13/181 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNN 160
+L N+P+ + LFE G V +E+ + R+RG FVTM S +EA AA
Sbjct: 87 KLFVGNLPFNVDSAQLAELFESAGNVEVVEVIYDKTTGRSRGFGFVTMSSVEEAEAAAQQ 146
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPP----------VQPKPFATFN-LFIANLSFEARAK 209
YE +GR L+VN +N P P + N + ++NL++
Sbjct: 147 FNGYELDGRALRVNSGPPPARNESAPRFRGGSSFGSRGGGPSDSENRVHVSNLAWGVDNV 206
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIAL 269
L+ F +G +V+ A VI+ RS G+GFV+F S +AI + G + I +
Sbjct: 207 ALKSLFREQG-NVLEARVIYDRESGRSRGFGFVTFSSPDEVNSAIQSLNGVDLNGRAIRV 265
Query: 270 S 270
S
Sbjct: 266 S 266
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAA 157
S+ R+ N+ W + +++LF + G VL+ + + R+RG FVT SPDE +A
Sbjct: 190 SENRVHVSNLAWGVDNVALKSLFREQGNVLEARVIYDRESGRSRGFGFVTFSSPDEVNSA 249
Query: 158 LNNLESYEFEGRTLKVNYAKIKKK 181
+ +L + GR ++V+ A K K
Sbjct: 250 IQSLNGVDLNGRAIRVSLADSKPK 273
>gi|2204096|emb|CAB05392.1| FCA delta [Arabidopsis thaliana]
gi|5302786|emb|CAB46035.1| FCA delta protein [Arabidopsis thaliana]
gi|7268378|emb|CAB78671.1| FCA delta protein [Arabidopsis thaliana]
Length = 533
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 86/191 (45%), Gaps = 20/191 (10%)
Query: 79 PFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK- 137
P D S + R S +L +VP T+T E+IR FEQHG VL++ L +
Sbjct: 101 PISDHGSFTGTDVSDRS---STVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRT 157
Query: 138 NRNRGLAFV---TMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFAT 194
+ +G FV T D A AL+N + ++V YA +++ T
Sbjct: 158 GQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGERER---------IGT 208
Query: 195 --FNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAET 252
F LF+ +L+ +A K++ E F+ G V + D R+S G GFV + SK+ A
Sbjct: 209 LEFKLFVGSLNKQATEKEVEEIFLQFGH--VEDVYLMRDEYRQSRGCGFVKYSSKETAMA 266
Query: 253 AISAFQGKVIM 263
AI G M
Sbjct: 267 AIDGLNGTYTM 277
>gi|212722626|ref|NP_001131649.1| uncharacterized protein LOC100193009 [Zea mays]
gi|194692152|gb|ACF80160.1| unknown [Zea mays]
Length = 314
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 84/157 (53%), Gaps = 10/157 (6%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR-NRGLAFVTMGSPDEATAALNNLESYE 165
N+P +D+ LF HGTVL +E+S +++ +RG A VTM S EA AA++ L+ ++
Sbjct: 135 NLPRRCDVQDLLELFTPHGTVLSVEISRDAESGISRGTASVTMRSLAEARAAIDALDGFD 194
Query: 166 FEGRTLKVNYAK---IKKKNP----FPPVQPKPFAT-FNLFIANLSFEARAKDLREFFIS 217
+GR + V A +KN P + F T +++ NL++ + +DLRE F
Sbjct: 195 MDGREVFVKLASDVISNRKNVNLAHITPTKDHIFETPHKVYVGNLAWSVQPQDLRELFTQ 254
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAI 254
G VVS ++ R+ YGF+SF S + E A+
Sbjct: 255 CG-TVVSTRLLTDRKGGRNRVYGFLSFSSAQELEEAL 290
>gi|186511881|ref|NP_193363.4| RNA binding / abscisic acid binding protein [Arabidopsis thaliana]
gi|332658326|gb|AEE83726.1| RNA binding / abscisic acid binding protein [Arabidopsis thaliana]
Length = 533
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 86/191 (45%), Gaps = 20/191 (10%)
Query: 79 PFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK- 137
P D S + R S +L +VP T+T E+IR FEQHG VL++ L +
Sbjct: 101 PISDHGSFTGTDVSDRS---STVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRT 157
Query: 138 NRNRGLAFV---TMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFAT 194
+ +G FV T D A AL+N + ++V YA +++ T
Sbjct: 158 GQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGERER---------IGT 208
Query: 195 --FNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAET 252
F LF+ +L+ +A K++ E F+ G V + D R+S G GFV + SK+ A
Sbjct: 209 LEFKLFVGSLNKQATEKEVEEIFLQFGH--VEDVYLMRDEYRQSRGCGFVKYSSKETAMA 266
Query: 253 AISAFQGKVIM 263
AI G M
Sbjct: 267 AIDGLNGTYTM 277
>gi|2204091|emb|CAB05389.1| FCA delta [Arabidopsis thaliana]
Length = 533
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 86/191 (45%), Gaps = 20/191 (10%)
Query: 79 PFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK- 137
P D S + R S +L +VP T+T E+IR FEQHG VL++ L +
Sbjct: 101 PISDHGSFTGTDVSDRS---STVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRT 157
Query: 138 NRNRGLAFV---TMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFAT 194
+ +G FV T D A AL+N + ++V YA +++ T
Sbjct: 158 GQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGERER---------IGT 208
Query: 195 --FNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAET 252
F LF+ +L+ +A K++ E F+ G V + D R+S G GFV + SK+ A
Sbjct: 209 LEFKLFVGSLNKQATEKEVEEIFLQFGH--VEDVYLMRDEYRQSRGCGFVKYSSKETAMA 266
Query: 253 AISAFQGKVIM 263
AI G M
Sbjct: 267 AIDGLNGTYTM 277
>gi|148907319|gb|ABR16796.1| unknown [Picea sitchensis]
Length = 387
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 89/174 (51%), Gaps = 10/174 (5%)
Query: 93 QREEEY--SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR-NRGLAFVTMG 149
+ EEE +T+L N+P + + LF++ GTV +E+ + + +RG AFVTM
Sbjct: 84 KNEEELPPRRTKLYVGNLPRSCDIAQLTQLFQEFGTVESVEVVRNEETGISRGFAFVTMS 143
Query: 150 SPDEATAALNNLESYEFEGRTLKVNY-AKI--KKKNPFPPVQPKPFATFNLFIANLSFEA 206
+ EA +A+ L+ + GR + VN+ AK+ KKK P + LF+ NL++
Sbjct: 144 TVKEAKSAIEKLQGSDLGGRDMIVNFPAKVLSKKKETDDSYIETP---YQLFVGNLAWSV 200
Query: 207 RAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
+ + L+ F G +V +A+VI+ +GFV S+ E AI + GK
Sbjct: 201 KKEILKSLFSQHG-NVSAAKVIYSGKGGVPRAFGFVCLSSQSEMEDAIVSLHGK 253
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 81/181 (44%), Gaps = 23/181 (12%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRN-RGLAFVTMGSPDEATAALNN 160
+L N+ W+ E +++LF QHG V ++ K R FV + S E A+ +
Sbjct: 190 QLFVGNLAWSVKKEILKSLFSQHGNVSAAKVIYSGKGGVPRAFGFVCLSSQSEMEDAIVS 249
Query: 161 LESYEFEGRTLKVNYAKIKKKN------------PFPPVQPKPFAT---------FNLFI 199
L EF GR LKV A+ K+ P V+ T + +++
Sbjct: 250 LHGKEFHGRNLKVRQARPTSKDMVVSDVEENIAKPSTMVEDSMTETVKATFVGSAYGVYV 309
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+NLS + K L E F G +V+ A V++ RS YGFV+F S+ E AI+A
Sbjct: 310 SNLSLSVKNKALSELFSQHG-NVLDARVLYARKAGRSRPYGFVNFSSQAEVEAAIAALDK 368
Query: 260 K 260
K
Sbjct: 369 K 369
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVTMGSPDEATAALNNLESYE 165
N+ + ++ + LF QHG VLD L R+R FV S E AA+ L+ E
Sbjct: 311 NLSLSVKNKALSELFSQHGNVLDARVLYARKAGRSRPYGFVNFSSQAEVEAAIAALDKKE 370
Query: 166 FEGRTLKVNYAKIK 179
F R L V AK+K
Sbjct: 371 FYERKLVVKEAKVK 384
>gi|414883566|tpg|DAA59580.1| TPA: hypothetical protein ZEAMMB73_267259 [Zea mays]
Length = 277
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 71/138 (51%), Gaps = 7/138 (5%)
Query: 138 NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPV----QPKPFA 193
NR+RG AFVTM + +EA A+ + GRT +VNY ++ + V + +
Sbjct: 86 NRSRGFAFVTMATAEEAAKAIQMFDGALLGGRTARVNYPEVPRGGERRTVTMSGRRRDDG 145
Query: 194 TFNLFIANLSFEARAKDLREFFISEGW-DVVSAEVIFHDNPRRSAGYGFVSFKSKKVAET 252
T+ ++ NL + RA LR F EG ++ A VIF RS G+GFVSF + + A+
Sbjct: 146 TYKIYAGNLGWGVRADTLRNVF--EGRAGLLDARVIFERETGRSRGFGFVSFSTAEDAQA 203
Query: 253 AISAFQGKVIMCLVIALS 270
A+ + G + + LS
Sbjct: 204 ALESLDGVELEGRSLRLS 221
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 54/102 (52%), Gaps = 5/102 (4%)
Query: 89 VNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVT 147
V R + ++ A N+ W + +R +FE +LD + + R+RG FV+
Sbjct: 135 VTMSGRRRDDGTYKIYAGNLGWGVRADTLRNVFEGRAGLLDARVIFERETGRSRGFGFVS 194
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQP 189
+ ++A AAL +L+ E EGR+L+++ A ++NP PP P
Sbjct: 195 FSTAEDAQAALESLDGVELEGRSLRLSLA---EQNP-PPGSP 232
>gi|332658328|gb|AEE83728.1| RNA binding / abscisic acid binding protein [Arabidopsis thaliana]
Length = 672
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 86/191 (45%), Gaps = 20/191 (10%)
Query: 79 PFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK- 137
P D S + R S +L +VP T+T E+IR FEQHG VL++ L +
Sbjct: 26 PISDHGSFTGTDVSDRS---STVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRT 82
Query: 138 NRNRGLAFV---TMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFAT 194
+ +G FV T D A AL+N + ++V YA +++ T
Sbjct: 83 GQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGERER---------IGT 133
Query: 195 --FNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAET 252
F LF+ +L+ +A K++ E F+ G V + D R+S G GFV + SK+ A
Sbjct: 134 LEFKLFVGSLNKQATEKEVEEIFLQFGH--VEDVYLMRDEYRQSRGCGFVKYSSKETAMA 191
Query: 253 AISAFQGKVIM 263
AI G M
Sbjct: 192 AIDGLNGTYTM 202
>gi|2204095|emb|CAB05391.1| FCA gamma [Arabidopsis thaliana]
Length = 747
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 86/191 (45%), Gaps = 20/191 (10%)
Query: 79 PFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK- 137
P D S + R S +L +VP T+T E+IR FEQHG VL++ L +
Sbjct: 101 PISDHGSFTGTDVSDRS---STVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRT 157
Query: 138 NRNRGLAFV---TMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFAT 194
+ +G FV T D A AL+N + ++V YA +++ T
Sbjct: 158 GQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGERER---------IGT 208
Query: 195 --FNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAET 252
F LF+ +L+ +A K++ E F+ G V + D R+S G GFV + SK+ A
Sbjct: 209 LEFKLFVGSLNKQATEKEVEEIFLQFGH--VEDVYLMRDEYRQSRGCGFVKYSSKETAMA 266
Query: 253 AISAFQGKVIM 263
AI G M
Sbjct: 267 AIDGLNGTYTM 277
>gi|326503656|dbj|BAJ86334.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 268
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 103/241 (42%), Gaps = 34/241 (14%)
Query: 45 FFPLSSSPFHAYTFPITPKKVSPFVFHFSATTQDPFVDSSSAAAVN----TEQREEEYSK 100
F L SS F + P K+ SA + P + A AV+ TE EE
Sbjct: 14 FLSLPSSSFKPVPSALFPSKIPQHRALASAGWRHPLAPLAVAVAVSSDVETEVAEEFSED 73
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAAL 158
R+ N+P++ + LFEQ G+V +E+ ++ K R+RG FVTM + +E A+
Sbjct: 74 LRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEV-IYDKLTGRSRGFGFVTMSTVEEVEEAV 132
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNPFPP---VQPKPF-----------------ATFNLF 198
L Y +GR LKVN P PP P+ F ++
Sbjct: 133 ERLNGYVLDGRALKVN------SGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVY 186
Query: 199 IANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ 258
+ NLS+ L F +G V+ A VI+ RS G+GFV++ + + A+S
Sbjct: 187 VGNLSWNVDDSALANLFNEQG-SVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNLD 245
Query: 259 G 259
G
Sbjct: 246 G 246
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 94 REEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPD 152
R R+ N+ W + LF + G+VL + + R+RG FVT G+ D
Sbjct: 176 RGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSD 235
Query: 153 EATAALNNLESYEFEGRTLKVNYAKIKK 180
E A++NL+ + +GR ++V A+ ++
Sbjct: 236 EVQKAVSNLDGTDMDGRQIRVTVAEARQ 263
>gi|2204089|emb|CAB05388.1| FCA gamma [Arabidopsis thaliana]
gi|57169178|gb|AAW38964.1| FCA [Arabidopsis thaliana]
Length = 747
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 86/191 (45%), Gaps = 20/191 (10%)
Query: 79 PFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK- 137
P D S + R S +L +VP T+T E+IR FEQHG VL++ L +
Sbjct: 101 PISDHGSFTGTDVSDRS---STVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRT 157
Query: 138 NRNRGLAFV---TMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFAT 194
+ +G FV T D A AL+N + ++V YA +++ T
Sbjct: 158 GQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGERER---------IGT 208
Query: 195 --FNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAET 252
F LF+ +L+ +A K++ E F+ G V + D R+S G GFV + SK+ A
Sbjct: 209 LEFKLFVGSLNKQATEKEVEEIFLQFGH--VEDVYLMRDEYRQSRGCGFVKYSSKETAMA 266
Query: 253 AISAFQGKVIM 263
AI G M
Sbjct: 267 AIDGLNGTYTM 277
>gi|334302803|sp|O04425.2|FCA_ARATH RecName: Full=Flowering time control protein FCA
gi|2244986|emb|CAB10407.1| FCA gamma protein [Arabidopsis thaliana]
gi|7268377|emb|CAB78670.1| FCA gamma protein [Arabidopsis thaliana]
Length = 747
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 86/191 (45%), Gaps = 20/191 (10%)
Query: 79 PFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK- 137
P D S + R S +L +VP T+T E+IR FEQHG VL++ L +
Sbjct: 101 PISDHGSFTGTDVSDRS---STVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRT 157
Query: 138 NRNRGLAFV---TMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFAT 194
+ +G FV T D A AL+N + ++V YA +++ T
Sbjct: 158 GQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGERER---------IGT 208
Query: 195 --FNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAET 252
F LF+ +L+ +A K++ E F+ G V + D R+S G GFV + SK+ A
Sbjct: 209 LEFKLFVGSLNKQATEKEVEEIFLQFGH--VEDVYLMRDEYRQSRGCGFVKYSSKETAMA 266
Query: 253 AISAFQGKVIM 263
AI G M
Sbjct: 267 AIDGLNGTYTM 277
>gi|186511879|ref|NP_849543.2| RNA binding / abscisic acid binding protein [Arabidopsis thaliana]
gi|332658325|gb|AEE83725.1| RNA binding / abscisic acid binding protein [Arabidopsis thaliana]
Length = 747
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 86/191 (45%), Gaps = 20/191 (10%)
Query: 79 PFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK- 137
P D S + R S +L +VP T+T E+IR FEQHG VL++ L +
Sbjct: 101 PISDHGSFTGTDVSDRS---STVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRT 157
Query: 138 NRNRGLAFV---TMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFAT 194
+ +G FV T D A AL+N + ++V YA +++ T
Sbjct: 158 GQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGERER---------IGT 208
Query: 195 --FNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAET 252
F LF+ +L+ +A K++ E F+ G V + D R+S G GFV + SK+ A
Sbjct: 209 LEFKLFVGSLNKQATEKEVEEIFLQFGH--VEDVYLMRDEYRQSRGCGFVKYSSKETAMA 266
Query: 253 AISAFQGKVIM 263
AI G M
Sbjct: 267 AIDGLNGTYTM 277
>gi|357139508|ref|XP_003571323.1| PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like
[Brachypodium distachyon]
Length = 288
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 91/174 (52%), Gaps = 14/174 (8%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR-NRGLAFVTMGSPDEATAALNNL 161
L N+P +D+ LF+ +GTVL +E+S + +RG FVTM S A A+N L
Sbjct: 103 LFVCNLPRRCGVDDLLHLFQPYGTVLSVEVSRDPETGISRGCGFVTMRSLAAARTAMNAL 162
Query: 162 ESYEFEGRTLKVNYAK---IKKKNP----FPPVQPKPFAT-FNLFIANLSFEARAKDLRE 213
+ ++ +GR + V A ++NP P++ F + + +++ NL++ + + LRE
Sbjct: 163 DGFDLDGREMFVKLASHVVSNRRNPSLSHTAPMKDHIFESPYKIYVGNLAWSVQPQHLRE 222
Query: 214 FFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAI----SAFQGKVIM 263
F G ++VS ++ R+ YGF+SF S + + A+ + F G+ I+
Sbjct: 223 LFTQCG-NIVSTRLLTDRKGARNRVYGFLSFSSPEELDAALKLNNTNFHGRDII 275
>gi|366990603|ref|XP_003675069.1| hypothetical protein NCAS_0B06140 [Naumovozyma castellii CBS 4309]
gi|342300933|emb|CCC68698.1| hypothetical protein NCAS_0B06140 [Naumovozyma castellii CBS 4309]
Length = 443
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 94/210 (44%), Gaps = 7/210 (3%)
Query: 62 PKKVSPFVFHFSATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALF 121
P+ P +A Q SS + Q E S L N+ + + ++ F
Sbjct: 44 PESADPVSEAPAAGEQSAENQESSVVPASATQGGRETSDRVLYVGNLDKSINEDLLKQYF 103
Query: 122 EQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+ G + D+++ + KN N AF+ +A AL L + EG+T+++N+A ++
Sbjct: 104 QVGGQITDVKIMVDKKNNNVNYAFIEYLKSHDANVALQTLNGIQIEGKTVRINWAFQSQQ 163
Query: 182 NPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGF 241
TFNLF+ +L+ + + L F + V A V++ RS GYGF
Sbjct: 164 T------TNSDDTFNLFVGDLNVDVDDETLSHAF-DQFPSYVQAHVMWDMQTGRSRGYGF 216
Query: 242 VSFKSKKVAETAISAFQGKVIMCLVIALSY 271
VSF ++ A+ A++ QG I + +++
Sbjct: 217 VSFADQEQAQEAMNVMQGMPINGRAVRINW 246
>gi|32482067|gb|AAP84390.1| FCA protein [Triticum aestivum]
Length = 735
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 82/166 (49%), Gaps = 13/166 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE---ATAA 157
+L +VP T+ +D+R LFE HG VL++ L K +G FV + +E A A
Sbjct: 119 KLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRA 178
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
L+N + ++V YA +K+ + LF+A+L+ +A AK++ E F
Sbjct: 179 LHNQCTIPGAMGPVQVRYADGEKER-------HGSIEYKLFVASLNKQATAKEIEEIFAP 231
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
G V I D R+S G GFV F SK+ A A+++ G IM
Sbjct: 232 FGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIM 275
>gi|125591465|gb|EAZ31815.1| hypothetical protein OsJ_15973 [Oryza sativa Japonica Group]
Length = 234
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 79/128 (61%), Gaps = 2/128 (1%)
Query: 144 AFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLS 203
AFVTM + +EA AA+ L S + GRT++V ++K +K PP L+++NL
Sbjct: 66 AFVTMATAEEAAAAVEKLNSLDVMGRTIRVEFSKSFRKPAPPPPPGTILERHKLYVSNLP 125
Query: 204 FEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
++ARA +++EFF ++ +SA+V+F +SAGYGFVSF +K+ AE A++ GK +M
Sbjct: 126 WKARAPNMKEFFSK--FNPLSAKVVFDSPSGKSAGYGFVSFGTKEEAEAALTELDGKELM 183
Query: 264 CLVIALSY 271
+ L +
Sbjct: 184 GRPVRLRW 191
>gi|303284108|ref|XP_003061345.1| hypothetical protein MICPUCDRAFT_60999 [Micromonas pusilla
CCMP1545]
gi|226457696|gb|EEH54995.1| hypothetical protein MICPUCDRAFT_60999 [Micromonas pusilla
CCMP1545]
Length = 301
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 83/169 (49%), Gaps = 12/169 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQH------GTVLDIELSMHSKNRNRGLAFVTMGSPDEAT 155
R N+ W +T E + FE + G+V++ E++ R++G V SP A
Sbjct: 118 RCYIGNLAWETTAESLVGAFEDYPHFSSVGSVVNAEVAKQPGGRSKGWGLVDFESPAAAE 177
Query: 156 AALNNLESYEFEGRTLKVNYAKIKKKNPFPPV-----QPKPFATFNLFIANLSFEARAKD 210
+A+ L + + +GR++ V + P +P+ + + + NL + ++D
Sbjct: 178 SAIATLHNSDLQGRSIIVRLERAGGATKGPGGGANAGRPEASSGLQIVVRNLPWTTTSED 237
Query: 211 LREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
LR+ F G +VV A+ + H + RS G+G V F++++ A+ AI F G
Sbjct: 238 LRQVFQQVG-NVVKADAVCHADTGRSKGWGTVLFETREQAQAAIQGFNG 285
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 86/194 (44%), Gaps = 26/194 (13%)
Query: 95 EEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEA 154
E++ RL N+PW++ +++RA+F G + +++ + R+RG V S EA
Sbjct: 2 EDQVPANRLYVGNLPWSTDVDELRAIFSSCGAITHVDIPKGRQGRSRGYGIVEYSSAAEA 61
Query: 155 TAALNNLESYEFEGRTLKV--NYAKIKKKNPFPP------------VQPKPFA-TFNLFI 199
AA+ LE + R L V + A K N + P A +I
Sbjct: 62 QAAIAQLEGHTLGDRNLTVREDNAPTKTANSGGGSKSGGGRGSGNVMGETPAAEGCRCYI 121
Query: 200 ANLSFEARAKDLREFF-----ISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAI 254
NL++E A+ L F S VV+AEV RS G+G V F+S AE+AI
Sbjct: 122 GNLAWETTAESLVGAFEDYPHFSSVGSVVNAEVAKQPGG-RSKGWGLVDFESPAAAESAI 180
Query: 255 -----SAFQGKVIM 263
S QG+ I+
Sbjct: 181 ATLHNSDLQGRSII 194
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 94 REEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPD 152
R E S ++V +N+PWT+T ED+R +F+Q G V+ + H+ R++G V + +
Sbjct: 215 RPEASSGLQIVVRNLPWTTTSEDLRQVFQQVGNVVKADAVCHADTGRSKGWGTVLFETRE 274
Query: 153 EATAALNNLESYEFEGRTLKV 173
+A AA+ E E R +++
Sbjct: 275 QAQAAIQGFNGVELESRPMQI 295
>gi|393213816|gb|EJC99311.1| RNA-binding domain-containing protein [Fomitiporia mediterranea
MF3/22]
Length = 258
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 113/257 (43%), Gaps = 52/257 (20%)
Query: 57 TFPITPKKVS----PFVFHFSATTQDPFVDSSSAAAVNTEQREEEY-------------- 98
T P +P VS P H S + V S++ A+ +++ E
Sbjct: 3 TLPTSPNTVSLSPTPTSGHTSPGSPSASVTSTAPTALPSDEEVEAVIKQATSTIPTPDGR 62
Query: 99 ------SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPD 152
++T+L A N+P+ +D++ LF + GTVL ++S+ NR+RG V + S +
Sbjct: 63 PPPGKDTRTQLFAGNLPYRVRWQDLKDLFRRAGTVLRADVSLSPDNRSRGYGTVLLASAE 122
Query: 153 EATAALNNLESYEFEGRTLKVNYAKIK-------KKNP--FPPVQPKP------------ 191
+A A++ Y ++GR L+V ++ NP P P P
Sbjct: 123 DAGRAVDMFNGYNWQGRVLEVRLDRLGAVPGADMDANPAAIIPGAPLPGLPIGVNINGLN 182
Query: 192 -----FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKS 246
A+ L +L F + +DL++ F G ++ A+V + RS G+G V++ +
Sbjct: 183 ASLGGIASVALNGVHLPFHCQWQDLKDLFRQAG-TILRADVSLGPD-GRSRGFGTVTYAN 240
Query: 247 KKVAETAISAFQGKVIM 263
+ AE A++ F G ++
Sbjct: 241 EIDAERAVAMFNGYALL 257
>gi|260841407|ref|XP_002613907.1| hypothetical protein BRAFLDRAFT_268603 [Branchiostoma floridae]
gi|229299297|gb|EEN69916.1| hypothetical protein BRAFLDRAFT_268603 [Branchiostoma floridae]
Length = 321
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 83/177 (46%), Gaps = 12/177 (6%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAA 157
SKT LV +N+ W +T E + FE LD + M +R+RG +V S + A A
Sbjct: 115 SKT-LVVRNLSWDTTSEGLMQAFEGS---LDARVIMKPGTDRSRGFGYVDFESEEAAKEA 170
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPF---ATFNLFIANLSFEARAKDLREF 214
++++ E +GRT+ V + ++ A+ L + NLS++ DL E
Sbjct: 171 MDDMNQSELDGRTINVEFGTGRRGGGGGGGGGYGSHLQASKTLIVKNLSYDTGEDDLLEA 230
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271
F+ + A V+ RRS G+G++ F S+ A+ A+ G+ + I L +
Sbjct: 231 FVG----CIDARVVTDRESRRSKGFGYIDFDSEDAAKEALKNMDGQELDGRGIRLDF 283
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 82/170 (48%), Gaps = 17/170 (10%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNNL 161
L +N+ + ST E + +F +D+ + ++ R++G+A++ S + + +
Sbjct: 22 LFLKNLSYNSTVESVMEVFTD---AVDVRIPVYRDSGRSKGIAYLEFESEAKVEEVKSTM 78
Query: 162 ESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA----TFNLFIANLSFEARAKDLREFFIS 217
+ E +GR++ ++Y K + P Q + L + NLS++ ++ L + F
Sbjct: 79 DGVEVDGRSVVMDYVGAKAQFTGRPQQGSGRGPGTPSKTLVVRNLSWDTTSEGLMQAF-- 136
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAI-----SAFQGKVI 262
EG + A VI RS G+G+V F+S++ A+ A+ S G+ I
Sbjct: 137 EGS--LDARVIMKPGTDRSRGFGYVDFESEEAAKEAMDDMNQSELDGRTI 184
>gi|222423445|dbj|BAH19693.1| AT3G52150 [Arabidopsis thaliana]
Length = 253
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 86/169 (50%), Gaps = 10/169 (5%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAALN 159
R+ N+P T ++E + L E+HG V +++ M+ K R+R F TM S ++A A +
Sbjct: 77 RVYIGNIPRTVSNEQLTKLVEEHGAVEKVQV-MYDKYSGRSRRFGFATMKSVEDANAVVE 135
Query: 160 NLESYEFEGRTLKVNYAK--IKKKNPFPPVQPKPFA----TFNLFIANLSFEARAKDLRE 213
L EGR +KVN + I +Q + A + +++ NL+ + K++ E
Sbjct: 136 KLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLA-KTVTKEMLE 194
Query: 214 FFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
SE VVSA+V +S G+GFV+F S++ E A+ A ++
Sbjct: 195 NLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAVVALNNSLL 243
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Query: 76 TQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELS-M 134
T+ P S + + +E S ++ N+ T T E + LF + G V+ ++S +
Sbjct: 152 TEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRV 211
Query: 135 HSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176
+++ G FVT S ++ AA+ L + EG+ ++VN A
Sbjct: 212 PGTSKSTGFGFVTFSSEEDVEAAVVALNNSLLEGQKIRVNKA 253
>gi|12230584|sp|Q08935.1|ROC1_NICSY RecName: Full=29 kDa ribonucleoprotein A, chloroplastic; AltName:
Full=CP29A; Flags: Precursor
gi|19754|emb|CAA43427.1| 29kD A ribonucleoprotein [Nicotiana sylvestris]
Length = 273
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 89/177 (50%), Gaps = 10/177 (5%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAALN 159
++ N+P+++ + LFE+ G V +E+ ++ K R+RG FVTM S +E AA
Sbjct: 88 KIFVGNLPFSADSAALAELFERAGNVEMVEV-IYDKLTGRSRGFGFVTMSSKEEVEAACQ 146
Query: 160 NLESYEFEGRTLKVNYA--KIKKKNPFPPVQPKPFATF----NLFIANLSFEARAKDLRE 213
YE +GR L+VN K++N + +F +++ NL++ +D E
Sbjct: 147 QFNGYELDGRALRVNSGPPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAW-GVDQDALE 205
Query: 214 FFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALS 270
SE VV A+V++ + RS G+GFV++ S + AI + G + I +S
Sbjct: 206 TLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVS 262
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAALN 159
R+ N+ W + + LF + G V+D ++ R+RG FVT S +E A+
Sbjct: 188 NRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIE 247
Query: 160 NLESYEFEGRTLKVNYAKIK 179
+L+ + GR ++V+ A+ +
Sbjct: 248 SLDGVDLNGRAIRVSPAEAR 267
>gi|32482127|gb|AAP84414.1| FCA protein [Triticum aestivum]
Length = 740
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 84/173 (48%), Gaps = 13/173 (7%)
Query: 95 EEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE 153
+ + S +L+ +VP T+ +D+R LFE HG VL++ L K +G FV + +E
Sbjct: 118 DNKSSYVKLIVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEE 177
Query: 154 ---ATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKD 210
A AL+N + ++V Y +K+ LF+A+L+ +A AK+
Sbjct: 178 TESAIRALHNQCTIPGAMGPVQVRYTDGEKER-------HGSIEHKLFVASLNKQATAKE 230
Query: 211 LREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
+ E F G V I D R+S G GFV F SK+ A A+++ G IM
Sbjct: 231 IEEIFAPFGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIM 281
>gi|357114300|ref|XP_003558938.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like
[Brachypodium distachyon]
Length = 255
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 84/171 (49%), Gaps = 10/171 (5%)
Query: 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRN-RGLAFVTMGSPDEATA 156
Y ++VA +P+T+T +IR LFE+ G + ++LS + N GLAFVT S + A
Sbjct: 73 YECGKVVASGMPYTTTEAEIRELFERFGPIRSLQLSHFPDSGNFSGLAFVTFESDEVAMK 132
Query: 157 ALNNLESYEFEGRTLKVNYAKIK------KKNPFPPVQPKPFATFNLFIANLSFEARAKD 210
+L L+ ++ R ++V +I KK+ F KP + ++ NLS+ KD
Sbjct: 133 SL-ELDGHKLGYRFMRVERCRITASSKRPKKSEFQTDPEKPDGCLSAYVGNLSWNVTEKD 191
Query: 211 LREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKV 261
LR+FF S + S S G+G + F+ + E A+ Q ++
Sbjct: 192 LRDFFKSS--RIASVRFAIDKRTGDSRGFGHIDFEDDESLEKAVGMNQSEL 240
>gi|32482116|gb|AAP84410.1| FCA protein [Triticum aestivum]
Length = 707
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 81/166 (48%), Gaps = 13/166 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE---ATAA 157
+L +VP T+ +D+R LFE HG VL++ L K +G FV + +E A A
Sbjct: 103 KLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRA 162
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
L+N + ++V YA +K+ LF+A+L+ +A AK++ E F
Sbjct: 163 LHNQCTIPGAMGPVQVRYADGEKER-------HGSIEHKLFVASLNKQATAKEIEEIFAP 215
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
G V I D R+S G GFV F SK+ A A+++ G IM
Sbjct: 216 FGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIM 259
>gi|255718453|ref|XP_002555507.1| KLTH0G10912p [Lachancea thermotolerans]
gi|238936891|emb|CAR25070.1| KLTH0G10912p [Lachancea thermotolerans CBS 6340]
Length = 436
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 86/193 (44%), Gaps = 14/193 (7%)
Query: 82 DSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNR 141
+ + N + E S L N+ T E ++ F+ G++ ++++ M N+
Sbjct: 48 EEPTVTPANASRGGRETSDRILYVGNLDLAVTEEMLKQYFQVGGSIANVKILMDKNNKQA 107
Query: 142 GLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIAN 201
AFV P +A A L+ + E +K+N+A F Q TFNLF+ +
Sbjct: 108 NYAFVEFHQPHDANVAFQTLDGKQIENHVIKINWA-------FQSQQVSSEDTFNLFVGD 160
Query: 202 LSFEARAKDLREFFISEGWDV---VSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ 258
L+ + + L F D+ + A V++ RS GYGFVSF + A+ A+ Q
Sbjct: 161 LNVDVDDETLARTFK----DIPTFIQAHVMWDMQTGRSRGYGFVSFGEQTQAQKAMEDNQ 216
Query: 259 GKVIMCLVIALSY 271
G V+ I +++
Sbjct: 217 GAVVNGRAIRINW 229
Score = 38.9 bits (89), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 8/85 (9%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEF 166
N+P +T +D+ L + G ++D + H +R G F+ G+ ++A + L ++ F
Sbjct: 327 NIPHFATEQDLIPLLQNFGFIVDFK---HYPDR--GCCFIKYGTHEQAAVCILTLGNFPF 381
Query: 167 EGRTLKVNYAKIKKKNPFPPVQPKP 191
+GR L+ + K +K + P QPKP
Sbjct: 382 QGRNLRTGWGK-EKPSYIP--QPKP 403
>gi|167376639|ref|XP_001734079.1| plastid-specific 30S ribosomal protein 2, chloroplast precursor
[Entamoeba dispar SAW760]
gi|165904561|gb|EDR29774.1| plastid-specific 30S ribosomal protein 2, chloroplast precursor,
putative [Entamoeba dispar SAW760]
Length = 193
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 84/163 (51%), Gaps = 13/163 (7%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRN----RGLAFVTMGSPDEATAAL 158
L +N+P++ T E ++ +F + V + H K +N +G FVT+ + +E A+
Sbjct: 2 LFIKNLPFSITEEKLKEIFSKFEVVEATIVKTHKKKQNVNLSKGFGFVTVKTSEEQKKAI 61
Query: 159 NNLESYEFEGRTLKV--NYAKIKKKNPFPPV-QPKPFATFNLFIANLSFEARAKDLREFF 215
+ ++E EGR + V Y +I+KK +PK + N+F+ NL F+ + ++ F
Sbjct: 62 AEMNNFEIEGRKIIVAAAYKRIEKKQVAKKTNEPKQLSETNIFVKNLPFDLTDESFKKLF 121
Query: 216 ISEGWDVVSAEVIFHD----NPRRSAGYGFVSFKSKKVAETAI 254
E ++V A ++ N RS GYGFV FK+ + + AI
Sbjct: 122 --EKYEVNEATIVKRHSKKLNTDRSKGYGFVVFKTTEGQKKAI 162
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 48/91 (52%), Gaps = 6/91 (6%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK----NRNRGLAFVTMGSPD 152
+ S+T + +N+P+ T E + LFE++ + HSK +R++G FV + +
Sbjct: 97 QLSETNIFVKNLPFDLTDESFKKLFEKYEVNEATIVKRHSKKLNTDRSKGYGFVVFKTTE 156
Query: 153 EATAALNNLESYEFEGRTLKV--NYAKIKKK 181
A+ + ++E EGR + V Y +++KK
Sbjct: 157 GQKKAIEEMNNFEIEGRKITVAPAYQRVEKK 187
>gi|296083224|emb|CBI22860.3| unnamed protein product [Vitis vinifera]
Length = 708
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 83/166 (50%), Gaps = 13/166 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
+L +VP T+T EDIR LFE+HG VL++ L + + +G F+ + +EA A+
Sbjct: 42 KLFVGSVPRTATEEDIRPLFEEHGNVLEVALIKDKRTGQQQGCCFIKYATSEEAERAIRA 101
Query: 161 LES-YEFEGRT--LKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
L + Y G ++V YA +++ + LF+ +L+ +A K+++E F
Sbjct: 102 LHNQYTLPGGVGPIQVRYADGERER-------LGAVEYKLFVGSLNKQATEKEVKEIFSP 154
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
G V + D ++S G GFV F + +A AI+A G M
Sbjct: 155 YGQ--VEDVYLMRDELKQSRGCGFVKFSHRDMAMAAINALNGIYTM 198
>gi|66821129|ref|XP_644081.1| RNA recognition motif-containing protein RRM [Dictyostelium
discoideum AX4]
gi|60472201|gb|EAL70154.1| RNA recognition motif-containing protein RRM [Dictyostelium
discoideum AX4]
Length = 904
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 87/172 (50%), Gaps = 8/172 (4%)
Query: 88 AVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVT 147
+VN ++ E E +T + +++P+ ED+ LF ++G VL ++ + K + G FV
Sbjct: 96 SVNNKELELERDQTNVFVKHLPYEFNDEDLENLFSKYGKVLSSKVMIDPKGNSYGYGFVR 155
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEAR 207
SP E+ AA+ L+ Y+++ + L + N + + K + + NLFI L ++
Sbjct: 156 FSSPQESAAAIEELDGYQYQNKKLLCRLS-----NLYTNLNSK-YPSNNLFIKPLPYDVT 209
Query: 208 AKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
LR+ F G ++ +V+ D+ +S GFV F S+ A AI A G
Sbjct: 210 DDQLRKLFEPFGK-IIECKVML-DHNGQSKFAGFVRFSSELDASKAIDAMNG 259
>gi|32482125|gb|AAP84413.1| FCA protein, partial [Triticum aestivum]
Length = 722
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 81/166 (48%), Gaps = 13/166 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE---ATAA 157
+L +VP T+ +D+R LFE HG VL++ L K +G FV + +E A A
Sbjct: 115 KLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRA 174
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
L+N + ++V YA +K+ LF+A+L+ +A AK++ E F
Sbjct: 175 LHNQCTIPGAMGPVQVRYADGEKER-------HGSIEHKLFVASLNKQATAKEIEEIFAP 227
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
G V I D R+S G GFV F SK+ A A+++ G IM
Sbjct: 228 FGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIM 271
>gi|32482149|gb|AAP84420.1| FCA-D1 [Triticum aestivum]
Length = 659
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 81/166 (48%), Gaps = 13/166 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE---ATAA 157
+L +VP T+ +D+R LFE HG VL++ L K +G FV + +E A A
Sbjct: 40 KLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVEYATSEEAERAIRA 99
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
L+N + ++V YA +K+ LF+A+L+ +A AK++ E F
Sbjct: 100 LHNQCTIPGAMGPVQVRYADGEKER-------HGSIEHKLFVASLNKQATAKEIEEIFAP 152
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
G V I D R+S G GFV F SK+ A A+++ G IM
Sbjct: 153 FGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIM 196
>gi|357112177|ref|XP_003557886.1| PREDICTED: ribonucleoprotein At2g37220, chloroplastic-like
[Brachypodium distachyon]
Length = 272
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 92/201 (45%), Gaps = 32/201 (15%)
Query: 83 SSSAAAVNTEQREEEYSKT-RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NR 139
SS + E+ E+S+ R+ N+P++ + LFEQ G+V +E+ ++ K R
Sbjct: 58 SSDVETDDAEESAGEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEV-IYDKLTGR 116
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQ---PKPF---- 192
+RG FVTM + +E A+ L Y +GRT+KVN P PP P+ F
Sbjct: 117 SRGFGFVTMSTVEEVEEAVEQLNGYVLDGRTIKVN------SGPPPPRDQSSPRGFREQS 170
Query: 193 --------------ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAG 238
+++ NLS+ L F +G V+ A VI+ RS G
Sbjct: 171 SGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQG-SVLGARVIYDRESGRSRG 229
Query: 239 YGFVSFKSKKVAETAISAFQG 259
+GFV++ S + E A+S G
Sbjct: 230 FGFVTYGSSEEVEKAVSNLDG 250
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 1/102 (0%)
Query: 80 FVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-N 138
F + SS R R+ N+ W + LF + G+VL + +
Sbjct: 166 FREQSSGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESG 225
Query: 139 RNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
R+RG FVT GS +E A++NL+ + +GR ++V A+ ++
Sbjct: 226 RSRGFGFVTYGSSEEVEKAVSNLDGTDLDGRQIRVTVAEARQ 267
>gi|32482081|gb|AAP84396.1| FCA protein [Triticum aestivum]
Length = 719
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 81/166 (48%), Gaps = 13/166 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE---ATAA 157
+L +VP T+ +D+R LFE HG VL++ L K +G FV + +E A A
Sbjct: 117 KLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRA 176
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
L+N + ++V YA +K+ LF+A+L+ +A AK++ E F
Sbjct: 177 LHNQCTIPGAMGPVQVRYADGEKER-------HGSIEHKLFVASLNKQATAKEIEEIFAP 229
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
G V I D R+S G GFV F SK+ A A+++ G IM
Sbjct: 230 FGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIM 273
>gi|283838931|gb|ADB44797.1| FCA [Vitis vinifera]
Length = 281
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 86/167 (51%), Gaps = 13/167 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALN 159
+L +VP T+T EDIR LFE+HG VL++ L + + +G F+ + +EA A+
Sbjct: 102 AKLFVGSVPRTATEEDIRPLFEEHGNVLEVALIKDKRTGQQQGCCFIKYATSEEAERAIR 161
Query: 160 NLES-YEFEGRT--LKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFI 216
L + Y G ++V YA +++ V+ + LF+ +L+ +A K+++E F
Sbjct: 162 ALHNQYTLPGGVGPIEVRYADGERER-LGAVE------YKLFVGSLNKQATEKEVKEIFS 214
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
G V + D ++S G GFV+F + +A AI+A G M
Sbjct: 215 PYGQ--VEDVYLMRDELKQSRGCGFVNFSHRDMAMAAINALNGIYTM 259
>gi|312377573|gb|EFR24379.1| hypothetical protein AND_11086 [Anopheles darlingi]
Length = 405
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 82/162 (50%), Gaps = 9/162 (5%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSPDEA 154
+++ K +L + W +THE+++ F ++G V+D + + + R+RG FVT P+
Sbjct: 7 DDHEKGKLFVGGLSWETTHENLQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPENV 66
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF-NLFIANLSFEARAKDLRE 213
AL N + +GRT+ K NP +PK + +F+ L DLR
Sbjct: 67 DRALEN-GPHTLDGRTIDP-----KPCNPRSQHKPKRTGGYPKVFLGGLPPNITETDLRS 120
Query: 214 FFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
FF G +V+ +++ ++S G+GF+SF+++ E A +
Sbjct: 121 FFCRYG-NVMEVVIMYDQEKKKSRGFGFLSFENEVAVERATT 161
>gi|449440111|ref|XP_004137828.1| PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
gi|449483348|ref|XP_004156563.1| PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
Length = 278
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 80/170 (47%), Gaps = 19/170 (11%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNN 160
+L N+P+T + LFE G V +E+ + R+RG FVTM + E AA
Sbjct: 94 KLFVGNLPFTVDSAQLAGLFESAGQVERVEVIYDKTTGRSRGFGFVTMSTVGEVEAAAQQ 153
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPVQPKP----------FATFN-LFIANLSFEARAK 209
YE +GR L+VNY P PP + F N + ++NL++
Sbjct: 154 FNGYELDGRLLRVNYG------PPPPKRDDSSFRGSRNASRFDNRNRVHVSNLAWGVDDL 207
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
L F +G +V+ A+V++ + +S G+GFV++ S + AI + G
Sbjct: 208 TLENLFREKG-NVLEAKVVYDRDSGKSRGFGFVTYNSAEEVNEAIQSLDG 256
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAA 157
++ R+ N+ W + LF + G VL+ ++ ++RG FVT S +E A
Sbjct: 191 NRNRVHVSNLAWGVDDLTLENLFREKGNVLEAKVVYDRDSGKSRGFGFVTYNSAEEVNEA 250
Query: 158 LNNLESYEFEGRTLKVNYAKIK 179
+ +L+ + +GR ++V A+ +
Sbjct: 251 IQSLDGVDLDGRPIRVTQAEAR 272
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 195 FNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAI 254
LF+ NL F + L F S G V EVI+ RS G+GFV+ + E A
Sbjct: 93 LKLFVGNLPFTVDSAQLAGLFESAGQ-VERVEVIYDKTTGRSRGFGFVTMSTVGEVEAAA 151
Query: 255 SAFQGKVIMCLVIALSY 271
F G + ++ ++Y
Sbjct: 152 QQFNGYELDGRLLRVNY 168
>gi|356513816|ref|XP_003525605.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 299
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 85/164 (51%), Gaps = 4/164 (2%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNN 160
++ N+P+ E++ +LF Q GTV E+ + + +R+RG FVTM + +E A+
Sbjct: 118 KIFVGNLPFDIDSENLASLFGQAGTVEVAEVIYNRATDRSRGFGFVTMSTLEELKKAVEM 177
Query: 161 LESYEFEGRTLKVNYAKIKK-KNPFPPVQPKPFAT-FNLFIANLSFEARAKDLREFFISE 218
YE GR L VN A K + PP P+ F++ +++ NL +E L + F SE
Sbjct: 178 FSGYELNGRVLTVNKAAPKGAQPERPPRPPRSFSSGLRVYVGNLPWEVDDARLEQIF-SE 236
Query: 219 GWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
V A V++ RS G+GFV+ S+ AI+A G+ +
Sbjct: 237 HGKVEDARVVYDRETGRSRGFGFVTMSSETDMNDAIAALDGQSL 280
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAA 157
S R+ N+PW + +F +HG V D + + R+RG FVTM S + A
Sbjct: 212 SGLRVYVGNLPWEVDDARLEQIFSEHGKVEDARVVYDRETGRSRGFGFVTMSSETDMNDA 271
Query: 158 LNNLESYEFEGRTLKVNYAK 177
+ L+ +GR ++VN A+
Sbjct: 272 IAALDGQSLDGRAIRVNVAQ 291
>gi|449518978|ref|XP_004166512.1| PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
Length = 284
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 112/227 (49%), Gaps = 18/227 (7%)
Query: 41 HYNYFFPLSSSPFHAYTFPITPKKVSPFVFHFSATTQDPFV--DSSSAAAVNTEQREEEY 98
H++Y +S H FP+ + + + SA T++ V D S +++ ++ ++
Sbjct: 42 HFDYTKLVSLRHNHGERFPV----LFTVLDNESALTEEAIVEGDVKSEGSLSNQEVKKLA 97
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR-NRGLAFVTMGSPDEATAA 157
L N+P + ++ +F+ +GTVL E+S + + ++G +VTMGS + A +
Sbjct: 98 RPCELYVCNLPRSCDIAELVEMFKPYGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVS 157
Query: 158 LNNLESYEFEGRTLKVNYA---KIKKKNPFPPVQPKPFAT------FNLFIANLSFEARA 208
+ L+ + GR ++V +A KK+N + P + +++ NLS++ +
Sbjct: 158 ITALDGSDVGGREMRVRFAVDMNSKKRN-LNNLHSSPKKNIIYESPYKVYVGNLSWDVKP 216
Query: 209 KDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
DLR F G VVSA+V+ +S YGF+SF S + +IS
Sbjct: 217 GDLRNLFSRFG-TVVSAKVLNDRRAGKSRVYGFLSFSSAAERDASIS 262
>gi|449445537|ref|XP_004140529.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
Length = 286
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 110/226 (48%), Gaps = 16/226 (7%)
Query: 41 HYNYFFPLSSSPFHAYTFPITPKKVSPFVFHFSATTQDPFV--DSSSAAAVNTEQREEEY 98
H++Y +S H FP+ + + + SA T++ V D S +++ ++ ++
Sbjct: 44 HFDYTKLVSLRHNHGERFPV----LFTVLDNESALTEEAIVEGDVKSEGSLSNQEVKKLA 99
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR-NRGLAFVTMGSPDEATAA 157
L N+P + ++ +F+ +GTVL E+S + + ++G +VTMGS + A +
Sbjct: 100 RPCELYVCNLPRSCDIAELVEMFKPYGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVS 159
Query: 158 LNNLESYEFEGRTLKVNYA--KIKKKNPFPPVQPKPFAT------FNLFIANLSFEARAK 209
+ L+ + GR ++V +A KK + P + +++ NLS++ +
Sbjct: 160 ITALDGSDVGGREMRVRFAVDMNSKKRNLNNLHSSPKKNIIYESPYKVYVGNLSWDVKPG 219
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
DLR F G VVSA+V+ +S YGF+SF S + +IS
Sbjct: 220 DLRNLFSRFG-TVVSAKVLNDRRAGKSRVYGFLSFSSAAERDASIS 264
>gi|32482110|gb|AAP84407.1| FCA protein [Triticum aestivum]
Length = 736
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 81/166 (48%), Gaps = 13/166 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE---ATAA 157
+L +VP T+ +D+R LFE HG VL++ L K +G FV + +E A A
Sbjct: 119 KLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRA 178
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
L+N + ++V YA +K+ LF+A+L+ +A AK++ E F
Sbjct: 179 LHNQCTIPGAMGPVQVRYADGEKER-------HGSIEHKLFVASLNKQATAKEIEEIFAP 231
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
G V I D R+S G GFV F SK+ A A+++ G IM
Sbjct: 232 FGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPALVAMNSLSGTYIM 275
>gi|32482100|gb|AAP84402.1| FCA protein [Triticum aestivum]
Length = 736
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 81/166 (48%), Gaps = 13/166 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE---ATAA 157
+L +VP T+ +D+R LFE HG VL++ L K +G FV + +E A A
Sbjct: 119 KLFVGSVPRTANEDDVRPLFENHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRA 178
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
L+N + ++V YA +K+ LF+A+L+ +A AK++ E F
Sbjct: 179 LHNQCTIPGAMGPVQVRYADGEKER-------HGSIEHKLFVASLNKQATAKEIEEIFAP 231
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
G V I D R+S G GFV F SK+ A A+++ G IM
Sbjct: 232 FGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIM 275
>gi|443724444|gb|ELU12456.1| hypothetical protein CAPTEDRAFT_172701 [Capitella teleta]
Length = 359
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 86/181 (47%), Gaps = 11/181 (6%)
Query: 82 DSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH-SKNRN 140
+ S +AV QR+ + SKT L+ +P + T +DIR+LF G V +L + ++
Sbjct: 9 NGGSESAVQVLQRDMKDSKTNLIVNYLPQSMTQDDIRSLFSSIGEVESCKLIRDKATGQS 68
Query: 141 RGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIA 200
G FV ++A+ A+ +L + +T+KV+ A+ P + A NL+I+
Sbjct: 69 LGYGFVNYKRQEDASKAITSLNGLRLQNKTIKVSVAR-------PSSESIKGA--NLYIS 119
Query: 201 NLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
L DL F G +++++ ++ N S G GF+ F + AE AI G
Sbjct: 120 GLPKNMTQVDLENMFNHCG-NIITSRILCDQNTGISKGVGFIRFDQRHEAERAIKMLNGT 178
Query: 261 V 261
+
Sbjct: 179 I 179
>gi|32482090|gb|AAP84398.1| FCA protein [Triticum aestivum]
Length = 719
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 81/166 (48%), Gaps = 13/166 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE---ATAA 157
+L +VP T+ +D+R LFE HG VL++ L K +G FV + +E A A
Sbjct: 105 KLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRA 164
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
L+N + ++V YA +K+ LF+A+L+ +A AK++ E F
Sbjct: 165 LHNQCTIPGAMGPVQVRYADGEKER-------HGSIEHKLFVASLNKQATAKEIEEIFAP 217
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
G V I D R+S G GFV F SK+ A A+++ G IM
Sbjct: 218 FGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIM 261
>gi|32482074|gb|AAP84393.1| FCA protein [Triticum aestivum]
Length = 724
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 81/166 (48%), Gaps = 13/166 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE---ATAA 157
+L +VP T+ +D+R LFE HG VL++ L K +G FV + +E A A
Sbjct: 108 KLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRA 167
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
L+N + ++V YA +K+ LF+A+L+ +A AK++ E F
Sbjct: 168 LHNQCTIPGAMGPVQVRYADGEKER-------HGSIEHKLFVASLNKQATAKEIEEIFAP 220
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
G V I D R+S G GFV F SK+ A A+++ G IM
Sbjct: 221 FGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIM 264
>gi|359477208|ref|XP_002279515.2| PREDICTED: flowering time control protein FCA [Vitis vinifera]
Length = 785
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 83/166 (50%), Gaps = 13/166 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
+L +VP T+T EDIR LFE+HG VL++ L + + +G F+ + +EA A+
Sbjct: 119 KLFVGSVPRTATEEDIRPLFEEHGNVLEVALIKDKRTGQQQGCCFIKYATSEEAERAIRA 178
Query: 161 LES-YEFEGRT--LKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
L + Y G ++V YA +++ + LF+ +L+ +A K+++E F
Sbjct: 179 LHNQYTLPGGVGPIQVRYADGERER-------LGAVEYKLFVGSLNKQATEKEVKEIFSP 231
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
G V + D ++S G GFV F + +A AI+A G M
Sbjct: 232 YGQ--VEDVYLMRDELKQSRGCGFVKFSHRDMAMAAINALNGIYTM 275
>gi|32482108|gb|AAP84406.1| FCA protein [Triticum aestivum]
Length = 724
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 81/166 (48%), Gaps = 13/166 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE---ATAA 157
+L +VP T+ +D+R LFE HG VL++ L K +G FV + +E A A
Sbjct: 108 KLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRA 167
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
L+N + ++V YA +K+ LF+A+L+ +A AK++ E F
Sbjct: 168 LHNQCTIPGAMGPVQVRYADGEKER-------HGSIEHKLFVASLNKQATAKEIEEIFAP 220
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
G V I D R+S G GFV F SK+ A A+++ G IM
Sbjct: 221 FGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIM 264
>gi|32482147|gb|AAP84419.1| FCA-B2 [Triticum aestivum]
Length = 740
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 81/166 (48%), Gaps = 13/166 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE---ATAA 157
+L +VP T+ +D+R LFE HG VL++ L K +G FV + +E A A
Sbjct: 123 KLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRA 182
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
L+N + ++V YA +K+ LF+A+L+ +A AK++ E F
Sbjct: 183 LHNQCTIPGAMGPVQVRYADGEKER-------HGSIEHKLFVASLNKQATAKEIEEIFAP 235
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
G V I D R+S G GFV F SK+ A A+++ G IM
Sbjct: 236 FGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIM 279
>gi|32482102|gb|AAP84403.1| FCA protein [Triticum aestivum]
Length = 730
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 81/166 (48%), Gaps = 13/166 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEA---TAA 157
+L +VP T+ +D+R LFE HG VL++ L K +G FV + +EA A
Sbjct: 114 KLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERVIRA 173
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
L+N + ++V YA +K+ LF+A+L+ +A AK++ E F
Sbjct: 174 LHNQCTIPGAMGPVQVRYADGEKER-------HGSIEHKLFVASLNKQATAKEIEEIFAP 226
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
G V I D R+S G GFV F SK+ A A+++ G IM
Sbjct: 227 FGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIM 270
>gi|347966748|ref|XP_321180.5| AGAP001883-PA [Anopheles gambiae str. PEST]
gi|333469916|gb|EAA01735.5| AGAP001883-PA [Anopheles gambiae str. PEST]
Length = 396
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 79/175 (45%), Gaps = 18/175 (10%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS--------KNRNRGLA 144
Q + S+T L+ +P T T E+IR+LF G V ++L K ++ G
Sbjct: 66 QSSDNNSRTNLIVNYLPQTMTEEEIRSLFSSVGEVESVKLVRDKNVIYPGQPKGQSLGYG 125
Query: 145 FVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSF 204
FV P +A A+N L + + LKV++A+ + NL+I+ L
Sbjct: 126 FVNYHRPQDAEQAVNVLNGLRLQNKVLKVSFARPSSEG---------IKGANLYISGLPK 176
Query: 205 EARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
++L F G +++++ V+ D + G GF+ F +K AE AI A G
Sbjct: 177 TITQEELETIFRPYG-EIITSRVLIQDGNDKPKGVGFIRFDQRKEAERAIQALNG 230
>gi|32482096|gb|AAP84401.1| FCA protein [Triticum aestivum]
Length = 735
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 81/166 (48%), Gaps = 13/166 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE---ATAA 157
+L +VP T+ +D+R LFE HG VL++ L K +G FV + +E A A
Sbjct: 119 KLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRA 178
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
L+N + ++V YA +K+ LF+A+L+ +A AK++ E F
Sbjct: 179 LHNQCTIPGAMGPVQVRYADGEKER-------HGSIGHKLFVASLNKQATAKEIEEIFAP 231
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
G V I D R+S G GFV F SK+ A A+++ G IM
Sbjct: 232 FGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIM 275
>gi|32482140|gb|AAP84416.1| FCA protein, partial [Triticum aestivum]
Length = 740
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 81/166 (48%), Gaps = 13/166 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE---ATAA 157
+L +VP T+ +D+R LFE HG VL++ L K +G FV + +E A A
Sbjct: 121 KLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRA 180
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
L+N + ++V YA +K+ LF+A+L+ +A AK++ E F
Sbjct: 181 LHNQCTIPGAMGPVQVRYADGEKER-------HGSIEHKLFVASLNKQATAKEIEEIFAP 233
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
G V I D R+S G GFV F SK+ A A+++ G IM
Sbjct: 234 FGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIM 277
>gi|222142946|gb|ACI16484.2| flowering time control protein [Hordeum vulgare]
Length = 743
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 81/166 (48%), Gaps = 13/166 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE---ATAA 157
+L +VP T+ +D+R LFE HG VL++ L K +G FV + +E A A
Sbjct: 125 KLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRA 184
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
L+N + ++V YA +K+ LF+A+L+ +A AK++ E F
Sbjct: 185 LHNQCTIPGAMGPVQVRYADGEKER-------HGSIEHKLFVASLNKQATAKEIEEIFAP 237
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
G V I D R+S G GFV F SK+ A A+++ G IM
Sbjct: 238 FGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIM 281
>gi|32482112|gb|AAP84408.1| FCA protein [Triticum aestivum]
Length = 741
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 81/166 (48%), Gaps = 13/166 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE---ATAA 157
+L +VP T+ +D+R LFE HG VL++ L K +G FV + +E A A
Sbjct: 124 KLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRA 183
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
L+N + ++V YA +K+ LF+A+L+ +A AK++ E F
Sbjct: 184 LHNQCTIPGAMGPVQVRYADGEKER-------HGSIEHKLFVASLNKQATAKEIEEIFAP 236
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
G V I D R+S G GFV F SK+ A A+++ G IM
Sbjct: 237 FGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIM 280
>gi|32482373|gb|AAP84379.1| FCA protein [Triticum aestivum]
Length = 737
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 81/166 (48%), Gaps = 13/166 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEA---TAA 157
+L +VP T+ +D+R LFE HG VL++ L K +G FV + +EA A
Sbjct: 121 KLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERVIRA 180
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
L+N + ++V YA +K+ LF+A+L+ +A AK++ E F
Sbjct: 181 LHNQCTIPGAMGPVQVRYADGEKER-------HGSIEHKLFVASLNKQATAKEIEEIFAP 233
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
G V I D R+S G GFV F SK+ A A+++ G IM
Sbjct: 234 FGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIM 277
>gi|32482394|gb|AAP84386.1| FCA protein [Triticum aestivum]
Length = 735
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 81/166 (48%), Gaps = 13/166 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE---ATAA 157
+L +VP T+ +D+R LFE HG VL++ L K +G FV + +E A A
Sbjct: 119 KLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRA 178
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
L+N + ++V YA +K+ LF+A+L+ +A AK++ E F
Sbjct: 179 LHNQCTIPGAMGPVQVRYADGEKER-------HGSIEHKLFVASLNRQATAKEIEEIFAP 231
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
G V I D R+S G GFV F SK+ A A+++ G IM
Sbjct: 232 FGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIM 275
>gi|32482142|gb|AAP84417.1| FCA-A1 [Triticum aestivum]
gi|32482144|gb|AAP84418.1| FCA-A2 [Triticum aestivum]
Length = 741
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 81/166 (48%), Gaps = 13/166 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE---ATAA 157
+L +VP T+ +D+R LFE HG VL++ L K +G FV + +E A A
Sbjct: 125 KLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRA 184
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
L+N + ++V YA +K+ LF+A+L+ +A AK++ E F
Sbjct: 185 LHNQCTIPGAMGPVQVRYADGEKER-------HGSIEHKLFVASLNKQATAKEIEEIFAP 237
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
G V I D R+S G GFV F SK+ A A+++ G IM
Sbjct: 238 FGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIM 281
>gi|32482094|gb|AAP84400.1| FCA protein [Triticum aestivum]
Length = 737
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 81/166 (48%), Gaps = 13/166 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE---ATAA 157
+L +VP T+ +D+R LFE HG VL++ L K +G FV + +E A A
Sbjct: 120 KLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRA 179
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
L+N + ++V YA +K+ LF+A+L+ +A AK++ E F
Sbjct: 180 LHNQCTIPGAMGPVQVRYADGEKER-------HGSIEHKLFVASLNKQATAKEIEEIFAP 232
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
G V I D R+S G GFV F SK+ A A+++ G IM
Sbjct: 233 FGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIM 276
>gi|32482381|gb|AAP84380.1| FCA protein [Triticum aestivum]
Length = 721
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 80/166 (48%), Gaps = 13/166 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE---ATAA 157
+L +VP T+ +D+R LFE HG VL++ L K +G FV + +E A A
Sbjct: 105 KLFVGSVPRTANEDDVRPLFEGHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRA 164
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
L+N + ++V YA +K+ LF+A+L+ +A AK++ E F
Sbjct: 165 LHNQCTIPGAMGPVQVRYADGEKER-------HGSIEHKLFVASLNKQATAKEIEEIFAP 217
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
G V I D R+S G GFV F SK+ A A+ + G IM
Sbjct: 218 FGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMDSLSGTYIM 261
>gi|32482390|gb|AAP84384.1| FCA protein [Triticum aestivum]
Length = 737
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 81/166 (48%), Gaps = 13/166 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE---ATAA 157
+L +VP T+ +D+R LFE HG VL++ L K +G FV + +E A A
Sbjct: 121 KLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRA 180
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
L+N + ++V YA +K+ LF+A+L+ +A AK++ E F
Sbjct: 181 LHNQCTIPGAMGPVQVRYADGEKER-------HGSIEHKLFVASLNKQATAKEIEEIFAP 233
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
G V I D R+S G GFV F SK+ A A+++ G IM
Sbjct: 234 FGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIM 277
>gi|32482114|gb|AAP84409.1| FCA protein [Triticum aestivum]
Length = 736
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 81/166 (48%), Gaps = 13/166 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE---ATAA 157
+L +VP T+ +D+R LFE HG VL++ L K +G FV + +E A A
Sbjct: 120 KLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRA 179
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
L+N + ++V YA +K+ LF+A+L+ +A AK++ E F
Sbjct: 180 LHNQCTIPGAMGPVQVRYADGEKER-------HGSIEHKLFVASLNKQATAKEIEEIFAP 232
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
G V I D R+S G GFV F SK+ A A+++ G IM
Sbjct: 233 FGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIM 276
>gi|32482106|gb|AAP84405.1| FCA protein [Triticum aestivum]
Length = 735
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 81/166 (48%), Gaps = 13/166 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE---ATAA 157
+L +VP T+ +D+R LFE HG VL++ L K +G FV + +E A A
Sbjct: 119 KLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRA 178
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
L+N + ++V YA +K+ LF+A+L+ +A AK++ E F
Sbjct: 179 LHNQCTIPGAMGPVQVRYADGEKER-------HGSIEHKLFVASLNKQATAKEIEEIFAP 231
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
G V I D R+S G GFV F SK+ A A+++ G IM
Sbjct: 232 FGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIM 275
>gi|32482092|gb|AAP84399.1| FCA protein [Triticum aestivum]
Length = 740
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 81/166 (48%), Gaps = 13/166 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE---ATAA 157
+L +VP T+ +D+R LFE HG VL++ L K +G FV + +E A A
Sbjct: 125 KLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRA 184
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
L+N + ++V YA +K+ LF+A+L+ +A AK++ E F
Sbjct: 185 LHNQCTIPGAMGPVQVRYADGEKER-------HGSIEHKLFVASLNKQATAKEIEEIFAP 237
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
G V I D R+S G GFV F SK+ A A+++ G IM
Sbjct: 238 FGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIM 281
>gi|32482123|gb|AAP84412.1| FCA protein, partial [Triticum aestivum]
Length = 737
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 81/166 (48%), Gaps = 13/166 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE---ATAA 157
+L +VP T+ +D+R LFE HG VL++ L K +G FV + +E A A
Sbjct: 121 KLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRA 180
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
L+N + ++V YA +K+ LF+A+L+ +A AK++ E F
Sbjct: 181 LHNQCTIPGAMGPVQVRYADGEKER-------HGSIEHKLFVASLNKQATAKEIEEIFAP 233
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
G V I D R+S G GFV F SK+ A A+++ G IM
Sbjct: 234 FGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIM 277
>gi|32482079|gb|AAP84395.1| FCA protein [Triticum aestivum]
Length = 734
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 81/166 (48%), Gaps = 13/166 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE---ATAA 157
+L +VP T+ +D+R LFE HG VL++ L K +G FV + +E A A
Sbjct: 118 KLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRA 177
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
L+N + ++V YA +K+ LF+A+L+ +A AK++ E F
Sbjct: 178 LHNQCTIPGAMGPVQVRYADGEKER-------HGSIEHKLFVASLNKQATAKEIEEIFAP 230
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
G V I D R+S G GFV F SK+ A A+++ G IM
Sbjct: 231 FGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIM 274
>gi|21617920|gb|AAM66970.1| putative RNA-binding protein [Arabidopsis thaliana]
Length = 289
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 88/204 (43%), Gaps = 35/204 (17%)
Query: 94 REEEYSKT-RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGS 150
+E+ +S +L N+P+ + LFE G V +E+ ++ K R+RG FVTM S
Sbjct: 83 KEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEV-IYDKITGRSRGFGFVTMSS 141
Query: 151 PDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF--------------- 195
E AA YE +GR L+VN P PP + F+
Sbjct: 142 VSEVEAAAQQFNGYELDGRPLRVNAG------PPPPKREDGFSRGPRSSFGSSGSGYGGG 195
Query: 196 ---------NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKS 246
+++ NLS+ L F +G VV A VI+ + RS G+GFV++ S
Sbjct: 196 GGSGAGSGNRVYVGNLSWGVDDMALESLFSEQG-KVVEARVIYDRDSGRSKGFGFVTYDS 254
Query: 247 KKVAETAISAFQGKVIMCLVIALS 270
+ + AI + G + I +S
Sbjct: 255 SQEVQNAIKSLDGADLDGRQIRVS 278
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAALN 159
R+ N+ W + +LF + G V++ + R++G FVT S E A+
Sbjct: 204 NRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIK 263
Query: 160 NLESYEFEGRTLKVNYAKIK 179
+L+ + +GR ++V+ A+ +
Sbjct: 264 SLDGADLDGRQIRVSEAEAR 283
>gi|15228102|ref|NP_181259.1| ribonucleoprotein [Arabidopsis thaliana]
gi|12230623|sp|Q9ZUU4.1|ROC1_ARATH RecName: Full=Ribonucleoprotein At2g37220, chloroplastic; Flags:
Precursor
gi|13877809|gb|AAK43982.1|AF370167_1 putative RNA-binding protein [Arabidopsis thaliana]
gi|4056477|gb|AAC98043.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|15081717|gb|AAK82513.1| At2g37220/F3G5.1 [Arabidopsis thaliana]
gi|16323482|gb|AAL15235.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|20197716|gb|AAM15222.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|330254275|gb|AEC09369.1| ribonucleoprotein [Arabidopsis thaliana]
Length = 289
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 88/204 (43%), Gaps = 35/204 (17%)
Query: 94 REEEYSKT-RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGS 150
+E+ +S +L N+P+ + LFE G V +E+ ++ K R+RG FVTM S
Sbjct: 83 KEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEV-IYDKITGRSRGFGFVTMSS 141
Query: 151 PDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF--------------- 195
E AA YE +GR L+VN P PP + F+
Sbjct: 142 VSEVEAAAQQFNGYELDGRPLRVNAG------PPPPKREDGFSRGPRSSFGSSGSGYGGG 195
Query: 196 ---------NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKS 246
+++ NLS+ L F +G VV A VI+ + RS G+GFV++ S
Sbjct: 196 GGSGAGSGNRVYVGNLSWGVDDMALESLFSEQG-KVVEARVIYDRDSGRSKGFGFVTYDS 254
Query: 247 KKVAETAISAFQGKVIMCLVIALS 270
+ + AI + G + I +S
Sbjct: 255 SQEVQNAIKSLDGADLDGRQIRVS 278
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAALN 159
R+ N+ W + +LF + G V++ + R++G FVT S E A+
Sbjct: 204 NRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIK 263
Query: 160 NLESYEFEGRTLKVNYAKIK 179
+L+ + +GR ++V+ A+ +
Sbjct: 264 SLDGADLDGRQIRVSEAEAR 283
>gi|148908208|gb|ABR17219.1| unknown [Picea sitchensis]
Length = 296
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 86/166 (51%), Gaps = 8/166 (4%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAA 157
++T+L N+P + + LF++ GTV E+ + + +RG AFVTM + EA AA
Sbjct: 100 NRTKLYVGNLPRSCDSAQLTHLFQEFGTVESAEVVRNEETGLSRGFAFVTMSTVIEAKAA 159
Query: 158 LNNLESYEFEGRTLKVNY--AKIKKKNPFPPVQPKPFAT-FNLFIANLSFEARAKDLREF 214
+ L+ + GR + VN+ A + + N + + T + LF NL++ + + LR+
Sbjct: 160 IEKLQGSDLGGRDMIVNFPAAVLSRGN---KTEDEYVETPYQLFAGNLAWSVKNEILRDL 216
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
F SE V+ A+V+++ +GFV S+ E AI + GK
Sbjct: 217 F-SEHGTVLGAKVVYNSKGGVPRAFGFVCLSSQSEMEAAIVSLNGK 261
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 55/104 (52%), Gaps = 3/104 (2%)
Query: 77 QDPFVDSSSAAAVNTEQREEEYSKT--RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM 134
+D V+ +A + E+EY +T +L A N+ W+ +E +R LF +HGTVL ++
Sbjct: 171 RDMIVNFPAAVLSRGNKTEDEYVETPYQLFAGNLAWSVKNEILRDLFSEHGTVLGAKVVY 230
Query: 135 HSKNR-NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177
+SK R FV + S E AA+ +L EF GR L V +
Sbjct: 231 NSKGGVPRAFGFVCLSSQSEMEAAIVSLNGKEFHGRNLVVRQVR 274
>gi|32482371|gb|AAP84378.1| FCA protein [Triticum aestivum]
Length = 736
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 84/169 (49%), Gaps = 19/169 (11%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRN----RGLAFVTMGSPDE---A 154
+L +VP T+ +D+R LFE HG VL++ L ++RN +G FV + +E A
Sbjct: 120 KLFVGSVPRTANEDDVRPLFEDHGDVLEVAL---IRDRNTGEQQGCCFVKYATSEEAERA 176
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
AL+N + ++V YA +K+ LF+A+L+ +A AK++ E
Sbjct: 177 IRALHNQCTIPGAMGPVQVRYADGEKER-------HGSIEHKLFVASLNKQATAKEIEEI 229
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
F G V I D R+S G GFV F SK+ A A+++ G IM
Sbjct: 230 FAPFGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIM 276
>gi|254567738|ref|XP_002490979.1| Poly(A) binding protein, part of the 3'-end RNA-processing complex,
mediates interactions between th [Komagataella pastoris
GS115]
gi|238030776|emb|CAY68699.1| Poly(A) binding protein, part of the 3'-end RNA-processing complex,
mediates interactions between th [Komagataella pastoris
GS115]
gi|328352488|emb|CCA38887.1| Polyadenylate-binding protein, cytoplasmic and nuclear
[Komagataella pastoris CBS 7435]
Length = 626
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 93/197 (47%), Gaps = 15/197 (7%)
Query: 87 AAVNTEQREEEYSK--TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLA 144
A + E R +E K T + +N ST +++R LFE +G + I L + S+ N+G
Sbjct: 217 AKKDRESRFQEMIKNYTNVFVKNFDTESTEDELRELFESYGPITSIHLQVDSEGHNKGFG 276
Query: 145 FVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQP---------KPFATF 195
FV D+A A+ L E++G+ L V A+ K + + + + +
Sbjct: 277 FVNFAEHDDAVKAVEALNDKEYKGKPLYVGRAQKKNERVHELTKKYEADRLEKLQKYQSV 336
Query: 196 NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
NLFI NL L E F G + SA+V+ +N +S G+GFV + + A AIS
Sbjct: 337 NLFIKNLDESIDDARLEEEFKPFGT-ITSAKVMLDEN-GKSRGFGFVCLSTPEEATKAIS 394
Query: 256 AFQGKVIMC--LVIALS 270
+++ L +AL+
Sbjct: 395 EMNQRMVANKPLYVALA 411
>gi|32482388|gb|AAP84383.1| FCA protein [Triticum aestivum]
Length = 710
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 81/166 (48%), Gaps = 13/166 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE---ATAA 157
+L +VP T+ +D+R LFE HG VL++ L K +G FV + +E A A
Sbjct: 119 KLFVGSVPRTANEDDVRPLFEYHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRA 178
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
L+N + ++V YA +K+ LF+A+L+ +A AK++ E F
Sbjct: 179 LHNQCTIPGAMGPVQVRYADGEKER-------HGSIEHKLFVASLNKQATAKEIEEIFAP 231
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
G V I D R+S G GFV F SK+ A A+++ G IM
Sbjct: 232 FGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIM 275
>gi|32482059|gb|AAP84387.1| FCA protein [Triticum aestivum]
Length = 728
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 82/168 (48%), Gaps = 17/168 (10%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE---ATAA 157
+L +VP T+ +D+R LFE HG VL++ L K +G FV + +E A A
Sbjct: 112 KLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRA 171
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFN--LFIANLSFEARAKDLREFF 215
L+N + ++V YA +K+ + LF+A+L+ +A AK++ E F
Sbjct: 172 LHNQCTLPGAMGPVQVRYADGEKER---------HGSIEHILFVASLNKQATAKEIEEIF 222
Query: 216 ISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
G V I D R+S G GFV F SK+ A A+++ G IM
Sbjct: 223 APFGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIM 268
>gi|32482065|gb|AAP84389.1| FCA protein [Triticum aestivum]
Length = 739
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 81/166 (48%), Gaps = 13/166 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE---ATAA 157
+L +VP T+ +D+R LFE HG VL++ L K +G FV + +E A A
Sbjct: 124 KLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRA 183
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
L+N + ++V YA +K+ LF+A+L+ +A AK++ E F
Sbjct: 184 LHNQCTIPGAMGPVQVRYADGEKER-------HGSIEHKLFVASLNKQATAKEIEEIFAP 236
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
G V + D R+S G GFV F SK+ A A+++ G IM
Sbjct: 237 FGH--VEDVYVMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIM 280
>gi|365983576|ref|XP_003668621.1| hypothetical protein NDAI_0B03440 [Naumovozyma dairenensis CBS 421]
gi|343767388|emb|CCD23378.1| hypothetical protein NDAI_0B03440 [Naumovozyma dairenensis CBS 421]
Length = 499
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 79/161 (49%), Gaps = 8/161 (4%)
Query: 112 STHEDI-RALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRT 170
S +ED+ + F+ G + D+++ + KN+N AFV +A AL L + E +
Sbjct: 97 SINEDLLKQYFQVGGQITDVKIMVDKKNQNVNYAFVEYLKSHDANVALQTLNGIQIENKI 156
Query: 171 LKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFH 230
+K+N+A ++N TFNLF+ +L+ + + L F + A V++
Sbjct: 157 IKINWAFQSQQN------LNSNDTFNLFVGDLNIDVDDETLSSNF-KNFPSYIQAHVMWD 209
Query: 231 DNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271
RS GYGFVSF + A+ A+ QGK I I +++
Sbjct: 210 MQTSRSRGYGFVSFADRDQAQNAMDTMQGKEINGRPIRINW 250
>gi|32482130|gb|AAP84415.1| FCA protein, partial [Triticum aestivum]
Length = 743
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 81/166 (48%), Gaps = 13/166 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE---ATAA 157
+L +VP T+ +D+R LFE HG VL++ L K +G FV + +E A A
Sbjct: 127 KLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRA 186
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
L+N + ++V YA +K+ LF+A+L+ +A AK++ E F
Sbjct: 187 LHNQCTIPGAMGPVQVRYADGEKER-------HGSIEHKLFVASLNKQATAKEIGEIFAP 239
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
G V I D R+S G GFV F SK+ A A+++ G IM
Sbjct: 240 FGH--VEDVYIMKDGMRQSRGSGFVKFSSKEPALAAMNSLSGTYIM 283
>gi|32482069|gb|AAP84391.1| FCA protein [Triticum aestivum]
Length = 732
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 79/161 (49%), Gaps = 13/161 (8%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE---ATAALNNLE 162
+VP T+ +D+R LFE HG VL++ L K +G FV + +E A AL+N
Sbjct: 121 SVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRALHNQC 180
Query: 163 SYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDV 222
+ ++V YA +K+ LF+A+L+ +A AK++ E F G
Sbjct: 181 TIPGAMGPVQVRYADGEKER-------HGSIEHKLFVASLNKQATAKEIEEIFAPFGH-- 231
Query: 223 VSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
V I D R+S G GFV F SK+ A A+++ G IM
Sbjct: 232 VEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIM 272
>gi|388582374|gb|EIM22679.1| RNA-binding domain-containing protein, partial [Wallemia sebi CBS
633.66]
Length = 202
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 92/207 (44%), Gaps = 36/207 (17%)
Query: 83 SSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRG 142
++ A + R+ +T L N+P+ +D++ LF + GTVL ++++ NR++G
Sbjct: 2 NTPGAGIGASGRD---GRTHLFVGNLPYRVRWQDLKDLFRKAGTVLRADVALGLDNRSKG 58
Query: 143 LAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKP----------- 191
V MGS +A A+ Y ++ RTL+V ++ + P Q +P
Sbjct: 59 YGNVLMGSEIDAAKAIELYNGYVWQTRTLEVRPDRLPPEYDLPGPQSQPHNQTIRPARTL 118
Query: 192 ------------------FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIF-HDN 232
N+F+ NL + + ++L++ F + G +V+ AEV HD
Sbjct: 119 RALGSSPPANLATASTPSLTNRNIFVGNLPYNMQWQELKDTFRAAG-NVIRAEVATNHDG 177
Query: 233 PRRSAGYGFVSFKSKKVAETAISAFQG 259
S GYG ++F + A + F G
Sbjct: 178 --TSKGYGIITFADESEAIQGVQMFDG 202
>gi|32482085|gb|AAP84397.1| FCA protein [Triticum aestivum]
Length = 740
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 81/166 (48%), Gaps = 13/166 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE---ATAA 157
+L +VP T+ +D+R LFE HG VL++ L K +G FV + +E A A
Sbjct: 124 KLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYTTSEEAERAIRA 183
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
L+N + ++V YA +K+ LF+A+L+ +A AK++ E F
Sbjct: 184 LHNQCTIPGAMGPVQVRYADGEKER-------HGSIEHKLFVASLNKQATAKEIEEIFAP 236
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
G V I D R+S G GFV F SK+ A A+++ G IM
Sbjct: 237 FGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIM 280
>gi|388621|gb|AAA33039.1| RNA-binding protein [Mesembryanthemum crystallinum]
Length = 289
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 84/171 (49%), Gaps = 5/171 (2%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
+L N+P+ E + +FE G V E+ + + +R+RG FVTM + +EA A+
Sbjct: 112 KLFVGNLPFDVDSEKLAQIFEGAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEL 171
Query: 161 LESYEFEGRTLKVNYAKIKKKNP-FPPVQPKPFATFNLFIANLSFEARAKDLREFFISEG 219
+E GR L VN A + P P + +P +F +++ NL ++ L + F SE
Sbjct: 172 YHKFEVNGRFLTVNKAAPRGSRPERAPREYEP--SFRVYVGNLPWDVDDARLEQVF-SEH 228
Query: 220 WDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALS 270
V+SA V+ RS G+ FV+ S+ AI A G+ + I ++
Sbjct: 229 GKVLSARVVSDRETGRSRGFAFVTMASESEMNEAIGALDGQTLEGRAIRVN 279
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIEL-SMHSKNRNRGLAFVTMGSPDEATAALNN 160
R+ N+PW + +F +HG VL + S R+RG AFVTM S E A+
Sbjct: 206 RVYVGNLPWDVDDARLEQVFSEHGKVLSARVVSDRETGRSRGFAFVTMASESEMNEAIGA 265
Query: 161 LESYEFEGRTLKVNYAKIKKKNPF 184
L+ EGR ++VN A+ + + F
Sbjct: 266 LDGQTLEGRAIRVNVAEERPRRSF 289
>gi|32482367|gb|AAP84376.1| FCA protein [Triticum aestivum]
Length = 735
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 81/166 (48%), Gaps = 13/166 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE---ATAA 157
+L +VP T+ +D+R LFE HG VL++ L K +G FV + +E A A
Sbjct: 119 KLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCRFVKYATSEEAERAIRA 178
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
L+N + ++V YA +K+ LF+A+L+ +A AK++ E F
Sbjct: 179 LHNQCTIPGAMGPVQVRYADGEKER-------HGSIEHKLFVASLNKQATAKEIEEIFAP 231
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
G V I D R+S G GFV F SK+ A A+++ G IM
Sbjct: 232 FGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIM 275
>gi|225440003|ref|XP_002281642.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic isoform 1 [Vitis
vinifera]
Length = 288
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 79/186 (42%), Gaps = 37/186 (19%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAALN 159
+L N+P+ + LFEQ G V +E+ ++ K R+RG FVTM + +E AA
Sbjct: 91 KLFVGNLPFNVDSAGLAGLFEQAGNVEMVEV-IYDKITGRSRGFGFVTMSTVEEVEAAAQ 149
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQ----------------------PKPFATFN- 196
YE EGR L+VN PP + P+ A N
Sbjct: 150 QFNGYELEGRQLRVNSGP-------PPARRENSNFRGENSNFRGENTNFRGPRGGANLNS 202
Query: 197 ---LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETA 253
+++ NLS+ L F SE V A VI+ RS G+GFV++ S + A
Sbjct: 203 TNRIYVGNLSWGVDDLALETLF-SEQGKVTEARVIYDRETGRSRGFGFVTYNSAEEVNRA 261
Query: 254 ISAFQG 259
I + G
Sbjct: 262 IESLDG 267
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAA 157
S R+ N+ W + LF + G V + + + R+RG FVT S +E A
Sbjct: 202 STNRIYVGNLSWGVDDLALETLFSEQGKVTEARVIYDRETGRSRGFGFVTYNSAEEVNRA 261
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPF 184
+ +L+ + GR+++V A+ + + F
Sbjct: 262 IESLDGVDLNGRSIRVTMAEARPRRQF 288
>gi|32482383|gb|AAP84381.1| FCA protein [Triticum aestivum]
Length = 737
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 80/166 (48%), Gaps = 13/166 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE---ATAA 157
+L +VP T+ +D+R LFE HG VL++ L K +G FV + +E A A
Sbjct: 121 KLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRA 180
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
L+N + ++V YA +K+ LF+A+L+ +A AK++ E F
Sbjct: 181 LHNQCTIPGAMGPVQVRYADGEKER-------HGSIEHKLFVASLNKQATAKEIGEIFAP 233
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
G V I D R+S G GFV F SK+ A A ++ G IM
Sbjct: 234 FGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPALAATNSLSGTYIM 277
>gi|32482392|gb|AAP84385.1| FCA protein [Triticum aestivum]
Length = 738
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 80/166 (48%), Gaps = 13/166 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
+L +VP T+ +D R LFE HG VL++ L K +G FV + +EA A+
Sbjct: 123 KLFVGSVPRTANEDDARPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRT 182
Query: 161 LESY-EFEGRT--LKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
L + G ++V YA +K+ LF+A+L+ +A AK++ E F
Sbjct: 183 LHNQCTIPGAMGPVQVRYADGEKER-------HGSIEHKLFVASLNRQATAKEIEEIFAP 235
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
G V I D R+S G GFV F SK+ A A+++ G IM
Sbjct: 236 FGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIM 279
>gi|1350820|sp|P49313.1|ROC1_NICPL RecName: Full=30 kDa ribonucleoprotein, chloroplastic; AltName:
Full=CP-RBP30; Flags: Precursor
gi|19708|emb|CAA46234.1| RNA binding protein 30 [Nicotiana plumbaginifolia]
Length = 279
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 88/191 (46%), Gaps = 32/191 (16%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAALN 159
++ N+ +++ + LFE+ G V +E+ ++ K R+RG FVTM S +E AA
Sbjct: 88 KIFVGNLLFSADSAALAELFERAGNVEMVEV-IYDKLTGRSRGFGFVTMSSKEEVEAACQ 146
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF--------------------NLFI 199
YE +GR L+VN PP + + ++F +++
Sbjct: 147 QFNGYELDGRALRVNSG--------PPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYV 198
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
NL++ +D E SE VV A+V++ + RS G+GFV++ S + AI + G
Sbjct: 199 GNLAWGV-DQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDG 257
Query: 260 KVIMCLVIALS 270
+ I +S
Sbjct: 258 VDLNGRAIRVS 268
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAALN 159
R+ N+ W + + LF + G V+D ++ R+RG FVT S +E A+
Sbjct: 194 NRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIE 253
Query: 160 NLESYEFEGRTLKVNYAKIK 179
+L+ + GR ++V+ A+ +
Sbjct: 254 SLDGVDLNGRAIRVSPAEAR 273
>gi|167523433|ref|XP_001746053.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163775324|gb|EDQ88948.1| predicted protein [Monosiga brevicollis MX1]
Length = 635
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 94/216 (43%), Gaps = 27/216 (12%)
Query: 47 PLSSSPFHAYTFPITPKKVSPFVFHFSATTQDPFVDSSS--AAAVNTEQREEEYSKTRLV 104
P S++ H Y P F +D D+SS + N + + SKT L+
Sbjct: 143 PTSNATHHGYDIP-----------PFKGKDEDDAGDASSPTSNGSNGQFNQAPVSKTNLI 191
Query: 105 AQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAALNNLE 162
+P + + +D+RALF +G + +L M+ + ++ G FV + AT A + L
Sbjct: 192 INYIPNSFSQDDLRALFGAYGALKSCKL-MYDRATGKSLGYGFVEYEDENGATKAADALN 250
Query: 163 SYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDV 222
++ E + LKV++A+ NL+I L + L + F S G D+
Sbjct: 251 EFQIENKRLKVSFARPSSST---------ITNANLYIKGLPTTINEQSLTDMFSSCG-DI 300
Query: 223 VSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ 258
+S V++ N G GFV F K AE AI F
Sbjct: 301 ISVRVLYDRN-GTPKGVGFVRFDQHKEAENAIQRFN 335
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYE 165
N+P T +D+ AL Q+G V + + + ++G AF+T+ + +AT + NL +
Sbjct: 447 NLPPACTEQDLTALVGQYGNVRSASIVRYKETGSSKGYAFITVATNADATNVIRNLNNMR 506
Query: 166 FEGRTLKVNYAKIKKK 181
+ GR L+V++ K ++
Sbjct: 507 YNGRDLQVSFKKQSRR 522
>gi|260821286|ref|XP_002605964.1| hypothetical protein BRAFLDRAFT_92208 [Branchiostoma floridae]
gi|229291301|gb|EEN61974.1| hypothetical protein BRAFLDRAFT_92208 [Branchiostoma floridae]
Length = 330
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 80/166 (48%), Gaps = 11/166 (6%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEAT 155
E SKT L+ +P T T ++I++LF G V +L ++ G FV P +A
Sbjct: 23 EDSKTNLIVNYLPQTMTQDEIKSLFSSIGEVESCKLIRDKVTGQSLGYGFVNYVKPQDAE 82
Query: 156 AALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFF 215
A+N L + +T+KV+YA+ P Q A NL+++ L +DL F
Sbjct: 83 KAINTLNGLRLQAKTIKVSYAR-------PSSQAIKDA--NLYVSGLPKTMTQQDLEGLF 133
Query: 216 ISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKV 261
+ G ++++ ++F +S G GFV F + AE AI+ G +
Sbjct: 134 EAHGR-IITSRILFDPVTGQSRGVGFVRFDQRVEAERAITELNGHI 178
>gi|32482118|gb|AAP84411.1| FCA protein, partial [Triticum aestivum]
Length = 736
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 81/166 (48%), Gaps = 13/166 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAAL-- 158
+L +VP T+ +D+R LFE HG VL++ L K +G FV + +EA A+
Sbjct: 121 KLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRGRKTGEQQGCCFVKYATSEEAERAIRA 180
Query: 159 -NNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N + ++V YA +K+ LF+A+L+ +A AK++ E F
Sbjct: 181 QHNQCTIPGAMGPVQVRYADGEKER-------HGSIEHKLFVASLNKQATAKEIEEIFAP 233
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
G V I D R+S G GFV F SK+ A A+++ G IM
Sbjct: 234 FGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGAYIM 277
>gi|401838326|gb|EJT42016.1| PUB1-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 459
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 92/214 (42%), Gaps = 28/214 (13%)
Query: 66 SPFVFHFSATTQDPFVDSSSAAAVNTEQREE-------------------EYSKTRLVAQ 106
+P V SA DP + + + VN+ Q E+ E S L
Sbjct: 22 APLVAEASAPV-DPSAEQNVSGEVNSTQVEDDQGESDPSVVPANAITGGRETSDRVLYVG 80
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEF 166
N+ T + ++ F+ G + +I++ + N+N AFV +A AL L +
Sbjct: 81 NLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQI 140
Query: 167 EGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAE 226
E +K+N+A F Q TFNLF+ +L+ + LR F + +S
Sbjct: 141 ENNIVKINWA-------FQSQQSSSDDTFNLFVGDLNVNVDDETLRNAF-KDFPSYLSGH 192
Query: 227 VIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
V++ S GYGFVSF S+ A+TA+ QG+
Sbjct: 193 VMWDMQTGSSRGYGFVSFTSQDDAQTAMDTMQGQ 226
>gi|32482369|gb|AAP84377.1| FCA protein [Triticum aestivum]
Length = 727
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 81/166 (48%), Gaps = 13/166 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE---ATAA 157
+L +VP T+ +D+R LFE HG VL++ L K +G FV + +E A A
Sbjct: 115 KLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGRCFVKYATSEEAERAIRA 174
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
L+N + ++V YA +++ LF+A+L+ +A AK++ E F
Sbjct: 175 LHNQCTIPGAMGPVQVRYADGERER-------HGSIEHKLFVASLNKQATAKEIEEIFAP 227
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
G V I D R+S G GFV F SK+ A A+++ G IM
Sbjct: 228 FGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIM 271
>gi|255636284|gb|ACU18482.1| unknown [Glycine max]
Length = 280
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 84/163 (51%), Gaps = 4/163 (2%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNN 160
++ N+P+ E++ +LF Q GTV E+ + + +R+RG FVTM + +E A+
Sbjct: 118 KIFVGNLPFDIDSENLASLFGQAGTVEVAEVIYNRATDRSRGFGFVTMSTLEELKKAVEM 177
Query: 161 LESYEFEGRTLKVNYAKIKK-KNPFPPVQPKPFAT-FNLFIANLSFEARAKDLREFFISE 218
YE GR L VN A K + PP P+ F++ +++ NL +E L + F SE
Sbjct: 178 FSGYELNGRVLTVNKAAPKGAQPERPPRPPRSFSSGLRVYVGNLPWEVDDARLEQIF-SE 236
Query: 219 GWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKV 261
V A V++ RS G+GFV+ S+ AI+A +V
Sbjct: 237 HGKVEDARVVYDRETGRSRGFGFVTMSSETDMNDAIAALDVRV 279
>gi|242042437|ref|XP_002468613.1| hypothetical protein SORBIDRAFT_01g048990 [Sorghum bicolor]
gi|241922467|gb|EER95611.1| hypothetical protein SORBIDRAFT_01g048990 [Sorghum bicolor]
Length = 253
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 85/176 (48%), Gaps = 14/176 (7%)
Query: 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRN-RGLAFVTMGSPDEATA 156
Y ++VA +P+T+T DIR LFE +G + ++LS + N RGLAF+ + ++A
Sbjct: 71 YEFGKVVASGMPYTTTEADIRKLFEFYGPLQSVQLSRFPDSGNFRGLAFICFETNEDAIK 130
Query: 157 ALNNLESYEFEGRTLKVNYAKI------KKKNPFPPVQPKPFATFNLFIANLSFEARAKD 210
+L L+ ++ R ++V ++ K+K F K + ++ NLS+ KD
Sbjct: 131 SL-ELDGFKIGSRYMRVERCRVTATSNKKRKAEFQTDPKKSEGCLSAYVGNLSWNVTEKD 189
Query: 211 LREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAI----SAFQGKVI 262
LR+FF S + S S G+ V F+ + E A+ S QG+ +
Sbjct: 190 LRDFFRSS--KIASVRFAIDKRTGGSRGFCHVDFQDDESLEKAVAMNQSELQGRPV 243
>gi|260943169|ref|XP_002615883.1| hypothetical protein CLUG_04765 [Clavispora lusitaniae ATCC 42720]
gi|238851173|gb|EEQ40637.1| hypothetical protein CLUG_04765 [Clavispora lusitaniae ATCC 42720]
Length = 385
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 79/175 (45%), Gaps = 3/175 (1%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATA 156
E S+ L +P + + + F G V +++ + AFV A A
Sbjct: 40 EISRKVLYVGGLPKSINEDALNEKFSASGPVFSVKILNDKNKQGFNYAFVEFVDEAGAAA 99
Query: 157 ALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFI 216
AL FE LK+NYA + + F Q T+N+F+ +LS E + L +FF
Sbjct: 100 ALQEFNGSSFENSMLKINYAY--QSSTFNATQNSDDPTYNIFVGDLSPEVDDESLHKFF- 156
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271
S + A V++ RS GYGFV+F + AETA+S GKV+ I ++
Sbjct: 157 SAFESLKQAHVMWDMQTSRSRGYGFVTFANLADAETALSTMNGKVLNGRAIRCNW 211
>gi|300120416|emb|CBK19970.2| unnamed protein product [Blastocystis hominis]
Length = 639
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 53/80 (66%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNL 161
RL QN+P++ E++R Q+G ++D+ + ++SK ++G AFVT P++A AA+ L
Sbjct: 108 RLFLQNIPYSCKEEELREFISQYGEIVDVFIPLNSKRESKGYAFVTFMFPEQAIAAIEKL 167
Query: 162 ESYEFEGRTLKVNYAKIKKK 181
+ F+GR L+VN A +KK+
Sbjct: 168 DGSVFQGRVLRVNVANVKKE 187
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%)
Query: 95 EEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEA 154
E+ +T+L+ +NVP+ ++ ++R LF G + + +RG AFV S D+A
Sbjct: 544 EDGEKRTKLLVRNVPFEASRSELRELFGSFGQLKSLRQPKKFDGTSRGFAFVEYVSSDDA 603
Query: 155 TAALNNLESYEFEGRTLKVNYAK 177
A+ L S GR L V YAK
Sbjct: 604 KTAIKALASTHLLGRKLVVEYAK 626
Score = 44.3 bits (103), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 78/190 (41%), Gaps = 20/190 (10%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIEL----SMHSKNRNRGLAFVTMGSP 151
E+ S T + +N+ W +T +R LF + I L + ++ G F +
Sbjct: 441 EDSSNTTIYIKNLNWKTTEAAVRKLFNSVPGLKSITLPKKKTPSGESLPMGFGFAVYETR 500
Query: 152 DEATAALNNLESYEFEGRTLKVNYAK------IKKKNPFPPVQPKPFATFNLFIANLSFE 205
+A ALN L +G L ++++ KK+ + L + N+ FE
Sbjct: 501 AQALRALNQLSGKALDGHVLDLSFSARSEIVTTKKRKLTARAEEDGEKRTKLLVRNVPFE 560
Query: 206 ARAKDLREFFISEGWDVVSAEVIFHDNPRR----SAGYGFVSFKSKKVAETAISAFQGKV 261
A +LRE F S G ++ P++ S G+ FV + S A+TAI A
Sbjct: 561 ASRSELRELFGSFG------QLKSLRQPKKFDGTSRGFAFVEYVSSDDAKTAIKALASTH 614
Query: 262 IMCLVIALSY 271
++ + + Y
Sbjct: 615 LLGRKLVVEY 624
>gi|32482061|gb|AAP84388.1| FCA protein [Triticum aestivum]
Length = 737
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 80/166 (48%), Gaps = 13/166 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE---ATAA 157
+L +VP T+ +D+R LFE HG VL++ L K +G FV + +E A A
Sbjct: 121 KLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIKA 180
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
L+N + ++V YA +K+ LF+A+L+ +A AK++ E F
Sbjct: 181 LHNQCTIPGAMGPVQVRYADGEKER-------HGSIEHKLFVASLNKQATAKEIEEIFAP 233
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
G V I D R+S G GF F SK+ A A+++ G IM
Sbjct: 234 FGH--VEDVYIMKDGMRQSRGCGFAKFSSKEPALAAMNSLSGTYIM 277
>gi|347966814|ref|XP_321133.5| AGAP001930-PA [Anopheles gambiae str. PEST]
gi|347966816|ref|XP_003435970.1| AGAP001930-PB [Anopheles gambiae str. PEST]
gi|333469887|gb|EAA00972.5| AGAP001930-PA [Anopheles gambiae str. PEST]
gi|333469888|gb|EGK97443.1| AGAP001930-PB [Anopheles gambiae str. PEST]
Length = 412
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 81/162 (50%), Gaps = 9/162 (5%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSPDEA 154
+++ K +L + W ++HE+++ F ++G V+D + + + R+RG FVT P+
Sbjct: 13 DDHEKGKLFVGGLSWETSHENLQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPENV 72
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF-NLFIANLSFEARAKDLRE 213
AL N + +GRT+ K NP +PK + +F+ L DLR
Sbjct: 73 ERALEN-GPHTLDGRTIDP-----KPCNPRSQHKPKRTGGYPKVFLGGLPPNITETDLRS 126
Query: 214 FFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
FF G V+ +++ ++S G+GF+SF+++ E A +
Sbjct: 127 FFCRYG-TVMEVVIMYDQEKKKSRGFGFLSFENESAVERATT 167
>gi|32482104|gb|AAP84404.1| FCA protein [Triticum aestivum]
Length = 738
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 80/166 (48%), Gaps = 13/166 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE---ATAA 157
+L +VP T+ +D+R LFE HG VL++ L K +G FV + +E A A
Sbjct: 122 KLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRA 181
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
L+N + ++V Y +K+ LF+A+L+ +A AK++ E F
Sbjct: 182 LHNQCTIPGAMGPVQVRYTDGEKER-------HGSIEHKLFVASLNKQATAKEIEEIFAP 234
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
G V I D R+S G GFV F SK+ A A+++ G IM
Sbjct: 235 FGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIM 278
>gi|224069480|ref|XP_002326357.1| predicted protein [Populus trichocarpa]
gi|222833550|gb|EEE72027.1| predicted protein [Populus trichocarpa]
Length = 286
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 91/186 (48%), Gaps = 18/186 (9%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNN 160
+L N+P+ + LF+ G V +E+ R+RG FVTM + +E AA
Sbjct: 92 QLFVGNLPFNVNSAQLADLFKSAGNVEMVEVKYDKVTGRSRGFGFVTMSTIEEVEAASQQ 151
Query: 161 LESYEFEGRTLKVN----------YAKI-KKKNPF---PPVQ-PKPFATFN-LFIANLSF 204
YE +GR L+VN ++++ +++N F P + + F + N +++ NLS+
Sbjct: 152 FNGYELDGRPLRVNSGPPPQRETSFSRLPQRENSFSRGPGARGGETFDSSNRVYVGNLSW 211
Query: 205 EARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC 264
L F +G V+ A+V++ + RS G+GFV++ S + E A+ + G +
Sbjct: 212 NVDDSALESLFREKG-KVMDAKVVYDRDSGRSKGFGFVTYSSAEEVEDAVDSLNGAELDG 270
Query: 265 LVIALS 270
I +S
Sbjct: 271 RAIRVS 276
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAA 157
S R+ N+ W + +LF + G V+D ++ R++G FVT S +E A
Sbjct: 200 SSNRVYVGNLSWNVDDSALESLFREKGKVMDAKVVYDRDSGRSKGFGFVTYSSAEEVEDA 259
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPF 184
+++L E +GR ++V+ A+ K + F
Sbjct: 260 VDSLNGAELDGRAIRVSVAEAKPRRRF 286
>gi|322798581|gb|EFZ20185.1| hypothetical protein SINV_01390 [Solenopsis invicta]
Length = 523
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 84/189 (44%), Gaps = 13/189 (6%)
Query: 74 ATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELS 133
A D V + + + Q +E SKT L+ +P + T ++IR+LF G V +L
Sbjct: 2 ANGMDTVVQQNGGSTLG--QTSQEESKTNLIVNYLPQSMTQDEIRSLFSSIGEVESCKLI 59
Query: 134 MHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPF 192
++ G FV P++A A+N L + +T+KV+YA+ +
Sbjct: 60 RDKLSGQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSS---------EAI 110
Query: 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAET 252
NL+++ L +DL F G ++++ ++ + S G GF+ F + AE
Sbjct: 111 KGANLYVSGLPKNMAQQDLENLFSPYG-RIITSRILCDNITGLSKGVGFIRFDQRVEAER 169
Query: 253 AISAFQGKV 261
AI G +
Sbjct: 170 AIQELNGTI 178
>gi|320588360|gb|EFX00829.1| rnp domain containing protein [Grosmannia clavigera kw1407]
Length = 363
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 84/175 (48%), Gaps = 22/175 (12%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDI---ELSMHSKNRNRGLAFVTMGSPDEATAALNNLES 163
N+P+T +D++ LF Q + ++++ R+RG V SPD+A A+
Sbjct: 176 NLPFTIGWQDLKDLFRQAARTAGVARADINIGPDGRSRGSGIVVFESPDDARNAIQQFNG 235
Query: 164 YEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFN------LFIANLSFEARAKDLREFFIS 217
Y+++GR L+V NPF AT +F+ NL + +DL E F +
Sbjct: 236 YDWQGRVLEV------PPNPF-----TDHATSGNEPSEIIFVRNLPWSTSNEDLVELFGT 284
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSYL 272
G V AE+ + + RS G G V F + + A+TAIS FQG + LS++
Sbjct: 285 IG-KVEQAEIQYEPS-GRSRGSGVVRFDNPETADTAISKFQGYQYGGRPLGLSFV 337
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 42/75 (56%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLE 162
+ +N+PW++++ED+ LF G V E+ R+RG V +P+ A A++ +
Sbjct: 264 IFVRNLPWSTSNEDLVELFGTIGKVEQAEIQYEPSGRSRGSGVVRFDNPETADTAISKFQ 323
Query: 163 SYEFEGRTLKVNYAK 177
Y++ GR L +++ K
Sbjct: 324 GYQYGGRPLGLSFVK 338
>gi|356521753|ref|XP_003529516.1| PREDICTED: flowering time control protein FCA-like [Glycine max]
Length = 737
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 82/166 (49%), Gaps = 13/166 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFV---TMGSPDEATAA 157
+L +VP T+T EDIR LFE+HG V+++ L K +++G F+ T D+A A
Sbjct: 87 KLFVGSVPRTATEEDIRPLFEEHGNVIEVALIKDKKTGQHQGCCFIKYATSEEADQAIRA 146
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
L+N + ++V YA +++ + LF+ +L+ +A K++ E F
Sbjct: 147 LHNQHTLPGGVGPIQVRYADGERER-------LGAVEYKLFVGSLNKQATVKEVEEIFSK 199
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
G V + D ++S G GFV + + +A AI+A G M
Sbjct: 200 YG--RVEDVYLMRDEKKQSRGCGFVKYSHRDMALAAINALNGIYTM 243
>gi|464252|sp|P20397.3|NUCL_XENLA RecName: Full=Nucleolin; AltName: Full=Protein C23
gi|64937|emb|CAA44805.1| nucleolin [Xenopus laevis]
Length = 651
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 87/180 (48%), Gaps = 11/180 (6%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
E ++E S+T L +N+P+++T E+++ +FE DI + N+G+A+V +
Sbjct: 317 ENKKERDSRT-LFVKNIPYSTTVEELQEIFE---NAKDIRIPTGKDGSNKGIAYVEFSNE 372
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDL 211
DEA AL + E EGR++ V++ K +N P+ + L + NLS+ A L
Sbjct: 373 DEANKALEEKQGAEIEGRSIFVDFTGEKSQNSGNKKGPEGDSKV-LVVNNLSYSATEDSL 431
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271
RE F + + N R+ G+ F+ F S + A+ A+ + I I L +
Sbjct: 432 REVFEK------ATSIRIPQNQGRAKGFAFIEFSSAEDAKDAMDSCNNTEIEGRSIRLEF 485
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 82/166 (49%), Gaps = 11/166 (6%)
Query: 80 FVDSSSAAAVNTEQREEEYSKTR-LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKN 138
FVD + + N+ ++ ++ LV N+ +++T + +R +FE+ T + I ++
Sbjct: 393 FVDFTGEKSQNSGNKKGPEGDSKVLVVNNLSYSATEDSLREVFEKA-TSIRI---PQNQG 448
Query: 139 RNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLF 198
R +G AF+ S ++A A+++ + E EGR++++ +++ T LF
Sbjct: 449 RAKGFAFIEFSSAEDAKDAMDSCNNTEIEGRSIRLEFSQGGGPQGGGRGGSAQSKT--LF 506
Query: 199 IANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSF 244
+ LS + + L+E F V+A ++ + S G+GFV F
Sbjct: 507 VRGLSEDTTEETLKEAFDGS----VNARIVTDRDTGASKGFGFVDF 548
>gi|357479035|ref|XP_003609803.1| FCA [Medicago truncatula]
gi|355510858|gb|AES92000.1| FCA [Medicago truncatula]
Length = 862
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 83/166 (50%), Gaps = 13/166 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFV---TMGSPDEATAA 157
+L +VP T+T EDIR LFE+HG V+++ L K +++G F+ T D+A A
Sbjct: 158 KLFVGSVPRTATEEDIRPLFEEHGNVVEVALIKDRKTGQHQGCCFIKYATSEEADQAIRA 217
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
L+N + ++V YA +++ + LF+ +L+ +A K++ E F
Sbjct: 218 LHNRHTLPGGVGPIQVRYADGERER-------LGAVEYKLFVGSLNKQASVKEVEEVFSK 270
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
G + + D+ ++S G GFV + + +A AI+A G M
Sbjct: 271 YG--RIEDVYLMRDDQKQSRGCGFVKYSHRDMALAAINALNGIYTM 314
>gi|412986331|emb|CCO14757.1| predicted protein [Bathycoccus prasinos]
Length = 290
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 79/171 (46%), Gaps = 11/171 (6%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGT----VLDIELSMHSKNRNRGLAFVTMGSP 151
E R N+ W + D +AL E T VL E++ S R++G A + S
Sbjct: 108 EAEEGCRCYVGNLAWET---DEQALIEHCQTIGHPVLRCEVARQSGGRSKGWALIDFASK 164
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPP---VQPKPFATFNLFIANLSFEARA 208
+ A A + L E R++ V + P ++P+ + + + NL + +
Sbjct: 165 EAADAGVKALHDTECRARSIIVRAERPGGAAATKPPREIRPENSSGLQIVVRNLPWSTTS 224
Query: 209 KDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
DLR+ F G VV A+ HD+ RS G+G V F++++ A+ AI+ F G
Sbjct: 225 DDLRQVFQQVG-TVVDAKSTCHDDTGRSKGWGTVLFETQEQAQAAIAGFNG 274
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 77/180 (42%), Gaps = 27/180 (15%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEAT 155
E+ RL N+PW++T E+++ LF +IE+ +NR+RG A V+ A
Sbjct: 4 EQPQSNRLYVGNIPWSTTVEELQGLFTD---AENIEIPTGRQNRSRGYALVSFSDESAAQ 60
Query: 156 AALNNLESYEFEGRTLKVNYAKIKKKNPFP-------------PVQ-----PKPFATFNL 197
+A+ + + R + V + NP P PVQ P+
Sbjct: 61 SAMQAMNGHALGDRNISV-----RADNPLPKAPKSSSRGSGGAPVQRPTNLPEAEEGCRC 115
Query: 198 FIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAF 257
++ NL++E + L E + G V+ EV RS G+ + F SK+ A+ + A
Sbjct: 116 YVGNLAWETDEQALIEHCQTIGHPVLRCEVARQSGG-RSKGWALIDFASKEAADAGVKAL 174
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGS 150
E R E S ++V +N+PW++T +D+R +F+Q GTV+D + + H R++G V +
Sbjct: 202 EIRPENSSGLQIVVRNLPWSTTSDDLRQVFQQVGTVVDAKSTCHDDTGRSKGWGTVLFET 261
Query: 151 PDEATAALNNLESYEFEGRTLKV 173
++A AA+ E EGR +++
Sbjct: 262 QEQAQAAIAGFNGVELEGRPMQI 284
>gi|449462184|ref|XP_004148821.1| PREDICTED: flowering time control protein FCA-like [Cucumis
sativus]
gi|449511891|ref|XP_004164081.1| PREDICTED: flowering time control protein FCA-like [Cucumis
sativus]
Length = 675
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 84/166 (50%), Gaps = 13/166 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
+L +VP T+T E IR LFE+HG V+++ L + + +G FV + +EA A+ N
Sbjct: 53 KLFVGSVPRTATEEIIRPLFEEHGNVIEVALIKDKRTGQQQGCCFVKYTTSEEADRAIRN 112
Query: 161 LES-YEFEGRT--LKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
L + + G ++V YA +++ + LF+ +L+ +A K+++E F
Sbjct: 113 LHNQHTLPGGVGPIQVRYADGERER-------LGAVEYKLFVGSLNKQASEKEVKEIFSP 165
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
G VV + D ++S G GFV + + +A AI+A G M
Sbjct: 166 YG--VVEDVYLMRDEMKQSRGCGFVKYSHRDMALAAINALNGIFTM 209
>gi|15228191|ref|NP_188259.1| poly(A) binding protein 6 [Arabidopsis thaliana]
gi|2062166|gb|AAB63640.1| poly(A)-binding protein isolog [Arabidopsis thaliana]
gi|9279720|dbj|BAB01277.1| poly(A) binding protein-like [Arabidopsis thaliana]
gi|332642284|gb|AEE75805.1| poly(A) binding protein 6 [Arabidopsis thaliana]
Length = 537
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 88/188 (46%), Gaps = 15/188 (7%)
Query: 80 FVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR 139
F++ AA+ Q T + +N+ T T + + LF Q+GTV + + R
Sbjct: 186 FINKDERAAMAGNQ-----DSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGR 240
Query: 140 NRGLAFVTMGSPDEATAALNNLESYE------FEGRTLKVNYAKIKKKNPFPP-VQPKPF 192
+RG FV +P+ A A+ +L + F G+ LK + + K F KP
Sbjct: 241 SRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKPN 300
Query: 193 ATF-NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAE 251
+ NL++ NLS LRE F G +VSA+V+ H+N RS G+GFV F + + ++
Sbjct: 301 MRWSNLYVKNLSESMNETRLREIFGCYG-QIVSAKVMCHENG-RSKGFGFVCFSNCEESK 358
Query: 252 TAISAFQG 259
A G
Sbjct: 359 QAKRYLNG 366
>gi|156050581|ref|XP_001591252.1| hypothetical protein SS1G_07878 [Sclerotinia sclerotiorum 1980]
gi|154692278|gb|EDN92016.1| hypothetical protein SS1G_07878 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 376
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 76/169 (44%), Gaps = 14/169 (8%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEF 166
N+ + T ED++ FE GT+ D+ ++ ++ ++G A++ ATAA+ F
Sbjct: 152 NLLFDITEEDLKKEFEHFGTITDVRVTRDARGLSKGFAYIDFADVQSATAAIEEKNQTIF 211
Query: 167 EGRTLKVNYA----KIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDV 222
EGR L VNY KI+ +N PP + LFI NL+FE DL F E +V
Sbjct: 212 EGRRLIVNYVNQTPKIRDQN--PPSKC-------LFIGNLAFEMSDADLNSLF-REVRNV 261
Query: 223 VSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271
+ V + G+ F A A+ QGK + + + Y
Sbjct: 262 IDVRVAIDRRTGQPRGFAHADFVDVDSAMKALEQLQGKEVFNRRLRVDY 310
>gi|32482076|gb|AAP84394.1| FCA protein [Triticum aestivum]
Length = 734
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 80/166 (48%), Gaps = 13/166 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE---ATAA 157
+L +VP T+ +D+R LFE HG VL++ L K +G FV + +E A A
Sbjct: 118 KLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRA 177
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
L+N + ++V YA +K+ LF+A+L+ +A AK++ E F
Sbjct: 178 LHNQCTIPGAMGPVQVRYADGEKER-------HGSIEHKLFVASLNKQATAKEIEEIFAP 230
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
G V I D R+S G GFV F SK+ A+++ G IM
Sbjct: 231 FGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPPLAAMNSLSGTYIM 274
>gi|15021899|dbj|BAB62225.1| Hu/elav class neuron-specific RNA binding protein [Branchiostoma
belcheri]
Length = 326
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 79/164 (48%), Gaps = 11/164 (6%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T T ++I++LF G V +L ++ G FV P +A A
Sbjct: 21 SKTNLIVNYLPQTMTQDEIKSLFSSIGEVESCKLIRDKVTGQSLGYGFVNYVKPQDAEKA 80
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + +T+KV+YA+ P Q A NL+++ L +DL F +
Sbjct: 81 INTLNGLRLQAKTIKVSYAR-------PSSQAIKDA--NLYVSGLPKTMTQQDLEGLFEA 131
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKV 261
G ++++ ++F +S G GFV F + AE AI+ G +
Sbjct: 132 HGR-IITSRILFDPVTGQSRGVGFVRFDQRVEAERAITELNGHI 174
>gi|281212020|gb|EFA86181.1| hypothetical protein PPL_00743 [Polysphondylium pallidum PN500]
Length = 602
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 79/165 (47%), Gaps = 11/165 (6%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKN-RNRGLAFVTMGSPDEATAALN 159
T L+ N+P + ED+R +F G ++ ++ N +N G FV +P+ ATAA+
Sbjct: 153 TNLIINNIPKHFSSEDLRDMFANFGEIVSYKVVTKRGNSKNMGYGFVKYATPEGATAAIE 212
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEG 219
+ + + + LKV+YA NL++ L + +DL E F S+
Sbjct: 213 QMNGHSIDLKFLKVSYATATSSQS---------THANLYVNRLEPQVTKEDLAEAF-SKF 262
Query: 220 WDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC 264
+VV +++ N S GFV F +++ A TA+SA G I C
Sbjct: 263 GEVVETKILVDPNTGSSRCVGFVHFSARRNALTALSAMNGANIPC 307
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 189 PKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKK 248
P A NL I N+ ++DLR+ F + G ++VS +V+ ++ GYGFV + + +
Sbjct: 147 PDLDALTNLIINNIPKHFSSEDLRDMFANFG-EIVSYKVVTKRGNSKNMGYGFVKYATPE 205
Query: 249 VAETAISAFQGKVIMCLVIALSY 271
A AI G I + +SY
Sbjct: 206 GATAAIEQMNGHSIDLKFLKVSY 228
>gi|356565014|ref|XP_003550740.1| PREDICTED: flowering time control protein FCA-like [Glycine max]
Length = 733
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 87/183 (47%), Gaps = 13/183 (7%)
Query: 85 SAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGL 143
S + R + S +L +VP T++ EDIR LFE+HG V+++ L K +++G
Sbjct: 70 SGRGGGSPDRLDGGSFAKLFVGSVPRTASEEDIRPLFEEHGNVIEVALIKDKKTGQHQGC 129
Query: 144 AFV---TMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIA 200
F+ T D+A AL+N + ++V YA +++ + LF+
Sbjct: 130 CFIKYATSEEADQAIRALHNQHTLPGGVGPIQVRYADGERER-------LGAVEYKLFVG 182
Query: 201 NLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
+L+ +A K++ E F G V + D ++S G GFV + + +A AI+A G
Sbjct: 183 SLNKQATVKEVEEIFSKYGR--VEDVYLMRDEKKQSRGCGFVKYSHRDMALAAINALNGI 240
Query: 261 VIM 263
M
Sbjct: 241 YTM 243
>gi|345493621|ref|XP_003427111.1| PREDICTED: ELAV-like protein 3-like isoform 3 [Nasonia vitripennis]
gi|345493623|ref|XP_001603257.2| PREDICTED: ELAV-like protein 3-like isoform 1 [Nasonia vitripennis]
Length = 349
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 85/203 (41%), Gaps = 28/203 (13%)
Query: 74 ATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELS 133
A D V + + N Q +E SKT L+ +P T T E+IR+LF G V +L
Sbjct: 3 ANGMDTVVQQNGGS--NLGQSSQEESKTNLIVNYLPQTMTQEEIRSLFSSIGEVESCKLI 60
Query: 134 MHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPF 192
++ G FV P++A A+N L + +T+KV+YA+ P +
Sbjct: 61 RDKLTGQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR-------PSSEAIKG 113
Query: 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDN--------------PRRSAG 238
A NL+++ L +DL F G + S I DN P S G
Sbjct: 114 A--NLYVSGLPKNMTQQDLENLFSPYGRIITSR--ILCDNITVRQFVTGGGDNLPGLSKG 169
Query: 239 YGFVSFKSKKVAETAISAFQGKV 261
GF+ F + AE AI G +
Sbjct: 170 VGFIRFDQRVEAERAIQELNGTI 192
>gi|32482057|gb|AAP84375.1| mutant FCA-D1 [Triticum aestivum]
Length = 284
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 84/167 (50%), Gaps = 13/167 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE---ATA 156
+L +VP T+ +D+R LFE HG VL++ L K +G FV + +E A
Sbjct: 125 VKLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIR 184
Query: 157 ALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFI 216
AL+N + ++V YA +K+ ++ K LF+A+L+ +A AK++ E F
Sbjct: 185 ALHNQCTIPGAMGPVQVRYADGEKER-HGSIEHK------LFVASLNKQATAKEIEEVFA 237
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
G V I D R+S G GFV F SK+ A A+++ G IM
Sbjct: 238 PFGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIM 282
>gi|145354241|ref|XP_001421399.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581636|gb|ABO99692.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 288
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 78/182 (42%), Gaps = 15/182 (8%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAAL 158
S RL N+PW++T ED+R LF + G V +++ + R+RG V S EA AA+
Sbjct: 7 SSARLYVGNIPWSTTIEDLRELFAECGGVTRVDIPTGRQGRSRGYGLVEFNSEAEAQAAV 66
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNPFPPVQ---------PKPFATFNLFIANLSFEARAK 209
++ RT+ V K K + P + NL++E +
Sbjct: 67 TRMDGTPLGDRTITVREDKAPTKAAGGAKKASASVLGDAPAGGDGCRCYFGNLAWETSEE 126
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAI-----SAFQGKVIMC 264
L S G +VV EV RS G+ V F + + A+ AI S QG+ I+
Sbjct: 127 TLTSHCASFGVNVVQCEVARQSGG-RSKGWALVDFATPEEAQNAIEQMHNSEIQGRSIIV 185
Query: 265 LV 266
V
Sbjct: 186 RV 187
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 83/156 (53%), Gaps = 4/156 (2%)
Query: 107 NVPWTSTHEDIRALFEQHG-TVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYE 165
N+ W ++ E + + G V+ E++ S R++G A V +P+EA A+ + + E
Sbjct: 118 NLAWETSEETLTSHCASFGVNVVQCEVARQSGGRSKGWALVDFATPEEAQNAIEQMHNSE 177
Query: 166 FEGRTL--KVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVV 223
+GR++ +V +K+ +P+ + + + NL + ++DLR+ F + +VV
Sbjct: 178 IQGRSIIVRVERPGAGQKSARVETRPENSSGLQIVVRNLPWTTTSEDLRQVF-QQVGNVV 236
Query: 224 SAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+A + H + RS G+G V F++++ A+ AI F G
Sbjct: 237 NAVAVCHTDTGRSKGWGTVLFETREQAQAAIQGFNG 272
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGS 150
E R E S ++V +N+PWT+T ED+R +F+Q G V++ H+ R++G V +
Sbjct: 200 ETRPENSSGLQIVVRNLPWTTTSEDLRQVFQQVGNVVNAVAVCHTDTGRSKGWGTVLFET 259
Query: 151 PDEATAALNNLESYEFEGRTLKVNYAK 177
++A AA+ E E R +++ +
Sbjct: 260 REQAQAAIQGFNGVELEHRPMQIKLDR 286
>gi|225679309|gb|EEH17593.1| nucleic acid-binding protein [Paracoccidioides brasiliensis Pb03]
Length = 960
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 82/181 (45%), Gaps = 7/181 (3%)
Query: 80 FVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR 139
F D++S N E + E + N+ + T +D++ + G +L + + S+
Sbjct: 753 FRDNTSILRSNPEVKPNET----IYIGNLFFEVTADDLKRDLSKFGNILAVRIVYDSRGM 808
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI 199
+RG A+V S D A AA+N + +EGR + VNY+ NP P +P T LFI
Sbjct: 809 SRGFAYVQFDSIDAAEAAINEMNMTIYEGRRVVVNYSSRGSANPTPTRSNEP--TRTLFI 866
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
NLSFE ++L E F + +V V + G+ F + A+ A +
Sbjct: 867 GNLSFEMSDRELNELF-KDIKNVTDVRVSVDRRTGQPRGFAHADFLDVESAQAAFEILKD 925
Query: 260 K 260
K
Sbjct: 926 K 926
>gi|156373168|ref|XP_001629405.1| predicted protein [Nematostella vectensis]
gi|156216405|gb|EDO37342.1| predicted protein [Nematostella vectensis]
Length = 817
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 85/178 (47%), Gaps = 4/178 (2%)
Query: 78 DPFVDSSSAAAVNTEQREEEYSKTRLV-AQNVPWTSTHEDIRALFEQHGTVLDIELSMHS 136
D S AA + EEE S R V N+ ++ T + +R F + G VLD+ + +
Sbjct: 577 DKVRSSEPAAKKPCGESEEESSDPRKVFISNLLFSITEDHLRDKFSKLGEVLDVRIVKNM 636
Query: 137 KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFN 196
R++G A+V + AAL ++ + EGR + ++ K KNP P
Sbjct: 637 AGRSKGYAYVEFNNESTVQAAL-AMDREKMEGRPMFISPCVDKAKNPTTFKFPTSLDKHT 695
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAI 254
LF++NL F+A+ ++ E F G VV + + + GYG+V ++ + A TA+
Sbjct: 696 LFVSNLPFDAKESEIEELFSKHG--VVKQVRLVTNRAGKPKGYGYVEYEQESSASTAV 751
Score = 40.8 bits (94), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALN 159
K L N+P+ + +I LF +HG V + L + + +G +V A+ A+
Sbjct: 693 KHTLFVSNLPFDAKESEIEELFSKHGVVKQVRLVTNRAGKPKGYGYVEYEQESSASTAVL 752
Query: 160 NLESYEFEGRTLKV 173
L+ E +GRT+ V
Sbjct: 753 TLDKTEVKGRTISV 766
>gi|332029758|gb|EGI69627.1| ELAV-like protein 2 [Acromyrmex echinatior]
Length = 359
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 84/189 (44%), Gaps = 13/189 (6%)
Query: 74 ATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELS 133
A D V + + + Q +E SKT L+ +P + T ++IR+LF G V +L
Sbjct: 3 ANGMDTVVQQNGGSTLG--QTSQEESKTNLIVNYLPQSMTQDEIRSLFSSIGEVESCKLI 60
Query: 134 MHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPF 192
++ G FV P++A A+N L + +T+KV+YA+ +
Sbjct: 61 RDKLSGQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSS---------EAI 111
Query: 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAET 252
NL+++ L +DL F G ++++ ++ + S G GF+ F + AE
Sbjct: 112 KGANLYVSGLPKNMAQQDLENLFSPYG-RIITSRILCDNITGLSKGVGFIRFDQRVEAER 170
Query: 253 AISAFQGKV 261
AI G +
Sbjct: 171 AIQELNGTI 179
>gi|157118269|ref|XP_001653144.1| heterogeneous nuclear ribonucleoprotein 27c [Aedes aegypti]
gi|94468876|gb|ABF18287.1| RNA-binding protein musashi/mRNA cleavage and polyadenylation
factor I complex subunit HRP1 [Aedes aegypti]
gi|108875770|gb|EAT39995.1| AAEL008257-PA [Aedes aegypti]
Length = 398
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 81/162 (50%), Gaps = 9/162 (5%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSPDEA 154
+++ K +L + W +T E+++ F ++G V+D + + + R+RG FVT PD
Sbjct: 13 DDHEKGKLFVGGLSWETTQENLQRYFGRYGEVIDCVVMKNNETGRSRGFGFVTFADPDNV 72
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF-NLFIANLSFEARAKDLRE 213
AL N + +GRT+ K NP +PK + +F+ L DLR
Sbjct: 73 DRALEN-GPHTLDGRTIDP-----KPCNPRSLHKPKRTGGYPKVFLGGLPPNITETDLRS 126
Query: 214 FFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
FF G +V+ +++ ++S G+GF+SF+++ E A +
Sbjct: 127 FFSRYG-NVMEVVIMYDQEKKKSRGFGFLSFENEPAVERATA 167
>gi|268531322|ref|XP_002630787.1| Hypothetical protein CBG02484 [Caenorhabditis briggsae]
Length = 403
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 79/164 (48%), Gaps = 13/164 (7%)
Query: 112 STHED-IRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRT 170
S ED I LF Q G+V ++ +H N AFV +A+ AL + R
Sbjct: 52 SVSEDFIATLFNQIGSVTKTKV-IHD-GANDPYAFVEFSDHGQASQALQTMNKRLLHDRE 109
Query: 171 LKVNYAKIKKKNPFPPVQPKPFAT---FNLFIANLSFEARAKDLREFFISEGWDVVSAEV 227
+KVN+A P QP T F++F+ +LS E + LRE FI G DV A+V
Sbjct: 110 MKVNWA------VEPGQQPSKIDTTRHFHVFVGDLSSEVDNQKLREAFIPFG-DVSDAKV 162
Query: 228 IFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271
I N +S GYGFVS+ ++ AE AI G+ + I ++
Sbjct: 163 IRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNW 206
>gi|323335711|gb|EGA76992.1| Pub1p [Saccharomyces cerevisiae Vin13]
Length = 453
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 87/202 (43%), Gaps = 27/202 (13%)
Query: 78 DPFVDSSSAAAVNTEQREE-------------------EYSKTRLVAQNVPWTSTHEDIR 118
DP + S A N+EQ E+ E S L N+ T + ++
Sbjct: 33 DPSSEQSXAVEGNSEQAEDNQGENDPSVVPANAITGGRETSDRVLYVGNLDKAITEDILK 92
Query: 119 ALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178
F+ G + +I++ + N+N AFV +A AL L + E +K+N+A
Sbjct: 93 QYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWA-- 150
Query: 179 KKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAG 238
F Q TFNLF+ +L+ + LR F + +S V++ S G
Sbjct: 151 -----FQSQQSSSDDTFNLFVGDLNVNVDDETLRNAF-KDFPSYLSGHVMWDMQTGSSRG 204
Query: 239 YGFVSFKSKKVAETAISAFQGK 260
YGFVSF S+ A+ A+ + QG+
Sbjct: 205 YGFVSFTSQDDAQNAMDSMQGQ 226
>gi|397642327|gb|EJK75167.1| hypothetical protein THAOC_03118, partial [Thalassiosira oceanica]
Length = 452
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 85/174 (48%), Gaps = 19/174 (10%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAALNN 160
+L N+ +++ +R++F G V D+ L M +R RG FVT+ + A A+
Sbjct: 20 KLYIGNLDYSTDEPQLRSVFGAFGAVTDVFLPMERGTSRPRGFGFVTLSTRQAAEDAIAK 79
Query: 161 LESYEFEGRTLKVNYAKIKKKNPF------PPVQPKPFATFN--------LFIANLSFEA 206
++ + +GRT++VN ++ + + P P P + FN L++ NLSF+
Sbjct: 80 MDQSQLDGRTIRVNESRPRGEGPGARRSNEPGTGPGGYGAFNPQGREDVKLYVGNLSFDT 139
Query: 207 RAKDLREFFISEGWDVVSAEVIFHD-NPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ +R F E + VS + D + R G+ FV+ +K+ AETA + G
Sbjct: 140 NEEAVRSMF--EQYGTVSDCFLPSDRDTGRPRGFAFVTMPAKE-AETACNKVNG 190
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 60/123 (48%), Gaps = 6/123 (4%)
Query: 76 TQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIEL-SM 134
+ +P A N + RE+ +L N+ + + E +R++FEQ+GTV D L S
Sbjct: 107 SNEPGTGPGGYGAFNPQGRED----VKLYVGNLSFDTNEEAVRSMFEQYGTVSDCFLPSD 162
Query: 135 HSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFAT 194
R RG AFVTM EA A N + E +GRT++VN A+ K + P
Sbjct: 163 RDTGRPRGFAFVTM-PAKEAETACNKVNGMELDGRTVRVNEAQPKVSSSGGGGNPPTPLI 221
Query: 195 FNL 197
FNL
Sbjct: 222 FNL 224
>gi|428170953|gb|EKX39874.1| hypothetical protein GUITHDRAFT_154318 [Guillardia theta CCMP2712]
Length = 270
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 83/180 (46%), Gaps = 10/180 (5%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAAL 158
K R+ +P+ +T +DI+ +FE G + +IEL M++ +R G F+T D A+
Sbjct: 23 DKRRVFLGGLPFKATEKDIKKMFESCGAIENIELPMNADSRPAGFGFLTFKDADSVAKAV 82
Query: 159 NNLESYEFEGRTLKVNYAKIKK----KNPFPPV---QPKPFATFNLFIANLSFEARAKDL 211
++ E GR +KV A + K PF P +PKP +F+ NLS++ +
Sbjct: 83 -AMDGQELMGRWVKVKEADGTEGSAGKKPFTPNREPKPKPDGCTTIFMGNLSWDVDEDTI 141
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271
R FF G +VV+ G+G V F + A+ A G+ + I + +
Sbjct: 142 RSFFADCG-EVVNVRFATDRETGDFKGFGHVQFAESSATDLAV-AKGGEFVAGRAIRVDF 199
>gi|393239414|gb|EJD46946.1| RNA-binding domain-containing protein [Auricularia delicata
TFB-10046 SS5]
Length = 769
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 62/100 (62%), Gaps = 2/100 (2%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR-NRGLAFVTMGS 150
++ E++ RL +N+ ++ T D+++ F HGT++ + + + + N+ ++GLAFVT +
Sbjct: 237 DEEEQDTPSARLFVRNLAFSCTESDLKSHFSAHGTLVQVHIPLDTANKTSKGLAFVTYST 296
Query: 151 PDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPK 190
PDEA+AA L+ F+GR L + A I+++ P P PK
Sbjct: 297 PDEASAAREALDGTSFQGRLLHILPA-IERRKPAAPADPK 335
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNL 161
+++ +NVP+ +T +D+RALF HG + + L +R+RG AF+ S EA A L
Sbjct: 648 KMIVKNVPFEATRKDLRALFGAHGHLKSVRLPKKFNSRSRGFAFLEFVSHQEAEHAFATL 707
Query: 162 ESYEFEGRTLKVNYA 176
F GR L + +A
Sbjct: 708 RHTHFLGRHLVLEWA 722
Score = 45.4 bits (106), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 7/121 (5%)
Query: 142 GLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA---TFNLF 198
G FV + D+A AL L+ Y +G L+V +A +++ + + +
Sbjct: 591 GYGFVGFATADDAKRALEGLQGYILDGHELRVKFAGRGREDEAQDSRDGAIGGKKSAKMI 650
Query: 199 IANLSFEARAKDLREFFISEG-WDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAF 257
+ N+ FEA KDLR F + G V F+ RS G+ F+ F S + AE A +
Sbjct: 651 VKNVPFEATRKDLRALFGAHGHLKSVRLPKKFNS---RSRGFAFLEFVSHQEAEHAFATL 707
Query: 258 Q 258
+
Sbjct: 708 R 708
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 85/193 (44%), Gaps = 32/193 (16%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHG-----------TVLDIELSMHSKNRN--RGL 143
+ S T ++ +N+P+ +T + LF HG T+ +E + + R+ +G+
Sbjct: 428 QRSSTIILVKNIPYGTTSAQLTELFAPHGALVRLLIPPAGTIAVVEFAHADEARSAFKGV 487
Query: 144 AFVTMGSPDEATAALNNLESYEF-----EGRTLKVNYAKIKKKNPFPPVQP----KPFAT 194
A+ +GS A L F +G+ K ++++K P V P + A
Sbjct: 488 AYKRLGS---AVVYLEWAPQGMFRPDAPKGKEDKGGVVRVEEKE-VPVVAPAEEGEVKAG 543
Query: 195 FNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRR-----SAGYGFVSFKSKKV 249
LF+ NL+F + LR ++ V A V +P+R S GYGFV F +
Sbjct: 544 TTLFVKNLAFSTNSDALR-AVVARMQGFVFARVQMKPDPKRLGEMLSMGYGFVGFATADD 602
Query: 250 AETAISAFQGKVI 262
A+ A+ QG ++
Sbjct: 603 AKRALEGLQGYIL 615
>gi|365758602|gb|EHN00436.1| Pub1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 455
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 92/214 (42%), Gaps = 28/214 (13%)
Query: 66 SPFVFHFSATTQDPFVDSSSAAAVNTEQREE-------------------EYSKTRLVAQ 106
+P V SA DP + + + VN+ Q E+ E S L
Sbjct: 22 APSVAEASAPV-DPSAEQNVSGEVNSTQVEDDQGESDPSVVPANAITGGRETSDRVLYVG 80
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEF 166
N+ T + ++ F+ G + +I++ + N+N AFV +A AL L +
Sbjct: 81 NLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQI 140
Query: 167 EGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAE 226
E +K+N+A F Q TFNLF+ +L+ + LR F + +S
Sbjct: 141 ENNIVKINWA-------FQSQQSSSDDTFNLFVGDLNVNVDDETLRNAF-KDFPSYLSGH 192
Query: 227 VIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
V++ S GYGFVSF S+ A+TA+ QG+
Sbjct: 193 VMWDMQTGSSRGYGFVSFTSQDDAQTAMDTMQGQ 226
>gi|323303187|gb|EGA56986.1| Pub1p [Saccharomyces cerevisiae FostersB]
Length = 433
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 87/202 (43%), Gaps = 27/202 (13%)
Query: 78 DPFVDSSSAAAVNTEQREE-------------------EYSKTRLVAQNVPWTSTHEDIR 118
DP + S A N+EQ E+ E S L N+ T + ++
Sbjct: 34 DPSSEQSVAVEGNSEQAEDNQGENDPSVVPANAITGGRETSDRVLYVGNLDKAITEDILK 93
Query: 119 ALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178
F+ G + +I++ + N+N AFV +A AL L + E +K+N+A
Sbjct: 94 QYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWA-- 151
Query: 179 KKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAG 238
F Q TFNLF+ +L+ + LR F + +S V++ S G
Sbjct: 152 -----FQSQQSSSDDTFNLFVGDLNVNVDDETLRNAF-KDFPSYLSGHVMWDMQTGSSRG 205
Query: 239 YGFVSFKSKKVAETAISAFQGK 260
YGFVSF S+ A+ A+ + QG+
Sbjct: 206 YGFVSFTSQDDAQNAMDSMQGQ 227
>gi|328779568|ref|XP_393451.4| PREDICTED: heterogeneous nuclear ribonucleoprotein 27C-like [Apis
mellifera]
Length = 442
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 82/169 (48%), Gaps = 11/169 (6%)
Query: 89 VNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVT 147
V TE ++E K +L + W +T E+++ F ++G V+D + +S+ R+RG FVT
Sbjct: 3 VKTEMDDDE--KGKLFVGGLSWETTQENLQRYFGRYGEVIDCVVMKNSESGRSRGFGFVT 60
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF-NLFIANLSFEA 206
P L N ++ +GRT+ K NP +PK F +F+ L
Sbjct: 61 FSDPANVPLVLQN-GPHQLDGRTIDP-----KPCNPRTQQKPKRSGGFPKVFLGGLPSNV 114
Query: 207 RAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
DLR FF G V+ +++ ++S G+GF+SF+ + + ++
Sbjct: 115 TETDLRSFFTRFG-KVMEVVIMYDQEKKKSRGFGFLSFEDEDAVDRCVA 162
>gi|349580919|dbj|GAA26078.1| K7_Pub1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 453
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 87/202 (43%), Gaps = 27/202 (13%)
Query: 78 DPFVDSSSAAAVNTEQREE-------------------EYSKTRLVAQNVPWTSTHEDIR 118
DP + S A N+EQ E+ E S L N+ T + ++
Sbjct: 33 DPSSEQSVAVEGNSEQAEDNQGENDPSVVPANAITGGRETSDRVLYVGNLDKAITEDILK 92
Query: 119 ALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178
F+ G + +I++ + N+N AFV +A AL L + E +K+N+A
Sbjct: 93 QYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWA-- 150
Query: 179 KKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAG 238
F Q TFNLF+ +L+ + LR F + +S V++ S G
Sbjct: 151 -----FQSQQSSSDDTFNLFVGDLNVNVDDETLRNAF-KDFPSYLSGHVMWDMQTGSSRG 204
Query: 239 YGFVSFKSKKVAETAISAFQGK 260
YGFVSF S+ A+ A+ + QG+
Sbjct: 205 YGFVSFTSQDDAQNAMDSMQGQ 226
>gi|172438|gb|AAA02808.1| RNA-binding protein [Saccharomyces cerevisiae]
Length = 429
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 87/202 (43%), Gaps = 27/202 (13%)
Query: 78 DPFVDSSSAAAVNTEQREE-------------------EYSKTRLVAQNVPWTSTHEDIR 118
DP + S A N+EQ E+ E S L N+ T + ++
Sbjct: 33 DPSSEQSVAVEGNSEQAEDNQGENDPSVVPANAITGGRETSDRVLYVGNLDKAITEDILK 92
Query: 119 ALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178
F+ G + +I++ + N+N AFV +A AL L + E +K+N+A
Sbjct: 93 QYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWA-- 150
Query: 179 KKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAG 238
F Q TFNLF+ +L+ + LR F + +S V++ S G
Sbjct: 151 -----FQSQQSSSDDTFNLFVGDLNVNVDDETLRNAF-KDFPSYLSGHVMWDMQTGSSRG 204
Query: 239 YGFVSFKSKKVAETAISAFQGK 260
YGFVSF S+ A+ A+ + QG+
Sbjct: 205 YGFVSFTSQDDAQNAMDSMQGQ 226
>gi|226532724|ref|NP_001151236.1| RNA binding protein [Zea mays]
gi|195645238|gb|ACG42087.1| RNA binding protein [Zea mays]
Length = 257
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 85/173 (49%), Gaps = 14/173 (8%)
Query: 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRN-RGLAFVTMGSPDEATA 156
Y ++VA +P+T+T DIR LFE +G + ++LS + N RGLAF+ S ++A
Sbjct: 75 YEPGKVVASGLPYTTTEADIRKLFEFYGPIQSMQLSRFPDSGNFRGLAFLCFESEEDAIK 134
Query: 157 ALNNLESYEFEGRTLKVNYAKI------KKKNPFPPVQPKPFATFNLFIANLSFEARAKD 210
+L L+ ++ R ++V ++ K+K F K + ++ NLS+ D
Sbjct: 135 SL-ELDGFKIGSRYMRVERCRVTATSNKKRKAEFETDPKKSEGCLSAYVGNLSWNVDEND 193
Query: 211 LREFFISEGWDVVSAEVIFHDNPRRSAGYGF--VSFKSKKVAETAISAFQGKV 261
LR FF G + A V F + R GF V F+ + E AI+ Q K+
Sbjct: 194 LRGFF---GPSKI-ASVRFAVDKRTGGSRGFCHVEFQDDESLEKAIAMNQSKL 242
>gi|194697124|gb|ACF82646.1| unknown [Zea mays]
gi|414864467|tpg|DAA43024.1| TPA: RNA binding protein [Zea mays]
Length = 257
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 85/173 (49%), Gaps = 14/173 (8%)
Query: 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRN-RGLAFVTMGSPDEATA 156
Y ++VA +P+T+T DIR LFE +G + ++LS + N RGLAF+ S ++A
Sbjct: 75 YEPGKVVASGLPYTTTEADIRKLFEFYGPIQSMQLSRFPDSGNFRGLAFLCFESEEDAIK 134
Query: 157 ALNNLESYEFEGRTLKVNYAKI------KKKNPFPPVQPKPFATFNLFIANLSFEARAKD 210
+L L+ ++ R ++V ++ K+K F K + ++ NLS+ D
Sbjct: 135 SL-ELDGFKIGSRYMRVERCRVTATSNKKRKAEFETDPKKSEGCLSAYVGNLSWNVDEND 193
Query: 211 LREFFISEGWDVVSAEVIFHDNPRRSAGYGF--VSFKSKKVAETAISAFQGKV 261
LR FF G + A V F + R GF V F+ + E AI+ Q K+
Sbjct: 194 LRGFF---GPSKI-ASVRFAVDKRTGGSRGFCHVEFQDDESLEKAIAMNQSKL 242
>gi|6324312|ref|NP_014382.1| Pub1p [Saccharomyces cerevisiae S288c]
gi|308153665|sp|P32588.4|PUB1_YEAST RecName: Full=Nuclear and cytoplasmic polyadenylated RNA-binding
protein PUB1; AltName: Full=ARS consensus-binding
protein ACBP-60; AltName: Full=Poly uridylate-binding
protein; Short=Poly(U)-binding protein
gi|1301841|emb|CAA95877.1| PUB1 [Saccharomyces cerevisiae]
gi|285814634|tpg|DAA10528.1| TPA: Pub1p [Saccharomyces cerevisiae S288c]
gi|392296972|gb|EIW08073.1| Pub1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 453
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 87/202 (43%), Gaps = 27/202 (13%)
Query: 78 DPFVDSSSAAAVNTEQREE-------------------EYSKTRLVAQNVPWTSTHEDIR 118
DP + S A N+EQ E+ E S L N+ T + ++
Sbjct: 33 DPSSEQSVAVEGNSEQAEDNQGENDPSVVPANAITGGRETSDRVLYVGNLDKAITEDILK 92
Query: 119 ALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178
F+ G + +I++ + N+N AFV +A AL L + E +K+N+A
Sbjct: 93 QYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWA-- 150
Query: 179 KKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAG 238
F Q TFNLF+ +L+ + LR F + +S V++ S G
Sbjct: 151 -----FQSQQSSSDDTFNLFVGDLNVNVDDETLRNAF-KDFPSYLSGHVMWDMQTGSSRG 204
Query: 239 YGFVSFKSKKVAETAISAFQGK 260
YGFVSF S+ A+ A+ + QG+
Sbjct: 205 YGFVSFTSQDDAQNAMDSMQGQ 226
>gi|295646|gb|AAC37348.1| RNA-binding protein [Saccharomyces cerevisiae]
gi|311124|gb|AAC37364.1| poly(A)-binding protein [Saccharomyces cerevisiae]
gi|151944515|gb|EDN62793.1| poly(A) binding protein [Saccharomyces cerevisiae YJM789]
gi|190409011|gb|EDV12276.1| poly(A) binding protein [Saccharomyces cerevisiae RM11-1a]
gi|207341619|gb|EDZ69624.1| YNL016Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256274171|gb|EEU09080.1| Pub1p [Saccharomyces cerevisiae JAY291]
gi|259148933|emb|CAY82177.1| Pub1p [Saccharomyces cerevisiae EC1118]
gi|323346726|gb|EGA81007.1| Pub1p [Saccharomyces cerevisiae Lalvin QA23]
gi|323352444|gb|EGA84945.1| Pub1p [Saccharomyces cerevisiae VL3]
Length = 453
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 87/202 (43%), Gaps = 27/202 (13%)
Query: 78 DPFVDSSSAAAVNTEQREE-------------------EYSKTRLVAQNVPWTSTHEDIR 118
DP + S A N+EQ E+ E S L N+ T + ++
Sbjct: 33 DPSSEQSVAVEGNSEQAEDNQGENDPSVVPANAITGGRETSDRVLYVGNLDKAITEDILK 92
Query: 119 ALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178
F+ G + +I++ + N+N AFV +A AL L + E +K+N+A
Sbjct: 93 QYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWA-- 150
Query: 179 KKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAG 238
F Q TFNLF+ +L+ + LR F + +S V++ S G
Sbjct: 151 -----FQSQQSSSDDTFNLFVGDLNVNVDDETLRNAF-KDFPSYLSGHVMWDMQTGSSRG 204
Query: 239 YGFVSFKSKKVAETAISAFQGK 260
YGFVSF S+ A+ A+ + QG+
Sbjct: 205 YGFVSFTSQDDAQNAMDSMQGQ 226
>gi|350406107|ref|XP_003487656.1| PREDICTED: heterogeneous nuclear ribonucleoprotein 27C-like [Bombus
impatiens]
Length = 426
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 82/169 (48%), Gaps = 11/169 (6%)
Query: 89 VNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVT 147
V TE ++E K +L + W +T E+++ F ++G V+D + +S+ R+RG FVT
Sbjct: 3 VKTEMDDDE--KGKLFVGGLSWETTQENLQRYFGRYGEVIDCVVMKNSESGRSRGFGFVT 60
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF-NLFIANLSFEA 206
P L N ++ +GRT+ K NP +PK F +F+ L
Sbjct: 61 FSDPANVPLVLQN-GPHQLDGRTIDP-----KPCNPRTQQKPKRSGGFPKVFLGGLPSNV 114
Query: 207 RAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
DLR FF G V+ +++ ++S G+GF+SF+ + + ++
Sbjct: 115 TETDLRSFFTRFG-KVMEVVIMYDQEKKKSRGFGFLSFEDEDAVDRCVA 162
>gi|389741761|gb|EIM82949.1| RNA-binding domain-containing protein [Stereum hirsutum FP-91666
SS1]
Length = 145
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYE 165
N+ W +T + +R F + G +LD I + R+RG FVT G+P+EA AA+NNL E
Sbjct: 9 NLSWNTTDDTLRQAFSEFGAILDSIVMRDRETGRSRGFGFVTFGTPEEADAAINNLNEQE 68
Query: 166 FEGRTLKVNYAKIK 179
+GR ++VN A K
Sbjct: 69 LDGRRIRVNLANAK 82
>gi|365763380|gb|EHN04909.1| Pub1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 453
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 87/202 (43%), Gaps = 27/202 (13%)
Query: 78 DPFVDSSSAAAVNTEQREE-------------------EYSKTRLVAQNVPWTSTHEDIR 118
DP + S A N+EQ E+ E S L N+ T + ++
Sbjct: 33 DPSSEQSVAVEGNSEQAEDNQGENDPSVVPANAITGGRETSDRVLYVGNLDKAITEDILK 92
Query: 119 ALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178
F+ G + +I++ + N+N AFV +A AL L + E +K+N+A
Sbjct: 93 QYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWA-- 150
Query: 179 KKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAG 238
F Q TFNLF+ +L+ + LR F + +S V++ S G
Sbjct: 151 -----FQSQQSSSDDTFNLFVGDLNVNVDDETLRNAF-KDFPSYLSGHVMWDMQTGSSRG 204
Query: 239 YGFVSFKSKKVAETAISAFQGK 260
YGFVSF S+ A+ A+ + QG+
Sbjct: 205 YGFVSFTSQDDAQNAMDSMQGQ 226
>gi|340723465|ref|XP_003400110.1| PREDICTED: heterogeneous nuclear ribonucleoprotein 27C-like [Bombus
terrestris]
Length = 443
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 82/169 (48%), Gaps = 11/169 (6%)
Query: 89 VNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVT 147
V TE ++E K +L + W +T E+++ F ++G V+D + +S+ R+RG FVT
Sbjct: 3 VKTEMDDDE--KGKLFVGGLSWETTQENLQRYFGRYGEVIDCVVMKNSESGRSRGFGFVT 60
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF-NLFIANLSFEA 206
P L N ++ +GRT+ K NP +PK F +F+ L
Sbjct: 61 FSDPANVPLVLQN-GPHQLDGRTIDP-----KPCNPRTQQKPKRSGGFPKVFLGGLPSNV 114
Query: 207 RAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
DLR FF G V+ +++ ++S G+GF+SF+ + + ++
Sbjct: 115 TETDLRSFFTRFG-KVMEVVIMYDQEKKKSRGFGFLSFEDEDAVDRCVA 162
>gi|297800520|ref|XP_002868144.1| hypothetical protein ARALYDRAFT_493257 [Arabidopsis lyrata subsp.
lyrata]
gi|297313980|gb|EFH44403.1| hypothetical protein ARALYDRAFT_493257 [Arabidopsis lyrata subsp.
lyrata]
Length = 547
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 81/174 (46%), Gaps = 17/174 (9%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFV---TMGSP 151
+ S +L +VP T+ E++R FE+HG VL++ L + + +G FV T
Sbjct: 122 DHSSTVKLFVGSVPRTAIEEEVRPFFEKHGNVLEVALIKDKRTGQQQGCCFVKYATSKDA 181
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFAT--FNLFIANLSFEARAK 209
D A AL+N + ++V YA +++ T F LF+ +L+ +A K
Sbjct: 182 DRAIRALHNQITLPGGTGPVQVRYADGERER---------IGTLEFKLFVGSLNKQATEK 232
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
++ E F+ G V + D R+S G GFV + SK+ A AI G M
Sbjct: 233 EVEEIFLQFGR--VEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNGTYTM 284
>gi|363750866|ref|XP_003645650.1| hypothetical protein Ecym_3344 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889284|gb|AET38833.1| Hypothetical protein Ecym_3344 [Eremothecium cymbalariae
DBVPG#7215]
Length = 421
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 87/198 (43%), Gaps = 24/198 (12%)
Query: 82 DSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNR 141
D S V + E S L N+ + ++ F+ G + ++++ + N
Sbjct: 44 DQSQVTPVLATKGGRETSDRILYVGNLDKAINEDTLKQYFQVGGPIANVKVLVDKNNEEA 103
Query: 142 GLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIAN 201
AFV P +A A L+ + EG +K+N+A F TFNLF+ +
Sbjct: 104 NYAFVEYHQPHDANVAFQTLDGKQIEGNVIKINWA-------FQSQHVSSDDTFNLFVGD 156
Query: 202 LSFEARAKDL----REF--FISEG--WDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETA 253
L+ + + L +EF FI WD++S RS GYGFVSF + VA+ A
Sbjct: 157 LNVDVDDETLTGTFKEFPSFIQAHVMWDMLSG---------RSRGYGFVSFSEQDVAQQA 207
Query: 254 ISAFQGKVIMCLVIALSY 271
+ + QG ++ I +++
Sbjct: 208 MESKQGFILNGRAIRINW 225
>gi|383862669|ref|XP_003706806.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Megachile rotundata]
Length = 612
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 96/196 (48%), Gaps = 20/196 (10%)
Query: 92 EQREEEYSK-----TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFV 146
++RE+E + T + +N T + ++ +FE++GT+ ++ + ++RG FV
Sbjct: 178 KEREKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFV 237
Query: 147 TMGSPDEATAALNNLESYEF-EGRTLKVNYAKIKK------KNPFPPVQPKPFATF---N 196
PD A A+ L E EG+ + V A+ K K F ++ + + + N
Sbjct: 238 AFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLSRYQGVN 297
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
L++ NL + LR F G + SA+V+ D RS G+GFV F + + A A++
Sbjct: 298 LYVKNLDDSINDERLRREFAPFGT-ITSAKVMMEDG--RSKGFGFVCFSAPEEATKAVTE 354
Query: 257 FQGKVIMC--LVIALS 270
G++I+ L +AL+
Sbjct: 355 MNGRIIVTKPLYVALA 370
Score = 43.9 bits (102), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 74/155 (47%), Gaps = 15/155 (9%)
Query: 114 HEDIR--ALFEQ---HGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFE 167
H DI LFE+ G VL I + R+ G A+V P +A AL+ + +
Sbjct: 19 HADITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDMIK 78
Query: 168 GRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEV 227
GR +++ +++ ++P + N+FI NL K + + F + G +++S +V
Sbjct: 79 GRPIRIMWSQ---RDP----SLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFG-NILSCKV 130
Query: 228 IFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
D S GYGFV F++++ A +I G ++
Sbjct: 131 A-QDESGVSKGYGFVHFETEEAANKSIDKVNGMLL 164
>gi|226291029|gb|EEH46457.1| RNA binding domain-containing protein [Paracoccidioides
brasiliensis Pb18]
Length = 273
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 68/136 (50%), Gaps = 6/136 (4%)
Query: 80 FVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR 139
F D++S N E + E + N+ + T +D++ + G +L + + S+
Sbjct: 66 FRDNTSILRSNPEVKPNET----IYIGNLFFEVTADDLKRDLSKFGNILAVRIVYDSRGM 121
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI 199
+RG A+V S D A AA+N + +EGR + VNY+ NP P +P T LFI
Sbjct: 122 SRGFAYVQFDSIDAAEAAINEMNMTIYEGRRVVVNYSSRGSANPTPTRSNEP--TRTLFI 179
Query: 200 ANLSFEARAKDLREFF 215
NLSFE ++L E F
Sbjct: 180 GNLSFEMSDRELNELF 195
>gi|255556436|ref|XP_002519252.1| Flowering time control protein FCA, putative [Ricinus communis]
gi|223541567|gb|EEF43116.1| Flowering time control protein FCA, putative [Ricinus communis]
Length = 811
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 88/181 (48%), Gaps = 15/181 (8%)
Query: 90 NTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFV-- 146
N+ E S +L +VP T++ EDIR LFEQHG V+++ L + + +G FV
Sbjct: 150 NSPDHTECGSFAKLFVGSVPRTASEEDIRPLFEQHGNVIEVALIKDKRTGQQQGCCFVKY 209
Query: 147 -TMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFE 205
T D A AL+N + ++V +A +++ + LF+ +L+ +
Sbjct: 210 ATSEEADRAIRALHNQHTLPGGIGPIQVRFADGERER-------LGAVEYKLFVGSLNKQ 262
Query: 206 ARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG--KVIM 263
A K++ E F G V + D ++S G GFV + S+++A AI+A G K+
Sbjct: 263 ATEKEVEEIFSPYGH--VEDVYLMRDEMKQSRGCGFVKYSSREMALAAINALNGIYKMRG 320
Query: 264 C 264
C
Sbjct: 321 C 321
>gi|4678944|emb|CAB41335.1| putative protein [Arabidopsis thaliana]
Length = 546
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 84/174 (48%), Gaps = 15/174 (8%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNL 161
R+ N+P T T+E + L E+HG V + +S R+R F TM S ++A A + L
Sbjct: 77 RVYIGNIPRTVTNEQLTKLVEEHGAVEKVMYDKYS-GRSRRFGFATMKSVEDANAVVEKL 135
Query: 162 E-------SYEFEGRTLKVNYAK--IKKKNPFPPVQPKPFA----TFNLFIANLSFEARA 208
S EGR +KVN + I +Q + A + +++ NL+ +
Sbjct: 136 NGNSLFLVSQTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLA-KTVT 194
Query: 209 KDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
K++ E SE VVSA+V +S G+GFV+F S++ E AI A ++
Sbjct: 195 KEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLL 248
>gi|383862667|ref|XP_003706805.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Megachile rotundata]
Length = 630
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 96/196 (48%), Gaps = 20/196 (10%)
Query: 92 EQREEEYSK-----TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFV 146
++RE+E + T + +N T + ++ +FE++GT+ ++ + ++RG FV
Sbjct: 178 KEREKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFV 237
Query: 147 TMGSPDEATAALNNLESYEF-EGRTLKVNYAKIKK------KNPFPPVQPKPFATF---N 196
PD A A+ L E EG+ + V A+ K K F ++ + + + N
Sbjct: 238 AFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLSRYQGVN 297
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
L++ NL + LR F G + SA+V+ D RS G+GFV F + + A A++
Sbjct: 298 LYVKNLDDSINDERLRREFAPFGT-ITSAKVMMEDG--RSKGFGFVCFSAPEEATKAVTE 354
Query: 257 FQGKVIMC--LVIALS 270
G++I+ L +AL+
Sbjct: 355 MNGRIIVTKPLYVALA 370
Score = 43.9 bits (102), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 74/155 (47%), Gaps = 15/155 (9%)
Query: 114 HEDIR--ALFEQ---HGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFE 167
H DI LFE+ G VL I + R+ G A+V P +A AL+ + +
Sbjct: 19 HADITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDMIK 78
Query: 168 GRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEV 227
GR +++ +++ ++P + N+FI NL K + + F + G +++S +V
Sbjct: 79 GRPIRIMWSQ---RDP----SLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFG-NILSCKV 130
Query: 228 IFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
D S GYGFV F++++ A +I G ++
Sbjct: 131 A-QDESGVSKGYGFVHFETEEAANKSIDKVNGMLL 164
>gi|50289655|ref|XP_447259.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526568|emb|CAG60192.1| unnamed protein product [Candida glabrata]
Length = 416
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 100/215 (46%), Gaps = 18/215 (8%)
Query: 62 PKKVSPFVFHFSATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALF 121
P++VS V +A+ Q+ D S + + E S L N+ + T + ++ F
Sbjct: 20 PEEVSQEVEGDNAS-QENDDDKPSVVPASATKGGRETSDRVLYVGNLDKSITEDLLKQYF 78
Query: 122 EQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+ G + ++++ KN AFV +A AL L + E +TLK+N+A
Sbjct: 79 QAGGPIQNVKIIEDMKNEYVNYAFVEYIRSHDANVALQTLNGVQLENKTLKINWA----- 133
Query: 182 NPFPPVQ-PKPFATFNLFIANLSF----EARAKDLREFFISEGWDVVSAEVIFHDNPRRS 236
F Q + TFNLF+ +L+ E A REF + A V++ RS
Sbjct: 134 --FETQQAAENDDTFNLFVGDLNVDVDDETLAGTFREFPT-----FIQAHVMWDMQTGRS 186
Query: 237 AGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271
GYGFVSF +++ A+ A+ A QGK + I +++
Sbjct: 187 RGYGFVSFSNQEEAQKAMDAMQGKDLSGRQIRINW 221
Score = 37.4 bits (85), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 29/44 (65%)
Query: 139 RNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKN 182
R+RG FV+ + +EA A++ ++ + GR +++N+A +++N
Sbjct: 185 RSRGYGFVSFSNQEEAQKAMDAMQGKDLSGRQIRINWATKRERN 228
>gi|32482072|gb|AAP84392.1| FCA protein [Triticum aestivum]
Length = 736
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 79/166 (47%), Gaps = 13/166 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE---ATAA 157
+L +VP T+ +D+R LFE HG VL++ L K +G FV + +E A A
Sbjct: 120 KLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRA 179
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
L+N + ++V Y +K+ LF+A+L+ +A AK++ E F
Sbjct: 180 LHNQCTIPGAMGPVQVRYVDGEKER-------HGSIEHKLFVASLNKQATAKEIEEIFAP 232
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
G V I D R+S G G V F SK+ A A+++ G IM
Sbjct: 233 FGH--VEDVYIMRDGMRQSRGCGLVKFSSKEPALAAMNSLSGTYIM 276
>gi|380017405|ref|XP_003692647.1| PREDICTED: heterogeneous nuclear ribonucleoprotein 27C-like [Apis
florea]
Length = 439
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 82/169 (48%), Gaps = 11/169 (6%)
Query: 89 VNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVT 147
V TE ++E K +L + W +T E+++ F ++G V+D + +S+ R+RG FVT
Sbjct: 3 VKTEMDDDE--KGKLFVGGLSWETTQENLQRYFGRYGEVIDCVVMKNSESGRSRGFGFVT 60
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF-NLFIANLSFEA 206
P L N ++ +GRT+ K NP +PK F +F+ L
Sbjct: 61 FSDPANVPLVLQN-GPHQLDGRTIDP-----KPCNPRTQQKPKRSGGFPKVFLGGLPSNV 114
Query: 207 RAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
DLR FF G V+ +++ ++S G+GF+SF+ + + ++
Sbjct: 115 TETDLRSFFTRFG-KVMEVVIMYDQEKKKSRGFGFLSFEDEDAVDRCVA 162
>gi|213625217|gb|AAI70091.1| LOC397919 protein [Xenopus laevis]
Length = 704
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 87/182 (47%), Gaps = 11/182 (6%)
Query: 90 NTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMG 149
N E ++E S+T L +N+P++++ E+++ +FE DI + + N+G+A+V
Sbjct: 365 NAENKKERDSRT-LFVKNIPYSTSAEELQEIFE---NAKDIRIPTGNDGSNKGIAYVEFS 420
Query: 150 SPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAK 209
+ EA AL + E EGR+L V++ K +N P + L + NLS+ A
Sbjct: 421 TEAEANKALEEKQGAEIEGRSLFVDFTGEKSQNSGGRRGPAGDSKV-LVVNNLSYSATED 479
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIAL 269
LRE F + + N R+ G+ FV F S + A+ A+ + + I L
Sbjct: 480 SLREVFEK------ATSIRIPQNQGRAKGFAFVEFSSMEDAKEAMDSCNNTEVEGRSIRL 533
Query: 270 SY 271
+
Sbjct: 534 EF 535
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 94/196 (47%), Gaps = 17/196 (8%)
Query: 80 FVDSSSAAAVNTEQREEEYSKTR-LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKN 138
FVD + + N+ R ++ LV N+ +++T + +R +FE+ T + I ++
Sbjct: 443 FVDFTGEKSQNSGGRRGPAGDSKVLVVNNLSYSATEDSLREVFEKA-TSIRI---PQNQG 498
Query: 139 RNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA---KIKKKNPFPPVQPKPFATF 195
R +G AFV S ++A A+++ + E EGR++++ ++ + VQ K
Sbjct: 499 RAKGFAFVEFSSMEDAKEAMDSCNNTEVEGRSIRLEFSQGGGPQGGGRGGSVQSK----- 553
Query: 196 NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
LF+ LS + + L+E F ++A ++ + S G+GFV F S + A+ A
Sbjct: 554 TLFVRGLSEDTTEETLKEAFDGS----INARIVTDRDTGASKGFGFVDFSSAEDAKAARE 609
Query: 256 AFQGKVIMCLVIALSY 271
A + I + L +
Sbjct: 610 AMEDGEIDGNKVTLDF 625
>gi|302693014|ref|XP_003036186.1| hypothetical protein SCHCODRAFT_66185 [Schizophyllum commune H4-8]
gi|300109882|gb|EFJ01284.1| hypothetical protein SCHCODRAFT_66185 [Schizophyllum commune H4-8]
Length = 632
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 11/171 (6%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T L +N+ T E+ ALF + G V + + R+RG FV + +EA A++N
Sbjct: 227 TNLYIKNIDPEVTDEEFEALFREQGNVTSSVIQRDEEGRSRGFGFVNYETHEEAQKAVDN 286
Query: 161 LESYEFEGRTLKVNYA--KIKKKNPFPPVQPKP-------FATFNLFIANLSFEARAKDL 211
L +F GR L V+ A K +++ + + NL++ NL + + L
Sbjct: 287 LNDKDFHGRKLFVSRAQKKAEREEELRKAHEQARLEKLSKYQGLNLYVKNLDDDVDDEKL 346
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
R F E + +++ + D+ S G+GFV + S + A A++ K+I
Sbjct: 347 RAEF--EPFGTITSAKVMRDDKGVSKGFGFVCYSSPEEASKAVAEMNNKMI 395
Score = 37.7 bits (86), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 42/84 (50%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATA 156
+Y L +N+ E +RA FE GT+ ++ K ++G FV SP+EA+
Sbjct: 326 KYQGLNLYVKNLDDDVDDEKLRAEFEPFGTITSAKVMRDDKGVSKGFGFVCYSSPEEASK 385
Query: 157 ALNNLESYEFEGRTLKVNYAKIKK 180
A+ + + + L V++A+ ++
Sbjct: 386 AVAEMNNKMIGSKPLYVSHAQRRE 409
Score = 37.4 bits (85), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 196 NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
N+FI NL + K L + F + G +V+S +V D S GYGFV +++ + AE AI
Sbjct: 135 NIFIKNLDEQIDNKALHDTFAAFG-NVLSCKVAT-DEHGNSKGYGFVHYETAEAAENAIK 192
Query: 256 AFQGKVI 262
G ++
Sbjct: 193 NVNGMLL 199
>gi|148226518|ref|NP_001081557.1| nucleolin [Xenopus laevis]
gi|295899|emb|CAA51460.1| nucleolin [Xenopus laevis]
Length = 705
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 87/182 (47%), Gaps = 11/182 (6%)
Query: 90 NTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMG 149
N E ++E S+T L +N+P++++ E+++ +FE DI + + N+G+A+V
Sbjct: 366 NAENKKERDSRT-LFVKNIPYSTSAEELQEIFE---NAKDIRIPTGNDGSNKGIAYVEFS 421
Query: 150 SPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAK 209
+ EA AL + E EGR+L V++ K +N P + L + NLS+ A
Sbjct: 422 TEAEANKALEEKQGAEIEGRSLFVDFTGEKSQNSGGRRGPAGDSKV-LVVNNLSYSATED 480
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIAL 269
LRE F + + N R+ G+ FV F S + A+ A+ + + I L
Sbjct: 481 SLREVFEK------ATSIRIPQNQGRAKGFAFVEFSSMEDAKEAMDSCNNTEVEGRSIRL 534
Query: 270 SY 271
+
Sbjct: 535 EF 536
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 94/196 (47%), Gaps = 17/196 (8%)
Query: 80 FVDSSSAAAVNTEQREEEYSKTR-LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKN 138
FVD + + N+ R ++ LV N+ +++T + +R +FE+ T + I ++
Sbjct: 444 FVDFTGEKSQNSGGRRGPAGDSKVLVVNNLSYSATEDSLREVFEKA-TSIRI---PQNQG 499
Query: 139 RNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA---KIKKKNPFPPVQPKPFATF 195
R +G AFV S ++A A+++ + E EGR++++ ++ + VQ K
Sbjct: 500 RAKGFAFVEFSSMEDAKEAMDSCNNTEVEGRSIRLEFSQGGGPQGGGRGGSVQSK----- 554
Query: 196 NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
LF+ LS + + L+E F ++A ++ + S G+GFV F S + A+ A
Sbjct: 555 TLFVRGLSEDTTEETLKEAFDGS----INARIVTDRDTGASKGFGFVDFSSAEDAKAARE 610
Query: 256 AFQGKVIMCLVIALSY 271
A + I + L +
Sbjct: 611 AMEDGEIDGNKVTLDF 626
>gi|383857431|ref|XP_003704208.1| PREDICTED: heterogeneous nuclear ribonucleoprotein 27C-like
[Megachile rotundata]
Length = 443
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 82/169 (48%), Gaps = 11/169 (6%)
Query: 89 VNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVT 147
V TE ++E K +L + W +T E+++ F ++G V+D + +S+ R+RG FVT
Sbjct: 3 VKTEMDDDE--KGKLFVGGLSWETTQENLQRYFGRYGEVIDCVVMKNSESGRSRGFGFVT 60
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF-NLFIANLSFEA 206
P L N ++ +GRT+ K NP +PK F +F+ L
Sbjct: 61 FSDPANVPLVLQN-GPHQLDGRTIDP-----KPCNPRTQQKPKRSGGFPKVFLGGLPSNV 114
Query: 207 RAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
DLR FF G V+ +++ ++S G+GF+SF+ + + ++
Sbjct: 115 TETDLRTFFNRYG-KVMEVVIMYDQEKKKSRGFGFLSFEDEDAVDRCVA 162
>gi|1054915|gb|AAA81023.1| CEBP-1 [Dianthus caryophyllus]
Length = 292
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 80/165 (48%), Gaps = 7/165 (4%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
+L N+P+ E + +F+ G V E+ + + +R+RG FVTM + +EA A+
Sbjct: 113 KLYVGNLPFDVDSEKLANMFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVEM 172
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF--NLFIANLSFEARAKDLREFFISE 218
SYE GR L VN K + P P+ F ++ NL ++ D E SE
Sbjct: 173 FHSYELNGRLLTVN--KAAPRGSRPEKAPREFCPLLSESYVGNLPWDVD-NDRLEQLSSE 229
Query: 219 GWDVVSAEVIFHDNPRRSAGYGFVSFKSK-KVAETAISAFQGKVI 262
V+SA V+ RS G+GFV+ S+ ++ + + A G+ +
Sbjct: 230 HGKVLSARVVSDRETERSRGFGFVTMASETEMNDATLGALDGESL 274
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIEL-SMHSKNRNRGLAFVTMGSPDEAT-AALNNLESY 164
N+PW ++ + L +HG VL + S R+RG FVTM S E A L L+
Sbjct: 213 NLPWDVDNDRLEQLSSEHGKVLSARVVSDRETERSRGFGFVTMASETEMNDATLGALDGE 272
Query: 165 EFEGRTLKVNYAKIKKKNPF 184
EGR ++VN A+ + + F
Sbjct: 273 SLEGRPIRVNVAEERPRRTF 292
>gi|260943806|ref|XP_002616201.1| hypothetical protein CLUG_03443 [Clavispora lusitaniae ATCC 42720]
gi|238849850|gb|EEQ39314.1| hypothetical protein CLUG_03443 [Clavispora lusitaniae ATCC 42720]
Length = 419
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 78/167 (46%), Gaps = 8/167 (4%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAALNNL 161
L + W E ++ FE+ G V+ + + S ++RG +V S A ALN L
Sbjct: 183 LFVGRLSWNVDDEWLKREFEEAGGVISARVMIERSTGKSRGYGYVDFSSKAAAEKALNEL 242
Query: 162 ESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF------NLFIANLSFEARAKDLREFF 215
+ E +GR + ++ + K K P + K F LFI NLSF L E F
Sbjct: 243 QGKEIDGRPVNLDMSTGKPKTPASNDRAKKFGDVPSAPSDTLFIGNLSFNTERNKLFEIF 302
Query: 216 ISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
G VVS + H + ++ G+G+V F S + A+ A+++ G+ +
Sbjct: 303 GEYG-TVVSCRLPTHPDTQQPKGFGYVQFSSVEEAQNALNSLNGEYL 348
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
LF+ LS+ + L+ F E V+SA V+ + +S GYG+V F SK AE A++
Sbjct: 183 LFVGRLSWNVDDEWLKREF-EEAGGVISARVMIERSTGKSRGYGYVDFSSKAAAEKALNE 241
Query: 257 FQGKVIMCLVIAL 269
QGK I + L
Sbjct: 242 LQGKEIDGRPVNL 254
>gi|60459259|gb|AAX20016.1| FCA gamma [Pisum sativum]
Length = 743
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 82/166 (49%), Gaps = 13/166 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFV---TMGSPDEATAA 157
+L +VP T+T EDIR LFE+HG V+++ L K +++G F+ T D+A A
Sbjct: 92 KLFVGSVPRTATEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRA 151
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
L+N + ++V YA +++ + LF+ +L+ +A K++ E F
Sbjct: 152 LHNQHTLPGGVGPIQVRYADGERER-------LGAVEYKLFVGSLNKQALVKEVEEVFSK 204
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
G V + D+ ++S G GFV + + +A AI+ G M
Sbjct: 205 YG--RVEDVYLMRDDKKQSRGCGFVKYSHRDMALAAINGLNGIYTM 248
>gi|320585953|gb|EFW98632.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Grosmannia clavigera kw1407]
Length = 488
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 90/215 (41%), Gaps = 9/215 (4%)
Query: 57 TFPITPKKVSPFVFHFSATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHED 116
T PI SP Q + +SAAA + E +K L + T +
Sbjct: 47 TNPIPTAITSPL----GGGDQSGLMSPTSAAAYGGRRSAPEPNKRALYVGGLDQRVTEDV 102
Query: 117 IRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176
+R +FE G V ++++ + FV P A A+ NL ++VN+A
Sbjct: 103 LRQIFETTGHVQNVKIIPDKNAKGYNYGFVEYDDPGAAERAMQNLNGRRVHQSEIRVNWA 162
Query: 177 KIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRS 236
+ F++F+ +LS E + L + F S G V A V++ RS
Sbjct: 163 YQSNTT----SKEDTSGHFHIFVGDLSNEVNDEVLTQAFTSFG-SVSEARVMWDMKTGRS 217
Query: 237 AGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271
GYGFV+F+ + AE A+S+ G+ + I ++
Sbjct: 218 RGYGFVAFRDRPDAEKALSSMDGEWLGSRAIRCNW 252
Score = 40.8 bits (94), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 6/85 (7%)
Query: 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAA 157
+ T V P+T T D+ LF+ G V++ +RG AF+ + S + A A
Sbjct: 301 WQTTCYVGNLTPYT-TQNDLVPLFQNFGYVVESRFQ-----SDRGFAFIKLDSHENAAMA 354
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKN 182
+ L Y GR LK ++ K K N
Sbjct: 355 ICQLNGYNVNGRPLKCSWGKDKTPN 379
>gi|432937502|ref|XP_004082431.1| PREDICTED: polyadenylate-binding protein 4-like [Oryzias latipes]
Length = 629
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 85/167 (50%), Gaps = 14/167 (8%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ +FE++G L +++ S ++RG FV+ ++A A+ + E G+T+ V
Sbjct: 205 EQLKEMFEKYGKTLSVKVMTDSSGKSRGFGFVSFEKHEDANKAVEEINGTELNGKTVFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKMERQAELKRKFELLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIALS 270
+V+ D RS G+GFV F S + A A++ G+++ L +AL+
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
>gi|59802584|gb|AAX07527.1| unknown [Prosthecobacter dejongeii]
Length = 111
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAAL 158
T++ N+P+T+ ++RALF +GTV D+ L M H+ R RG AFVTM S A+
Sbjct: 4 NTKMYVGNLPFTAMESELRALFNDYGTVTDMHLPMDHATGRPRGFAFVTMDSAMAMNEAI 63
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNP 183
L +F GR+L +N A+ K+ P
Sbjct: 64 TALNGKDFGGRSLTINEARPKEDRP 88
>gi|320580860|gb|EFW95082.1| poly(A+) RNA-binding protein, putative [Ogataea parapolymorpha
DL-1]
Length = 405
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 86/163 (52%), Gaps = 16/163 (9%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEF 166
N+P+ +T D++ LF + G V+ ++ + S+ R+RG+ V + D A++ + +
Sbjct: 75 NLPYHTTWYDLKDLFREVGEVVRADV-VTSRGRSRGMGTVEFANKDLVQEAISKFDRTMY 133
Query: 167 EGRTL----------KVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFI 216
EGR + K N + +++ PP + + +FI NL F R +DL++ F
Sbjct: 134 EGREIFVREDLPPPEKENTGREERRRNAPPPSTE---GYEVFIGNLPFSVRWQDLKDLFK 190
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
S G ++ A+V D+ RS G+G V F++ + A+ AI+ F G
Sbjct: 191 SCG-PIIRADV-REDHRGRSKGFGTVIFENSEDADRAIADFNG 231
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 74/162 (45%), Gaps = 17/162 (10%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEF 166
N+P++ +D++ LF+ G ++ ++ + R++G V + ++A A+ + Y+
Sbjct: 175 NLPFSVRWQDLKDLFKSCGPIIRADVREDHRGRSKGFGTVIFENSEDADRAIADFNGYDM 234
Query: 167 EGRTLKVNYAKIKKKNPFPPV-------------QPKPFATFNLFIANLSFEARAKDLRE 213
+GR ++V K K P P Q +P T +F NL +E DL +
Sbjct: 235 DGRRIEVRLGKQFNKEPQGPTESRNSEFVAGVVGQGEPNDT--IFADNLPWETSETDLFD 292
Query: 214 FFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
F S V AE+ F D+ R AG V F+ A A++
Sbjct: 293 LFGSIA-SVKRAELQF-DDLNRPAGTAVVQFQELDGAIAAVN 332
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 40/75 (53%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLE 162
+ A N+PW ++ D+ LF +V EL NR G A V D A AA+N L+
Sbjct: 276 IFADNLPWETSETDLFDLFGSIASVKRAELQFDDLNRPAGTAVVQFQELDGAIAAVNQLD 335
Query: 163 SYEFEGRTLKVNYAK 177
+YE+ R L V++AK
Sbjct: 336 NYEYGRRRLHVSFAK 350
>gi|213623691|gb|AAI70089.1| LOC397919 protein [Xenopus laevis]
Length = 704
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 87/182 (47%), Gaps = 11/182 (6%)
Query: 90 NTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMG 149
N E ++E S+T L +N+P++++ E+++ +FE DI + + N+G+A+V
Sbjct: 365 NAENKKERDSRT-LFVKNIPYSTSAEELQEIFE---NAKDIRIPTGNDGSNKGIAYVEFS 420
Query: 150 SPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAK 209
+ EA AL + E EGR+L V++ K +N P + L + NLS+ A
Sbjct: 421 TEAEANKALEEKQGAEIEGRSLFVDFTGEKSQNSGGRRGPAGDSKV-LVVNNLSYSATED 479
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIAL 269
LRE F + + N R+ G+ FV F S + A+ A+ + + I L
Sbjct: 480 SLREVFEK------ATSIRIPQNQGRAKGFAFVEFSSMEDAKEAMDSCNNTEVEGRSIRL 533
Query: 270 SY 271
+
Sbjct: 534 EF 535
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 94/196 (47%), Gaps = 17/196 (8%)
Query: 80 FVDSSSAAAVNTEQREEEYSKTR-LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKN 138
FVD + + N+ R ++ LV N+ +++T + +R +FE+ T + I ++
Sbjct: 443 FVDFTGEKSQNSGGRRGPAGDSKVLVVNNLSYSATEDSLREVFEKA-TSIRI---PQNQG 498
Query: 139 RNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA---KIKKKNPFPPVQPKPFATF 195
R +G AFV S ++A A+++ + E EGR++++ ++ + VQ K
Sbjct: 499 RAKGFAFVEFSSMEDAKEAMDSCNNTEVEGRSIRLEFSQGGGPQGGGRGGSVQSK----- 553
Query: 196 NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
LF+ LS + + L+E F ++A ++ + S G+GFV F S + A+ A
Sbjct: 554 TLFVRGLSEDTTEETLKEAFDGS----INARIVTDRDTGASKGFGFVDFSSSEDAKAARE 609
Query: 256 AFQGKVIMCLVIALSY 271
A + I + L +
Sbjct: 610 AMEDGEIDGNKVTLDF 625
>gi|88911212|gb|ABD58896.1| chloroplast single strand DNA binding protein [Mesostigma viride]
Length = 299
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 81/189 (42%), Gaps = 21/189 (11%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAA 157
+ T+L N+ W+ E + F Q G V E+ + + R+RG AFVTM SPD A A
Sbjct: 88 ASTKLYVGNLAWSCDDEMLNQAFSQFGEVKAAEVVLDRESGRSRGFAFVTMASPDAAEKA 147
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNP------------------FPPVQPKPFATFN-LF 198
L+ E GR ++VN+ + K + + P N L+
Sbjct: 148 RRGLDGTELAGRAIRVNFPQPKGERAPRAERGERSERSERSERTYTPRGDGEAGDANRLY 207
Query: 199 IANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ 258
+ NL + L + F+ G V A V+ + RS G+ FV+ + + A A++
Sbjct: 208 VGNLPWSMDDGMLEDLFMEFG-TVNYARVVMDRDSGRSRGFAFVALSTPEEANEAMANLD 266
Query: 259 GKVIMCLVI 267
G+ I I
Sbjct: 267 GEEIGGRTI 275
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEA 154
E RL N+PW+ + LF + GTV + M R+RG AFV + +P+EA
Sbjct: 199 EAGDANRLYVGNLPWSMDDGMLEDLFMEFGTVNYARVVMDRDSGRSRGFAFVALSTPEEA 258
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKN 182
A+ NL+ E GRT++VN A N
Sbjct: 259 NEAMANLDGEEIGGRTIRVNLATKSSGN 286
>gi|18150431|gb|AAL61622.1|AF414188_1 FCA gamma [Brassica napus]
Length = 715
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 79/172 (45%), Gaps = 13/172 (7%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFV---TMGSP 151
+ S +L +VP T+T E++R FEQHG VL++ + + +G FV T
Sbjct: 97 DRSSMVKLFVGSVPRTATEEEVRPFFEQHGNVLEVAFIKDKRTGQQQGCCFVKYATSEDA 156
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDL 211
D A AL+N + ++V YA +++ F LF+ +L+ +A ++
Sbjct: 157 DRAIRALHNQITLPGGTGLVQVRYADGERER-------IGAVEFKLFVGSLNKQATENEV 209
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
E F+ G V + D R+S G GFV + SK+ A AI G M
Sbjct: 210 EELFLQFGR--VEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNGTYTM 259
>gi|449547299|gb|EMD38267.1| hypothetical protein CERSUDRAFT_113433 [Ceriporiopsis subvermispora
B]
Length = 679
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 96/220 (43%), Gaps = 27/220 (12%)
Query: 68 FVFHFSATTQDPFVDSSSAAAVNTEQ--------REEEYSK--------TRLVAQNVPWT 111
FV + +A D + + + +N ++ R+E SK T + +N+
Sbjct: 180 FVHYETAEAADTAIKAVNGMLLNDKKVYVGPHISRKERQSKIEEMKAQFTNVYVKNIDAE 239
Query: 112 STHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTL 171
T E+ R LFEQ G V + + R++G FV +EA + +L +E G+ L
Sbjct: 240 VTDEEFRQLFEQFGNVTSAVIQRDEEGRSKGFGFVNFEKHEEAQKGVESLHDFELNGKKL 299
Query: 172 KVNYAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDV 222
V A+ K + + + + + + NL+I NL E + LR+ F E +
Sbjct: 300 FVTRAQKKAEREEELRKSYEQAKNEKLSKYQGVNLYIKNLEDEVDDERLRQEF--EPFGT 357
Query: 223 VSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
+++ + D S G+GFV F S A A++ K+I
Sbjct: 358 ITSAKVMRDEKGSSKGFGFVCFSSPDEATKAVAEMNNKMI 397
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 69/144 (47%), Gaps = 10/144 (6%)
Query: 120 LFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178
+F G V I + + R+ G A+V + + AL L +GR ++ +++
Sbjct: 67 IFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQLNYSLIKGRACRIMWSQ- 125
Query: 179 KKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAG 238
++P + N+FI NL K L + F + G +V+S +V D RS G
Sbjct: 126 --RDP----ALRKTGQGNIFIKNLDEGIDNKALHDTFAAFG-NVLSCKVA-TDEHGRSKG 177
Query: 239 YGFVSFKSKKVAETAISAFQGKVI 262
YGFV +++ + A+TAI A G ++
Sbjct: 178 YGFVHYETAEAADTAIKAVNGMLL 201
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATA 156
+Y L +N+ E +R FE GT+ ++ K ++G FV SPDEAT
Sbjct: 328 KYQGVNLYIKNLEDEVDDERLRQEFEPFGTITSAKVMRDEKGSSKGFGFVCFSSPDEATK 387
Query: 157 ALNNLESYEFEGRTLKVNYAKIKK 180
A+ + + + L V+ A+ ++
Sbjct: 388 AVAEMNNKMIGTKPLYVSLAQRRE 411
>gi|297834512|ref|XP_002885138.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297330978|gb|EFH61397.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 542
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 88/180 (48%), Gaps = 17/180 (9%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N+ T + + LF Q+GTV + + R+RG FV P+ A A+++
Sbjct: 200 TNVYVKNLIENITEDILHRLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCHPENAKKAVDS 259
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF---------NLFIANLSFEARAKDL 211
L + +TL V A +K+ ++ K F NL++ NLS L
Sbjct: 260 LHGRQVGSKTLFVGKA-LKRDERREMLKHKYRDNFIAKSNMRWSNLYVKNLSESMNDTTL 318
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSK---KVAETAISAF--QGKVIMCLV 266
RE F G +VSA+V+ H+N RS G+GFV F ++ K A+ ++ F GK+++ V
Sbjct: 319 REIFGRYG-QIVSAKVMRHENG-RSKGFGFVCFSNREESKQAKRYLNGFSVDGKLLVVRV 376
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 79/174 (45%), Gaps = 10/174 (5%)
Query: 93 QREEEYSK----TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTM 148
QR+ Y + L +N+ + T + +F G +L ++ + +++G FV
Sbjct: 98 QRDLSYRRRTGFGNLYVKNLDISITSSGLERMFNPFGVILSCKV-VEENGQSKGFGFVQF 156
Query: 149 GSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARA 208
+ A A + L +G+ L V AK KN + T N+++ NL E
Sbjct: 157 ETEQSAVTARSALHGSMVDGKKLFV--AKFINKNERVAMAGNKGFT-NVYVKNL-IENIT 212
Query: 209 KDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
+D+ S+ + VS+ V+ D RS G+GFV+F + A+ A+ + G+ +
Sbjct: 213 EDILHRLFSQ-YGTVSSVVVMRDGMGRSRGFGFVNFCHPENAKKAVDSLHGRQV 265
>gi|221112748|ref|XP_002162771.1| PREDICTED: ELAV-like protein 3-like [Hydra magnipapillata]
Length = 376
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 84/178 (47%), Gaps = 12/178 (6%)
Query: 85 SAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR-NRGL 143
S +N EQ ++ + T L+ +P T E++R LF G + +L R + G
Sbjct: 29 SGYPLNLEQDPDDENPTNLIINYLPQEMTEEELRTLFSSVGPLESCKLIRDKVTRASLGY 88
Query: 144 AFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLS 203
AFV +A A+ +L+ + +T+KV+ A+ P NL+++ L
Sbjct: 89 AFVNYQHAADARKAIESLQGMKLTNKTIKVSVAR-------PSC--TEIKNANLYVSGLP 139
Query: 204 FEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKV 261
DLRE F S G +++ +V++ ++ +S G GFV F + AE AI+ ++
Sbjct: 140 LTCNENDLRELFASYG-SIITIKVLYEES-GQSRGVGFVRFDKRNDAEAAINGLNNRI 195
>gi|32482385|gb|AAP84382.1| FCA protein [Triticum aestivum]
Length = 700
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 79/166 (47%), Gaps = 13/166 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE---ATAA 157
+L + P T+ +D+R LFE HG VL++ L K +G FV + +E A A
Sbjct: 106 KLFVGSAPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRA 165
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
L+N + ++V A +K+ LF+A+L+ +A AK++ E F
Sbjct: 166 LHNQCTIPGAMGPVQVRCADGEKER-------HGSIEHKLFVASLNKQATAKEIEEIFAP 218
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
G V I D R+S G GFV F SK+ A A+++ G IM
Sbjct: 219 FGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIM 262
>gi|11045077|emb|CAB41488.2| putative FCA orthologue [Brassica napus]
Length = 384
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 103/244 (42%), Gaps = 30/244 (12%)
Query: 24 QSHEAPFVSLLQKQQKQHYNYFFPLSSSPFHAYTFPITPKKVSPFVFHFSATTQDPFVDS 83
QS +A S + Q +Y L+S P P++ +K + S+ T F D
Sbjct: 45 QSPDAGGYSGGRGIQSTGPDYSVRLTSPPIQQ---PLSGQKRGRPLLEQSSFTGTDFTDR 101
Query: 84 SSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRG 142
SS +L +VP T+T E++R FEQHG VL++ + + +G
Sbjct: 102 SSM--------------VKLFVGSVPRTATEEEVRPFFEQHGNVLEVAFIKDKRTGQQQG 147
Query: 143 LAFV---TMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI 199
FV T D A AL+N + ++V YA +++ F LF+
Sbjct: 148 CCFVKYATSEDADRAIRALHNQITLPGGTGLVQVRYADGERER-------IGAVEFKLFV 200
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+L+ +A ++ E F+ G V + D R+S G GFV + SK+ A AI G
Sbjct: 201 GSLNKQATENEVEELFLQFGR--VEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNG 258
Query: 260 KVIM 263
M
Sbjct: 259 TYTM 262
>gi|357155243|ref|XP_003577055.1| PREDICTED: flowering time control protein FCA-like [Brachypodium
distachyon]
Length = 749
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 80/166 (48%), Gaps = 13/166 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE---ATAA 157
+L +VP T+ +D+R LF HG VL++ L K +G FV + +E A A
Sbjct: 128 KLFVGSVPRTANEDDVRPLFADHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRA 187
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
L+N + ++V YA +K+ LF+A+L+ +A AK++ E F
Sbjct: 188 LHNQCTIPGAMGPVQVRYADGEKER-------HGSIEHKLFVASLNKQATAKEIEEIFSP 240
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
G V I D R+S G GFV F SK+ A A+++ G +M
Sbjct: 241 FGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYVM 284
>gi|168054234|ref|XP_001779537.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669018|gb|EDQ55613.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 194
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 81/181 (44%), Gaps = 27/181 (14%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIE----LSMHSKNRNRGLAFVTMGSPDEATAA 157
+L N+PWT D L E G + +E + R+RG AFVTM + + A +
Sbjct: 1 KLYVGNLPWTC---DSAQLAEICGDISSVEAVDVVYDQQSGRSRGFAFVTMSTNEGAQSV 57
Query: 158 LNNLESYEFEGRTLKV----------------NYAKIKKKNPFPPVQPKPFATFN---LF 198
++ L+ +F GR LKV N + +++ PP Q N +F
Sbjct: 58 IDRLDGSDFGGRPLKVSFPQPRENRDNKPRFGNNERGDRRSDRPPRQGSDRVLDNTNKMF 117
Query: 199 IANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ 258
I NLS+ A L + F SE VV A+V++ + +S G+GFV+ + A+
Sbjct: 118 IGNLSWSCDADALVQVF-SEYGSVVDAKVVYDRDTGKSRGFGFVTMSAASEVSNAVQNLD 176
Query: 259 G 259
G
Sbjct: 177 G 177
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAALNNLESYE 165
N+ W+ + + +F ++G+V+D ++ ++RG FVTM + E + A+ NL+ E
Sbjct: 120 NLSWSCDADALVQVFSEYGSVVDAKVVYDRDTGKSRGFGFVTMSAASEVSNAVQNLDGAE 179
Query: 166 FEGRTLKVNYA 176
FEGR ++V+ A
Sbjct: 180 FEGREMRVSEA 190
>gi|259013331|ref|NP_001158376.1| Hu/elav protein [Saccoglossus kowalevskii]
gi|32307761|gb|AAP79277.1| Hu/elav [Saccoglossus kowalevskii]
Length = 357
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 81/181 (44%), Gaps = 26/181 (14%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTV---------------LDIELS-MHSKNRN 140
E SKT L+ +P T T E+I++LF G + DI+ S + ++
Sbjct: 33 EDSKTNLIINYLPQTMTQEEIKSLFSSIGEIESCKLIRDKVTGTCPADIQESEFAERGQS 92
Query: 141 RGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIA 200
G AFV +A A+N L + +T+KV+YA+ P Q A NL++
Sbjct: 93 LGYAFVNYHKAADAEKAINTLNGLRLQAKTIKVSYAR-------PSSQAIKDA--NLYVC 143
Query: 201 NLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
L KDL E F S G ++++ ++ S G GF+ F + AE AI + G
Sbjct: 144 GLPKTMAQKDLEEMFTSCG-RIITSRILCDSVTGHSRGVGFIRFDKRTEAEEAIKRYNGT 202
Query: 261 V 261
+
Sbjct: 203 I 203
Score = 38.5 bits (88), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 120 LFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178
LF G V ++++ S N+ +G FVTM + DEA A+ L Y R L+V++
Sbjct: 294 LFGPFGAVTNVKVMRDFSTNKCKGFGFVTMTNYDEAVVAIAXLNGYALGARVLQVSFKTN 353
Query: 179 KKK 181
K K
Sbjct: 354 KHK 356
>gi|226532108|ref|NP_001142375.1| uncharacterized protein LOC100274547 [Zea mays]
gi|194708524|gb|ACF88346.1| unknown [Zea mays]
Length = 163
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 64/133 (48%), Gaps = 12/133 (9%)
Query: 138 NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPF----- 192
R+RG FVTM S +EA AA+ Y F+GR L+VN ++ P P+
Sbjct: 11 GRSRGFGFVTMSSAEEAGAAVEQFNGYTFQGRPLRVNCGPPPPRDGSAPRAPRGGGGGGG 70
Query: 193 ------ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKS 246
+ +++ NL++ L F +G V+ A+VI+ + RS G+GFV++ S
Sbjct: 71 GGSFVDSGNKVYVGNLAWGVDNSTLENLFSEQG-QVLDAKVIYDRDSGRSRGFGFVTYGS 129
Query: 247 KKVAETAISAFQG 259
+ AIS G
Sbjct: 130 AEEVNNAISNLDG 142
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAA 157
S ++ N+ W + + LF + G VLD ++ R+RG FVT GS +E A
Sbjct: 77 SGNKVYVGNLAWGVDNSTLENLFSEQGQVLDAKVIYDRDSGRSRGFGFVTYGSAEEVNNA 136
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPF 184
++NL+ + +GR ++V A+ K + F
Sbjct: 137 ISNLDGIDLDGRQIRVTVAESKPRREF 163
>gi|50308683|ref|XP_454345.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49643480|emb|CAG99432.1| KLLA0E08779p [Kluyveromyces lactis]
Length = 475
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 80/178 (44%), Gaps = 8/178 (4%)
Query: 82 DSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNR 141
+ SAA V Q E S L N+P + + ++ F+ G++ +++ ++
Sbjct: 78 EDDSAAPVLATQGGREKSDKILYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQEC 137
Query: 142 GLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIAN 201
AFV P +A A L E EG+ LK+N+A F Q TFNLF+ +
Sbjct: 138 NYAFVEYFEPHDANVAYQTLNGKEVEGKVLKINWA-------FQSQQVNSDETFNLFVGD 190
Query: 202 LSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
L+ + L F E + A V++ RS GYGFVSF + A+ A+ QG
Sbjct: 191 LNVDVDDATLAGTF-KEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQG 247
Score = 40.8 bits (94), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 26/43 (60%)
Query: 138 NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
R+RG FV+ G D+A A+ + +E GR L++N+A ++
Sbjct: 222 GRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASKRE 264
>gi|296089011|emb|CBI38714.3| unnamed protein product [Vitis vinifera]
Length = 166
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 85/157 (54%), Gaps = 14/157 (8%)
Query: 120 LFEQHGTVLDIELSMHSKNR-NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA-- 176
+F+ HGTV IE+ +++ +RG +VTM S EA AA+ L+ + GR ++V ++
Sbjct: 1 MFKPHGTVQSIEVCRNAETGVSRGSGYVTMSSMREAKAAIAALDGSDVGGREMRVRFSTD 60
Query: 177 -KIKKKNP----FPPVQPKPFAT-FNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFH 230
+++N P++ F + + L++ NL++ + +DLR F S+ VVSA V+
Sbjct: 61 MNFRRRNSEALNSAPMRNLIFESPYKLYVGNLAWAIKPEDLRNHF-SQFGTVVSARVVHD 119
Query: 231 DNPRRSAGYGFVSFKSKKVAETAIS----AFQGKVIM 263
+ YGF+SF S E A+S F+G+ ++
Sbjct: 120 RKAGKHRAYGFLSFSSAAECEAAMSLNGKEFRGRSLV 156
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
+L N+ W ED+R F Q GTV+ + K ++R F++ S E AA+ +
Sbjct: 86 KLYVGNLAWAIKPEDLRNHFSQFGTVVSARVVHDRKAGKHRAYGFLSFSSAAECEAAM-S 144
Query: 161 LESYEFEGRTLKVNYAKIKK 180
L EF GR+L V+ A +K+
Sbjct: 145 LNGKEFRGRSLVVS-AGMKR 163
>gi|148227542|ref|NP_001082094.1| embryonic polyadenylate-binding protein A [Xenopus laevis]
gi|94711253|sp|Q98SP8.2|EPABA_XENLA RecName: Full=Embryonic polyadenylate-binding protein A;
Short=Embryonic poly(A)-binding protein A; Short=ePAB-A;
Short=ePABP-A; AltName: Full=XePABP-A
gi|51258324|gb|AAH80020.1| EPAB protein [Xenopus laevis]
Length = 629
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 92/194 (47%), Gaps = 19/194 (9%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHED-----IRALFEQHGTVLDIELSMHSKNRNRGLAFVT 147
+RE EY + NV + ED +R +F G L +++ M R+RG FV
Sbjct: 178 ERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVN 237
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYA--KIKK----KNPFPPVQPKPFATF---NLF 198
G+ +EA A++ + E GR + V A +I++ K F ++ + + NL+
Sbjct: 238 YGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLY 297
Query: 199 IANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ 258
+ NL LR+ F+ G + SA+V+ S G+GFV F S + A A++
Sbjct: 298 VKNLDDGIDDDRLRKEFLPYG-TITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMN 354
Query: 259 GKVIMC--LVIALS 270
G+++ L +AL+
Sbjct: 355 GRIVSTKPLYVALA 368
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 69/143 (48%), Gaps = 11/143 (7%)
Query: 121 FEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179
F G ++ I + + R+ A++ P +A AL+ + +GR +++ +++
Sbjct: 31 FSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDTMNFEVIKGRPIRIMWSQ-- 88
Query: 180 KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
++P + N+FI NL K L + F + G +++S +V+ ++ R GY
Sbjct: 89 -RDP----GLRKSGVGNVFIKNLDESIDNKALYDTFSAFG-NILSCKVVCDEHGSR--GY 140
Query: 240 GFVSFKSKKVAETAISAFQGKVI 262
GFV F++ + A AI G ++
Sbjct: 141 GFVHFETHEAANRAIQTMNGMLL 163
>gi|13540314|gb|AAK29408.1|AF338225_1 embryonic poly(A) binding protein [Xenopus laevis]
Length = 629
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 92/194 (47%), Gaps = 19/194 (9%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHED-----IRALFEQHGTVLDIELSMHSKNRNRGLAFVT 147
+RE EY + NV + ED +R +F G L +++ M R+RG FV
Sbjct: 178 ERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVN 237
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYA--KIKK----KNPFPPVQPKPFATF---NLF 198
G+ +EA A++ + E GR + V A +I++ K F ++ + + NL+
Sbjct: 238 YGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLY 297
Query: 199 IANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ 258
+ NL LR+ F+ G + SA+V+ S G+GFV F S + A A++
Sbjct: 298 VKNLDDGIDDDRLRKEFLPYG-TITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMN 354
Query: 259 GKVIMC--LVIALS 270
G+++ L +AL+
Sbjct: 355 GRIVSTKPLYVALA 368
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 69/143 (48%), Gaps = 11/143 (7%)
Query: 121 FEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179
F G ++ I + + R+ A++ P +A AL+ + +GR +++ +++
Sbjct: 31 FSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDTMNFEVIKGRPIRIMWSQ-- 88
Query: 180 KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
++P + N+FI NL K L + F + G +++S +V+ ++ R GY
Sbjct: 89 -RDP----GLRKSGVGNVFIKNLDESIDNKALYDTFSAFG-NILSCKVVCDEHGSR--GY 140
Query: 240 GFVSFKSKKVAETAISAFQGKVI 262
GFV F++ + A AI G ++
Sbjct: 141 GFVHFETHEAANRAIQTMNGMLL 163
>gi|367016631|ref|XP_003682814.1| hypothetical protein TDEL_0G02360 [Torulaspora delbrueckii]
gi|359750477|emb|CCE93603.1| hypothetical protein TDEL_0G02360 [Torulaspora delbrueckii]
Length = 402
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 81/175 (46%), Gaps = 7/175 (4%)
Query: 85 SAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLA 144
S N + E S L N+ + E ++ F+ G + ++++ + N N A
Sbjct: 28 SVVPANAIKGGRETSDKVLYVGNLDTSINEEILKQYFQVGGPIANVKIMVDKNNSNANYA 87
Query: 145 FVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSF 204
FV +A AL L + E +K+N+A ++ V P ATFNLF+ +L+
Sbjct: 88 FVEYFQSHDANIALQTLNGKQIENNVVKINWAFQSQQ-----VSPDE-ATFNLFVGDLNV 141
Query: 205 EARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ + LR F E + V++ S GYGFVSF S++ A+ A+ A QG
Sbjct: 142 DVDDETLRNAF-KEFPTYLQGHVMWDMQTGGSRGYGFVSFGSQEEAQKAMDAMQG 195
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 115 EDIRALFEQHGTVLD--IELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
E +R F++ T L + M + +RG FV+ GS +EA A++ ++ +E GR L+
Sbjct: 146 ETLRNAFKEFPTYLQGHVMWDMQTGG-SRGYGFVSFGSQEEAQKAMDAMQGHELNGRPLR 204
Query: 173 VNYA 176
+N+A
Sbjct: 205 INWA 208
>gi|444321552|ref|XP_004181432.1| hypothetical protein TBLA_0F03780 [Tetrapisispora blattae CBS 6284]
gi|387514476|emb|CCH61913.1| hypothetical protein TBLA_0F03780 [Tetrapisispora blattae CBS 6284]
Length = 577
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 86/171 (50%), Gaps = 11/171 (6%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N+ +T ED LF+ +GT+ + L ++ ++RG FV + ++A A+
Sbjct: 224 TNVYVKNLDLEATEEDFENLFKPYGTITSVALEKDAEGKSRGFGFVDFENHEDAVKAVEA 283
Query: 161 LESYEFEGRTLKVNYAKIK------KKNPFPPVQPKPFATF---NLFIANLSFEARAKDL 211
L E++G+TL V A+ K K + + + A + NLFI NL + L
Sbjct: 284 LNDTEYKGQTLYVGRAQKKYERLQELKKQYQASKLEKLAKYQGINLFIKNLDDSIDDEKL 343
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
+E F G + SA V+ +N +S G+GFV F + + A AI+ +++
Sbjct: 344 KEEFAPFGT-ITSARVMRTENG-KSKGFGFVCFSTPEEATRAITEKNQQIV 392
>gi|157115109|ref|XP_001658116.1| single-stranded DNA-binding protein mssp-1 [Aedes aegypti]
gi|108877020|gb|EAT41245.1| AAEL007091-PA, partial [Aedes aegypti]
Length = 412
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 83/170 (48%), Gaps = 8/170 (4%)
Query: 90 NTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMG 149
NT Q+ E+ SKT L + + +T +D+ + Q+GT++ + ++ K N+ FV
Sbjct: 46 NTPQQTEQLSKTNLYIRGLQQNTTDKDLINMCAQYGTIISTK-AILDKTTNKCYGFVDFE 104
Query: 150 SPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAK 209
SP A A+ L+S + + KV + + P VQ + T NL+IANL +
Sbjct: 105 SPACAEGAVKGLQSKGIQAQMAKVGIWVLHR----PAVQQEQDPT-NLYIANLPLTYKET 159
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
D+ E +S+ V+S I D +S G GF +S++ E I F G
Sbjct: 160 DV-ENLLSKYGQVISTR-ILRDQNAQSKGVGFARMESREKCEQIIQMFNG 207
>gi|224060641|ref|XP_002193452.1| PREDICTED: nucleolin [Taeniopygia guttata]
Length = 692
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 88/180 (48%), Gaps = 14/180 (7%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
E ++E ++T L +N+P+ T +DIR +FE L++ + M+ +RG+A+V +
Sbjct: 361 ENKKERDART-LFLKNLPYRITEDDIREVFE---NALEVRIVMNKDGNSRGMAYVEFKTE 416
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDL 211
EA AL + E EGR + +++ K + + + + L + NLS+ A + L
Sbjct: 417 AEADKALEEKQGTEIEGRAVVIDFTGEKSQQ-----ENQKGESTTLIVNNLSYAATEETL 471
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271
+E F S+ + +N R GY FV F + + A+ A+++ I I L +
Sbjct: 472 QEVFKK-----ASSIRVPQNNQGRPKGYAFVDFATAEDAKEALNSLNNTEIEGRTIRLEF 526
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 92/185 (49%), Gaps = 11/185 (5%)
Query: 91 TEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGS 150
++Q ++ T L+ N+ + +T E ++ +F++ + I + +++ R +G AFV +
Sbjct: 445 SQQENQKGESTTLIVNNLSYAATEETLQEVFKKASS---IRVPQNNQGRPKGYAFVDFAT 501
Query: 151 PDEATAALNNLESYEFEGRTLKVNYA----KIKKKNPFPPVQPKPFATFNLFIANLSFEA 206
++A ALN+L + E EGRT+++ ++ + N + LF+ LS +
Sbjct: 502 AEDAKEALNSLNNTEIEGRTIRLEFSSPSWQKGNTNARGGGGGFGQQSKTLFVRGLSEDT 561
Query: 207 RAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLV 266
+ LRE F EG +SA ++ + S G+GFV F S + A+ A A + I
Sbjct: 562 TEETLRESF--EGS--ISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEIDGNK 617
Query: 267 IALSY 271
+ L +
Sbjct: 618 VTLDF 622
>gi|344231201|gb|EGV63083.1| hypothetical protein CANTEDRAFT_106956 [Candida tenuis ATCC 10573]
Length = 231
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 80/176 (45%), Gaps = 8/176 (4%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAALNNL 161
L + W + ++ FE G V+ + M + ++RG +V S +A AL +
Sbjct: 5 LFVGRLSWNIDDDWLKREFEPSGGVISARVIMERATGKSRGYGYVDFESKADAEKALQDF 64
Query: 162 ESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF------NLFIANLSFEARAKDLREFF 215
+ E +GR + ++ + K + P + K F LFI NLSF A L E F
Sbjct: 65 QGKEIDGRPINLDLSTSKPQTPAKNDRAKKFGDVVSAPSDTLFIGNLSFNATRDKLFEAF 124
Query: 216 ISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271
G +V+S + H + ++ G+G+V + S + A+ A+ A G+ I L Y
Sbjct: 125 GQYG-EVISCRIPTHPDTQQPKGFGYVQYGSIEEAKAALEALNGEYIEGRPCRLDY 179
Score = 40.8 bits (94), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRN-RGLAFVTMGSPDEATAALNNL 161
L N+ + +T + + F Q+G V+ + H + +G +V GS +EA AAL L
Sbjct: 106 LFIGNLSFNATRDKLFEAFGQYGEVISCRIPTHPDTQQPKGFGYVQYGSIEEAKAALEAL 165
Query: 162 ESYEFEGRTLKVNYA 176
EGR +++Y+
Sbjct: 166 NGEYIEGRPCRLDYS 180
>gi|170060137|ref|XP_001865670.1| heterogeneous nuclear ribonucleoprotein 27C [Culex
quinquefasciatus]
gi|167878677|gb|EDS42060.1| heterogeneous nuclear ribonucleoprotein 27C [Culex
quinquefasciatus]
Length = 402
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 81/162 (50%), Gaps = 9/162 (5%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSPDEA 154
+++ K +L + W +T E+++ F ++G V+D + + + R+RG FVT P+
Sbjct: 14 DDHEKGKLFVGGLSWETTQENLQRYFGRYGEVIDCVVMKNNETGRSRGFGFVTFADPENV 73
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF-NLFIANLSFEARAKDLRE 213
AL N + +GRT+ K NP +PK + +F+ L DLR
Sbjct: 74 ERALEN-GPHTLDGRTIDP-----KPCNPRSLHKPKRTGGYPKVFLGGLPPNITETDLRS 127
Query: 214 FFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
FF G +V+ +++ ++S G+GF+SF+++ E A +
Sbjct: 128 FFSRYG-NVMEVVIMYDQEKKKSRGFGFLSFENEAAVERATA 168
>gi|357154719|ref|XP_003576878.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 653
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 85/176 (48%), Gaps = 13/176 (7%)
Query: 106 QNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYE 165
+N+ T+T +D+R +F + GT+ + + R++ FV SPDEA A+ +L +
Sbjct: 218 KNLSETTTEDDLREIFGKFGTITSVVVMREGDGRSKCFGFVNFESPDEAALAVQDLNGKK 277
Query: 166 FE------GRTLKVNYAKIKKKNPFPP---VQPKPFATFNLFIANLSFEARAKDLREFFI 216
F+ GR K + +++ K F + NL++ NL + LRE F
Sbjct: 278 FDDKEWYVGRAQKKSEREMELKEKFEKNLQETADKYQNTNLYLKNLDDTVDDEKLRELFA 337
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIALS 270
G +++ + D+ S G GFV+FKS + A A++ K++ L +AL+
Sbjct: 338 EFG--AITSCKVMRDSNGASRGSGFVAFKSAEDASRALAEMNNKMVGSKPLYVALA 391
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 65/144 (45%), Gaps = 10/144 (6%)
Query: 120 LFEQHGTVLDIELSMHSKNRNR-GLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178
+F Q G V+ + + R G A+V +P +A AL L GR +++ Y+
Sbjct: 53 VFAQIGGVVSVRVCRDVTTRKSLGYAYVNYNTPADAARALEMLNFTPINGRPIRIMYS-- 110
Query: 179 KKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAG 238
N P + + T N+FI NL K L + F G +++S +V D S G
Sbjct: 111 ---NRDPSL--RKSGTANIFIKNLDKSIDNKALYDTFCVFG-NILSCKVA-TDASGESKG 163
Query: 239 YGFVSFKSKKVAETAISAFQGKVI 262
YGFV ++ + A AI G ++
Sbjct: 164 YGFVQYERDEAAHAAIEKLNGMLM 187
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 66/150 (44%), Gaps = 12/150 (8%)
Query: 116 DIRALFEQH---GTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL++ G +L +++ + ++G FV + A AA+ L + +
Sbjct: 134 DNKALYDTFCVFGNILSCKVATDASGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVY 193
Query: 173 VN--YAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFH 230
V K ++ N P N+F+ NLS DLRE F G +++ V+
Sbjct: 194 VGPFIRKQERDN-----SPGNVKFNNVFVKNLSETTTEDDLREIFGKFG--TITSVVVMR 246
Query: 231 DNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
+ RS +GFV+F+S A A+ GK
Sbjct: 247 EGDGRSKCFGFVNFESPDEAALAVQDLNGK 276
>gi|410083501|ref|XP_003959328.1| hypothetical protein KAFR_0J01260 [Kazachstania africana CBS 2517]
gi|372465919|emb|CCF60193.1| hypothetical protein KAFR_0J01260 [Kazachstania africana CBS 2517]
Length = 365
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 83/176 (47%), Gaps = 9/176 (5%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATA 156
E S L N+ + + ++ F+ G ++D+++ + KN + AF+ + +A
Sbjct: 27 ETSDKVLYIGNLDKSINEDALKQYFQVAGQIVDVKVMVDKKNNHVNYAFIEYSTNHDANV 86
Query: 157 ALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFI 216
AL L + E + +K+N+A + N +FNLFI +L+ L F
Sbjct: 87 ALQTLNGIQIENKNIKINWAFQSQTN------LNDDTSFNLFIGDLNVNVDDTTLANAFK 140
Query: 217 S-EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271
S G+ + A V++ RS GYGFVSF + + A+ A+ QG I I +++
Sbjct: 141 SCPGF--LQAHVMWDMQTSRSRGYGFVSFDTHENAQAAMDQMQGHEINGRAIRINW 194
Score = 38.1 bits (87), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 26/38 (68%)
Query: 139 RNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176
R+RG FV+ + + A AA++ ++ +E GR +++N+A
Sbjct: 158 RSRGYGFVSFDTHENAQAAMDQMQGHEINGRAIRINWA 195
>gi|17554332|ref|NP_497799.1| Protein MSI-1 [Caenorhabditis elegans]
gi|10047307|dbj|BAB13470.1| neural RNA-binding protein MSI-1 [Caenorhabditis elegans]
gi|18376536|emb|CAA84667.2| Protein MSI-1 [Caenorhabditis elegans]
Length = 320
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 88/196 (44%), Gaps = 19/196 (9%)
Query: 79 PFVDSSSAAAVNTEQREEEYSK---TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH 135
P VD A +N + + + ++ + W +T E++R F + G V + +
Sbjct: 20 PPVDGHEEARLNADSDDGSHGSQDPGKMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRD 79
Query: 136 -SKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPP-VQPKPFA 193
+ R RG F+T P LNN E +E +G+ KI K FP Q K
Sbjct: 80 PATKRARGFGFITFVDPSSVDKVLNNRE-HELDGK-------KIDPKVAFPKRTQAKLVT 131
Query: 194 -TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKS----KK 248
T +FI LS + +D++++F + G V A ++F +R G+GFV+F S K
Sbjct: 132 KTKKVFIGGLSATSTLEDMKQYFETYG-KVEDAMLMFDKATQRHRGFGFVTFDSDEVADK 190
Query: 249 VAETAISAFQGKVIMC 264
V E GK++ C
Sbjct: 191 VCEIHFHEINGKMVEC 206
>gi|255726450|ref|XP_002548151.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240134075|gb|EER33630.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 472
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 90/199 (45%), Gaps = 5/199 (2%)
Query: 74 ATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELS 133
++T P +SS A TE E S T L N+P +++ E ++ LF G +
Sbjct: 56 SSTSTPPEESSLTPASATE-GGREISNTILYVGNLPKSASEEMVKDLFSVGGNPIKTIKL 114
Query: 134 MHSKNRNR-GLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPF 192
++ KN+ AF+ S D A ALN L + +KVN+A +P
Sbjct: 115 LNDKNKAGFNYAFIEYDSNDTADMALNTLNGRVIDESEIKVNWAYQSAAIASTLNSEEPL 174
Query: 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAET 252
FN+F+ +LS E + LR F G + A V++ RS GYGFV+F + AE
Sbjct: 175 --FNIFVGDLSPEVNDEGLRNAFSKFG-SLKQAHVMWDMQTSRSRGYGFVTFSEQADAEL 231
Query: 253 AISAFQGKVIMCLVIALSY 271
A+ G+ + I ++
Sbjct: 232 ALQTMNGEWLGGRAIRCNW 250
>gi|125599171|gb|EAZ38747.1| hypothetical protein OsJ_23149 [Oryza sativa Japonica Group]
Length = 220
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 80/157 (50%), Gaps = 13/157 (8%)
Query: 113 THEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAALNNLESYEFEGRT 170
T +I F + G V ++++ ++ K +R+RG AFVTM + +EA A+ GRT
Sbjct: 2 TSGEISQTFSEAGRVDNVQI-IYDKVTDRSRGFAFVTMATAEEAATAIQMFNGALLGGRT 60
Query: 171 LKVNYAKIKKKNPFPPVQP-------KPFATFNLFIANLSFEARAKDLREFFISEGW-DV 222
+VNY ++ + + TF ++ NL + RA LR F EG +
Sbjct: 61 ARVNYPEVPRGGERAVGSAAATRENRRDDGTFKIYAGNLGWGVRADALRAAF--EGQPGL 118
Query: 223 VSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ A VIF + RS G+GFVSF++ + A+ A+ A G
Sbjct: 119 LDARVIFERDSGRSRGFGFVSFRTAEDAQAALEALDG 155
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 6/101 (5%)
Query: 84 SSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRG 142
SAAA +R++ K + A N+ W + +RA FE +LD + R+RG
Sbjct: 77 GSAAATRENRRDDGTFK--IYAGNLGWGVRADALRAAFEGQPGLLDARVIFERDSGRSRG 134
Query: 143 LAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNP 183
FV+ + ++A AAL L+ E EGR L+++ A ++NP
Sbjct: 135 FGFVSFRTAEDAQAALEALDGVELEGRPLRLSMA---EQNP 172
>gi|375152208|gb|AFA36562.1| plastid-specific 30S ribosomal protein 2, partial [Lolium perenne]
Length = 112
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 55/75 (73%), Gaps = 4/75 (5%)
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
L+++NL+++AR+ +L+EFF ++ VSA V+F D ++SAGYGFVSF +K+ AE+A+S
Sbjct: 2 LYVSNLAWKARSNNLKEFFAQ--YNPVSANVVFDD--KKSAGYGFVSFGTKEEAESALSE 57
Query: 257 FQGKVIMCLVIALSY 271
+GK +M + L +
Sbjct: 58 LEGKELMGRPVLLRW 72
>gi|307194503|gb|EFN76795.1| ELAV-like protein 2 [Harpegnathos saltator]
Length = 349
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 86/189 (45%), Gaps = 13/189 (6%)
Query: 74 ATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELS 133
A D V + + + Q +E SKT L+ +P + T ++IR+LF G V +L
Sbjct: 2 ANGMDTVVQQNGGSTLG--QTSQEESKTNLIVNYLPQSMTQDEIRSLFSSIGEVESCKLI 59
Query: 134 MHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPF 192
++ G FV P++A A++ L + +T+KV+YA+ P +
Sbjct: 60 RDKLSGQSLGYGFVNYHRPEDAEKAISTLNGLRLQNKTIKVSYAR-------PSSEAIKG 112
Query: 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAET 252
A NL+++ L +DL F G ++++ ++ + S G GF+ F + AE
Sbjct: 113 A--NLYVSGLPKNMAQQDLENLFSPYG-RIITSRILCDNITGLSKGVGFIRFDQRVEAER 169
Query: 253 AISAFQGKV 261
AI G +
Sbjct: 170 AIQELNGTI 178
>gi|388582392|gb|EIM22697.1| RNA-binding domain-containing protein [Wallemia sebi CBS 633.66]
Length = 326
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 77/177 (43%), Gaps = 18/177 (10%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T+L N+P+ +D++ LF Q G V+ ++ + +++G V+ S ++A A+
Sbjct: 126 TQLFVGNLPFQVGWQDLKDLFRQAGHVVRADIQLFPDGKSKGNGIVSFSSREDANNAIEL 185
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPVQPKPF----------------ATFNLFIANLSF 204
YEF GR ++V K +P P P F + NL +
Sbjct: 186 YNGYEFYGRPIEVREDKF-ANSPRPSRTPYQFNRKAPQGPAPVPAAAAPNPQIVSKNLPW 244
Query: 205 EARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKV 261
+DL E F + G DV AE++ +RS G G V F S A AI F G V
Sbjct: 245 STSNEDLVELFETTG-DVKKAEILIDSRTQRSRGVGIVEFFSTAAASVAIEKFNGYV 300
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 5/71 (7%)
Query: 197 LFIANLSFEARAKDLREFFI--SEG--WDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAET 252
+++ NL++E +++DL+ FF +EG +V SAEV+ N S G G V F S + A+
Sbjct: 12 VYVGNLNYEVKSEDLKSFFQDNAEGQVLEVASAEVLITPNG-LSKGCGIVEFTSPESAQI 70
Query: 253 AISAFQGKVIM 263
AI +F K ++
Sbjct: 71 AIESFSDKSLL 81
>gi|356502327|ref|XP_003519971.1| PREDICTED: polyadenylate-binding protein 5-like [Glycine max]
Length = 616
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 80/172 (46%), Gaps = 12/172 (6%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N T T ED+ LF +GT+ + + ++R FV SPD A AA+
Sbjct: 184 TNVYVKNFSETYTDEDLEQLFSTYGTITSAVVMKDTDGKSRCFGFVNFESPDSAVAAVER 243
Query: 161 LESYEF-EGRTLKVNYAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKD 210
L + + L V A+ K K F + + + + NL++ NL +
Sbjct: 244 LNGTTVNDDKVLYVGRAQRKAEREAELKARFELERIRKYEKYHGTNLYVKNLDYNINDDK 303
Query: 211 LREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
L+E F SE + S +V+ N RS GYGFV+F + + A A+ GK+I
Sbjct: 304 LKELF-SEFGTITSCKVMLEPN-GRSKGYGFVAFSAPRNANRALHEMNGKMI 353
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 75/143 (52%), Gaps = 9/143 (6%)
Query: 120 LFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179
LF + G + I + NR+ G A+V +P +A A+ +L G++++V ++
Sbjct: 25 LFARVGPIFSIRVCRDETNRSLGYAYVNFVNPQDAANAMEHLNFTPLNGKSIRVMFS--- 81
Query: 180 KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
N P ++ +A N+FI NL K L + F + G+ V+S++V D+ +S GY
Sbjct: 82 --NRDPSIRKSGYA--NVFIKNLDISIDNKTLHDTFAAFGF-VLSSKVAV-DSIGQSKGY 135
Query: 240 GFVSFKSKKVAETAISAFQGKVI 262
GFV F +++ A+ AI G +I
Sbjct: 136 GFVQFDNEESAQNAIKELNGMLI 158
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 42/86 (48%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEAT 155
E+Y T L +N+ + + ++ LF + GT+ ++ + R++G FV +P A
Sbjct: 283 EKYHGTNLYVKNLDYNINDDKLKELFSEFGTITSCKVMLEPNGRSKGYGFVAFSAPRNAN 342
Query: 156 AALNNLESYEFEGRTLKVNYAKIKKK 181
AL+ + R L V A+ K++
Sbjct: 343 RALHEMNGKMIGRRPLYVAVAQRKEE 368
>gi|91095037|ref|XP_975975.1| PREDICTED: similar to poly A binding protein isoform 4 [Tribolium
castaneum]
gi|270014772|gb|EFA11220.1| hypothetical protein TcasGA2_TC005185 [Tribolium castaneum]
Length = 607
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 95/196 (48%), Gaps = 20/196 (10%)
Query: 92 EQREEEYSK-----TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFV 146
++RE+E + T + +N T E +R +FE++G + ++ +++G FV
Sbjct: 178 KEREKELGEKAKLFTNVYVKNFGEDLTEEQLRTMFEKYGKITSYKIMSKDDGKSKGFGFV 237
Query: 147 TMGSPDEATAALNNLESYE-FEGRTLKVNYAKIKK------KNPFPPVQPKPFATF---N 196
SP+ A A+ L E +G+ L V A+ K K F ++ + + N
Sbjct: 238 AFESPEAAETAVEALNGKEIIDGKPLYVGRAQKKAERQQELKRRFEALKMERLNRYQGVN 297
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
L++ NL + LR+ F G + SA+V+ DN RS G+GFV F S + A A++
Sbjct: 298 LYVKNLDDTIDDERLRKEFSPFGT-ITSAKVMMEDN--RSKGFGFVCFSSPEEATKAVTE 354
Query: 257 FQGKVIMC--LVIALS 270
G+++ L +AL+
Sbjct: 355 MNGRIVGSKPLYVALA 370
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 66/143 (46%), Gaps = 3/143 (2%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L +++ ++G FV + + A ++ + G+ + V I +
Sbjct: 119 FSAFGNILSCKVAQDENGTSKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRF-IPR 177
Query: 181 KNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYG 240
K + K N+++ N + + LR F E + +++ I + +S G+G
Sbjct: 178 KEREKELGEKAKLFTNVYVKNFGEDLTEEQLRTMF--EKYGKITSYKIMSKDDGKSKGFG 235
Query: 241 FVSFKSKKVAETAISAFQGKVIM 263
FV+F+S + AETA+ A GK I+
Sbjct: 236 FVAFESPEAAETAVEALNGKEII 258
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 75/155 (48%), Gaps = 15/155 (9%)
Query: 114 HEDIR--ALFEQ---HGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNNLESYEFE 167
H DI LFE+ G VL I + R+ G A+V P +A AL+ + +
Sbjct: 19 HTDITEAMLFEKFSTAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALDTMNFDLIK 78
Query: 168 GRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEV 227
GR +++ ++ +++P + N+FI NL K + + F + G +++S +V
Sbjct: 79 GRPIRIMWS---QRDP----SLRKSGVGNVFIKNLDRSIDNKAMYDTFSAFG-NILSCKV 130
Query: 228 IFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
+N S GYGFV F++++ A +I G ++
Sbjct: 131 AQDENG-TSKGYGFVHFETEEAANKSIEKVNGMLL 164
Score = 40.4 bits (93), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPD 152
+R Y L +N+ T E +R F GT+ ++ M NR++G FV SP+
Sbjct: 288 ERLNRYQGVNLYVKNLDDTIDDERLRKEFSPFGTITSAKVMMED-NRSKGFGFVCFSSPE 346
Query: 153 EATAALNNLESYEFEGRTLKVNYAKIKK 180
EAT A+ + + L V A+ K+
Sbjct: 347 EATKAVTEMNGRIVGSKPLYVALAQRKE 374
>gi|353241625|emb|CCA73428.1| related to NSR1-nuclear localization sequence binding protein
[Piriformospora indica DSM 11827]
Length = 657
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 80/169 (47%), Gaps = 10/169 (5%)
Query: 110 WTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYEFEG 168
W E +++ FE G V+ + M + R++G +V+ +P+ A A+ + E +G
Sbjct: 400 WNVDDEWLKSEFEACGEVVRASVQMDRQTGRSKGFGYVSFSTPEAAEKAIAEMNGKEIDG 459
Query: 169 RTLKVNYAKIKKKNPFPPVQPKPFA------TFNLFIANLSFEARAKDLREFFISEGWDV 222
R + VN A K P P + K F + LF+ N+SF A L E F G D+
Sbjct: 460 RAVNVNAA--TPKTPNPAGRAKQFGDTVSAESKVLFVGNVSFNANEDMLWETFGEHG-DI 516
Query: 223 VSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271
VS + + G+G+V F S + A++A +A GK I I L +
Sbjct: 517 VSVRLPTDRETGQMKGFGYVEFTSVENAKSAFNALNGKDIAGRNIRLDF 565
>gi|213409529|ref|XP_002175535.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
gi|212003582|gb|EEB09242.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
Length = 621
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 92/189 (48%), Gaps = 29/189 (15%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N+ +T E+ LFE++G + + L+ + + RG AFV + D A A++
Sbjct: 250 TNVYVKNLDLDTTEEEFTKLFEKYGKITSLSLAKDNAGKFRGFAFVNFATHDSAQQAVDE 309
Query: 161 LESYEFEGRTLKVNYA-----------------KIKKKNPFPPVQPKPFATFNLFIANLS 203
L +E++G+ L V A K++K N + V NLF+ NL
Sbjct: 310 LNDFEYKGKKLYVGRAQKKHERQEELRKQYEQMKLEKINKYQGV--------NLFVKNLQ 361
Query: 204 FEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
E + L+ F + G + SA+V+ +N +S G+GFV + + + A AI+ +++
Sbjct: 362 DEIDDERLKSEFSAFGT-ITSAKVMTDEN-NKSKGFGFVCYSNPEEATKAIAEMNQRMLA 419
Query: 264 C--LVIALS 270
L +AL+
Sbjct: 420 GKPLYVALA 428
Score = 40.4 bits (93), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 65/144 (45%), Gaps = 10/144 (6%)
Query: 120 LFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178
LF G V I + + R+ G A+V + ++ AL+ L +GR ++ +++
Sbjct: 88 LFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWSQ- 146
Query: 179 KKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAG 238
++P + T N+FI NL K L + F + G ++S +V D S G
Sbjct: 147 --RDP----SLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGK-ILSCKVAV-DELGNSKG 198
Query: 239 YGFVSFKSKKVAETAISAFQGKVI 262
YGFV F S A AI G ++
Sbjct: 199 YGFVHFDSVDSANAAIEHVNGMLL 222
Score = 37.7 bits (86), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 40/84 (47%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATA 156
+Y L +N+ E +++ F GT+ ++ N+++G FV +P+EAT
Sbjct: 349 KYQGVNLFVKNLQDEIDDERLKSEFSAFGTITSAKVMTDENNKSKGFGFVCYSNPEEATK 408
Query: 157 ALNNLESYEFEGRTLKVNYAKIKK 180
A+ + G+ L V A+ K+
Sbjct: 409 AIAEMNQRMLAGKPLYVALAQRKE 432
>gi|410898224|ref|XP_003962598.1| PREDICTED: polyadenylate-binding protein 4-like [Takifugu rubripes]
Length = 653
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 86/167 (51%), Gaps = 14/167 (8%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF+++G L +++ M ++RG FV+ ++A A+ ++ E G+T+ V
Sbjct: 205 ERLKELFDKYGKTLSVKVMMDPTGKSRGFGFVSYEKHEDANKAVEDMNGTELNGKTVFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKNERQAELKRKFEMLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIALS 270
+V+ + RS G+GFV F S + A A++ G+++ L +AL+
Sbjct: 324 KVMLEEG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Score = 37.0 bits (84), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ ++ M + R++G FV SP
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-MLEEGRSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|19526272|gb|AAL89666.1|AF411956_7 polyA-binding protein [Takifugu rubripes]
Length = 623
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 86/167 (51%), Gaps = 14/167 (8%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF+++G L +++ M ++RG FV+ ++A A+ ++ E G+T+ V
Sbjct: 205 ERLKELFDKYGKTLSVKVMMDPTGKSRGFGFVSYEKHEDANKAVEDMNGTELNGKTVFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKNERQAELKRKFEMLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIALS 270
+V+ + RS G+GFV F S + A A++ G+++ L +AL+
Sbjct: 324 KVMLEEG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
>gi|384251873|gb|EIE25350.1| polyadenylate binding protein [Coccomyxa subellipsoidea C-169]
Length = 681
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 90/188 (47%), Gaps = 15/188 (7%)
Query: 94 REEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDE 153
+E+ Y T + +N+ T E++ +F +HG V + +++G F+ +
Sbjct: 208 KEQHY--TNVFVKNLSENLTDEEVEKMFNEHGMVTSFAIMKDEAGKSKGFGFINFEDAEG 265
Query: 154 ATAALNNLESYEFEGRTLKVNYAKIKK------KNPFPPVQPKPFATF---NLFIANLSF 204
A AA+ L E +G+ L A+ K K F V+ + A + NL++ NL
Sbjct: 266 AHAAVTALNGKEIDGKELYCGRAQKKAEREAELKQKFDEVRQERIAKYQGMNLYVKNLVD 325
Query: 205 EARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC 264
E LR F G + SA+V+ D+ +S G+GFV + S + A A++ GK+++
Sbjct: 326 EVDDDQLRAEFAPHGT-ITSAKVM-KDSAGKSKGFGFVCYSSPEEATRAVTEMNGKMLLG 383
Query: 265 --LVIALS 270
+ +AL+
Sbjct: 384 KPMYVALA 391
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 71/150 (47%), Gaps = 9/150 (6%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F GT+L +++ ++G FV + A A+ + EG+ K
Sbjct: 135 DNKALHDTFTAFGTILSCKVATDLAGNSKGYGFVHYEKEEAAQLAIEKVNGMLLEGK--K 192
Query: 173 VNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDN 232
V K+ P + + + N+F+ NLS +++ + F G +V++ I D
Sbjct: 193 VFVGPFLKRTERPVDKEQHYT--NVFVKNLSENLTDEEVEKMFNEHG--MVTSFAIMKDE 248
Query: 233 PRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
+S G+GF++F+ + A A++A GK I
Sbjct: 249 AGKSKGFGFINFEDAEGAHAAVTALNGKEI 278
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 44/89 (49%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R +Y L +N+ + +RA F HGT+ ++ S +++G FV SP
Sbjct: 307 QERIAKYQGMNLYVKNLVDEVDDDQLRAEFAPHGTITSAKVMKDSAGKSKGFGFVCYSSP 366
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKK 180
+EAT A+ + G+ + V A+ ++
Sbjct: 367 EEATRAVTEMNGKMLLGKPMYVALAQRRE 395
>gi|383862671|ref|XP_003706807.1| PREDICTED: polyadenylate-binding protein 1-like isoform 3
[Megachile rotundata]
Length = 601
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 85/170 (50%), Gaps = 15/170 (8%)
Query: 113 THEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEF-EGRTL 171
T + ++ +FE++GT+ ++ + ++RG FV PD A A+ L E EG+ +
Sbjct: 175 TDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCM 234
Query: 172 KVNYAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDV 222
V A+ K K F ++ + + + NL++ NL + LR F G +
Sbjct: 235 YVGRAQKKAERQQELKRKFEQLKLERLSRYQGVNLYVKNLDDSINDERLRREFAPFGT-I 293
Query: 223 VSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIALS 270
SA+V+ D RS G+GFV F + + A A++ G++I+ L +AL+
Sbjct: 294 TSAKVMMEDG--RSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALA 341
Score = 43.9 bits (102), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 74/155 (47%), Gaps = 15/155 (9%)
Query: 114 HEDIR--ALFEQ---HGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFE 167
H DI LFE+ G VL I + R+ G A+V P +A AL+ + +
Sbjct: 19 HADITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDMIK 78
Query: 168 GRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEV 227
GR +++ +++ ++P + N+FI NL K + + F + G +++S +V
Sbjct: 79 GRPIRIMWSQ---RDP----SLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFG-NILSCKV 130
Query: 228 IFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
D S GYGFV F++++ A +I G ++
Sbjct: 131 A-QDESGVSKGYGFVHFETEEAANKSIDKVNGMLL 164
>gi|295789540|pdb|3MD3|A Chain A, Crystal Structure Of The First Two Rrm Domains Of Yeast
Poly Binding Protein (Pub1)
Length = 166
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 74/158 (46%), Gaps = 8/158 (5%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLE 162
L N+ T + ++ F+ G + +I++ + N+N AFV +A AL L
Sbjct: 3 LYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLN 62
Query: 163 SYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDV 222
+ E +K+N+A F Q TFNLF+ +L+ + LR F +
Sbjct: 63 GKQIENNIVKINWA-------FQSQQSSSDDTFNLFVGDLNVNVDDETLRNAF-KDFPSY 114
Query: 223 VSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
+S V++ S GYGFVSF S+ A+ A+ + QG+
Sbjct: 115 LSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQ 152
>gi|328850756|gb|EGF99917.1| hypothetical protein MELLADRAFT_118186 [Melampsora larici-populina
98AG31]
Length = 667
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 77/161 (47%), Gaps = 11/161 (6%)
Query: 110 WTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEG 168
W + ++ FE+ G V+ ++ R++G +V SP++A A+ + E +G
Sbjct: 410 WNVDDDWLKKEFEKFGEVISARVITERGTERSKGFGYVDFASPEDARKAVEAMAGTEIDG 469
Query: 169 RTLKVNYAKIKKKNPFPPVQPKPFA-------TFNLFIANLSFEARAKDLREFFISEGWD 221
RT+ V+++ K + PP + + F T LFI NL F A + E F SE D
Sbjct: 470 RTINVDFSAPKPER--PPQEKRSFGQEELSAPTTTLFIGNLPFSATQDSVYEAF-SEYGD 526
Query: 222 VVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
+ S + R G+G+V F +++ A A++ +G I
Sbjct: 527 INSVRLPTDPETERIKGFGYVEFATQEAATAAVNVGRGDGI 567
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 196 NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
NLF+ LS+ L++ F G +V+SA VI RS G+G+V F S + A A+
Sbjct: 402 NLFVGGLSWNVDDDWLKKEFEKFG-EVISARVITERGTERSKGFGYVDFASPEDARKAVE 460
Query: 256 AFQGKVIMCLVIALSY 271
A G I I + +
Sbjct: 461 AMAGTEIDGRTINVDF 476
>gi|118487510|gb|ABK95582.1| unknown [Populus trichocarpa]
Length = 198
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 84/159 (52%), Gaps = 10/159 (6%)
Query: 113 THEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTL 171
T ++ +FE+ G V E + +R+RG FVTM S +EA A+ + GRTL
Sbjct: 2 TSSELAEVFEEAGRVFGAEVICDRVTDRSRGFGFVTMESVEEAKEAIRMFNGSQVGGRTL 61
Query: 172 KVNYAKIKKKNPFPPVQPKPFATFNLFI--------ANLSFEARAKDLREFFISEGWDVV 223
+VN+ ++ + ++P+ + + FI NL + ++ L + F ++ ++
Sbjct: 62 RVNFPEVPRGGEREVMEPRIRSGYKGFIDSEHKIYAGNLGWRLTSEGLGDAFANQ-PGLL 120
Query: 224 SAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
SA+VI+ + RS G+GFVSF S + AE A+ A G+ +
Sbjct: 121 SAKVIYERDTGRSRGFGFVSFDSAENAEAALEAMNGEEV 159
>gi|356503942|ref|XP_003520758.1| PREDICTED: flowering time control protein FCA-like [Glycine max]
Length = 496
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 83/174 (47%), Gaps = 31/174 (17%)
Query: 108 VPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNR-GLAFVTMGSPDEATAA---LNNLES 163
VP T+T ++IR +FE+HGT+++I L H K R G FV + DEA A LNN +
Sbjct: 80 VPRTATEDEIRPVFEEHGTIVEIVLLKHKKTGTRQGSCFVKYATFDEADRAIKVLNNKYT 139
Query: 164 YEFEGRTLKVNYA--------------KIKKKNPFPPVQPKPFATFNLFIANLSFEARAK 209
+ E + V +A ++KK+P V K +F+++++ EA K
Sbjct: 140 FAGESYPVVVKFADRELERLGVRGLCRNMEKKDPLEEVADK------VFVSSINKEATNK 193
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
D+ E F G E IF + + GY FV F ++++A AI M
Sbjct: 194 DIEEIFSPYG----HVEDIFF---KSTHGYAFVKFSNREMALAAIKGLNKTFTM 240
>gi|154308771|ref|XP_001553721.1| hypothetical protein BC1G_07808 [Botryotinia fuckeliana B05.10]
gi|347831781|emb|CCD47478.1| hypothetical protein [Botryotinia fuckeliana]
Length = 381
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 75/169 (44%), Gaps = 14/169 (8%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEF 166
N+ + ED++ FE GT+ D+ ++ ++ ++G A++ ATAA+ F
Sbjct: 171 NLLFDINEEDLKKEFEHFGTITDVRVTRDARGLSKGFAYIDFADVQSATAAIEAKNQTIF 230
Query: 167 EGRTLKVNYA----KIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDV 222
EGR L VNY KI+ +N PP + LFI NL+FE DL F E +V
Sbjct: 231 EGRRLVVNYINQTPKIRDQN--PPSKC-------LFIGNLAFEMSDADLNSLF-REVRNV 280
Query: 223 VSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271
+ V + G+ F A A+ QGK + + + Y
Sbjct: 281 IDVRVAIDRRTGQPRGFAHADFVDVDSAMKALEQLQGKEVFNRRLRVDY 329
>gi|344304396|gb|EGW34628.1| hypothetical protein SPAPADRAFT_57674 [Spathaspora passalidarum
NRRL Y-27907]
Length = 414
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 79/176 (44%), Gaps = 8/176 (4%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAALNNL 161
L + W E ++ FE G V+ + M S ++RG +V + D A AL +
Sbjct: 177 LFVGRLSWNIDDEWLKREFEHIGGVIGARVIMERSTGKSRGYGYVDFDNKDSAEKALVEM 236
Query: 162 ESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA------TFNLFIANLSFEARAKDLREFF 215
+ E +GR + ++ + K + K F + LFI NLSF A+ +L E F
Sbjct: 237 QGKEIDGRPINLDMSTGKPHASKSNDRAKQFGDTPSAPSDTLFIGNLSFNAQRDNLFEIF 296
Query: 216 ISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271
G V+S + H + ++ G+G+V F S A+ A+ A G+ I L +
Sbjct: 297 GQHGT-VISCRIPTHPDTQQPKGFGYVQFSSVDEAKAALEALNGEYIEGRACRLDF 351
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRN-RGLAFVTMGSPDEATAALNNL 161
L N+ + + +++ +F QHGTV+ + H + +G +V S DEA AAL L
Sbjct: 278 LFIGNLSFNAQRDNLFEIFGQHGTVISCRIPTHPDTQQPKGFGYVQFSSVDEAKAALEAL 337
Query: 162 ESYEFEGRTLKVNYA 176
EGR +++++
Sbjct: 338 NGEYIEGRACRLDFS 352
>gi|347964852|ref|XP_309157.5| AGAP000965-PA [Anopheles gambiae str. PEST]
gi|333466508|gb|EAA04954.5| AGAP000965-PA [Anopheles gambiae str. PEST]
Length = 340
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 76/165 (46%), Gaps = 11/165 (6%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEA 154
+E SKT L+ +P T T E++++LF G V +L ++ G FV P++A
Sbjct: 22 QEDSKTNLIVNYLPQTMTQEEVKSLFSSIGDVESCKLIRDKVTGQSLGYGFVNYHRPEDA 81
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
A+N + +T+KV++A+ NL+++ LS +DL
Sbjct: 82 EKAINTFNGLRLQNKTIKVSFARPSS---------DAIKGANLYVSGLSKSMTQQDLENL 132
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
F + G ++++ ++ + S G GF+ F + AE AI G
Sbjct: 133 FNAYG-QIITSRILCDNITGLSKGVGFIRFDQRSEAERAIQQLNG 176
>gi|307168947|gb|EFN61833.1| ELAV-like protein 4 [Camponotus floridanus]
Length = 466
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 83/203 (40%), Gaps = 28/203 (13%)
Query: 74 ATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELS 133
A D V + + + Q +E SKT L+ +P + T ++IR+LF G V +L
Sbjct: 3 ANGMDTVVQQNGGSTLG--QTSQEESKTNLIVNYLPQSMTQDEIRSLFSSIGEVESCKLI 60
Query: 134 MHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPF 192
++ G FV P++A A+N L + +T+KV+YA+ +
Sbjct: 61 RDKLSGQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSS---------EAI 111
Query: 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDN--------------PRRSAG 238
NL+++ L +DL F G + S I DN P S G
Sbjct: 112 KGANLYVSGLPKNMAQQDLENLFSPYGRIITSR--ILCDNITVRQFVTGGGDNLPGLSKG 169
Query: 239 YGFVSFKSKKVAETAISAFQGKV 261
GF+ F + AE AI G +
Sbjct: 170 VGFIRFDQRVEAERAIQELNGTI 192
>gi|345489601|ref|XP_001600266.2| PREDICTED: heterogeneous nuclear ribonucleoprotein 27C-like isoform
1 [Nasonia vitripennis]
Length = 376
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 80/169 (47%), Gaps = 11/169 (6%)
Query: 89 VNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVT 147
V E ++E K +L + W +T E+++ F ++G V+D + +S+ R+RG FVT
Sbjct: 3 VKNEMDDDE--KGKLFVGGLSWETTQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVT 60
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF-NLFIANLSFEA 206
P L N ++ +GRT+ K NP +PK F +F+ L
Sbjct: 61 FSDPSNVGLVLQN-GPHQLDGRTIDP-----KPCNPRTLQKPKRSGGFPKVFLGGLPSNV 114
Query: 207 RAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
DLR FF G V+ +++ ++S G+GF+SF+ + + +
Sbjct: 115 TETDLRSFFQRFG-KVMEVVIMYDQEKKKSRGFGFLSFEDEDAVDRCVG 162
>gi|350425139|ref|XP_003494024.1| PREDICTED: ELAV-like protein 2-like [Bombus impatiens]
Length = 371
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 83/203 (40%), Gaps = 28/203 (13%)
Query: 74 ATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELS 133
A D V + + + +EE SKT L+ +P + T ++IR+LF G V +L
Sbjct: 3 ANGMDTVVQQNGGSTLGQASQEE--SKTNLIVNYLPQSMTQDEIRSLFASIGEVESCKLI 60
Query: 134 MHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPF 192
++ G FV P++A A+N L + +T+KV+YA+ +
Sbjct: 61 RDKLTGQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSS---------EAI 111
Query: 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDN--------------PRRSAG 238
NL+++ L +DL F G + S I DN P S G
Sbjct: 112 KGANLYVSGLPKNMTQQDLENLFNPYGRIITSR--ILCDNITVRQFVTGGGDYLPGLSKG 169
Query: 239 YGFVSFKSKKVAETAISAFQGKV 261
GF+ F + AE AI G V
Sbjct: 170 VGFIRFDQRVEAERAIQELNGTV 192
>gi|301615885|ref|XP_002937390.1| PREDICTED: nucleolin [Xenopus (Silurana) tropicalis]
Length = 705
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 87/183 (47%), Gaps = 13/183 (7%)
Query: 90 NTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMG 149
N E ++E S+T L +N+P+++T E+++ +FE DI + N+G+A+V
Sbjct: 374 NAENKKERDSRT-LFVKNIPYSTTAEELQEIFE---NAKDIRIPTGKDGANKGIAYVEFS 429
Query: 150 SPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFP-PVQPKPFATFNLFIANLSFEARA 208
+ EAT AL + E EGR++ V++ K +N VQ L + NLS+ A
Sbjct: 430 NETEATKALEEKQGAEIEGRSIFVDFTGEKSQNSGSRRVQGGDSKV--LVVNNLSYSATE 487
Query: 209 KDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIA 268
LRE F + + N R+ G+ F+ F S + A+ A+ + I I
Sbjct: 488 DSLREVFEK------ATSIRIPQNQGRAKGFAFIEFSSVEDAKEAMDSCNNTEIEGRSIR 541
Query: 269 LSY 271
L +
Sbjct: 542 LEF 544
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 83/166 (50%), Gaps = 12/166 (7%)
Query: 80 FVDSSSAAAVNTEQREEEYSKTR-LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKN 138
FVD + + N+ R + ++ LV N+ +++T + +R +FE+ T + I ++
Sbjct: 452 FVDFTGEKSQNSGSRRVQGGDSKVLVVNNLSYSATEDSLREVFEKA-TSIRI---PQNQG 507
Query: 139 RNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLF 198
R +G AF+ S ++A A+++ + E EGR++++ +++ + + LF
Sbjct: 508 RAKGFAFIEFSSVEDAKEAMDSCNNTEIEGRSIRLEFSQGSGPQGGRGGSAQ---SKTLF 564
Query: 199 IANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSF 244
+ LS + + L+E F V+A ++ + S G+GFV F
Sbjct: 565 VRGLSEDTTEETLKEAFDGS----VNARIVTDRDTGASKGFGFVDF 606
>gi|406606542|emb|CCH42041.1| Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1
[Wickerhamomyces ciferrii]
Length = 482
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 86/180 (47%), Gaps = 9/180 (5%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPD 152
Q E S L + T + + +R +F QHG + ++++ +N AF+ +
Sbjct: 94 QGGREVSNKILYVGGLDKTISEDQLREIFSQHGEIDNVKILFDKNKQNFNYAFIEFQNEL 153
Query: 153 EATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFAT-FNLFIANLSFEARAKDL 211
A+ A L + + + +N+A + Q K + FN+F+ +LS E + L
Sbjct: 154 NASNAFQELNNKTLQNSVISINWA-------YQSQQAKNSSEHFNIFVGDLSTEIDDEQL 206
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271
+ F +E +V A V++ RS GYGFVSF +++ AE A++ QG I + L++
Sbjct: 207 KAAF-NEYKSLVQAHVMWDMQSGRSRGYGFVSFTNQQDAELALTTKQGSQIGNRQVRLNW 265
>gi|170045947|ref|XP_001850551.1| single-stranded DNA-binding protein mssp-1 [Culex quinquefasciatus]
gi|167868784|gb|EDS32167.1| single-stranded DNA-binding protein mssp-1 [Culex quinquefasciatus]
Length = 416
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 83/171 (48%), Gaps = 19/171 (11%)
Query: 90 NTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH-SKNRNRGLAFVTM 148
NT Q+ E+ SKT L + + +T +D+ + Q+GT++ + + + N+ +G FV
Sbjct: 59 NTPQQTEQLSKTNLYIRGLQQGTTDKDLINMCAQYGTIISTKAILDKTTNKCKGYGFVDF 118
Query: 149 GSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARA 208
SP A A+ L++ + ++ AK ++++P NL+IANL +
Sbjct: 119 ESPACAEGAVKGLQA-----KGIQAQMAKQQEQDP-----------TNLYIANLPLNYKE 162
Query: 209 KDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
D+ E +S+ V+S I D +S G GF +S++ E I F G
Sbjct: 163 TDV-ENLLSKYGQVISTR-ILRDQNAQSKGVGFARMESREKCEQIIQIFNG 211
Score = 44.7 bits (104), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 186 PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFK 245
P Q + + NL+I L KDL G ++S + I + GYGFV F+
Sbjct: 61 PQQTEQLSKTNLYIRGLQQGTTDKDLINMCAQYG-TIISTKAILDKTTNKCKGYGFVDFE 119
Query: 246 SKKVAETAISAFQGKVI 262
S AE A+ Q K I
Sbjct: 120 SPACAEGAVKGLQAKGI 136
>gi|374725008|gb|EHR77088.1| putative RNA-binding protein [uncultured marine group II
euryarchaeote]
Length = 477
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 69/162 (42%), Gaps = 3/162 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNL 161
RL +P E++RALF +HG + D + NRG FVT +A AA+ L
Sbjct: 265 RLFVGGLPREVGTEELRALFAEHGDMTDCIVLTDDNGVNRGFGFVTYSEKAQADAAIAKL 324
Query: 162 ESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWD 221
+ ++ GR + V A K + P L++ NL F+A L+ F +G
Sbjct: 325 DGHKVNGRKIGVRDADSDDKKSKRGKRKDPEG-LKLYVGNLPFKATEDQLKALF--DGVA 381
Query: 222 VVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
V+ V+ DN + G+ F K + + G ++
Sbjct: 382 TVNELVMATDNAGKPKGFAFAFVKETDQGDAIVEKLNGTELL 423
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 49/96 (51%)
Query: 82 DSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNR 141
D+ S + + ++ +L N+P+ +T + ++ALF+ TV ++ ++ + + +
Sbjct: 338 DADSDDKKSKRGKRKDPEGLKLYVGNLPFKATEDQLKALFDGVATVNELVMATDNAGKPK 397
Query: 142 GLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177
G AF + D+ A + L E GR +KV+ ++
Sbjct: 398 GFAFAFVKETDQGDAIVEKLNGTELLGRKIKVDVSQ 433
>gi|410928273|ref|XP_003977525.1| PREDICTED: ELAV-like protein 1-like isoform 3 [Takifugu rubripes]
Length = 368
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 82/176 (46%), Gaps = 21/176 (11%)
Query: 95 EEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELS-----------MHSKNRNRGL 143
E+E ++T L+ +P + + E++R+LF G V +L +H ++ + G
Sbjct: 49 EDEDARTNLIVNYLPQSMSQEELRSLFSSVGDVESAKLIRDKVAGNTQTLVHHRSHSLGY 108
Query: 144 AFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLS 203
FV +P +A A+N L + +TLKV+YA+ P + A NL+I+ L
Sbjct: 109 GFVNFVNPSDAVRAINTLNGLRLQSKTLKVSYAR-------PSSEMIKDA--NLYISGLP 159
Query: 204 FEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
A +DL + F G ++++ V+ S G F+ F + AE AI G
Sbjct: 160 RTASQQDLEDMFSHYGR-IINSRVLVDQASGVSRGVAFIRFDKRSEAEDAIKHLNG 214
>gi|428309319|ref|YP_007120296.1| RRM domain-containing RNA-binding protein [Microcoleus sp. PCC
7113]
gi|428250931|gb|AFZ16890.1| RRM domain-containing RNA-binding protein [Microcoleus sp. PCC
7113]
Length = 101
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYE 165
N+ + T EDIR +F ++GTV ++ L + R RG AFV MG+ +E TAA+ L+ E
Sbjct: 7 NLSYDVTEEDIREVFAEYGTVNNVTLPKDRETGRKRGFAFVEMGTDEEETAAIEALDGAE 66
Query: 166 FEGRTLKVNYAKIKKKN-PF 184
+ GR LKVN AK ++ N PF
Sbjct: 67 WMGRNLKVNKAKPREDNKPF 86
>gi|325185984|emb|CCA20488.1| RNAbinding protein putative [Albugo laibachii Nc14]
Length = 754
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 55/102 (53%), Gaps = 5/102 (4%)
Query: 91 TEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGS 150
T Q + +Y+ RL +N+P+++ ED+R +FE G V ++ + + R +G FV+ +
Sbjct: 233 TAQNKADYACNRLFVRNLPFSAVEEDLRTIFEAFGKVAEVHIPLDETKRRKGFGFVSFDT 292
Query: 151 PDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPF 192
+A AL N++ F+GR L V +A+ K P + P
Sbjct: 293 VSDAQKALQNVDGIAFQGRVLYVTFAEAK-----PEITADPL 329
Score = 44.3 bits (103), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAE 251
+A LF+ NL F A +DLR F E + V+ I D +R G+GFVSF + A+
Sbjct: 240 YACNRLFVRNLPFSAVEEDLRTIF--EAFGKVAEVHIPLDETKRRKGFGFVSFDTVSDAQ 297
Query: 252 TAIS-----AFQGKVI 262
A+ AFQG+V+
Sbjct: 298 KALQNVDGIAFQGRVL 313
Score = 41.2 bits (95), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 8/114 (7%)
Query: 72 FSATTQD-PFVDSSSAAAVNTEQREEEY-------SKTRLVAQNVPWTSTHEDIRALFEQ 123
SA+ Q P +D S ++++ E S ++++ +NV + +T DIR+L
Sbjct: 606 LSASEQSSPIIDGHSLRVTLSQKKVERKTSDKDGKSTSKIIIRNVAFEATVHDIRSLCGA 665
Query: 124 HGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177
G + + + R+RG AFV + EA A N+L GR L + +A+
Sbjct: 666 FGQLKRVRMPKKFDGRHRGFAFVEFMTEQEAKDAFNSLCKSHLYGRHLVLEWAE 719
>gi|380027075|ref|XP_003697261.1| PREDICTED: ELAV-like protein 2-like [Apis florea]
Length = 362
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 85/203 (41%), Gaps = 28/203 (13%)
Query: 74 ATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELS 133
A D V + + + +EE SKT L+ +P + T ++IR+LF G V +L
Sbjct: 3 ANGMDTVVQQNGGSTLGQASQEE--SKTNLIVNYLPQSMTQDEIRSLFSSIGEVESCKLI 60
Query: 134 MHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPF 192
++ G FV P++A A+N L + +T+KV+YA+ P +
Sbjct: 61 RDKLTGQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR-------PSSEAIKG 113
Query: 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDN--------------PRRSAG 238
A NL+++ L +DL F G + S I DN P S G
Sbjct: 114 A--NLYVSGLPKNMTQQDLENLFSPYGRIITSR--ILCDNITVRQFVTGGGDYLPGLSKG 169
Query: 239 YGFVSFKSKKVAETAISAFQGKV 261
GF+ F + AE AI G +
Sbjct: 170 VGFIRFDQRVEAERAIQELNGTI 192
>gi|297851860|ref|XP_002893811.1| PAB1 binding protein 1 [Arabidopsis lyrata subsp. lyrata]
gi|297339653|gb|EFH70070.1| PAB1 binding protein 1 [Arabidopsis lyrata subsp. lyrata]
Length = 403
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 86/185 (46%), Gaps = 14/185 (7%)
Query: 89 VNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTM 148
V+ Q +E T + +N+ T+T +D++ +FE+ G + + + ++R FV
Sbjct: 107 VSRRQWDESRVFTNVYVKNLAETTTDDDLKMIFEEFGEITSAVVMKDKEGKSRMFGFVNF 166
Query: 149 GSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQP-----------KPFATFNL 197
+ A A++ + + + L V A+ +KKN ++ K NL
Sbjct: 167 EKAEAAVTAIDKMNGTIVDEKELHVGRAQ-RKKNRIQDLKVIFKLEKIKRDMKTRKGTNL 225
Query: 198 FIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAF 257
++ NL + L+E F SE ++S +V+ H N R S G GFV F + + A A+
Sbjct: 226 YVKNLDYSVDNTKLQELF-SEFGTIISCKVMVHPN-RISKGVGFVEFSTSEEASKAMLKM 283
Query: 258 QGKVI 262
GKV+
Sbjct: 284 NGKVV 288
Score = 37.7 bits (86), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/81 (20%), Positives = 44/81 (54%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T L +N+ ++ + ++ LF + GT++ ++ +H ++G+ FV + +EA+ A+
Sbjct: 223 TNLYVKNLDYSVDNTKLQELFSEFGTIISCKVMVHPNRISKGVGFVEFSTSEEASKAMLK 282
Query: 161 LESYEFEGRTLKVNYAKIKKK 181
+ + + V+ A+ K++
Sbjct: 283 MNGKVVGNKPIYVSLAQCKEE 303
>gi|322695427|gb|EFY87235.1| RNA recognition motif containing protein [Metarhizium acridum CQMa
102]
Length = 725
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 89/182 (48%), Gaps = 19/182 (10%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR-NRGLAFVTMGSPDEATAALNNL 161
L +++P T+E + F QH V + + K + +RG FVT+ D+A AA N L
Sbjct: 44 LFVRSLPANVTNEALADFFSQHFPVKHAVVVVDQKTKESRGYGFVTLADSDDALAAKNTL 103
Query: 162 ESYEFEGRTLKVNYAKIKKKNPF---PPVQPKPFATFN-----LFIANLSFEAR-AKDLR 212
+ E+EG+ ++++ A+ +K+N V KP + L + NL + + ++ L
Sbjct: 104 DKAEWEGKRIRIDIAEPRKRNAANSEKTVHKKPGREESQKPPKLIVRNLPWSIKTSEQLS 163
Query: 213 EFFISEGWDVVSAEVIFHDNPRRSA---GYGFVSFKSKKVAETAISAFQGKVIMCLVIAL 269
F S G +V F D P+ G+GFV+ + KK AE A+ GK I +A+
Sbjct: 164 HLFKSYG------KVKFADLPQSKGKLRGFGFVTIRGKKNAEKALEGVNGKEIDGRTLAV 217
Query: 270 SY 271
+
Sbjct: 218 DW 219
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 94 REEEYSKTRLVAQNVPWT-STHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPD 152
REE +L+ +N+PW+ T E + LF+ +G V +L SK + RG FVT+
Sbjct: 138 REESQKPPKLIVRNLPWSIKTSEQLSHLFKSYGKVKFADLP-QSKGKLRGFGFVTIRGKK 196
Query: 153 EATAALNNLESYEFEGRTLKVNYA 176
A AL + E +GRTL V++A
Sbjct: 197 NAEKALEGVNGKEIDGRTLAVDWA 220
>gi|330802792|ref|XP_003289397.1| hypothetical protein DICPUDRAFT_80171 [Dictyostelium purpureum]
gi|325080515|gb|EGC34067.1| hypothetical protein DICPUDRAFT_80171 [Dictyostelium purpureum]
Length = 628
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 78/167 (46%), Gaps = 16/167 (9%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATA 156
E T + +++P T ED+ LF +G V+ ++ + K + G FV +P+E+ A
Sbjct: 90 EKDSTNIFVKHLPNDFTDEDLAKLFSAYGNVISSKVMIDPKGNSYGYGFVRFSNPNESQA 149
Query: 157 ALNNLESYEFEGRTLKVN----YAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLR 212
A+ L+ ++F+ + L Y + KNP + NLFI L + + LR
Sbjct: 150 AIKELDGFQFQNKKLLCRLSNLYTNLNSKNP----------SNNLFIKPLPADVTDEQLR 199
Query: 213 EFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ F G +V +V+ N +S GFV F + A +AI A G
Sbjct: 200 KLFEPYGK-IVECKVMLDQN-GQSKFAGFVRFFNDSEAASAIDAMNG 244
>gi|170044495|ref|XP_001849881.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167867621|gb|EDS31004.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 393
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 78/171 (45%), Gaps = 18/171 (10%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS--------KNRNRGLAFVTM 148
+ ++T L+ +P T T E+IR+LF G V ++L K ++ G FV
Sbjct: 66 DNARTNLIVNYLPQTMTEEEIRSLFSSVGEVESVKLVRDKNVIYPGQPKGQSLGYGFVNF 125
Query: 149 GSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARA 208
+A A+N L + + LKV++A+ + NL+I+ L
Sbjct: 126 HRSQDAEQAVNVLNGLRLQNKVLKVSFARPSSEG---------IKGANLYISGLPKTITQ 176
Query: 209 KDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
++L F G +++++ V+ D + G GF+ F +K AE AI+A G
Sbjct: 177 EELEIIFRPYG-EIITSRVLVQDGNDKPKGVGFIRFDQRKEAERAIAALNG 226
>gi|13560783|gb|AAK30205.1|AF349964_1 poly(A)-binding protein [Daucus carota]
Length = 658
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 98/193 (50%), Gaps = 16/193 (8%)
Query: 92 EQREEEYSKTR---LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTM 148
+ R+ E SKT+ + +N+ +++ +D+R F ++GT+ + + + +++ FV
Sbjct: 207 QDRDSEMSKTKFNNIYVKNLSDSTSEDDLRKTFGEYGTITSVVVMRDADGKSKCFGFVNF 266
Query: 149 GSPDEATAALNNLESYEFE------GRTLKVNYAKIKKKNPFPPV---QPKPFATFNLFI 199
+P++A A++ L +F+ G+ K + +++ K+ F Q + NL++
Sbjct: 267 ENPEDAAKAVDALNGKKFDDKEWYVGKAQKKSEREVELKSRFEQTVKEQVDKYQGVNLYV 326
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
NL + L+E F SE + S +V+ D S G GFV+F + + A A+ G
Sbjct: 327 KNLDDTIDDEKLKELF-SEYGTITSCKVM-RDPSGISRGSGFVAFSTPEEASRALGEMNG 384
Query: 260 KVIMC--LVIALS 270
K+I+ L +AL+
Sbjct: 385 KMIVSKPLYVALA 397
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 81/167 (48%), Gaps = 10/167 (5%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEAT 155
+++ T L ++ + T + LF Q G V+ + + S R+ G +V + +AT
Sbjct: 36 QFTTTSLYVGDLDQSVTDSQLYDLFNQVGQVVSVRVCRDLSTGRSLGYGYVNYSNQQDAT 95
Query: 156 AALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFF 215
A++ L +T++V+ + +++P + N+FI NL K L E F
Sbjct: 96 RAIDVLNFTPLNNKTIRVS---VSRRDP----TDRKSGAGNIFIKNLDKSIDIKALHETF 148
Query: 216 ISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
S G ++S + I D +S GYGFV + S++ A+TAI G ++
Sbjct: 149 SSFGT-IISCK-IATDASGQSKGYGFVQYDSEEAAQTAIDKLNGMLM 193
Score = 40.4 bits (93), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 42/86 (48%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEAT 155
++Y L +N+ T E ++ LF ++GT+ ++ +RG FV +P+EA+
Sbjct: 317 DKYQGVNLYVKNLDDTIDDEKLKELFSEYGTITSCKVMRDPSGISRGSGFVAFSTPEEAS 376
Query: 156 AALNNLESYEFEGRTLKVNYAKIKKK 181
AL + + L V A+ K++
Sbjct: 377 RALGEMNGKMIVSKPLYVALAQRKEE 402
>gi|345489599|ref|XP_003426177.1| PREDICTED: heterogeneous nuclear ribonucleoprotein 27C-like isoform
2 [Nasonia vitripennis]
Length = 445
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 80/169 (47%), Gaps = 11/169 (6%)
Query: 89 VNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVT 147
V E ++E K +L + W +T E+++ F ++G V+D + +S+ R+RG FVT
Sbjct: 3 VKNEMDDDE--KGKLFVGGLSWETTQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVT 60
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF-NLFIANLSFEA 206
P L N ++ +GRT+ K NP +PK F +F+ L
Sbjct: 61 FSDPSNVGLVLQN-GPHQLDGRTIDP-----KPCNPRTLQKPKRSGGFPKVFLGGLPSNV 114
Query: 207 RAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
DLR FF G V+ +++ ++S G+GF+SF+ + + +
Sbjct: 115 TETDLRSFFQRFG-KVMEVVIMYDQEKKKSRGFGFLSFEDEDAVDRCVG 162
>gi|340719924|ref|XP_003398394.1| PREDICTED: polyadenylate-binding protein 1-like isoform 4 [Bombus
terrestris]
Length = 612
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 96/196 (48%), Gaps = 20/196 (10%)
Query: 92 EQREEEYSK-----TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFV 146
++RE+E + T + +N T + ++ +FE++GT+ ++ + ++RG FV
Sbjct: 178 KEREKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFV 237
Query: 147 TMGSPDEATAALNNLESYEF-EGRTLKVNYAKIKK------KNPFPPVQPKPFATF---N 196
PD A A+ L E EG+ + V A+ K K F ++ + + N
Sbjct: 238 AFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVN 297
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
L++ NL + LR+ F G + SA+V+ + RS G+GFV F + + A A++
Sbjct: 298 LYVKNLDDSIDDERLRKEFAPFGT-ITSAKVMMEEG--RSKGFGFVCFSAPEEATKAVTE 354
Query: 257 FQGKVIMC--LVIALS 270
G++I+ L +AL+
Sbjct: 355 MNGRIIVTKPLYVALA 370
Score = 44.3 bits (103), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 74/155 (47%), Gaps = 15/155 (9%)
Query: 114 HEDIR--ALFEQ---HGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFE 167
H DI LFE+ G VL I + R+ G A+V P +A AL+ + +
Sbjct: 19 HSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDMIK 78
Query: 168 GRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEV 227
GR +++ +++ ++P + N+FI NL K + + F + G +++S +V
Sbjct: 79 GRPIRIMWSQ---RDP----SLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFG-NILSCKV 130
Query: 228 IFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
D S GYGFV F++++ A +I G ++
Sbjct: 131 A-QDESGVSKGYGFVHFETEEAANKSIDRVNGMLL 164
>gi|340709266|ref|XP_003393232.1| PREDICTED: ELAV-like protein 2-like [Bombus terrestris]
Length = 533
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 85/203 (41%), Gaps = 28/203 (13%)
Query: 74 ATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELS 133
A D V + + + +EE SKT L+ +P + T ++IR+LF G V +L
Sbjct: 3 ANGMDTVVQQNGGSTLGQASQEE--SKTNLIVNYLPQSMTQDEIRSLFASIGEVESCKLI 60
Query: 134 MHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPF 192
++ G FV P++A A+N L + +T+KV+YA+ P +
Sbjct: 61 RDKLTGQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR-------PSSEAIKG 113
Query: 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDN--------------PRRSAG 238
A NL+++ L +DL F G + S I DN P S G
Sbjct: 114 A--NLYVSGLPKNMTQQDLENLFNPYGRIITSR--ILCDNITVRQFVTGGGDYLPGLSKG 169
Query: 239 YGFVSFKSKKVAETAISAFQGKV 261
GF+ F + AE AI G V
Sbjct: 170 VGFIRFDQRVEAERAIQELNGTV 192
>gi|170061963|ref|XP_001866463.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167880034|gb|EDS43417.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 341
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 76/166 (45%), Gaps = 12/166 (7%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH--SKNRNRGLAFVTMGSPDE 153
+E SKT L+ +P T T E++++LF G V +L + ++ G FV P++
Sbjct: 22 QEDSKTNLIVNYLPQTMTQEEVKSLFSSIGDVESCKLIRDKVTAGQSLGYGFVNYHRPED 81
Query: 154 ATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLRE 213
A A+N + +T+KV++A+ NL+++ LS +DL
Sbjct: 82 AEKAINTFNGLRLQNKTIKVSFARPSS---------DAIKGANLYVSGLSKSMTQQDLEA 132
Query: 214 FFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
F G ++++ ++ + S G GF+ F + AE AI G
Sbjct: 133 LFQPYG-QIITSRILCDNITGLSKGVGFIRFDQRSEAERAIQQLNG 177
>gi|340719918|ref|XP_003398391.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Bombus
terrestris]
Length = 630
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 96/196 (48%), Gaps = 20/196 (10%)
Query: 92 EQREEEYSK-----TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFV 146
++RE+E + T + +N T + ++ +FE++GT+ ++ + ++RG FV
Sbjct: 178 KEREKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFV 237
Query: 147 TMGSPDEATAALNNLESYEF-EGRTLKVNYAKIKK------KNPFPPVQPKPFATF---N 196
PD A A+ L E EG+ + V A+ K K F ++ + + N
Sbjct: 238 AFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVN 297
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
L++ NL + LR+ F G + SA+V+ + RS G+GFV F + + A A++
Sbjct: 298 LYVKNLDDSIDDERLRKEFAPFGT-ITSAKVMMEEG--RSKGFGFVCFSAPEEATKAVTE 354
Query: 257 FQGKVIMC--LVIALS 270
G++I+ L +AL+
Sbjct: 355 MNGRIIVTKPLYVALA 370
Score = 43.9 bits (102), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 74/155 (47%), Gaps = 15/155 (9%)
Query: 114 HEDIR--ALFEQ---HGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFE 167
H DI LFE+ G VL I + R+ G A+V P +A AL+ + +
Sbjct: 19 HSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDMIK 78
Query: 168 GRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEV 227
GR +++ +++ ++P + N+FI NL K + + F + G +++S +V
Sbjct: 79 GRPIRIMWSQ---RDP----SLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFG-NILSCKV 130
Query: 228 IFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
D S GYGFV F++++ A +I G ++
Sbjct: 131 A-QDESGVSKGYGFVHFETEEAANKSIDRVNGMLL 164
>gi|317036141|ref|XP_001397700.2| pre-RNA splicing factor Srp2 [Aspergillus niger CBS 513.88]
gi|358368362|dbj|GAA84979.1| pre-RNA splicing factor Srp2 [Aspergillus kawachii IFO 4308]
Length = 301
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 83/187 (44%), Gaps = 24/187 (12%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATA 156
E S TRL N+P T +DI F HG+ E+ + + G F+ +A
Sbjct: 3 EVSSTRLYLGNLPRNVTKQDIEEHFSTHGSGKITEIKLMN-----GFGFIEYEDAMDARD 57
Query: 157 ALNNLESYEFEGRTLKVNYAK-IKKKNPFP-----PVQPKPFAT-FNLFIANLSFEARAK 209
+ +F+G L V +A+ ++K FP P P+P T F + ++ L E +
Sbjct: 58 VVPAFHGSDFKGERLTVQFARGPRRKENFPGPMDRPNMPRPRRTIFRMMVSGLP-ETSWQ 116
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA-----FQGKVIMC 264
DL++F G DVV +E R G GFV F++ +TAI F+G + C
Sbjct: 117 DLKDFARQSGLDVVYSETG------RELGRGFVEFETANDLKTAIEKLDGREFKGSRVTC 170
Query: 265 LVIALSY 271
+ +Y
Sbjct: 171 IADIQTY 177
>gi|158295086|ref|XP_001688763.1| AGAP005964-PA [Anopheles gambiae str. PEST]
gi|157015867|gb|EDO63769.1| AGAP005964-PA [Anopheles gambiae str. PEST]
Length = 453
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 83/174 (47%), Gaps = 19/174 (10%)
Query: 90 NTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH-SKNRNRGLAFVTM 148
NT Q+ E+ SKT L + + +T +D+ + Q+G ++ + + + N+ +G FV
Sbjct: 93 NTPQQTEQLSKTNLYIRGLQQGTTDKDLVNMCAQYGNIISTKAILDKTTNKCKGYGFVDF 152
Query: 149 GSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARA 208
SP A A+ L++ + ++ AK ++++P NL+IANL +
Sbjct: 153 ESPSCAEGAVKGLQA-----KGIQAQMAKQQEQDP-----------TNLYIANLPLNYKE 196
Query: 209 KDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
D+ E +S+ V+S I D +S G GF +S+ E I F G ++
Sbjct: 197 TDV-ENLLSKYGQVISTR-ILRDQNAQSKGVGFARMESRDKCEQIIQIFNGTLL 248
>gi|432102707|gb|ELK30188.1| Polyadenylate-binding protein 1 [Myotis davidii]
Length = 650
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 92/193 (47%), Gaps = 17/193 (8%)
Query: 93 QREEEYSK-----TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVT 147
QREEE T + +N +T E + +F Q+G + +++ +++G F+
Sbjct: 186 QREEERRAKMEQFTNVYVKNFADGTTDEYLLEIFSQYGPLSSVKIMTDDSGKSKGFGFIR 245
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKN------PFPPVQPKPFATF---NLF 198
+A A+ + +F GR + V+ A+ KK+ ++ A + +LF
Sbjct: 246 FECHADAKRAIEEVNGKQFGGRKIYVSRAQKKKEREEELQQKLEEIKQNRIAKYHGMSLF 305
Query: 199 IANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ 258
+ NL+ + LR+ F G V SA+VI R+ G+GFVSF S++ A+ A+
Sbjct: 306 VKNLAESTDDEHLRKIFAPFG-TVTSAKVIVKGGRRK--GFGFVSFSSREEAKKAVEEMH 362
Query: 259 GKVIMCLVIALSY 271
GK++ + +SY
Sbjct: 363 GKMLSARPLYVSY 375
Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 69/143 (48%), Gaps = 11/143 (7%)
Query: 121 FEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179
F G +L + + + +R+ G +V P++A ALN + G+ +++ +
Sbjct: 39 FSAAGPILSVRVCRDALSSRSLGYGYVNFHRPEDAGHALNTMNFDVLHGKPVRIMWC--- 95
Query: 180 KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
++P + N+F+ +L K+L + F G ++S +V+ +N + G+
Sbjct: 96 HRDP----SLRRSGVGNVFVNHLDASIDNKELYDLFAGFG-TILSCKVVSDENGPK--GH 148
Query: 240 GFVSFKSKKVAETAISAFQGKVI 262
GFV F++++ A+ AI G ++
Sbjct: 149 GFVHFETREAADKAIKEMNGSLV 171
Score = 41.2 bits (95), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
+ R +Y L +N+ ++ E +R +F GTV ++ + R +G FV+ S
Sbjct: 293 QNRIAKYHGMSLFVKNLAESTDDEHLRKIFAPFGTVTSAKVIVKG-GRRKGFGFVSFSSR 351
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EA A+ + R L V+YA+ K++
Sbjct: 352 EEAKKAVEEMHGKMLSARPLYVSYARYKQE 381
>gi|380019828|ref|XP_003693803.1| PREDICTED: polyadenylate-binding protein 1-like [Apis florea]
Length = 630
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 96/196 (48%), Gaps = 20/196 (10%)
Query: 92 EQREEEYSK-----TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFV 146
++RE+E + T + +N T + ++ +FE++GT+ ++ + ++RG FV
Sbjct: 178 KEREKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFV 237
Query: 147 TMGSPDEATAALNNLESYEF-EGRTLKVNYAKIKK------KNPFPPVQPKPFATF---N 196
PD A A+ L E EG+ + V A+ K K F ++ + + N
Sbjct: 238 AFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVN 297
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
L++ NL + LR+ F G + SA+V+ + RS G+GFV F + + A A++
Sbjct: 298 LYVKNLDDSIDDERLRKEFAPFGT-ITSAKVMMEEG--RSKGFGFVCFSAPEEATKAVTE 354
Query: 257 FQGKVIMC--LVIALS 270
G++I+ L +AL+
Sbjct: 355 MNGRIIVTKPLYVALA 370
Score = 43.5 bits (101), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 74/155 (47%), Gaps = 15/155 (9%)
Query: 114 HEDIR--ALFEQ---HGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFE 167
H DI LFE+ G VL I + R+ G A+V P +A AL+ + +
Sbjct: 19 HSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDMIK 78
Query: 168 GRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEV 227
GR +++ +++ ++P + N+FI NL K + + F + G +++S +V
Sbjct: 79 GRPIRIMWSQ---RDP----SLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFG-NILSCKV 130
Query: 228 IFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
D S GYGFV F++++ A +I G ++
Sbjct: 131 A-QDESGVSKGYGFVHFETEEAANKSIDRVNGMLL 164
>gi|340719922|ref|XP_003398393.1| PREDICTED: polyadenylate-binding protein 1-like isoform 3 [Bombus
terrestris]
Length = 621
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 96/196 (48%), Gaps = 20/196 (10%)
Query: 92 EQREEEYSK-----TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFV 146
++RE+E + T + +N T + ++ +FE++GT+ ++ + ++RG FV
Sbjct: 178 KEREKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFV 237
Query: 147 TMGSPDEATAALNNLESYEF-EGRTLKVNYAKIKK------KNPFPPVQPKPFATF---N 196
PD A A+ L E EG+ + V A+ K K F ++ + + N
Sbjct: 238 AFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVN 297
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
L++ NL + LR+ F G + SA+V+ + RS G+GFV F + + A A++
Sbjct: 298 LYVKNLDDSIDDERLRKEFAPFGT-ITSAKVMMEEG--RSKGFGFVCFSAPEEATKAVTE 354
Query: 257 FQGKVIMC--LVIALS 270
G++I+ L +AL+
Sbjct: 355 MNGRIIVTKPLYVALA 370
Score = 43.9 bits (102), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 74/155 (47%), Gaps = 15/155 (9%)
Query: 114 HEDIR--ALFEQ---HGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFE 167
H DI LFE+ G VL I + R+ G A+V P +A AL+ + +
Sbjct: 19 HSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDMIK 78
Query: 168 GRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEV 227
GR +++ +++ ++P + N+FI NL K + + F + G +++S +V
Sbjct: 79 GRPIRIMWSQ---RDP----SLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFG-NILSCKV 130
Query: 228 IFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
D S GYGFV F++++ A +I G ++
Sbjct: 131 A-QDESGVSKGYGFVHFETEEAANKSIDRVNGMLL 164
>gi|169626491|ref|XP_001806645.1| hypothetical protein SNOG_16535 [Phaeosphaeria nodorum SN15]
gi|160706106|gb|EAT76075.2| hypothetical protein SNOG_16535 [Phaeosphaeria nodorum SN15]
Length = 321
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 74/157 (47%), Gaps = 10/157 (6%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEF 166
N+ + T E ++ +F + G V +++ ++ +RG +V S D+A A++NL+ F
Sbjct: 135 NLYYEVTTEQLQKVFSRFGEVASVKIVYDNRGMSRGFGYVEFKSIDDAQTAIDNLDMQVF 194
Query: 167 EGRTLKVNYAKIKK-----KNPFPPVQPKPFATFNLFIANLSFEARAKDLREFF--ISEG 219
EGR L V Y + K K FPP + LFI N+SFE KDL + F I
Sbjct: 195 EGRNLVVQYHRAKSDSDRPKREFPPAN---LPSKTLFIGNMSFEMSDKDLNDLFRDIRNV 251
Query: 220 WDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
DV A PR A F+ S A+ +SA
Sbjct: 252 NDVRVAIDRRTGQPRGFAHADFLDVASATKAKEILSA 288
>gi|350408504|ref|XP_003488426.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Bombus
impatiens]
Length = 630
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 96/196 (48%), Gaps = 20/196 (10%)
Query: 92 EQREEEYSK-----TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFV 146
++RE+E + T + +N T + ++ +FE++GT+ ++ + ++RG FV
Sbjct: 178 KEREKELGEKAKLFTNVYVKNFGEDMTDDKLKDMFEKYGTITSHKVMIKDDGKSRGFGFV 237
Query: 147 TMGSPDEATAALNNLESYEF-EGRTLKVNYAKIKK------KNPFPPVQPKPFATF---N 196
PD A A+ L E EG+ + V A+ K K F ++ + + N
Sbjct: 238 AFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVN 297
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
L++ NL + LR+ F G + SA+V+ + RS G+GFV F + + A A++
Sbjct: 298 LYVKNLDDSIDDERLRKEFAPFGT-ITSAKVMMEEG--RSKGFGFVCFSAPEEATKAVTE 354
Query: 257 FQGKVIMC--LVIALS 270
G++I+ L +AL+
Sbjct: 355 MNGRIIVTKPLYVALA 370
Score = 43.9 bits (102), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 74/155 (47%), Gaps = 15/155 (9%)
Query: 114 HEDIR--ALFEQ---HGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFE 167
H DI LFE+ G VL I + R+ G A+V P +A AL+ + +
Sbjct: 19 HSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDMIK 78
Query: 168 GRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEV 227
GR +++ +++ ++P + N+FI NL K + + F + G +++S +V
Sbjct: 79 GRPIRIMWSQ---RDP----SLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFG-NILSCKV 130
Query: 228 IFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
D S GYGFV F++++ A +I G ++
Sbjct: 131 A-QDESGVSKGYGFVHFETEEAANKSIDRVNGMLL 164
>gi|52346030|ref|NP_001005062.1| embryonic polyadenylate-binding protein [Xenopus (Silurana)
tropicalis]
gi|82235830|sp|Q6DEY7.1|EPAB_XENTR RecName: Full=Embryonic polyadenylate-binding protein;
Short=Embryonic poly(A)-binding protein; Short=ePABP
gi|49899948|gb|AAH76956.1| MGC89376 protein [Xenopus (Silurana) tropicalis]
Length = 629
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 91/194 (46%), Gaps = 19/194 (9%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHED-----IRALFEQHGTVLDIELSMHSKNRNRGLAFVT 147
+RE EY + NV + ED +R +F G L +++ M R+RG FV
Sbjct: 178 ERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVN 237
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYA--KIKK----KNPFPPVQPKPFATF---NLF 198
G+ +EA A++ + E GR + V A +I++ K F ++ + + NL+
Sbjct: 238 YGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLY 297
Query: 199 IANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ 258
+ NL LR+ F G + SA+V+ S G+GFV F S + A A++
Sbjct: 298 VKNLDDGIDDDRLRKEFSPYG-TITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMN 354
Query: 259 GKVIMC--LVIALS 270
G+++ L +AL+
Sbjct: 355 GRIVSTKPLYVALA 368
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 71/143 (49%), Gaps = 11/143 (7%)
Query: 121 FEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179
F G ++ I + + R+ G A++ P +A AL+ + +GR +++ +++
Sbjct: 31 FSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTMNFEVIKGRPIRIMWSQ-- 88
Query: 180 KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
++P + N+FI NL K L + F + G +++S +V+ ++ R GY
Sbjct: 89 -RDP----GLRKSGVGNVFIKNLDESIDNKALYDTFSAFG-NILSCKVVCDEHGSR--GY 140
Query: 240 GFVSFKSKKVAETAISAFQGKVI 262
GFV F++++ A AI G ++
Sbjct: 141 GFVHFETQEAANRAIQTMNGMLL 163
>gi|422295750|gb|EKU23049.1| hypothetical protein NGA_0682100 [Nannochloropsis gaditana CCMP526]
Length = 227
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 82/168 (48%), Gaps = 20/168 (11%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAA 157
SKT V N+ W +T + + A+ E G VL +E+ HS R++G A VT + ++A+ A
Sbjct: 2 SKTVFVG-NLSWGTTADSLTAIMETAGRVLGVEVQAHSDTGRSKGWALVTFETAEDASRA 60
Query: 158 LNNLESYEFEGRTLKV--NYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFF 215
+ L E EGR L V + +I+K+ F +F+ NL ++ A LR F
Sbjct: 61 MELLCGREVEGRPLYVREDRTEIEKEEGFV-----------VFVGNLPWDMTASGLRTVF 109
Query: 216 IS-EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
+DV I + RS G+G + F+S + A+ AI G +
Sbjct: 110 SEFSPYDV----HIKTNMSGRSRGFGLLRFRSSEEAQRAIEQMHGITV 153
>gi|157118056|ref|XP_001658986.1| hypothetical protein AaeL_AAEL008164 [Aedes aegypti]
gi|108875838|gb|EAT40063.1| AAEL008164-PA [Aedes aegypti]
Length = 363
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 78/171 (45%), Gaps = 18/171 (10%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS--------KNRNRGLAFVTM 148
E ++T L+ +P T T E+IR+LF G V ++L K ++ G FV
Sbjct: 30 ETARTNLIVNYLPQTMTEEEIRSLFSSVGEVESVKLVRDKNVIYPGQPKGQSLGYGFVNF 89
Query: 149 GSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARA 208
+A A+N L + + LKV++A+ + NL+I+ L
Sbjct: 90 HRSQDAEQAVNVLNGLRLQNKVLKVSFARPSSEG---------IKGANLYISGLPKTITQ 140
Query: 209 KDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
++L F G +++++ V+ + + G GF+ F +K AE AI+A G
Sbjct: 141 EELETIFRPYG-EIITSRVLVQEGNDKPKGVGFIRFDQRKEAERAIAALNG 190
>gi|350408506|ref|XP_003488427.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Bombus
impatiens]
Length = 621
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 96/196 (48%), Gaps = 20/196 (10%)
Query: 92 EQREEEYSK-----TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFV 146
++RE+E + T + +N T + ++ +FE++GT+ ++ + ++RG FV
Sbjct: 178 KEREKELGEKAKLFTNVYVKNFGEDMTDDKLKDMFEKYGTITSHKVMIKDDGKSRGFGFV 237
Query: 147 TMGSPDEATAALNNLESYEF-EGRTLKVNYAKIKK------KNPFPPVQPKPFATF---N 196
PD A A+ L E EG+ + V A+ K K F ++ + + N
Sbjct: 238 AFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVN 297
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
L++ NL + LR+ F G + SA+V+ + RS G+GFV F + + A A++
Sbjct: 298 LYVKNLDDSIDDERLRKEFAPFGT-ITSAKVMMEEG--RSKGFGFVCFSAPEEATKAVTE 354
Query: 257 FQGKVIMC--LVIALS 270
G++I+ L +AL+
Sbjct: 355 MNGRIIVTKPLYVALA 370
Score = 43.9 bits (102), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 74/155 (47%), Gaps = 15/155 (9%)
Query: 114 HEDIR--ALFEQ---HGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFE 167
H DI LFE+ G VL I + R+ G A+V P +A AL+ + +
Sbjct: 19 HSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDMIK 78
Query: 168 GRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEV 227
GR +++ +++ ++P + N+FI NL K + + F + G +++S +V
Sbjct: 79 GRPIRIMWSQ---RDP----SLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFG-NILSCKV 130
Query: 228 IFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
D S GYGFV F++++ A +I G ++
Sbjct: 131 A-QDESGVSKGYGFVHFETEEAANKSIDRVNGMLL 164
>gi|403342322|gb|EJY70479.1| hypothetical protein OXYTRI_08772 [Oxytricha trifallax]
Length = 471
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 82/161 (50%), Gaps = 10/161 (6%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + N+P+T+ E ++A FE GT++++ + M K R +G AF+ + EA A+
Sbjct: 186 TEIFVGNIPFTTDAETLKAKFEAIGTIVNVSIPMSGK-RMKGYAFIKFSTRAEAEKAVKK 244
Query: 161 LESYEFEGRTLKVNYA-------KIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLRE 213
L ++F+GR LKVN++ + KK + + + +FI NLS+ +++R+
Sbjct: 245 LNDFDFDGRQLKVNFSSGKEAEKREKKTGDENGEKKEQTKSSTVFIGNLSYSTNEQNIRK 304
Query: 214 FFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAI 254
G ++ + ++ + G+ V F+ + AE A+
Sbjct: 305 LLKDCG-EIKGVRIALGEDGKMK-GFAHVEFEDAESAEKAM 343
>gi|158295088|ref|XP_316007.4| AGAP005964-PB [Anopheles gambiae str. PEST]
gi|157015868|gb|EAA10943.4| AGAP005964-PB [Anopheles gambiae str. PEST]
Length = 365
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 83/174 (47%), Gaps = 19/174 (10%)
Query: 90 NTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH-SKNRNRGLAFVTM 148
NT Q+ E+ SKT L + + +T +D+ + Q+G ++ + + + N+ +G FV
Sbjct: 5 NTPQQTEQLSKTNLYIRGLQQGTTDKDLVNMCAQYGNIISTKAILDKTTNKCKGYGFVDF 64
Query: 149 GSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARA 208
SP A A+ L++ + ++ AK ++++P NL+IANL +
Sbjct: 65 ESPSCAEGAVKGLQA-----KGIQAQMAKQQEQDP-----------TNLYIANLPLNYKE 108
Query: 209 KDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
D+ E +S+ V+S I D +S G GF +S+ E I F G ++
Sbjct: 109 TDV-ENLLSKYGQVISTR-ILRDQNAQSKGVGFARMESRDKCEQIIQIFNGTLL 160
>gi|74137801|dbj|BAE24074.1| unnamed protein product [Mus musculus]
Length = 550
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 84/166 (50%), Gaps = 14/166 (8%)
Query: 116 DIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175
+++ LF Q G L +++ S ++RG FV+ ++A A++ + E G+ + V
Sbjct: 107 NLKELFSQFGKTLSVKVMRDSSGKSRGFGFVSYEKHEDANKAVDEMNGKEMSGKAIFVGR 166
Query: 176 AKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSAE 226
A+ K K F ++ + + + NL+I NL + LR+ F G + SA+
Sbjct: 167 AQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSAK 225
Query: 227 VIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIALS 270
V+ D RS G+GFV F S++ A A++ G+++ L +AL+
Sbjct: 226 VMLEDG--RSKGFGFVCFPSREEATKAVTEMNGRIVGSKPLYVALA 269
>gi|189218303|ref|YP_001938945.1| RNA-binding protein (RRM domain) [Methylacidiphilum infernorum V4]
gi|189185161|gb|ACD82346.1| RNA-binding protein (RRM domain) [Methylacidiphilum infernorum V4]
Length = 143
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
++TRL N+P+ + D+R +FEQ+G V +I L + ++RG AFVTM S A +A
Sbjct: 45 NRTRLYVGNLPFRISENDLREIFEQYGQVNEINLIVDKMTGQSRGFAFVTMESSQAAQSA 104
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNP 183
+NNL GR + VN AK +++ P
Sbjct: 105 INNLNGSSVSGRQIVVNEAKPREERP 130
>gi|393245114|gb|EJD52625.1| hypothetical protein AURDEDRAFT_111257 [Auricularia delicata
TFB-10046 SS5]
Length = 103
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSPDEATAALN 159
+++ N+ W +T E +R+ F+ G +LD I + R+RG FVT GSP EA +A+
Sbjct: 3 SKVYVGNLSWNTTDETLRSAFQDFGQILDSIVMRDRDTGRSRGFGFVTFGSPQEADSAIQ 62
Query: 160 NLESYEFEGRTLKVNYAKIK 179
L E +GR +KVN A +
Sbjct: 63 ALNDQELDGRRIKVNLANAR 82
>gi|429892782|gb|AGA18936.1| heterogeneous nuclear ribonucleoprotein, partial [Drosophila
melanogaster]
Length = 420
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 71/157 (45%), Gaps = 8/157 (5%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSPDEA 154
EE + +L + W +T E++ F + G ++D + + + R+RG FVT P
Sbjct: 1 EEDERGKLFVDGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNV 60
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
L N + +GRT+ K NP +PK + +F+ L DLR F
Sbjct: 61 NHVLQN-GPHTLDGRTIDP-----KPCNPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTF 114
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAE 251
F G V +++ ++S G+GF+SF+ + E
Sbjct: 115 FNRYG-KVTEVVIMYDQEKKKSRGFGFLSFEEESSVE 150
>gi|148222587|ref|NP_001079614.1| RNA binding motif protein 14 [Xenopus laevis]
gi|80477004|gb|AAI08787.1| MGC52864 protein [Xenopus laevis]
Length = 467
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 74/168 (44%), Gaps = 27/168 (16%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALN 159
+ ++ NV +T E+I LFE++GTV++ + AFV M +EAT A+
Sbjct: 7 RMKIFVGNVDDRTTQEEITELFERYGTVVNCAVMKQ-------YAFVHMRGAEEATKAVE 59
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEG 219
+L E G+ + V +K P+P T+ +F+ N+S ++R+ F G
Sbjct: 60 DLNGRELNGKKMLVELSK-----------PRPQNTWKIFVGNVSSSCEGSEIRKIFEEYG 108
Query: 220 WDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVI 267
VV +++ Y FV + A AI A GK I I
Sbjct: 109 R-VVECDIV--------KDYAFVHMTRESEARAAIEALNGKEIKGKRI 147
>gi|268533576|ref|XP_002631916.1| Hypothetical protein CBG07904 [Caenorhabditis briggsae]
Length = 411
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 76/159 (47%), Gaps = 4/159 (2%)
Query: 113 THEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
T E + LF Q G V ++ N AF+ G ++A AL + R ++
Sbjct: 49 TDEFLATLFNQIGAVTKAKVCFDGMNDP--FAFIEFGDHNQAGQALQAMNGRSLLDREMR 106
Query: 173 VNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDN 232
VN+A + P + + F++F+ +LS E + LRE F++ G DV A++I
Sbjct: 107 VNWA-VDASQPGDSRKQETSRHFHVFVGDLSSEVDSTKLREAFLAFG-DVSEAKIIRDTA 164
Query: 233 PRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271
++ GYGFVS+ ++ AE AI G+ + I ++
Sbjct: 165 TNKAKGYGFVSYPRREDAERAIEQMNGQWLGRRTIRTNW 203
>gi|308475439|ref|XP_003099938.1| hypothetical protein CRE_24556 [Caenorhabditis remanei]
gi|308266205|gb|EFP10158.1| hypothetical protein CRE_24556 [Caenorhabditis remanei]
Length = 408
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 81/160 (50%), Gaps = 3/160 (1%)
Query: 113 THEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTL 171
T E + LF Q G V ++ + N AFV ++A+ AL ++ + R +
Sbjct: 50 TDEFLATLFNQIGAVTKAKIIFDCFQGLNDPFAFVEFSDHNQASQALQSMNGRQLLEREM 109
Query: 172 KVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD 231
+VN+A ++ P +P+ F++F+ +LS E + LRE F+ G +V A++I +
Sbjct: 110 RVNWA-VEPNQPGDRNKPETSRHFHVFVGDLSAEIDSTKLREAFLPFG-EVSEAKIIRDN 167
Query: 232 NPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271
++ GYGFVS+ ++ AE AI G+ + I ++
Sbjct: 168 ATNKAKGYGFVSYPRREDAERAIEQMNGQWLGRRTIRTNW 207
>gi|429892776|gb|AGA18933.1| heterogeneous nuclear ribonucleoprotein [Drosophila melanogaster]
Length = 421
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 71/157 (45%), Gaps = 8/157 (5%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSPDEA 154
EE + +L + W +T E++ F + G ++D + + + R+RG FVT P
Sbjct: 2 EEDERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNV 61
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
L N + +GRT+ K NP +PK + +F+ L DLR F
Sbjct: 62 NHVLQN-GPHTLDGRTIDP-----KPCNPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTF 115
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAE 251
F G V +++ ++S G+GF+SF+ + E
Sbjct: 116 FNRYG-KVTEVVIMYDQEKKKSRGFGFLSFEEESSVE 151
>gi|429892784|gb|AGA18937.1| heterogeneous nuclear ribonucleoprotein, partial [Drosophila
melanogaster]
Length = 420
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 71/157 (45%), Gaps = 8/157 (5%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSPDEA 154
EE + +L + W +T E++ F + G ++D + + + R+RG FVT P
Sbjct: 1 EEDERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNV 60
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
L N + +GRT+ K NP +PK + +F+ L DLR F
Sbjct: 61 NHVLQN-GPHTLDGRTIDP-----KPCNPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTF 114
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAE 251
F G V +++ ++S G+GF+SF+ + E
Sbjct: 115 FNRYG-KVTEVVIMYDQEKKKSRGFGFLSFEEESSVE 150
>gi|170044609|ref|XP_001849934.1| polyadenylate-binding protein 1 [Culex quinquefasciatus]
gi|167867688|gb|EDS31071.1| polyadenylate-binding protein 1 [Culex quinquefasciatus]
Length = 628
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 97/196 (49%), Gaps = 21/196 (10%)
Query: 92 EQREEEYSK-----TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFV 146
++RE+E + T + +N T E ++ +FE++GT+ + M +N++RG FV
Sbjct: 169 KEREKELGEKAKLFTNVYVKNFGDELTDESLKEMFEKYGTITSHRV-MIKENKSRGFGFV 227
Query: 147 TMGSPDEATAALNNLESYE-------FEGRTLKVNYAKIKKKNPFPPVQPKPFATF---N 196
+P+ A A+ L E + GR K N +++ K F ++ + + N
Sbjct: 228 AFENPESAEVAVQELNGKELGDGKVLYVGRAQKKNERQMELKRRFEQLKMERLTRYQGVN 287
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
L++ NL + LR+ F G + SA+V+ + RS G+GFV F + + A A++
Sbjct: 288 LYVKNLDDSIDDERLRKEFSPFGT-ITSAKVMLEEG--RSKGFGFVCFSAAEEATKAVTE 344
Query: 257 FQGKVIMC--LVIALS 270
G+++ L +AL+
Sbjct: 345 MNGRIVGSKPLYVALA 360
Score = 44.7 bits (104), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 75/155 (48%), Gaps = 15/155 (9%)
Query: 114 HEDIR--ALFEQ---HGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFE 167
H DI LFE+ G VL I + R+ G A+V P +A AL+ + +
Sbjct: 10 HADITEAMLFEKFSSAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDTMNFDLIK 69
Query: 168 GRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEV 227
GR +++ +++ ++P + N+FI NL K + + F + G +++S +V
Sbjct: 70 GRPIRIMWSQ---RDP----SLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFG-NILSCKV 121
Query: 228 IFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
D S GYGFV F++++ A T+I G ++
Sbjct: 122 A-QDEKGNSKGYGFVHFETEESANTSIEKVNGMLL 155
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 63/140 (45%), Gaps = 4/140 (2%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L +++ K ++G FV + + A ++ + + + V I +
Sbjct: 110 FSAFGNILSCKVAQDEKGNSKGYGFVHFETEESANTSIEKVNGMLLNAKKVFVGRF-IPR 168
Query: 181 KNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYG 240
K + K N+++ N E + L+E F G + S V+ +N +S G+G
Sbjct: 169 KEREKELGEKAKLFTNVYVKNFGDELTDESLKEMFEKYGT-ITSHRVMIKEN--KSRGFG 225
Query: 241 FVSFKSKKVAETAISAFQGK 260
FV+F++ + AE A+ GK
Sbjct: 226 FVAFENPESAEVAVQELNGK 245
>gi|429892772|gb|AGA18931.1| heterogeneous nuclear ribonucleoprotein, partial [Drosophila
melanogaster]
Length = 420
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 71/157 (45%), Gaps = 8/157 (5%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSPDEA 154
EE + +L + W +T E++ F + G ++D + + + R+RG FVT P
Sbjct: 1 EEDERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNV 60
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
L N + +GRT+ K NP +PK + +F+ L DLR F
Sbjct: 61 NHVLQN-GPHTLDGRTIDP-----KPCNPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTF 114
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAE 251
F G V +++ ++S G+GF+SF+ + E
Sbjct: 115 FNRYG-KVTEVVIMYDQEKKKSRGFGFLSFEEESSVE 150
>gi|383767221|ref|YP_005446202.1| RNA-binding protein [Phycisphaera mikurensis NBRC 102666]
gi|381387489|dbj|BAM04305.1| RNA-binding protein [Phycisphaera mikurensis NBRC 102666]
Length = 112
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
++ N+ W +T ED+ ALF +G+V D I L+ R+RG FVTMG D A A++
Sbjct: 2 KMYVGNLAWRTTTEDLEALFSNYGSVSDAIVLTDRETGRSRGFGFVTMGDED-AKKAIDA 60
Query: 161 LESYEFEGRTLKVNYAK 177
L+ +FEGR L+VN A+
Sbjct: 61 LDGSDFEGRPLRVNEAQ 77
>gi|198425950|ref|XP_002126161.1| PREDICTED: similar to ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 (Hu antigen D) [Ciona intestinalis]
Length = 564
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 78/166 (46%), Gaps = 11/166 (6%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEAT 155
+ SKT L+ +P T ED+R LF G + +L ++ G FV +A
Sbjct: 84 DESKTNLIINYLPQAMTQEDLRNLFSSIGELESCKLIRDKLTGQSLGYGFVNYVKAADAE 143
Query: 156 AALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFF 215
A+N+L + +T+KV++A+ P P+ NL+++ L +DL+ F
Sbjct: 144 KAINSLNGLRMQQKTIKVSFAR-----PSTPL----IKDANLYVSGLPKSMTQEDLQRIF 194
Query: 216 ISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKV 261
G ++++ ++ + S G GFV F + AE AISA G +
Sbjct: 195 HPFG-RIITSRILVEPSTGMSRGVGFVRFDKRPEAENAISALNGTI 239
>gi|429892780|gb|AGA18935.1| heterogeneous nuclear ribonucleoprotein [Drosophila melanogaster]
Length = 421
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 71/157 (45%), Gaps = 8/157 (5%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSPDEA 154
EE + +L + W +T E++ F + G ++D + + + R+RG FVT P
Sbjct: 2 EEDERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNV 61
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
L N + +GRT+ K NP +PK + +F+ L DLR F
Sbjct: 62 NHVLQN-GPHTLDGRTIDP-----KPCNPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTF 115
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAE 251
F G V +++ ++S G+GF+SF+ + E
Sbjct: 116 FNRYG-KVTEVVIMYDQEKKKSRGFGFLSFEEESSVE 151
>gi|429892778|gb|AGA18934.1| heterogeneous nuclear ribonucleoprotein [Drosophila melanogaster]
Length = 421
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 71/157 (45%), Gaps = 8/157 (5%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSPDEA 154
EE + +L + W +T E++ F + G ++D + + + R+RG FVT P
Sbjct: 2 EEDERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNV 61
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
L N + +GRT+ K NP +PK + +F+ L DLR F
Sbjct: 62 NHVLQN-GPHTLDGRTIDP-----KPCNPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTF 115
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAE 251
F G V +++ ++S G+GF+SF+ + E
Sbjct: 116 FNRYG-KVTEVVIMYDQEKKKSRGFGFLSFEEESSVE 151
>gi|270014670|gb|EFA11118.1| hypothetical protein TcasGA2_TC004718 [Tribolium castaneum]
Length = 350
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 77/177 (43%), Gaps = 22/177 (12%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIEL------------SMHSKNRNRGLA 144
E SKT L+ +P T T E+IR+LF G V +L S ++ G
Sbjct: 27 EESKTNLIVNYLPQTMTQEEIRSLFSSIGEVESCKLIRDKVTVPGVITSPLLTGQSLGYG 86
Query: 145 FVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSF 204
FV P++A A+N L + +T+KV+YA+ + NL+++ L
Sbjct: 87 FVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSS---------EAIKGANLYVSGLPK 137
Query: 205 EARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKV 261
+DL F G ++++ ++ + S G GF+ F + AE AI G +
Sbjct: 138 NMTQQDLESLFSPYG-RIITSRILCDNITGLSKGVGFIRFDQRLEAERAIQELNGTI 193
>gi|410928269|ref|XP_003977523.1| PREDICTED: ELAV-like protein 1-like isoform 1 [Takifugu rubripes]
Length = 334
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 78/166 (46%), Gaps = 11/166 (6%)
Query: 95 EEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDE 153
E+E ++T L+ +P + + E++R+LF G V +L + G FV +P +
Sbjct: 25 EDEDARTNLIVNYLPQSMSQEELRSLFSSVGDVESAKLIRDKVAGHSLGYGFVNFVNPSD 84
Query: 154 ATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLRE 213
A A+N L + +TLKV+YA+ P + A NL+I+ L A +DL +
Sbjct: 85 AVRAINTLNGLRLQSKTLKVSYAR-------PSSEMIKDA--NLYISGLPRTASQQDLED 135
Query: 214 FFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
F G ++++ V+ S G F+ F + AE AI G
Sbjct: 136 MFSHYG-RIINSRVLVDQASGVSRGVAFIRFDKRSEAEDAIKHLNG 180
>gi|241831489|ref|XP_002414860.1| apoptosis-promoting RNA-binding protein TIA-1/TIAR, putative
[Ixodes scapularis]
gi|215509072|gb|EEC18525.1| apoptosis-promoting RNA-binding protein TIA-1/TIAR, putative
[Ixodes scapularis]
Length = 686
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 80/162 (49%), Gaps = 13/162 (8%)
Query: 120 LFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179
+FE++G + ++ +NRG FV+ PD A A+ L + GR L V A+ K
Sbjct: 211 IFEKYGKITSAKVMTDDSGKNRGFGFVSFEEPDSAERAVEELNGKDMGGRPLYVGRAQKK 270
Query: 180 K------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFH 230
K F ++ + + NL++ NL + LR+ F G ++ SA+V+
Sbjct: 271 AERQSELKRHFEQLKQERLNRYQGVNLYVKNLDDALDDERLRKEFGPFG-NITSAKVMTD 329
Query: 231 DNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIALS 270
N RS G+GFV F S + A A++ G++++ L +AL+
Sbjct: 330 ANG-RSKGFGFVCFSSPEEATKAVTEMNGRIVVSKPLYVALA 370
Score = 40.8 bits (94), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 67/143 (46%), Gaps = 10/143 (6%)
Query: 121 FEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179
F G VL I + R+ G A+V P +A AL+ + + + +++ +++
Sbjct: 31 FSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDAIKNKPIRIMWSQ-- 88
Query: 180 KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
++P + N+FI NL K + + F + G +++S V D S GY
Sbjct: 89 -RDP----SLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFG-NILSCRVAT-DEEAASKGY 141
Query: 240 GFVSFKSKKVAETAISAFQGKVI 262
GFV F++++ A AIS G ++
Sbjct: 142 GFVHFETEEAANKAISKVNGMLL 164
Score = 40.4 bits (93), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 68/156 (43%), Gaps = 5/156 (3%)
Query: 106 QNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYE 165
+N+ T ++ + F G +L ++ + ++G FV + + A A++ +
Sbjct: 104 KNLDKTIDNKAMYDTFSAFGNILSCRVATDEEAASKGYGFVHFETEEAANKAISKVNGML 163
Query: 166 FEGRTLKVNYAK-IKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVS 224
+ KV K I +K + K N++I N E D + I E + ++
Sbjct: 164 LNNK--KVYVGKFIPRKEREKMLGDKARCFTNVYIKNFGDEL--DDDKLLVIFEKYGKIT 219
Query: 225 AEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
+ + D+ ++ G+GFVSF+ AE A+ GK
Sbjct: 220 SAKVMTDDSGKNRGFGFVSFEEPDSAERAVEELNGK 255
>gi|195156455|ref|XP_002019115.1| GL26194 [Drosophila persimilis]
gi|194115268|gb|EDW37311.1| GL26194 [Drosophila persimilis]
Length = 223
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 71/157 (45%), Gaps = 8/157 (5%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSPDEA 154
EE + +L + W +T E++ F + G ++D + + + R+RG FVT P
Sbjct: 2 EEDERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNV 61
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
L N + +GRT+ K NP +PK + +F+ L DLR F
Sbjct: 62 NHVLQN-GPHTLDGRTIDP-----KPCNPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTF 115
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAE 251
F G V +++ ++S G+GF+SF+ + E
Sbjct: 116 FGRYG-KVTEVVIMYDQEKKKSRGFGFLSFEEESSVE 151
>gi|45360753|ref|NP_989050.1| RNA binding motif protein 14 [Xenopus (Silurana) tropicalis]
gi|38174074|gb|AAH61344.1| RNA binding motif protein 14 [Xenopus (Silurana) tropicalis]
gi|89269922|emb|CAJ81697.1| novel protein containing RNA recognition motifs. (a.k.a. RRM, RBD,
or RNP domain) [Xenopus (Silurana) tropicalis]
Length = 468
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 27/168 (16%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALN 159
+ ++ NV ++T E+I LFE++GTV++ + AFV M +EAT A+
Sbjct: 7 RMKIFVGNVDDSTTQEEITELFERYGTVVNCAVMKQ-------YAFVHMRGSEEATKAVE 59
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEG 219
+L E G+ + V +K P+P T+ +F+ N+S ++R+ F G
Sbjct: 60 DLNGRELNGKKMLVELSK-----------PRPQNTWKIFVGNVSSSCEVSEIRKMFEEHG 108
Query: 220 WDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVI 267
VV +++ Y FV + + AI A GK + I
Sbjct: 109 R-VVECDIV--------KDYAFVHMTRESESRAAIEALNGKEVKGKRI 147
>gi|452820609|gb|EME27649.1| poly(A) binding / translation initiation factor [Galdieria
sulphuraria]
Length = 784
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 86/182 (47%), Gaps = 14/182 (7%)
Query: 92 EQREEEYSKTRLVAQN-VPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGS 150
E EE + T + +N +P T E IR LF +G + + + + +G AFV
Sbjct: 250 EASEETHIFTNVYTKNLIPSMCTEEKIRELFSLYGEITSVYVPVDENEVPKGFAFVNFAK 309
Query: 151 PDEATAALNNLESYEFEGRTLKVNYA----------KIKKKNPFPPVQPKPFATFNLFIA 200
P+ A A+ L +FEG++L V A + K +N + K + NL++
Sbjct: 310 PECAAKAVEELNGRDFEGKSLYVGRAQKKAEREAELRRKAENKRAEIL-KKYQGVNLYVR 368
Query: 201 NLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
NL + + LR+ F + + +++ + D+ S G+GFV F + + A A++ GK
Sbjct: 369 NLPDDMDEEGLRKEFSN--FGTLTSCRVMRDDKGVSRGFGFVCFSTPEEATKAVTEMNGK 426
Query: 261 VI 262
++
Sbjct: 427 MM 428
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEAT 155
++Y L +N+P E +R F GT+ + K +RG FV +P+EAT
Sbjct: 358 KKYQGVNLYVRNLPDDMDEEGLRKEFSNFGTLTSCRVMRDDKGVSRGFGFVCFSTPEEAT 417
Query: 156 AALNNLESYEFEGRTLKVNYAKIKK 180
A+ + + L V A+ K+
Sbjct: 418 KAVTEMNGKMMGKKPLYVCLAQRKE 442
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 63/127 (49%), Gaps = 12/127 (9%)
Query: 139 RNRGLAFVTMGSPDEATAALNNLESY---EFEGRTLKVNYAKIKKKNPFPPVQPKPFATF 195
R+ G A+V S D+A AL + Y + + +++ + KN P + +
Sbjct: 116 RSLGYAYVNFHSMDDAERALETMNFYACPQTRDKPMRLMW-----KNRDPTI--RKSGAG 168
Query: 196 NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
N+FI NL K L + F G +++S +V D+ S GYGFV F++ + AETAI+
Sbjct: 169 NVFIKNLDKAIDNKTLFDTFSVFG-NILSCKVA-TDDEGNSLGYGFVHFENPEDAETAIN 226
Query: 256 AFQGKVI 262
G ++
Sbjct: 227 KVNGMLL 233
>gi|296805985|ref|XP_002843812.1| nucleic acid-binding protein [Arthroderma otae CBS 113480]
gi|238845114|gb|EEQ34776.1| nucleic acid-binding protein [Arthroderma otae CBS 113480]
Length = 318
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 80/174 (45%), Gaps = 7/174 (4%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALN 159
K+ + N+ + T D++ ++G V+ + S+ +RG +V + +EA A+N
Sbjct: 89 KSTVYVGNILFDITAADLKEYASKYGKVVGSRIIYDSRGLSRGFGYVKFENIEEAKKAVN 148
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFF--IS 217
++ EFEGR L VNYA++ K P +P T +F+ N++ + +DL E F I
Sbjct: 149 DMHLSEFEGRKLSVNYAQMDLKEETPQRTIEP--TRTVFVGNIAHQITDRDLHELFDSIP 206
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271
+DV A PR G+ F + A A +GK + L Y
Sbjct: 207 NVFDVRVAVDRRTGMPR---GFAHAEFTDVESAIAGFEALKGKAPYGRPLRLDY 257
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 7/82 (8%)
Query: 184 FPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVS 243
PP +P P +++ N+ F+ A DL+E+ G VV + +I+ D+ S G+G+V
Sbjct: 79 LPPTRPSPEPKSTVYVGNILFDITAADLKEYASKYG-KVVGSRIIY-DSRGLSRGFGYVK 136
Query: 244 FKS-----KKVAETAISAFQGK 260
F++ K V + +S F+G+
Sbjct: 137 FENIEEAKKAVNDMHLSEFEGR 158
>gi|194760296|ref|XP_001962377.1| GF15435 [Drosophila ananassae]
gi|190616074|gb|EDV31598.1| GF15435 [Drosophila ananassae]
Length = 421
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 71/157 (45%), Gaps = 8/157 (5%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSPDEA 154
EE + +L + W +T E++ F + G ++D + + + R+RG FVT P
Sbjct: 2 EEDERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNV 61
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
L N + +GRT+ K NP +PK + +F+ L DLR F
Sbjct: 62 NHVLQN-GPHTLDGRTIDP-----KPCNPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTF 115
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAE 251
F G V +++ ++S G+GF+SF+ + E
Sbjct: 116 FGRYG-KVTEVVIMYDQEKKKSRGFGFLSFEEESSVE 151
>gi|410928271|ref|XP_003977524.1| PREDICTED: ELAV-like protein 1-like isoform 2 [Takifugu rubripes]
Length = 358
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 78/166 (46%), Gaps = 11/166 (6%)
Query: 95 EEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDE 153
E+E ++T L+ +P + + E++R+LF G V +L + G FV +P +
Sbjct: 49 EDEDARTNLIVNYLPQSMSQEELRSLFSSVGDVESAKLIRDKVAGHSLGYGFVNFVNPSD 108
Query: 154 ATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLRE 213
A A+N L + +TLKV+YA+ P + A NL+I+ L A +DL +
Sbjct: 109 AVRAINTLNGLRLQSKTLKVSYAR-------PSSEMIKDA--NLYISGLPRTASQQDLED 159
Query: 214 FFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
F G ++++ V+ S G F+ F + AE AI G
Sbjct: 160 MFSHYGR-IINSRVLVDQASGVSRGVAFIRFDKRSEAEDAIKHLNG 204
>gi|28175406|gb|AAH45210.1| MGC52864 protein [Xenopus laevis]
Length = 460
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 71/161 (44%), Gaps = 27/161 (16%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEF 166
NV +T E+I LFE++GTV++ + AFV M +EAT A+ +L E
Sbjct: 7 NVDDRTTQEEITELFERYGTVVNCAVMKQ-------YAFVHMRGAEEATKAVEDLNGREL 59
Query: 167 EGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAE 226
G+ + V +K P+P T+ +F+ N+S ++R+ F G VV +
Sbjct: 60 NGKKMLVELSK-----------PRPQNTWKIFVGNVSSSCEGSEIRKIFEEYGR-VVECD 107
Query: 227 VIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVI 267
++ Y FV + A AI A GK I I
Sbjct: 108 IV--------KDYAFVHMTRESEARAAIEALNGKEIKGKRI 140
>gi|149023880|gb|EDL80377.1| rCG31475, isoform CRA_c [Rattus norvegicus]
Length = 630
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 83/167 (49%), Gaps = 14/167 (8%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E++R LF Q G L +++ +++G FV+ ++A A+ + E G+++ V
Sbjct: 205 ENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIALS 270
+V+ D RS G+GFV F S + A A++ G+++ L +AL+
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Score = 37.4 bits (85), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ ++ M R++G FV SP
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-MLEDGRSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|392595814|gb|EIW85137.1| polyadenylate binding protein [Coniophora puteana RWD-64-598 SS2]
Length = 683
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 81/171 (47%), Gaps = 11/171 (6%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T L +N+ T E+ LF ++G+V + + + R++G FV S +EA AA++N
Sbjct: 226 TNLYIKNLDTEVTQEEFEELFNRYGSVTSAIVQVDDEGRSKGFGFVNYESHEEAQAAVDN 285
Query: 161 LESYEFEGRTLKVNYAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDL 211
L + +G+ L V A+ K + + + + + + NL++ NL + L
Sbjct: 286 LHDTDLKGKKLYVTRAQKKAEREEELRRSYEQAKMEKLSKYQGVNLYVKNLEDDVDDDKL 345
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
R F E + +++ + D S G+GFV F S A AI+ K+I
Sbjct: 346 RAEF--EPFGTITSCKVMSDEKGSSKGFGFVCFSSPDEATKAIAEMNNKMI 394
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 74/153 (48%), Gaps = 10/153 (6%)
Query: 111 TSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGR 169
T T I +F G V I + + R+ G A+V + + AL L +GR
Sbjct: 55 TVTEAMIFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNTADGERALEQLNYSLIKGR 114
Query: 170 TLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIF 229
++ +++ ++P + N+FI NL + K L + F++ G +V+S +V
Sbjct: 115 PCRIMWSQ---RDP----ALRKTGQGNIFIKNLDEQIDNKALHDTFVAFG-NVLSCKVAT 166
Query: 230 HDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
D RS GYGFV +++ + AETAI A G ++
Sbjct: 167 -DEQGRSKGYGFVHYETAEAAETAIKAVNGMLL 198
Score = 41.6 bits (96), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATA 156
+Y L +N+ + +RA FE GT+ ++ K ++G FV SPDEAT
Sbjct: 325 KYQGVNLYVKNLEDDVDDDKLRAEFEPFGTITSCKVMSDEKGSSKGFGFVCFSSPDEATK 384
Query: 157 ALNNLESYEFEGRTLKVNYAKIKK 180
A+ + + + L V+ A+ ++
Sbjct: 385 AIAEMNNKMIGSKPLYVSLAQRRE 408
>gi|195338791|ref|XP_002036007.1| GM16252 [Drosophila sechellia]
gi|195577167|ref|XP_002078444.1| Hrb27C [Drosophila simulans]
gi|194129887|gb|EDW51930.1| GM16252 [Drosophila sechellia]
gi|194190453|gb|EDX04029.1| Hrb27C [Drosophila simulans]
Length = 421
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 71/157 (45%), Gaps = 8/157 (5%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSPDEA 154
EE + +L + W +T E++ F + G ++D + + + R+RG FVT P
Sbjct: 2 EEDERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNV 61
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
L N + +GRT+ K NP +PK + +F+ L DLR F
Sbjct: 62 NHVLQN-GPHTLDGRTIDP-----KPCNPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTF 115
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAE 251
F G V +++ ++S G+GF+SF+ + E
Sbjct: 116 FGRYG-KVTEVVIMYDQEKKKSRGFGFLSFEEESSVE 151
>gi|326516828|dbj|BAJ96406.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 744
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 78/166 (46%), Gaps = 11/166 (6%)
Query: 106 QNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYE 165
+N+ T+T +D++ +F + GT+ + + R++ FV SPDEA A+ +L +
Sbjct: 309 KNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLNGKK 368
Query: 166 FE------GRTLKVNYAKIKKKNPFPP---VQPKPFATFNLFIANLSFEARAKDLREFFI 216
F GR K + +++ K F + NL++ NL + LRE F
Sbjct: 369 FSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKLRELFA 428
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
G +++ + D+ S G GFV+FKS A A++ K++
Sbjct: 429 EFG--TITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMNNKMV 472
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 66/144 (45%), Gaps = 10/144 (6%)
Query: 120 LFEQHGTVLDIELSMHSKNRNR-GLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178
+F Q G V+ + + +R G A+V +P +A AL L GR +++ Y+
Sbjct: 144 VFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEMLNFTPINGRPIRIMYS-- 201
Query: 179 KKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAG 238
N P + + T N+FI NL K L + F G +++S +V D S G
Sbjct: 202 ---NRDPSL--RKSGTANIFIKNLDKSIDNKALHDTFCVFG-NILSCKVA-TDPAGESKG 254
Query: 239 YGFVSFKSKKVAETAISAFQGKVI 262
YGFV ++ + A AI G ++
Sbjct: 255 YGFVQYERDEAAHAAIEKLNGMLM 278
Score = 43.9 bits (102), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 45/91 (49%)
Query: 90 NTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMG 149
N ++ ++Y T L +N+ T E +R LF + GT+ ++ S +RG FV
Sbjct: 396 NLQEAADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFK 455
Query: 150 SPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
S D+A+ AL + + + L V A+ K+
Sbjct: 456 SADDASRALAEMNNKMVGNKPLYVALAQRKE 486
>gi|429242947|ref|NP_594207.3| RNA-binding protein involved in export of mRNAs (predicted)
[Schizosaccharomyces pombe 972h-]
gi|391358175|sp|Q9P3U1.3|YKX5_SCHPO RecName: Full=Uncharacterized RNA-binding protein C328.05
gi|347834162|emb|CAB96000.3| RNA-binding protein involved in export of mRNAs (predicted)
[Schizosaccharomyces pombe]
Length = 464
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 89/215 (41%), Gaps = 51/215 (23%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNL 161
+L N+P+ +D++ LF Q G+V+ ++ M+ + R+RG+ V M S EA A+ L
Sbjct: 180 QLFVGNLPYNVRWQDLKDLFRQAGSVIRADIQMNQEGRSRGIGIVVMSSMKEAMHAIQML 239
Query: 162 ESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFN------------------------- 196
+ +F GRTL+V + F + KP++T
Sbjct: 240 HNTDFMGRTLEVRLDR------FAHHKSKPYSTHGNGYTFPAEMQMTTSSTYLPMLGANT 293
Query: 197 ------------------LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAG 238
+++ NL + ++L + F G V+ A + + RS G
Sbjct: 294 QVEDLVYHAYPHGPCSDCIYVGNLPWATSDRNLLDLFTDIG-SVIRARIAYEPT-GRSKG 351
Query: 239 YGFVSFKSKKVAETAISAFQGKVIMCLVIALSYLY 273
+G V F+++ A ++I G + LSY +
Sbjct: 352 FGVVQFENENDAASSIEKLNGYRYGGRPLQLSYAH 386
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEF 166
N+PW ++ ++ LF G+V+ ++ R++G V + ++A +++ L Y +
Sbjct: 316 NLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLNGYRY 375
Query: 167 EGRTLKVNYAKIKKKNPFPPV 187
GR L+++YA P P V
Sbjct: 376 GGRPLQLSYAHY--ATPLPAV 394
Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 73/171 (42%), Gaps = 12/171 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNL 161
R+ N+ + +++ Q G VL+ E+ ++G A + + +EA A+ L
Sbjct: 78 RVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEARTAIKTL 137
Query: 162 ESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFN---------LFIANLSFEARAKDLR 212
+ +F GR + + + ++ F P A+ N LF+ NL + R +DL+
Sbjct: 138 SNQKFMGRLVYIREDR-EQNARFGSSSVSPSASSNGKDSEPDRQLFVGNLPYNVRWQDLK 196
Query: 213 EFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
+ F G V+ A++ + RS G G V S K A AI M
Sbjct: 197 DLFRQAG-SVIRADIQMNQE-GRSRGIGIVVMSSMKEAMHAIQMLHNTDFM 245
>gi|194862724|ref|XP_001970091.1| GG10443 [Drosophila erecta]
gi|195471631|ref|XP_002088106.1| GE14209 [Drosophila yakuba]
gi|190661958|gb|EDV59150.1| GG10443 [Drosophila erecta]
gi|194174207|gb|EDW87818.1| GE14209 [Drosophila yakuba]
Length = 421
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 71/157 (45%), Gaps = 8/157 (5%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSPDEA 154
EE + +L + W +T E++ F + G ++D + + + R+RG FVT P
Sbjct: 2 EEDERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNV 61
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
L N + +GRT+ K NP +PK + +F+ L DLR F
Sbjct: 62 NHVLQN-GPHTLDGRTIDP-----KPCNPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTF 115
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAE 251
F G V +++ ++S G+GF+SF+ + E
Sbjct: 116 FGRYG-KVTEVVIMYDQEKKKSRGFGFLSFEEESSVE 151
>gi|242006645|ref|XP_002424159.1| Heterogeneous nuclear ribonucleoprotein 27C, putative [Pediculus
humanus corporis]
gi|212507484|gb|EEB11421.1| Heterogeneous nuclear ribonucleoprotein 27C, putative [Pediculus
humanus corporis]
Length = 423
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 75/161 (46%), Gaps = 19/161 (11%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
+L + W +T E ++ F ++G V+D + +++ R+RG FVT P L N
Sbjct: 20 KLFVGGLSWETTQEALQRYFSRYGDVVDCVVMKNTESGRSRGFGFVTFADPTNVGVVLQN 79
Query: 161 LESYEFEGRTLK------VNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
+ +GRT+ +K K+ N +P V F+ L DLR+F
Sbjct: 80 -GPHVLDGRTIDPKPCNPRTLSKPKRNNGYPKV----------FLGGLPSNVTETDLRQF 128
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
F+ G V+ +++ ++S G+GF+SF+ + E ++
Sbjct: 129 FMRYG-KVMEVVIMYDQEKKKSRGFGFLSFEDEDAVERCVA 168
>gi|171909603|ref|ZP_02925073.1| RNA-binding region RNP-1 [Verrucomicrobium spinosum DSM 4136]
Length = 100
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIEL-SMHSKNRNRGLAFVTMGSPDEATAALN 159
T++ N+PWT+T +D+R+LF HG V ++ + + + R RG AFVTM S D A+
Sbjct: 3 TKMYVGNLPWTATEDDVRSLFSAHGEVREVNMPTDRTSGRPRGFAFVTMDSADAMQGAIR 62
Query: 160 NLESYEFEGRTLKVNYAKIKKKNP 183
L E+ R L+V+ A+ + P
Sbjct: 63 ALGGKEWMQRKLEVSEARPRTDRP 86
>gi|50261759|gb|AAT72460.1| FCA gamma protein [Lolium perenne]
Length = 668
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 83/166 (50%), Gaps = 13/166 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
+L VP ++ +D+R L E+HG VL++ L K + FV + + A A+
Sbjct: 53 KLFVGTVPRIASEDDVRHLSEEHGDVLEVALIRDKKTGEQQECCFVKYATSEGAKRAIRA 112
Query: 161 LES-YEFEGRT--LKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
L + Y G ++V YA +K+ ++ K LF+A+L+ +A AK++ E F
Sbjct: 113 LHNQYTIPGAMGPVEVRYADCEKER-LGSIEHK------LFVASLNKQATAKEIEEIFSP 165
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
G V I D R+S G GFV F SK+ A +A+++ G IM
Sbjct: 166 FGH--VEDVYIMKDGTRQSRGCGFVEFSSKEPALSAVNSLSGTYIM 209
>gi|125984017|ref|XP_001355773.1| GA10287 [Drosophila pseudoobscura pseudoobscura]
gi|54644090|gb|EAL32832.1| GA10287 [Drosophila pseudoobscura pseudoobscura]
Length = 421
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 71/157 (45%), Gaps = 8/157 (5%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSPDEA 154
EE + +L + W +T E++ F + G ++D + + + R+RG FVT P
Sbjct: 2 EEDERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNV 61
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
L N + +GRT+ K NP +PK + +F+ L DLR F
Sbjct: 62 NHVLQN-GPHTLDGRTIDP-----KPCNPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTF 115
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAE 251
F G V +++ ++S G+GF+SF+ + E
Sbjct: 116 FGRYG-KVTEVVIMYDQEKKKSRGFGFLSFEEESSVE 151
>gi|340719920|ref|XP_003398392.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Bombus
terrestris]
Length = 609
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 89/182 (48%), Gaps = 15/182 (8%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N T + ++ +FE++GT+ ++ + ++RG FV PD A A+
Sbjct: 171 TNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLE 230
Query: 161 LESYEF-EGRTLKVNYAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKD 210
L E EG+ + V A+ K K F ++ + + NL++ NL +
Sbjct: 231 LNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVNLYVKNLDDSIDDER 290
Query: 211 LREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIA 268
LR+ F G + SA+V+ + RS G+GFV F + + A A++ G++I+ L +A
Sbjct: 291 LRKEFAPFGT-ITSAKVMMEEG--RSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVA 347
Query: 269 LS 270
L+
Sbjct: 348 LA 349
Score = 43.9 bits (102), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 74/155 (47%), Gaps = 15/155 (9%)
Query: 114 HEDIR--ALFEQ---HGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFE 167
H DI LFE+ G VL I + R+ G A+V P +A AL+ + +
Sbjct: 19 HSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDMIK 78
Query: 168 GRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEV 227
GR +++ +++ ++P + N+FI NL K + + F + G +++S +V
Sbjct: 79 GRPIRIMWSQ---RDP----SLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFG-NILSCKV 130
Query: 228 IFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
D S GYGFV F++++ A +I G ++
Sbjct: 131 A-QDESGVSKGYGFVHFETEEAANKSIDRVNGMLL 164
>gi|332019507|gb|EGI59986.1| Heterogeneous nuclear ribonucleoprotein 27C [Acromyrmex echinatior]
Length = 340
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 77/156 (49%), Gaps = 9/156 (5%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
+L + W +T E+++ F ++G V+D + +S+ R+RG FVT P + L N
Sbjct: 1 KLFVGGLSWETTQENLQRYFGRYGEVIDCVVMKNSESGRSRGFGFVTFSDPANVSLVLQN 60
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF-NLFIANLSFEARAKDLREFFISEG 219
++ +GRT+ K NP +PK F +F+ L DLR +F G
Sbjct: 61 -GPHQLDGRTIDP-----KPCNPRTLQKPKRSGGFPKVFLGGLPSNVTETDLRSYFTRFG 114
Query: 220 WDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
V+ +++ ++S G+GF+SF+ ++ + ++
Sbjct: 115 -KVMEVVIMYDQEKKKSRGFGFLSFEDEEAVDRCVA 149
>gi|406993247|gb|EKE12437.1| Glycine-rich RNA-binding protein GRP1A [uncultured bacterium]
Length = 86
Score = 63.9 bits (154), Expect = 6e-08, Method: Composition-based stats.
Identities = 33/92 (35%), Positives = 51/92 (55%), Gaps = 9/92 (9%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVTMGSPDEATAAL 158
+++L N+ W T ED++ALF G+V+D ++ R+RG FVTMGS EA A+
Sbjct: 2 QSKLFVGNLAWEVTVEDLKALFAGAGSVVDAAVITDRMTGRSRGFGFVTMGSDAEAQTAV 61
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNPFPPVQPK 190
Y+ +GR L VN A+ P++P+
Sbjct: 62 EKFNQYDLKGRKLNVNVAR--------PMEPR 85
Score = 46.2 bits (108), Expect = 0.015, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
LF+ NL++E +DL+ F G VV A VI RS G+GFV+ S A+TA+
Sbjct: 5 LFVGNLAWEVTVEDLKALFAGAG-SVVDAAVITDRMTGRSRGFGFVTMGSDAEAQTAVEK 63
Query: 257 F 257
F
Sbjct: 64 F 64
>gi|66804019|gb|AAY56658.1| heterogeneous nuclear ribonucleoprotein [Drosophila simulans]
Length = 421
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 71/157 (45%), Gaps = 8/157 (5%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSPDEA 154
EE + +L + W +T E++ F + G ++D + + + R+RG FVT P
Sbjct: 2 EEDERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNV 61
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
L N + +GRT+ K NP +PK + +F+ L DLR F
Sbjct: 62 NHVLQN-GPHTLDGRTIDP-----KPCNPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTF 115
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAE 251
F G V +++ ++S G+GF+SF+ + E
Sbjct: 116 FGRYG-KVTEVVIMYDQEKKKSRGFGFLSFEEESSVE 151
>gi|398018793|ref|XP_003862561.1| RNA-binding protein, putative [Leishmania donovani]
gi|322500791|emb|CBZ35868.1| RNA-binding protein, putative [Leishmania donovani]
Length = 639
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 80/173 (46%), Gaps = 17/173 (9%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIEL--SMHSKNRNRGLAFVTMGSPDEATA 156
S+T L + + T +D+R LFEQ+GT++ L +H+ + G AFV + DEA A
Sbjct: 64 SQTNLFVRKLASAVTEDDMRKLFEQYGTIMSFALMRDIHT-GESLGTAFVRYSTHDEARA 122
Query: 157 ALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFI 216
A+ L+ E GR + + +A K+++ P LF+ N+ + A+ LR+ F
Sbjct: 123 AMAALDGRELYGRPISIQWA--KREHDSTPCGDARRKIHKLFVRNIPLDVTARHLRQIFS 180
Query: 217 SEG--------WDVVSAEVIFHDNPRRSA----GYGFVSFKSKKVAETAISAF 257
G D A + + R A F+ F+ VAE A+SA
Sbjct: 181 KFGSISNVTLHSDTAPAATRDNGDSSRPASQMRNIAFILFQDDDVAEQAVSAL 233
>gi|17136728|ref|NP_476869.1| heterogeneous nuclear ribonucleoprotein at 27C, isoform A
[Drosophila melanogaster]
gi|24582366|ref|NP_723228.1| heterogeneous nuclear ribonucleoprotein at 27C, isoform B
[Drosophila melanogaster]
gi|24582368|ref|NP_723229.1| heterogeneous nuclear ribonucleoprotein at 27C, isoform C
[Drosophila melanogaster]
gi|281364530|ref|NP_001162897.1| heterogeneous nuclear ribonucleoprotein at 27C, isoform D
[Drosophila melanogaster]
gi|281364532|ref|NP_001162898.1| heterogeneous nuclear ribonucleoprotein at 27C, isoform E
[Drosophila melanogaster]
gi|386769237|ref|NP_001245917.1| heterogeneous nuclear ribonucleoprotein at 27C, isoform F
[Drosophila melanogaster]
gi|386769239|ref|NP_001245918.1| heterogeneous nuclear ribonucleoprotein at 27C, isoform G
[Drosophila melanogaster]
gi|386769241|ref|NP_001245919.1| heterogeneous nuclear ribonucleoprotein at 27C, isoform H
[Drosophila melanogaster]
gi|76803817|sp|P48809.2|RB27C_DROME RecName: Full=Heterogeneous nuclear ribonucleoprotein 27C;
Short=Hrb27-C; AltName: Full=HRP48.1; AltName:
Full=hnRNP 48
gi|7297190|gb|AAF52456.1| heterogeneous nuclear ribonucleoprotein at 27C, isoform A
[Drosophila melanogaster]
gi|7297191|gb|AAF52457.1| heterogeneous nuclear ribonucleoprotein at 27C, isoform B
[Drosophila melanogaster]
gi|17862734|gb|AAL39844.1| LD46853p [Drosophila melanogaster]
gi|21711665|gb|AAM75023.1| GH26816p [Drosophila melanogaster]
gi|22945819|gb|AAN10605.1| heterogeneous nuclear ribonucleoprotein at 27C, isoform C
[Drosophila melanogaster]
gi|66804007|gb|AAY56657.1| heterogeneous nuclear ribonucleoprotein [Drosophila melanogaster]
gi|272406922|gb|ACZ94188.1| heterogeneous nuclear ribonucleoprotein at 27C, isoform D
[Drosophila melanogaster]
gi|272406923|gb|ACZ94189.1| heterogeneous nuclear ribonucleoprotein at 27C, isoform E
[Drosophila melanogaster]
gi|383291369|gb|AFH03591.1| heterogeneous nuclear ribonucleoprotein at 27C, isoform F
[Drosophila melanogaster]
gi|383291370|gb|AFH03592.1| heterogeneous nuclear ribonucleoprotein at 27C, isoform G
[Drosophila melanogaster]
gi|383291371|gb|AFH03593.1| heterogeneous nuclear ribonucleoprotein at 27C, isoform H
[Drosophila melanogaster]
Length = 421
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 71/157 (45%), Gaps = 8/157 (5%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSPDEA 154
EE + +L + W +T E++ F + G ++D + + + R+RG FVT P
Sbjct: 2 EEDERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNV 61
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
L N + +GRT+ K NP +PK + +F+ L DLR F
Sbjct: 62 NHVLQN-GPHTLDGRTIDP-----KPCNPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTF 115
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAE 251
F G V +++ ++S G+GF+SF+ + E
Sbjct: 116 FNRYG-KVTEVVIMYDQEKKKSRGFGFLSFEEESSVE 151
>gi|11042|emb|CAA44505.1| hrp48.1 [Drosophila melanogaster]
Length = 385
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 71/157 (45%), Gaps = 8/157 (5%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSPDEA 154
EE + +L + W +T E++ F + G ++D + + + R+RG FVT P
Sbjct: 2 EEDERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNV 61
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
L N + +GRT+ K NP +PK + +F+ L DLR F
Sbjct: 62 NHVLQN-GPHTLDGRTIDP-----KPCNPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTF 115
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAE 251
F G V +++ ++S G+GF+SF+ + E
Sbjct: 116 FNRYG-KVTEVVIMYDQEKKKSRGFGFLSFEEESSVE 151
>gi|195438186|ref|XP_002067018.1| GK24781 [Drosophila willistoni]
gi|194163103|gb|EDW78004.1| GK24781 [Drosophila willistoni]
Length = 422
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 71/157 (45%), Gaps = 8/157 (5%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSPDEA 154
EE + +L + W +T E++ F + G ++D + + + R+RG FVT P
Sbjct: 2 EEDERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNV 61
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
L N + +GRT+ K NP +PK + +F+ L DLR F
Sbjct: 62 NHVLQN-GPHTLDGRTIDP-----KPCNPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTF 115
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAE 251
F G V +++ ++S G+GF+SF+ + E
Sbjct: 116 FGRYG-KVTEVVIMYDQEKKKSRGFGFLSFEEESSVE 151
>gi|302892801|ref|XP_003045282.1| hypothetical protein NECHADRAFT_43518 [Nectria haematococca mpVI
77-13-4]
gi|256726207|gb|EEU39569.1| hypothetical protein NECHADRAFT_43518 [Nectria haematococca mpVI
77-13-4]
Length = 718
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 102/219 (46%), Gaps = 29/219 (13%)
Query: 71 HFSATTQDP--FVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVL 128
H A DP F D + A +T++ E ++ L +++P ++T+E + F QH V
Sbjct: 12 HAEADDLDPASFEDRDNGAVQSTKRARVEERRS-LFVRSLPPSATNETLTDFFSQHYPVK 70
Query: 129 DIELSMHSKNR-NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPF--- 184
+ + K + +RG FVT D+AT A L + E++GR L++ A+ + +N
Sbjct: 71 HATVVVDQKTKESRGYGFVTFADADDATEAKKALHNQEWDGRRLRIEIAEPRHRNSATGE 130
Query: 185 --------PPVQPKPFATFNLFIANLSFEAR-AKDLREFFISEGWDVVSAEVIFHDNPRR 235
+Q P L I NL + + ++ L F S G ++ F D P+
Sbjct: 131 VSANKARKEELQKPP----KLIIRNLPWSIKTSEQLSNLFRSFG------KIKFADLPQS 180
Query: 236 SA---GYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271
G+GF++ + KK AE A+ A GK I +A+ +
Sbjct: 181 QGKLKGFGFITIRGKKNAEKALEAINGKEIDGRTLAVDW 219
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Query: 83 SSSAAAVNTEQREEEYSKTRLVAQNVPWT-STHEDIRALFEQHGTVLDIELSMHSKNRNR 141
++ + N ++EE +L+ +N+PW+ T E + LF G + +L S+ + +
Sbjct: 127 ATGEVSANKARKEELQKPPKLIIRNLPWSIKTSEQLSNLFRSFGKIKFADLP-QSQGKLK 185
Query: 142 GLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176
G F+T+ A AL + E +GRTL V++A
Sbjct: 186 GFGFITIRGKKNAEKALEAINGKEIDGRTLAVDWA 220
>gi|212704871|ref|ZP_03312999.1| hypothetical protein DESPIG_02938 [Desulfovibrio piger ATCC 29098]
gi|212671713|gb|EEB32196.1| hypothetical protein DESPIG_02938 [Desulfovibrio piger ATCC 29098]
Length = 88
Score = 63.9 bits (154), Expect = 7e-08, Method: Composition-based stats.
Identities = 36/81 (44%), Positives = 49/81 (60%), Gaps = 4/81 (4%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIEL-SMHSKNRNRGLAFVTMGSPDEATAALNNLESYE 165
N+PW +T E ++ LF ++G VL ++L S R RG FV M EA AA+ L++Y
Sbjct: 9 NLPWAATEEQVQDLFAEYGKVLSVKLVSDRETGRARGFGFVEM-EDGEAQAAIEALDNYS 67
Query: 166 FEGRTLKVNYAKIKKKNPFPP 186
F GRTL+VN A K + P PP
Sbjct: 68 FGGRTLRVNEA--KPRAPRPP 86
>gi|198386356|ref|NP_001094008.1| polyadenylate-binding protein 4 [Rattus norvegicus]
gi|183985833|gb|AAI66452.1| Pabpc4 protein [Rattus norvegicus]
Length = 644
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 83/167 (49%), Gaps = 14/167 (8%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E++R LF Q G L +++ +++G FV+ ++A A+ + E G+++ V
Sbjct: 205 ENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIALS 270
+V+ D RS G+GFV F S + A A++ G+++ L +AL+
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
>gi|241953527|ref|XP_002419485.1| poly uridylate-binding protein, putative; poly(A)+ RNA-binding
protein, putative [Candida dubliniensis CD36]
gi|223642825|emb|CAX43080.1| poly uridylate-binding protein, putative [Candida dubliniensis
CD36]
Length = 497
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 88/194 (45%), Gaps = 9/194 (4%)
Query: 82 DSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNR 141
D A + ++ E S L N+P +++ E I+ LF G + ++ KN+
Sbjct: 51 DEKQVNAASAKEGGREVSNKILYVGNLPKSASEEMIQELFSVDGNPVKTIKVLNDKNKAG 110
Query: 142 -GLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA---KIKKKNPFPPVQPKPFATFNL 197
AF+ + + A ALN L + +KVN+A NP +P FN+
Sbjct: 111 FNYAFIEYDTNEAADMALNTLNGRLVDNVEIKVNWAFQSAAIAGNPNNTEEP----LFNI 166
Query: 198 FIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAF 257
F+ +LS E + LR F S+ + A V++ RS GYGFV+F ++ AE A+
Sbjct: 167 FVGDLSPEVNDEGLRNAF-SKFESLKQAHVMWDMQTSRSRGYGFVTFGNQSDAELALQTM 225
Query: 258 QGKVIMCLVIALSY 271
G+ + I ++
Sbjct: 226 NGEWLCGRAIRCNW 239
>gi|149023879|gb|EDL80376.1| rCG31475, isoform CRA_b [Rattus norvegicus]
Length = 656
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 83/167 (49%), Gaps = 14/167 (8%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E++R LF Q G L +++ +++G FV+ ++A A+ + E G+++ V
Sbjct: 205 ENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIALS 270
+V+ D RS G+GFV F S + A A++ G+++ L +AL+
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
>gi|45201486|ref|NP_987056.1| AGR390Cp [Ashbya gossypii ATCC 10895]
gi|44986420|gb|AAS54880.1| AGR390Cp [Ashbya gossypii ATCC 10895]
gi|374110307|gb|AEY99212.1| FAGR390Cp [Ashbya gossypii FDAG1]
Length = 378
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 79/175 (45%), Gaps = 8/175 (4%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATA 156
E S L N+ T ++ F+ G + ++++ + N AFV P +A
Sbjct: 31 ETSDRILYVGNLDKTINEATLKQYFQVGGPIANVKVLVDKNNEEANYAFVEYRQPRDANV 90
Query: 157 ALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFI 216
A L+ + E +K+N+A F Q TFNLF+ +L+ + + L F
Sbjct: 91 AFQTLDGKQIENNVIKINWA-------FQSQQVSSDDTFNLFVGDLNVDVDDETLSSTF- 142
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271
E + A V++ RS GYGFVSF ++ A+ A+ A QG + I +++
Sbjct: 143 KEFPTFIQAHVMWDMQSGRSRGYGFVSFGEQEEAQKAMDAKQGFNLNGRAIRVNW 197
>gi|347734520|ref|ZP_08867565.1| ss-DNA binding protein 12RNP2 [Desulfovibrio sp. A2]
gi|347516846|gb|EGY24046.1| ss-DNA binding protein 12RNP2 [Desulfovibrio sp. A2]
Length = 88
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 51/85 (60%), Gaps = 4/85 (4%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIEL-SMHSKNRNRGLAFVTMGSPDEATAALNNL 161
L N+P++++ ++IR LF QHG VL ++L S R RG FV M + D A++A+ L
Sbjct: 5 LYVGNLPFSASEDEIRDLFSQHGQVLSVKLISDRETGRPRGFGFVEMEAAD-ASSAVEAL 63
Query: 162 ESYEFEGRTLKVNYAKIKKKNPFPP 186
Y F GR LKVN A + + P PP
Sbjct: 64 NGYSFGGRALKVNEA--QPRAPRPP 86
>gi|295665468|ref|XP_002793285.1| nucleic acid-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226278199|gb|EEH33765.1| nucleic acid-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 273
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 71/159 (44%), Gaps = 3/159 (1%)
Query: 113 THEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
T +D++ + G +L + + ++ +RG A+V S D A AA+ + +EGR +
Sbjct: 95 TADDLKRDMSKFGNILAVRIVYDNRGMSRGFAYVQFDSVDAAEAAIAEMNMTIYEGRRVV 154
Query: 173 VNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDN 232
VNY+ NP P +P T LFI NLSFE ++L E F + +V V
Sbjct: 155 VNYSSRGSANPTPTRSNEP--TRTLFIGNLSFEMTDRELNELF-KDIKNVTDVRVSVDRR 211
Query: 233 PRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271
+ G+ F + A+ A + K + L Y
Sbjct: 212 TGQPRGFAHADFLDVESAQAAFEILKDKAPYGRPLRLDY 250
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 4/93 (4%)
Query: 181 KNPFPPVQPKPFATFN--LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAG 238
+N P +P P N ++I NL FE A DL+ +S+ ++++ +++ DN S G
Sbjct: 67 RNDVPISRPAPDVRPNETIYIGNLFFEVTADDLKR-DMSKFGNILAVRIVY-DNRGMSRG 124
Query: 239 YGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271
+ +V F S AE AI+ + + ++Y
Sbjct: 125 FAYVQFDSVDAAEAAIAEMNMTIYEGRRVVVNY 157
>gi|345315973|ref|XP_001509329.2| PREDICTED: nucleolin-like, partial [Ornithorhynchus anatinus]
Length = 638
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 75/146 (51%), Gaps = 11/146 (7%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAAL 158
SKT +V N+ +++T E ++ +FE+ I++ + + R +G AFV +P+EA AL
Sbjct: 435 SKT-IVVNNLAYSATEEGLQEVFEK---ATSIKVPQNHQGRPKGYAFVEFSTPEEAKEAL 490
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISE 218
N+L + E EGRT+++ K N PF T LF+ LS E + L+E F
Sbjct: 491 NSLNNVEIEGRTIRLEMQGSKNTNARGGFS-HPFKT--LFVKGLSEETTEETLKESFDGS 547
Query: 219 GWDVVSAEVIFHDNPRRSAGYGFVSF 244
V A ++ S G+GFV F
Sbjct: 548 ----VRARIVTDRETGSSKGFGFVDF 569
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 80/171 (46%), Gaps = 12/171 (7%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLE 162
L +N+P+ T E+++ +FE +D+ L ++G+A++ + +A AL +
Sbjct: 343 LFVKNLPYKVTQEEMKEVFED---AVDVRLVTGKDGMSKGIAYIEFKTEADADKALEEKQ 399
Query: 163 SYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA----TFNLFIANLSFEARAKDLREFFISE 218
E +GR++ ++Y K + K A + + + NL++ A + L+E F
Sbjct: 400 GTEIDGRSIILDYTGEKSQGLENSRGGKNNAWSGESKTIVVNNLAYSATEEGLQEVF--- 456
Query: 219 GWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIAL 269
+ ++ + ++ R GY FV F + + A+ A+++ I I L
Sbjct: 457 --EKATSIKVPQNHQGRPKGYAFVEFSTPEEAKEALNSLNNVEIEGRTIRL 505
>gi|195052284|ref|XP_001993272.1| GH13720 [Drosophila grimshawi]
gi|193900331|gb|EDV99197.1| GH13720 [Drosophila grimshawi]
Length = 421
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 71/157 (45%), Gaps = 8/157 (5%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSPDEA 154
EE + +L + W +T E++ F + G ++D + + + R+RG FVT P
Sbjct: 2 EEDERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPANV 61
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
L N + +GRT+ K NP +PK + +F+ L DLR F
Sbjct: 62 NHVLQN-GPHTLDGRTIDP-----KPCNPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTF 115
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAE 251
F G V +++ ++S G+GF+SF+ + E
Sbjct: 116 FGRYG-KVTEVVIMYDQEKKKSRGFGFLSFEEESSVE 151
>gi|116191833|ref|XP_001221729.1| hypothetical protein CHGG_05634 [Chaetomium globosum CBS 148.51]
gi|88181547|gb|EAQ89015.1| hypothetical protein CHGG_05634 [Chaetomium globosum CBS 148.51]
Length = 792
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 91/195 (46%), Gaps = 28/195 (14%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR-NRGLAFVTMGSPDEATAA 157
S +L +++P +T E + F QH V + + K + +RG FV+ PD+A A
Sbjct: 38 SNRQLFVRSLPPNATSESLTEFFSQHYPVKHATVVVDPKTKFSRGYGFVSFADPDDAAEA 97
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFP----------PVQPKPFATF-------NLFIA 200
+ L++ F GR LK++ A+ + +NP V+ K A L I
Sbjct: 98 KDKLKNELFSGRRLKLDIAQSRHRNPTKSGSEALTKAAEVKRKRQADLEEARKAPKLIIR 157
Query: 201 NLSFEARAKD-LREFFISEGWDVVSAEVIFHD---NPRRSAGYGFVSFKSKKVAETAISA 256
NL + + D L + F S G +V F D N + +G+GFV+ + +K AE AI A
Sbjct: 158 NLPWSIKTSDQLAKLFQSFG------KVKFSDLPNNKGKLSGFGFVTLRGRKNAEKAIEA 211
Query: 257 FQGKVIMCLVIALSY 271
GK + +A+ +
Sbjct: 212 INGKEVDGRTLAVDW 226
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 95 EEEYSKTRLVAQNVPWT-STHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDE 153
EE +L+ +N+PW+ T + + LF+ G V +L ++K + G FVT+
Sbjct: 146 EEARKAPKLIIRNLPWSIKTSDQLAKLFQSFGKVKFSDLP-NNKGKLSGFGFVTLRGRKN 204
Query: 154 ATAALNNLESYEFEGRTLKVNYA 176
A A+ + E +GRTL V++A
Sbjct: 205 AEKAIEAINGKEVDGRTLAVDWA 227
>gi|149023878|gb|EDL80375.1| rCG31475, isoform CRA_a [Rattus norvegicus]
Length = 660
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 83/167 (49%), Gaps = 14/167 (8%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E++R LF Q G L +++ +++G FV+ ++A A+ + E G+++ V
Sbjct: 205 ENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIALS 270
+V+ D RS G+GFV F S + A A++ G+++ L +AL+
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
>gi|224062834|ref|XP_002300896.1| predicted protein [Populus trichocarpa]
gi|222842622|gb|EEE80169.1| predicted protein [Populus trichocarpa]
Length = 648
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 78/171 (45%), Gaps = 11/171 (6%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N+ T++ ED++ +F +G + + ++RG FV SPD A AA+
Sbjct: 212 TNVYVKNLSETTSDEDLKKIFSSYGAITSAIVMKDQNGKSRGFGFVNFQSPDSAAAAVEK 271
Query: 161 LESYEFEGRTLKVNYAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDL 211
L F + V A+ K K F + + NL++ NL + L
Sbjct: 272 LNGMTFSDKVWYVGRAQRKGEREAELKAKFEQERNSRYEKMKAANLYLKNLGDTIDEERL 331
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
+E F SE + S +V+ D S G GFV+F + + A A+S GK+I
Sbjct: 332 KELF-SEFGSITSCKVML-DQQGLSKGSGFVAFSTPEEASRALSEMNGKMI 380
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 63/121 (52%), Gaps = 9/121 (7%)
Query: 142 GLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIAN 201
G A+V +P +A A+ L G+ +++ ++ ++P + N+FI N
Sbjct: 75 GYAYVNFSNPQDAAKAMEVLNFTPLNGKPIRIMFSH---RDP----TTRRSGHANVFIKN 127
Query: 202 LSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKV 261
L + K L E F S G V+S +V DN +S GYGF+ F++++ A++AI+ G +
Sbjct: 128 LDTKIDNKALYETFASFG-PVLSCKVAV-DNNGQSKGYGFIQFENEEDAQSAINRLNGML 185
Query: 262 I 262
+
Sbjct: 186 V 186
>gi|171912058|ref|ZP_02927528.1| RNA-binding region RNP-1 [Verrucomicrobium spinosum DSM 4136]
Length = 150
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIEL-SMHSKNRNRGLAFVTMGSPDEATAALN 159
T++ N+ W++T +D+R LF Q+G V ++ L + R RG AFV M + + AA+
Sbjct: 3 TKMYVGNLAWSATEQDVRELFSQYGAVTEVSLPTDRDTGRPRGFAFVAMDTKEAMDAAIK 62
Query: 160 NLESYEFEGRTLKVNYAKIKKKNP 183
L E+ GR L VN A+ +++ P
Sbjct: 63 GLNGLEWMGRALTVNEARPREERP 86
>gi|242782227|ref|XP_002479958.1| electron transfer flavoprotein-ubiquinone oxidoreductase
[Talaromyces stipitatus ATCC 10500]
gi|218720105|gb|EED19524.1| electron transfer flavoprotein-ubiquinone oxidoreductase
[Talaromyces stipitatus ATCC 10500]
Length = 1100
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 76/173 (43%), Gaps = 17/173 (9%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATA 156
E S TRL N+P T +DI F HGT E+ + + G F+ +A
Sbjct: 798 EVSSTRLYLGNLPRNVTKKDIEEYFGSHGTGKITEIKLMN-----GFGFIEYEDAMDARD 852
Query: 157 ALNNLESYEFEGRTLKVNYAKI-KKKNPF-----PPVQPKPFAT-FNLFIANLSFEARAK 209
+ +F+G L V +A+ + K F P P+P T F + ++ L E +
Sbjct: 853 VVPAFHGSDFKGERLTVQFARGPRHKETFNGPSDRPAAPRPRRTVFRMQVSGLPTETSWQ 912
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
DL++F G DVV +E R G GFV F+S +TA+ G+ +
Sbjct: 913 DLKDFARQSGLDVVYSETT-----RERDGRGFVEFESHADLKTAVEKLDGREL 960
>gi|343429355|emb|CBQ72928.1| conserved hypothetical protein [Sporisorium reilianum SRZ2]
Length = 1168
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 6/121 (4%)
Query: 55 AYTFPITP--KKVSPFVFHFSATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTS 112
A T I+P ++ SP + S DP + + SA+A T +T+L+ N+P+
Sbjct: 56 ATTDTISPLQQQPSPLAANLS----DPLLANPSASAPTTGPLSASDPRTQLLVSNLPYRV 111
Query: 113 THEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
+D++ LF + GTVL ++S+ NR+RG V M + +A A + L + ++GRTL
Sbjct: 112 RWQDLKDLFRKAGTVLRADVSLSPDNRSRGYGTVLMATEHDAVKAADMLGGFTWQGRTLD 171
Query: 173 V 173
V
Sbjct: 172 V 172
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%)
Query: 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAA 157
Y+ L N+P+ +D++ LF G + ++++ R+RG V S ++A A
Sbjct: 431 YAGRVLFVGNLPFHCQWQDLKDLFRAAGNIQRADVAIGPDGRSRGFGTVLFASQEDAQNA 490
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKN 182
+ YE+ GRTLKV++ + +N
Sbjct: 491 VRLYHGYEYSGRTLKVHFDRFAAQN 515
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 61/135 (45%), Gaps = 10/135 (7%)
Query: 126 TVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFP 185
T+ D M+S+N G + V G P A F G+ + PFP
Sbjct: 371 TINDPTAGMYSQNA--GGSSVPTGFPGAPAMAPWPAGPGSFGGQVTAS-----MQSQPFP 423
Query: 186 PVQPK-PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSF 244
P +A LF+ NL F + +DL++ F + G ++ A+V + RS G+G V F
Sbjct: 424 SQVPTTSYAGRVLFVGNLPFHCQWQDLKDLFRAAG-NIQRADVAIGPD-GRSRGFGTVLF 481
Query: 245 KSKKVAETAISAFQG 259
S++ A+ A+ + G
Sbjct: 482 ASQEDAQNAVRLYHG 496
>gi|223996717|ref|XP_002288032.1| ribonuceoprotein [Thalassiosira pseudonana CCMP1335]
gi|220977148|gb|EED95475.1| ribonuceoprotein [Thalassiosira pseudonana CCMP1335]
Length = 356
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 78/166 (46%), Gaps = 10/166 (6%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
+L VP T ED+ LFE +G +LD+ + + +RG AFVT S ++A +N
Sbjct: 3 KLFVGQVPKTLAEEDLALLFEPYGRILDMTVIRDRRTGTHRGCAFVTYESGEDAMRVVNE 62
Query: 161 LES-YEFEGRT----LKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFF 215
+ Y FEG ++ +I++ + + + LF+ L EA +RE F
Sbjct: 63 MHGKYRFEGAMWPAQVRPAQGEIEEGD---DERDEGDEMAKLFVGQLPREADEDFVRELF 119
Query: 216 ISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKV 261
S G D+ +I N G FV F+ + +A+ AI A G+V
Sbjct: 120 TSYG-DITGIYIIKKRNNEAKNGCAFVKFRERDMAQAAIDALDGEV 164
>gi|322711864|gb|EFZ03437.1| RNA recognition motif containing protein [Metarhizium anisopliae
ARSEF 23]
Length = 731
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 88/182 (48%), Gaps = 19/182 (10%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR-NRGLAFVTMGSPDEATAALNNL 161
L +++P T++ + F QH V + + K + +RG FVT+ D+A AA L
Sbjct: 45 LFVRSLPANVTNDTLADFFSQHFPVKHAVVVVDQKTKESRGYGFVTLADSDDALAAKTTL 104
Query: 162 ESYEFEGRTLKVNYAKIKKKN--------PFPPVQPKPFATFNLFIANLSFEAR-AKDLR 212
+ E+EG+ ++++ A+ +K+N P P + + L + NL + + ++ L
Sbjct: 105 DKAEWEGKRIRIDIAEPRKRNAANSEDTVPKRPGREESQRPPKLIVRNLPWSIKTSEQLS 164
Query: 213 EFFISEGWDVVSAEVIFHDNPRRSA---GYGFVSFKSKKVAETAISAFQGKVIMCLVIAL 269
F S G +V F D P+ G+GFV+ + KK AE A+ GK I +A+
Sbjct: 165 NLFRSYG------KVKFSDLPQSKGKLRGFGFVTIRGKKNAEKALEGVNGKEIDGRTLAV 218
Query: 270 SY 271
+
Sbjct: 219 DW 220
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 94 REEEYSKTRLVAQNVPWT-STHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPD 152
REE +L+ +N+PW+ T E + LF +G V +L SK + RG FVT+
Sbjct: 139 REESQRPPKLIVRNLPWSIKTSEQLSNLFRSYGKVKFSDLP-QSKGKLRGFGFVTIRGKK 197
Query: 153 EATAALNNLESYEFEGRTLKVNYA 176
A AL + E +GRTL V++A
Sbjct: 198 NAEKALEGVNGKEIDGRTLAVDWA 221
>gi|1737492|gb|AAB38974.1| poly(A)-binding protein [Triticum aestivum]
Length = 651
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 77/166 (46%), Gaps = 11/166 (6%)
Query: 106 QNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYE 165
+N+ T+T +D++ +F + G + + + R++ FV SPDEA A+ +L +
Sbjct: 216 KNLAETTTEDDLKEIFGKFGAITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLNGKK 275
Query: 166 FE------GRTLKVNYAKIKKKNPFPP---VQPKPFATFNLFIANLSFEARAKDLREFFI 216
F GR K + +I+ K F + NL++ NL + LRE F
Sbjct: 276 FSDKEWYVGRAQKKSEREIELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKLRELFA 335
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
G +++ + D+ S G GFV+FKS A A++ K++
Sbjct: 336 EFG--TITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMNNKMV 379
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 66/144 (45%), Gaps = 10/144 (6%)
Query: 120 LFEQHGTVLDIELSMHSKNRNR-GLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178
+F Q G V+ + + +R G A+V +P +A AL L GR +++ Y+
Sbjct: 51 VFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEMLNFTPINGRPIRIMYS-- 108
Query: 179 KKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAG 238
N P + + T N+FI NL K L + F G +++S +V D S G
Sbjct: 109 ---NRDPSL--RKSGTANIFIKNLDKSIDNKALYDTFCVFG-NILSCKVA-TDPAGESKG 161
Query: 239 YGFVSFKSKKVAETAISAFQGKVI 262
YGFV ++ + A AI G ++
Sbjct: 162 YGFVQYERDEAAHAAIEKLNGMLM 185
Score = 44.3 bits (103), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 45/91 (49%)
Query: 90 NTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMG 149
N ++ ++Y T L +N+ T E +R LF + GT+ ++ S +RG FV
Sbjct: 303 NLQEAADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFK 362
Query: 150 SPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
S D+A+ AL + + + L V A+ K+
Sbjct: 363 SADDASRALAEMNNKMVGNKPLYVALAQRKE 393
>gi|115384864|ref|XP_001208979.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114196671|gb|EAU38371.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 157
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
Query: 108 VPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEF 166
+ W +T E +RA FE+ GTV + I + R+RG FVT SP EA AALN L + EF
Sbjct: 36 LAWHTTDESLRAGFEKFGTVDNAIVVKDRDTGRSRGFGFVTFTSPQEADAALNELNNQEF 95
Query: 167 EGRTLKVNYA 176
+GR ++V++A
Sbjct: 96 DGRIIRVDFA 105
>gi|146093095|ref|XP_001466659.1| putative RNA-binding protein [Leishmania infantum JPCM5]
gi|134071022|emb|CAM69702.1| putative RNA-binding protein [Leishmania infantum JPCM5]
Length = 639
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 80/173 (46%), Gaps = 17/173 (9%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIEL--SMHSKNRNRGLAFVTMGSPDEATA 156
S+T L + + T +D+R LFEQ+GT++ L +H+ + G AFV + DEA A
Sbjct: 64 SQTNLFVRKLASAVTEDDMRKLFEQYGTIMSFALMRDIHT-GESLGTAFVRYSTHDEARA 122
Query: 157 ALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFI 216
A+ L+ E GR + + +A K+++ P LF+ N+ + A+ LR+ F
Sbjct: 123 AMAALDGRELYGRPISIQWA--KREHDSTPCGDARRKIRKLFVRNIPLDVTARHLRQIFS 180
Query: 217 SEG--------WDVVSAEVIFHDNPRRSA----GYGFVSFKSKKVAETAISAF 257
G D A + + R A F+ F+ VAE A+SA
Sbjct: 181 KFGSISNVTLHSDTAPAATRDNGDSSRPASQMRNIAFILFQDDDVAEQAVSAL 233
>gi|346326093|gb|EGX95689.1| Nucleotide-binding, alpha-beta plait [Cordyceps militaris CM01]
Length = 332
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 84/187 (44%), Gaps = 33/187 (17%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGT--VLDIELSMHSKNRNRGLAFVTMGSPDEA 154
E S TRL N+P +T DI A F HGT + +++L MH G F+ P +A
Sbjct: 4 EVSNTRLYLGNLPPNATKADIEAHFATHGTGEITEVKL-MH------GFGFIEYKDPMDA 56
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPP----------VQPKPFATFN-LFIANLS 203
+ + +F+G L V +A+ + P P+P T + + I L
Sbjct: 57 RDVVPD--GSDFKGTRLTVQFARGPRPREPPGYGAGGAHHERAAPRPRRTIHRMTITGLP 114
Query: 204 FEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA-----FQ 258
E +DL++F G DVV +E R +G GFV +++ TA+ F+
Sbjct: 115 NETSWQDLKDFARQAGPDVVYSETA------RDSGRGFVEYENANDLRTAVEKLDGFEFK 168
Query: 259 GKVIMCL 265
GKV+ C+
Sbjct: 169 GKVVQCI 175
>gi|156360993|ref|XP_001625306.1| predicted protein [Nematostella vectensis]
gi|156212133|gb|EDO33206.1| predicted protein [Nematostella vectensis]
Length = 584
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 81/170 (47%), Gaps = 19/170 (11%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ + + G ++ +++ + +++G FV+ +P+EA A+N L E GR L
Sbjct: 208 EQMKEICAEAGKIVSLKVMTDPEGKSKGFGFVSFETPEEAEEAVNVLNGKEIGGRRLWAG 267
Query: 175 YAK------------IKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDV 222
AK I+KK + F NL+I NL + LRE F G
Sbjct: 268 RAKKRAERAAEVKAEIEKKR---QERINRFQGVNLYIKNLDDPIDDERLREEFSPYG--T 322
Query: 223 VSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIALS 270
+S+ + D+ S G+GFV F S + A A++ G++++ L +AL+
Sbjct: 323 ISSAKVMKDDKGNSKGFGFVCFSSPEEATKAVTEMNGRILISKPLYVALA 372
Score = 41.6 bits (96), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 66/143 (46%), Gaps = 10/143 (6%)
Query: 121 FEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179
F G+VL I + R+ G A+V P A AL+ + +GR ++ + +
Sbjct: 33 FSTAGSVLSIRVCRDLVTRRSLGYAYVNFQQPGHAEKALDTMNFDPIKGRPCRIMW---Q 89
Query: 180 KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+++P + N+FI NL K L + F + G +++S + I D GY
Sbjct: 90 QRDP----SLRKSGVGNIFIKNLDKSIDNKSLYDTFSAFG-NILSCK-IAQDELGNPKGY 143
Query: 240 GFVSFKSKKVAETAISAFQGKVI 262
GFV F+++ A AI+ G ++
Sbjct: 144 GFVHFETEDAALEAIARVDGMLL 166
>gi|427786809|gb|JAA58856.1| Putative rna-binding protein elav/hu rrm superfamily [Rhipicephalus
pulchellus]
Length = 365
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 80/168 (47%), Gaps = 19/168 (11%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEA 154
++ SKT L + + T+T +D+ L +G ++ + + N+ +G FV SP A
Sbjct: 65 DQLSKTNLYIKGLTHTTTDKDLLNLCAPYGNIISTKAILDKDTNKCKGYGFVDFESPLAA 124
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
A+ L++ + ++ AK ++++P NL++ANL +DL +
Sbjct: 125 EKAVKALQA-----QGVQAQMAKQQEQDPT-----------NLYMANLPLYMAEQDLEQL 168
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
+ G V + I DN +S G GF +SK+ E I+ F GKV+
Sbjct: 169 LQAHG--AVISTRILRDNSAQSRGVGFARMESKEKCEQIIATFNGKVL 214
>gi|301119623|ref|XP_002907539.1| nucleolin, putative [Phytophthora infestans T30-4]
gi|262106051|gb|EEY64103.1| nucleolin, putative [Phytophthora infestans T30-4]
Length = 496
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 91/190 (47%), Gaps = 14/190 (7%)
Query: 82 DSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNR 141
++ AAAV Q+ E + +PW++T ++++ F G V + + + R+
Sbjct: 235 ENGDAAAVANPQKTLE-----IFIAGLPWSATEDEVKEHFAGCGEVTGARIPLQN-GRSS 288
Query: 142 GLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIAN 201
G AFVT + + A AAL ++ +F GR +K+ A+ KKN F KP ++FI N
Sbjct: 289 GTAFVTFATSEAAEAALA-MDGQDFGGRWMKIRTAE--KKNMF---DEKPEGCTSVFIGN 342
Query: 202 LSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKV 261
LS++ +RE F E +++S + G+G V F S + + A+ G
Sbjct: 343 LSWDVDENTVRETF-GECGEILSCRLATDRETGEFRGFGHVDFASTEAVDEAVK-LAGSY 400
Query: 262 IMCLVIALSY 271
+ I ++Y
Sbjct: 401 VNGRAIRVNY 410
>gi|452989025|gb|EME88780.1| hypothetical protein MYCFIDRAFT_209897, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 209
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 80/178 (44%), Gaps = 17/178 (9%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAAL 158
S TRL N+P +T D+ F HGT E+ + + G F+ +A +
Sbjct: 18 SNTRLYLGNLPRNATKADVENHFNTHGTGEITEIKLMN-----GFGFIEYKDAMDARDVV 72
Query: 159 NNLESYEFEGRTLKVNYAK--IKKKNPF---PPVQPKPFATFN-LFIANLSFEARAKDLR 212
EF G L V +A+ + + F P + P+P T + + I L FE +DL+
Sbjct: 73 PAFHGSEFMGERLVVQFARGSTRPREGFEHQPRMAPRPRRTIHRMTITGLPFETSWQDLK 132
Query: 213 EFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAI-----SAFQGKVIMCL 265
+F G DVV +EV +P G GFV +++ +A+ S F+G + C+
Sbjct: 133 DFARQSGLDVVYSEVNRERDP-SGTGKGFVEYETAADLASAVEKLDNSEFKGSTVRCI 189
>gi|395548760|ref|XP_003775245.1| PREDICTED: polyadenylate-binding protein 1-like [Sarcophilus
harrisii]
Length = 730
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 84/167 (50%), Gaps = 14/167 (8%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
+ + +FE+ G L +++ R++G FV ++A A++N+ E GR +
Sbjct: 304 DRLSKIFEKFGPTLSVKVMRDDCGRSKGFGFVNFQKHEDAQNAIDNMNGKELNGRQIYAG 363
Query: 175 YAKIKKKNP------FPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K + F ++ + NL+I NL + ++LR+ F S G + SA
Sbjct: 364 RAQKKLERQTQLQRHFEQLKQNRIVRYQGVNLYIKNLDDDIDDENLRKEFSSFG-TITSA 422
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIALS 270
+V+ ++ RS G+GFV F + + A TA++ G+++ L +AL+
Sbjct: 423 KVMMNNG--RSKGFGFVCFSAPEEATTAVTEMNGRLVASKPLYVALA 467
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 75/152 (49%), Gaps = 11/152 (7%)
Query: 121 FEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179
F G +L I + + +R+ G A+V +A + ++ Y +G+ +++ +++
Sbjct: 130 FSPAGPILSIRVCRDAVTHRSLGYAYVNFQHLADAERVMTDMNLYIIKGKPVRLMWSQ-- 187
Query: 180 KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
++P + N+F+ NL K L + F S G +++S +VI DN S GY
Sbjct: 188 -RDP----SLRKSGIGNVFVKNLEKSINNKSLYDAFSSFG-NILSCKVITDDNG--SKGY 239
Query: 240 GFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271
GFV F+ ++ AE AI G ++ L I + +
Sbjct: 240 GFVHFEHRESAERAIQKMNGILLNDLKIFVGH 271
Score = 37.0 bits (84), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 67/156 (42%), Gaps = 6/156 (3%)
Query: 106 QNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYE 165
+N+ + ++ + F G +L ++ + N ++G FV + A A+ +
Sbjct: 203 KNLEKSINNKSLYDAFSSFGNILSCKV-ITDDNGSKGYGFVHFEHRESAERAIQKMNGIL 261
Query: 166 FEGRTLKVNYAKIKK-KNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVS 224
+ V + K +K + Q + F N++I N + L + F E +
Sbjct: 262 LNDLKIFVGHFKSRKDRESELGAQTREFT--NVYIKNFGEDMDEDRLSKIF--EKFGPTL 317
Query: 225 AEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
+ + D+ RS G+GFV+F+ + A+ AI GK
Sbjct: 318 SVKVMRDDCGRSKGFGFVNFQKHEDAQNAIDNMNGK 353
>gi|297743165|emb|CBI36032.3| unnamed protein product [Vitis vinifera]
Length = 476
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 81/182 (44%), Gaps = 12/182 (6%)
Query: 91 TEQRE--EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTM 148
E++E EE T + +N+ T + IR F + G V + + ++RG FV
Sbjct: 195 CERKEASEETKFTNVYVKNLGEDLTEDIIRDKFSEFGKVGTVVIMKDGNGKSRGFGFVNF 254
Query: 149 GSPDEATAALNNLESYEFEGRTLKVNYAK--------IKKKNPFPPVQPKPFATFNLFIA 200
SPDEA A+ L + L V A+ +K + NL++
Sbjct: 255 ESPDEAKKAVEALNGAMLGSKKLFVGRAQKKAERQELLKHEKEMVNCNIGKEKASNLYVK 314
Query: 201 NLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
NL L+E F S G + SA+V+ HD+ S G+GFV F + + A+ A++ G
Sbjct: 315 NLDASVDDDKLQEHFSSCGQ-ITSAKVMRHDSG-LSKGFGFVCFSTSEEAQKALTTLNGT 372
Query: 261 VI 262
++
Sbjct: 373 LL 374
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 76/160 (47%), Gaps = 6/160 (3%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLE 162
L +N+ + ++ +F + G +L +++ +++ FV S D ATAALN L
Sbjct: 119 LFVKNLDPSINSASLQDIFCKFGNILSCKVA-EENGKSKCFGFVQFDSDDSATAALNALN 177
Query: 163 SYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDV 222
+G+ L V+ +KK + F N+++ NL + +R+ F G
Sbjct: 178 DTMLDGKKLFVSKF-VKKCERKEASEETKFT--NVYVKNLGEDLTEDIIRDKFSEFGK-- 232
Query: 223 VSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
V VI D +S G+GFV+F+S A+ A+ A G ++
Sbjct: 233 VGTVVIMKDGNGKSRGFGFVNFESPDEAKKAVEALNGAML 272
>gi|220905282|ref|YP_002480594.1| RNP-1 like RNA-binding protein [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
gi|219869581|gb|ACL49916.1| RNP-1 like RNA-binding protein [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
Length = 88
Score = 63.5 bits (153), Expect = 1e-07, Method: Composition-based stats.
Identities = 35/85 (41%), Positives = 51/85 (60%), Gaps = 7/85 (8%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIEL-SMHSKNRNRGLAFVTMGSPDEATAALNNLESYE 165
N+PW++T E ++ LF ++G VL ++L S R RG FV M EA +A+ L+++
Sbjct: 9 NLPWSATEEQVQDLFAEYGNVLSVKLVSDRDTGRARGFGFVEM-EDGEADSAIEALDNFS 67
Query: 166 FEGRTLKVNYAKIKKKNPFPPVQPK 190
F GRTL+VN AK P P QP+
Sbjct: 68 FGGRTLRVNEAK-----PRAPRQPR 87
>gi|224128049|ref|XP_002320231.1| predicted protein [Populus trichocarpa]
gi|222861004|gb|EEE98546.1| predicted protein [Populus trichocarpa]
Length = 287
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 86/174 (49%), Gaps = 12/174 (6%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR-NRGLAFVTMGS 150
E ++++ L N+P +S D+ +F+ G+VL +E+S + + +RG ++TMGS
Sbjct: 92 ELKKKQAKPCELYVCNLPRSSDIADLVEMFKPFGSVLSVEVSRNPETGVSRGCGYITMGS 151
Query: 151 PDEATAALNNLESYEFEGRTLKVNYA---KIKKKNPFPPVQPKPFATF------NLFIAN 201
+ A A++ L+ + GR ++V Y+ ++NP + P L++ N
Sbjct: 152 VESARNAVSALDGSDVGGREMRVRYSVEISSGRRNP-EALNSAPTKHLFYESPHKLYVGN 210
Query: 202 LSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
L + + +LR F G VVSA V+ ++ Y F+SF S + A+S
Sbjct: 211 LPWSTKPDELRNLFNHFGI-VVSARVLSDRKGGKNRTYAFLSFLSDAERDAALS 263
>gi|189233813|ref|XP_971256.2| PREDICTED: similar to RNA-binding protein, putative [Tribolium
castaneum]
Length = 352
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 77/180 (42%), Gaps = 25/180 (13%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIEL---------------SMHSKNRNR 141
E SKT L+ +P T T E+IR+LF G V +L S ++
Sbjct: 26 EESKTNLIVNYLPQTMTQEEIRSLFSSIGEVESCKLIRDKVTGMKLPGVITSPLLTGQSL 85
Query: 142 GLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIAN 201
G FV P++A A+N L + +T+KV+YA+ + NL+++
Sbjct: 86 GYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSS---------EAIKGANLYVSG 136
Query: 202 LSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKV 261
L +DL F G ++++ ++ + S G GF+ F + AE AI G +
Sbjct: 137 LPKNMTQQDLESLFSPYG-RIITSRILCDNITGLSKGVGFIRFDQRLEAERAIQELNGTI 195
>gi|168041276|ref|XP_001773118.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675665|gb|EDQ62158.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 203
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 83/167 (49%), Gaps = 13/167 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRN-RGLAFV---TMGSPDEATA 156
+L +VP T T +++R +F +HG VL++ + + N +G FV T+ + A
Sbjct: 16 VKLFVGSVPRTITEDEVRPMFAEHGNVLEVAIIKDKRTGNQQGCCFVKYSTVEEAERAIR 75
Query: 157 ALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFI 216
AL+N ++ ++V YA +++ V+ K LF+ +L+ +A K++ E FI
Sbjct: 76 ALHNQKTLPGGVSPVQVRYADGERER-LGAVEHK------LFVGSLNKQASEKEIEELFI 128
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
G V I D ++S G F+ + + A+ AI+A G IM
Sbjct: 129 PYGR--VDDVYIMRDEQKQSRGCAFIKYSQRDHAQAAINALNGVHIM 173
>gi|312378306|gb|EFR24923.1| hypothetical protein AND_10202 [Anopheles darlingi]
Length = 645
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 95/199 (47%), Gaps = 21/199 (10%)
Query: 89 VNTEQREEEYSK-----TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGL 143
++ ++RE+E + T + +N T E + +FE++G++ + M ++RG
Sbjct: 175 ISRKEREKELGEKAKLFTNVYVKNFGEDLTEEALHEMFEKYGSITSHRVMMKD-GKSRGF 233
Query: 144 AFVTMGSPDEATAALNNLESYEFE-------GRTLKVNYAKIKKKNPFPPVQPKPFATF- 195
FV +PD A A+ L + E GR K N +++ K F ++ + +
Sbjct: 234 GFVAFENPDAAERAVQELNAKELSDGKVLYVGRAQKKNERQMELKRRFEQLKMERLTRYH 293
Query: 196 --NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETA 253
NL++ NL + LR+ F G + SA+V+ + RS G+GFV F + A A
Sbjct: 294 GVNLYVKNLDDTIDDERLRKEFAPYGT-ITSAKVMLDEG--RSKGFGFVCFSAPDEATKA 350
Query: 254 ISAFQGKVIMC--LVIALS 270
++ G+++ L +AL+
Sbjct: 351 VTEMNGRIVGSKPLYVALA 369
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 77/155 (49%), Gaps = 15/155 (9%)
Query: 114 HEDIR--ALFEQ---HGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNNLESYEFE 167
H DI LFE+ G VL I + R+ G A+V P +A AL+ + +
Sbjct: 19 HADITEATLFEKFSSAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALDTMNFDTIK 78
Query: 168 GRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEV 227
GR +++ +++ ++P + N+FI NL + K + + F + G +++S +V
Sbjct: 79 GRPIRIMWSQ---RDP----SLRKSGVGNVFIKNLDKKIDNKAMYDTFSAFG-NILSCKV 130
Query: 228 IFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
D +S GYGFV F++++ A T+I G ++
Sbjct: 131 A-QDEKGQSKGYGFVHFETEESANTSIEKVNGMLL 164
Score = 38.5 bits (88), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPD 152
+R Y L +N+ T E +R F +GT+ ++ M + R++G FV +PD
Sbjct: 287 ERLTRYHGVNLYVKNLDDTIDDERLRKEFAPYGTITSAKV-MLDEGRSKGFGFVCFSAPD 345
Query: 153 EATAALNNLESYEFEGRTLKVNYAKIKKK 181
EAT A+ + + L V A+ K++
Sbjct: 346 EATKAVTEMNGRIVGSKPLYVALAQRKEE 374
>gi|148235423|ref|NP_001081035.1| ELAV-like protein 2 [Xenopus laevis]
gi|288561905|sp|Q91903.2|ELAV2_XENLA RecName: Full=ELAV-like protein 2; AltName: Full=Elav like-1;
Short=Xel-1; AltName: Full=Protein ElrB; AltName:
Full=p45
gi|608539|gb|AAA96943.1| ribonucleoprotein [Xenopus laevis]
Length = 389
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 77/171 (45%), Gaps = 12/171 (7%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH--SKNRNRGLAFVTMG 149
E E SKT L+ +P T E++++LF G + +L ++ ++ G FV
Sbjct: 57 ESNNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYI 116
Query: 150 SPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAK 209
P +A A+N L + +T+KV+YA+ + NL+++ L K
Sbjct: 117 DPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQK 167
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
+L + F G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 168 ELEQLFSQYG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 217
>gi|255556766|ref|XP_002519416.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223541279|gb|EEF42830.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 632
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 78/168 (46%), Gaps = 11/168 (6%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T L +N+ T E ++ F + G ++ + ++ +RG FV +PD+A A+
Sbjct: 192 TNLYVKNLDPGITEELLQEKFSEFGKIVSVAIARDECGSSRGFGFVNFENPDDARWAMER 251
Query: 161 LESYEFEGRTLKVNYAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDL 211
+ E + L V A+ + + F + + F N+++ N+ + ++L
Sbjct: 252 MNGTELGSKVLYVGRAQKRAEREQILRRQFEEKRKEQITKFKGSNVYVKNIDDDVTDEEL 311
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
RE F G +++ + D+ RS G+GFV F S + A A++ F G
Sbjct: 312 REHFSQCG--TITSAKLMKDDKGRSKGFGFVCFSSSEEASKAVNTFHG 357
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 92 EQREEEYSK---TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTM 148
E+R+E+ +K + + +N+ T E++R F Q GT+ +L K R++G FV
Sbjct: 283 EKRKEQITKFKGSNVYVKNIDDDVTDEELREHFSQCGTITSAKLMKDDKGRSKGFGFVCF 342
Query: 149 GSPDEATAALNNLESYEFEGRTLKVNYAKIKKK 181
S +EA+ A+N Y F + L V A+ K++
Sbjct: 343 SSSEEASKAVNTFHGYMFHRKPLYVAIAQRKEE 375
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 11/128 (8%)
Query: 136 SKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF 195
S R+ +V SP++A A+ G+ ++V ++ ++P +
Sbjct: 49 STGRSLCYGYVNFISPEDAIRAIETKNHTPLNGKLMRVMWSH---RDP----DARRNGIG 101
Query: 196 NLFIANLSFEARAKDLREFFISEGWDVVSAEV-IFHDNPRRSAGYGFVSFKSKKVAETAI 254
N+++ NLS L+E F E V+S +V F D +S G+GFV F+S+ A +AI
Sbjct: 102 NVYVKNLSESIDNVGLQELF-GEFGTVLSCKVATFEDG--KSKGHGFVQFESEDSANSAI 158
Query: 255 SAFQGKVI 262
G ++
Sbjct: 159 EKLNGSIV 166
>gi|324501709|gb|ADY40758.1| Polyadenylate-binding protein 1 [Ascaris suum]
Length = 595
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 80/173 (46%), Gaps = 13/173 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N E ++ LF + G ++ +S+ + G FV +PD+A A+ +
Sbjct: 197 TNVFVKNFADILDKEKLQQLFAKFGKIVSCAVSVDGDGKPNGFGFVAFENPDDAEKAVKD 256
Query: 161 LESYEFEGRTLKVNYAKIKKKNPF-----------PPVQPKPFATFNLFIANLSFEARAK 209
++ Y G K+ ++ +KK + K + NL++ NL
Sbjct: 257 MQDYHLPGSDRKLYVSRFQKKCERLAELDRKYQLEKNERAKRYEGANLYLKNLDDAIDDD 316
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
LR F E +V+SA+V+ D+ RS G+GFV F A A++A +GK++
Sbjct: 317 MLRRSF-GEYGNVISAKVMRSDDG-RSKGFGFVCFDKPDEAVKAMTAMKGKMV 367
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 71/148 (47%), Gaps = 15/148 (10%)
Query: 121 FEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179
F G VL I + + R+ G A+V P++A AL + GR +++ +++ +
Sbjct: 36 FSNIGRVLSIRVCRDALTRRSLGYAYVNFERPEDAKQALETMNFDIVHGRPIRIMWSQRR 95
Query: 180 KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
P + A N+F+ NL+ +K L F G ++VS ++ D +S GY
Sbjct: 96 ------PSTSR-VAAGNVFVKNLNGSVNSKALYNKFSVFG-NIVSCKLAV-DEQSKSKGY 146
Query: 240 GFVSFKSKKVAETAISA-----FQGKVI 262
GFV F++++ A AI F+GK I
Sbjct: 147 GFVQFETEEAARKAIDGTNGVIFEGKRI 174
>gi|452851769|ref|YP_007493453.1| putative RNA-binding protein rbpE [Desulfovibrio piezophilus]
gi|451895423|emb|CCH48302.1| putative RNA-binding protein rbpE [Desulfovibrio piezophilus]
Length = 87
Score = 63.2 bits (152), Expect = 1e-07, Method: Composition-based stats.
Identities = 33/78 (42%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIEL-SMHSKNRNRGLAFVTMGSPDEATAALNNLESYE 165
N+PW+ST ED+RA FE +G V ++L + R RG FV M A A+ NL+ +
Sbjct: 9 NLPWSSTEEDVRATFEAYGEVYSVKLINDRETGRPRGFGFVEM-EDQGALEAIENLDGKD 67
Query: 166 FEGRTLKVNYAKIKKKNP 183
F GR LKVN A+ + + P
Sbjct: 68 FGGRNLKVNEARPRPERP 85
>gi|427786805|gb|JAA58854.1| Putative rna-binding protein elav/hu rrm superfamily [Rhipicephalus
pulchellus]
Length = 402
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 80/168 (47%), Gaps = 19/168 (11%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEA 154
++ SKT L + + T+T +D+ L +G ++ + + N+ +G FV SP A
Sbjct: 65 DQLSKTNLYIKGLTHTTTDKDLLNLCAPYGNIISTKAILDKDTNKCKGYGFVDFESPLAA 124
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
A+ L++ + ++ AK ++++P NL++ANL +DL +
Sbjct: 125 EKAVKALQA-----QGVQAQMAKQQEQDPT-----------NLYMANLPLYMAEQDLEQL 168
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
+ G V + I DN +S G GF +SK+ E I+ F GKV+
Sbjct: 169 LQAHG--AVISTRILRDNSAQSRGVGFARMESKEKCEQIIATFNGKVL 214
>gi|328782034|ref|XP_396057.4| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Apis
mellifera]
Length = 601
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 85/170 (50%), Gaps = 15/170 (8%)
Query: 113 THEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEF-EGRTL 171
T + ++ +FE++GT+ ++ + ++RG FV PD A A+ L E EG+ +
Sbjct: 175 TDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCM 234
Query: 172 KVNYAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDV 222
V A+ K K F ++ + + NL++ NL + LR+ F G +
Sbjct: 235 YVGRAQKKAERQQELKRKFEQLKLERLNRYQGVNLYVKNLDDSIDDERLRKEFAPFGT-I 293
Query: 223 VSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIALS 270
SA+V+ + RS G+GFV F + + A A++ G++I+ L +AL+
Sbjct: 294 TSAKVMMEEG--RSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALA 341
Score = 43.9 bits (102), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 74/155 (47%), Gaps = 15/155 (9%)
Query: 114 HEDIR--ALFEQ---HGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFE 167
H DI LFE+ G VL I + R+ G A+V P +A AL+ + +
Sbjct: 19 HSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDMIK 78
Query: 168 GRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEV 227
GR +++ +++ ++P + N+FI NL K + + F + G +++S +V
Sbjct: 79 GRPIRIMWSQ---RDP----SLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFG-NILSCKV 130
Query: 228 IFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
D S GYGFV F++++ A +I G ++
Sbjct: 131 A-QDESGVSKGYGFVHFETEEAANKSIDRVNGMLL 164
>gi|324511850|gb|ADY44928.1| Polyadenylate-binding protein 1, partial [Ascaris suum]
Length = 544
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 81/173 (46%), Gaps = 13/173 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N E ++ LF + G ++ +S+ + G FV +PD+A A+ +
Sbjct: 197 TNVFVKNFADILDKEKLQQLFAKFGKIVSCAVSVDGDGKPNGFGFVAFENPDDAEKAVKD 256
Query: 161 LESYEFEGRTLKVNYAKIKKKNPF-----------PPVQPKPFATFNLFIANLSFEARAK 209
++ Y G K+ ++ +KK + K + NL++ NL +A
Sbjct: 257 MQDYHLPGSDRKLYVSRFQKKCERLAELDRKYQLEKNERAKRYEGANLYLKNLD-DAIDD 315
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
D+ E +V+SA+V+ D+ RS G+GFV F A A++A +GK++
Sbjct: 316 DMLRRSFGEYGNVISAKVMRSDDG-RSKGFGFVCFDKPDEAVKAMTAMKGKMV 367
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 71/148 (47%), Gaps = 15/148 (10%)
Query: 121 FEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179
F G VL I + + R+ G A+V P++A AL + GR +++ +++ +
Sbjct: 36 FSNIGRVLSIRVCRDALTRRSLGYAYVNFERPEDAKQALETMNFDIVHGRPIRIMWSQRR 95
Query: 180 KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
P + A N+F+ NL+ +K L F G ++VS ++ D +S GY
Sbjct: 96 ------PSTSR-VAAGNVFVKNLNGSVNSKALYNKFSVFG-NIVSCKLAV-DEQSKSKGY 146
Query: 240 GFVSFKSKKVAETAISA-----FQGKVI 262
GFV F++++ A AI F+GK I
Sbjct: 147 GFVQFETEEAARKAIDGTNGVIFEGKRI 174
>gi|17531965|ref|NP_495121.1| Protein TIAR-1, isoform a [Caenorhabditis elegans]
gi|373219010|emb|CCD65015.1| Protein TIAR-1, isoform a [Caenorhabditis elegans]
Length = 408
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 78/172 (45%), Gaps = 12/172 (6%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLE 162
L N+ T T + I LF Q G+V ++ N AFV +A+ AL +
Sbjct: 48 LYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDGSNDP--YAFVEFSDHGQASQALQTMN 105
Query: 163 SYEFEGRTLKVNYAKIKKKNPFPPVQPKPFAT---FNLFIANLSFEARAKDLREFFISEG 219
R +KVN+A P Q T F++F+ +LS E + LRE F G
Sbjct: 106 KRLLLDREMKVNWA------VEPGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFG 159
Query: 220 WDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271
DV A+VI N +S GYGFVS+ ++ AE AI G+ + I ++
Sbjct: 160 -DVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNW 210
>gi|395819370|ref|XP_003783066.1| PREDICTED: ELAV-like protein 2 [Otolemur garnettii]
Length = 388
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 84/181 (46%), Gaps = 13/181 (7%)
Query: 81 VDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNR 139
++++ ++ V++ E+ SKT L+ +P T E++++LF G + +L +
Sbjct: 50 INNNCSSPVDSGNTED--SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQ 107
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI 199
+ G FV P +A A+N L + +T+KV+YA+ + NL++
Sbjct: 108 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYV 158
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ L K+L + F G ++++ ++ S G GF+ F + AE AI G
Sbjct: 159 SGLPKTMTQKELEQLFSQYG-RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 217
Query: 260 K 260
+
Sbjct: 218 Q 218
>gi|443919574|gb|ELU39701.1| RNA recognition motif domain-containing protein [Rhizoctonia solani
AG-1 IA]
Length = 716
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 91/202 (45%), Gaps = 14/202 (6%)
Query: 77 QDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-H 135
++P + A +TE E S T V + + W ++ + F+ GTV+ + M
Sbjct: 90 EEPAQTPAKKAKTDTEAGE---SNTVFVGR-LSWNVDNDWLAQEFQGCGTVVAARVQMDR 145
Query: 136 SKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNP------FPPVQP 189
+ ++RG A+V SP EA A+ + + +GR + V+ ++ ++ NP F +
Sbjct: 146 NSGKSRGFAYVEFSSPAEAQKAVEEMNGKQIDGREVNVDISQPRQPNPEKRAQVFGDSES 205
Query: 190 KPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKV 249
+P T LF+ NLS+ L F G DV + + G+G+V F ++
Sbjct: 206 QPSTT--LFVGNLSWNTTEDGLWTAFGEFG-DVTHVRLPTDQESGKPKGFGYVEFGDQEG 262
Query: 250 AETAISAFQGKVIMCLVIALSY 271
A A A +GK + + L Y
Sbjct: 263 ATKAYEAMKGKDLDGRTLRLDY 284
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 7/104 (6%)
Query: 81 VDSSSAAAVNTEQR------EEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIEL-S 133
VD S N E+R E T L N+ W +T + + F + G V + L +
Sbjct: 183 VDISQPRQPNPEKRAQVFGDSESQPSTTLFVGNLSWNTTEDGLWTAFGEFGDVTHVRLPT 242
Query: 134 MHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177
+ +G +V G + AT A ++ + +GRTL+++Y++
Sbjct: 243 DQESGKPKGFGYVEFGDQEGATKAYEAMKGKDLDGRTLRLDYSQ 286
>gi|403213707|emb|CCK68209.1| hypothetical protein KNAG_0A05440 [Kazachstania naganishii CBS
8797]
Length = 442
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 83/175 (47%), Gaps = 7/175 (4%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATA 156
E S L N+ + T + ++ F+ G ++D+++ + K+ AFV +A+
Sbjct: 75 ETSDRVLYVGNLDKSITEDILKQYFQVAGQIVDVKVMIDKKSNYVNYAFVEYAKAHDASV 134
Query: 157 ALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFI 216
AL L + E +K+N A +++ +TFNLF+ +L+ + L F
Sbjct: 135 ALQTLNGIQIENNKVKINRAFQSQQS------TTDDSTFNLFVGDLNIDIDDDTLSRSF- 187
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271
+ + A V++ RS GYGFVSF ++ A+ A+ QGK + I +++
Sbjct: 188 KDFPSYIQAHVMWDMQTGRSRGYGFVSFADQEQAQKAMEEMQGKELNGRPIRINW 242
>gi|171693953|ref|XP_001911901.1| hypothetical protein [Podospora anserina S mat+]
gi|170946925|emb|CAP73729.1| unnamed protein product [Podospora anserina S mat+]
Length = 403
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 79/181 (43%), Gaps = 10/181 (5%)
Query: 94 REEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRN-RGLAFVTMGSPD 152
RE+ T V N+ T E + L Q G V + + + RN +G F+ +P+
Sbjct: 16 REQNKDATVYVG-NIDERFTQELLTELMTQVGPVRQVHMPLDRVTRNHQGYGFIEFDTPE 74
Query: 153 EATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLR 212
A A L G+ L+VN A K+ LFI NL + K L
Sbjct: 75 SAEYAAKCLNGIRVHGKPLRVNKASADKQKTV-------DIGAELFINNLDPQVDEKILY 127
Query: 213 EFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSYL 272
+ F + G + ++ DN S GYGFVSF S + ++ A++ G+ ++ I++ Y
Sbjct: 128 DTFSTFGQILRQPNIVRDDN-NISKGYGFVSFDSFEASDAALANMNGQYLLSKAISVDYA 186
Query: 273 Y 273
Y
Sbjct: 187 Y 187
>gi|68478681|ref|XP_716609.1| hypothetical protein CaO19.7368 [Candida albicans SC5314]
gi|46438281|gb|EAK97614.1| hypothetical protein CaO19.7368 [Candida albicans SC5314]
gi|238880985|gb|EEQ44623.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 510
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 88/194 (45%), Gaps = 9/194 (4%)
Query: 82 DSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNR 141
D A + ++ E S L N+P +++ E I+ LF G + ++ KN+
Sbjct: 60 DEKQVNAASAKEGGREVSNKILYVGNLPKSASEETIQELFSVGGNPVKTIKILNDKNKAG 119
Query: 142 -GLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA---KIKKKNPFPPVQPKPFATFNL 197
AF+ + + A ALN L + +KVN+A NP +P FN+
Sbjct: 120 FNYAFIEYDTNEVADMALNTLNGRLVDDVEIKVNWAFQSAAIAGNPNNTEEP----LFNI 175
Query: 198 FIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAF 257
F+ +LS E + LR F S+ + A V++ RS GYGFV+F ++ AE A+
Sbjct: 176 FVGDLSPEVNDEGLRNAF-SKFESLKQAHVMWDMQTSRSRGYGFVTFGNQSDAELALQTM 234
Query: 258 QGKVIMCLVIALSY 271
G+ + I ++
Sbjct: 235 NGEWLCGRAIRCNW 248
>gi|224112006|ref|XP_002316051.1| predicted protein [Populus trichocarpa]
gi|222865091|gb|EEF02222.1| predicted protein [Populus trichocarpa]
Length = 343
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 77/164 (46%), Gaps = 7/164 (4%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALN 159
+L +VP T+T DIR LFE+HG V+++ L + + +G F+ + +EA A+
Sbjct: 88 AKLFVGSVPRTATEMDIRPLFEEHGNVIEVALIKDKRTGQQQGCCFIKYATSEEADRAIR 147
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEG 219
L + RTL I+ + + + LF+ +L+ +A K++ E F G
Sbjct: 148 ALHNQ----RTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFTPYG 203
Query: 220 WDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
V + D ++S G GFV + + +A AI+ G M
Sbjct: 204 R--VEDVYLMRDEMKQSRGCGFVKYSHRDMALAAINGLNGIYTM 245
>gi|224059164|ref|XP_002299747.1| predicted protein [Populus trichocarpa]
gi|222847005|gb|EEE84552.1| predicted protein [Populus trichocarpa]
Length = 367
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 78/168 (46%), Gaps = 11/168 (6%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T L +N+ T T + ++ +F G V + + M + +++ FV SPD+A A++
Sbjct: 195 TNLYVKNLDETITEDGLKDMFSVVGDVSSVAIMMDHEGKSKHFGFVNFKSPDDAKKAVDV 254
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPVQ---------PKPFATFNLFIANLSFEARAKDL 211
+ +TL V A+ K + Q + NL++ NL+ + K L
Sbjct: 255 MNGSVIGSKTLFVGKAQRKSERTMILKQEYKDLHNRSTEKLRASNLYVKNLNVDIDDKKL 314
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+E F + G ++S +VI H N S +GFV F S + A A+ A G
Sbjct: 315 KEVFSAYG-KILSVKVICH-NDGTSKQFGFVCFASPEEANKALVALNG 360
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 75/160 (46%), Gaps = 6/160 (3%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLE 162
L +N+ ++ + + ++F ++GT+L +++ + R++G FV S D A A L
Sbjct: 107 LFVKNLDFSISSSCLESIFSKYGTILSCKVAGEN-GRSKGFGFVQFESQDSALVAQTALH 165
Query: 163 SYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDV 222
G+ L V K KK P T NL++ NL L++ F G
Sbjct: 166 DTMLGGKKLHV--CKFVKKTERTAAAPCEVFT-NLYVKNLDETITEDGLKDMFSVVG--D 220
Query: 223 VSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
VS+ I D+ +S +GFV+FKS A+ A+ G VI
Sbjct: 221 VSSVAIMMDHEGKSKHFGFVNFKSPDDAKKAVDVMNGSVI 260
>gi|350408508|ref|XP_003488428.1| PREDICTED: polyadenylate-binding protein 1-like isoform 3 [Bombus
impatiens]
Length = 601
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 85/170 (50%), Gaps = 15/170 (8%)
Query: 113 THEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEF-EGRTL 171
T + ++ +FE++GT+ ++ + ++RG FV PD A A+ L E EG+ +
Sbjct: 175 TDDKLKDMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCM 234
Query: 172 KVNYAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDV 222
V A+ K K F ++ + + NL++ NL + LR+ F G +
Sbjct: 235 YVGRAQKKAERQQELKRKFEQLKLERLNRYQGVNLYVKNLDDSIDDERLRKEFAPFGT-I 293
Query: 223 VSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIALS 270
SA+V+ + RS G+GFV F + + A A++ G++I+ L +AL+
Sbjct: 294 TSAKVMMEEG--RSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALA 341
Score = 43.9 bits (102), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 74/155 (47%), Gaps = 15/155 (9%)
Query: 114 HEDIR--ALFEQ---HGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFE 167
H DI LFE+ G VL I + R+ G A+V P +A AL+ + +
Sbjct: 19 HSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDMIK 78
Query: 168 GRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEV 227
GR +++ +++ ++P + N+FI NL K + + F + G +++S +V
Sbjct: 79 GRPIRIMWSQ---RDP----SLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFG-NILSCKV 130
Query: 228 IFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
D S GYGFV F++++ A +I G ++
Sbjct: 131 A-QDESGVSKGYGFVHFETEEAANKSIDRVNGMLL 164
>gi|225442420|ref|XP_002277538.1| PREDICTED: polyadenylate-binding protein, cytoplasmic and
nuclear-like [Vitis vinifera]
Length = 630
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 12/181 (6%)
Query: 92 EQRE--EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMG 149
E++E EE T + +N+ T + IR F + G V + + ++RG FV
Sbjct: 196 ERKEASEETKFTNVYVKNLGEDLTEDIIRDKFSEFGKVGTVVIMKDGNGKSRGFGFVNFE 255
Query: 150 SPDEATAALNNLESYEFEGRTLKVNYAK--------IKKKNPFPPVQPKPFATFNLFIAN 201
SPDEA A+ L + L V A+ +K + NL++ N
Sbjct: 256 SPDEAKKAVEALNGAMLGSKKLFVGRAQKKAERQELLKHEKEMVNCNIGKEKASNLYVKN 315
Query: 202 LSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKV 261
L L+E F S G + SA+V+ HD+ S G+GFV F + + A+ A++ G +
Sbjct: 316 LDASVDDDKLQEHFSSCG-QITSAKVMRHDSG-LSKGFGFVCFSTSEEAQKALTTLNGTL 373
Query: 262 I 262
+
Sbjct: 374 L 374
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 76/160 (47%), Gaps = 6/160 (3%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLE 162
L +N+ + ++ +F + G +L +++ +++ FV S D ATAALN L
Sbjct: 119 LFVKNLDPSINSASLQDIFCKFGNILSCKVA-EENGKSKCFGFVQFDSDDSATAALNALN 177
Query: 163 SYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDV 222
+G+ L V+ +KK + F N+++ NL + +R+ F G
Sbjct: 178 DTMLDGKKLFVSKF-VKKCERKEASEETKFT--NVYVKNLGEDLTEDIIRDKFSEFG--K 232
Query: 223 VSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
V VI D +S G+GFV+F+S A+ A+ A G ++
Sbjct: 233 VGTVVIMKDGNGKSRGFGFVNFESPDEAKKAVEALNGAML 272
>gi|218885158|ref|YP_002434479.1| RNP-1 like RNA-binding protein [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218756112|gb|ACL07011.1| RNP-1 like RNA-binding protein [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 88
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 50/85 (58%), Gaps = 4/85 (4%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIEL-SMHSKNRNRGLAFVTMGSPDEATAALNNL 161
L N+P++++ ++IR LF QHG VL ++L S R RG FV M + D A +A+ L
Sbjct: 5 LYVGNLPFSASEDEIRDLFSQHGQVLSVKLISDRETGRPRGFGFVEMEAAD-ANSAVEAL 63
Query: 162 ESYEFEGRTLKVNYAKIKKKNPFPP 186
Y F GR LKVN A + + P PP
Sbjct: 64 NGYSFGGRALKVNEA--QPRAPRPP 86
>gi|18858615|ref|NP_571524.1| ELAV-like protein 3 [Danio rerio]
gi|1683635|gb|AAB36515.1| zHuC [Danio rerio]
Length = 345
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 76/163 (46%), Gaps = 11/163 (6%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T E+ ++LF G + +L ++ G FV P++A A
Sbjct: 36 SKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKA 95
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + + +T+KV+YA+ + NL+++ L KD+ + F S
Sbjct: 96 INTLNGLKLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMSQKDMEQLF-S 145
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
+ ++++ ++ + S G GF+ F + AE AI G+
Sbjct: 146 QYGRIITSRILVNQVTGISRGVGFIRFDKRNEAEEAIKGLNGQ 188
>gi|148224170|ref|NP_001084080.1| ELAV-like protein 3 [Xenopus laevis]
gi|82245647|sp|Q91584.1|ELAV3_XENLA RecName: Full=ELAV-like protein 3; AltName: Full=Protein ElrC
gi|608541|gb|AAA96944.1| ribonucleoprotein [Xenopus laevis]
Length = 348
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 80/175 (45%), Gaps = 11/175 (6%)
Query: 87 AAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAF 145
+N E + SKT L+ +P T E+ ++LF G + +L ++ G F
Sbjct: 20 GILNGTNGEADDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGF 79
Query: 146 VTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFE 205
V P++A A+N L + + +T+KV+YA+ + NL++++L
Sbjct: 80 VNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSSAS---------IRDANLYVSSLPKT 130
Query: 206 ARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
K++ + F S+ ++++ ++ S G GF+ F + AE AI G+
Sbjct: 131 MNQKEMEQLF-SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 184
>gi|307206990|gb|EFN84815.1| RNA-binding motif, single-stranded-interacting protein 1
[Harpegnathos saltator]
Length = 382
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 8/171 (4%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSP 151
Q+ E+ SKT L + + +T +D+ + Q+GT+ + + + N+ +G FV SP
Sbjct: 42 QQAEQLSKTNLYIRGLNQNTTDKDLVNMCSQYGTITSTKAILDKNTNKCKGYGFVDFESP 101
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDL 211
A A+ L + + + KV +++ + P NL+IANL + D+
Sbjct: 102 LAAEGAVKALVAKGIQAQMAKVGIWLLRRLDSQQEQDPT-----NLYIANLPLNFKENDV 156
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
E +++ V+S I D +S G GF +SK+ E I F GK +
Sbjct: 157 -ETLLAQYGQVISTR-ILRDTSGQSKGVGFARMESKEKCEQIIQMFNGKAL 205
>gi|397521309|ref|XP_003830739.1| PREDICTED: ELAV-like protein 2 isoform 2 [Pan paniscus]
gi|397521311|ref|XP_003830740.1| PREDICTED: ELAV-like protein 2 isoform 3 [Pan paniscus]
gi|397521313|ref|XP_003830741.1| PREDICTED: ELAV-like protein 2 isoform 4 [Pan paniscus]
Length = 346
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 84/181 (46%), Gaps = 13/181 (7%)
Query: 81 VDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNR 139
+++S ++ V++ E+ SKT L+ +P T E++++LF G + +L +
Sbjct: 21 INNSCSSPVDSGNTED--SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQ 78
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI 199
+ G FV P +A A+N L + +T+KV+YA+ + NL++
Sbjct: 79 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYV 129
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ L K+L + F G ++++ ++ S G GF+ F + AE AI G
Sbjct: 130 SGLPKTMTQKELEQLFSQYG-RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Query: 260 K 260
+
Sbjct: 189 Q 189
>gi|397521307|ref|XP_003830738.1| PREDICTED: ELAV-like protein 2 isoform 1 [Pan paniscus]
Length = 359
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 84/181 (46%), Gaps = 13/181 (7%)
Query: 81 VDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNR 139
+++S ++ V++ E+ SKT L+ +P T E++++LF G + +L +
Sbjct: 21 INNSCSSPVDSGNTED--SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQ 78
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI 199
+ G FV P +A A+N L + +T+KV+YA+ + NL++
Sbjct: 79 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYV 129
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ L K+L + F G ++++ ++ S G GF+ F + AE AI G
Sbjct: 130 SGLPKTMTQKELEQLFSQYGR-IITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Query: 260 K 260
+
Sbjct: 189 Q 189
>gi|254572962|ref|XP_002493590.1| Nucleolar protein that binds nuclear localization sequences
[Komagataella pastoris GS115]
gi|238033389|emb|CAY71411.1| Nucleolar protein that binds nuclear localization sequences
[Komagataella pastoris GS115]
gi|328354581|emb|CCA40978.1| Nuclear localization sequence-binding protein [Komagataella
pastoris CBS 7435]
Length = 362
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 78/182 (42%), Gaps = 14/182 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAALN 159
T L + W+ E ++ FE G V+ + M + R+RG +V + A AL
Sbjct: 126 TTLFVGRLSWSIDDEWLKKEFEHIGGVVGARVMMERATGRSRGYGYVDFDNKASAEKALE 185
Query: 160 NLESYEFEGRTLKVNYAKIKKKNP----------FPPVQPKPFATFNLFIANLSFEARAK 209
++ E +GR + V+ + K P + + P T LF+ NLSF+A
Sbjct: 186 EMQGKEIDGRPINVDMSNSKPAAPAARNNDRASQYGDKRSPPSDT--LFLGNLSFQADRD 243
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIAL 269
L E F G +V S + H + G+G+V F S A A+ A G+ + I L
Sbjct: 244 TLFELFSKHG-NVTSVRIPTHPETEQPKGFGYVQFSSVDEATGALEALNGEYVDNRPIRL 302
Query: 270 SY 271
Y
Sbjct: 303 DY 304
>gi|147769692|emb|CAN65531.1| hypothetical protein VITISV_039630 [Vitis vinifera]
Length = 555
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 12/181 (6%)
Query: 92 EQRE--EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMG 149
E++E EE T + +N+ T + IR F + G V + + ++RG FV
Sbjct: 196 ERKEASEETKFTNVYVKNLGEDLTEDIIRDKFSEFGKVGTVVIMKDGNGKSRGFGFVNFE 255
Query: 150 SPDEATAALNNLESYEFEGRTLKVNYAK--------IKKKNPFPPVQPKPFATFNLFIAN 201
SPDEA A+ L + L V A+ +K + NL++ N
Sbjct: 256 SPDEAKKAVEALNGAMLGSKKLFVGRAQKKAERQELLKHEKEMVNCNIGKEKASNLYVKN 315
Query: 202 LSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKV 261
L L+E F S G + SA+V+ HD+ S G+GFV F + + A+ A++ G +
Sbjct: 316 LDASVDDDKLQEHFSSCG-QITSAKVMRHDSG-LSKGFGFVCFSTSEEAQKALTTLNGTL 373
Query: 262 I 262
+
Sbjct: 374 L 374
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 76/160 (47%), Gaps = 6/160 (3%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLE 162
L +N+ + ++ +F + G +L +++ +++ FV S D ATAALN L
Sbjct: 119 LFVKNLDPSINSASLQDIFCKFGNILSCKVA-EENGKSKCFGFVQFDSDDSATAALNALN 177
Query: 163 SYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDV 222
+G+ L V+ +KK + F N+++ NL + +R+ F G
Sbjct: 178 DTMLDGKKLFVSKF-VKKCERKEASEETKFT--NVYVKNLGEDLTEDIIRDKFSEFG--K 232
Query: 223 VSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
V VI D +S G+GFV+F+S A+ A+ A G ++
Sbjct: 233 VGTVVIMKDGNGKSRGFGFVNFESPDEAKKAVEALNGAML 272
>gi|393217699|gb|EJD03188.1| RNA-binding domain-containing protein [Fomitiporia mediterranea
MF3/22]
Length = 142
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYE 165
N+ W +T + +R F +G V+D I + R+RG FVT S EAT A++ L E
Sbjct: 9 NLSWNTTDDTLRKAFSDYGQVVDSIVMRDRDTGRSRGFGFVTFSSETEATGAISALNEQE 68
Query: 166 FEGRTLKVNYAKIK 179
FEGR +KVN+A +
Sbjct: 69 FEGRRIKVNFANAR 82
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETA 253
T +++ NLS+ LR+ F G VV + V+ + RS G+GFV+F S+ A A
Sbjct: 2 TAKVYVGNLSWNTTDDTLRKAFSDYG-QVVDSIVMRDRDTGRSRGFGFVTFSSETEATGA 60
Query: 254 ISA-----FQGKVI 262
ISA F+G+ I
Sbjct: 61 ISALNEQEFEGRRI 74
>gi|328713207|ref|XP_001947071.2| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 630
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 94/199 (47%), Gaps = 20/199 (10%)
Query: 89 VNTEQREEEYSK-----TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGL 143
V + RE+E + T + +N+ +++ +FE++G++ ++ +RG
Sbjct: 166 VGRKDREKELGQKAKLYTNVYIKNIDENVNDKELFEMFEKYGSITSFKVMFRDDGSSRGF 225
Query: 144 AFVTMGSPDEATAALNNLESYEF-EGRTLKVNYAK--------IKKK-NPFPPVQPKPFA 193
FV P+EA A+ L E EG+T V A+ +K+K + + +
Sbjct: 226 GFVAFEDPEEAEKAVTELHGKESPEGKTYYVGRAQKKAERQQELKRKFEQYKIERMNRYQ 285
Query: 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETA 253
NL++ NL + LR+ F G + SA+V+ D RS G+GFV F S + A A
Sbjct: 286 GVNLYVKNLDDTIDDERLRKEFSVFGT-ITSAKVMMDDG--RSKGFGFVCFSSPEEATKA 342
Query: 254 ISAFQGKVIMC--LVIALS 270
++ G+++ L +AL+
Sbjct: 343 VTDMNGRIVGTKPLYVALA 361
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 74/155 (47%), Gaps = 15/155 (9%)
Query: 114 HEDIR--ALFEQH---GTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFE 167
H D+ LFE+ G VL I + R+ G A+V + +A AL+ + +
Sbjct: 10 HSDVTEAMLFEKFSTVGAVLSIRVCRDMITRRSLGYAYVNFQNMADAERALDTMNFDILK 69
Query: 168 GRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEV 227
GR +++ +++ ++P + N+FI NL K + + F + G +++S +V
Sbjct: 70 GRPMRIMWSQ---RDP----SLRKSGVGNVFIKNLDRSIDNKAMYDTFSAFG-NILSCKV 121
Query: 228 IFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
D +S GYGFV F+ ++ A +I G ++
Sbjct: 122 A-QDETGQSKGYGFVHFEMEQSATQSIEKVNGMLL 155
Score = 38.1 bits (87), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPD 152
+R Y L +N+ T E +R F GT+ ++ M R++G FV SP+
Sbjct: 279 ERMNRYQGVNLYVKNLDDTIDDERLRKEFSVFGTITSAKV-MMDDGRSKGFGFVCFSSPE 337
Query: 153 EATAALNNLESYEFEGRTLKVNYAKIKK 180
EAT A+ ++ + L V A+ K+
Sbjct: 338 EATKAVTDMNGRIVGTKPLYVALAQRKE 365
>gi|189241702|ref|XP_966757.2| PREDICTED: similar to hrp48.1 [Tribolium castaneum]
Length = 400
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 76/159 (47%), Gaps = 9/159 (5%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSPDEATAA 157
++T+L + W +T ++++ F ++G V+D + + R+RG FVT P
Sbjct: 13 NETKLFVGGLSWETTQDNLQRFFSRYGEVIDCVVMKNAESGRSRGFGFVTFSDPANVNTV 72
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF-NLFIANLSFEARAKDLREFFI 216
L N + +GRT+ K NP +PK + +F+ L DLR FF
Sbjct: 73 LQN-GPHTLDGRTIDP-----KPCNPRTLQKPKKGGGYPKVFLGGLPSNVTETDLRTFFT 126
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
G V+ +++ ++S G+GF+SF+ ++ + +S
Sbjct: 127 RFG-KVMEVVIMYDQEKKKSRGFGFLSFEDEESVDRCVS 164
>gi|317143798|ref|XP_003189536.1| pre-RNA splicing factor Srp2 [Aspergillus oryzae RIB40]
Length = 299
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 81/182 (44%), Gaps = 24/182 (13%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATA 156
E S TRL N+P T +DI F HG+ E+ + + G F+ +A
Sbjct: 3 EVSSTRLYLGNLPRNVTKQDIEEHFSTHGSGKITEIKLMN-----GFGFIEYEDAMDARD 57
Query: 157 ALNNLESYEFEGRTLKVNYAK-IKKKNPFP-----PVQPKPFAT-FNLFIANLSFEARAK 209
+ +F+G L V +A+ ++K FP P P+P T + + ++ L E +
Sbjct: 58 VVPAFHGSDFKGERLTVQFARGPRRKENFPGPMDRPNMPRPRRTVYRMMVSGLP-ETSWQ 116
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA-----FQGKVIMC 264
DL++F G DVV +E R G GFV F++ +TAI F+G + C
Sbjct: 117 DLKDFARGAGLDVVYSETG------REPGRGFVEFETANDLKTAIEKLDGRDFKGSRVSC 170
Query: 265 LV 266
+
Sbjct: 171 VA 172
>gi|389610655|dbj|BAM18939.1| polyA-binding protein [Papilio polytes]
Length = 611
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 91/196 (46%), Gaps = 20/196 (10%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHED-----IRALFEQHGTVLDIELSMHSKNRNRGLAFV 146
++RE+E + + NV + ED +R +FE++G + ++ +RG FV
Sbjct: 178 KEREKELGEKAKLFTNVYVKNFGEDFSDEMLREMFEKYGRITSHKVMYKEDGSSRGFGFV 237
Query: 147 TMGSPDEATAALNNLESYEF-EGRTLKVNYAKIKK------KNPFPPVQPKPFATF---N 196
PD A A L E EG+ L V A+ K K F ++ + + N
Sbjct: 238 AFEDPDAAERACMELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVN 297
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
L++ NL + LR+ F G + SA+V+ D RS G+GFV F S + A A++
Sbjct: 298 LYVKNLDDTIDDERLRKEFAPFGT-ITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTE 354
Query: 257 FQGKVIMC--LVIALS 270
G+++ L +AL+
Sbjct: 355 MNGRIVGTKPLYVALA 370
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 73/155 (47%), Gaps = 15/155 (9%)
Query: 114 HEDIR--ALFEQ---HGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFE 167
H DI LFE+ G VL I + R+ G A+V P +A AL + +
Sbjct: 19 HSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALEGMNFDIIK 78
Query: 168 GRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEV 227
GR +++ ++ +++P + N+FI NL K + + F + G +++S +V
Sbjct: 79 GRPIRIMWS---QRDP----SLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFG-NILSCKV 130
Query: 228 IFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
D S GYGFV F++++ A +I G ++
Sbjct: 131 A-QDETGASKGYGFVHFETEEAANKSIEKVNGMLL 164
Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/158 (20%), Positives = 68/158 (43%), Gaps = 3/158 (1%)
Query: 106 QNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYE 165
+N+ T ++ + F G +L +++ ++G FV + + A ++ +
Sbjct: 104 KNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVNGML 163
Query: 166 FEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSA 225
G+ + V I +K + K N+++ N + + LRE F E + +++
Sbjct: 164 LNGKKVYVGRF-IPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLREMF--EKYGRITS 220
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
+ + S G+GFV+F+ AE A GK ++
Sbjct: 221 HKVMYKEDGSSRGFGFVAFEDPDAAERACMELNGKELV 258
>gi|340712092|ref|XP_003394598.1| PREDICTED: protein alan shepard-like isoform 2 [Bombus terrestris]
Length = 549
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 81/171 (47%), Gaps = 19/171 (11%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSP 151
Q+ E+ SKT L + + +T +D+ + Q+GT+ + + + N+ +G FV SP
Sbjct: 212 QQAEQLSKTNLYIRGLNQNTTDKDLVNMCSQYGTITSTKAILDKNTNKCKGYGFVDFESP 271
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDL 211
A A+ L + + ++ AK ++++P NL+IANL + D+
Sbjct: 272 VAAEGAVKALVA-----KGIQAQMAKQQEQDPT-----------NLYIANLPLSFKENDV 315
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
E +++ V+S I D +S G GF +SK+ E I F GK +
Sbjct: 316 -EGLLAQYGQVISTR-ILRDTAGQSKGVGFARMESKEKCEQIIQMFNGKAL 364
>gi|332025572|gb|EGI65735.1| Protein alan shepard [Acromyrmex echinatior]
Length = 382
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 8/171 (4%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSP 151
Q+ E+ SKT L + + +T +D+ + Q+GT+ + + + N+ +G FV SP
Sbjct: 42 QQAEQLSKTNLYIRGLNQNTTDKDLVNMCSQYGTITSTKAILDKNTNKCKGYGFVDFESP 101
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDL 211
A A+ L + + + KV +++ + P NL+IANL + D+
Sbjct: 102 MAAEGAVKALVAKGIQAQMAKVGIWLLRRLDSQQEQDPT-----NLYIANLPLTFKENDV 156
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
E +++ V+S I D +S G GF +SK+ E I F GK +
Sbjct: 157 -EALLAQYGQVISTR-ILRDTSGQSKGVGFARMESKEKCEQIIQMFNGKAL 205
>gi|389593931|ref|XP_003722214.1| putative RNA-binding protein [Leishmania major strain Friedlin]
gi|321438712|emb|CBZ12472.1| putative RNA-binding protein [Leishmania major strain Friedlin]
Length = 639
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 82/176 (46%), Gaps = 23/176 (13%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIEL--SMHSKNRNRGLAFVTMGSPDEATA 156
S+T L + + T +D+R LFEQ+GT++ L +H+ + G AFV + DEA+A
Sbjct: 64 SQTNLFVRKLASAVTEDDMRKLFEQYGTIMSFALMRDIHT-GESLGTAFVRYSTHDEASA 122
Query: 157 ALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFI 216
A+ L+ E GR + + +A K+++ P LF+ N+ + A+ LR+ F
Sbjct: 123 AMAALDGRELYGRPISIQWA--KREHDSTPCGDARRKIRKLFVRNIPLDVTARHLRQIFS 180
Query: 217 SEGWDVVSAEVIFH------------DNPRRSA---GYGFVSFKSKKVAETAISAF 257
G + V H DN R ++ F+ F+ VAE A+ A
Sbjct: 181 KFGS---ISNVTLHSDTAPAAARDNGDNSRPASQMRNIAFILFQDDDVAEQAVGAL 233
>gi|47220048|emb|CAG12196.1| unnamed protein product [Tetraodon nigroviridis]
Length = 363
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 74/163 (45%), Gaps = 11/163 (6%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T E+ ++LF G + +L ++ G FV P++A A
Sbjct: 34 SKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKA 93
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + + +T+KV+YA+ + NL+++ L KD+ + F
Sbjct: 94 INTLNGLKLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMSQKDMEQLFSQ 144
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 145 YG-RIITSRILVDQVTGISRGVGFIRFDKRNEAEEAIKGLNGQ 186
>gi|383861182|ref|XP_003706065.1| PREDICTED: protein alan shepard-like [Megachile rotundata]
Length = 405
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 81/171 (47%), Gaps = 19/171 (11%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSP 151
Q+ E+ SKT L + + +T +D+ + Q+GT+ + + + N+ +G FV SP
Sbjct: 67 QQAEQLSKTNLYIRGLNQNTTDKDLVNMCSQYGTITSTKAILDKNTNKCKGYGFVDFESP 126
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDL 211
A A+ L + + ++ AK ++++P NL+IANL + D+
Sbjct: 127 VAAEGAVKALVA-----KGIQAQMAKQQEQDPT-----------NLYIANLPLSFKENDV 170
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
E +++ V+S I D +S G GF +SK+ E I F GK +
Sbjct: 171 -EGLLAQYGQVISTR-ILRDTAGQSKGVGFARMESKEKCEQIIQMFNGKAL 219
>gi|349732184|ref|NP_001025498.3| ELAV-like protein 2 [Xenopus (Silurana) tropicalis]
gi|288561906|sp|Q28GD4.2|ELAV2_XENTR RecName: Full=ELAV-like protein 2; AltName: Full=Protein ElrB
Length = 375
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 75/170 (44%), Gaps = 11/170 (6%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGS 150
E E SKT L+ +P T E++++LF G + +L ++ G FV
Sbjct: 58 ESSNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYID 117
Query: 151 PDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKD 210
P +A A+N L + +T+KV+YA+ + NL+++ L K+
Sbjct: 118 PKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQKE 168
Query: 211 LREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
L + F G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 169 LEQLFSQYG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 217
>gi|350633625|gb|EHA21990.1| hypothetical protein ASPNIDRAFT_56436 [Aspergillus niger ATCC 1015]
Length = 299
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 87/188 (46%), Gaps = 28/188 (14%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATA 156
E S TRL N+P T +DI F HG+ E+ + + G F+ ++A
Sbjct: 3 EVSSTRLYLGNLPRNVTKQDIEEHFSTHGSGKITEIKLMN-----GFGFIEY---EDAMD 54
Query: 157 ALNNL-ESYEFEGRTLKVNYAK-IKKKNPFP-----PVQPKPFAT-FNLFIANLSFEARA 208
A + + + +F+G L V +A+ ++K FP P P+P T F + ++ L E
Sbjct: 55 ARDVVPDGSDFKGERLTVQFARGPRRKENFPGPMDRPNMPRPRRTIFRMMVSGLP-ETSW 113
Query: 209 KDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA-----FQGKVIM 263
+DL++F G DVV +E R G GFV F++ +TAI F+G +
Sbjct: 114 QDLKDFARQSGLDVVYSETG------RELGRGFVEFETANDLKTAIEKLDGREFKGSRVT 167
Query: 264 CLVIALSY 271
C+ +Y
Sbjct: 168 CIADIQTY 175
>gi|395530250|ref|XP_003767210.1| PREDICTED: ELAV-like protein 4 [Sarcophilus harrisii]
Length = 707
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 81/189 (42%), Gaps = 11/189 (5%)
Query: 73 SATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIEL 132
S TT P +S + + + SKT L+ +P T E+ R+LF G + +L
Sbjct: 359 SNTTNGPSSNSRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKL 418
Query: 133 SMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKP 191
++ G FV P +A A+N L + +T+KV+YA+ +
Sbjct: 419 VRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS--------- 469
Query: 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAE 251
NL+++ L K+L + F G ++++ ++ S G GF+ F + AE
Sbjct: 470 IRDANLYVSGLPKTMTQKELEQLFSQYG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAE 528
Query: 252 TAISAFQGK 260
AI G+
Sbjct: 529 EAIKGLNGQ 537
>gi|345493904|ref|XP_001606757.2| PREDICTED: protein alan shepard-like isoform 1 [Nasonia
vitripennis]
Length = 559
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 81/171 (47%), Gaps = 19/171 (11%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSP 151
Q+ E+ SKT L + + +T +D+ + Q+GT+ + + + N+ +G FV SP
Sbjct: 232 QQSEQLSKTNLYIRGLNQNTTDKDLVNMCSQYGTITSTKAILDKNTNKCKGYGFVDFESP 291
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDL 211
A A+ L + + ++ AK ++++P NL+IANL + D+
Sbjct: 292 VAAEGAVKALVA-----KGIQAQMAKQQEQDPT-----------NLYIANLPLSFKENDV 335
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
E +++ V+S I D +S G GF +SK+ E I F GK +
Sbjct: 336 -EGLLAQYGQVISTR-ILRDTSGQSKGVGFARMESKEKCEQIIQMFNGKAL 384
>gi|340712090|ref|XP_003394597.1| PREDICTED: protein alan shepard-like isoform 1 [Bombus terrestris]
Length = 540
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 81/171 (47%), Gaps = 19/171 (11%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSP 151
Q+ E+ SKT L + + +T +D+ + Q+GT+ + + + N+ +G FV SP
Sbjct: 212 QQAEQLSKTNLYIRGLNQNTTDKDLVNMCSQYGTITSTKAILDKNTNKCKGYGFVDFESP 271
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDL 211
A A+ L + + ++ AK ++++P NL+IANL + D+
Sbjct: 272 VAAEGAVKALVA-----KGIQAQMAKQQEQDPT-----------NLYIANLPLSFKENDV 315
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
E +++ V+S I D +S G GF +SK+ E I F GK +
Sbjct: 316 -EGLLAQYGQVISTR-ILRDTAGQSKGVGFARMESKEKCEQIIQMFNGKAL 364
>gi|117557982|gb|AAI27339.1| ELAV (embryonic lethal, abnormal vision)-like 2 (Hu antigen B)
[Xenopus (Silurana) tropicalis]
Length = 346
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 75/170 (44%), Gaps = 11/170 (6%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGS 150
E E SKT L+ +P T E++++LF G + +L ++ G FV
Sbjct: 29 ESSNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYID 88
Query: 151 PDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKD 210
P +A A+N L + +T+KV+YA+ + NL+++ L K+
Sbjct: 89 PKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQKE 139
Query: 211 LREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
L + F G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 140 LEQLFSQYG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 188
>gi|350398873|ref|XP_003485334.1| PREDICTED: protein alan shepard-like [Bombus impatiens]
Length = 478
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 81/171 (47%), Gaps = 19/171 (11%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSP 151
Q+ E+ SKT L + + +T +D+ + Q+GT+ + + + N+ +G FV SP
Sbjct: 141 QQAEQLSKTNLYIRGLNQNTTDKDLVNMCSQYGTITSTKAILDKNTNKCKGYGFVDFESP 200
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDL 211
A A+ L + + ++ AK ++++P NL+IANL + D+
Sbjct: 201 VAAEGAVKALVA-----KGIQAQMAKQQEQDPT-----------NLYIANLPLSFKENDV 244
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
E +++ V+S I D +S G GF +SK+ E I F GK +
Sbjct: 245 -EGLLAQYGQVISTR-ILRDTAGQSKGVGFARMESKEKCEQIIQMFNGKAL 293
>gi|427415488|ref|ZP_18905672.1| RRM domain-containing RNA-binding protein [Leptolyngbya sp. PCC
7375]
gi|425756163|gb|EKU97020.1| RRM domain-containing RNA-binding protein [Leptolyngbya sp. PCC
7375]
Length = 90
Score = 62.8 bits (151), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/76 (42%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSKN-RNRGLAFVTMGSPDEATAALNNLESYE 165
N+ + +T+ED+ A+F ++GTV + L + R RG AFV MG+ E TAA+ L+ E
Sbjct: 7 NLSYDATNEDLTAVFAEYGTVKSVHLPTDRETGRMRGFAFVEMGAESEETAAIEALDGAE 66
Query: 166 FEGRTLKVNYAKIKKK 181
+ GR LKVN AK +++
Sbjct: 67 WMGRDLKVNKAKPREE 82
>gi|313232178|emb|CBY09289.1| unnamed protein product [Oikopleura dioica]
Length = 611
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 87/189 (46%), Gaps = 26/189 (13%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N+P + +F +HG+V+ + L+ ++R FV+ + + A +
Sbjct: 177 TNVFIKNLPAEWDDAKLTEVFGEHGSVMSVALATDENGKSRQFGFVSFETHECAEKVVEK 236
Query: 161 LESYEFEGRT---------------LKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFE 205
L EFEG+ LKV + K+K + + + + NL++ NL
Sbjct: 237 LHDKEFEGKKIFVGRAQKKAERQAELKVKFEKLKHE------RNQRYQGVNLYVKNLDDS 290
Query: 206 ARAKDLREFFISEGWDVVSAEVIFHDNPR--RSAGYGFVSFKSKKVAETAISAFQGKVIM 263
LRE F G ++ S++V+ + RS G+GFV F S + A A++ G++I
Sbjct: 291 ITDDILREHFAPYG-NITSSKVMTDTDVEGTRSKGFGFVCFTSAEEATKAVTEMNGRIIA 349
Query: 264 C--LVIALS 270
L +AL+
Sbjct: 350 SKPLYVALA 358
>gi|226499830|ref|NP_001140942.1| uncharacterized protein LOC100273020 [Zea mays]
gi|194701856|gb|ACF85012.1| unknown [Zea mays]
Length = 473
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 74/181 (40%), Gaps = 13/181 (7%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVTMGSPDEATAALNNL 161
L N+ W E +R FE G + + ++ R+RG +V A AA
Sbjct: 227 LFVGNLSWNVDEEWLRREFESFGELSGVRIMTERETGRSRGFGYVEYADASSAKAAYEAK 286
Query: 162 ESYEFEGRTLKVNYAKIKKKNPFPP-----VQPKPFA------TFNLFIANLSFEARAKD 210
+ E +GRT+ ++YAK + N P + + F + LF+ NL F
Sbjct: 287 KDTELDGRTINLDYAKPRDANSQAPREKAQTRARSFGDQTSPESNTLFVGNLVFGVDENA 346
Query: 211 LREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALS 270
+RE F +G + + R GYG+V F S A A++ QG I I L
Sbjct: 347 VREVFEGQGQ-IQGVRLPTDAETGRPKGYGYVEFSSVDEARQALNELQGTDIGGRAIRLD 405
Query: 271 Y 271
+
Sbjct: 406 F 406
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 117 IRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175
+R +FE G + + L ++ R +G +V S DEA ALN L+ + GR +++++
Sbjct: 347 VREVFEGQGQIQGVRLPTDAETGRPKGYGYVEFSSVDEARQALNELQGTDIGGRAIRLDF 406
Query: 176 A 176
+
Sbjct: 407 S 407
>gi|307185103|gb|EFN71298.1| RNA-binding motif, single-stranded-interacting protein 1
[Camponotus floridanus]
Length = 353
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 8/171 (4%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSP 151
Q+ E+ SKT L + + +T +D+ + Q+GT+ + + + N+ +G FV SP
Sbjct: 13 QQAEQLSKTNLYIRGLNQNTTDKDLVNMCSQYGTITSTKAILDKNTNKCKGYGFVDFESP 72
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDL 211
A A+ L + + + KV +++ + P NL+IANL + D+
Sbjct: 73 MAAEGAVKALVAKGIQAQMAKVGIWLLRRLDSQQEQDPT-----NLYIANLPLTFKENDV 127
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
E +++ V+S I D +S G GF +SK+ E I F GK +
Sbjct: 128 -EALLAQYGQVISTR-ILRDTSGQSKGVGFARMESKEKCEQIIQMFNGKAL 176
>gi|303326560|ref|ZP_07357003.1| RNA-binding protein [Desulfovibrio sp. 3_1_syn3]
gi|345893773|ref|ZP_08844565.1| hypothetical protein HMPREF1022_03225 [Desulfovibrio sp.
6_1_46AFAA]
gi|302864476|gb|EFL87407.1| RNA-binding protein [Desulfovibrio sp. 3_1_syn3]
gi|345045809|gb|EGW49708.1| hypothetical protein HMPREF1022_03225 [Desulfovibrio sp.
6_1_46AFAA]
Length = 88
Score = 62.8 bits (151), Expect = 2e-07, Method: Composition-based stats.
Identities = 35/85 (41%), Positives = 50/85 (58%), Gaps = 7/85 (8%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIEL-SMHSKNRNRGLAFVTMGSPDEATAALNNLESYE 165
N+PW++ E ++ LF ++G VL ++L S R RG FV M EA AA+ L+++
Sbjct: 9 NLPWSANEEQVQDLFAEYGNVLSVKLVSDRETGRARGFGFVEM-EDGEADAAIEALDNFS 67
Query: 166 FEGRTLKVNYAKIKKKNPFPPVQPK 190
F GRTL+VN AK P P QP+
Sbjct: 68 FGGRTLRVNEAK-----PRAPRQPR 87
>gi|89266927|emb|CAJ82281.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B) [Xenopus (Silurana) tropicalis]
Length = 374
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 75/170 (44%), Gaps = 11/170 (6%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGS 150
E E SKT L+ +P T E++++LF G + +L ++ G FV
Sbjct: 58 ESSNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYID 117
Query: 151 PDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKD 210
P +A A+N L + +T+KV+YA+ + NL+++ L K+
Sbjct: 118 PKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQKE 168
Query: 211 LREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
L + F G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 169 LEQLFSQYG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 217
>gi|332535188|ref|ZP_08410995.1| hypothetical protein PH505_cg00280 [Pseudoalteromonas haloplanktis
ANT/505]
gi|332035407|gb|EGI71907.1| hypothetical protein PH505_cg00280 [Pseudoalteromonas haloplanktis
ANT/505]
Length = 159
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 61/106 (57%), Gaps = 5/106 (4%)
Query: 80 FVDSSSAAAVNTEQREEEYSKTR-LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKN 138
+ + + AA++++ EE KT+ L N+P+ + +RALFE+ G V ++ L + KN
Sbjct: 43 LIGAIATAAISSDVTEEAEVKTKTLYVGNLPYRANEGVVRALFEEQGKVFNVRL-LKDKN 101
Query: 139 --RNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKN 182
+ RG FV M D A A+ NL EF+ RTLKV AK K+++
Sbjct: 102 TGKRRGFGFVEMAQAD-ADNAIANLNDSEFQQRTLKVREAKQKQED 146
>gi|432103090|gb|ELK30412.1| ELAV-like protein 2 [Myotis davidii]
Length = 416
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 85/181 (46%), Gaps = 13/181 (7%)
Query: 81 VDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNR 139
++++ ++ V++ E+ SKT L+ +P T E++++LF G + +L +
Sbjct: 78 INNNCSSPVDSGNTED--SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQ 135
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI 199
+ G FV P +A A+N L + +T+KV+YA+ + NL++
Sbjct: 136 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYV 186
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ L K+L + F S+ ++++ ++ S G GF+ F + AE AI G
Sbjct: 187 SGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 245
Query: 260 K 260
+
Sbjct: 246 Q 246
>gi|47219550|emb|CAG09904.1| unnamed protein product [Tetraodon nigroviridis]
Length = 623
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 89/181 (49%), Gaps = 14/181 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N E ++ LF+++G L +++ ++RG F++ ++A A+ +
Sbjct: 191 TNVYIKNFGDDMNDERLKELFDKYGKTLSVKVMTDPTGKSRGFGFISYEKHEDANKAVED 250
Query: 161 LESYEFEGRTLKVNYAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDL 211
+ E G+T+ V A+ K K F ++ + + + NL+I NL + L
Sbjct: 251 MNGTELNGKTVFVGRAQKKMERQAELKRKFEMLKQERISRYQGVNLYIKNLDDTIDDEKL 310
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIAL 269
R+ F G + SA+V+ + RS G+GFV F S + A A++ G+++ L +AL
Sbjct: 311 RKEFSPFG-SITSAKVMLEEG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVAL 367
Query: 270 S 270
+
Sbjct: 368 A 368
>gi|363744745|ref|XP_003643117.1| PREDICTED: ELAV-like protein 2 isoform 2 [Gallus gallus]
Length = 366
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 76/165 (46%), Gaps = 11/165 (6%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEAT 155
E SKT L+ +P + T E++++LF G + +L ++ G FV P +A
Sbjct: 42 EDSKTNLIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDAE 101
Query: 156 AALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFF 215
A+N L + +T+KV+YA+ + NL+++ L K+L + F
Sbjct: 102 KAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQKELEQLF 152
Query: 216 ISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
S+ ++++ ++ S G GF+ F + AE AI G+
Sbjct: 153 -SQYGRIITSRILVDQVTGMSRGVGFIRFDKRIEAEEAIKGLNGQ 196
>gi|444316792|ref|XP_004179053.1| hypothetical protein TBLA_0B07170 [Tetrapisispora blattae CBS 6284]
gi|387512093|emb|CCH59534.1| hypothetical protein TBLA_0B07170 [Tetrapisispora blattae CBS 6284]
Length = 470
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 85/190 (44%), Gaps = 8/190 (4%)
Query: 82 DSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNR 141
+S++ N + E S L N+ + + ++ F+ G + ++++ + N+
Sbjct: 64 ESANVVPANAIRGGRETSDKILYVGNLDKSINEDSLKQYFQVGGPIANVKIIVDKNNKYC 123
Query: 142 GLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIAN 201
AFV +A AL L E + +K+N+A F Q TFNLFI +
Sbjct: 124 NYAFVEYLKHHDANVALQTLNGKHIEKKIVKINWA-------FQSQQSSNDDTFNLFIGD 176
Query: 202 LSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKV 261
L+ + + L F + V A V++ RS GYGF SF ++ A+ A+ QGK
Sbjct: 177 LNIDVNDESLTAAF-KDFPSFVQAHVMWDMQTGRSRGYGFASFSTQNDAQLAMDQMQGKE 235
Query: 262 IMCLVIALSY 271
+ I +++
Sbjct: 236 LNGRPIRINW 245
>gi|224068610|ref|XP_002302783.1| predicted protein [Populus trichocarpa]
gi|222844509|gb|EEE82056.1| predicted protein [Populus trichocarpa]
Length = 491
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 75/160 (46%), Gaps = 6/160 (3%)
Query: 108 VPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFV---TMGSPDEATAALNNLES 163
+P T+T E+IR+LFE+HG+V+++ L + + + FV T D A AL+N +
Sbjct: 87 IPRTTTEENIRSLFEEHGSVVEVVLPRDKRTGQQQAYCFVKYATFEEADRAIRALHNQHT 146
Query: 164 YEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVV 223
E KV YA +++ P L++ +++ A +++ E F G V
Sbjct: 147 IPGEVAPFKVRYADGERERPVARCSMVGGFVDKLYVGSINKLASKQEIEEIFSPYGH--V 204
Query: 224 SAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
I D ++S G FV F + +A AI G + M
Sbjct: 205 EDVYIARDELKQSRGCAFVKFAHRDMALAAIKGLNGTLTM 244
>gi|213625406|gb|AAI70539.1| Xel-1 protein [Xenopus laevis]
Length = 388
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 75/170 (44%), Gaps = 11/170 (6%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGS 150
E E SKT L+ +P T E++++LF G + +L ++ G FV
Sbjct: 57 ESNNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYID 116
Query: 151 PDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKD 210
P +A A+N L + +T+KV+YA+ + NL+++ L K+
Sbjct: 117 PKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQKE 167
Query: 211 LREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
L + F G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 168 LEQLFSQYG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 216
>gi|62739311|gb|AAH94189.1| Elavl2-a protein [Xenopus laevis]
Length = 359
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 76/170 (44%), Gaps = 11/170 (6%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGS 150
E E SKT L+ +P T E++++LF G + +L ++ G FV
Sbjct: 28 ESNNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYID 87
Query: 151 PDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKD 210
P +A A+N L + +T+KV+YA+ + NL+++ L K+
Sbjct: 88 PKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQKE 138
Query: 211 LREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
L + F S+ ++++ ++ S G GF+ F + AE AI G+
Sbjct: 139 LEQLF-SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 187
>gi|391344304|ref|XP_003746441.1| PREDICTED: ELAV-like protein 4-like [Metaseiulus occidentalis]
Length = 394
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 70/159 (44%), Gaps = 10/159 (6%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEAT 155
E SKT L+ +P T T E+IR+LF G V +L ++ G FV + A
Sbjct: 63 EDSKTNLIVNYLPQTMTQEEIRSLFSSIGEVESCKLIRDKVTGQSLGYGFVNYVCAEAAE 122
Query: 156 AALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFF 215
A+N L + +T+KV+YA+ + NL+++ L +DL + F
Sbjct: 123 KAINTLNGLRLQNKTIKVSYARPSS---------EAIKGANLYVSGLPKSMTQQDLEQLF 173
Query: 216 ISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAI 254
G + S + + S G GFV F + AE AI
Sbjct: 174 APYGGIITSRILCDNITAGLSKGVGFVRFDQRVEAERAI 212
>gi|389608229|dbj|BAM17726.1| polyA-binding protein [Papilio xuthus]
Length = 619
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 91/196 (46%), Gaps = 20/196 (10%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHED-----IRALFEQHGTVLDIELSMHSKNRNRGLAFV 146
++RE+E + + NV + ED +R +FE++G + ++ +RG FV
Sbjct: 178 KEREKELGEKAKLFTNVYVKNFGEDFSDEMLREMFEKYGRITSHKVMYKEDGSSRGFGFV 237
Query: 147 TMGSPDEATAALNNLESYEF-EGRTLKVNYAKIKK------KNPFPPVQPKPFATF---N 196
PD A A L E EG+ L V A+ K K F ++ + + N
Sbjct: 238 AFEDPDAAERACMELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVN 297
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
L++ NL + LR+ F G + SA+V+ D RS G+GFV F S + A A++
Sbjct: 298 LYVKNLDDTIDDERLRKEFAPFGT-ITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTE 354
Query: 257 FQGKVIMC--LVIALS 270
G+++ L +AL+
Sbjct: 355 MNGRIVGTKPLYVALA 370
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 73/155 (47%), Gaps = 15/155 (9%)
Query: 114 HEDIR--ALFEQ---HGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFE 167
H DI LFE+ G VL I + R+ G A+V P +A AL + +
Sbjct: 19 HSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALEGMNFDIIK 78
Query: 168 GRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEV 227
GR +++ ++ +++P + N+FI NL K + + F + G +++S +V
Sbjct: 79 GRPIRIMWS---QRDP----SLRKSGVGNVFIKNLDKTIDNKAMYDTFTAFG-NILSCKV 130
Query: 228 IFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
D S GYGFV F++++ A +I G ++
Sbjct: 131 A-QDETGASKGYGFVHFETEEAANKSIEKVNGMLL 164
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/158 (20%), Positives = 68/158 (43%), Gaps = 3/158 (1%)
Query: 106 QNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYE 165
+N+ T ++ + F G +L +++ ++G FV + + A ++ +
Sbjct: 104 KNLDKTIDNKAMYDTFTAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVNGML 163
Query: 166 FEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSA 225
G+ + V I +K + K N+++ N + + LRE F E + +++
Sbjct: 164 LNGKKVYVGRF-IPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLREMF--EKYGRITS 220
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
+ + S G+GFV+F+ AE A GK ++
Sbjct: 221 HKVMYKEDGSSRGFGFVAFEDPDAAERACMELNGKELV 258
>gi|162455692|ref|YP_001618059.1| RNA recognition motif-containing protein [Sorangium cellulosum So
ce56]
gi|161166274|emb|CAN97579.1| RNA-binding region RNP-1 (RNA recognition motif) [Sorangium
cellulosum So ce56]
Length = 139
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIEL-SMHSKNRNRGLAFVTMGSPDEATAALN 159
TRL N+P+++T ++A F Q G V D+ + + ++RG FVTMG+P++A A+
Sbjct: 3 TRLYVGNLPFSATKASVQAAFAQSGEVTDVHIVTDRESGQSRGFGFVTMGTPEQAQQAIE 62
Query: 160 NLESYEFEGRTLKVNYAK 177
N+ +GR L+VN A+
Sbjct: 63 NMNGAMMDGRPLRVNEAE 80
>gi|156845624|ref|XP_001645702.1| hypothetical protein Kpol_1043p34 [Vanderwaltozyma polyspora DSM
70294]
gi|156116369|gb|EDO17844.1| hypothetical protein Kpol_1043p34 [Vanderwaltozyma polyspora DSM
70294]
Length = 442
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 75/156 (48%), Gaps = 23/156 (14%)
Query: 112 STHEDI-RALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRT 170
S +EDI + F+ G + ++++ ++ KN AFV +A+ AL L + E T
Sbjct: 87 SINEDILKQYFQVGGPITNVKV-INDKNNEANYAFVEYSQHHDASIALKTLNGKQIENNT 145
Query: 171 LKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFE-------ARAKDLREFFISEGWDVV 223
LK+N+A ++N TFNLFI +L+ + A KD + F +
Sbjct: 146 LKINWAFQSQQNTTSD------ETFNLFIGDLNVDVDDETLVAAFKDFKSF--------I 191
Query: 224 SAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
A V++ RS GYGFVSF + A+ A+ QG
Sbjct: 192 QAHVMWDMQTGRSRGYGFVSFSNLDDAQVAMDTMQG 227
Score = 38.5 bits (88), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 25/38 (65%)
Query: 139 RNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176
R+RG FV+ + D+A A++ ++ E GR L++N+A
Sbjct: 203 RSRGYGFVSFSNLDDAQVAMDTMQGSELNGRQLRINWA 240
Score = 37.0 bits (84), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 6/103 (5%)
Query: 88 AVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVT 147
AV+ R T + N+P +T D+ L + G +LD + H +G F+
Sbjct: 311 AVDDMIRRAPQRVTTVYIGNIPHFATEADLIPLLQNFGFILDFK---HYP--EKGNCFIK 365
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYAKIKKK-NPFPPVQP 189
+ ++A + L ++ F+GR LK + K K P PP P
Sbjct: 366 YDTHEQAAVCIVVLANFPFQGRNLKTGWGKEKSTFMPMPPQDP 408
>gi|427786813|gb|JAA58858.1| Putative rna-binding protein elav/hu rrm superfamily [Rhipicephalus
pulchellus]
Length = 341
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 80/168 (47%), Gaps = 19/168 (11%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEA 154
++ SKT L + + T+T +D+ L +G ++ + + N+ +G FV SP A
Sbjct: 65 DQLSKTNLYIKGLTHTTTDKDLLNLCAPYGNIISTKAILDKDTNKCKGYGFVDFESPLAA 124
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
A+ L++ + ++ AK ++++P NL++ANL +DL +
Sbjct: 125 EKAVKALQA-----QGVQAQMAKQQEQDPT-----------NLYMANLPLYMAEQDLEQL 168
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
+ G V + I DN +S G GF +SK+ E I+ F GKV+
Sbjct: 169 LQAHG--AVISTRILRDNSAQSRGVGFARMESKEKCEQIIATFNGKVL 214
>gi|168017537|ref|XP_001761304.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687644|gb|EDQ74026.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 160
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 82/167 (49%), Gaps = 13/167 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRN-RGLAFV---TMGSPDEATA 156
+L +VP T T +++R +F +HG V+++ + + N +G FV T+ D A
Sbjct: 2 VKLFVGSVPRTITEDEVRPMFAEHGNVIEVAIIKDKRTGNQQGCCFVKYSTVEEADRAIR 61
Query: 157 ALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFI 216
AL+N ++ ++V YA ++ V+ K LF+ +L+ +A K++ E F+
Sbjct: 62 ALHNQKTLPGGVAPVQVRYAD-GERERLGAVEHK------LFVGSLNKQASEKEIEELFL 114
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
G V I D ++S G F+ + + A+ AI+A G IM
Sbjct: 115 PYGR--VDDVYIMRDEQKQSRGCAFIKYSQRDHAQAAINALNGVHIM 159
>gi|348509181|ref|XP_003442130.1| PREDICTED: ELAV-like protein 3-like isoform 1 [Oreochromis
niloticus]
gi|410902663|ref|XP_003964813.1| PREDICTED: ELAV-like protein 3-like isoform 1 [Takifugu rubripes]
gi|432868072|ref|XP_004071397.1| PREDICTED: ELAV-like protein 3-like isoform 1 [Oryzias latipes]
Length = 345
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 75/163 (46%), Gaps = 11/163 (6%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T E+ ++LF G + +L ++ G FV P++A A
Sbjct: 36 SKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKA 95
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + + +T+KV+YA+ + NL+++ L KD+ + F S
Sbjct: 96 INTLNGLKLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMSQKDMEQLF-S 145
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
+ ++++ ++ S G GF+ F + AE AI G+
Sbjct: 146 QYGRIITSRILVDQVTGISRGVGFIRFDKRNEAEEAIKGLNGQ 188
>gi|226222462|gb|ACO38649.1| nucleolin-like protein [Rattus norvegicus]
Length = 569
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 91/173 (52%), Gaps = 13/173 (7%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAAL 158
SKT LV N+ +++T E ++ +FE+ T + + + H K++ G AF+ S ++A AL
Sbjct: 344 SKT-LVLSNLSYSATEETLQEVFEK-ATFIKVPQNPHGKSK--GYAFIEFASFEDAKEAL 399
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISE 218
N+ E EGRT+++ +++ P + +P T LF+ LS + + L+E F E
Sbjct: 400 NSCNKMEIEGRTIRL---ELQGPRGSPNARSQPSKT--LFVKGLSEDTTEETLKESF--E 452
Query: 219 GWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271
G V A ++ S G+GFV F S++ A+TA A + I + L +
Sbjct: 453 G--SVRARIVTDRETGSSKGFGFVDFNSEEDAKTAKEAMEDGEIDGNKVTLDW 503
Score = 41.2 bits (95), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 84/171 (49%), Gaps = 15/171 (8%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKN-RNRGLAFVTMGSPDEATAALNNL 161
L+A+N+ + T ++++ +FE +E+ + S++ R++G+A++ S +A L
Sbjct: 255 LLAKNLSFNITEDELKEVFEDA-----VEIRLVSQDGRSKGIAYIEFKSEADAEKNLEEK 309
Query: 162 ESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA--TFNLFIANLSFEARAKDLREFFISEG 219
+ E +GR++ + Y K + + ++ + L ++NLS+ A + L+E F
Sbjct: 310 QGAEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKAT 369
Query: 220 WDVVSAEVIFHDNPR-RSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIAL 269
+ + NP +S GY F+ F S + A+ A+++ I I L
Sbjct: 370 F------IKVPQNPHGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRL 414
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 55/132 (41%), Gaps = 14/132 (10%)
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI 199
NR +V S ++ AL E G LKV +IK + P K A L
Sbjct: 206 NRKFGYVDFESAEDLEKAL------ELTG--LKVFGNEIKLEKPKGRDSKKVRAARTLLA 257
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
NLSF +L+E F D V ++ D RS G ++ FKS+ AE + QG
Sbjct: 258 KNLSFNITEDELKEVF----EDAVEIRLVSQDG--RSKGIAYIEFKSEADAEKNLEEKQG 311
Query: 260 KVIMCLVIALSY 271
I ++L Y
Sbjct: 312 AEIDGRSVSLYY 323
>gi|391330636|ref|XP_003739762.1| PREDICTED: nucleolysin TIAR-like [Metaseiulus occidentalis]
Length = 364
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 83/171 (48%), Gaps = 8/171 (4%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLE 162
L N+ T + + ALF Q G + ++ +H + FV + +A++A+ +
Sbjct: 15 LYVGNLDSGVTEDLVCALFSQMGQIKGCKI-IHEPGSDP-YCFVEFVNHSDASSAITAMN 72
Query: 163 SYEFEGRTLKVNYAK--IKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGW 220
+ GR L+VN+A I+++ P P K ++F+ +LS + DLRE F G
Sbjct: 73 ARMCLGRELRVNWASSAIQQQTPHRPDTSK---HHHIFVGDLSPQIETSDLREAFSPFG- 128
Query: 221 DVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271
++ V+ ++S GYGFVSF +K+ AE AI G + I ++
Sbjct: 129 EISDCRVVKDATTQKSKGYGFVSFTNKQDAENAIHTMDGSWLGSRAIRTNW 179
>gi|354491615|ref|XP_003507950.1| PREDICTED: ELAV-like protein 2 isoform 3 [Cricetulus griseus]
Length = 356
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 85/181 (46%), Gaps = 13/181 (7%)
Query: 81 VDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNR 139
V+++ ++ V++ + E+ SKT L+ +P T E++++LF G + +L +
Sbjct: 31 VNNNCSSPVDSGKTED--SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQ 88
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI 199
+ G FV P +A A+N L + +T+KV+YA+ + NL++
Sbjct: 89 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYV 139
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ L K+L + F G ++++ ++ S G GF+ F + AE AI G
Sbjct: 140 SGLPKTMTQKELEQLFSQYGR-IITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 198
Query: 260 K 260
+
Sbjct: 199 Q 199
>gi|326512286|dbj|BAJ96124.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 236
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 76/165 (46%), Gaps = 10/165 (6%)
Query: 104 VAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRN-RGLAFVTMGSPDEATAALNNLE 162
V + E+IR LF++ G + ++LS + N RGLAFVT S + A +L L+
Sbjct: 60 VGEGAESYECEEEIRELFDRFGPIRSLQLSRFPDSGNFRGLAFVTFESDEVALKSLE-LD 118
Query: 163 SYEFEGRTLKVNYAKI------KKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFI 216
Y+ R ++V +I +KK F KP + ++ NLS+ KDLR+FF
Sbjct: 119 GYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFFK 178
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKV 261
S + S S G+ V F+ + E A+ Q ++
Sbjct: 179 SS--RIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQSEL 221
>gi|344248615|gb|EGW04719.1| ELAV-like protein 2 [Cricetulus griseus]
Length = 347
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 85/181 (46%), Gaps = 13/181 (7%)
Query: 81 VDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNR 139
V+++ ++ V++ + E+ SKT L+ +P T E++++LF G + +L +
Sbjct: 21 VNNNCSSPVDSGKTED--SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQ 78
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI 199
+ G FV P +A A+N L + +T+KV+YA+ + NL++
Sbjct: 79 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYV 129
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ L K+L + F G ++++ ++ S G GF+ F + AE AI G
Sbjct: 130 SGLPKTMTQKELEQLFSQYG-RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Query: 260 K 260
+
Sbjct: 189 Q 189
>gi|238487096|ref|XP_002374786.1| pre-RNA splicing factor Srp2, putative [Aspergillus flavus
NRRL3357]
gi|317143800|ref|XP_001819713.2| pre-RNA splicing factor Srp2 [Aspergillus oryzae RIB40]
gi|220699665|gb|EED56004.1| pre-RNA splicing factor Srp2, putative [Aspergillus flavus
NRRL3357]
Length = 300
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 81/182 (44%), Gaps = 24/182 (13%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATA 156
E S TRL N+P T +DI F HG+ E+ + + G F+ +A
Sbjct: 3 EVSSTRLYLGNLPRNVTKQDIEEHFSTHGSGKITEIKLMN-----GFGFIEYEDAMDARD 57
Query: 157 ALNNLESYEFEGRTLKVNYAK-IKKKNPFP-----PVQPKPFAT-FNLFIANLSFEARAK 209
+ +F+G L V +A+ ++K FP P P+P T + + ++ L E +
Sbjct: 58 VVPAFHGSDFKGERLTVQFARGPRRKENFPGPMDRPNMPRPRRTVYRMMVSGLP-ETSWQ 116
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA-----FQGKVIMC 264
DL++F G DVV +E R G GFV F++ +TAI F+G + C
Sbjct: 117 DLKDFARGAGLDVVYSETG------REPGRGFVEFETANDLKTAIEKLDGRDFKGSRVSC 170
Query: 265 LV 266
+
Sbjct: 171 VA 172
>gi|427789717|gb|JAA60310.1| Putative proline and glutamine-rich splicing factor sfpq
[Rhipicephalus pulchellus]
Length = 408
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 67/158 (42%), Gaps = 22/158 (13%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAAL 158
++R+ N+P T T +D+R L E +G V D+ + N +G AFV M SP A A +
Sbjct: 29 DRSRIYIGNLPHTVTEDDVRELVEPYGAVRDVFV-----NSQKGFAFVKMDSPQSAEAVV 83
Query: 159 NNLESYEFEGRTLKVNYAKIKK----------KNPFPPVQPKPFATFNLFIANLSFEARA 208
NL+ GR L+V A K P KP LF+ NL
Sbjct: 84 TNLDMNLRRGRRLRVTPASNAKGKLAKALGHGGGAVRPRDEKPGGRCRLFVGNLPASTGE 143
Query: 209 KDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKS 246
++LR F G + F ++ G+GFV S
Sbjct: 144 EELRRLFSEHG----EVQETFLNS---EKGFGFVKMAS 174
Score = 43.9 bits (102), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 70/162 (43%), Gaps = 26/162 (16%)
Query: 95 EEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEA 154
E+ + RL N+P ++ E++R LF +HG V + L N +G FV M S + A
Sbjct: 124 EKPGGRCRLFVGNLPASTGEEELRRLFSEHGEVQETFL-----NSEKGFGFVKMASYEAA 178
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNL--FIANLSFEARAKDLR 212
AA L+ +GR ++V +A Q + NL +++N E+
Sbjct: 179 EAAKAALDDALVDGRRIQVRFA----------TQGTCLSVRNLGPWVSNELLESAFSLFG 228
Query: 213 EFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAI 254
E V V+ D+ RS G G V F K A+ A+
Sbjct: 229 E---------VERAVVIVDDRGRSVGEGIVEFARKPAAQAAL 261
>gi|308493359|ref|XP_003108869.1| hypothetical protein CRE_11982 [Caenorhabditis remanei]
gi|308247426|gb|EFO91378.1| hypothetical protein CRE_11982 [Caenorhabditis remanei]
Length = 404
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 76/164 (46%), Gaps = 13/164 (7%)
Query: 112 STHED-IRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRT 170
S ED I LF Q G+V ++ N AFV +A+ AL + R
Sbjct: 54 SVSEDLIATLFNQIGSVTKTKVIFDGAND--PYAFVEFLDHSQASQALQTMNKRLLLDRE 111
Query: 171 LKVNYAKIKKKNPFPPVQPKPFAT---FNLFIANLSFEARAKDLREFFISEGWDVVSAEV 227
+KVN+A P QP T F++F+ +LS E + LRE F G DV A+V
Sbjct: 112 MKVNWA------VEPGQQPSKVDTTRHFHVFVGDLSSEVDNQKLREAFQPFG-DVSDAKV 164
Query: 228 IFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271
I N +S GYGFVS+ ++ AE AI G+ + I ++
Sbjct: 165 IRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNW 208
>gi|363744747|ref|XP_001233484.2| PREDICTED: ELAV-like protein 2 isoform 1 [Gallus gallus]
Length = 345
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 75/165 (45%), Gaps = 11/165 (6%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEAT 155
E SKT L+ +P + T E++++LF G + +L ++ G FV P +A
Sbjct: 34 EDSKTNLIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDAE 93
Query: 156 AALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFF 215
A+N L + +T+KV+YA+ + NL+++ L K+L + F
Sbjct: 94 KAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQKELEQLF 144
Query: 216 ISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 145 SQYG-RIITSRILVDQVTGMSRGVGFIRFDKRIEAEEAIKGLNGQ 188
>gi|195328687|ref|XP_002031046.1| GM24242 [Drosophila sechellia]
gi|194119989|gb|EDW42032.1| GM24242 [Drosophila sechellia]
Length = 244
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 76/164 (46%), Gaps = 19/164 (11%)
Query: 94 REEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGL----AFVTMG 149
R E KT L+ +P T ++ LF ++G + ++ H R+ G+ FV
Sbjct: 34 RTEVRDKTNLILNYLPQDMTESELHRLFSKYGEIRKAKVIRH---RDTGISCCYGFVDFV 90
Query: 150 SPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAK 209
S +A AA+NNL YE G+ LKV +A+ P + NL++ANL K
Sbjct: 91 SERQAAAAVNNLNGYETRGKRLKVAFAR-----------PSEYENTNLYVANLPTYMDEK 139
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETA 253
+RE F G +++ ++ H + G F+ F+ + AE A
Sbjct: 140 KIRELFAPFG-NILDVTLLRHRFNNKFRGVAFLDFELVRDAEEA 182
Score = 44.7 bits (104), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Query: 94 REEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPD 152
R EY T L N+P + IR LF G +LD+ L H N+ RG+AF+
Sbjct: 118 RPSEYENTNLYVANLPTYMDEKKIRELFAPFGNILDVTLLRHRFNNKFRGVAFLDFELVR 177
Query: 153 EATAALNNLESYEFEG--RTLKVNYAKIKKKNP 183
+A A ++ + +G R LKV + + K P
Sbjct: 178 DAEEAKYGMDRHMIKGAFRPLKVKFVERAKSGP 210
>gi|73965401|ref|XP_537585.2| PREDICTED: ELAV-like protein 1-like [Canis lupus familiaris]
Length = 326
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 77/169 (45%), Gaps = 11/169 (6%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGS 150
E ++ +T L+ +P T +++R+LF G V +L + G F+ +
Sbjct: 11 EDCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFLNYVT 70
Query: 151 PDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKD 210
+A A+N L + +T+KV+YA+ P V NL+I+ L KD
Sbjct: 71 AKDAERAINTLNGLRLQSKTIKVSYAR-----PSSEV----IKDANLYISGLPRTMTQKD 121
Query: 211 LREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ + F S W ++++ V+ S G F+ F + AE AI++F G
Sbjct: 122 VEDTF-SRFWRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
Score = 37.7 bits (86), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 196 NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
NL + L +LR F S G +V SA++I S GYGF+++ + K AE AI+
Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIG-EVESAKLIRDKVAGHSLGYGFLNYVTAKDAERAIN 79
Query: 256 AFQGKVIMCLVIALSY 271
G + I +SY
Sbjct: 80 TLNGLRLQSKTIKVSY 95
>gi|397576490|gb|EJK50286.1| hypothetical protein THAOC_30767 [Thalassiosira oceanica]
Length = 397
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 59/114 (51%), Gaps = 5/114 (4%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNL 161
++ N+ + +T ED++A FE+ G V+D L + RG F+ M S +++ A+ +
Sbjct: 197 KIYVGNLNFDTTAEDLKAAFEEFGDVMDCFLPVDYDGNARGFGFIQM-SDEDSLKAIEGM 255
Query: 162 ESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFF 215
EF+GRTL VN + K + P PK L++ NLS+ LRE F
Sbjct: 256 NGVEFDGRTLNVNKSLPKGQRP-AAAAPKE---TKLYVGNLSWGTEEGALRELF 305
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 51/83 (61%), Gaps = 2/83 (2%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIEL-SMHSKNRNRGLAFVTMGSPDEATAAL 158
+T+L N+ W + +R LF ++G+V+D + + ++RG AFVTMG PD+A A
Sbjct: 284 ETKLYVGNLSWGTEEGALRELFGEYGSVIDCYIPTDRETGQHRGFAFVTMG-PDDALRAA 342
Query: 159 NNLESYEFEGRTLKVNYAKIKKK 181
+ + YE +GR L+VN A+ K +
Sbjct: 343 DETDGYELDGRILRVNEAQPKGQ 365
Score = 43.9 bits (102), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 70/144 (48%), Gaps = 15/144 (10%)
Query: 122 EQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA----K 177
++ G +D+ LS + + RG AFV M + D+ AA+ L E GRT+ V+ + +
Sbjct: 120 KRGGGSVDVPLSRET-GKCRGFAFVAMTNSDDHEAAIEQLNMSEIAGRTIYVSESLPKDQ 178
Query: 178 IKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSA--EVIFHDNPRR 235
+ +K + K +++ NL+F+ A+DL+ F G DV+ V + N R
Sbjct: 179 VAEKKKKFQGRKKRDEGAKIYVGNLNFDTTAEDLKAAFEEFG-DVMDCFLPVDYDGNAR- 236
Query: 236 SAGYGFVSFKSKKVAETAISAFQG 259
G+GF+ E ++ A +G
Sbjct: 237 --GFGFIQMSD----EDSLKAIEG 254
>gi|354491611|ref|XP_003507948.1| PREDICTED: ELAV-like protein 2 isoform 1 [Cricetulus griseus]
Length = 359
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 85/181 (46%), Gaps = 13/181 (7%)
Query: 81 VDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNR 139
V+++ ++ V++ + E+ SKT L+ +P T E++++LF G + +L +
Sbjct: 21 VNNNCSSPVDSGKTED--SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQ 78
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI 199
+ G FV P +A A+N L + +T+KV+YA+ + NL++
Sbjct: 79 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYV 129
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ L K+L + F G ++++ ++ S G GF+ F + AE AI G
Sbjct: 130 SGLPKTMTQKELEQLFSQYGR-IITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Query: 260 K 260
+
Sbjct: 189 Q 189
>gi|348587078|ref|XP_003479295.1| PREDICTED: ELAV-like protein 2 isoform 2 [Cavia porcellus]
Length = 347
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 88/188 (46%), Gaps = 14/188 (7%)
Query: 75 TTQDPF-VDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELS 133
TT P ++++ ++ V++ E+ SKT L+ +P T E++++LF G + +L
Sbjct: 14 TTNGPTTINNNCSSPVDSGNTED--SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLV 71
Query: 134 MHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPF 192
++ G FV P +A A+N L + +T+KV+YA+ +
Sbjct: 72 RDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------I 122
Query: 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAET 252
NL+++ L K+L + F S+ ++++ ++ S G GF+ F + AE
Sbjct: 123 RDANLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEE 181
Query: 253 AISAFQGK 260
AI G+
Sbjct: 182 AIKGLNGQ 189
>gi|429892774|gb|AGA18932.1| heterogeneous nuclear ribonucleoprotein, partial [Drosophila
melanogaster]
Length = 417
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 8/153 (5%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSPDEATAAL 158
+ +L + W +T E++ F + G ++D + + + R+RG FVT P L
Sbjct: 2 RGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVL 61
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISE 218
N + +GRT+ K NP +PK + +F+ L DLR FF
Sbjct: 62 QN-GPHTLDGRTIDP-----KPCNPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTFFNRY 115
Query: 219 GWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAE 251
G V +++ ++S G+GF+SF+ + E
Sbjct: 116 G-KVTEVVIMYDQEKKKSRGFGFLSFEEESSVE 147
>gi|354491613|ref|XP_003507949.1| PREDICTED: ELAV-like protein 2 isoform 2 [Cricetulus griseus]
Length = 360
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 85/181 (46%), Gaps = 13/181 (7%)
Query: 81 VDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNR 139
V+++ ++ V++ + E+ SKT L+ +P T E++++LF G + +L +
Sbjct: 21 VNNNCSSPVDSGKTED--SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQ 78
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI 199
+ G FV P +A A+N L + +T+KV+YA+ + NL++
Sbjct: 79 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYV 129
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ L K+L + F G ++++ ++ S G GF+ F + AE AI G
Sbjct: 130 SGLPKTMTQKELEQLFSQYGR-IITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Query: 260 K 260
+
Sbjct: 189 Q 189
>gi|348587076|ref|XP_003479294.1| PREDICTED: ELAV-like protein 2 isoform 1 [Cavia porcellus]
Length = 360
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 87/188 (46%), Gaps = 14/188 (7%)
Query: 75 TTQDPF-VDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELS 133
TT P ++++ ++ V++ E+ SKT L+ +P T E++++LF G + +L
Sbjct: 14 TTNGPTTINNNCSSPVDSGNTED--SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLV 71
Query: 134 MHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPF 192
++ G FV P +A A+N L + +T+KV+YA+ +
Sbjct: 72 RDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------I 122
Query: 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAET 252
NL+++ L K+L + F G ++++ ++ S G GF+ F + AE
Sbjct: 123 RDANLYVSGLPKTMTQKELEQLFSQYGR-IITSRILVDQVTGISRGVGFIRFDKRIEAEE 181
Query: 253 AISAFQGK 260
AI G+
Sbjct: 182 AIKGLNGQ 189
>gi|328784054|ref|XP_393384.4| PREDICTED: protein alan shepard-like [Apis mellifera]
Length = 554
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 81/171 (47%), Gaps = 19/171 (11%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSP 151
Q+ E+ SKT L + + +T +D+ + Q+GT+ + + + N+ +G FV SP
Sbjct: 217 QQTEQLSKTNLYIRGLNQNTTDKDLVNMCSQYGTITSTKAILDKNTNKCKGYGFVDFESP 276
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDL 211
A A+ L + + ++ AK ++++P NL+IANL + D+
Sbjct: 277 VAAEGAVKALVA-----KGIQAQMAKQQEQDPT-----------NLYIANLPLSFKENDV 320
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
E +++ V+S I D +S G GF +SK+ E I F GK +
Sbjct: 321 -EGLLAQYGQVISTR-ILRDTAGQSKGVGFARMESKEKCEQIIQMFNGKAL 369
>gi|121705498|ref|XP_001271012.1| pre-RNA splicing factor Srp2, putative [Aspergillus clavatus NRRL
1]
gi|119399158|gb|EAW09586.1| pre-RNA splicing factor Srp2, putative [Aspergillus clavatus NRRL
1]
Length = 296
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 87/188 (46%), Gaps = 28/188 (14%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATA 156
E S TRL N+P T +DI F HG+ E+ + + G F+ ++A
Sbjct: 3 EVSSTRLYLGNLPRNVTKQDIEEHFSSHGSGKITEIKLMN-----GFGFIEY---EDAMD 54
Query: 157 ALNNL-ESYEFEGRTLKVNYAK-IKKKNPFP-----PVQPKPFAT-FNLFIANLSFEARA 208
A + + + +F+G L V +A+ ++K FP P P+P T F + I+ L E
Sbjct: 55 ARDVVPDGSDFKGERLTVQFARGPRRKENFPGPMDRPNMPRPRRTVFRMLISGLP-ETSW 113
Query: 209 KDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA-----FQGKVIM 263
+DL++F G DVV +E R G GFV F++ +TA+ F+G +
Sbjct: 114 QDLKDFARQSGLDVVYSETG------REPGRGFVEFETAADLKTAVDKLDGRDFKGSRVS 167
Query: 264 CLVIALSY 271
C+ S+
Sbjct: 168 CIADIQSH 175
>gi|348509183|ref|XP_003442131.1| PREDICTED: ELAV-like protein 3-like isoform 2 [Oreochromis
niloticus]
Length = 359
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 72/163 (44%), Gaps = 10/163 (6%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T E+ ++LF G + +L ++ G FV P++A A
Sbjct: 36 SKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKA 95
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + + +T+KV+YA+ + NL+++ L KD+ + F
Sbjct: 96 INTLNGLKLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMSQKDMEQLFSQ 146
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
G + S ++ S G GF+ F + AE AI G+
Sbjct: 147 YGRIITSRILVDQVTAGISRGVGFIRFDKRNEAEEAIKGLNGQ 189
>gi|449494063|ref|XP_004159436.1| PREDICTED: polyadenylate-binding protein 3-like [Cucumis sativus]
Length = 652
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 82/176 (46%), Gaps = 22/176 (12%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N+P T+T +D++ LF HGT+ + S +++ FV + D A AA+
Sbjct: 213 TNVYVKNLPETTTDDDLKNLFAPHGTITSAIVMTDSNGKSKCFGFVNFQNTDSAAAAVEK 272
Query: 161 LESYEF-EGRTLKVNYAKIK--------------KKNPFPPVQPKPFATFNLFIANLSFE 205
L+ + +TL V A+ K +K+ F +Q NL+I NL
Sbjct: 273 LDGTVLGDDKTLYVGRAQRKAEREAELRAKFEQERKSRFEKLQ-----GANLYIKNLDDH 327
Query: 206 ARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKV 261
+ L+E F SE + S +V+ D S G GFV+F S A A++ GK+
Sbjct: 328 IDDEKLKELF-SEYGTITSCKVML-DQHGLSKGSGFVAFSSPDEATKALNEMNGKM 381
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 72/144 (50%), Gaps = 10/144 (6%)
Query: 120 LFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178
LF Q V+ I + ++ ++ G A+V S +A A+ +L G+ +++ +
Sbjct: 54 LFGQVAQVVSIRVCRDQTRRQSLGYAYVNFSSHQDAVNAMEHLNFTPVNGKPIRIMIS-- 111
Query: 179 KKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAG 238
N P ++ +A N+FI NL K LR+ F + G V+S +V N + S G
Sbjct: 112 ---NRDPSIRKSGYA--NVFIKNLDLSIDNKALRDTFAAFGT-VLSCKVAVDSNGQ-SKG 164
Query: 239 YGFVSFKSKKVAETAISAFQGKVI 262
YGFV F+S++ AE +I G ++
Sbjct: 165 YGFVQFESEESAEISIEKLNGMLL 188
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/157 (20%), Positives = 72/157 (45%), Gaps = 6/157 (3%)
Query: 106 QNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYE 165
+N+ + ++ +R F GTVL ++++ S +++G FV S + A ++ L
Sbjct: 128 KNLDLSIDNKALRDTFAAFGTVLSCKVAVDSNGQSKGYGFVQFESEESAEISIEKLNGML 187
Query: 166 FEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSA 225
+ + V + ++ ++ N+++ NL DL+ F G +++
Sbjct: 188 LNDKQVYVGHFIRHQER----IRANGSQFTNVYVKNLPETTTDDDLKNLFAPHG--TITS 241
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
++ D+ +S +GFV+F++ A A+ G V+
Sbjct: 242 AIVMTDSNGKSKCFGFVNFQNTDSAAAAVEKLDGTVL 278
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 94 REEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDE 153
R E+ L +N+ E ++ LF ++GT+ ++ + ++G FV SPDE
Sbjct: 310 RFEKLQGANLYIKNLDDHIDDEKLKELFSEYGTITSCKVMLDQHGLSKGSGFVAFSSPDE 369
Query: 154 ATAALNNLESYEFEGR 169
AT ALN + + +GR
Sbjct: 370 ATKALNEMNG-KMKGR 384
>gi|380030450|ref|XP_003698861.1| PREDICTED: protein alan shepard-like [Apis florea]
Length = 551
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 81/171 (47%), Gaps = 19/171 (11%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSP 151
Q+ E+ SKT L + + +T +D+ + Q+GT+ + + + N+ +G FV SP
Sbjct: 214 QQAEQLSKTNLYIRGLNQNTTDKDLVNMCSQYGTITSTKAILDKNTNKCKGYGFVDFESP 273
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDL 211
A A+ L + + ++ AK ++++P NL+IANL + D+
Sbjct: 274 VAAEGAVKALVA-----KGIQAQMAKQQEQDPT-----------NLYIANLPLSFKENDV 317
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
E +++ V+S I D +S G GF +SK+ E I F GK +
Sbjct: 318 -EGLLAQYGQVISTR-ILRDTAGQSKGVGFARMESKEKCEQIIQMFNGKAL 366
>gi|341900388|gb|EGT56323.1| CBN-TIAR-1 protein [Caenorhabditis brenneri]
Length = 399
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 79/172 (45%), Gaps = 12/172 (6%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLE 162
L N+ T + + + LF Q G+V ++ N AFV +A+ AL +
Sbjct: 44 LYVGNLDPTVSEDFVATLFNQIGSVTKTKVIFDGAND--PYAFVEFSDHAQASQALQTMN 101
Query: 163 SYEFEGRTLKVNYAKIKKKNPFPPVQPKPFAT---FNLFIANLSFEARAKDLREFFISEG 219
R +KVN+A P QP T F++F+ +LS E + LRE F G
Sbjct: 102 KRLLLDREMKVNWA------VEPGQQPSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFG 155
Query: 220 WDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271
DV A+VI N +S GYGFVS+ ++ AE AI G+ + I ++
Sbjct: 156 -DVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNW 206
Score = 41.2 bits (95), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 73/173 (42%), Gaps = 26/173 (15%)
Query: 114 HEDIRALFEQHGTVLDIELSMHSKN-RNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
++ +R F+ G V D ++ + +++G FV+ +EA A+ + RT++
Sbjct: 144 NQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIR 203
Query: 173 VNYAKIKKKNPFPPVQPKPFATFNLF--------------IANLSFEARAKDLREFFISE 218
N+A K + PV + ++ IANLS E D+R+ F S
Sbjct: 204 TNWATRKPGDQEKPVHYNEKSYDEIYNQTSGDNTSVYVGNIANLSEE----DIRQAFASY 259
Query: 219 GWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271
G +S IF + GY FV F +K A AI + + ++ S+
Sbjct: 260 G--RISEVRIF-----KMQGYAFVKFDNKDAAAKAIVQMNNQEVGGQLVRCSW 305
>gi|18463972|gb|AAL73053.1| HUC [Sphoeroides nephelus]
Length = 356
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 74/163 (45%), Gaps = 11/163 (6%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T E+ ++LF G + +L ++ G FV P++A A
Sbjct: 34 SKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKA 93
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + + +T+KV+YA+ + NL+++ L KD+ + F
Sbjct: 94 INTLNGLKLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMSQKDMEQLFSQ 144
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 145 YG-RIITSRILVDQVTGISRGVGFIRFDKRNEAEEAIKGLNGQ 186
>gi|169853086|ref|XP_001833224.1| polyadenylate-binding protein [Coprinopsis cinerea okayama7#130]
gi|116505602|gb|EAU88497.1| polyadenylate-binding protein [Coprinopsis cinerea okayama7#130]
Length = 681
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 83/171 (48%), Gaps = 11/171 (6%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T L +N+ T ++ LF+++G V +S+ + +++G FV + DEA A++
Sbjct: 230 TNLYVKNLDPEVTQDEFIELFKKYGNVTSAVISVDEEGKSKGFGFVNFETHDEAQKAVDE 289
Query: 161 LESYEFEGRTLKVNYAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDL 211
L +E +G+ L V+ A+ K + + + + + + NL+I NL + L
Sbjct: 290 LNDFELKGKKLFVSRAQKKAEREEELRRSYEQAKLEKLSKYQGVNLYIKNLEDDVDDDKL 349
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
R F E + +++ + D +S G+GFV F S A A++ K+I
Sbjct: 350 RAEF--EPFGTITSCKVMRDEKGQSKGFGFVCFSSPDEATKAVAEMNNKMI 398
Score = 41.2 bits (95), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATA 156
+Y L +N+ + +RA FE GT+ ++ K +++G FV SPDEAT
Sbjct: 329 KYQGVNLYIKNLEDDVDDDKLRAEFEPFGTITSCKVMRDEKGQSKGFGFVCFSSPDEATK 388
Query: 157 ALNNLESYEFEGRTLKVNYAKIKK 180
A+ + + + L V+ A+ ++
Sbjct: 389 AVAEMNNKMIGTKPLYVSLAQRRE 412
Score = 40.4 bits (93), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 196 NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
N+FI NL K L + F + G V+S +V D RS GYGFV +++ + AE AI
Sbjct: 138 NIFIKNLDEAIDNKALHDTFAAFGT-VLSCKVA-TDETGRSKGYGFVHYETAEAAENAIK 195
Query: 256 AFQGKVI 262
A G ++
Sbjct: 196 AVNGMLL 202
>gi|40807107|gb|AAH65343.1| Elavl3 protein [Danio rerio]
Length = 359
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 72/163 (44%), Gaps = 10/163 (6%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T E+ ++LF G + +L ++ G FV P++A A
Sbjct: 36 SKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKA 95
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + + +T+KV+YA+ + NL+++ L KD+ + F
Sbjct: 96 INTLNGLKLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMSQKDMEQLFSQ 146
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
G + S ++ S G GF+ F + AE AI G+
Sbjct: 147 YGRIITSRILVDQVTAGISRGVGFIRFDKRNEAEEAIKGLNGQ 189
>gi|213623456|gb|AAI69769.1| ElrC protein [Xenopus laevis]
Length = 341
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 80/175 (45%), Gaps = 11/175 (6%)
Query: 87 AAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAF 145
+N E + SKT L+ +P T E+ ++LF G + +L ++ G F
Sbjct: 20 GILNGTNGEADDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGF 79
Query: 146 VTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFE 205
V P++A A+N L + + +T+KV+YA+ + NL++++L
Sbjct: 80 VNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSSAS---------IRDANLYVSSLPKT 130
Query: 206 ARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
K++ + F S+ ++++ ++ S G GF+ F + AE AI G+
Sbjct: 131 MNQKEMEQLF-SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 184
>gi|345493906|ref|XP_003427178.1| PREDICTED: protein alan shepard-like isoform 2 [Nasonia
vitripennis]
Length = 579
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 79/171 (46%), Gaps = 8/171 (4%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSP 151
Q+ E+ SKT L + + +T +D+ + Q+GT+ + + + N+ +G FV SP
Sbjct: 232 QQSEQLSKTNLYIRGLNQNTTDKDLVNMCSQYGTITSTKAILDKNTNKCKGYGFVDFESP 291
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDL 211
A A+ L + + + KV I++ P NL+IANL + D+
Sbjct: 292 VAAEGAVKALVAKGIQAQMAKVGIWLIRRLASQQEQDPT-----NLYIANLPLSFKENDV 346
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
E +++ V+S I D +S G GF +SK+ E I F GK +
Sbjct: 347 -EGLLAQYGQVISTR-ILRDTSGQSKGVGFARMESKEKCEQIIQMFNGKAL 395
>gi|376297960|ref|YP_005169190.1| RNP-1 like RNA-binding protein [Desulfovibrio desulfuricans ND132]
gi|323460522|gb|EGB16387.1| RNP-1 like RNA-binding protein [Desulfovibrio desulfuricans ND132]
Length = 87
Score = 62.4 bits (150), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/78 (41%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIEL-SMHSKNRNRGLAFVTMGSPDEATAALNNLESYE 165
N+PW++T ED+RA FE G V+ ++L + R RG FV M A AA+ +L+ +
Sbjct: 9 NLPWSATEEDVRAAFETFGEVISVKLVNDRETGRPRGFGFVEMDD-QGALAAIESLDGSD 67
Query: 166 FEGRTLKVNYAKIKKKNP 183
F GR LKVN A+ + + P
Sbjct: 68 FGGRNLKVNEARPRPERP 85
>gi|317106693|dbj|BAJ53194.1| JHL03K20.3 [Jatropha curcas]
Length = 642
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 92/193 (47%), Gaps = 16/193 (8%)
Query: 92 EQREEEYSKTR---LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTM 148
++RE KT+ + +N+ T+T ED++ +F ++G + + ++R FV
Sbjct: 196 QERESGTDKTKFNNVYVKNLSETTTEEDLKKIFGEYGAITSAVVMRDGDGKSRCFGFVNF 255
Query: 149 GSPDEATAALNNLESYEFE------GRTLKVNYAKIKKKNPFPPVQPK---PFATFNLFI 199
+PD+A ++ L F+ G+ K + +++ K F + F NL++
Sbjct: 256 ENPDDAARSVEALNGKTFDEKEWYVGKAQKKSEREVELKGQFEQTLKETVDKFEGLNLYV 315
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
NL L+E F SE + S +V+ N S G GFV++ + + A A++ G
Sbjct: 316 KNLDDSITDDKLKELF-SEFGTITSCKVMRDPN-GVSKGSGFVAYSTAEEASKALTEMNG 373
Query: 260 KVIMC--LVIALS 270
K+I+ L +AL+
Sbjct: 374 KMIVSKPLYVALA 386
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 76/171 (44%), Gaps = 18/171 (10%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEAT 155
++ T L ++ T + LF Q G ++ I + + R+ G +V + +A
Sbjct: 25 QFVSTSLYVGDLEQNVTETQLYDLFNQLGQIVSIRVCRDLTSRRSLGYGYVNYNNVHDAA 84
Query: 156 AALNNLESYEFEGRTLKVNYA----KIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDL 211
AL L G+ +++ Y+ I+K N++I NL K L
Sbjct: 85 QALEVLNFTPVNGKPIRIMYSYRDPTIRKS-----------GAGNIYIKNLDKAIDNKAL 133
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
+ F + G +++S +V D+ +S GYGFV F +++ A+ AI G ++
Sbjct: 134 HDTFSAFG-NILSCKVA-TDSAGQSLGYGFVQFDNEESAKNAIDKLNGMLL 182
>gi|449446375|ref|XP_004140947.1| PREDICTED: polyadenylate-binding protein 3-like [Cucumis sativus]
Length = 652
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 82/176 (46%), Gaps = 22/176 (12%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N+P T+T +D++ LF HGT+ + S +++ FV + D A AA+
Sbjct: 213 TNVYVKNLPETTTDDDLKNLFAPHGTITSAIVMTDSNGKSKCFGFVNFQNTDSAAAAVEK 272
Query: 161 LESYEF-EGRTLKVNYAKIK--------------KKNPFPPVQPKPFATFNLFIANLSFE 205
L+ + +TL V A+ K +K+ F +Q NL+I NL
Sbjct: 273 LDGTVLGDDKTLYVGRAQRKAEREAELKAKFEQERKSRFEKLQ-----GANLYIKNLDDH 327
Query: 206 ARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKV 261
+ L+E F SE + S +V+ D S G GFV+F S A A++ GK+
Sbjct: 328 IDDEKLKELF-SEYGTITSCKVML-DQHGLSKGSGFVAFSSPDEATKALNEMNGKM 381
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 72/144 (50%), Gaps = 10/144 (6%)
Query: 120 LFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178
LF Q V+ I + ++ ++ G A+V S +A A+ +L G+ +++ +
Sbjct: 54 LFGQVAQVVSIRVCRDQTRRQSLGYAYVNFSSHQDAVNAMEHLNFTPVNGKPIRIMIS-- 111
Query: 179 KKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAG 238
N P ++ +A N+FI NL K LR+ F + G V+S +V N +S G
Sbjct: 112 ---NRDPSIRKSGYA--NVFIKNLDLSIDNKALRDTFAAFGT-VLSCKVAVDSN-GQSKG 164
Query: 239 YGFVSFKSKKVAETAISAFQGKVI 262
YGFV F+S++ AE +I G ++
Sbjct: 165 YGFVQFESEESAEISIEKLNGMLL 188
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/157 (20%), Positives = 72/157 (45%), Gaps = 6/157 (3%)
Query: 106 QNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYE 165
+N+ + ++ +R F GTVL ++++ S +++G FV S + A ++ L
Sbjct: 128 KNLDLSIDNKALRDTFAAFGTVLSCKVAVDSNGQSKGYGFVQFESEESAEISIEKLNGML 187
Query: 166 FEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSA 225
+ + V + ++ ++ N+++ NL DL+ F G +++
Sbjct: 188 LNDKQVYVGHFIRHQER----IRANGSQFTNVYVKNLPETTTDDDLKNLFAPHG--TITS 241
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
++ D+ +S +GFV+F++ A A+ G V+
Sbjct: 242 AIVMTDSNGKSKCFGFVNFQNTDSAAAAVEKLDGTVL 278
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 94 REEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDE 153
R E+ L +N+ E ++ LF ++GT+ ++ + ++G FV SPDE
Sbjct: 310 RFEKLQGANLYIKNLDDHIDDEKLKELFSEYGTITSCKVMLDQHGLSKGSGFVAFSSPDE 369
Query: 154 ATAALNNLESYEFEGR 169
AT ALN + + +GR
Sbjct: 370 ATKALNEMNG-KMKGR 384
>gi|383865034|ref|XP_003707981.1| PREDICTED: ELAV-like protein 2-like [Megachile rotundata]
Length = 502
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 84/203 (41%), Gaps = 28/203 (13%)
Query: 74 ATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELS 133
A D V + + + +EE SKT L+ +P + T ++IR+LF G V +L
Sbjct: 3 ANGMDTVVQQNGGSTLGQASQEE--SKTNLIVNYLPQSMTQDEIRSLFSSIGEVESCKLI 60
Query: 134 MHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPF 192
++ G FV ++A A+N L + +T+KV+YA+ P +
Sbjct: 61 RDKLTGQSLGYGFVNYHRSEDAEKAINTLNGLRLQNKTIKVSYAR-------PSSEAIKG 113
Query: 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDN--------------PRRSAG 238
A NL+++ L +DL F G + S I DN P S G
Sbjct: 114 A--NLYVSGLPKNMTQQDLENLFSPYGRIITSR--ILCDNITVRQFVTGGGDYLPGLSKG 169
Query: 239 YGFVSFKSKKVAETAISAFQGKV 261
GF+ F + AE AI G +
Sbjct: 170 VGFIRFDQRVEAERAIQELNGTI 192
>gi|224058156|ref|XP_002196701.1| PREDICTED: ELAV-like protein 4 [Taeniopygia guttata]
Length = 371
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 81/189 (42%), Gaps = 11/189 (5%)
Query: 73 SATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIEL 132
S TT P +S + + + SKT L+ +P T E+ R+LF G + +L
Sbjct: 23 SNTTNGPSSNSRNCPSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKL 82
Query: 133 SMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKP 191
++ G FV P +A A+N L + +T+KV+YA+ +
Sbjct: 83 VRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS--------- 133
Query: 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAE 251
NL+++ L K+L + F G ++++ ++ S G GF+ F + AE
Sbjct: 134 IRDANLYVSGLPKTMTQKELEQLFSQYG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAE 192
Query: 252 TAISAFQGK 260
AI G+
Sbjct: 193 EAIKGLNGQ 201
>gi|432868074|ref|XP_004071398.1| PREDICTED: ELAV-like protein 3-like isoform 2 [Oryzias latipes]
Length = 359
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 74/163 (45%), Gaps = 11/163 (6%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T E+ ++LF G + +L ++ G FV P++A A
Sbjct: 36 SKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKA 95
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + + +T+KV+YA+ + NL+++ L KD+ + F
Sbjct: 96 INTLNGLKLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMSQKDMEQLFSQ 146
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 147 YG-RIITSRILVDQVTGISRGVGFIRFDKRNEAEEAIKGLNGQ 188
>gi|42407940|dbj|BAD09079.1| nucleic acid-binding protein-like [Oryza sativa Japonica Group]
Length = 131
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 60/114 (52%), Gaps = 4/114 (3%)
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA-TFNLFIANLSFEA 206
M + +EA A+ L Y+ GR L VN A + P P+ FA F ++ NL ++
Sbjct: 1 MSTIEEADKAIEMLNRYDINGRLLNVNRAAPRGSRVERP--PRQFAPAFRAYVGNLPWQV 58
Query: 207 RAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
L + F SE +VV+A V++ RS G+GFVS SK+ + AISA G+
Sbjct: 59 DDSRLLQLF-SEHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQ 111
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
R N+PW + LF +HG V++ + + R+RG FV+M S +E A++
Sbjct: 48 RAYVGNLPWQVDDSRLLQLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAISA 107
Query: 161 LESYEFEGRTLKVNYAKIKKKNPF 184
L+ E +GR L+VN A + + F
Sbjct: 108 LDGQELDGRPLRVNVAAERPQRGF 131
>gi|134083249|emb|CAK46820.1| unnamed protein product [Aspergillus niger]
Length = 367
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 87/188 (46%), Gaps = 28/188 (14%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATA 156
E S TRL N+P T +DI F HG+ E+ + + G F+ ++A
Sbjct: 3 EVSSTRLYLGNLPRNVTKQDIEEHFSTHGSGKITEIKLMN-----GFGFIEY---EDAMD 54
Query: 157 ALNNL-ESYEFEGRTLKVNYAK-IKKKNPFP-----PVQPKPFAT-FNLFIANLSFEARA 208
A + + + +F+G L V +A+ ++K FP P P+P T F + ++ L E
Sbjct: 55 ARDVVPDGSDFKGERLTVQFARGPRRKENFPGPMDRPNMPRPRRTIFRMMVSGLP-ETSW 113
Query: 209 KDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA-----FQGKVIM 263
+DL++F G DVV +E R G GFV F++ +TAI F+G +
Sbjct: 114 QDLKDFARQSGLDVVYSETG------RELGRGFVEFETANDLKTAIEKLDGREFKGSRVT 167
Query: 264 CLVIALSY 271
C+ +Y
Sbjct: 168 CIADIQTY 175
>gi|345887600|ref|ZP_08838771.1| hypothetical protein HMPREF0178_01545 [Bilophila sp. 4_1_30]
gi|345041635|gb|EGW45774.1| hypothetical protein HMPREF0178_01545 [Bilophila sp. 4_1_30]
Length = 106
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIEL-SMHSKNRNRGLAFVTMGSPDEATAALNNL 161
L N+PW++T +D+R LF +G V ++L S R RG FV M S + AA+ L
Sbjct: 21 LYVGNLPWSATEDDVRDLFAPYGEVTSVKLVSDRETGRARGFGFVEMAS-EGVQAAVEAL 79
Query: 162 ESYEFEGRTLKVNYAKIKKKNP 183
+++ F GR LKVN A+ ++ P
Sbjct: 80 DNFSFSGRNLKVNEARPREARP 101
>gi|398394106|ref|XP_003850512.1| hypothetical protein MYCGRDRAFT_46623 [Zymoseptoria tritici IPO323]
gi|339470390|gb|EGP85488.1| hypothetical protein MYCGRDRAFT_46623 [Zymoseptoria tritici IPO323]
Length = 343
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 78/179 (43%), Gaps = 3/179 (1%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRN-RGLAFVTMGSPDEA 154
E+ ++ L N+ T + L Q G V+++ L +N +G FV GS D+A
Sbjct: 8 EQDKESTLYVGNLDERCTDALVWELMLQAGPVINVHLPRDRVTQNHQGYGFVEFGSEDDA 67
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
A + G+ ++VN A K+ LF+ NL K L E
Sbjct: 68 DYACKIMNQIRVHGKPIRVNKASADKRAGGENGGLG-GVGAELFVGNLDSLVDEKVLYET 126
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSYLY 273
FI G +V+A I D+ S GYGFVS+ + ++ AI G+ +M + + Y Y
Sbjct: 127 FIRFG-QLVAAPKIARDDANLSKGYGFVSYAGFEASDAAIEHMHGQYLMNKEVTVQYAY 184
>gi|410902665|ref|XP_003964814.1| PREDICTED: ELAV-like protein 3-like isoform 2 [Takifugu rubripes]
Length = 358
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 74/163 (45%), Gaps = 11/163 (6%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T E+ ++LF G + +L ++ G FV P++A A
Sbjct: 36 SKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKA 95
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + + +T+KV+YA+ + NL+++ L KD+ + F
Sbjct: 96 INTLNGLKLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMSQKDMEQLFSQ 146
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 147 YG-RIITSRILVDQVTGISRGVGFIRFDKRNEAEEAIKGLNGQ 188
>gi|390458027|ref|XP_003732041.1| PREDICTED: ELAV-like protein 2 [Callithrix jacchus]
gi|402897271|ref|XP_003911692.1| PREDICTED: ELAV-like protein 2 isoform 6 [Papio anubis]
gi|426361471|ref|XP_004047934.1| PREDICTED: ELAV-like protein 2 isoform 6 [Gorilla gorilla gorilla]
Length = 390
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 86/182 (47%), Gaps = 14/182 (7%)
Query: 81 VDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH--SKN 138
++++ ++ V++ E+ SKT L+ +P T E++++LF G + +L ++
Sbjct: 50 INNNCSSPVDSGNTED--SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEG 107
Query: 139 RNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLF 198
++ G FV P +A A+N L + +T+KV+YA+ + NL+
Sbjct: 108 QSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLY 158
Query: 199 IANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ 258
++ L K+L + F G ++++ ++ S G GF+ F + AE AI
Sbjct: 159 VSGLPKTMTQKELEQLFSQYG-RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLN 217
Query: 259 GK 260
G+
Sbjct: 218 GQ 219
>gi|357628251|gb|EHJ77641.1| poly A binding protein [Danaus plexippus]
Length = 601
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 91/196 (46%), Gaps = 20/196 (10%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHED-----IRALFEQHGTVLDIELSMHSKNRNRGLAFV 146
++RE+E + + NV + ED +R +FE++G + ++ +RG FV
Sbjct: 169 KEREKELGEKAKLFTNVYVKNFGEDFSDEMLRDMFEKYGRITSHKVMYKEDGSSRGFGFV 228
Query: 147 TMGSPDEATAALNNLESYEF-EGRTLKVNYAKIKK------KNPFPPVQPKPFATF---N 196
PD A A L E EG+ L V A+ K K F ++ + + N
Sbjct: 229 AFEDPDAAERACLELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVN 288
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
L++ NL + LR+ F G + SA+V+ D RS G+GFV F S + A A++
Sbjct: 289 LYVKNLDDTIDDERLRKEFAPFGT-ITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTE 345
Query: 257 FQGKVIMC--LVIALS 270
G+++ L +AL+
Sbjct: 346 MNGRIVGTKPLYVALA 361
Score = 44.3 bits (103), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 75/155 (48%), Gaps = 15/155 (9%)
Query: 114 HEDIR--ALFEQ---HGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFE 167
H DI LFE+ G VL I + R+ G A+V P +A AL+ + +
Sbjct: 10 HSDITEAMLFEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPSDAERALDTMNFDMIK 69
Query: 168 GRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEV 227
GR +++ ++ +++P + N+FI NL K + + F + G +++S +V
Sbjct: 70 GRPIRIMWS---QRDP----SLRKSGVGNVFIKNLDKAIDNKAMYDTFSAFG-NILSCKV 121
Query: 228 IFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
+N S GYGFV F++++ A +I G ++
Sbjct: 122 AQDENG-ASKGYGFVHFETEEAANKSIEKVNGMLL 155
Score = 37.4 bits (85), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 29/143 (20%), Positives = 61/143 (42%), Gaps = 3/143 (2%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L +++ ++G FV + + A ++ + G+ + V I +
Sbjct: 110 FSAFGNILSCKVAQDENGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRF-IPR 168
Query: 181 KNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYG 240
K + K N+++ N + + LR+ F E + +++ + + S G+G
Sbjct: 169 KEREKELGEKAKLFTNVYVKNFGEDFSDEMLRDMF--EKYGRITSHKVMYKEDGSSRGFG 226
Query: 241 FVSFKSKKVAETAISAFQGKVIM 263
FV+F+ AE A GK ++
Sbjct: 227 FVAFEDPDAAERACLELNGKELV 249
>gi|218885302|ref|YP_002434623.1| RNP-1 like RNA-binding protein [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|347730840|ref|ZP_08863950.1| RNA recognition motif family protein [Desulfovibrio sp. A2]
gi|218756256|gb|ACL07155.1| RNP-1 like RNA-binding protein [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|347520346|gb|EGY27481.1| RNA recognition motif family protein [Desulfovibrio sp. A2]
Length = 88
Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats.
Identities = 36/90 (40%), Positives = 52/90 (57%), Gaps = 7/90 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKN-RNRGLAFVTMGSPDEATAALNN 160
+L N+P++S+ D+RALF HG V + L M + R RG FV M D A AA+
Sbjct: 4 KLYVGNLPFSSSESDLRALFSNHGEVQSVALIMDRETGRPRGFGFVEMDD-DGARAAMEA 62
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPVQPK 190
L+ +F+GR+LKVN A+ + P QP+
Sbjct: 63 LDGRDFQGRSLKVNEAQERA-----PRQPR 87
>gi|223940412|ref|ZP_03632265.1| RNP-1 like RNA-binding protein [bacterium Ellin514]
gi|223890907|gb|EEF57415.1| RNP-1 like RNA-binding protein [bacterium Ellin514]
Length = 118
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAALN 159
T+L N+P+++T D++ F GTV+ + + + R+RG AF+ MGS EA AA+
Sbjct: 3 TKLFVGNLPFSTTENDLQDHFSGAGTVIAVNIMQDRATGRSRGFAFIEMGSQAEADAAVA 62
Query: 160 NLESYEFEGRTLKVNYAKIKKKNP 183
EF+GR L VN A+ +++ P
Sbjct: 63 QYHGKEFQGRALTVNEARPREERP 86
Score = 38.1 bits (87), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
LF+ NL F DL++ F G V++ ++ RS G+ F+ S+ A+ A++
Sbjct: 5 LFVGNLPFSTTENDLQDHFSGAGT-VIAVNIMQDRATGRSRGFAFIEMGSQAEADAAVAQ 63
Query: 257 FQGK 260
+ GK
Sbjct: 64 YHGK 67
>gi|345493910|ref|XP_003427180.1| PREDICTED: protein alan shepard-like isoform 4 [Nasonia
vitripennis]
Length = 575
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 79/171 (46%), Gaps = 8/171 (4%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSP 151
Q+ E+ SKT L + + +T +D+ + Q+GT+ + + + N+ +G FV SP
Sbjct: 232 QQSEQLSKTNLYIRGLNQNTTDKDLVNMCSQYGTITSTKAILDKNTNKCKGYGFVDFESP 291
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDL 211
A A+ L + + + KV I++ P NL+IANL + D+
Sbjct: 292 VAAEGAVKALVAKGIQAQMAKVGIWLIRRLASQQEQDPT-----NLYIANLPLSFKENDV 346
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
E +++ V+S I D +S G GF +SK+ E I F GK +
Sbjct: 347 -EGLLAQYGQVISTR-ILRDTSGQSKGVGFARMESKEKCEQIIQMFNGKAL 395
>gi|222639809|gb|EEE67941.1| hypothetical protein OsJ_25829 [Oryza sativa Japonica Group]
Length = 164
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 72/136 (52%), Gaps = 13/136 (9%)
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI---KKKN----PFPPVQPKPF 192
+RG FVTM S EA A+N L+ ++ +GR + V + K++N PPV+ F
Sbjct: 19 SRGCGFVTMRSLPEARTAMNALDGFDLDGREMLVKLSSDVVSKRRNINMTHTPPVKDHIF 78
Query: 193 AT-FNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAE 251
+ +++ N+++ ++LRE+F S+ VVS ++ R YGF+SF S + E
Sbjct: 79 ESPHKIYVGNIAWSVEPQELREYF-SQCGTVVSTRLLTDRKGGRGRVYGFLSFASAEELE 137
Query: 252 TAI----SAFQGKVIM 263
A+ + F G+ I+
Sbjct: 138 AALKLDNTHFHGRNIL 153
Score = 38.5 bits (88), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
++ N+ W+ +++R F Q GTV+ L K R R F++ S +E AAL
Sbjct: 83 KIYVGNIAWSVEPQELREYFSQCGTVVSTRLLTDRKGGRGRVYGFLSFASAEELEAAL-K 141
Query: 161 LESYEFEGRTLKVNYAKIKKK 181
L++ F GR + V A +++
Sbjct: 142 LDNTHFHGRNILVRQAHEERQ 162
>gi|32482055|gb|AAP84374.1| FCA-A1 [Triticum aestivum]
Length = 602
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 72/151 (47%), Gaps = 13/151 (8%)
Query: 117 IRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE---ATAALNNLESYEFEGRTLK 172
+R LFE HG VL++ L K +G FV + +E A AL+N + ++
Sbjct: 1 VRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRALHNQCTIPGAMGPVQ 60
Query: 173 VNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDN 232
V YA +K+ LF+A+L+ +A AK++ E F G V I D
Sbjct: 61 VRYADGEKER-------HGSIEHKLFVASLNKQATAKEIEEIFAPFGH--VEDVYIMKDG 111
Query: 233 PRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
R+S G GFV F SK+ A A+++ G IM
Sbjct: 112 MRQSRGCGFVKFSSKEPALAAMNSLSGTYIM 142
>gi|302683360|ref|XP_003031361.1| hypothetical protein SCHCODRAFT_257452 [Schizophyllum commune H4-8]
gi|300105053|gb|EFI96458.1| hypothetical protein SCHCODRAFT_257452 [Schizophyllum commune H4-8]
Length = 624
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 78/171 (45%), Gaps = 11/171 (6%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T L +N+ T E+ LF+Q+G V L + RN G FV + +EA A++
Sbjct: 223 TNLYVKNIDPEVTDEEFENLFKQYGQVQSSLLKRDDQGRNLGFGFVNFETHEEAQKAVDA 282
Query: 161 LESYEFEGRTLKVNYAKIK-------KKNPFPPVQPK--PFATFNLFIANLSFEARAKDL 211
L +F GR L V A+ K +K Q + + NL+I NL + + L
Sbjct: 283 LHESDFHGRKLYVARAQKKAEREAELRKQYDQARQERMNKYQGVNLYIKNLEDDVDDEKL 342
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
R F E + +++ + D +S G+GFV + + A A++ K+I
Sbjct: 343 RAEF--EPFGTITSCRVMRDERGKSKGFGFVCYSAPDEATKAVAEMNNKMI 391
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 44/89 (49%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R +Y L +N+ E +RA FE GT+ + + +++G FV +P
Sbjct: 317 QERMNKYQGVNLYIKNLEDDVDDEKLRAEFEPFGTITSCRVMRDERGKSKGFGFVCYSAP 376
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKK 180
DEAT A+ + + + L V+ A+ K+
Sbjct: 377 DEATKAVAEMNNKMIGSKPLYVSLAQRKE 405
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 67/144 (46%), Gaps = 10/144 (6%)
Query: 120 LFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178
+F G V I + + R+ G A+V + + AL L + R ++ +++
Sbjct: 61 IFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQLNYSSIKNRPCRIMWSQ- 119
Query: 179 KKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAG 238
++P + N+FI NL + K L + F + G +V+S +V D S G
Sbjct: 120 --RDPAL----RKTGQGNIFIKNLDEQIDNKALHDTFAAFG-NVLSCKVAT-DEHGNSKG 171
Query: 239 YGFVSFKSKKVAETAISAFQGKVI 262
YGFV +++ + AE AI + G ++
Sbjct: 172 YGFVHYETAEAAENAIKSVNGMLL 195
>gi|45382273|ref|NP_990161.1| ELAV-like protein 4 [Gallus gallus]
gi|5739519|gb|AAD50508.1|AF176675_1 RNA-binding protein HuD [Gallus gallus]
Length = 371
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 81/189 (42%), Gaps = 11/189 (5%)
Query: 73 SATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIEL 132
S TT P +S + + + SKT L+ +P T E+ R+LF G + +L
Sbjct: 23 SNTTNGPSSNSRNCPSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKL 82
Query: 133 SMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKP 191
++ G FV P +A A+N L + +T+KV+YA+ +
Sbjct: 83 VRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS--------- 133
Query: 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAE 251
NL+++ L K+L + F G ++++ ++ S G GF+ F + AE
Sbjct: 134 IRDANLYVSGLPKTMTQKELEQLFSQYG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAE 192
Query: 252 TAISAFQGK 260
AI G+
Sbjct: 193 EAIKGLNGQ 201
>gi|348502707|ref|XP_003438909.1| PREDICTED: embryonic polyadenylate-binding protein-like
[Oreochromis niloticus]
Length = 623
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 91/195 (46%), Gaps = 19/195 (9%)
Query: 92 EQREEEYSK-----TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFV 146
++RE E+ T + +N T E ++ +F G L + + K R+RG FV
Sbjct: 177 KEREVEFGSKAMKFTNVYIKNFGEDFTDEKLKEVFSAFGRTLSVRVMKDEKGRSRGFGFV 236
Query: 147 TMGSPDEATAALNNLESYEFEGRTLKVNYAK--------IKKK-NPFPPVQPKPFATFNL 197
++A A+N + E G+ L V A+ +K+K + + + + NL
Sbjct: 237 NYAHHEDAQKAVNEMNGKEINGKILYVGRAQKRLERQGELKRKFDQIKQDRIQRYQGVNL 296
Query: 198 FIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAF 257
++ NL + LR+ F G + SA+V+ + +S G+GFV F S + A A++
Sbjct: 297 YVKNLDDSIDDERLRKEFAPYGT-ITSAKVMTDGS--QSKGFGFVCFSSPEEATKAVTEM 353
Query: 258 QGKVIMC--LVIALS 270
G+++ L +AL+
Sbjct: 354 NGRIVATKPLYVALA 368
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 64/124 (51%), Gaps = 10/124 (8%)
Query: 139 RNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLF 198
R+ G A+V P +A AL+ + +GR +++ +++ ++P + N+F
Sbjct: 50 RSLGYAYVNFQQPADAECALDTMNYDVIKGRPIRIMWSQ---RDP----GLRKSGVGNIF 102
Query: 199 IANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ 258
I N+ K L + F + G +++S +V+ + + S GYGFV F++++ A AI
Sbjct: 103 IKNMDESIDNKALYDTFSAFG-NILSCKVVCDE--KGSKGYGFVHFETQEAANRAIETMN 159
Query: 259 GKVI 262
G ++
Sbjct: 160 GMLL 163
>gi|332030568|gb|EGI70256.1| Polyadenylate-binding protein 1 [Acromyrmex echinatior]
Length = 678
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 88/186 (47%), Gaps = 18/186 (9%)
Query: 92 EQREEEYSK-----TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFV 146
++RE+E + T + +N T + ++ +FE++GT+ ++ ++RG FV
Sbjct: 221 KEREKELGEKAKLFTNVYVKNFGEDMTEDKLKDMFEKYGTITSHKVMSKDDGKSRGFGFV 280
Query: 147 TMGSPDEATAALNNLESYEF-EGRTLKVNYAKIKK------KNPFPPVQPKPFATF---N 196
PD A A+ L E EG+ + V A+ K K F ++ + + N
Sbjct: 281 AFEDPDAAEQAVLELNGKEIAEGKCMYVGRAQKKAERQQELKRKFEQLKIERLNRYQGVN 340
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
L++ NL + LR+ F G + SA+V+ + RS G+GFV F + A A++
Sbjct: 341 LYVKNLDDTIDDERLRKEFTPFGT-ITSAKVMMEEG--RSKGFGFVCFSQPEEATKAVTE 397
Query: 257 FQGKVI 262
G+++
Sbjct: 398 MNGRIV 403
>gi|308490851|ref|XP_003107617.1| CRE-MSI-1 protein [Caenorhabditis remanei]
gi|308250486|gb|EFO94438.1| CRE-MSI-1 protein [Caenorhabditis remanei]
Length = 335
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 86/194 (44%), Gaps = 19/194 (9%)
Query: 81 VDSSSAAAVNTEQREEEYSK---TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH-S 136
VD A +N + + + ++ + W +T E++R F + G V + + +
Sbjct: 18 VDGHEEARLNADSDDGSHGSQDPGKMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPA 77
Query: 137 KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPP-VQPKPFA-T 194
R RG F+T P LN E +E +G+ KI K FP Q K T
Sbjct: 78 TKRARGFGFITFVDPSSVDKVLNARE-HELDGK-------KIDPKVAFPKRTQAKLVTKT 129
Query: 195 FNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKS----KKVA 250
+FI LS + +DL+++F + G V A +++ +R G+GFV+F S KV
Sbjct: 130 KKVFIGGLSATSTLEDLKQYFETYG-KVEDAMLMYDKATQRHRGFGFVTFDSDEVADKVC 188
Query: 251 ETAISAFQGKVIMC 264
E GK++ C
Sbjct: 189 EIHFHEINGKMVEC 202
Score = 43.9 bits (102), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 73/164 (44%), Gaps = 26/164 (15%)
Query: 111 TSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAALNNLESYEFEG 168
TST ED++ FE +G V D L M+ K R+RG FVT S DE + + +E G
Sbjct: 140 TSTLEDLKQYFETYGKVEDAML-MYDKATQRHRGFGFVTFDS-DEVADKVCEIHFHEING 197
Query: 169 RTLKVNYAKIKKKNPFPPVQ---PKPFATFNLF-IANLSFEARAKDLREFFISEGWDVVS 224
+ ++ K + K PVQ + A NL+ + + A A+ L F
Sbjct: 198 KMVECK--KAQPKEVMLPVQLNKSRAAAARNLYGMPPETLLAYAQYLPRF---------G 246
Query: 225 AEVIFHDNPRRSAGYGFVSFKS----KKVAETAISAFQGKVIMC 264
+++ P G+GFV+F S KV E GK++ C
Sbjct: 247 GNLMY---PGFGNGFGFVTFDSDEVADKVCEIHFHEINGKMVEC 287
>gi|46592818|ref|NP_997568.1| ELAV-like protein 2 isoform 1 [Mus musculus]
gi|29294744|gb|AAH49125.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B) [Mus musculus]
gi|34849537|gb|AAH58393.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B) [Mus musculus]
Length = 373
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 85/181 (46%), Gaps = 13/181 (7%)
Query: 81 VDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNR 139
V+++ ++ V++ E+ SKT L+ +P T E++++LF G + +L +
Sbjct: 35 VNNNCSSPVDSGNTED--SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQ 92
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI 199
+ G FV P +A A+N L + +T+KV+YA+ + NL++
Sbjct: 93 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYV 143
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ L K+L + F S+ ++++ ++ S G GF+ F + AE AI G
Sbjct: 144 SGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 202
Query: 260 K 260
+
Sbjct: 203 Q 203
>gi|406602185|emb|CCH46236.1| Polyadenylate-binding protein, cytoplasmic and nuclear
[Wickerhamomyces ciferrii]
Length = 652
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 86/181 (47%), Gaps = 13/181 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N+ ++ E+++ LF GTV L ++ ++RG AFV + A ++ +
Sbjct: 241 TNVYVKNIDLEASEEEVKELFTPFGTVTSFYLEKDAEGKSRGFAFVNYEEHEAAVKSIES 300
Query: 161 LESYEFEGRTLKVNYAKIKK------KNPFPPVQPKPFA---TFNLFIANLSFEARAKDL 211
L +++G+ L V A+ K K + + + NLF+ NL + L
Sbjct: 301 LNDQDYKGKKLYVGRAQKKSERLEELKKQYEAARIEKLTKSQGVNLFVKNLDDSIDDEKL 360
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIAL 269
+E F S G +S+ + D +S G+GFVSF S + A AIS ++ L +AL
Sbjct: 361 KEEFQSFG--TISSVKVMIDESGKSKGFGFVSFSSPEEASRAISEMNQHMLAGKPLYVAL 418
Query: 270 S 270
+
Sbjct: 419 A 419
Score = 40.4 bits (93), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 94 REEEYSKTR---LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGS 150
R E+ +K++ L +N+ + E ++ F+ GT+ +++ + +++G FV+ S
Sbjct: 334 RIEKLTKSQGVNLFVKNLDDSIDDEKLKEEFQSFGTISSVKVMIDESGKSKGFGFVSFSS 393
Query: 151 PDEATAALNNLESYEFEGRTLKVNYAKIK 179
P+EA+ A++ + + G+ L V A+ K
Sbjct: 394 PEEASRAISEMNQHMLAGKPLYVALAQRK 422
>gi|294659673|ref|XP_002770625.1| DEHA2G12474p [Debaryomyces hansenii CBS767]
gi|218511736|sp|Q6BI95.2|PABP_DEBHA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|199434145|emb|CAR65959.1| DEHA2G12474p [Debaryomyces hansenii CBS767]
Length = 627
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 87/181 (48%), Gaps = 13/181 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + A+N+ + E+ + LFE +G + I L + +++G FV + + A A++
Sbjct: 232 TNVYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKDHEGKSKGFGFVNFENHESAVKAVDE 291
Query: 161 LESYEFEGRTLKVNYAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDL 211
L E G+ + V A+ K+ K + + + + + NLFI NL ++ L
Sbjct: 292 LNDKEINGQKIYVGRAQKKRERLEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEKL 351
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIAL 269
E F G + SA V+ D +S G+GFV F S + A AI+ ++I L +AL
Sbjct: 352 EEEFKPFG-SITSARVMV-DETGKSKGFGFVCFSSPEEATKAITEMNQRMIYGKPLYVAL 409
Query: 270 S 270
+
Sbjct: 410 A 410
>gi|148236291|ref|NP_001081613.1| ELAV (embryonic lethal, abnormal vision)-like 2 (Hu antigen B)
[Xenopus laevis]
gi|728726|emb|CAA59430.1| Xel-1 [Xenopus laevis]
Length = 389
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 77/171 (45%), Gaps = 12/171 (7%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH--SKNRNRGLAFVTMG 149
E E SKT L+ +P T E++++LF G + +L ++ ++ G FV
Sbjct: 57 ESNNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYI 116
Query: 150 SPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAK 209
P +A A+N + + +T+KV+YA+ + NL+++ L K
Sbjct: 117 DPKDAEKAINTVNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQK 167
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
+L + F G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 168 ELEQLFSQYG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 217
>gi|348517413|ref|XP_003446228.1| PREDICTED: polyadenylate-binding protein 4 [Oreochromis niloticus]
Length = 627
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 84/167 (50%), Gaps = 14/167 (8%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ +F+++G L +++ ++RG FV+ ++A A+ + E G+T+ V
Sbjct: 205 ERLKEIFDKYGKTLSVKVMTDPSGKSRGFGFVSYEKHEDANKAVEEMNGTELNGKTVFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKMERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIALS 270
+V+ + RS G+GFV F S + A A++ G+++ L +AL+
Sbjct: 324 KVMLEEG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
>gi|326925350|ref|XP_003208879.1| PREDICTED: ELAV-like protein 4-like [Meleagris gallopavo]
Length = 379
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 82/189 (43%), Gaps = 11/189 (5%)
Query: 73 SATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIEL 132
S TT P +S + + + SKT L+ +P T E+ R+LF G + +L
Sbjct: 31 SNTTNGPSSNSRNCPSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKL 90
Query: 133 SMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKP 191
++ G FV P +A A+N L + +T+KV+YA+ +
Sbjct: 91 VRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS--------- 141
Query: 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAE 251
NL+++ L K+L + F S+ ++++ ++ S G GF+ F + AE
Sbjct: 142 IRDANLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAE 200
Query: 252 TAISAFQGK 260
AI G+
Sbjct: 201 EAIKGLNGQ 209
>gi|125542191|gb|EAY88330.1| hypothetical protein OsI_09789 [Oryza sativa Indica Group]
Length = 252
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 82/170 (48%), Gaps = 14/170 (8%)
Query: 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRN-RGLAFVTMGSPDEATA 156
Y ++VA +P+T+T +IR LFE+ G + ++LS + N RGLAFV+ S + A
Sbjct: 70 YETGKVVASGLPYTTTEAEIRELFERFGPLRSLQLSRFPDSGNFRGLAFVSFESNEVAMK 129
Query: 157 ALNNLESYEFEGRTLKVNYAKI------KKKNPFPPVQPKPFATFNLFIANLSFEARAKD 210
+L L+ ++ R ++V ++ K+ F K + ++ NL ++ D
Sbjct: 130 SL-ELDGFKIGNRFMRVERCRLAAGSKRKRTVEFQTDPKKADGCLSAYVGNLKWDVTETD 188
Query: 211 LREFFISEGWDVVSAEVIFHDNPRRSAGYGF--VSFKSKKVAETAISAFQ 258
LR+FF S + + + F N R GF V F+ + E A+ Q
Sbjct: 189 LRDFFKS----LKISSIRFAINKRTGDSRGFCHVDFEDDESLEKAVGMNQ 234
>gi|119472794|ref|ZP_01614731.1| hypothetical protein ATW7_17592 [Alteromonadales bacterium TW-7]
gi|119444753|gb|EAW26058.1| hypothetical protein ATW7_17592 [Alteromonadales bacterium TW-7]
Length = 159
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 58/99 (58%), Gaps = 5/99 (5%)
Query: 87 AAVNTEQREEEYSKTR-LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKN--RNRGL 143
AA++++ EE KT+ L N+P+ + +RALFE+ G V ++ L + KN + RG
Sbjct: 50 AAISSDVLEEAEVKTKTLYVGNLPYRANEGVVRALFEEQGKVFNVRL-LKDKNTGKRRGF 108
Query: 144 AFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKN 182
FV M D A A+ NL EF+ RTLKV AK K+++
Sbjct: 109 GFVEMAQAD-ADNAIANLNDSEFQQRTLKVREAKQKQED 146
>gi|15020256|gb|AAK74153.1| ELAV-like neuronal protein-2 [Mus musculus]
Length = 347
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 84/181 (46%), Gaps = 13/181 (7%)
Query: 81 VDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNR 139
V+++ ++ V++ E+ SKT L+ +P T E++++LF G + +L +
Sbjct: 21 VNNNCSSPVDSGNTED--SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQ 78
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI 199
+ G FV P +A A+N L + +T+KV+YA+ + NL++
Sbjct: 79 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYV 129
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ L K+L + F G ++++ ++ S G GF+ F + AE AI G
Sbjct: 130 SGLPKTMTQKELEQLFSQYG-RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Query: 260 K 260
+
Sbjct: 189 Q 189
>gi|327263685|ref|XP_003216648.1| PREDICTED: ELAV-like protein 2-like isoform 2 [Anolis carolinensis]
Length = 390
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 86/182 (47%), Gaps = 14/182 (7%)
Query: 81 VDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH--SKN 138
++++ ++ V++ E+ SKT L+ +P T E++++LF G + +L ++
Sbjct: 50 INNNCSSPVDSGNTED--SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEG 107
Query: 139 RNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLF 198
++ G FV P +A A+N L + +T+KV+YA+ + NL+
Sbjct: 108 QSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLY 158
Query: 199 IANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ 258
++ L K+L + F G ++++ ++ S G GF+ F + AE AI
Sbjct: 159 VSGLPKTMTQKELEQLFSQYG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 217
Query: 259 GK 260
G+
Sbjct: 218 GQ 219
>gi|313218343|emb|CBY41581.1| unnamed protein product [Oikopleura dioica]
Length = 613
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 87/189 (46%), Gaps = 26/189 (13%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N+P + +F +HG+V+ + L+ ++R FV+ + + A +
Sbjct: 192 TNVFIKNLPAEWDDAKLTEVFGEHGSVMSVALATDENGKSRQFGFVSFETHECAEKVVEK 251
Query: 161 LESYEFEGRT---------------LKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFE 205
L EFEG+ LKV + K+K + + + + NL++ NL
Sbjct: 252 LHDKEFEGKKIFVGRAQKKAERQAELKVKFEKLKHE------RNQRYQGVNLYVKNLDDS 305
Query: 206 ARAKDLREFFISEGWDVVSAEVIFHDNPR--RSAGYGFVSFKSKKVAETAISAFQGKVIM 263
LRE F G ++ S++V+ + RS G+GFV F S + A A++ G++I
Sbjct: 306 ITDDILREHFAPYG-NITSSKVMTDTDVEGTRSKGFGFVCFTSAEEATKAVTEMNGRIIA 364
Query: 264 C--LVIALS 270
L +AL+
Sbjct: 365 SKPLYVALA 373
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 71/143 (49%), Gaps = 10/143 (6%)
Query: 121 FEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179
F Q G VL I + R+ G A+V P++A A++ + E +G+ +++ ++
Sbjct: 31 FSQAGPVLSIRVCRDMITRRSLGYAYVNFQRPEDAERAIDTMNFDELKGKAIRIMWS--- 87
Query: 180 KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+++P + N+FI NL K L + F + G +++S +V + S GY
Sbjct: 88 QRDP----ALRKSGVGNIFIKNLDKTIDNKMLYDTFSAFG-NILSCKVNV-NLAGESKGY 141
Query: 240 GFVSFKSKKVAETAISAFQGKVI 262
GFV F++++ A AI G ++
Sbjct: 142 GFVHFETEEAAVKAIEKLDGMLM 164
>gi|156554126|ref|XP_001604025.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Nasonia
vitripennis]
Length = 627
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 95/199 (47%), Gaps = 20/199 (10%)
Query: 89 VNTEQREEEYSK-----TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGL 143
++ ++RE+E + T + +N T + ++ +FE++GT+ ++ ++RG
Sbjct: 175 ISRKEREKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMSKDDGKSRGF 234
Query: 144 AFVTMGSPDEATAALNNLESYEF-EGRTLKVNYAKIKK------KNPFPPVQPKPFATF- 195
FV P+ A A+ +L E EG+ + V A+ K K F ++ + +
Sbjct: 235 GFVAFEDPNAADRAVADLNGKEIAEGKIMYVGRAQKKAERQQELKRKFEQLKIERLNRYQ 294
Query: 196 --NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETA 253
NL++ NL + LR+ F G + S +V+ D RS G+GFV F + A A
Sbjct: 295 GVNLYVKNLDDTIDDERLRKEFAPFGT-ITSVKVMMEDG--RSKGFGFVCFSLAEEATKA 351
Query: 254 ISAFQGKVIMC--LVIALS 270
++ G+++ L +AL+
Sbjct: 352 VTEMNGRIVGSKPLYVALA 370
Score = 43.9 bits (102), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 74/155 (47%), Gaps = 15/155 (9%)
Query: 114 HEDIR--ALFEQ---HGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFE 167
H DI LFE+ G VL I + + R+ G A+V P +A AL+ + +
Sbjct: 19 HSDITEAMLFEKFSSAGPVLSIRVCRDAVTRRSLGYAYVNFQQPADAERALDTMNFDIIK 78
Query: 168 GRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEV 227
GR +++ +++ ++P + N+FI NL K + + F + G +++S V
Sbjct: 79 GRPIRIMWSQ---RDP----SLRRSGVGNVFIKNLDKNIDNKAMYDTFSAFG-NILSCRV 130
Query: 228 IFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
D S GYGFV F++++ A +I G ++
Sbjct: 131 A-QDESGSSKGYGFVHFETEEAANKSIDRVNGMLL 164
>gi|149020435|gb|EDL78240.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu
antigen C), isoform CRA_a [Rattus norvegicus]
Length = 251
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 78/166 (46%), Gaps = 17/166 (10%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR----NRGLAFVTMGSPDEA 154
SKT L+ +P T ++ ++LF G++ DIE +++ + G FV P++A
Sbjct: 37 SKTNLIVNYLPQNMTQDEFKSLF---GSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDA 93
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
A+N L + + +T+KV+YA+ + NL+++ L K++ +
Sbjct: 94 DKAINTLNGLKLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMSQKEMEQL 144
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
F G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 145 FSQYGR-IITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQ 189
>gi|46592826|ref|NP_997569.1| ELAV-like protein 2 isoform 3 [Mus musculus]
gi|49114392|gb|AAH46598.2| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B) [Mus musculus]
Length = 347
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 84/181 (46%), Gaps = 13/181 (7%)
Query: 81 VDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNR 139
V+++ ++ V++ E+ SKT L+ +P T E++++LF G + +L +
Sbjct: 21 VNNNCSSPVDSGNTED--SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQ 78
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI 199
+ G FV P +A A+N L + +T+KV+YA+ + NL++
Sbjct: 79 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYV 129
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ L K+L + F G ++++ ++ S G GF+ F + AE AI G
Sbjct: 130 SGLPKTMTQKELEQLFSQYG-RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Query: 260 K 260
+
Sbjct: 189 Q 189
>gi|395333502|gb|EJF65879.1| polyadenylate binding protein [Dichomitus squalens LYAD-421 SS1]
Length = 664
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 79/171 (46%), Gaps = 11/171 (6%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N+ T +D LFEQ G V + + ++RG FV + +EA A+
Sbjct: 229 TNIYVKNLDPEVTQDDFVKLFEQFGNVTSAVIQTDEQGQSRGFGFVNFETHEEAQKAVET 288
Query: 161 LESYEFEGRTLKVNYAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDL 211
L E+ GR L V+ A+ K + + + + + + NL+I NL + + L
Sbjct: 289 LHDSEYHGRKLFVSRAQKKAEREEELRKSYEQAKVEKMSKYQGVNLYIKNLEDDIDDERL 348
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
R+ F E + +++ + D S G+GFV F S A A++ K+I
Sbjct: 349 RQEF--EPFGSITSAKVMRDEKGTSKGFGFVCFSSPDEATKAVAEMNNKMI 397
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 70/144 (48%), Gaps = 10/144 (6%)
Query: 120 LFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178
+F G V I + + R+ G A+V + + AL L +GR ++ +++
Sbjct: 63 IFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQLNYSLIKGRACRIMWSQ- 121
Query: 179 KKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAG 238
++P + N+FI NL + K L + F + G +V+S +V D RS G
Sbjct: 122 --RDPAL----RKTGQGNIFIKNLDEQIDNKALHDTFAAFG-NVLSCKVAT-DEHGRSKG 173
Query: 239 YGFVSFKSKKVAETAISAFQGKVI 262
YGFV +++ + AETAI A G ++
Sbjct: 174 YGFVHYETAEAAETAIKAVNGMLL 197
Score = 37.4 bits (85), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 40/84 (47%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATA 156
+Y L +N+ E +R FE G++ ++ K ++G FV SPDEAT
Sbjct: 328 KYQGVNLYIKNLEDDIDDERLRQEFEPFGSITSAKVMRDEKGTSKGFGFVCFSSPDEATK 387
Query: 157 ALNNLESYEFEGRTLKVNYAKIKK 180
A+ + + + L V+ A+ ++
Sbjct: 388 AVAEMNNKMIGSKPLYVSLAQRRE 411
>gi|149693657|ref|XP_001492578.1| PREDICTED: ELAV-like protein 4 isoform 4 [Equus caballus]
Length = 380
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 83/189 (43%), Gaps = 11/189 (5%)
Query: 73 SATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIEL 132
S+T+ P ++ + + + SKT L+ +P T E+ R+LF G + +L
Sbjct: 18 SSTSNGPSSNNRNCPSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKL 77
Query: 133 SMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKP 191
++ G FV P +A A+N L + +T+KV+YA+ +
Sbjct: 78 VRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS--------- 128
Query: 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAE 251
NL+++ L K+L + F S+ ++++ ++ S G GF+ F + AE
Sbjct: 129 IRDANLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAE 187
Query: 252 TAISAFQGK 260
AI G+
Sbjct: 188 EAIKGLNGQ 196
>gi|436841541|ref|YP_007325919.1| RNP-1 like RNA-binding protein [Desulfovibrio hydrothermalis AM13 =
DSM 14728]
gi|432170447|emb|CCO23818.1| RNP-1 like RNA-binding protein [Desulfovibrio hydrothermalis AM13 =
DSM 14728]
Length = 87
Score = 62.0 bits (149), Expect = 3e-07, Method: Composition-based stats.
Identities = 31/78 (39%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIEL-SMHSKNRNRGLAFVTMGSPDEATAALNNLESYE 165
N+PW+++ +D+RA FE +G V+ ++L R RG FV M + A A++NL+ +
Sbjct: 9 NLPWSASEDDVRAAFEAYGEVISVKLIEDRETGRPRGFGFVEM-EDNGALDAIDNLDGKD 67
Query: 166 FEGRTLKVNYAKIKKKNP 183
F GR LKVN AK + P
Sbjct: 68 FGGRNLKVNEAKPRAPRP 85
>gi|34194032|gb|AAH56530.1| Hnrpa0 protein, partial [Danio rerio]
Length = 303
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 81/173 (46%), Gaps = 6/173 (3%)
Query: 83 SSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNR 141
SS A N +Q E +L + +T++ +R+ FEQ G + D + + + R+R
Sbjct: 2 SSLTAVTNGKQMSEMEKLCKLFVGGLNVQTTNDGLRSYFEQFGNLTDCVVVQNDQLQRSR 61
Query: 142 GLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIAN 201
FVT + +EA AA+ + +G+ ++V A ++ P K +F+
Sbjct: 62 CFGFVTYSTSEEADAAMA-ARPHVVDGKNVEVKRAVAREDAGRPEALAK---VKKIFVGG 117
Query: 202 LSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAI 254
L + KDL EFF G + +EVI + + G+GFV F+ A+ A+
Sbjct: 118 LKDDIEEKDLTEFFSQFGM-IEKSEVITDKDTGKKRGFGFVHFEDNDSADKAV 169
>gi|6754264|ref|NP_034616.1| ELAV-like protein 2 isoform 2 [Mus musculus]
gi|13124206|sp|Q60899.1|ELAV2_MOUSE RecName: Full=ELAV-like protein 2; AltName: Full=ELAV-like neuronal
protein 1; AltName: Full=Hu-antigen B; Short=HuB;
AltName: Full=Nervous system-specific RNA-binding
protein Mel-N1
gi|1144004|gb|AAC52644.1| nervous system-specific RNA binding protein Mel-N1 [Mus musculus]
gi|15020258|gb|AAK74154.1| ELAV-like neuronal protein-1 [Mus musculus]
gi|148699000|gb|EDL30947.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B) [Mus musculus]
Length = 360
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 84/181 (46%), Gaps = 13/181 (7%)
Query: 81 VDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNR 139
V+++ ++ V++ E+ SKT L+ +P T E++++LF G + +L +
Sbjct: 21 VNNNCSSPVDSGNTED--SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQ 78
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI 199
+ G FV P +A A+N L + +T+KV+YA+ + NL++
Sbjct: 79 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYV 129
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ L K+L + F G ++++ ++ S G GF+ F + AE AI G
Sbjct: 130 SGLPKTMTQKELEQLFSQYGR-IITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Query: 260 K 260
+
Sbjct: 189 Q 189
>gi|350633123|gb|EHA21489.1| hypothetical protein ASPNIDRAFT_125918 [Aspergillus niger ATCC
1015]
Length = 264
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 77/165 (46%), Gaps = 5/165 (3%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEF 166
NV + T ED++ E++G V + L + ++ ++G +V S D A A++ L F
Sbjct: 99 NVFYDVTREDLKKAMEKYGVVEKVVLVLDNRGISKGYGYVQFDSIDAAQRAVDALNMRLF 158
Query: 167 EGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAE 226
EGR + V +A+ N + Q T L+I NL FE +DL E F + +VV
Sbjct: 159 EGRRVTVQFAQ---NNVYHRRQLNA-PTRTLYIGNLPFEMTDRDLNELF-KDVQNVVDIR 213
Query: 227 VIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271
V ++ G+ F S A+ A++ + K+ + L Y
Sbjct: 214 VAVDRRTGQARGFAHAEFVSTSSAKAAMAILENKLPYGRRLRLDY 258
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 7/81 (8%)
Query: 187 VQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKS 246
+Q P +FI N+ ++ +DL++ E + VV V+ DN S GYG+V F S
Sbjct: 85 LQEPPTPKETVFIGNVFYDVTREDLKKAM--EKYGVVEKVVLVLDNRGISKGYGYVQFDS 142
Query: 247 KKVAETAISA-----FQGKVI 262
A+ A+ A F+G+ +
Sbjct: 143 IDAAQRAVDALNMRLFEGRRV 163
Score = 38.9 bits (89), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 90 NTEQREEEYSKTR-LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVT 147
N R + + TR L N+P+ T D+ LF+ V+DI +++ + + RG A
Sbjct: 171 NVYHRRQLNAPTRTLYIGNLPFEMTDRDLNELFKDVQNVVDIRVAVDRRTGQARGFAHAE 230
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYAK 177
S A AA+ LE+ GR L+++Y+K
Sbjct: 231 FVSTSSAKAAMAILENKLPYGRRLRLDYSK 260
>gi|328871935|gb|EGG20305.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
fasciculatum]
Length = 567
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 78/169 (46%), Gaps = 3/169 (1%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEAT 155
+E T + +N+ E++R L +G + ++ + K++++G F +PDEA
Sbjct: 181 QELKYTNVYVKNLSEDVNEEELRDLLVPYGKITNLTIMSDEKSKSKGFGFANFETPDEAK 240
Query: 156 AALNNLESYEFEGRTLKVNYA--KIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLRE 213
+ F G+ + V A K++++ + NL+I N+ + LR
Sbjct: 241 NCVEAENGKLFHGKVIYVGRAQKKMEREAELKHKFETKYQGVNLYIKNIDDSIDSDKLRS 300
Query: 214 FFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
F + G + SA+V+ D S G+GFV + + A A++ G+++
Sbjct: 301 TFAAYGT-ITSAKVMRDDKSTSSKGFGFVCYTTPDEASKAVAEMHGRMV 348
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 71/162 (43%), Gaps = 6/162 (3%)
Query: 106 QNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYE 165
+N+ + H+ + F G +L ++ N ++G FV S D A A+ +
Sbjct: 101 KNLDKSVDHKALFDTFSAFGNILSCKVVTDETNVSKGFGFVHYESQDSADKAIMKVNGMI 160
Query: 166 FEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSA 225
+ + V K K+ Q + N+++ NLS + ++LR+ + G ++
Sbjct: 161 INDQKVFVGPFKSSKER----GQTQELKYTNVYVKNLSEDVNEEELRDLLVPYGK--ITN 214
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVI 267
I D +S G+GF +F++ A+ + A GK+ VI
Sbjct: 215 LTIMSDEKSKSKGFGFANFETPDEAKNCVEAENGKLFHGKVI 256
>gi|213403408|ref|XP_002172476.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
gi|212000523|gb|EEB06183.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
Length = 662
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 83/181 (45%), Gaps = 13/181 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N+ T E+ LFE+ G + L + RG FV S + A A++
Sbjct: 260 TNVYIKNIDPEVTDEEFSGLFEKFGAITSFSLVKDESGKPRGFGFVNFESHEAAQKAVDE 319
Query: 161 LESYEFEGRTLKVNYAKI---------KKKNPFPPVQPKPFATFNLFIANLSFEARAKDL 211
+ YEF G+ L V A+ K+ + + NLFI NLS E L
Sbjct: 320 MNDYEFHGKKLYVGRAQKRHEREAELRKRYEQMKLEKMSKYQGVNLFIKNLSDEVDDNLL 379
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIAL 269
+ F + G + SA+V+ +N +S G+GFV + S + A AI+ +++ L +AL
Sbjct: 380 KTEFSAFGT-ITSAKVMTDEN-GKSKGFGFVCYSSPEEATKAIAEMNQRMLAGKPLYVAL 437
Query: 270 S 270
+
Sbjct: 438 A 438
Score = 40.4 bits (93), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 63/144 (43%), Gaps = 10/144 (6%)
Query: 120 LFEQHGTVLDIELSMHSKNRNR-GLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178
+F G V I + + R G A+V + D+ AL L +GR ++ +++
Sbjct: 98 IFSTVGPVASIRVCRDAVTRQSLGYAYVNYHNADDGEKALEELNYSLIKGRACRIMWSQ- 156
Query: 179 KKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAG 238
++P + T N+FI NL K L + F + G ++S +V D S G
Sbjct: 157 --RDP----SLRKTGTGNIFIKNLDPAIDNKALHDTFSAFGT-ILSCKVAL-DEYGNSKG 208
Query: 239 YGFVSFKSKKVAETAISAFQGKVI 262
YGFV F S A AI G ++
Sbjct: 209 YGFVHFASIDSANAAIEHVNGMLL 232
>gi|167519406|ref|XP_001744043.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778005|gb|EDQ91621.1| predicted protein [Monosiga brevicollis MX1]
Length = 563
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 97/197 (49%), Gaps = 17/197 (8%)
Query: 89 VNTEQREEEYSKT--RLVAQNVPWT-STHEDIRALFEQHGTVLDIELSMHSKNRNRGLAF 145
++ ++RE++ +T + +N+P + +T++D++ LFE+ GT+ L+ +++RG F
Sbjct: 172 LSRKEREQQGGRTYTNIYVKNLPDSYATNDDLKKLFEKFGTITSTFLAKDENDKSRGFGF 231
Query: 146 VTMGSPDEATAALNNLESYEFE-------GRTLKVNYAKIKKKNPFPPV---QPKPFATF 195
V + + A AA+ + E E GR +K + + + K + + +
Sbjct: 232 VNFENSEAANAAVEAMNEKEIETDRKLFVGRAMKKHERERELKRIHDKIRQERDEKNKNS 291
Query: 196 NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
NL+I +L + LR+ F G +++ I DN S G+GFV+F S A AI
Sbjct: 292 NLYIKHLPEDVTEDALRDKFSKFG--TITSLKIMTDNNGDSRGFGFVNFDSADEAAAAIQ 349
Query: 256 AFQGKVIMC--LVIALS 270
G +I L +AL+
Sbjct: 350 EMHGSMIDGKPLYVALA 366
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 74/151 (49%), Gaps = 10/151 (6%)
Query: 121 FEQHGTVLDIELSMHSKNRNR-GLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179
F Q G+V+ I + + +R G A+V +A AL L + + ++ +A+
Sbjct: 28 FSQMGSVISIRVCRDAVSRQSLGYAYVNYQQHADAKHALEELNFEKIHDKPCRIMWAQ-- 85
Query: 180 KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+NP + N+FI NL+ E K L + F + G ++S +V D S GY
Sbjct: 86 -RNP----AARRSGAGNIFIKNLNKEIDNKALYDTFSAFGT-ILSCKVAA-DEKGESRGY 138
Query: 240 GFVSFKSKKVAETAISAFQGKVIMCLVIALS 270
GFV F+ ++ A+ AI GK+++ V+ ++
Sbjct: 139 GFVHFEKEEDAQKAIDTVNGKMLLKQVVTVT 169
>gi|148693298|gb|EDL25245.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu
antigen C), isoform CRA_b [Mus musculus]
Length = 250
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 78/166 (46%), Gaps = 17/166 (10%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR----NRGLAFVTMGSPDEA 154
SKT L+ +P T ++ ++LF G++ DIE +++ + G FV P++A
Sbjct: 36 SKTNLIVNYLPQNMTQDEFKSLF---GSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDA 92
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
A+N L + + +T+KV+YA+ + NL+++ L K++ +
Sbjct: 93 DKAINTLNGLKLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMSQKEMEQL 143
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
F G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 144 FSQYGR-IITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQ 188
>gi|15020254|gb|AAK74152.1| ELAV-like neuronal protein-3 [Mus musculus]
Length = 348
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 85/181 (46%), Gaps = 13/181 (7%)
Query: 81 VDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNR 139
V+++ ++ V++ E+ SKT L+ +P T E++++LF G + +L +
Sbjct: 21 VNNNCSSPVDSGNTED--SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQ 78
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI 199
+ G FV P +A A+N L + +T+KV+YA+ + NL++
Sbjct: 79 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYV 129
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ L K+L + F S+ ++++ ++ S G GF+ F + AE AI G
Sbjct: 130 SGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Query: 260 K 260
+
Sbjct: 189 Q 189
>gi|295424162|ref|NP_001171354.1| ELAV-like protein 2 isoform 4 [Mus musculus]
gi|74206254|dbj|BAE24886.1| unnamed protein product [Mus musculus]
gi|149044490|gb|EDL97749.1| rCG53485, isoform CRA_a [Rattus norvegicus]
Length = 359
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 84/181 (46%), Gaps = 13/181 (7%)
Query: 81 VDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNR 139
V+++ ++ V++ E+ SKT L+ +P T E++++LF G + +L +
Sbjct: 21 VNNNCSSPVDSGNTED--SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQ 78
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI 199
+ G FV P +A A+N L + +T+KV+YA+ + NL++
Sbjct: 79 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYV 129
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ L K+L + F G ++++ ++ S G GF+ F + AE AI G
Sbjct: 130 SGLPKTMTQKELEQLFSQYGR-IITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Query: 260 K 260
+
Sbjct: 189 Q 189
>gi|324509105|gb|ADY43836.1| Polyadenylate-binding protein 1, partial [Ascaris suum]
Length = 661
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 80/170 (47%), Gaps = 17/170 (10%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E + LF + G + + + +++G FV +P++A A+N + Y+ K+
Sbjct: 214 EKLEKLFAKFGKITSCAVMSDADGKSKGFGFVAFENPEDAEKAVNEMHEYQLPDSERKLY 273
Query: 175 YAKIKKKNPFPP-----------VQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVV 223
+ +KKN + + + NL++ NL + LR+ F S G +
Sbjct: 274 VCRAQKKNERSAELKRRYEQQKVERMQRYQGVNLYVKNLDDTVDDEVLRQNFESYG-KIT 332
Query: 224 SAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC---LVIALS 270
SA+V+ DN RS G+GFV F+ A A++ GK +MC L +AL+
Sbjct: 333 SAKVMCDDNG-RSKGFGFVCFEKPDEATKAVTEMNGK-MMCTKPLYVALA 380
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 69/143 (48%), Gaps = 10/143 (6%)
Query: 121 FEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179
F G VL I + + R+ G A+V P +A AL+ + G+ +++ +++
Sbjct: 39 FSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALDTMNFDVMYGKPIRIMWSQ-- 96
Query: 180 KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
++P + N+FI NL K + + F G +++S +V +D S GY
Sbjct: 97 -RDP----SMRRSGAGNIFIKNLDKSIDNKAIYDTFSMFG-NILSCKVA-NDEESNSKGY 149
Query: 240 GFVSFKSKKVAETAISAFQGKVI 262
GFV F++++ A+ AI G ++
Sbjct: 150 GFVHFETEESAQKAIEKVNGMLL 172
Score = 41.2 bits (95), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPD 152
+R + Y L +N+ T E +R FE +G + ++ R++G FV PD
Sbjct: 297 ERMQRYQGVNLYVKNLDDTVDDEVLRQNFESYGKITSAKVMCDDNGRSKGFGFVCFEKPD 356
Query: 153 EATAALNNLESYEFEGRTLKVNYAKIKK 180
EAT A+ + + L V A+ K+
Sbjct: 357 EATKAVTEMNGKMMCTKPLYVALAQRKE 384
>gi|14585790|gb|AAK67714.1| HUC [Homo sapiens]
Length = 360
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 78/166 (46%), Gaps = 17/166 (10%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKN----RNRGLAFVTMGSPDEA 154
SKT L+ +P T ++ ++LF G++ DIE ++ R+ G FV P++A
Sbjct: 37 SKTNLIVNYLPQNMTQDEFKSLF---GSIGDIESCKLVRDKITGRDLGYGFVNYPDPNDA 93
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
A+N L + + +T+KV+YA+ + NL+++ L K++ +
Sbjct: 94 DKAINTLNGLKLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMSQKEMEQL 144
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
F G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 145 FSQYG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 189
>gi|307103841|gb|EFN52098.1| hypothetical protein CHLNCDRAFT_59028 [Chlorella variabilis]
Length = 634
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 100/209 (47%), Gaps = 17/209 (8%)
Query: 63 KKVSPFVFHFSATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFE 122
+KV+ + PF+ S ++ + E T + +N+ + ++++A+F
Sbjct: 187 EKVNGMLLEGKKVYVGPFLRRSERSS------DSEVKFTNVFVKNLDEAVSDDEVKAMFA 240
Query: 123 QHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK-- 180
+HGTV + + +++G F+ P++A +A+ L + + L V A+ K
Sbjct: 241 EHGTVNSCIIMRDDEGKSKGFGFINFEEPEQAASAVQALNGKDVNCKELYVGRAQKKAER 300
Query: 181 ----KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNP 233
+ F ++ + A + NL++ NL + + LR F S+ + SA+V+ D+
Sbjct: 301 EAMLRAKFEELRSERIAKYQGMNLYVKNLHDDIDDETLRTEF-SQFGTITSAKVMV-DSA 358
Query: 234 RRSAGYGFVSFKSKKVAETAISAFQGKVI 262
+S G+GFV + S + A A++ G++I
Sbjct: 359 GKSRGFGFVCYASPEEATRAVTEMNGRMI 387
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/160 (21%), Positives = 75/160 (46%), Gaps = 8/160 (5%)
Query: 106 QNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYE 165
+N+ + ++ + F G +L +++ K ++G FV + A A+ +
Sbjct: 134 KNLDRSVDNKALHDTFSAFGNILSCKVAQDLKGESKGYGFVHFEKDESARLAIEKVNGML 193
Query: 166 FEGRTLKVN-YAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVS 224
EG+ + V + + +++ V+ N+F+ NL +++ F G V+
Sbjct: 194 LEGKKVYVGPFLRRSERSSDSEVK-----FTNVFVKNLDEAVSDDEVKAMFAEHG--TVN 246
Query: 225 AEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC 264
+ +I D+ +S G+GF++F+ + A +A+ A GK + C
Sbjct: 247 SCIIMRDDEGKSKGFGFINFEEPEQAASAVQALNGKDVNC 286
Score = 44.3 bits (103), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPD 152
+R +Y L +N+ E +R F Q GT+ ++ + S ++RG FV SP+
Sbjct: 314 ERIAKYQGMNLYVKNLHDDIDDETLRTEFSQFGTITSAKVMVDSAGKSRGFGFVCYASPE 373
Query: 153 EATAALNNLESYEFEGRTLKVNYAK 177
EAT A+ + +G+ + V A+
Sbjct: 374 EATRAVTEMNGRMIKGKPIYVALAQ 398
>gi|348041233|ref|NP_775431.2| ELAV-like protein 2 [Rattus norvegicus]
gi|149044491|gb|EDL97750.1| rCG53485, isoform CRA_b [Rattus norvegicus]
Length = 388
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 84/181 (46%), Gaps = 13/181 (7%)
Query: 81 VDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNR 139
V+++ ++ V++ E+ SKT L+ +P T E++++LF G + +L +
Sbjct: 50 VNNNCSSPVDSGNTED--SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQ 107
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI 199
+ G FV P +A A+N L + +T+KV+YA+ + NL++
Sbjct: 108 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYV 158
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ L K+L + F G ++++ ++ S G GF+ F + AE AI G
Sbjct: 159 SGLPKTMTQKELEQLFSQYG-RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 217
Query: 260 K 260
+
Sbjct: 218 Q 218
>gi|27229298|ref|NP_758827.1| ELAV-like protein 3 [Rattus norvegicus]
gi|34328053|ref|NP_034617.1| ELAV-like protein 3 [Mus musculus]
gi|3913870|sp|Q60900.1|ELAV3_MOUSE RecName: Full=ELAV-like protein 3; AltName: Full=Hu-antigen C;
Short=HuC
gi|1146120|gb|AAC52999.1| mHuC-L [Mus musculus]
gi|26006109|dbj|BAC41352.1| HuC [Rattus norvegicus]
gi|30354162|gb|AAH52097.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu
antigen C) [Mus musculus]
gi|148693297|gb|EDL25244.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu
antigen C), isoform CRA_a [Mus musculus]
gi|149020436|gb|EDL78241.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu
antigen C), isoform CRA_b [Rattus norvegicus]
Length = 367
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 78/166 (46%), Gaps = 17/166 (10%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR----NRGLAFVTMGSPDEA 154
SKT L+ +P T ++ ++LF G++ DIE +++ + G FV P++A
Sbjct: 37 SKTNLIVNYLPQNMTQDEFKSLF---GSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDA 93
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
A+N L + + +T+KV+YA+ + NL+++ L K++ +
Sbjct: 94 DKAINTLNGLKLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMSQKEMEQL 144
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
F G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 145 FSQYG-RIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQ 189
>gi|218200393|gb|EEC82820.1| hypothetical protein OsI_27609 [Oryza sativa Indica Group]
Length = 164
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 72/136 (52%), Gaps = 13/136 (9%)
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI---KKKN----PFPPVQPKPF 192
+RG FVTM S EA A+N L+ ++ +GR + V + K++N PPV+ F
Sbjct: 19 SRGCGFVTMRSLPEARTAMNALDGFDLDGREMLVKLSSDVVSKRRNINMTHTPPVKDHIF 78
Query: 193 AT-FNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAE 251
+ +++ N+++ ++LRE+F S+ VVS ++ R YGF+SF S + E
Sbjct: 79 ESPHKIYVGNIAWSVEPQELREYF-SQCGTVVSTRLLTDRKGGRGRVYGFLSFASAEELE 137
Query: 252 TAI----SAFQGKVIM 263
A+ + F G+ I+
Sbjct: 138 AALKLDNTHFHGRNIL 153
Score = 38.5 bits (88), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
++ N+ W+ +++R F Q GTV+ L K R R F++ S +E AAL
Sbjct: 83 KIYVGNIAWSVEPQELREYFSQCGTVVSTRLLTDRKGGRGRVYGFLSFASAEELEAAL-K 141
Query: 161 LESYEFEGRTLKVNYA 176
L++ F GR + V A
Sbjct: 142 LDNTHFHGRNILVRQA 157
>gi|320583460|gb|EFW97673.1| nuclear localization sequence binding protein [Ogataea
parapolymorpha DL-1]
Length = 500
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 75/177 (42%), Gaps = 20/177 (11%)
Query: 110 WTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEG 168
W + + F+ VL ++ R+RG +V S ++A AL + E EG
Sbjct: 269 WAVDDQRLLEEFQSLDGVLSARVMTERETGRSRGYGYVDFESKEQAQKALEQFQGREIEG 328
Query: 169 RTLKVNYAKIKKKNPF--------------PPVQPKPFATFNLFIANLSFEARAKDLREF 214
R + ++ + K + P P QP + LF+ NLSF+A L+EF
Sbjct: 329 RPINLDMSTSKPQTPSQNQKFQDRAKKYGDTPSQP----SDTLFVGNLSFQADRDTLKEF 384
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271
F G V+ + H + G+G+V F S A+ A+ A G+ I + L +
Sbjct: 385 FEQHGT-VLGIRIPTHPESEQPKGFGYVQFGSVDEAKAALEALNGEYIAGRPVRLDF 440
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRN-RGLAFVTMGSPDEATAALNNL 161
L N+ + + + ++ FEQHGTVL I + H ++ +G +V GS DEA AAL L
Sbjct: 367 LFVGNLSFQADRDTLKEFFEQHGTVLGIRIPTHPESEQPKGFGYVQFGSVDEAKAALEAL 426
Query: 162 ESYEFEGRTLKVNYA 176
GR ++++++
Sbjct: 427 NGEYIAGRPVRLDFS 441
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 48/86 (55%), Gaps = 5/86 (5%)
Query: 185 PPVQPKPFATFNLFIANLSFEARAKDLREFFIS-EGWDVVSAEVIFHDNPRRSAGYGFVS 243
P +PK AT LF+ L++ + L E F S +G V+SA V+ RS GYG+V
Sbjct: 252 PSKKPKEVAT--LFVGRLAWAVDDQRLLEEFQSLDG--VLSARVMTERETGRSRGYGYVD 307
Query: 244 FKSKKVAETAISAFQGKVIMCLVIAL 269
F+SK+ A+ A+ FQG+ I I L
Sbjct: 308 FESKEQAQKALEQFQGREIEGRPINL 333
>gi|33356910|pdb|1FNX|H Chain H, Solution Structure Of The Huc Rbd1-Rbd2 Complexed With The
Au-Rich Element
Length = 174
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 78/166 (46%), Gaps = 17/166 (10%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR----NRGLAFVTMGSPDEA 154
SKT L+ +P T ++ ++LF G++ DIE +++ + G FV P++A
Sbjct: 3 SKTNLIVNYLPQNMTQDEFKSLF---GSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDA 59
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
A+N L + + +T+KV+YA+ P NL+++ L K++ +
Sbjct: 60 DKAINTLNGLKLQTKTIKVSYAR-----P----SSASIRDANLYVSGLPKTMSQKEMEQL 110
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
F G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 111 FSQYGR-IITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQ 155
>gi|344240064|gb|EGV96167.1| ELAV-like protein 3 [Cricetulus griseus]
Length = 352
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 78/166 (46%), Gaps = 17/166 (10%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR----NRGLAFVTMGSPDEA 154
SKT L+ +P T ++ ++LF G++ DIE +++ + G FV P++A
Sbjct: 29 SKTNLIVNYLPQNMTQDEFKSLF---GSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDA 85
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
A+N L + + +T+KV+YA+ + NL+++ L K++ +
Sbjct: 86 DKAINTLNGLKLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMSQKEMEQL 136
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
F G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 137 FSQYG-RIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQ 181
>gi|432874359|ref|XP_004072458.1| PREDICTED: probable RNA-binding protein 19-like [Oryzias latipes]
Length = 921
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRN-RGLAFVTMGSPDEATAALNN 160
RL +N+P+T T EDIR LF +HG + ++ + + + +G AFVT P+ A AL
Sbjct: 399 RLFVRNLPYTCTEEDIRELFSKHGPLSEVLFPIDNLTKKPKGFAFVTYMIPENAVTALAQ 458
Query: 161 LESYEFEGRTLKVNYAKIKKKNP 183
L+ + F+GR L + + +KK+NP
Sbjct: 459 LDRHVFQGRMLHLLPSTVKKENP 481
>gi|358412972|ref|XP_887465.4| PREDICTED: ELAV-like protein 3 isoform 8 [Bos taurus]
Length = 511
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 79/168 (47%), Gaps = 17/168 (10%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR----NRGLAFVTMGSPD 152
+ SKT L+ +P T ++ ++LF G++ DIE +++ + G FV P+
Sbjct: 186 DDSKTNLIVNYLPQNMTQDEFKSLF---GSIGDIESCKLVRDKITGQSLGYGFVNYSDPN 242
Query: 153 EATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLR 212
+A A+N L + + +T+KV+YA+ + NL+++ L K++
Sbjct: 243 DADKAINTLNGLKLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMSQKEME 293
Query: 213 EFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
+ F G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 294 QLFSQYGR-IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 340
>gi|354475185|ref|XP_003499810.1| PREDICTED: ELAV-like protein 3 [Cricetulus griseus]
Length = 359
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 78/166 (46%), Gaps = 17/166 (10%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR----NRGLAFVTMGSPDEA 154
SKT L+ +P T ++ ++LF G++ DIE +++ + G FV P++A
Sbjct: 36 SKTNLIVNYLPQNMTQDEFKSLF---GSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDA 92
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
A+N L + + +T+KV+YA+ + NL+++ L K++ +
Sbjct: 93 DKAINTLNGLKLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMSQKEMEQL 143
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
F G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 144 FSQYG-RIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQ 188
>gi|51893978|ref|YP_076669.1| glycine-rich RNA-binding protein [Symbiobacterium thermophilum IAM
14863]
gi|51857667|dbj|BAD41825.1| glycine-rich RNA-binding protein [Symbiobacterium thermophilum IAM
14863]
Length = 86
Score = 61.6 bits (148), Expect = 3e-07, Method: Composition-based stats.
Identities = 30/75 (40%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIEL-SMHSKNRNRGLAFVTMGSPDEATAALNNLESYE 165
N+PW++T ED+RALFE +G V + + + R+RG FV M + A A+ L +YE
Sbjct: 9 NLPWSTTPEDLRALFEPYGEVENARIITDRETGRSRGFGFVDMADEEAARRAIAELHNYE 68
Query: 166 FEGRTLKVNYAKIKK 180
+ GR L VN A+ ++
Sbjct: 69 YGGRPLTVNEAQARQ 83
>gi|296412014|ref|XP_002835723.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295629512|emb|CAZ79880.1| unnamed protein product [Tuber melanosporum]
Length = 342
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 86/188 (45%), Gaps = 24/188 (12%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATA 156
EYS TRL N+ + +++ F++HG+ +E+ + + G F+ S +A
Sbjct: 4 EYSGTRLYLGNLHKDARKQEVEDFFKEHGSGNVVEIKLMN-----GFGFIQYDSEADAKD 58
Query: 157 ALNNLESYEFEGRTLKVNYAKIKKKNP----FPPVQ----PKPFAT-FNLFIANLSFEAR 207
+ +F+G+ L V +A+ + NP FP P+P T F + I+ L+ +
Sbjct: 59 VVPAYHGRDFKGQPLTVQFARGSRHNPRHHDFPGGADRTFPRPRRTAFRMNISGLNPDTS 118
Query: 208 AKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAI-----SAFQGKVI 262
+DL++F G DVV +EV R G G V F++ A+ + F+G +
Sbjct: 119 WQDLKDFARKSGSDVVFSEVT-----RERDGRGMVEFETHDDLRRAVAFLDRTEFKGTQV 173
Query: 263 MCLVIALS 270
C L+
Sbjct: 174 SCTPDVLA 181
>gi|67537616|ref|XP_662582.1| hypothetical protein AN4978.2 [Aspergillus nidulans FGSC A4]
gi|40741866|gb|EAA61056.1| hypothetical protein AN4978.2 [Aspergillus nidulans FGSC A4]
gi|259482149|tpe|CBF76354.1| TPA: pre-RNA splicing factor Srp2, putative (AFU_orthologue;
AFUA_3G10100) [Aspergillus nidulans FGSC A4]
Length = 296
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 80/181 (44%), Gaps = 24/181 (13%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATA 156
E S TRL N+P T +DI F HGT E+ + + G F+ +A
Sbjct: 3 EVSSTRLYLGNLPRNVTKQDIEEHFSTHGTGKITEIKLMN-----GFGFIEYEDAMDARD 57
Query: 157 ALNNLESYEFEGRTLKVNYAK-IKKKNPFP-----PVQPKPFAT-FNLFIANLSFEARAK 209
+ +F+G L V +A+ ++K FP P P+P T F + I+ L E +
Sbjct: 58 IVPAFHGSDFKGERLTVQFARGPRRKENFPVPTDRPNLPRPRRTIFRMIISGLP-ETSWQ 116
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA-----FQGKVIMC 264
DL++F G DVV +E R G G V F++ +TA+ F+G + C
Sbjct: 117 DLKDFARQSGLDVVYSETG------REPGRGIVEFETANDLKTAVEKLDGREFKGTRVTC 170
Query: 265 L 265
+
Sbjct: 171 V 171
>gi|317106694|dbj|BAJ53195.1| JHL03K20.4 [Jatropha curcas]
Length = 642
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 91/193 (47%), Gaps = 16/193 (8%)
Query: 92 EQREEEYSK---TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTM 148
++RE K + +N+ T+T ED++ +F ++GT+ + ++R FV
Sbjct: 196 QERESAIDKATFNNVYVKNLSETTTEEDLKKIFGEYGTITSAVVMRDGNGKSRCFGFVNF 255
Query: 149 GSPDEATAALNNLESYEFE------GRTLKVNYAKIKKKNPFPPVQPK---PFATFNLFI 199
+PD+A ++ L F+ G+ K + +++ K F + F NL++
Sbjct: 256 ENPDDAAQSVEALNGKTFDEKEWYVGKAQKKSEREVELKGRFEQTLKETVDKFQGLNLYV 315
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
NL L+E F SE + S +V+ N S G GFV+F + + A A++ G
Sbjct: 316 KNLDDSITDDKLKELF-SEFGTITSCKVMRDPN-GVSRGSGFVAFSTAEEASRALTEMNG 373
Query: 260 KVIMC--LVIALS 270
K+++ L +AL+
Sbjct: 374 KMVVSKPLYVALA 386
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 77/171 (45%), Gaps = 18/171 (10%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEAT 155
++ T L ++ T + LF QHG V+ I + + R+ G +V + +A
Sbjct: 25 QFVPTSLYVGDLEQNVTETQLYDLFNQHGQVVSIRVCRDLTSRRSLGYGYVNYNNVHDAA 84
Query: 156 AALNNLESYEFEGRTLKVNYA----KIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDL 211
A+ L G+ +++ Y+ I+K T N++I NL K L
Sbjct: 85 QAIEVLNFTPVNGKPIRIMYSYRDPTIRKS-----------GTGNIYIKNLDKAIDNKAL 133
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
+ F + G ++S +V D+ +S GYGFV F +++ A+ AI G ++
Sbjct: 134 HDTFSAFG-SILSCKVA-TDSLGQSLGYGFVQFDNEESAKNAIDKLNGMLL 182
>gi|905387|gb|AAA70417.1| Hel-N2 [Homo sapiens]
Length = 346
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 84/181 (46%), Gaps = 13/181 (7%)
Query: 81 VDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNR 139
++++ ++ V++ E+ SKT L+ +P T E++++LF G + +L +
Sbjct: 21 INNNCSSPVDSGNTED--SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQ 78
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI 199
+ G FV P +A A+N L + +T+KV+YA+ + NL++
Sbjct: 79 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYV 129
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ L K+L + F G ++++ ++ S G GF+ F + AE AI G
Sbjct: 130 SGLPKTMTQKELEQLFSQYG-RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Query: 260 K 260
+
Sbjct: 189 Q 189
>gi|156366101|ref|XP_001626979.1| predicted protein [Nematostella vectensis]
gi|156213874|gb|EDO34879.1| predicted protein [Nematostella vectensis]
Length = 335
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 73/164 (44%), Gaps = 12/164 (7%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIEL-SMHSKNRNRGLAFVTMGSPDEATAAL 158
+T L+ VP + + EDI+ +F G V +L + ++ G AFV +PD+A A+
Sbjct: 9 RTNLIINYVPPSMSQEDIKKIFGTVGNVTSCKLIRDRATGQSLGYAFVNYDNPDDANKAV 68
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISE 218
+ + +TLKV++A+ NL+I+ L + + +++ F
Sbjct: 69 REMNGARLQNKTLKVSFARPSSTE---------IKNANLYISGLPKDMKEEEVEALFKPF 119
Query: 219 GWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
G + S + D G GFV F + A+TAI K +
Sbjct: 120 GKIITSK--VLKDVSGEGRGTGFVRFDKRCEAQTAIDDLNNKTL 161
>gi|449684824|ref|XP_002156791.2| PREDICTED: ELAV-like protein 2-like, partial [Hydra magnipapillata]
Length = 354
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 85/174 (48%), Gaps = 12/174 (6%)
Query: 89 VNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR-NRGLAFVT 147
++T Q ++ +T L+ +P + E+++ LF G + +L + + G AFV
Sbjct: 3 LDTLQFHDDDKRTNLIVNYLPQEMSEEELKTLFSSVGALESCKLIRDKVTKASLGYAFVN 62
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEAR 207
P++A A+++L+ + +T+KV+YA+ NL+I+ L
Sbjct: 63 YQHPNDARKAIHSLQGMKLTTKTIKVSYAR---------PSSNEIKNANLYISGLPQTCD 113
Query: 208 AKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKV 261
A LRE F G ++++++V+ +N S G GFV F + AE +I A KV
Sbjct: 114 AIRLRELFQFFG-EIITSKVLVDENG-ISRGVGFVRFDKRCQAELSIEALNNKV 165
>gi|429892786|gb|AGA18938.1| heterogeneous nuclear ribonucleoprotein, partial [Drosophila
melanogaster]
Length = 418
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 8/153 (5%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSPDEATAAL 158
+ +L + W +T E++ F + G ++D + + + R+RG FVT P L
Sbjct: 3 RGKLFVYGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVL 62
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISE 218
N + +GRT+ K NP +PK + +F+ L DLR FF
Sbjct: 63 QN-GPHTLDGRTIDP-----KPCNPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTFFNRY 116
Query: 219 GWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAE 251
G V +++ ++S G+GF+SF+ + E
Sbjct: 117 G-KVTEVVIMYDQEKKKSRGFGFLSFEEESSVE 148
>gi|291227649|ref|XP_002733794.1| PREDICTED: polyadenylate-binding protein 1-like [Saccoglossus
kowalevskii]
Length = 655
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 86/169 (50%), Gaps = 17/169 (10%)
Query: 115 EDIRALFEQHGTVLD--IELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
E +R +FE++G ++ + HS RN+G FV P +A A ++L + GR L
Sbjct: 205 EGLREMFERYGKIVSHKVMQDDHS-GRNKGFGFVCFEDPIDAENACDDLNMKDINGRILY 263
Query: 173 VNYA--KIKK----KNPFPPVQPKP---FATFNLFIANLSFEARAKDLREFFISEGWDVV 223
V A KI++ +N F ++ + + NL++ NL + LR+ F+ G +
Sbjct: 264 VGRAQKKIERQAELRNRFELMKAERANRYQGVNLYVKNLDDSLDDERLRKEFMPFGT-IT 322
Query: 224 SAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIALS 270
SA+V+ RS G+GFV F S + A A++ G+++ L +AL+
Sbjct: 323 SAKVMSEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 369
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 76/155 (49%), Gaps = 16/155 (10%)
Query: 114 HEDIR--ALFEQ---HGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFE 167
H D+ LFE+ G +L I + R+ G A+V P +A AL+++ +
Sbjct: 19 HNDVTEAMLFEKFSSAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDSMNFDVIK 78
Query: 168 GRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEV 227
GR +++ +++ ++P + N+FI NL K + + F + G D++S +V
Sbjct: 79 GRPIRIMWSQ---RDP----SLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFG-DILSCKV 130
Query: 228 IFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
+ +N S GYGFV F +++ A +I G ++
Sbjct: 131 VCDENG--SKGYGFVHFATEEAANKSIEKVNGMLL 163
Score = 37.0 bits (84), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPD 152
+R Y L +N+ + E +R F GT+ ++ M R++G FV SP+
Sbjct: 287 ERANRYQGVNLYVKNLDDSLDDERLRKEFMPFGTITSAKV-MSEGGRSKGFGFVCFSSPE 345
Query: 153 EATAALNNLESYEFEGRTLKVNYAKIKK 180
EAT A+ + + L V A+ K+
Sbjct: 346 EATKAVTEMNGRIVSTKPLYVALAQRKE 373
>gi|261488392|emb|CBH19571.1| RNA recognition motif containing protein [Oryza sativa Indica
Group]
Length = 188
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 81/168 (48%), Gaps = 13/168 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRN--RGLAFVTMGSPDEATAALN 159
++ +P +T D F Q+G ++D + M K+ + RG F+T +P ++
Sbjct: 24 KIFVGGLPRDTTEADFVKHFGQYGEIVD-SVIMRDKHTSQPRGFGFITYSNPAVVDRVMD 82
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEG 219
++ +EF G+ ++ IK+ P VQ K F T +F+ L D + FF G
Sbjct: 83 DI--HEFNGKQVE-----IKRTIPKDSVQSKDFKTKKIFVGGLPQAQAEDDFKHFFQKYG 135
Query: 220 WDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVI 267
VV +++ +RS G+GF+ F S +V + ++ GK + L++
Sbjct: 136 -PVVDHQIMRDHQTKRSRGFGFIVFSSDQVVDDLLA--NGKYDLILLV 180
>gi|223999513|ref|XP_002289429.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220974637|gb|EED92966.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 77
Score = 61.6 bits (148), Expect = 3e-07, Method: Composition-based stats.
Identities = 31/78 (39%), Positives = 48/78 (61%), Gaps = 2/78 (2%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKN-RNRGLAFVTMGSPDEATAALNNL 161
L N+ W + +R LFE++G V+D + + + ++RG AF+TMG PDEA A +
Sbjct: 1 LYVGNLSWGTEEGALRELFEEYGRVIDCYIPVDRETGQHRGFAFITMG-PDEALVAADET 59
Query: 162 ESYEFEGRTLKVNYAKIK 179
+ YE +GR L+VN A+ K
Sbjct: 60 DGYELDGRILRVNEAQPK 77
>gi|148298695|ref|NP_001091823.1| poly A binding protein [Bombyx mori]
gi|111608107|gb|ABH10797.1| poly A binding protein [Bombyx mori]
Length = 603
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 91/196 (46%), Gaps = 20/196 (10%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHED-----IRALFEQHGTVLDIELSMHSKNRNRGLAFV 146
++RE+E + + NV + ED ++ +FE++G + ++ +RG FV
Sbjct: 169 KEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFV 228
Query: 147 TMGSPDEATAALNNLESYEF-EGRTLKVNYAKIKK------KNPFPPVQPKPFATF---N 196
PD A A L E EG+ L V A+ K K F ++ + + N
Sbjct: 229 AFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVN 288
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
L++ NL + LR+ F G + SA+V+ D RS G+GFV F S + A A++
Sbjct: 289 LYVKNLDDTIDDERLRKEFAPFGT-ITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTE 345
Query: 257 FQGKVIMC--LVIALS 270
G+++ L +AL+
Sbjct: 346 MNGRIVGTKPLYVALA 361
Score = 44.7 bits (104), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 74/155 (47%), Gaps = 15/155 (9%)
Query: 114 HEDIR--ALFEQ---HGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFE 167
H DI LFE+ G VL I + R+ G A+V P +A AL+ + +
Sbjct: 10 HSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTMNFDIIK 69
Query: 168 GRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEV 227
GR +++ ++ +++P + N+FI NL K L + F + G +++S +V
Sbjct: 70 GRPIRIMWS---QRDP----SLRKSGVGNVFIKNLDKSIDNKALFDTFSAFG-NILSCKV 121
Query: 228 IFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
D S GYGFV F++++ A +I G ++
Sbjct: 122 A-QDETGASKGYGFVHFETEEAANKSIEKVNGMLL 155
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 68/151 (45%), Gaps = 6/151 (3%)
Query: 116 DIRALFEQH---GTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +ALF+ G +L +++ ++G FV + + A ++ + G+ +
Sbjct: 102 DNKALFDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVNGMLLNGKMVY 161
Query: 173 VNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDN 232
V I +K + K N+++ N + + L++ F G + S +V++ D+
Sbjct: 162 VGRF-IPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGR-ITSHKVMYKDD 219
Query: 233 PRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
S G+GFV+F+ AE A GK ++
Sbjct: 220 GN-SRGFGFVAFEDPDAAERACIELNGKELV 249
>gi|348504313|ref|XP_003439706.1| PREDICTED: ELAV-like protein 4-like [Oreochromis niloticus]
Length = 476
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 72/163 (44%), Gaps = 11/163 (6%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T E+ R+LF G + +L ++ G FV P +A A
Sbjct: 154 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 213
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + +T+KV+YA+ + NL+++ L K+L + F
Sbjct: 214 INTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQKELEQLFSQ 264
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 265 YG-RIITSRILVDQVTGGSRGVGFIRFDKRIEAEEAIKGLNGQ 306
>gi|256075089|ref|XP_002573853.1| polyadenylate binding protein [Schistosoma mansoni]
gi|360044950|emb|CCD82498.1| putative polyadenylate binding protein [Schistosoma mansoni]
Length = 688
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 80/180 (44%), Gaps = 14/180 (7%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLE 162
L +N P + +E ++ +F + G + + S+ +++G FV PD A A+ +
Sbjct: 194 LYIKNFPPETDNEKLKEMFNEFGEIKSACVMKDSEGKSKGFGFVCFLDPDHAENAVKTMH 253
Query: 163 SYEFEGRTLKVNYAKIKK----------KNPFPPVQPKPFATFNLFIANLSFEARAKDLR 212
E EGR L A+ K+ + Q NL++ NL K L
Sbjct: 254 GKEIEGRALYCARAQRKEERQEELKQRLEKQRAERQSSYMLNVNLYVKNLDDNIDDKRLE 313
Query: 213 EFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIALS 270
E F G + SA+V+ D RS G+GFV F + + A A++ G +I L +AL+
Sbjct: 314 EAFSVHG-SITSAKVM-KDANNRSKGFGFVCFANPEQAARAVTDMNGTIIGSKPLYVALA 371
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 70/152 (46%), Gaps = 10/152 (6%)
Query: 117 IRALFEQHGTVLDIELSMHSKNRNR-GLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175
++A F + G VL + R+ G +V P A AL L GR +++ +
Sbjct: 29 LQAKFSEIGPVLSARVCRDLATRHSLGYGYVNFEDPKHAEQALEVLNYESLMGRPIRIMW 88
Query: 176 AKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRR 235
++ ++P + N+FI NL K+L + F G ++S +++ +N +
Sbjct: 89 SQ---RDP----SLRKSGKGNIFIKNLDKSIEQKELYDTFSFFGR-ILSCKIVMDENGQ- 139
Query: 236 SAGYGFVSFKSKKVAETAISAFQGKVIMCLVI 267
S GYGFV F+ ++ AE AI +I V+
Sbjct: 140 SKGYGFVHFEKEECAERAIEKINNMIIRDRVV 171
>gi|224085256|ref|XP_002307525.1| predicted protein [Populus trichocarpa]
gi|222856974|gb|EEE94521.1| predicted protein [Populus trichocarpa]
Length = 614
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 79/171 (46%), Gaps = 11/171 (6%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N+ T++ ED++ F +G++ + +++G FV SPD A AA+
Sbjct: 202 TNVYVKNLSETTSDEDLKKFFSNYGSITSAIVMKDQSGKSKGFGFVNFQSPDSAAAAVEK 261
Query: 161 LESYEFEGRTLKVNYAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDL 211
L F + V A+ K K F + + NL++ NL + + L
Sbjct: 262 LNGTTFNDKVWYVGRAQRKGEREAELKARFEQERNSRYEKLKAANLYLKNLDDKIDDEKL 321
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
+E F SE + S +V+ D S G GFV+F + + A A++ GK+I
Sbjct: 322 KELF-SEFGSITSCKVML-DQQGLSKGSGFVAFSTPEEASRALNGMNGKMI 370
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 71/144 (49%), Gaps = 10/144 (6%)
Query: 120 LFEQHGTVLDIELSMHSKNR-NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178
LF Q V+ I + R + G A+V +P +A A+ L G+ +++ +
Sbjct: 42 LFSQVAQVVSIRVCRDQARRASLGYAYVNFSNPQDAANAMELLNFTPLNGKAIRI---MV 98
Query: 179 KKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAG 238
++P + N+FI NL K L+E F S G V+S +V DN +S G
Sbjct: 99 SHRDP----SMRKSGHANVFIKNLDTSIDNKALQETFASFG-PVLSCKVAV-DNNGQSKG 152
Query: 239 YGFVSFKSKKVAETAISAFQGKVI 262
YGFV F++++ A++AI+ G +I
Sbjct: 153 YGFVQFENEEAAQSAINRLNGMLI 176
Score = 37.0 bits (84), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Query: 92 EQREEEYSKTR---LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTM 148
++R Y K + L +N+ E ++ LF + G++ ++ + + ++G FV
Sbjct: 293 QERNSRYEKLKAANLYLKNLDDKIDDEKLKELFSEFGSITSCKVMLDQQGLSKGSGFVAF 352
Query: 149 GSPDEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+P+EA+ ALN + + L V A+ +++
Sbjct: 353 STPEEASRALNGMNGKMIGKKPLYVAVAQRREE 385
>gi|291383147|ref|XP_002708097.1| PREDICTED: ELAV-like 2-like isoform 2 [Oryctolagus cuniculus]
Length = 376
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 84/181 (46%), Gaps = 13/181 (7%)
Query: 81 VDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNR 139
++++ ++ V++ E+ SKT L+ +P T E++++LF G + +L +
Sbjct: 50 INNNCSSPVDSGNTED--SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQ 107
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI 199
+ G FV P +A A+N L + +T+KV+YA+ + NL++
Sbjct: 108 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYV 158
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ L K+L + F G ++++ ++ S G GF+ F + AE AI G
Sbjct: 159 SGLPKTMTQKELEQLFSQYG-RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 217
Query: 260 K 260
+
Sbjct: 218 Q 218
>gi|224063493|ref|XP_002301171.1| predicted protein [Populus trichocarpa]
gi|222842897|gb|EEE80444.1| predicted protein [Populus trichocarpa]
Length = 657
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 89/183 (48%), Gaps = 13/183 (7%)
Query: 92 EQREEEYSKTR---LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTM 148
++R+ S + + +N+ ++T ED++++FE+HG + + + +++ FV
Sbjct: 198 QERDSALSNIKFNNIYVKNLAESTTDEDLKSIFEEHGAITSAVVMRDADGKSKCFGFVNF 257
Query: 149 GSPDEATAALNNLESYEFE------GRTLKVNYAKIKKKNPFPPV--QPKPFATFNLFIA 200
+ D+A A+ L +F+ G+ K + +++ K F + + NL+I
Sbjct: 258 ENVDDAAKAVEALNGKKFDDKEWYVGKAQKKSERELELKGRFEQSLESVEKYQAVNLYIK 317
Query: 201 NLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
NL + L+E F G +++ + HD S G GFV+F + + A A++ GK
Sbjct: 318 NLDDSVNDEKLKELFSDFG--TITSCKVMHDPSGISRGSGFVAFSTPEEASRALAELNGK 375
Query: 261 VIM 263
+++
Sbjct: 376 MVV 378
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 78/167 (46%), Gaps = 10/167 (5%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEAT 155
++ T L ++ + T + LF Q G V+ + + S R+ G +V +P +A
Sbjct: 27 QFVPTSLYVGDLDFNVTDSQLYDLFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPQDAA 86
Query: 156 AALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFF 215
AL+ L + L++ Y+ P ++ A N+FI NL K L + F
Sbjct: 87 RALDVLNFTPLNNKPLRIMYSHRD-----PSIRKSGMA--NIFIKNLDKTIDHKALHDTF 139
Query: 216 ISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
S G +++S +V D +S GYGFV F S++ A+ AI G +I
Sbjct: 140 SSFG-NILSCKVA-TDASGQSKGYGFVQFDSEEAAQNAIDKLNGMLI 184
Score = 37.0 bits (84), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 40/86 (46%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEAT 155
E+Y L +N+ + E ++ LF GT+ ++ +RG FV +P+EA+
Sbjct: 307 EKYQAVNLYIKNLDDSVNDEKLKELFSDFGTITSCKVMHDPSGISRGSGFVAFSTPEEAS 366
Query: 156 AALNNLESYEFEGRTLKVNYAKIKKK 181
AL L + L V A+ K++
Sbjct: 367 RALAELNGKMVVSKPLYVAPAQRKEE 392
>gi|119113388|ref|XP_309558.3| AGAP011092-PA [Anopheles gambiae str. PEST]
gi|116131767|gb|EAA05186.3| AGAP011092-PA [Anopheles gambiae str. PEST]
Length = 634
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 93/199 (46%), Gaps = 21/199 (10%)
Query: 89 VNTEQREEEYSK-----TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGL 143
++ ++RE+E + T + +N T E +R +FE+ G + + M ++RG
Sbjct: 166 ISRKEREKELGEKAKLFTNVYVKNFGEDLTEEALRDMFEKFGPITSHRV-MTKDGKSRGF 224
Query: 144 AFVTMGSPDEATAALNNLESYEFE-------GRTLKVNYAKIKKKNPFPPVQPKPFATF- 195
FV P++A A+ L E GR K N +++ K F ++ + +
Sbjct: 225 GFVAFEKPEDAEEAVQKLNGKELSDGKVLYVGRAQKKNERQMELKRRFEQLKMERLTRYH 284
Query: 196 --NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETA 253
NL++ NL + LR+ F G + SA+V+ + RS G+GFV F + A A
Sbjct: 285 GVNLYVKNLDDTIDDERLRKEFAPYGT-ITSAKVMLDEG--RSKGFGFVCFSAPDEATKA 341
Query: 254 ISAFQGKVIMC--LVIALS 270
++ G+++ L +AL+
Sbjct: 342 VTEMNGRIVGSKPLYVALA 360
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 77/155 (49%), Gaps = 15/155 (9%)
Query: 114 HEDIR--ALFEQ---HGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNNLESYEFE 167
H DI LFE+ G VL I + R+ G A+V P +A AL+ + +
Sbjct: 10 HSDITEATLFEKFSSAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALDTMNFDPIK 69
Query: 168 GRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEV 227
GR +++ +++ ++P + N+FI NL + K + + F + G +++S +V
Sbjct: 70 GRPIRIMWSQ---RDP----SLRKSGVGNVFIKNLDKKIDNKAMYDTFSAFG-NILSCKV 121
Query: 228 IFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
D +S GYGFV F++++ A T+I G ++
Sbjct: 122 A-QDEKGQSKGYGFVHFETEESANTSIEKVNGMLL 155
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 62/140 (44%), Gaps = 4/140 (2%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L +++ K +++G FV + + A ++ + + + V I +
Sbjct: 110 FSAFGNILSCKVAQDEKGQSKGYGFVHFETEESANTSIEKVNGMLLNEKKVYVGRF-ISR 168
Query: 181 KNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYG 240
K + K N+++ N + + LR+ F G + S V+ D +S G+G
Sbjct: 169 KEREKELGEKAKLFTNVYVKNFGEDLTEEALRDMFEKFG-PITSHRVMTKDG--KSRGFG 225
Query: 241 FVSFKSKKVAETAISAFQGK 260
FV+F+ + AE A+ GK
Sbjct: 226 FVAFEKPEDAEEAVQKLNGK 245
Score = 38.5 bits (88), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPD 152
+R Y L +N+ T E +R F +GT+ ++ M + R++G FV +PD
Sbjct: 278 ERLTRYHGVNLYVKNLDDTIDDERLRKEFAPYGTITSAKV-MLDEGRSKGFGFVCFSAPD 336
Query: 153 EATAALNNLESYEFEGRTLKVNYAKIKKK 181
EAT A+ + + L V A+ K++
Sbjct: 337 EATKAVTEMNGRIVGSKPLYVALAQRKEE 365
>gi|148227710|ref|NP_001085351.1| embryonic polyadenylate-binding protein B [Xenopus laevis]
gi|82236619|sp|Q6GR16.1|EPABB_XENLA RecName: Full=Embryonic polyadenylate-binding protein B;
Short=Embryonic poly(A)-binding protein B; Short=ePAB-B;
Short=ePABP-B; AltName: Full=XePABP-B
gi|49257242|gb|AAH71118.1| MGC81363 protein [Xenopus laevis]
Length = 629
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 90/194 (46%), Gaps = 19/194 (9%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHED-----IRALFEQHGTVLDIELSMHSKNRNRGLAFVT 147
+RE EY + NV + ED ++ +F G L +++ M + R+RG FV
Sbjct: 178 ERELEYGAKVMEFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVN 237
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYA--KIKK----KNPFPPVQPKPFATF---NLF 198
G+ +EA A+ + E GR + V A +I++ K F ++ + + NL+
Sbjct: 238 YGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLY 297
Query: 199 IANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ 258
+ NL LR+ F G + S +V+ S G+GFV F S + A A++
Sbjct: 298 VKNLDDGIDDDRLRKEFSPYG-TITSTKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMN 354
Query: 259 GKVIMC--LVIALS 270
G+++ L +AL+
Sbjct: 355 GRIVSTKPLYVALA 368
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 70/143 (48%), Gaps = 11/143 (7%)
Query: 121 FEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179
F G ++ I + + R+ G A++ P +A AL+ + +GR +++ +++
Sbjct: 31 FSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTMNFEVIKGRPIRIMWSQ-- 88
Query: 180 KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
++P + N+FI NL K L + F + G D++S +V+ + R GY
Sbjct: 89 -RDP----GLRKSGVGNVFIKNLDDSIDNKALYDTFSAFG-DILSCKVVCDEYGSR--GY 140
Query: 240 GFVSFKSKKVAETAISAFQGKVI 262
GFV F++++ A AI G ++
Sbjct: 141 GFVHFETQEAANRAIQTMNGMLL 163
>gi|357440407|ref|XP_003590481.1| 30 kDa ribonucleoprotein [Medicago truncatula]
gi|355479529|gb|AES60732.1| 30 kDa ribonucleoprotein [Medicago truncatula]
gi|388503166|gb|AFK39649.1| unknown [Medicago truncatula]
Length = 280
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 79/187 (42%), Gaps = 19/187 (10%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNN 160
RL N+P++ + +FE G V +E+ S R+RG FVTM S E AA
Sbjct: 85 RLFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAAQQ 144
Query: 161 LESYEFEGRTLKVNYAKIK---------KKNP--------FPPVQPKPFATFNLFIANLS 203
L Y +GR L+VN +NP PP + + NL+
Sbjct: 145 LNGYVVDGRELRVNAGPPPPPRSENSRFGENPRFGGDRPRGPPRGGSSDGDNRVHVGNLA 204
Query: 204 FEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
+ L F +G V+ A+VI+ RS G+GFV+F S ++AI G +
Sbjct: 205 WGVDNLALESLFGEQGQ-VLEAKVIYDRESGRSRGFGFVTFSSADEVDSAIRTLDGADLN 263
Query: 264 CLVIALS 270
I +S
Sbjct: 264 GRAIRVS 270
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAA 157
R+ N+ W + + +LF + G VL+ ++ + R+RG FVT S DE +A
Sbjct: 194 GDNRVHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSA 253
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPF 184
+ L+ + GR ++V+ A + K F
Sbjct: 254 IRTLDGADLNGRAIRVSPADSRPKRQF 280
>gi|351713507|gb|EHB16426.1| ELAV-like protein 4 [Heterocephalus glaber]
Length = 385
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 81/189 (42%), Gaps = 11/189 (5%)
Query: 73 SATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIEL 132
S T+ P ++ + + + SKT L+ +P T E+ R+LF G + +L
Sbjct: 23 SNTSNGPSTNNRNCPSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKL 82
Query: 133 SMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKP 191
++ G FV P +A A+N L + +T+KV+YA+ +
Sbjct: 83 VRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS--------- 133
Query: 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAE 251
NL+++ L K+L + F G ++++ ++ S G GF+ F + AE
Sbjct: 134 IRDANLYVSGLPKTMTQKELEQLFSQYG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAE 192
Query: 252 TAISAFQGK 260
AI G+
Sbjct: 193 EAIKGLNGQ 201
>gi|148698436|gb|EDL30383.1| mCG5546, isoform CRA_b [Mus musculus]
Length = 580
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 81/166 (48%), Gaps = 14/166 (8%)
Query: 116 DIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175
+++ LF Q G L +++ S +++G FV+ ++A A+ + E G+ + V
Sbjct: 223 NLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGR 282
Query: 176 AKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSAE 226
A+ K K F ++ + + + NL+I NL + LR F G + SA+
Sbjct: 283 AQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRREFSPFG-SITSAK 341
Query: 227 VIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIALS 270
V+ D RS G+GFV F S + A A++ G+++ L +AL+
Sbjct: 342 VMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 385
Score = 37.0 bits (84), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ ++ M R++G FV SP
Sbjct: 302 QERISRYQGVNLYIKNLDDTIDDEKLRREFSPFGSITSAKV-MLEDGRSKGFGFVCFSSP 360
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 361 EEATKAVTEMNGRIVGSKPLYVALAQRKEE 390
>gi|149240785|ref|XP_001526223.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146450346|gb|EDK44602.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 601
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 92/190 (48%), Gaps = 13/190 (6%)
Query: 86 AAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQ-HGTVLDIELSMHSKNR-NRGL 143
A+AVN + E S L N+ +++ E I +F + I+L ++ KN+
Sbjct: 88 ASAVNGGR---EISNKILYVGNLAKSASEEQINEIFSSVSNPIKSIKL-LNDKNKLGFNY 143
Query: 144 AFVTMGSPDEATAALNNLESYEFEGRTLKVNYA--KIKKKNPFPPVQPKPFATFNLFIAN 201
AF+ ++A ALN+L + G +KVN+A P +P ++N+F+ +
Sbjct: 144 AFIEFNESEDAEKALNSLNGKDVNGSDIKVNWAYQSAAIAGGSTPEEP----SYNIFVGD 199
Query: 202 LSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKV 261
LS E + L++ F G + A V++ RS GYGFV+F ++ AE A+ + G+
Sbjct: 200 LSSEVNDEALKKAFTKFG-SLKQAHVMWDMQTSRSRGYGFVTFGKQEDAENALQSMNGEW 258
Query: 262 IMCLVIALSY 271
+ I ++
Sbjct: 259 LGGRAIRCNW 268
>gi|119578987|gb|EAW58583.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B), isoform CRA_b [Homo sapiens]
Length = 373
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 85/181 (46%), Gaps = 13/181 (7%)
Query: 81 VDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNR 139
++++ ++ V++ E+ SKT L+ +P T E++++LF G + +L +
Sbjct: 35 INNNCSSPVDSGNTED--SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQ 92
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI 199
+ G FV P +A A+N L + +T+KV+YA+ + NL++
Sbjct: 93 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYV 143
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ L K+L + F S+ ++++ ++ S G GF+ F + AE AI G
Sbjct: 144 SGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 202
Query: 260 K 260
+
Sbjct: 203 Q 203
>gi|119578988|gb|EAW58584.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B), isoform CRA_c [Homo sapiens]
Length = 360
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 85/181 (46%), Gaps = 13/181 (7%)
Query: 81 VDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNR 139
++++ ++ V++ E+ SKT L+ +P T E++++LF G + +L +
Sbjct: 35 INNNCSSPVDSGNTED--SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQ 92
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI 199
+ G FV P +A A+N L + +T+KV+YA+ + NL++
Sbjct: 93 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYV 143
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ L K+L + F S+ ++++ ++ S G GF+ F + AE AI G
Sbjct: 144 SGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 202
Query: 260 K 260
+
Sbjct: 203 Q 203
>gi|283945529|ref|NP_001164666.1| ELAV-like protein 2 isoform b [Homo sapiens]
gi|283945537|ref|NP_001164668.1| ELAV-like protein 2 isoform b [Homo sapiens]
gi|386781798|ref|NP_001247929.1| ELAV-like protein 2 [Macaca mulatta]
gi|73971067|ref|XP_865045.1| PREDICTED: ELAV-like protein 2 isoform 2 [Canis lupus familiaris]
gi|296190040|ref|XP_002743027.1| PREDICTED: ELAV-like protein 2 isoform 3 [Callithrix jacchus]
gi|296190042|ref|XP_002743028.1| PREDICTED: ELAV-like protein 2 isoform 4 [Callithrix jacchus]
gi|311245697|ref|XP_003121925.1| PREDICTED: ELAV-like protein 2 isoform 2 [Sus scrofa]
gi|332229735|ref|XP_003264043.1| PREDICTED: ELAV-like protein 2 isoform 1 [Nomascus leucogenys]
gi|332229739|ref|XP_003264045.1| PREDICTED: ELAV-like protein 2 isoform 3 [Nomascus leucogenys]
gi|332831658|ref|XP_003312071.1| PREDICTED: ELAV-like protein 2 isoform 1 [Pan troglodytes]
gi|332831662|ref|XP_003312072.1| PREDICTED: ELAV-like protein 2 isoform 2 [Pan troglodytes]
gi|338719470|ref|XP_003364010.1| PREDICTED: ELAV-like protein 2 isoform 2 [Equus caballus]
gi|344271095|ref|XP_003407377.1| PREDICTED: ELAV-like protein 2-like [Loxodonta africana]
gi|402897263|ref|XP_003911688.1| PREDICTED: ELAV-like protein 2 isoform 2 [Papio anubis]
gi|402897265|ref|XP_003911689.1| PREDICTED: ELAV-like protein 2 isoform 3 [Papio anubis]
gi|402897267|ref|XP_003911690.1| PREDICTED: ELAV-like protein 2 isoform 4 [Papio anubis]
gi|403272640|ref|XP_003928160.1| PREDICTED: ELAV-like protein 2 isoform 2 [Saimiri boliviensis
boliviensis]
gi|403272642|ref|XP_003928161.1| PREDICTED: ELAV-like protein 2 isoform 3 [Saimiri boliviensis
boliviensis]
gi|410042502|ref|XP_003951453.1| PREDICTED: ELAV-like protein 2 [Pan troglodytes]
gi|410978370|ref|XP_003995566.1| PREDICTED: ELAV-like protein 2-like isoform 1 [Felis catus]
gi|426220515|ref|XP_004004460.1| PREDICTED: ELAV-like protein 2 isoform 2 [Ovis aries]
gi|426220517|ref|XP_004004461.1| PREDICTED: ELAV-like protein 2 isoform 3 [Ovis aries]
gi|426361463|ref|XP_004047930.1| PREDICTED: ELAV-like protein 2 isoform 2 [Gorilla gorilla gorilla]
gi|426361465|ref|XP_004047931.1| PREDICTED: ELAV-like protein 2 isoform 3 [Gorilla gorilla gorilla]
gi|426361467|ref|XP_004047932.1| PREDICTED: ELAV-like protein 2 isoform 4 [Gorilla gorilla gorilla]
gi|441622584|ref|XP_004088846.1| PREDICTED: ELAV-like protein 2 [Nomascus leucogenys]
gi|21265137|gb|AAH30692.1| ELAVL2 protein [Homo sapiens]
gi|119578985|gb|EAW58581.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B), isoform CRA_a [Homo sapiens]
gi|119578986|gb|EAW58582.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B), isoform CRA_a [Homo sapiens]
gi|123981428|gb|ABM82543.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B) [synthetic construct]
gi|123996267|gb|ABM85735.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B) [synthetic construct]
gi|157928304|gb|ABW03448.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B) [synthetic construct]
gi|384945702|gb|AFI36456.1| ELAV-like protein 2 isoform b [Macaca mulatta]
gi|384945704|gb|AFI36457.1| ELAV-like protein 2 isoform b [Macaca mulatta]
gi|387541444|gb|AFJ71349.1| ELAV-like protein 2 isoform b [Macaca mulatta]
Length = 346
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 84/181 (46%), Gaps = 13/181 (7%)
Query: 81 VDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNR 139
++++ ++ V++ E+ SKT L+ +P T E++++LF G + +L +
Sbjct: 21 INNNCSSPVDSGNTED--SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQ 78
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI 199
+ G FV P +A A+N L + +T+KV+YA+ + NL++
Sbjct: 79 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYV 129
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ L K+L + F G ++++ ++ S G GF+ F + AE AI G
Sbjct: 130 SGLPKTMTQKELEQLFSQYG-RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Query: 260 K 260
+
Sbjct: 189 Q 189
>gi|359067954|ref|XP_002707879.2| PREDICTED: LOW QUALITY PROTEIN: eLAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B)-like [Bos
taurus]
Length = 346
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 84/181 (46%), Gaps = 13/181 (7%)
Query: 81 VDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNR 139
++++ ++ V++ E+ SKT L+ +P T E++++LF G + +L +
Sbjct: 21 INNNCSSPVDSGNTED--SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQ 78
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI 199
+ G FV P +A A+N L + +T+KV+YA+ + NL++
Sbjct: 79 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYV 129
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ L K+L + F G ++++ ++ S G GF+ F + AE AI G
Sbjct: 130 SGLPKTMTQKELEQLFSQYG-RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Query: 260 K 260
+
Sbjct: 189 Q 189
>gi|255646669|gb|ACU23808.1| unknown [Glycine max]
Length = 125
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 57/110 (51%), Gaps = 5/110 (4%)
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEAR 207
M ++ A + NL EF GRTL+VN++ K P P+ P+ LF+ NLS+
Sbjct: 1 MSCIEDCNAVIENLNGKEFLGRTLRVNFSS--KPKPKEPLYPE--TEHKLFVGNLSWSVT 56
Query: 208 AKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAF 257
+ L + F G VV A V++ RS GYGFV + ++ E A++A
Sbjct: 57 NEILTQAFQEYG-TVVGARVLYDGETGRSRGYGFVCYSTQAEMEAAVAAL 105
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
+L N+ W+ T+E + F+++GTV+ + + R+RG FV + E AA+
Sbjct: 45 KLFVGNLSWSVTNEILTQAFQEYGTVVGARVLYDGETGRSRGYGFVCYSTQAEMEAAVAA 104
Query: 161 LESYEFEGRTLKVNYAKIKK 180
L E EGR ++V+ A+ K+
Sbjct: 105 LNDVELEGRAMRVSLAQGKR 124
>gi|521144|gb|AAA69698.1| ELAV-like neuronal protein 1 [Homo sapiens]
Length = 359
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 85/181 (46%), Gaps = 13/181 (7%)
Query: 81 VDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNR 139
++++ ++ V++ E+ SKT L+ +P T E++++LF G + +L +
Sbjct: 21 INNNCSSPVDSGNTED--SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQ 78
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI 199
+ G FV P +A A+N L + +T+KV+YA+ + NL++
Sbjct: 79 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYV 129
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ L K+L + F S+ ++++ ++ S G GF+ F + AE AI G
Sbjct: 130 SGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Query: 260 K 260
+
Sbjct: 189 Q 189
>gi|356532261|ref|XP_003534692.1| PREDICTED: splicing factor 3B subunit 4-like [Glycine max]
Length = 365
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 77/155 (49%), Gaps = 9/155 (5%)
Query: 120 LFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178
LF Q G V+++ + N+++G FV S ++A A+ L + G+ ++VN A
Sbjct: 44 LFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQ 103
Query: 179 KKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAG 238
KK+ NLFI NL + K L + F + G V + +++ + S G
Sbjct: 104 DKKSLD--------VGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRG 155
Query: 239 YGFVSFKSKKVAETAISAFQGKVIMCLVIALSYLY 273
+GF+S+ S + +++AI A G+ + I +SY Y
Sbjct: 156 FGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAY 190
>gi|119578990|gb|EAW58586.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B), isoform CRA_e [Homo sapiens]
Length = 374
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 85/181 (46%), Gaps = 13/181 (7%)
Query: 81 VDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNR 139
++++ ++ V++ E+ SKT L+ +P T E++++LF G + +L +
Sbjct: 35 INNNCSSPVDSGNTED--SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQ 92
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI 199
+ G FV P +A A+N L + +T+KV+YA+ + NL++
Sbjct: 93 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYV 143
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ L K+L + F S+ ++++ ++ S G GF+ F + AE AI G
Sbjct: 144 SGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 202
Query: 260 K 260
+
Sbjct: 203 Q 203
>gi|242822492|ref|XP_002487897.1| nucleolin protein Nsr1, putative [Talaromyces stipitatus ATCC
10500]
gi|218712818|gb|EED12243.1| nucleolin protein Nsr1, putative [Talaromyces stipitatus ATCC
10500]
Length = 479
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 75/181 (41%), Gaps = 13/181 (7%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVTMGSPDEATAALNNL 161
L N+ W E +R FE+ G + + ++ R+RG +V A AA
Sbjct: 233 LFVGNLSWNVDEEWLRREFEEFGELSGVRIMTERESGRSRGFGYVEYADASSAKAAYEAK 292
Query: 162 ESYEFEGRTLKVNYAKIKKKNPFPPVQP-----KPFA------TFNLFIANLSFEARAKD 210
+ E +GRT+ ++YAK + N P + + F + LF+ NL F
Sbjct: 293 KDAEIDGRTINLDYAKPRDANNQAPREKAQNRARSFGDQTSPESNTLFVGNLVFGVDENA 352
Query: 211 LREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALS 270
+RE F +G + + R GYG+V F S A A++ QG I I L
Sbjct: 353 VREVFEGQGQ-IQGIRLPTDAETGRPKGYGYVEFSSVDEARQALNDLQGTDIGGRAIRLD 411
Query: 271 Y 271
+
Sbjct: 412 F 412
Score = 41.2 bits (95), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 117 IRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175
+R +FE G + I L ++ R +G +V S DEA ALN+L+ + GR +++++
Sbjct: 353 VREVFEGQGQIQGIRLPTDAETGRPKGYGYVEFSSVDEARQALNDLQGTDIGGRAIRLDF 412
Query: 176 A 176
+
Sbjct: 413 S 413
>gi|195117176|ref|XP_002003125.1| GI24040 [Drosophila mojavensis]
gi|193913700|gb|EDW12567.1| GI24040 [Drosophila mojavensis]
Length = 423
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 71/157 (45%), Gaps = 8/157 (5%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSPDEA 154
EE + +L + W +T E++ F + G ++D + + + R+RG FVT P
Sbjct: 2 EEDERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPGNV 61
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
L + + +GRT+ K NP +PK + +F+ L DLR F
Sbjct: 62 NHVLQS-GPHTLDGRTIDP-----KPCNPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTF 115
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAE 251
F G V +++ ++S G+GF+SF+ + E
Sbjct: 116 FGRYG-KVTEVVIMYDQEKKKSRGFGFLSFEEEASVE 151
>gi|49119672|gb|AAH72716.1| Zgc:91918 [Danio rerio]
Length = 360
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 75/165 (45%), Gaps = 11/165 (6%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEAT 155
E SKT L+ +P T E++++LF G + +L ++ G FV P +A
Sbjct: 35 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKDAE 94
Query: 156 AALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFF 215
A+N L + +T+KV+YA+ + NL+++ L K+L + F
Sbjct: 95 KAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQKELEQLF 145
Query: 216 ISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
S+ ++++ ++ S G GF+ F + AE AI G+
Sbjct: 146 -SQFGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLNGQ 189
>gi|115511032|ref|NP_004423.2| ELAV-like protein 2 isoform a [Homo sapiens]
gi|197097794|ref|NP_001127414.1| ELAV-like protein 2 [Pongo abelii]
gi|149736900|ref|XP_001498035.1| PREDICTED: ELAV-like protein 2 isoform 1 [Equus caballus]
gi|291383145|ref|XP_002708096.1| PREDICTED: ELAV-like 2-like isoform 1 [Oryctolagus cuniculus]
gi|296190038|ref|XP_002743026.1| PREDICTED: ELAV-like protein 2 isoform 2 [Callithrix jacchus]
gi|311245695|ref|XP_001924617.2| PREDICTED: ELAV-like protein 2 isoform 1 [Sus scrofa]
gi|332229737|ref|XP_003264044.1| PREDICTED: ELAV-like protein 2 isoform 2 [Nomascus leucogenys]
gi|332831660|ref|XP_520515.3| PREDICTED: ELAV-like protein 2 isoform 3 [Pan troglodytes]
gi|345777488|ref|XP_865062.2| PREDICTED: ELAV-like protein 2 isoform 3 [Canis lupus familiaris]
gi|402897261|ref|XP_003911687.1| PREDICTED: ELAV-like protein 2 isoform 1 [Papio anubis]
gi|403272638|ref|XP_003928159.1| PREDICTED: ELAV-like protein 2 isoform 1 [Saimiri boliviensis
boliviensis]
gi|426220513|ref|XP_004004459.1| PREDICTED: ELAV-like protein 2 isoform 1 [Ovis aries]
gi|426361461|ref|XP_004047929.1| PREDICTED: ELAV-like protein 2 isoform 1 [Gorilla gorilla gorilla]
gi|75070704|sp|Q5R9Z6.1|ELAV2_PONAB RecName: Full=ELAV-like protein 2
gi|93141258|sp|Q12926.2|ELAV2_HUMAN RecName: Full=ELAV-like protein 2; AltName: Full=ELAV-like neuronal
protein 1; AltName: Full=Hu-antigen B; Short=HuB;
AltName: Full=Nervous system-specific RNA-binding
protein Hel-N1
gi|55729364|emb|CAH91414.1| hypothetical protein [Pongo abelii]
gi|119578989|gb|EAW58585.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B), isoform CRA_d [Homo sapiens]
gi|261860488|dbj|BAI46766.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like protein 2
[synthetic construct]
gi|380784355|gb|AFE64053.1| ELAV-like protein 2 isoform a [Macaca mulatta]
Length = 359
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 84/181 (46%), Gaps = 13/181 (7%)
Query: 81 VDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNR 139
++++ ++ V++ E+ SKT L+ +P T E++++LF G + +L +
Sbjct: 21 INNNCSSPVDSGNTED--SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQ 78
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI 199
+ G FV P +A A+N L + +T+KV+YA+ + NL++
Sbjct: 79 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYV 129
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ L K+L + F G ++++ ++ S G GF+ F + AE AI G
Sbjct: 130 SGLPKTMTQKELEQLFSQYGR-IITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Query: 260 K 260
+
Sbjct: 189 Q 189
>gi|452001712|gb|EMD94171.1| hypothetical protein COCHEDRAFT_1020240 [Cochliobolus
heterostrophus C5]
Length = 325
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 73/159 (45%), Gaps = 5/159 (3%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEF 166
N+ + T + ++ +F + G + + + ++ +RG A+V + +A AA++NL+ F
Sbjct: 142 NLYYEVTPDQLKRVFSRFGDIESVRMVYDNRGLSRGFAYVEYKNVSDAQAAIDNLDMQVF 201
Query: 167 EGRTLKVNYAKIK---KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVV 223
EGR L V Y K K P +P P T LFI N+SFE KDL + F + +V
Sbjct: 202 EGRNLVVQYHSPKYQTTKARSPNGEPNP-PTKTLFIGNMSFEMSDKDLNDLF-RDIRNVT 259
Query: 224 SAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
V + G+ F A A + K+I
Sbjct: 260 DVRVAIDRRTGQPRGFAHADFIDVASATRAKEVLKEKII 298
>gi|410978372|ref|XP_003995567.1| PREDICTED: ELAV-like protein 2-like isoform 2 [Felis catus]
Length = 360
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 84/181 (46%), Gaps = 13/181 (7%)
Query: 81 VDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNR 139
++++ ++ V++ E+ SKT L+ +P T E++++LF G + +L +
Sbjct: 21 INNNCSSPVDSGNTED--SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQ 78
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI 199
+ G FV P +A A+N L + +T+KV+YA+ + NL++
Sbjct: 79 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYV 129
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ L K+L + F G ++++ ++ S G GF+ F + AE AI G
Sbjct: 130 SGLPKTMTQKELEQLFSQYGR-IITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Query: 260 K 260
+
Sbjct: 189 Q 189
>gi|134026264|gb|AAI36135.1| ELAV (embryonic lethal, abnormal vision)-like 3 (Hu antigen C)
[Xenopus (Silurana) tropicalis]
Length = 342
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 80/178 (44%), Gaps = 11/178 (6%)
Query: 84 SSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRG 142
S +N + SKT L+ +P T E+ ++LF G + +L ++ G
Sbjct: 18 GSVGILNGTNGAADDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLG 77
Query: 143 LAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANL 202
FV P++A A+N L + + +T+KV+YA+ + NL++++L
Sbjct: 78 YGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSSAS---------IRDANLYVSSL 128
Query: 203 SFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
K++ + F S+ ++++ ++ S G GF+ F + AE AI G+
Sbjct: 129 PKTMNQKEMEQLF-SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 185
>gi|207080284|ref|NP_001128867.1| DKFZP459N111 protein [Pongo abelii]
gi|390458025|ref|XP_003732040.1| PREDICTED: ELAV-like protein 2 [Callithrix jacchus]
gi|402897269|ref|XP_003911691.1| PREDICTED: ELAV-like protein 2 isoform 5 [Papio anubis]
gi|403272644|ref|XP_003928162.1| PREDICTED: ELAV-like protein 2 isoform 4 [Saimiri boliviensis
boliviensis]
gi|426361469|ref|XP_004047933.1| PREDICTED: ELAV-like protein 2 isoform 5 [Gorilla gorilla gorilla]
gi|55731642|emb|CAH92527.1| hypothetical protein [Pongo abelii]
Length = 389
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 84/181 (46%), Gaps = 13/181 (7%)
Query: 81 VDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNR 139
++++ ++ V++ E+ SKT L+ +P T E++++LF G + +L +
Sbjct: 50 INNNCSSPVDSGNTED--SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQ 107
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI 199
+ G FV P +A A+N L + +T+KV+YA+ + NL++
Sbjct: 108 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYV 158
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ L K+L + F G ++++ ++ S G GF+ F + AE AI G
Sbjct: 159 SGLPKTMTQKELEQLFSQYG-RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 217
Query: 260 K 260
+
Sbjct: 218 Q 218
>gi|22507391|ref|NP_683717.1| polyadenylate-binding protein 4 isoform 2 [Mus musculus]
gi|16307591|gb|AAH10345.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
Length = 615
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 81/166 (48%), Gaps = 14/166 (8%)
Query: 116 DIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175
+++ LF Q G L +++ S +++G FV+ ++A A+ + E G+ + V
Sbjct: 206 NLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGR 265
Query: 176 AKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSAE 226
A+ K K F ++ + + + NL+I NL + LR F G + SA+
Sbjct: 266 AQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRREFSPFG-SITSAK 324
Query: 227 VIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIALS 270
V+ D RS G+GFV F S + A A++ G+++ L +AL+
Sbjct: 325 VMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
>gi|41152034|ref|NP_958453.1| polyadenylate-binding protein 4 [Danio rerio]
gi|31419252|gb|AAH53126.1| Poly(A) binding protein, cytoplasmic 4 (inducible form) [Danio
rerio]
Length = 637
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 83/165 (50%), Gaps = 14/165 (8%)
Query: 117 IRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176
++ LF+++G L +++ ++RG FV+ ++A A+ + E G+T+ V A
Sbjct: 208 LKELFDKYGKTLSVKVMTDPTGKSRGFGFVSYEKHEDANKAVEEMNGTELNGKTVFVGRA 267
Query: 177 KIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSAEV 227
+ K K F ++ + + + NL+I NL + LR+ F G + SA+V
Sbjct: 268 QKKMERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSAKV 326
Query: 228 IFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIALS 270
+ + RS G+GFV F S + A A++ G+++ L +AL+
Sbjct: 327 MLEEG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 369
>gi|47225636|emb|CAG07979.1| unnamed protein product [Tetraodon nigroviridis]
Length = 382
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 79/189 (41%), Gaps = 11/189 (5%)
Query: 73 SATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIEL 132
T P +S + + SKT L+ +P T E+ R+LF G + +L
Sbjct: 17 GTTANGPTTNSHGCPSPMQTGPTNDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKL 76
Query: 133 SMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKP 191
++ G FV P +A A+N L + +T+KV+YA+ +
Sbjct: 77 VRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS--------- 127
Query: 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAE 251
NL+++ L K+L + F S+ ++++ ++ S G GF+ F + AE
Sbjct: 128 IRDANLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGGSRGVGFIRFDKRVEAE 186
Query: 252 TAISAFQGK 260
AI G+
Sbjct: 187 EAIKGLNGQ 195
>gi|13096978|gb|AAH03283.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
Length = 660
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 82/166 (49%), Gaps = 14/166 (8%)
Query: 116 DIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175
+++ LF Q G L +++ S +++G FV+ ++A A+ + E G+ + V
Sbjct: 206 NLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGR 265
Query: 176 AKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSAE 226
A+ K K F ++ + + + NL+I NL + LR+ F G + SA+
Sbjct: 266 AQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSAK 324
Query: 227 VIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIALS 270
V+ D RS G+GFV F S + A A++ G+++ L +AL+
Sbjct: 325 VMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
>gi|442555271|ref|YP_007365096.1| RNA recognition domain-containing protein [Lawsonia intracellularis
N343]
gi|441492718|gb|AGC49412.1| RNA recognition domain-containing protein [Lawsonia intracellularis
N343]
Length = 88
Score = 61.6 bits (148), Expect = 4e-07, Method: Composition-based stats.
Identities = 35/85 (41%), Positives = 51/85 (60%), Gaps = 7/85 (8%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIEL-SMHSKNRNRGLAFVTMGSPDEATAALNNLESYE 165
N+PW++T E +++LF ++G V+ ++L S R RG FV M P ATAA+ L++
Sbjct: 9 NLPWSATEEQVQSLFSEYGHVMAVKLVSDRETGRARGFGFVEMEEPG-ATAAIEALDNAN 67
Query: 166 FEGRTLKVNYAKIKKKNPFPPVQPK 190
F GRTL+VN AK P P P+
Sbjct: 68 FGGRTLRVNEAK-----PRAPRAPR 87
>gi|71896483|ref|NP_001025497.1| ELAV-like protein 3 [Xenopus (Silurana) tropicalis]
gi|123913100|sp|Q28FX0.1|ELAV3_XENTR RecName: Full=ELAV-like protein 3; AltName: Full=Protein ElrC
gi|89266725|emb|CAJ83874.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu
antigen C) [Xenopus (Silurana) tropicalis]
Length = 343
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 77/178 (43%), Gaps = 10/178 (5%)
Query: 84 SSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRG 142
S +N + SKT L+ +P T E+ ++LF G + +L ++ G
Sbjct: 18 GSVGILNGTNGAADDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLG 77
Query: 143 LAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANL 202
FV P++A A+N L + + +T+KV+YA+ + NL++++L
Sbjct: 78 YGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSSAS---------IRDANLYVSSL 128
Query: 203 SFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
K++ + F G + S ++ S G GF+ F + AE AI G+
Sbjct: 129 PKTMNQKEMEQLFSQYGRIITSRILVDQVTGSVSRGVGFIRFDKRIEAEEAIKGLNGQ 186
>gi|256075085|ref|XP_002573851.1| polyadenylate binding protein [Schistosoma mansoni]
gi|360044948|emb|CCD82496.1| putative polyadenylate binding protein [Schistosoma mansoni]
Length = 726
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 80/180 (44%), Gaps = 14/180 (7%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLE 162
L +N P + +E ++ +F + G + + S+ +++G FV PD A A+ +
Sbjct: 194 LYIKNFPPETDNEKLKEMFNEFGEIKSACVMKDSEGKSKGFGFVCFLDPDHAENAVKTMH 253
Query: 163 SYEFEGRTLKVNYAKIKK----------KNPFPPVQPKPFATFNLFIANLSFEARAKDLR 212
E EGR L A+ K+ + Q NL++ NL K L
Sbjct: 254 GKEIEGRALYCARAQRKEERQEELKQRLEKQRAERQSSYMLNVNLYVKNLDDNIDDKRLE 313
Query: 213 EFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIALS 270
E F G + SA+V+ D RS G+GFV F + + A A++ G +I L +AL+
Sbjct: 314 EAFSVHG-SITSAKVM-KDANNRSKGFGFVCFANPEQAARAVTDMNGTIIGSKPLYVALA 371
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 70/152 (46%), Gaps = 10/152 (6%)
Query: 117 IRALFEQHGTVLDIELSMHSKNRNR-GLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175
++A F + G VL + R+ G +V P A AL L GR +++ +
Sbjct: 29 LQAKFSEIGPVLSARVCRDLATRHSLGYGYVNFEDPKHAEQALEVLNYESLMGRPIRIMW 88
Query: 176 AKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRR 235
++ ++P + N+FI NL K+L + F G ++S +++ +N +
Sbjct: 89 SQ---RDP----SLRKSGKGNIFIKNLDKSIEQKELYDTFSFFGR-ILSCKIVMDENGQ- 139
Query: 236 SAGYGFVSFKSKKVAETAISAFQGKVIMCLVI 267
S GYGFV F+ ++ AE AI +I V+
Sbjct: 140 SKGYGFVHFEKEECAERAIEKINNMIIRDRVV 171
>gi|195387610|ref|XP_002052487.1| GJ21323 [Drosophila virilis]
gi|194148944|gb|EDW64642.1| GJ21323 [Drosophila virilis]
Length = 421
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 71/157 (45%), Gaps = 8/157 (5%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSPDEA 154
EE + +L + W +T E++ F + G ++D + + + R+RG FVT P
Sbjct: 2 EEDERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPANV 61
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
L + + +GRT+ K NP +PK + +F+ L DLR F
Sbjct: 62 NHVLQS-GPHTLDGRTIDP-----KPCNPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTF 115
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAE 251
F G V +++ ++S G+GF+SF+ + E
Sbjct: 116 FGRYG-KVTEVVIMYDQEKKKSRGFGFLSFEEESSVE 151
>gi|359441487|ref|ZP_09231384.1| hypothetical protein P20429_1749 [Pseudoalteromonas sp. BSi20429]
gi|392536291|ref|ZP_10283428.1| hypothetical protein ParcA3_19972 [Pseudoalteromonas arctica A
37-1-2]
gi|358036667|dbj|GAA67633.1| hypothetical protein P20429_1749 [Pseudoalteromonas sp. BSi20429]
Length = 159
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 61/106 (57%), Gaps = 5/106 (4%)
Query: 80 FVDSSSAAAVNTEQREEEYSKTR-LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKN 138
+ + + AA++++ EE KT+ L N+P+ + +RALFE+ G V ++ L + KN
Sbjct: 43 LIGAIAIAAMSSDVTEEAEVKTKTLYVGNLPYRANEGVVRALFEEQGKVFNVRL-LKDKN 101
Query: 139 --RNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKN 182
+ RG FV M D A A+ NL EF+ RTLKV AK K+++
Sbjct: 102 TGKRRGFGFVEMAQAD-ADNAIANLNDSEFQQRTLKVREAKQKQED 146
>gi|440910150|gb|ELR59976.1| ELAV-like protein 3, partial [Bos grunniens mutus]
Length = 373
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 78/166 (46%), Gaps = 17/166 (10%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR----NRGLAFVTMGSPDEA 154
SKT L+ +P T ++ ++LF G++ DIE +++ + G FV P++A
Sbjct: 36 SKTNLIVNYLPQNMTQDEFKSLF---GSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDA 92
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
A+N L + + +T+KV+YA+ + NL+++ L K++ +
Sbjct: 93 DKAINTLNGLKLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMSQKEMEQL 143
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
F G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 144 FSQYG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 188
>gi|297664977|ref|XP_002810889.1| PREDICTED: ELAV-like protein 4 isoform 2 [Pongo abelii]
Length = 380
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 73/163 (44%), Gaps = 11/163 (6%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T E+ R+LF G + +L ++ G FV P +A A
Sbjct: 44 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 103
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + +T+KV+YA+ + NL+++ L K+L + F S
Sbjct: 104 INTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQKELEQLF-S 153
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
+ ++++ ++ S G GF+ F + AE AI G+
Sbjct: 154 QYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 196
>gi|301763026|ref|XP_002916933.1| PREDICTED: ELAV-like protein 2-like [Ailuropoda melanoleuca]
Length = 427
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 84/181 (46%), Gaps = 13/181 (7%)
Query: 81 VDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNR 139
++++ ++ V++ E+ SKT L+ +P T E++++LF G + +L +
Sbjct: 89 INNNCSSPVDSGNTED--SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQ 146
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI 199
+ G FV P +A A+N L + +T+KV+YA+ + NL++
Sbjct: 147 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYV 197
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ L K+L + F G ++++ ++ S G GF+ F + AE AI G
Sbjct: 198 SGLPKTMTQKELEQLFSQYG-RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 256
Query: 260 K 260
+
Sbjct: 257 Q 257
>gi|148698435|gb|EDL30382.1| mCG5546, isoform CRA_a [Mus musculus]
Length = 632
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 81/166 (48%), Gaps = 14/166 (8%)
Query: 116 DIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175
+++ LF Q G L +++ S +++G FV+ ++A A+ + E G+ + V
Sbjct: 223 NLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGR 282
Query: 176 AKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSAE 226
A+ K K F ++ + + + NL+I NL + LR F G + SA+
Sbjct: 283 AQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRREFSPFG-SITSAK 341
Query: 227 VIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIALS 270
V+ D RS G+GFV F S + A A++ G+++ L +AL+
Sbjct: 342 VMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 385
>gi|432856226|ref|XP_004068415.1| PREDICTED: ELAV-like protein 4-like [Oryzias latipes]
Length = 439
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 72/163 (44%), Gaps = 11/163 (6%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T E+ R+LF G + +L ++ G FV P +A A
Sbjct: 116 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 175
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + +T+KV+YA+ + NL+++ L K+L + F
Sbjct: 176 INTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQKELEQLFSQ 226
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 227 YG-RIITSRILVDQVTGGSRGVGFIRFDKRIEAEEAIKGLNGQ 268
>gi|74189486|dbj|BAE22747.1| unnamed protein product [Mus musculus]
Length = 590
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 76/156 (48%), Gaps = 12/156 (7%)
Query: 116 DIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175
+++ LF Q G L +++ S +++G FV+ ++A A+ + E G+ + V
Sbjct: 135 NLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGR 194
Query: 176 AKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSAE 226
A+ K K F ++ + + + NL+I NL + LR F G + SA+
Sbjct: 195 AQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRREFSPFG-SITSAK 253
Query: 227 VIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
V+ D RS G+GFV F S + A A++ G+++
Sbjct: 254 VMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIV 287
>gi|62088168|dbj|BAD92531.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B) variant [Homo sapiens]
Length = 367
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 84/181 (46%), Gaps = 13/181 (7%)
Query: 81 VDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNR 139
++++ ++ V++ E+ SKT L+ +P T E++++LF G + +L +
Sbjct: 29 INNNCSSPVDSGNTED--SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQ 86
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI 199
+ G FV P +A A+N L + +T+KV+YA+ + NL++
Sbjct: 87 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYV 137
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ L K+L + F G ++++ ++ S G GF+ F + AE AI G
Sbjct: 138 SGLPKTMTQKELEQLFSQYGR-IITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 196
Query: 260 K 260
+
Sbjct: 197 Q 197
>gi|50305507|ref|XP_452713.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641846|emb|CAH01564.1| KLLA0C11495p [Kluyveromyces lactis]
Length = 445
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 88/202 (43%), Gaps = 21/202 (10%)
Query: 87 AAVNTEQREEEYSKTRLVAQ-------NVPWTSTHEDIRALFEQHGTVLDIELSMHSK-- 137
A + E+ E + KT L + + W+ E ++ FE G V+ + M+ +
Sbjct: 175 ADDDEEKSESKKPKTELAGEPATIFVGRLSWSIDDEWLKTEFEPIGGVISARV-MYERGT 233
Query: 138 NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK--------KKNPFPPVQP 189
+R+RG +V A A+ + E +GR + + + K + F V
Sbjct: 234 DRSRGYGYVDFEDKSYAEKAIKEMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPS 293
Query: 190 KPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKV 249
+P T LF+ NLSFEA +L E F G ++VS + H + G+G+V + S +
Sbjct: 294 EPSDT--LFLGNLSFEADRDNLYEIFGKYG-EIVSVRIPTHPETEQPKGFGYVQYGSIED 350
Query: 250 AETAISAFQGKVIMCLVIALSY 271
A A QG+ I + L Y
Sbjct: 351 ATKAFEGLQGEYINNRPVRLDY 372
>gi|281347138|gb|EFB22722.1| hypothetical protein PANDA_010481 [Ailuropoda melanoleuca]
Length = 377
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 72/163 (44%), Gaps = 11/163 (6%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T E+ R+LF G + +L ++ G FV P +A A
Sbjct: 41 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 100
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + +T+KV+YA+ + NL+++ L K+L + F
Sbjct: 101 INTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQKELEQLFSQ 151
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 152 YGR-IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 193
>gi|221316765|ref|NP_068771.2| ELAV-like protein 4 isoform 1 [Homo sapiens]
gi|114556466|ref|XP_001134946.1| PREDICTED: ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 isoform 2 [Pan troglodytes]
gi|332219811|ref|XP_003259051.1| PREDICTED: ELAV-like protein 4 isoform 6 [Nomascus leucogenys]
gi|395855045|ref|XP_003799982.1| PREDICTED: ELAV-like protein 4 isoform 5 [Otolemur garnettii]
gi|397518912|ref|XP_003829619.1| PREDICTED: ELAV-like protein 4 isoform 6 [Pan paniscus]
gi|402854513|ref|XP_003891912.1| PREDICTED: ELAV-like protein 4 isoform 6 [Papio anubis]
gi|426329583|ref|XP_004025818.1| PREDICTED: ELAV-like protein 4 isoform 6 [Gorilla gorilla gorilla]
gi|223590202|sp|P26378.2|ELAV4_HUMAN RecName: Full=ELAV-like protein 4; AltName: Full=Hu-antigen D;
Short=HuD; AltName: Full=Paraneoplastic
encephalomyelitis antigen HuD
gi|380810344|gb|AFE77047.1| ELAV-like protein 4 isoform 1 [Macaca mulatta]
Length = 380
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 73/163 (44%), Gaps = 11/163 (6%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T E+ R+LF G + +L ++ G FV P +A A
Sbjct: 44 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 103
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + +T+KV+YA+ + NL+++ L K+L + F S
Sbjct: 104 INTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQKELEQLF-S 153
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
+ ++++ ++ S G GF+ F + AE AI G+
Sbjct: 154 QYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 196
>gi|170579093|ref|XP_001894673.1| polyadenylate-binding protein 1 [Brugia malayi]
gi|158598601|gb|EDP36463.1| polyadenylate-binding protein 1, putative [Brugia malayi]
Length = 655
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 80/170 (47%), Gaps = 17/170 (10%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E + LF + G + + + + +++G FV +P++A A+ + YE G K+
Sbjct: 213 EALEKLFSKFGKITSAAVMVDADGKSKGFGFVAFENPEDAEKAVTEMHEYELPGTERKLY 272
Query: 175 YAKIKKKNPFPP-----------VQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVV 223
+ +KKN + + + NL++ NL L++ F + G +
Sbjct: 273 VCRAQKKNERSAELKRRYEQQKVERMQRYQGVNLYVKNLDDTVNDDILKQNFEAYG-KIT 331
Query: 224 SAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC---LVIALS 270
SA+V+ DN RS G+GFV F+ A A++ GK +MC L +AL+
Sbjct: 332 SAKVMCDDNG-RSKGFGFVCFEKPDEATKAVTEMNGK-MMCTKPLYVALA 379
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 69/143 (48%), Gaps = 10/143 (6%)
Query: 121 FEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179
F G VL I + + R+ G A+V P +A AL+ + G+ +++ +++
Sbjct: 38 FSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALDTMNFDMMYGKPIRIMWSQ-- 95
Query: 180 KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
++P + N+FI NL K + + F G +++S +V +D S GY
Sbjct: 96 -RDP----SMRRSGAGNIFIKNLDKSIDNKAIYDTFSMFG-NILSCKVA-NDEESNSKGY 148
Query: 240 GFVSFKSKKVAETAISAFQGKVI 262
GFV F++++ A+ AI G ++
Sbjct: 149 GFVHFETEESAQKAIEKVNGMLL 171
Score = 38.1 bits (87), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 40/88 (45%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPD 152
+R + Y L +N+ T + ++ FE +G + ++ R++G FV PD
Sbjct: 296 ERMQRYQGVNLYVKNLDDTVNDDILKQNFEAYGKITSAKVMCDDNGRSKGFGFVCFEKPD 355
Query: 153 EATAALNNLESYEFEGRTLKVNYAKIKK 180
EAT A+ + + L V A+ K+
Sbjct: 356 EATKAVTEMNGKMMCTKPLYVALAQRKE 383
>gi|134083605|emb|CAL00520.1| unnamed protein product [Aspergillus niger]
Length = 381
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 77/165 (46%), Gaps = 5/165 (3%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEF 166
NV + T ED++ E++G V + L + ++ ++G +V S D A A++ L F
Sbjct: 202 NVFYDVTREDLKKAMEKYGVVEKVVLVLDNRGISKGYGYVQFDSIDAAQRAVDALNMRLF 261
Query: 167 EGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAE 226
EGR + V +A+ N + Q T L+I NL FE +DL E F + +VV
Sbjct: 262 EGRRVTVQFAQ---NNVYHRRQLN-APTRTLYIGNLPFEMTDRDLNELF-KDVQNVVDIR 316
Query: 227 VIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271
V ++ G+ F S A+ A++ + K+ + L Y
Sbjct: 317 VAVDRRTGQARGFAHAEFVSTSSAKAAMAILENKLPYGRRLRLDY 361
Score = 40.4 bits (93), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 7/81 (8%)
Query: 187 VQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKS 246
+Q P +FI N+ ++ +DL++ E + VV V+ DN S GYG+V F S
Sbjct: 188 LQEPPTPKETVFIGNVFYDVTREDLKKAM--EKYGVVEKVVLVLDNRGISKGYGYVQFDS 245
Query: 247 KKVAETAISA-----FQGKVI 262
A+ A+ A F+G+ +
Sbjct: 246 IDAAQRAVDALNMRLFEGRRV 266
Score = 38.5 bits (88), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYE 165
N+P+ T D+ LF+ V+DI +++ + + RG A S A AA+ LE+
Sbjct: 292 NLPFEMTDRDLNELFKDVQNVVDIRVAVDRRTGQARGFAHAEFVSTSSAKAAMAILENKL 351
Query: 166 FEGRTLKVNYAK 177
GR L+++Y+K
Sbjct: 352 PYGRRLRLDYSK 363
>gi|440909067|gb|ELR59018.1| ELAV-like protein 2 [Bos grunniens mutus]
Length = 388
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 84/181 (46%), Gaps = 13/181 (7%)
Query: 81 VDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNR 139
++++ ++ V++ E+ SKT L+ +P T E++++LF G + +L +
Sbjct: 49 INNNCSSPVDSGNTED--SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQ 106
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI 199
+ G FV P +A A+N L + +T+KV+YA+ + NL++
Sbjct: 107 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYV 157
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ L K+L + F G ++++ ++ S G GF+ F + AE AI G
Sbjct: 158 SGLPKTMTQKELEQLFSQYG-RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 216
Query: 260 K 260
+
Sbjct: 217 Q 217
>gi|359455069|ref|ZP_09244319.1| hypothetical protein P20495_3083 [Pseudoalteromonas sp. BSi20495]
gi|414072394|ref|ZP_11408337.1| RNA-binding protein [Pseudoalteromonas sp. Bsw20308]
gi|358047907|dbj|GAA80568.1| hypothetical protein P20495_3083 [Pseudoalteromonas sp. BSi20495]
gi|410805154|gb|EKS11177.1| RNA-binding protein [Pseudoalteromonas sp. Bsw20308]
Length = 159
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 71/142 (50%), Gaps = 15/142 (10%)
Query: 54 HAYTFPITPKKVSPFV--FHFSATTQDP--------FVDSSSAAAVNTEQREEEYSKTR- 102
A+ F + V V F ++ DP V + AA++++ EE KT+
Sbjct: 7 KAFIFSVILAVVGFVVVKFALASLALDPALLFGVGLLVGALVIAAMSSDVTEEAEVKTKT 66
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKN--RNRGLAFVTMGSPDEATAALNN 160
L N+P+ + +RALFE+ G V ++ L + KN + RG FV M D A A+ N
Sbjct: 67 LYVGNLPYRANEGVVRALFEEQGKVFNVRL-LKDKNTGKRRGFGFVEMAQAD-ADNAIAN 124
Query: 161 LESYEFEGRTLKVNYAKIKKKN 182
L EF+ RTLKV AK K+++
Sbjct: 125 LNDSEFQQRTLKVREAKQKQED 146
>gi|297632376|ref|NP_001172077.1| ELAV-like protein 1 [Oryctolagus cuniculus]
gi|296399062|gb|ADH10369.1| embryonic lethal abnormal vision-like 1 protein [Oryctolagus
cuniculus]
Length = 326
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 76/169 (44%), Gaps = 11/169 (6%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGS 150
E ++ +T L+ +P T E++R+LF G V +L + G FV +
Sbjct: 11 EDCRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVT 70
Query: 151 PDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKD 210
+A A+N L + +T+KV+YA+ P V NL+I+ L KD
Sbjct: 71 AKDAEKAINTLNGLRLQSKTIKVSYAR-----PSSEV----IKDANLYISGLPRTMTQKD 121
Query: 211 LREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ + F G ++++ V+ S G F+ F + AE AI++F G
Sbjct: 122 VEDMFSRFG-RIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 196 NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
NL + L ++LR F S G +V SA++I S GYGFV++ + K AE AI+
Sbjct: 21 NLIVNYLPQNMTQEELRSLFSSIG-EVESAKLIRDKVAGHSLGYGFVNYVTAKDAEKAIN 79
Query: 256 AFQGKVIMCLVIALSY 271
G + I +SY
Sbjct: 80 TLNGLRLQSKTIKVSY 95
>gi|126334000|ref|XP_001364864.1| PREDICTED: ELAV-like protein 2-like isoform 1 [Monodelphis
domestica]
Length = 360
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 84/181 (46%), Gaps = 13/181 (7%)
Query: 81 VDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNR 139
++++ ++ V++ E+ SKT L+ +P T E++++LF G + +L +
Sbjct: 21 INNNCSSPVDSGNTED--SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQ 78
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI 199
+ G FV P +A A+N L + +T+KV+YA+ + NL++
Sbjct: 79 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYV 129
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ L K+L + F G ++++ ++ S G GF+ F + AE AI G
Sbjct: 130 SGLPKTMTQKELEQLFSQYGR-IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Query: 260 K 260
+
Sbjct: 189 Q 189
>gi|84662764|ref|NP_001033787.1| ELAV-like protein 4 isoform b [Mus musculus]
gi|291398924|ref|XP_002715150.1| PREDICTED: ELAV-like 4-like isoform 1 [Oryctolagus cuniculus]
gi|426215488|ref|XP_004002004.1| PREDICTED: ELAV-like protein 4 isoform 4 [Ovis aries]
gi|26347767|dbj|BAC37532.1| unnamed protein product [Mus musculus]
gi|112180554|gb|AAH52451.2| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu
antigen D) [Mus musculus]
Length = 380
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 73/163 (44%), Gaps = 11/163 (6%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T E+ R+LF G + +L ++ G FV P +A A
Sbjct: 44 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 103
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + +T+KV+YA+ + NL+++ L K+L + F S
Sbjct: 104 INTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQKELEQLF-S 153
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
+ ++++ ++ S G GF+ F + AE AI G+
Sbjct: 154 QYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 196
>gi|448111784|ref|XP_004201926.1| Piso0_001392 [Millerozyma farinosa CBS 7064]
gi|359464915|emb|CCE88620.1| Piso0_001392 [Millerozyma farinosa CBS 7064]
Length = 422
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 93/192 (48%), Gaps = 9/192 (4%)
Query: 81 VDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR- 139
++SS A+AV+ + E S T L + + + + +R LF G V I+ +++ KNR
Sbjct: 55 MESSPASAVDGGR---EISNTILYVGGLHKSVSEDVLRDLFSSCGGVKSIK-TLNDKNRP 110
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI 199
AFV + D A AL L +K+N+A + Q +PF FN+F+
Sbjct: 111 GFSYAFVEFENTDSAELALRTLNGRMVNNSVIKINWA-YQSSAVSTASQQEPF--FNIFV 167
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+LS E + L + F S+ + A V++ RS GYGFVSF ++ AE A+ G
Sbjct: 168 GDLSPEVDDESLHKAF-SKFESLRQAHVMWDMQTSRSRGYGFVSFGNQVDAELALQTMNG 226
Query: 260 KVIMCLVIALSY 271
+ I I ++
Sbjct: 227 EWIGGRAIRCNW 238
>gi|332030569|gb|EGI70257.1| Polyadenylate-binding protein 1 [Acromyrmex echinatior]
Length = 657
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 88/182 (48%), Gaps = 15/182 (8%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N T + ++ +FE++GT+ ++ + ++RG FV P+ A A+ +
Sbjct: 214 TNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPNSAEQAVLD 273
Query: 161 LESYEF-EGRTLKVNYAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKD 210
L E EG+ + V A+ K K F ++ + + NL++ NL +
Sbjct: 274 LNGKEIAEGKCMYVGRAQKKAERQQELKRKFEQLKIERLNRYQGVNLYVKNLDDTIDDER 333
Query: 211 LREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIA 268
LR+ F G + SA+V+ + RS G+GFV F + A A++ G+++ L +A
Sbjct: 334 LRKEFTPFGT-ITSAKVMMEEG--RSKGFGFVCFSQPEEATKAVTEMNGRIVGSKPLYVA 390
Query: 269 LS 270
L+
Sbjct: 391 LA 392
>gi|81914424|sp|Q8CH84.1|ELAV2_RAT RecName: Full=ELAV-like protein 2; AltName: Full=Hu-antigen B;
Short=HuB
gi|27374986|dbj|BAC53775.1| RNA binding protein HuB [Rattus norvegicus]
Length = 359
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 84/181 (46%), Gaps = 13/181 (7%)
Query: 81 VDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNR 139
V+++ ++ V++ E+ SKT L+ +P T E++++LF G + +L +
Sbjct: 21 VNNNCSSPVDSGNTED--SKTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQ 78
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI 199
+ G FV P +A A+N L + +T+KV+YA+ + NL++
Sbjct: 79 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYV 129
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ L K+L + F G ++++ ++ S G GF+ F + AE AI G
Sbjct: 130 SGLPKTMTQKELEQLFSQYGR-IITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Query: 260 K 260
+
Sbjct: 189 Q 189
>gi|354484923|ref|XP_003504635.1| PREDICTED: polyadenylate-binding protein 1-like [Cricetulus
griseus]
Length = 672
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 92/195 (47%), Gaps = 19/195 (9%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHED-----IRALFEQHGTVLDIELSMHSKNRNRGLAFV 146
++RE E L NV + H D ++ LF Q G + +++ S ++RG FV
Sbjct: 240 QKREAELGARALGFTNVYVKNLHMDMDEQGLQDLFSQFGKMQSVKVMRDSNGQSRGFGFV 299
Query: 147 TMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK------KNPFPPVQPK---PFATFNL 197
+EA A++++ E G+ L V A+ + K F V+ + + NL
Sbjct: 300 NFEKHEEAQKAVDHMNGKEVRGQLLYVGRAQKRAERQSELKRRFEQVKQERQNRYQGVNL 359
Query: 198 FIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAF 257
++ NL + L+E F + G + SA+V+ + S G+GFV F S + A A++
Sbjct: 360 YVKNLDDSINDERLKEVFSAYGV-ITSAKVMTESS--HSKGFGFVCFSSPEEATKAVTEM 416
Query: 258 QGKVIMC--LVIALS 270
G+++ L +AL+
Sbjct: 417 NGRIVGTKPLYVALA 431
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 74/150 (49%), Gaps = 7/150 (4%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G++L ++ +++++ +RG FV + + A A+N + R +
Sbjct: 174 DNKALYDTFSTFGSILSSKV-VYNEHGSRGFGFVHFETHEAAQKAINTMNGMLLNDRKVF 232
Query: 173 VNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDN 232
V + K ++K + + N+++ NL + + L++ F G + + + D+
Sbjct: 233 VGHFKSRQKRE-AELGARALGFTNVYVKNLHMDMDEQGLQDLFSQFG--KMQSVKVMRDS 289
Query: 233 PRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
+S G+GFV+F+ + A+ A+ GK +
Sbjct: 290 NGQSRGFGFVNFEKHEEAQKAVDHMNGKEV 319
>gi|335291035|ref|XP_003127861.2| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Sus scrofa]
Length = 644
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 86/181 (47%), Gaps = 14/181 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N E+++ LF Q G L +++ +++G FV+ ++A A+
Sbjct: 191 TNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEE 250
Query: 161 LESYEFEGRTLKVNYAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDL 211
+ E G+ + V A+ K K F ++ + + + NL+I NL + L
Sbjct: 251 MNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 310
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIAL 269
R+ F G + SA+V+ D RS G+GFV F S + A A++ G+++ L +AL
Sbjct: 311 RKEFSPFG-SITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVAL 367
Query: 270 S 270
+
Sbjct: 368 A 368
Score = 43.9 bits (102), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 74/156 (47%), Gaps = 9/156 (5%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G +L ++ + +N ++G AFV + + A A+ + R +
Sbjct: 111 DNKALYDTFSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVF 169
Query: 173 VNYAKIKKKNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD 231
V K +K+ + K F N++I N E ++L+E F S+ +S +V+ D
Sbjct: 170 VGRFKSRKEREAELGAKAKEFT--NVYIKNFGEEVDDENLKELF-SQFGKTLSVKVM-RD 225
Query: 232 NPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVI 267
+S G+GFVS++ + A A+ GK I VI
Sbjct: 226 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVI 261
>gi|149016335|gb|EDL75581.1| nucleolin, isoform CRA_e [Rattus norvegicus]
Length = 505
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 90/173 (52%), Gaps = 13/173 (7%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAAL 158
SKT LV N+ +++T E ++ +FE+ T + + + H K++ G AF+ S ++A AL
Sbjct: 280 SKT-LVLSNLSYSATEETLQEVFEK-ATFIKVPQNPHGKSK--GYAFIEFASFEDAKEAL 335
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISE 218
N+ E EGRT+++ +++ P + +P T LF+ LS + + L+E F E
Sbjct: 336 NSCNKMEIEGRTIRL---ELQGPRGSPNARSQPSKT--LFVKGLSEDTTEETLKESF--E 388
Query: 219 GWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271
G V A ++ S G+GFV F S++ A+ A A + I + L +
Sbjct: 389 G--SVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 439
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 84/171 (49%), Gaps = 15/171 (8%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKN-RNRGLAFVTMGSPDEATAALNNL 161
L+A+N+ + T ++++ +FE +E+ + S++ R++G+A++ S +A L
Sbjct: 191 LLAKNLSFNITEDELKEVFEDA-----VEIRLVSQDGRSKGIAYIEFKSEADAEKNLEEK 245
Query: 162 ESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA--TFNLFIANLSFEARAKDLREFFISEG 219
+ E +GR++ + Y K + + ++ + L ++NLS+ A + L+E F
Sbjct: 246 QGAEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKAT 305
Query: 220 WDVVSAEVIFHDNPR-RSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIAL 269
+ + NP +S GY F+ F S + A+ A+++ I I L
Sbjct: 306 F------IKVPQNPHGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRL 350
Score = 40.4 bits (93), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 55/132 (41%), Gaps = 14/132 (10%)
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI 199
NR +V S ++ AL E G LKV +IK + P K A L
Sbjct: 142 NRKFGYVDFESAEDLEKAL------ELTG--LKVFGNEIKLEKPKGRDSKKVRAARTLLA 193
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
NLSF +L+E F D V ++ D RS G ++ FKS+ AE + QG
Sbjct: 194 KNLSFNITEDELKEVF----EDAVEIRLVSQDG--RSKGIAYIEFKSEADAEKNLEEKQG 247
Query: 260 KVIMCLVIALSY 271
I ++L Y
Sbjct: 248 AEIDGRSVSLYY 259
>gi|390465926|ref|XP_003733492.1| PREDICTED: ELAV-like protein 4 isoform 5 [Callithrix jacchus]
gi|403258123|ref|XP_003921628.1| PREDICTED: ELAV-like protein 4 isoform 4 [Saimiri boliviensis
boliviensis]
Length = 380
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 73/163 (44%), Gaps = 11/163 (6%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T E+ R+LF G + +L ++ G FV P +A A
Sbjct: 44 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 103
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + +T+KV+YA+ + NL+++ L K+L + F S
Sbjct: 104 INTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQKELEQLF-S 153
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
+ ++++ ++ S G GF+ F + AE AI G+
Sbjct: 154 QYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 196
>gi|452839557|gb|EME41496.1| hypothetical protein DOTSEDRAFT_73793 [Dothistroma septosporum
NZE10]
Length = 327
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 81/178 (45%), Gaps = 17/178 (9%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAAL 158
S TRL N+P +T D+ F HGT +E+ + + G F+ +A +
Sbjct: 7 SNTRLYLGNLPRNATKADVENHFNTHGTGEIMEIKLMN-----GFGFIEYKDAMDARDVV 61
Query: 159 NNLESYEFEGRTLKVNYAKI--KKKNPF---PPVQPKPFATFN-LFIANLSFEARAKDLR 212
EF G L V +A+ + + F P + P+P T + + I L FE +DL+
Sbjct: 62 PAFHGSEFMGERLVVQFARGSNRPREGFEHQPRMAPRPRRTVHRMTITGLPFETSWQDLK 121
Query: 213 EFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAI-----SAFQGKVIMCL 265
+F G DVV +EV +P G G+V +++ TA+ S F+G + C+
Sbjct: 122 DFARQSGLDVVYSEVNRERDP-SGTGKGYVEYETAADLATAVEKLDNSEFKGSNVRCI 178
>gi|327263683|ref|XP_003216647.1| PREDICTED: ELAV-like protein 2-like isoform 1 [Anolis carolinensis]
Length = 397
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 84/181 (46%), Gaps = 13/181 (7%)
Query: 81 VDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNR 139
++++ ++ V++ E+ SKT L+ +P T E++++LF G + +L +
Sbjct: 59 INNNCSSPVDSGNTED--SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQ 116
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI 199
+ G FV P +A A+N L + +T+KV+YA+ + NL++
Sbjct: 117 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYV 167
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ L K+L + F G ++++ ++ S G GF+ F + AE AI G
Sbjct: 168 SGLPKTMTQKELEQLFSQYG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 226
Query: 260 K 260
+
Sbjct: 227 Q 227
>gi|159462882|ref|XP_001689671.1| polyadenylate-binding protein RB47 [Chlamydomonas reinhardtii]
gi|158283659|gb|EDP09409.1| polyadenylate-binding protein RB47 [Chlamydomonas reinhardtii]
Length = 636
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 77/181 (42%), Gaps = 13/181 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N+P +++ + +HG + + K ++G F+ + A +
Sbjct: 201 TNVFVKNLPADIGDDELGKMATEHGEITSAVVMKDDKGGSKGFGFINFKDAESAAKCVEY 260
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPVQPK---------PFATFNLFIANLSFEARAKDL 211
L E G+TL A+ K + Q + NL++ NLS E L
Sbjct: 261 LNEREMSGKTLYAGRAQKKTEREAMLRQKAEESKQERYLKYQGMNLYVKNLSDEVDDDAL 320
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIAL 269
RE F + G +++ + D +S G+GFV F S A A++ GK++ L +AL
Sbjct: 321 RELFANSG--TITSCKVMKDGSGKSKGFGFVCFTSHDEATRAVTEMNGKMVKGKPLYVAL 378
Query: 270 S 270
+
Sbjct: 379 A 379
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 80/188 (42%), Gaps = 13/188 (6%)
Query: 84 SSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRG 142
SSA A T+ + + L ++ T + LF G V I + + R+ G
Sbjct: 6 SSAPAATTQPASTPLANSSLYVGDLEKDVTEAQLFELFSSVGPVASIRVCRDAVTRRSLG 65
Query: 143 LAFVTMGS---PDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI 199
A+V S P A A+ L + G+ +++ ++ ++P + N+FI
Sbjct: 66 YAYVNYNSALDPQAADRAMETLNYHVVNGKPMRIMWSH---RDP----SARKSGVGNIFI 118
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
NL AK L + F + G ++S +V N S GYGFV F+ + A+ AI
Sbjct: 119 KNLDKTIDAKALHDTFSAFG-KILSCKVATDANGV-SKGYGFVHFEDQAAADRAIQTVNQ 176
Query: 260 KVIMCLVI 267
K I ++
Sbjct: 177 KEIEGKIV 184
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 41/88 (46%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R +Y L +N+ + +R LF GT+ ++ +++G FV S
Sbjct: 295 QERYLKYQGMNLYVKNLSDEVDDDALRELFANSGTITSCKVMKDGSGKSKGFGFVCFTSH 354
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIK 179
DEAT A+ + +G+ L V A+ K
Sbjct: 355 DEATRAVTEMNGKMVKGKPLYVALAQRK 382
>gi|126334002|ref|XP_001364932.1| PREDICTED: ELAV-like protein 2-like isoform 2 [Monodelphis
domestica]
Length = 347
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 84/181 (46%), Gaps = 13/181 (7%)
Query: 81 VDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNR 139
++++ ++ V++ E+ SKT L+ +P T E++++LF G + +L +
Sbjct: 21 INNNCSSPVDSGNTED--SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQ 78
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI 199
+ G FV P +A A+N L + +T+KV+YA+ + NL++
Sbjct: 79 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYV 129
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ L K+L + F G ++++ ++ S G GF+ F + AE AI G
Sbjct: 130 SGLPKTMTQKELEQLFSQYG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Query: 260 K 260
+
Sbjct: 189 Q 189
>gi|407927556|gb|EKG20446.1| hypothetical protein MPH_02256 [Macrophomina phaseolina MS6]
Length = 485
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 98/218 (44%), Gaps = 15/218 (6%)
Query: 60 ITPKKVSPFVFHFSATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRA 119
I P+ +P S+ + +SA + E +K L + T + +R
Sbjct: 47 IIPQNTNPIPTAISSPMSGSVMSPTSAGGY-VRRAAPEPNKRALYVGGLDPRITEDVLRQ 105
Query: 120 LFEQHGTVLDIELSMHSKNR--NRGL--AFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175
+FE G V+ +++ + KN+ ++GL FV P A A+ L ++VN+
Sbjct: 106 IFETAGHVVSVKI-IPDKNKFQSKGLNYGFVEYDDPGTAERAMQTLNGRRVHQSEIRVNW 164
Query: 176 AKIKKKNPFPPVQPKPFAT--FNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNP 233
A QPK + F++F+ +LS E + L + F + G V A V++
Sbjct: 165 AYQSNN------QPKEDTSNHFHIFVGDLSNEVNDEVLLQAFSAFG-QVSEARVMWDMKT 217
Query: 234 RRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271
RS GYGFV+F+ + AE A+S+ G+ + I ++
Sbjct: 218 GRSRGYGFVAFRDRGDAEKALSSMDGEWLGSRAIRCNW 255
Score = 40.8 bits (94), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATA 156
++ T V P+T T D+ LF+ G V++ +RG AF+ M + + A
Sbjct: 303 QWQTTCYVGNLTPYT-TQSDLVPLFQNFGYVVETRFQ-----SDRGFAFIKMDTHENAAM 356
Query: 157 ALNNLESYEFEGRTLKVNYAKIK 179
A+ L Y GR LK ++ K +
Sbjct: 357 AICQLNGYNVNGRPLKCSWGKDR 379
>gi|355745275|gb|EHH49900.1| hypothetical protein EGM_00635 [Macaca fascicularis]
Length = 289
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 73/163 (44%), Gaps = 11/163 (6%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T E+ R+LF G + +L ++ G FV P +A A
Sbjct: 61 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 120
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + +T+KV+YA+ + NL+++ L K+L + F S
Sbjct: 121 INTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQKELEQLF-S 170
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
+ ++++ ++ S G GF+ F + AE AI G+
Sbjct: 171 QYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 213
>gi|348552998|ref|XP_003462314.1| PREDICTED: polyadenylate-binding protein 4-like isoform 3 [Cavia
porcellus]
Length = 615
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 82/167 (49%), Gaps = 14/167 (8%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E+++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKIIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIALS 270
+V+ D RS G+GFV F S + A A++ G+++ L +AL+
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
>gi|328715672|ref|XP_001946271.2| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 964
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 88/189 (46%), Gaps = 18/189 (9%)
Query: 89 VNTEQREEEYSK-----TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGL 143
V RE+E + T + +N+ +++ +F+++GT+ ++ +RG
Sbjct: 480 VGRNDREKELGQQAKLYTNVYIKNIDENVNEKELFEMFKKYGTITSCKVMFKDDGSSRGF 539
Query: 144 AFVTMGSPDEATAALNNLESYEF-EGRTLKVNYAK--------IKKK-NPFPPVQPKPFA 193
FV P EA A+ L + EG+T VN A+ +K+K + + +
Sbjct: 540 GFVAFEDPKEAEKAVTELHGKKSPEGKTYYVNRAQKKTERQQELKRKFEQYKIERINRYQ 599
Query: 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETA 253
NL++ NL + LR F + G + SA+V+ D RS G+GFV F S + A A
Sbjct: 600 GVNLYVKNLDDTIDDERLRREFSAFGT-IKSAKVMMDDG--RSKGFGFVYFSSPEEATKA 656
Query: 254 ISAFQGKVI 262
++ G+++
Sbjct: 657 VTDMNGRIV 665
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPD 152
+R Y L +N+ T E +R F GT+ ++ M R++G FV SP+
Sbjct: 593 ERINRYQGVNLYVKNLDDTIDDERLRREFSAFGTIKSAKVMMDD-GRSKGFGFVYFSSPE 651
Query: 153 EATAALNNLESYEFEGRTLKVNYAKIKK 180
EAT A+ ++ + L V A+ KK
Sbjct: 652 EATKAVTDMNGRIVGTKPLYVTLAQRKK 679
>gi|296815242|ref|XP_002847958.1| polyadenylate-binding protein [Arthroderma otae CBS 113480]
gi|238840983|gb|EEQ30645.1| polyadenylate-binding protein [Arthroderma otae CBS 113480]
Length = 708
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 72/138 (52%), Gaps = 11/138 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALN 159
T + +NV T E+ RALFE++G + LS ++ ++RG FV + A+AA+
Sbjct: 167 TNIYVKNVEQDVTDEEFRALFEKYGDITSATLSRDNETGKSRGFGFVNFSDHEAASAAVE 226
Query: 160 NLESYEFEGRTLKVNYAK--------IKKKNPFPPVQ-PKPFATFNLFIANLSFEARAKD 210
L YE +G+ L V A+ ++K+ ++ + NL+I NLS + +
Sbjct: 227 GLNEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEK 286
Query: 211 LREFFISEGWDVVSAEVI 228
LRE F S G ++ SA+V+
Sbjct: 287 LRELFSSYG-NITSAKVM 303
Score = 38.1 bits (87), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 69/148 (46%), Gaps = 11/148 (7%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G +L +++ ++G FV + + AT A+ ++ + +
Sbjct: 86 DNKALHDTFAAFGNILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVF 145
Query: 173 VNY--AKIKKKNPFPPVQPKPFATF-NLFIANLSFEARAKDLREFFISEGWDVVSAEVIF 229
V + AK +++ F ++ A F N+++ N+ + ++ R F G D+ SA +
Sbjct: 146 VGHHIAKKDRQSKFEEMK----ANFTNIYVKNVEQDVTDEEFRALFEKYG-DITSATLSR 200
Query: 230 HDNPRRSAGYGFVSFKSKKVAETAISAF 257
+ +S G+GFV+F + A A+
Sbjct: 201 DNETGKSRGFGFVNFSDHEAASAAVEGL 228
Score = 37.0 bits (84), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 10/144 (6%)
Query: 120 LFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178
LF G V I + + R+ G A+V + + AL +L +GR ++ +++
Sbjct: 5 LFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGRPCRIMWSQ- 63
Query: 179 KKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAG 238
++P + N+FI NL K L + F + G +++S +V D S G
Sbjct: 64 --RDPAL----RKTGQGNVFIKNLDTAIDNKALHDTFAAFG-NILSCKVA-QDEYGNSKG 115
Query: 239 YGFVSFKSKKVAETAISAFQGKVI 262
YGFV +++ + A AI G ++
Sbjct: 116 YGFVHYETAEAATNAIKHVNGMLL 139
>gi|281349018|gb|EFB24602.1| hypothetical protein PANDA_005072 [Ailuropoda melanoleuca]
gi|351703220|gb|EHB06139.1| ELAV-like protein 2 [Heterocephalus glaber]
gi|355567720|gb|EHH24061.1| Hu-antigen B [Macaca mulatta]
gi|355753294|gb|EHH57340.1| Hu-antigen B [Macaca fascicularis]
gi|431914785|gb|ELK15810.1| ELAV-like protein 2 [Pteropus alecto]
Length = 387
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 84/181 (46%), Gaps = 13/181 (7%)
Query: 81 VDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNR 139
++++ ++ V++ E+ SKT L+ +P T E++++LF G + +L +
Sbjct: 49 INNNCSSPVDSGNTED--SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQ 106
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI 199
+ G FV P +A A+N L + +T+KV+YA+ + NL++
Sbjct: 107 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYV 157
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ L K+L + F G ++++ ++ S G GF+ F + AE AI G
Sbjct: 158 SGLPKTMTQKELEQLFSQYG-RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 216
Query: 260 K 260
+
Sbjct: 217 Q 217
>gi|149016333|gb|EDL75579.1| nucleolin, isoform CRA_d [Rattus norvegicus]
gi|149016334|gb|EDL75580.1| nucleolin, isoform CRA_d [Rattus norvegicus]
Length = 496
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 90/173 (52%), Gaps = 13/173 (7%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAAL 158
SKT LV N+ +++T E ++ +FE+ T + + + H K++ G AF+ S ++A AL
Sbjct: 271 SKT-LVLSNLSYSATEETLQEVFEK-ATFIKVPQNPHGKSK--GYAFIEFASFEDAKEAL 326
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISE 218
N+ E EGRT+++ +++ P + +P T LF+ LS + + L+E F E
Sbjct: 327 NSCNKMEIEGRTIRL---ELQGPRGSPNARSQPSKT--LFVKGLSEDTTEETLKESF--E 379
Query: 219 GWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271
G V A ++ S G+GFV F S++ A+ A A + I + L +
Sbjct: 380 G--SVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 430
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 84/171 (49%), Gaps = 15/171 (8%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKN-RNRGLAFVTMGSPDEATAALNNL 161
L+A+N+ + T ++++ +FE +E+ + S++ R++G+A++ S +A L
Sbjct: 182 LLAKNLSFNITEDELKEVFEDA-----VEIRLVSQDGRSKGIAYIEFKSEADAEKNLEEK 236
Query: 162 ESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA--TFNLFIANLSFEARAKDLREFFISEG 219
+ E +GR++ + Y K + + ++ + L ++NLS+ A + L+E F
Sbjct: 237 QGAEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKAT 296
Query: 220 WDVVSAEVIFHDNPR-RSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIAL 269
+ + NP +S GY F+ F S + A+ A+++ I I L
Sbjct: 297 F------IKVPQNPHGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRL 341
Score = 40.4 bits (93), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 55/132 (41%), Gaps = 14/132 (10%)
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI 199
NR +V S ++ AL E G LKV +IK + P K A L
Sbjct: 133 NRKFGYVDFESAEDLEKAL------ELTG--LKVFGNEIKLEKPKGRDSKKVRAARTLLA 184
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
NLSF +L+E F D V ++ D RS G ++ FKS+ AE + QG
Sbjct: 185 KNLSFNITEDELKEVF----EDAVEIRLVSQDG--RSKGIAYIEFKSEADAEKNLEEKQG 238
Query: 260 KVIMCLVIALSY 271
I ++L Y
Sbjct: 239 AEIDGRSVSLYY 250
>gi|449266192|gb|EMC77278.1| ELAV-like protein 2 [Columba livia]
Length = 388
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 74/165 (44%), Gaps = 11/165 (6%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEAT 155
E SKT L+ +P T E++++LF G + +L ++ G FV P +A
Sbjct: 63 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDAE 122
Query: 156 AALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFF 215
A+N L + +T+KV+YA+ + NL+++ L K+L + F
Sbjct: 123 KAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQKELEQLF 173
Query: 216 ISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 174 SQYG-RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 217
>gi|281337375|gb|EFB12959.1| hypothetical protein PANDA_010283 [Ailuropoda melanoleuca]
Length = 369
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 78/166 (46%), Gaps = 17/166 (10%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR----NRGLAFVTMGSPDEA 154
SKT L+ +P T ++ ++LF G++ DIE +++ + G FV P++A
Sbjct: 34 SKTNLIVNYLPQNMTQDEFKSLF---GSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDA 90
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
A+N L + + +T+KV+YA+ + NL+++ L K++ +
Sbjct: 91 DKAINTLNGLKLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMSQKEMEQL 141
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
F G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 142 FSQYG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 186
>gi|401415854|ref|XP_003872422.1| putative RNA-binding protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322488646|emb|CBZ23893.1| putative RNA-binding protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 638
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 79/173 (45%), Gaps = 17/173 (9%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIEL--SMHSKNRNRGLAFVTMGSPDEATA 156
S+T L + + T +D+R LFEQ+GT++ L +H+ + G AFV + DEA A
Sbjct: 63 SQTNLFVRKLASAVTEDDMRKLFEQYGTIMSFALMRDIHT-GESLGTAFVRYSTHDEARA 121
Query: 157 ALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFI 216
A+ L+ E GR + + +A K+++ P LF+ N+ + A+ LR+ F
Sbjct: 122 AMAALDGRELYGRPISIQWA--KREHDSTPCGDARRKIRKLFVRNIPLDVTARHLRQIFS 179
Query: 217 SEG--------WDVVSAEVIFHDNPRRSA----GYGFVSFKSKKVAETAISAF 257
G D A + + R A F+ F+ VAE A+S
Sbjct: 180 KFGSINNVTLHSDTAPAAARDNGDNSRPASQMRNIAFILFQEDDVAEQAVSTL 232
>gi|73977005|ref|XP_860272.1| PREDICTED: ELAV-like protein 4 isoform 15 [Canis lupus familiaris]
Length = 380
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 73/163 (44%), Gaps = 11/163 (6%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T E+ R+LF G + +L ++ G FV P +A A
Sbjct: 44 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 103
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + +T+KV+YA+ + NL+++ L K+L + F S
Sbjct: 104 INTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQKELEQLF-S 153
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
+ ++++ ++ S G GF+ F + AE AI G+
Sbjct: 154 QYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 196
>gi|328724866|ref|XP_003248272.1| PREDICTED: heterogeneous nuclear ribonucleoprotein 27C-like isoform
2 [Acyrthosiphon pisum]
Length = 432
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 77/162 (47%), Gaps = 9/162 (5%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEA 154
EE + +L + W + E ++ F ++G V+D + +S+ R+RG FVT P+
Sbjct: 8 EEDEQGKLFVGGLSWETQQESLQRYFNRYGEVIDCVVMKNSESGRSRGFGFVTFADPNNV 67
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF-NLFIANLSFEARAKDLRE 213
L N + +GRT+ K NP +PK +++ +F+ L DLR
Sbjct: 68 NVVLQN-GPHVLDGRTID-----PKPCNPRTLQKPKRSSSYPKVFLGGLPSNVTETDLRT 121
Query: 214 FFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
FF G V+ +++ ++S G+GF+SF+ + ++
Sbjct: 122 FFSRYG-KVMEVVIMYDQEKKKSRGFGFLSFEDDDAVDRCVA 162
>gi|312067233|ref|XP_003136646.1| hypothetical protein LOAG_01058 [Loa loa]
gi|307768188|gb|EFO27422.1| hypothetical protein LOAG_01058 [Loa loa]
Length = 655
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 80/170 (47%), Gaps = 17/170 (10%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E + LF + G + + + + +++G FV +P++A A+ + YE G K+
Sbjct: 213 EALEKLFSKFGKITSAAVMVDADGKSKGFGFVAFENPEDAEKAVTEMHEYELPGTERKLY 272
Query: 175 YAKIKKKNPFPP-----------VQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVV 223
+ +KKN + + + NL++ NL L++ F + G +
Sbjct: 273 VCRAQKKNERSAELKRRYEQQKVERMQRYQGVNLYVKNLDDTVNDDILKQNFEAYG-KIT 331
Query: 224 SAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC---LVIALS 270
SA+V+ DN RS G+GFV F+ A A++ GK +MC L +AL+
Sbjct: 332 SAKVMCDDNG-RSKGFGFVCFEKPDEATKAVTEMNGK-MMCTKPLYVALA 379
Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 69/143 (48%), Gaps = 10/143 (6%)
Query: 121 FEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179
F G VL I + + R+ G A+V P +A AL+ + G+ +++ +++
Sbjct: 38 FSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALDTMNFDMMYGKPIRIMWSQ-- 95
Query: 180 KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
++P + N+FI NL K + + F G +++S +V +D S GY
Sbjct: 96 -RDP----SMRRSGAGNIFIKNLDKSIDNKAIYDTFSMFG-NILSCKVA-NDEESNSKGY 148
Query: 240 GFVSFKSKKVAETAISAFQGKVI 262
GFV F++++ A+ AI G ++
Sbjct: 149 GFVHFETEESAQKAIEKVNGMLL 171
Score = 38.1 bits (87), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 40/88 (45%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPD 152
+R + Y L +N+ T + ++ FE +G + ++ R++G FV PD
Sbjct: 296 ERMQRYQGVNLYVKNLDDTVNDDILKQNFEAYGKITSAKVMCDDNGRSKGFGFVCFEKPD 355
Query: 153 EATAALNNLESYEFEGRTLKVNYAKIKK 180
EAT A+ + + L V A+ K+
Sbjct: 356 EATKAVTEMNGKMMCTKPLYVALAQRKE 383
>gi|256075087|ref|XP_002573852.1| polyadenylate binding protein [Schistosoma mansoni]
gi|360044949|emb|CCD82497.1| putative polyadenylate binding protein [Schistosoma mansoni]
Length = 724
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 80/180 (44%), Gaps = 14/180 (7%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLE 162
L +N P + +E ++ +F + G + + S+ +++G FV PD A A+ +
Sbjct: 194 LYIKNFPPETDNEKLKEMFNEFGEIKSACVMKDSEGKSKGFGFVCFLDPDHAENAVKTMH 253
Query: 163 SYEFEGRTLKVNYAKIKK----------KNPFPPVQPKPFATFNLFIANLSFEARAKDLR 212
E EGR L A+ K+ + Q NL++ NL K L
Sbjct: 254 GKEIEGRALYCARAQRKEERQEELKQRLEKQRAERQSSYMLNVNLYVKNLDDNIDDKRLE 313
Query: 213 EFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIALS 270
E F G + SA+V+ D RS G+GFV F + + A A++ G +I L +AL+
Sbjct: 314 EAFSVHG-SITSAKVM-KDANNRSKGFGFVCFANPEQAARAVTDMNGTIIGSKPLYVALA 371
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 70/152 (46%), Gaps = 10/152 (6%)
Query: 117 IRALFEQHGTVLDIELSMHSKNRNR-GLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175
++A F + G VL + R+ G +V P A AL L GR +++ +
Sbjct: 29 LQAKFSEIGPVLSARVCRDLATRHSLGYGYVNFEDPKHAEQALEVLNYESLMGRPIRIMW 88
Query: 176 AKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRR 235
++ ++P + N+FI NL K+L + F G ++S +++ +N +
Sbjct: 89 SQ---RDP----SLRKSGKGNIFIKNLDKSIEQKELYDTFSFFGR-ILSCKIVMDENGQ- 139
Query: 236 SAGYGFVSFKSKKVAETAISAFQGKVIMCLVI 267
S GYGFV F+ ++ AE AI +I V+
Sbjct: 140 SKGYGFVHFEKEECAERAIEKINNMIIRDRVV 171
>gi|179537|gb|AAA58396.1| brain protein [Homo sapiens]
gi|14280329|gb|AAK57541.1| HUDPRO1 [Homo sapiens]
gi|119627247|gb|EAX06842.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu
antigen D), isoform CRA_b [Homo sapiens]
Length = 380
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 73/163 (44%), Gaps = 11/163 (6%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T E+ R+LF G + +L ++ G FV P +A A
Sbjct: 44 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 103
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + +T+KV+YA+ + NL+++ L K+L + F S
Sbjct: 104 INTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQKELEQLF-S 153
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
+ ++++ ++ S G GF+ F + AE AI G+
Sbjct: 154 QYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 196
>gi|395514484|ref|XP_003761447.1| PREDICTED: ELAV-like protein 2-like isoform 2 [Sarcophilus
harrisii]
Length = 347
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 74/165 (44%), Gaps = 11/165 (6%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEAT 155
E SKT L+ +P T E++++LF G + +L ++ G FV P +A
Sbjct: 35 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94
Query: 156 AALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFF 215
A+N L + +T+KV+YA+ + NL+++ L K+L + F
Sbjct: 95 KAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQKELEQLF 145
Query: 216 ISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 146 SQYG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 189
>gi|350585908|ref|XP_003482078.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Sus scrofa]
Length = 660
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 82/167 (49%), Gaps = 14/167 (8%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E+++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIALS 270
+V+ D RS G+GFV F S + A A++ G+++ L +AL+
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Score = 43.9 bits (102), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 74/156 (47%), Gaps = 9/156 (5%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G +L ++ + +N ++G AFV + + A A+ + R +
Sbjct: 111 DNKALYDTFSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVF 169
Query: 173 VNYAKIKKKNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD 231
V K +K+ + K F N++I N E ++L+E F S+ +S +V+ D
Sbjct: 170 VGRFKSRKEREAELGAKAKEFT--NVYIKNFGEEVDDENLKELF-SQFGKTLSVKVM-RD 225
Query: 232 NPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVI 267
+S G+GFVS++ + A A+ GK I VI
Sbjct: 226 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVI 261
>gi|334321532|ref|XP_003340124.1| PREDICTED: ELAV-like protein 4 isoform 2 [Monodelphis domestica]
Length = 347
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 80/189 (42%), Gaps = 11/189 (5%)
Query: 73 SATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIEL 132
S TT P + + + + SKT L+ +P T E+ R+LF G + +L
Sbjct: 11 SNTTNGPSSNGRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKL 70
Query: 133 SMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKP 191
++ G FV P +A A+N L + +T+KV+YA+ +
Sbjct: 71 VRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS--------- 121
Query: 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAE 251
NL+++ L K+L + F G ++++ ++ S G GF+ F + AE
Sbjct: 122 IRDANLYVSGLPKTMTQKELEQLFSQYG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAE 180
Query: 252 TAISAFQGK 260
AI G+
Sbjct: 181 EAIKGLNGQ 189
>gi|355755476|gb|EHH59223.1| Hu-antigen C, partial [Macaca fascicularis]
Length = 237
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 78/166 (46%), Gaps = 17/166 (10%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR----NRGLAFVTMGSPDEA 154
SKT L+ +P T ++ ++LF G++ DIE +++ + G FV P++A
Sbjct: 36 SKTNLIVNYLPQNMTQDEFKSLF---GSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDA 92
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
A+N L + + +T+KV+YA+ + NL+++ L K++ +
Sbjct: 93 DKAINTLNGLKLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMSQKEMEQL 143
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
F G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 144 FSQYGR-IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 188
>gi|255936927|ref|XP_002559490.1| Pc13g10700 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211584110|emb|CAP92139.1| Pc13g10700 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 301
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 85/187 (45%), Gaps = 26/187 (13%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATA 156
E S TRL N+P T DI F HG+ E+ + + G F+ D+ A
Sbjct: 3 EVSSTRLYLGNLPRNVTKSDIEEHFSSHGSGKITEIKLMN-----GFGFIEYD--DQLDA 55
Query: 157 ALNNLESYEFEGRTLKVNYAK-IKKKNPFP-PVQ----PKPFAT-FNLFIANLSFEARAK 209
+ EF+G L V +A+ ++K FP P + P+P T F + I+ L E +
Sbjct: 56 RDIVPDGSEFKGERLTVQFARGPRRKEAFPGPSERNALPRPRRTIFRMQISGLP-ETSWQ 114
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA-----FQGKVIMC 264
DL++F G DVV +E R G GFV F++ +TA+ F+G V+ C
Sbjct: 115 DLKDFARQSGLDVVYSETG------REQGRGFVEFETANDLKTAVEKLDQREFKGSVVSC 168
Query: 265 LVIALSY 271
+ S+
Sbjct: 169 VADIQSF 175
>gi|34419622|ref|NP_570951.2| polyadenylate-binding protein 4 isoform 1 [Mus musculus]
gi|33991671|gb|AAH56432.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
gi|148698437|gb|EDL30384.1| mCG5546, isoform CRA_c [Mus musculus]
Length = 660
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 81/166 (48%), Gaps = 14/166 (8%)
Query: 116 DIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175
+++ LF Q G L +++ S +++G FV+ ++A A+ + E G+ + V
Sbjct: 206 NLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGR 265
Query: 176 AKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSAE 226
A+ K K F ++ + + + NL+I NL + LR F G + SA+
Sbjct: 266 AQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRREFSPFG-SITSAK 324
Query: 227 VIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIALS 270
V+ D RS G+GFV F S + A A++ G+++ L +AL+
Sbjct: 325 VMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
>gi|392540155|ref|ZP_10287292.1| hypothetical protein Pmarm_18718 [Pseudoalteromonas marina mano4]
Length = 159
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 58/99 (58%), Gaps = 5/99 (5%)
Query: 87 AAVNTEQREEEYSKTR-LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKN--RNRGL 143
AA++++ EE KT+ L N+P+ + +RALFE+ G V ++ L + KN + RG
Sbjct: 50 AAMSSDVLEEAEVKTKTLYVGNLPYRANEGVVRALFEEQGKVFNVRL-LKDKNTGKRRGF 108
Query: 144 AFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKN 182
FV M D A A+ NL EF+ RTLKV AK K+++
Sbjct: 109 GFVEMAQAD-ADNAIANLNDSEFQQRTLKVREAKQKQED 146
>gi|348553000|ref|XP_003462315.1| PREDICTED: polyadenylate-binding protein 4-like isoform 4 [Cavia
porcellus]
Length = 631
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 82/167 (49%), Gaps = 14/167 (8%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E+++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKIIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIALS 270
+V+ D RS G+GFV F S + A A++ G+++ L +AL+
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
>gi|348552994|ref|XP_003462312.1| PREDICTED: polyadenylate-binding protein 4-like isoform 1 [Cavia
porcellus]
Length = 660
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 82/167 (49%), Gaps = 14/167 (8%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E+++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKIIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIALS 270
+V+ D RS G+GFV F S + A A++ G+++ L +AL+
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
>gi|409080475|gb|EKM80835.1| hypothetical protein AGABI1DRAFT_112564 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426197375|gb|EKV47302.1| hypothetical protein AGABI2DRAFT_192533 [Agaricus bisporus var.
bisporus H97]
Length = 168
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 104 VAQNVPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSPDEATAALNNLE 162
V +N+ W +T E +R F G VLD I + R+RG FVT + EA AA+N L
Sbjct: 30 VYRNLSWNTTDETLRQAFSDFGQVLDSIVMRDRDTGRSRGFGFVTFSNSGEADAAINGLN 89
Query: 163 SYEFEGRTLKVNYAKIK 179
E +GR +KVN A +
Sbjct: 90 EQELDGRRIKVNMANAR 106
>gi|348552996|ref|XP_003462313.1| PREDICTED: polyadenylate-binding protein 4-like isoform 2 [Cavia
porcellus]
Length = 644
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 86/181 (47%), Gaps = 14/181 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N E+++ LF Q G L +++ +++G FV+ ++A A+
Sbjct: 191 TNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEE 250
Query: 161 LESYEFEGRTLKVNYAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDL 211
+ E G+ + V A+ K K F ++ + + + NL+I NL + L
Sbjct: 251 MNGKEINGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 310
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIAL 269
R+ F G + SA+V+ D RS G+GFV F S + A A++ G+++ L +AL
Sbjct: 311 RKEFSPFG-SITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVAL 367
Query: 270 S 270
+
Sbjct: 368 A 368
Score = 37.0 bits (84), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ ++ M R++G FV SP
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-MLEDGRSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|431093|gb|AAA58677.1| huc [Homo sapiens]
Length = 359
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 78/166 (46%), Gaps = 17/166 (10%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKN----RNRGLAFVTMGSPDEA 154
SKT L+ +P T ++ ++LF G++ DIE ++ R+ G FV P++A
Sbjct: 37 SKTNLIVNYLPQNMTQDEFKSLF---GSIGDIESCKLVRDKITGRDLGYGFVNYPDPNDA 93
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
A+N L + + +T+KV+YA+ + NL+++ L K++ +
Sbjct: 94 DKAINTLNGLKLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMSQKEMEQL 144
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
F G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 145 FSQYG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 189
>gi|355557990|gb|EHH14770.1| hypothetical protein EGK_00744 [Macaca mulatta]
Length = 385
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 72/163 (44%), Gaps = 11/163 (6%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T E+ R+LF G + +L ++ G FV P +A A
Sbjct: 49 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 108
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + +T+KV+YA+ + NL+++ L K+L + F
Sbjct: 109 INTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQKELEQLFSQ 159
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 160 YG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 201
>gi|426215230|ref|XP_004001877.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Ovis aries]
Length = 631
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 82/167 (49%), Gaps = 14/167 (8%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E+++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIALS 270
+V+ D RS G+GFV F S + A A++ G+++ L +AL+
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Score = 43.9 bits (102), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 74/156 (47%), Gaps = 9/156 (5%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G +L ++ + +N ++G AFV + + A A+ + R +
Sbjct: 111 DNKALYDTFSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVF 169
Query: 173 VNYAKIKKKNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD 231
V K +K+ + K F N++I N E ++L+E F S+ +S +V+ D
Sbjct: 170 VGRFKSRKEREAELGAKAKEFT--NVYIKNFGEEVDDENLKELF-SQFGKTLSVKVM-RD 225
Query: 232 NPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVI 267
+S G+GFVS++ + A A+ GK I VI
Sbjct: 226 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVI 261
>gi|348513241|ref|XP_003444151.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Oreochromis niloticus]
Length = 637
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 14/167 (8%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E +R LF ++G + I + ++RG FV+ ++A A++ + E G+ + V
Sbjct: 205 EKLRELFSKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQKAVDEMNGKEMNGKLMYVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + NL++ NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLRKEFSPFGT-ITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIALS 270
+V+ RS G+GFV F S + A A++ G+++ L +AL+
Sbjct: 324 KVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 78/155 (50%), Gaps = 16/155 (10%)
Query: 114 HEDIR--ALFEQ---HGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFE 167
H+D+ L+E+ G +L I + R+ G A+V P +A AL+ + +
Sbjct: 19 HQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIK 78
Query: 168 GRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEV 227
G+ +++ +++ ++P + N+FI NL K L + F + G +++S +V
Sbjct: 79 GQPVRIMWSQ---RDP----SLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCKV 130
Query: 228 IFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
+ +N S GYGFV F++++ AE AI G ++
Sbjct: 131 VCDENG--SKGYGFVHFETQEAAERAIEKMNGMLL 163
>gi|317036295|ref|XP_001398046.2| C6 transcription factor [Aspergillus niger CBS 513.88]
Length = 1095
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 77/165 (46%), Gaps = 5/165 (3%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEF 166
NV + T ED++ E++G V + L + ++ ++G +V S D A A++ L F
Sbjct: 916 NVFYDVTREDLKKAMEKYGVVEKVVLVLDNRGISKGYGYVQFDSIDAAQRAVDALNMRLF 975
Query: 167 EGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAE 226
EGR + V +A+ N + Q T L+I NL FE +DL E F + +VV
Sbjct: 976 EGRRVTVQFAQ---NNVYHRRQLN-APTRTLYIGNLPFEMTDRDLNELF-KDVQNVVDIR 1030
Query: 227 VIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271
V ++ G+ F S A+ A++ + K+ + L Y
Sbjct: 1031 VAVDRRTGQARGFAHAEFVSTSSAKAAMAILENKLPYGRRLRLDY 1075
Score = 40.8 bits (94), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 7/81 (8%)
Query: 187 VQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKS 246
+Q P +FI N+ ++ +DL++ E + VV V+ DN S GYG+V F S
Sbjct: 902 LQEPPTPKETVFIGNVFYDVTREDLKKAM--EKYGVVEKVVLVLDNRGISKGYGYVQFDS 959
Query: 247 KKVAETAISA-----FQGKVI 262
A+ A+ A F+G+ +
Sbjct: 960 IDAAQRAVDALNMRLFEGRRV 980
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Query: 87 AAVNTEQREEEYSKTR-LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLA 144
A N R + + TR L N+P+ T D+ LF+ V+DI +++ + + RG A
Sbjct: 985 AQNNVYHRRQLNAPTRTLYIGNLPFEMTDRDLNELFKDVQNVVDIRVAVDRRTGQARGFA 1044
Query: 145 FVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKK 181
S A AA+ LE+ GR L+++Y+K +
Sbjct: 1045 HAEFVSTSSAKAAMAILENKLPYGRRLRLDYSKATSR 1081
>gi|156376666|ref|XP_001630480.1| predicted protein [Nematostella vectensis]
gi|156217502|gb|EDO38417.1| predicted protein [Nematostella vectensis]
Length = 305
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 74/166 (44%), Gaps = 12/166 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNN 160
+L + + +T E ++ F ++G ++ +++ M + R RG AFV EA A LN
Sbjct: 30 KLFVGGLSYETTKESLKEYFSKYGELVGVDIKMDALTGRPRGFAFVQFKHQSEADAVLNQ 89
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGW 220
++ + +GRT I K P +P +F+ L E + +RE+F
Sbjct: 90 VDPHVLDGRT-------IDPKPAAPIGKPPHLRVKKIFVGGLKPETSDEKIREYFGKAYA 142
Query: 221 DVVSAEVIFHDNPRRSAGYGFVSFKSK----KVAETAISAFQGKVI 262
V E I + R G+ FVSF S+ K+ ET +G +
Sbjct: 143 PVKEIEYITEHSSNRRRGFCFVSFDSEDTVDKICETQFHNIEGNKV 188
>gi|139948570|ref|NP_001077193.1| polyadenylate-binding protein 4 [Bos taurus]
gi|134024563|gb|AAI34510.1| PABPC4 protein [Bos taurus]
gi|296488909|tpg|DAA31022.1| TPA: poly A binding protein, cytoplasmic 4 [Bos taurus]
Length = 645
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 86/181 (47%), Gaps = 14/181 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N E+++ LF Q G L +++ +++G FV+ ++A A+
Sbjct: 191 TNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEE 250
Query: 161 LESYEFEGRTLKVNYAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDL 211
+ E G+ + V A+ K K F ++ + + + NL+I NL + L
Sbjct: 251 MNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 310
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIAL 269
R+ F G + SA+V+ D RS G+GFV F S + A A++ G+++ L +AL
Sbjct: 311 RKEFSPFG-SITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVAL 367
Query: 270 S 270
+
Sbjct: 368 A 368
Score = 44.3 bits (103), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 74/156 (47%), Gaps = 9/156 (5%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G +L ++ + +N ++G AFV + + A A+ + R +
Sbjct: 111 DNKALYDTFSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVF 169
Query: 173 VNYAKIKKKNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD 231
V K +K+ + K F N++I N E ++L+E F S+ +S +V+ D
Sbjct: 170 VGRFKSRKEREAELGAKAKEFT--NVYIKNFGEEVDDENLKELF-SQFGKTLSVKVM-RD 225
Query: 232 NPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVI 267
+S G+GFVS++ + A A+ GK I VI
Sbjct: 226 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVI 261
>gi|356544204|ref|XP_003540544.1| PREDICTED: splicing factor 3B subunit 4-like [Glycine max]
Length = 364
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 76/155 (49%), Gaps = 9/155 (5%)
Query: 120 LFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178
LF Q G V+++ + N+++G FV S ++A A+ L + G+ ++VN A
Sbjct: 44 LFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQ 103
Query: 179 KKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAG 238
KK+ NLFI NL + K L + F + G V + +++ S G
Sbjct: 104 DKKSLD--------VGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPETGNSRG 155
Query: 239 YGFVSFKSKKVAETAISAFQGKVIMCLVIALSYLY 273
+GF+S+ S + +++AI A G+ + I +SY Y
Sbjct: 156 FGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAY 190
>gi|126273923|ref|XP_001387749.1| nuclear localization sequence binding protein [Scheffersomyces
stipitis CBS 6054]
gi|126213619|gb|EAZ63726.1| nuclear localization sequence binding protein, partial
[Scheffersomyces stipitis CBS 6054]
Length = 245
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 77/177 (43%), Gaps = 9/177 (5%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAALNNL 161
L + W E +R FE G V+ + M + ++RG +V S A ALN
Sbjct: 5 LFVGRLSWNIDDEWLRREFEPLGGVISARVIMERATGKSRGYGYVDFDSKSAAEKALNEY 64
Query: 162 ESYEFEGRTLKVNYAKIK------KKNPFPPVQPKPFA-TFNLFIANLSFEARAKDLREF 214
+ E +GR + ++ + K +N P A + LFI NLSF A +L
Sbjct: 65 QGRELDGRPINLDMSTGKPHVTKSTENRAKQYGDTPSAPSDTLFIGNLSFNADRDNLFNI 124
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271
F G V+S + H + ++ G+G+V F S A+ A+ A G+ I L +
Sbjct: 125 FGVHG-TVISCRIPTHPDTQQPKGFGYVQFSSVDEAKAAMEALNGEYIEGRACRLDF 180
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 7/96 (7%)
Query: 91 TEQREEEYSKT------RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRN-RGL 143
TE R ++Y T L N+ + + +++ +F HGTV+ + H + +G
Sbjct: 89 TENRAKQYGDTPSAPSDTLFIGNLSFNADRDNLFNIFGVHGTVISCRIPTHPDTQQPKGF 148
Query: 144 AFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179
+V S DEA AA+ L EGR +++++ K
Sbjct: 149 GYVQFSSVDEAKAAMEALNGEYIEGRACRLDFSTPK 184
>gi|117647212|ref|NP_001071119.1| ELAV-like protein 4 [Rattus norvegicus]
gi|2500581|sp|O09032.1|ELAV4_RAT RecName: Full=ELAV-like protein 4; AltName: Full=Hu-antigen D;
Short=HuD; AltName: Full=Paraneoplastic
encephalomyelitis antigen HuD
gi|1911579|gb|AAB50733.1| HuD [Rattus sp.]
gi|165970854|gb|AAI58559.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu
antigen D) [Rattus norvegicus]
Length = 373
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 72/163 (44%), Gaps = 11/163 (6%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T E+ R+LF G + +L ++ G FV P +A A
Sbjct: 37 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 96
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + +T+KV+YA+ + NL+++ L K+L + F
Sbjct: 97 INTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQKELEQLFSQ 147
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 148 YGR-IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 189
>gi|289739881|gb|ADD18688.1| RNA-binding protein musashi [Glossina morsitans morsitans]
Length = 422
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 71/157 (45%), Gaps = 8/157 (5%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSPDEA 154
EE + +L + W +T E++ F + G ++D + + + R+RG FVT P
Sbjct: 2 EEDERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPANV 61
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
L + + +GRT+ K NP +PK + +F+ L DLR F
Sbjct: 62 QHVLQS-GPHTLDGRTIDP-----KPCNPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTF 115
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAE 251
F G V +++ ++S G+GF+SF+ + E
Sbjct: 116 FGRYG-KVTEVVIMYDQEKKKSRGFGFLSFEEESSVE 151
>gi|317152646|ref|YP_004120694.1| RNP-1 like RNA-binding protein [Desulfovibrio aespoeensis Aspo-2]
gi|316942897|gb|ADU61948.1| RNP-1 like RNA-binding protein [Desulfovibrio aespoeensis Aspo-2]
Length = 87
Score = 61.2 bits (147), Expect = 5e-07, Method: Composition-based stats.
Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIEL-SMHSKNRNRGLAFVTMGSPDEATAALNNL 161
L N+PW T E++RA FE +G V ++L + H +R RG FV MG A A+ NL
Sbjct: 5 LYVGNLPWNCTEEELRAAFEAYGEVRSVKLVNDHETDRPRGFGFVEMGD-QGALEAVENL 63
Query: 162 ESYEFEGRTLKVNYAKIKKKNP 183
GR++KVN A+ + + P
Sbjct: 64 NGSSLGGRSIKVNEARPRPERP 85
>gi|426215228|ref|XP_004001876.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Ovis aries]
Length = 644
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 86/181 (47%), Gaps = 14/181 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N E+++ LF Q G L +++ +++G FV+ ++A A+
Sbjct: 191 TNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEE 250
Query: 161 LESYEFEGRTLKVNYAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDL 211
+ E G+ + V A+ K K F ++ + + + NL+I NL + L
Sbjct: 251 MNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 310
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIAL 269
R+ F G + SA+V+ D RS G+GFV F S + A A++ G+++ L +AL
Sbjct: 311 RKEFSPFG-SITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVAL 367
Query: 270 S 270
+
Sbjct: 368 A 368
Score = 44.3 bits (103), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 74/156 (47%), Gaps = 9/156 (5%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G +L ++ + +N ++G AFV + + A A+ + R +
Sbjct: 111 DNKALYDTFSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVF 169
Query: 173 VNYAKIKKKNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD 231
V K +K+ + K F N++I N E ++L+E F S+ +S +V+ D
Sbjct: 170 VGRFKSRKEREAELGAKAKEFT--NVYIKNFGEEVDDENLKELF-SQFGKTLSVKVM-RD 225
Query: 232 NPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVI 267
+S G+GFVS++ + A A+ GK I VI
Sbjct: 226 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVI 261
>gi|348513239|ref|XP_003444150.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Oreochromis niloticus]
Length = 634
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 14/167 (8%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E +R LF ++G + I + ++RG FV+ ++A A++ + E G+ + V
Sbjct: 205 EKLRELFSKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQKAVDEMNGKEMNGKLMYVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + NL++ NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLRKEFSPFGT-ITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIALS 270
+V+ RS G+GFV F S + A A++ G+++ L +AL+
Sbjct: 324 KVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 78/155 (50%), Gaps = 16/155 (10%)
Query: 114 HEDIR--ALFEQ---HGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFE 167
H+D+ L+E+ G +L I + R+ G A+V P +A AL+ + +
Sbjct: 19 HQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIK 78
Query: 168 GRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEV 227
G+ +++ +++ ++P + N+FI NL K L + F + G +++S +V
Sbjct: 79 GQPVRIMWSQ---RDP----SLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCKV 130
Query: 228 IFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
+ +N S GYGFV F++++ AE AI G ++
Sbjct: 131 VCDENG--SKGYGFVHFETQEAAERAIEKMNGMLL 163
>gi|312380126|gb|EFR26210.1| hypothetical protein AND_07855 [Anopheles darlingi]
Length = 388
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 73/171 (42%), Gaps = 30/171 (17%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIEL--------SMHSKNRNRGLAFVTM 148
E ++T L+ +P T T E+IR+LF G V ++L K ++ G FV
Sbjct: 74 ETARTNLIVNYLPQTMTEEEIRSLFSSVGEVESVKLVRDKNVIYPGQPKGQSLGYGFVNY 133
Query: 149 GSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARA 208
P +A A+N L + + LKV++A+ + NL+I+ L
Sbjct: 134 HRPQDAEQAVNVLNGLRLQNKVLKVSFARPSSEG---------IKGANLYISGLPKTITQ 184
Query: 209 KDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
++L EG +D P+ G GF+ F +K AE AI A G
Sbjct: 185 EELETTLPPEG----------NDKPK---GVGFIRFDQRKEAERAIQALNG 222
>gi|242279861|ref|YP_002991990.1| RNP-1 like RNA-binding protein [Desulfovibrio salexigens DSM 2638]
gi|242122755|gb|ACS80451.1| RNP-1 like RNA-binding protein [Desulfovibrio salexigens DSM 2638]
Length = 88
Score = 61.2 bits (147), Expect = 5e-07, Method: Composition-based stats.
Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIEL-SMHSKNRNRGLAFVTMGSPDEATAALNNLESYE 165
N+PW+S+ ED+RA FE+ G V+ ++L + R RG FV M + A A+ NL+ +
Sbjct: 9 NLPWSSSEEDVRAAFEEFGEVISVKLINDRETGRPRGFGFVEM-EDEGAIQAIENLDGSD 67
Query: 166 FEGRTLKVNYA 176
F GR LKVN A
Sbjct: 68 FGGRNLKVNEA 78
>gi|84662766|ref|NP_034618.2| ELAV-like protein 4 isoform a [Mus musculus]
gi|354468156|ref|XP_003496533.1| PREDICTED: ELAV-like protein 4 isoform 3 [Cricetulus griseus]
gi|2500580|sp|Q61701.1|ELAV4_MOUSE RecName: Full=ELAV-like protein 4; AltName: Full=Hu-antigen D;
Short=HuD; AltName: Full=Paraneoplastic
encephalomyelitis antigen HuD
gi|603495|dbj|BAA06723.1| HuD [Mus musculus]
gi|440906869|gb|ELR57085.1| ELAV-like protein 4 [Bos grunniens mutus]
Length = 385
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 72/163 (44%), Gaps = 11/163 (6%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T E+ R+LF G + +L ++ G FV P +A A
Sbjct: 49 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 108
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + +T+KV+YA+ + NL+++ L K+L + F
Sbjct: 109 INTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQKELEQLFSQ 159
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 160 YG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 201
>gi|449296860|gb|EMC92879.1| hypothetical protein BAUCODRAFT_114866 [Baudoinia compniacensis
UAMH 10762]
Length = 326
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 78/178 (43%), Gaps = 17/178 (9%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAAL 158
S TRL N+P +T D+ F HGT E+ + + G F+ +A +
Sbjct: 12 SNTRLYLGNLPRNATKADVENHFNTHGTGEITEIKLMN-----GFGFIEYKDAMDARDVV 66
Query: 159 NNLESYEFEGRTLKVNYAKIKKK-----NPFPPVQPKPFATFN-LFIANLSFEARAKDLR 212
EF G L V +A+ + N P + P+P T + + I L FE +DL+
Sbjct: 67 PAFHGSEFMGERLVVQFARGGNRPRDGYNDAPRMAPRPRRTVHRMTITGLPFETSWQDLK 126
Query: 213 EFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA-----FQGKVIMCL 265
+F G DVV +EV + G GFV +++ + +A+ F+G + C+
Sbjct: 127 DFARQSGLDVVYSEVARERD-ASGGGKGFVEYETAQDLASAVEKLDNHDFKGSTVRCI 183
>gi|47217896|emb|CAG05018.1| unnamed protein product [Tetraodon nigroviridis]
Length = 558
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 84/181 (46%), Gaps = 14/181 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N E ++ LF ++G L I + +++G FV+ ++A A+++
Sbjct: 178 TNVYIKNFGEDMDDEKLKELFSKYGPALSIRVMTDDSGKSKGFGFVSFERHEDAQKAVDD 237
Query: 161 LESYEFEGRTLKVNYAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDL 211
+ E GR + V A+ K K F ++ + NL++ NL + L
Sbjct: 238 MNGKELNGRQVYVGRAQKKGERQNELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERL 297
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIAL 269
R+ F G + SA+V+ RS G+GFV F S + A A++ G+++ L +AL
Sbjct: 298 RKEFSPFG-TITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 354
Query: 270 S 270
+
Sbjct: 355 A 355
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 75/158 (47%), Gaps = 15/158 (9%)
Query: 106 QNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESY 164
Q +P +D F G +L I + R+ G A+V P +A AL+ +
Sbjct: 7 QTLPKREAQQD----FSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFD 62
Query: 165 EFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVS 224
+GR L++ +++ ++P + N+FI NL K L + F + G +++S
Sbjct: 63 VIKGRPLRIMWSQ---RDP----SLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILS 114
Query: 225 AEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
+V+ +N S GYGFV F++ + AE AI G ++
Sbjct: 115 CKVVCDENG--SKGYGFVHFETHEAAERAIEKMNGMLL 150
>gi|395514482|ref|XP_003761446.1| PREDICTED: ELAV-like protein 2-like isoform 1 [Sarcophilus
harrisii]
Length = 389
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 74/165 (44%), Gaps = 11/165 (6%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEAT 155
E SKT L+ +P T E++++LF G + +L ++ G FV P +A
Sbjct: 64 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 123
Query: 156 AALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFF 215
A+N L + +T+KV+YA+ + NL+++ L K+L + F
Sbjct: 124 KAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQKELEQLF 174
Query: 216 ISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 175 SQYG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 218
>gi|359450356|ref|ZP_09239809.1| hypothetical protein P20480_2530 [Pseudoalteromonas sp. BSi20480]
gi|358043838|dbj|GAA76058.1| hypothetical protein P20480_2530 [Pseudoalteromonas sp. BSi20480]
Length = 159
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 58/99 (58%), Gaps = 5/99 (5%)
Query: 87 AAVNTEQREEEYSKTR-LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKN--RNRGL 143
AA++++ EE KT+ L N+P+ + +RALFE+ G V ++ L + KN + RG
Sbjct: 50 AAMSSDVLEEAEVKTKTLYVGNLPYRANEGVVRALFEEQGKVFNVRL-LKDKNTGKRRGF 108
Query: 144 AFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKN 182
FV M D A A+ NL EF+ RTLKV AK K+++
Sbjct: 109 GFVEMAQAD-ADNAIANLNDSEFQQRTLKVREAKQKQED 146
>gi|357628443|gb|EHJ77777.1| hypothetical protein KGM_04418 [Danaus plexippus]
Length = 414
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 80/165 (48%), Gaps = 11/165 (6%)
Query: 89 VNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVT 147
+N + ++E K +L + W ++ E+++ F ++G V+D + +S+ R+RG FVT
Sbjct: 3 MNPDMDDDE--KGKLFVGGLSWETSQENLQRYFSRYGDVIDCVVMKNSESGRSRGFGFVT 60
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF-NLFIANLSFEA 206
P L N ++ +GRT+ K NP +PK + +F+ L
Sbjct: 61 FAEPSLVNVVLQN-GPHQLDGRTIDP-----KPCNPRTLQKPKRGGGYPKVFLGGLPSNI 114
Query: 207 RAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAE 251
DLR FF G V+ +++ ++S G+GF+SF+ + E
Sbjct: 115 TETDLRVFFGRYG-KVMEVVIMYDQEKKKSRGFGFLSFEDEISVE 158
>gi|315046346|ref|XP_003172548.1| hypothetical protein MGYG_05139 [Arthroderma gypseum CBS 118893]
gi|311342934|gb|EFR02137.1| hypothetical protein MGYG_05139 [Arthroderma gypseum CBS 118893]
Length = 304
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 79/161 (49%), Gaps = 10/161 (6%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALN 159
K + N+ + T D++ ++G VL + ++ +RG +V S +EA A++
Sbjct: 93 KATIYVGNILFDITAADLKEFASKYGKVLGTRIIYDTRGLSRGFGYVRFQSVEEAKKAID 152
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFF--IS 217
+ E+EGR L VN+A+I+ + P Q +P T +F+ N++ + +DL F I
Sbjct: 153 EMHLSEYEGRKLSVNFAQIELREEQPQKQMEP--TRTIFVGNIAHQITERDLHAIFDDIP 210
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ 258
+DV A PR GFV + V E+AI+ F+
Sbjct: 211 NVFDVRVAVDRRTGMPR-----GFVHAEFTDV-ESAIAGFE 245
Score = 43.9 bits (102), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Query: 184 FPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVS 243
PP +P P +++ N+ F+ A DL+EF + + V I +D S G+G+V
Sbjct: 83 LPPTRPDPEPKATIYVGNILFDITAADLKEF--ASKYGKVLGTRIIYDTRGLSRGFGYVR 140
Query: 244 FKS-----KKVAETAISAFQGK 260
F+S K + E +S ++G+
Sbjct: 141 FQSVEEAKKAIDEMHLSEYEGR 162
>gi|426387255|ref|XP_004060089.1| PREDICTED: ELAV-like protein 3 isoform 3 [Gorilla gorilla gorilla]
Length = 346
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 78/166 (46%), Gaps = 17/166 (10%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR----NRGLAFVTMGSPDEA 154
SKT L+ +P T ++ ++LF G++ DIE +++ + G FV P++A
Sbjct: 29 SKTNLIVNYLPQNMTQDEFKSLF---GSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDA 85
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
A+N L + + +T+KV+YA+ + NL+++ L K++ +
Sbjct: 86 DKAINTLNGLKLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMSQKEMEQL 136
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
F G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 137 FSQYG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 181
>gi|426387253|ref|XP_004060088.1| PREDICTED: ELAV-like protein 3 isoform 2 [Gorilla gorilla gorilla]
Length = 366
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 78/166 (46%), Gaps = 17/166 (10%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR----NRGLAFVTMGSPDEA 154
SKT L+ +P T ++ ++LF G++ DIE +++ + G FV P++A
Sbjct: 29 SKTNLIVNYLPQNMTQDEFKSLF---GSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDA 85
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
A+N L + + +T+KV+YA+ + NL+++ L K++ +
Sbjct: 86 DKAINTLNGLKLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMSQKEMEQL 136
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
F G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 137 FSQYG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 181
>gi|334321530|ref|XP_001373647.2| PREDICTED: ELAV-like protein 4 isoform 1 [Monodelphis domestica]
Length = 366
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 80/189 (42%), Gaps = 11/189 (5%)
Query: 73 SATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIEL 132
S TT P + + + + SKT L+ +P T E+ R+LF G + +L
Sbjct: 18 SNTTNGPSSNGRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKL 77
Query: 133 SMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKP 191
++ G FV P +A A+N L + +T+KV+YA+ +
Sbjct: 78 VRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS--------- 128
Query: 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAE 251
NL+++ L K+L + F G ++++ ++ S G GF+ F + AE
Sbjct: 129 IRDANLYVSGLPKTMTQKELEQLFSQYG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAE 187
Query: 252 TAISAFQGK 260
AI G+
Sbjct: 188 EAIKGLNGQ 196
>gi|224078006|ref|XP_002190593.1| PREDICTED: embryonic polyadenylate-binding protein-like
[Taeniopygia guttata]
Length = 629
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 80/167 (47%), Gaps = 14/167 (8%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
+ +R +F + G L +++ M + R++G FV +EA A+ ++ E GR L V
Sbjct: 205 DRLREIFSRFGKTLSVKVMMDNNGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRLLYVG 264
Query: 175 YAK--------IKKK-NPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ +K+K + + NL++ NL + LR+ F G + SA
Sbjct: 265 RAQKRLERQSELKRKFEQMKQERVNRYQGVNLYVKNLDDGIDDERLRKEFSPYGT-ITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIALS 270
+V+ RS G+GFV F S + A A++ G+++ L +AL+
Sbjct: 324 KVMTEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 368
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 70/143 (48%), Gaps = 11/143 (7%)
Query: 121 FEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179
F G ++ I + + R+ G A++ P +A AL+ + +GR +++ +++
Sbjct: 31 FSPAGPIMSIRVCRDVATRRSLGYAYINFQQPADAERALDTMNFEVIKGRPIRIMWSQ-- 88
Query: 180 KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
++P + N+FI NL K L + F + G +++S +V+ +N R GY
Sbjct: 89 -RDP----GLRKSGVGNVFIKNLDDSIDNKALYDTFSAFG-NILSCKVVCDENGSR--GY 140
Query: 240 GFVSFKSKKVAETAISAFQGKVI 262
GFV F++ + A AI G ++
Sbjct: 141 GFVHFETHEAATRAIETMNGMLL 163
Score = 38.5 bits (88), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ E +R F +GT+ ++ M R++G FV SP
Sbjct: 285 QERVNRYQGVNLYVKNLDDGIDDERLRKEFSPYGTITSAKV-MTEGGRSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVSTKPLYVALAQRKEE 373
>gi|328724864|ref|XP_001951157.2| PREDICTED: heterogeneous nuclear ribonucleoprotein 27C-like isoform
1 [Acyrthosiphon pisum]
Length = 442
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 77/162 (47%), Gaps = 9/162 (5%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEA 154
EE + +L + W + E ++ F ++G V+D + +S+ R+RG FVT P+
Sbjct: 8 EEDEQGKLFVGGLSWETQQESLQRYFNRYGEVIDCVVMKNSESGRSRGFGFVTFADPNNV 67
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF-NLFIANLSFEARAKDLRE 213
L N + +GRT+ K NP +PK +++ +F+ L DLR
Sbjct: 68 NVVLQN-GPHVLDGRTID-----PKPCNPRTLQKPKRSSSYPKVFLGGLPSNVTETDLRT 121
Query: 214 FFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
FF G V+ +++ ++S G+GF+SF+ + ++
Sbjct: 122 FFSRYG-KVMEVVIMYDQEKKKSRGFGFLSFEDDDAVDRCVA 162
>gi|224085260|ref|XP_002307526.1| predicted protein [Populus trichocarpa]
gi|222856975|gb|EEE94522.1| predicted protein [Populus trichocarpa]
Length = 649
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 78/171 (45%), Gaps = 11/171 (6%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N+ T++ ED++ F +G + + +++G FV SPD A AA+
Sbjct: 212 TNVYVKNLSETTSDEDLKKFFSNYGAITSAIVMKDQSGKSKGFGFVNFQSPDSAAAAVEK 271
Query: 161 LESYEFEGRTLKVNYAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDL 211
L F + V A+ K K F + + NL++ NL + + L
Sbjct: 272 LNGTTFNDKVWYVGRAQRKGEREAELKARFEQERNSRYEKLKAANLYLKNLDDKIDDEKL 331
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
+E F SE + S +V+ D S G GFV+F + + A A++ GK+I
Sbjct: 332 KELF-SEFGSITSCKVML-DQQGLSKGSGFVAFSTPEEASRALNGMNGKMI 380
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 72/144 (50%), Gaps = 10/144 (6%)
Query: 120 LFEQHGTVLDIELSMHSKNR-NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178
LF Q V+ I + R + G A+V +P +A+ A+ L G+ +++ +
Sbjct: 52 LFSQVAQVVSIRVCRDQARRASLGYAYVNFSNPQDASNAMELLNFTPLNGKAIRI---MV 108
Query: 179 KKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAG 238
++P + N+FI NL K L+E F S G V+S +V DN +S G
Sbjct: 109 SHRDP----SMRKSGHANVFIKNLDTSIDNKALQETFASFG-SVLSCKVAV-DNNGQSKG 162
Query: 239 YGFVSFKSKKVAETAISAFQGKVI 262
YGFV F++++ A++AI+ G +I
Sbjct: 163 YGFVQFENEEAAQSAINRLNGMLI 186
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 76/154 (49%), Gaps = 5/154 (3%)
Query: 106 QNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYE 165
+N+ + ++ ++ F G+VL ++++ + +++G FV + + A +A+N L
Sbjct: 126 KNLDTSIDNKALQETFASFGSVLSCKVAVDNNGQSKGYGFVQFENEEAAQSAINRLNGML 185
Query: 166 FEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSA 225
+ + V ++ PK N+++ NLS +DL++FF + + +++
Sbjct: 186 INDKEVFVGRFVRHQERIEATGSPK---FTNVYVKNLSETTSDEDLKKFFSN--YGAITS 240
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
++ D +S G+GFV+F+S A A+ G
Sbjct: 241 AIVMKDQSGKSKGFGFVNFQSPDSAAAAVEKLNG 274
Score = 37.0 bits (84), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Query: 92 EQREEEYSKTR---LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTM 148
++R Y K + L +N+ E ++ LF + G++ ++ + + ++G FV
Sbjct: 303 QERNSRYEKLKAANLYLKNLDDKIDDEKLKELFSEFGSITSCKVMLDQQGLSKGSGFVAF 362
Query: 149 GSPDEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+P+EA+ ALN + + L V A+ +++
Sbjct: 363 STPEEASRALNGMNGKMIGKKPLYVAVAQRREE 395
>gi|426215226|ref|XP_004001875.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Ovis aries]
Length = 660
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 82/167 (49%), Gaps = 14/167 (8%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E+++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIALS 270
+V+ D RS G+GFV F S + A A++ G+++ L +AL+
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Score = 44.3 bits (103), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 74/156 (47%), Gaps = 9/156 (5%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G +L ++ + +N ++G AFV + + A A+ + R +
Sbjct: 111 DNKALYDTFSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVF 169
Query: 173 VNYAKIKKKNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD 231
V K +K+ + K F N++I N E ++L+E F S+ +S +V+ D
Sbjct: 170 VGRFKSRKEREAELGAKAKEFT--NVYIKNFGEEVDDENLKELF-SQFGKTLSVKVM-RD 225
Query: 232 NPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVI 267
+S G+GFVS++ + A A+ GK I VI
Sbjct: 226 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVI 261
>gi|345493908|ref|XP_003427179.1| PREDICTED: protein alan shepard-like isoform 3 [Nasonia
vitripennis]
Length = 577
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 82/173 (47%), Gaps = 5/173 (2%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSP 151
Q+ E+ SKT L + + +T +D+ + Q+GT+ + + + N+ +G FV SP
Sbjct: 232 QQSEQLSKTNLYIRGLNQNTTDKDLVNMCSQYGTITSTKAILDKNTNKCKGYGFVDFESP 291
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKKNP--FPPVQPKPFATFNLFIANLSFEARAK 209
A A+ L + + + KV I++ + +Q + NL+IANL +
Sbjct: 292 VAAEGAVKALVAKGIQAQMAKVGIWLIRRLASVRWLCMQQQEQDPTNLYIANLPLSFKEN 351
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
D+ E +++ V+S I D +S G GF +SK+ E I F GK +
Sbjct: 352 DV-EGLLAQYGQVISTR-ILRDTSGQSKGVGFARMESKEKCEQIIQMFNGKAL 402
>gi|336371226|gb|EGN99565.1| hypothetical protein SERLA73DRAFT_159820 [Serpula lacrymans var.
lacrymans S7.3]
Length = 127
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSPDEATAALN 159
T++ N+ W++T + +R F ++G V+D I + R+RG FVT S EA AA+N
Sbjct: 3 TKVYVGNLSWSTTDDTLREAFSEYGQVVDSIVMRDRETGRSRGFGFVTFSSEQEAEAAIN 62
Query: 160 NLESYEFEGRTLKVNYAKIK 179
+L + +GR +KVN A +
Sbjct: 63 SLHEQDLDGRRIKVNLANAR 82
Score = 40.4 bits (93), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
+++ NLS+ LRE F SE VV + V+ RS G+GFV+F S++ AE AI++
Sbjct: 5 VYVGNLSWSTTDDTLREAF-SEYGQVVDSIVMRDRETGRSRGFGFVTFSSEQEAEAAINS 63
Query: 257 F 257
Sbjct: 64 L 64
>gi|109123517|ref|XP_001107360.1| PREDICTED: ELAV-like protein 3-like [Macaca mulatta]
gi|296232958|ref|XP_002761808.1| PREDICTED: ELAV-like protein 3 [Callithrix jacchus]
Length = 251
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 78/166 (46%), Gaps = 17/166 (10%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR----NRGLAFVTMGSPDEA 154
SKT L+ +P T ++ ++LF G++ DIE +++ + G FV P++A
Sbjct: 37 SKTNLIVNYLPQNMTQDEFKSLF---GSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDA 93
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
A+N L + + +T+KV+YA+ + NL+++ L K++ +
Sbjct: 94 DKAINTLNGLKLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMSQKEMEQL 144
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
F G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 145 FSQYGR-IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 189
>gi|88861399|ref|ZP_01136028.1| hypothetical protein PTD2_09597 [Pseudoalteromonas tunicata D2]
gi|88816574|gb|EAR26400.1| hypothetical protein PTD2_09597 [Pseudoalteromonas tunicata D2]
Length = 160
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 57/99 (57%), Gaps = 5/99 (5%)
Query: 87 AAVNTEQREEEYSKTR-LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKN--RNRGL 143
A+++T EEE KT+ L N+P+ + +R LFE+HG V + L + KN + RG
Sbjct: 50 ASLSTADVEEEKVKTKTLYVGNLPYRANEGIVRELFEEHGKVFSVRL-LKDKNTGKRRGF 108
Query: 144 AFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKN 182
FV + D A +N+L +EF+ RTLKV AK K ++
Sbjct: 109 GFVEVAEKDAAN-TINSLNDFEFQQRTLKVREAKQKSED 146
>gi|224081795|ref|XP_002196994.1| PREDICTED: polyadenylate-binding protein 4 [Taeniopygia guttata]
Length = 629
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 82/167 (49%), Gaps = 14/167 (8%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF ++G L +++ +++G FV+ +EA A+ + + G+ L V
Sbjct: 205 ERLKELFGKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEEANKAVEEMNGKDINGKMLFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKAERQAELKRRFEQLKQERLSRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIALS 270
+V+ D RS G+GFV F S + A A++ G+++ L +AL+
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
>gi|365812510|ref|NP_001002172.2| ELAV-like protein 2 [Danio rerio]
Length = 389
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 75/165 (45%), Gaps = 11/165 (6%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEAT 155
E SKT L+ +P T E++++LF G + +L ++ G FV P +A
Sbjct: 64 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKDAE 123
Query: 156 AALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFF 215
A+N L + +T+KV+YA+ + NL+++ L K+L + F
Sbjct: 124 KAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQKELEQLF 174
Query: 216 ISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
S+ ++++ ++ S G GF+ F + AE AI G+
Sbjct: 175 -SQFGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLNGQ 218
>gi|608543|gb|AAA96945.1| ribonucleoprotein [Xenopus laevis]
Length = 366
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 82/189 (43%), Gaps = 11/189 (5%)
Query: 73 SATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIEL 132
S T+ P +S + + + SKT L+ +P T E+ R+LF G + +L
Sbjct: 18 SNTSNGPSSNSRNCPSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKL 77
Query: 133 SMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKP 191
++ G FV P +A A+N L + +T+KV+YA+ +
Sbjct: 78 VRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS--------- 128
Query: 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAE 251
NL+++ L K+L + F S+ ++++ ++ S G GF+ F + AE
Sbjct: 129 IRDANLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAE 187
Query: 252 TAISAFQGK 260
AI G+
Sbjct: 188 EAIKGLNGQ 196
>gi|195546808|ref|NP_001091837.2| Elav protein [Bombyx mori]
gi|195542256|gb|ABM21482.2| ELAV [Bombyx mori]
Length = 301
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 76/172 (44%), Gaps = 22/172 (12%)
Query: 90 NTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMG 149
N E EE S T+L+ +P T + + +LF G + +L NRG FV
Sbjct: 13 NNEYGPEE-SPTKLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIA-----NRGYGFVEYT 66
Query: 150 SPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQP--KPFATFNLFIANLSFEAR 207
PD+A A + +TLKV++A + P ++P KP A +NL+I NL E
Sbjct: 67 RPDDAVKARKAFNGLLMQNKTLKVSHALLN-----PELKPPTKPEADWNLYICNLPNELT 121
Query: 208 AKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ L F G + N R +AG FV ++ + AE AI G
Sbjct: 122 LQGLHGLFAQFGRII---------NSRIAAGIAFVLYEHQYEAERAIQNING 164
Score = 41.2 bits (95), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 77/190 (40%), Gaps = 33/190 (17%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEF 166
N+P T + + LF Q G +++ ++ G+AFV EA A+ N+
Sbjct: 115 NLPNELTLQGLHGLFAQFGRIINSRIAA-------GIAFVLYEHQYEAERAIQNINGSTP 167
Query: 167 EG--RTLKVNYAK----------IKKKNPFPPVQPKPFA-------------TFNLFIAN 201
G L V YA V+P + T++++I N
Sbjct: 168 PGFLHPLTVKYANKSNPHKHKNNNNTFTKNTIVRPYQWINHISAVGEHNSPNTWSIYIYN 227
Query: 202 LSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKV 261
++ E L + F G +VS ++I +S GYGFV+ ++ A AI A G +
Sbjct: 228 IALEVEELTLWQLFGPYG-AIVSVKIIRDHQTNKSKGYGFVTMRNYDQAAMAIQALNGYL 286
Query: 262 IMCLVIALSY 271
+ +++S+
Sbjct: 287 LHGQPLSVSF 296
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 120 LFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178
LF +G ++ +++ H N+++G FVTM + D+A A+ L Y G+ L V++
Sbjct: 240 LFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYDQAAMAIQALNGYLLHGQPLSVSFKTQ 299
Query: 179 KK 180
K+
Sbjct: 300 KR 301
>gi|402590718|gb|EJW84648.1| polyadenylate-binding protein 4, partial [Wuchereria bancrofti]
Length = 519
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 80/170 (47%), Gaps = 17/170 (10%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E + LF + G + + + + +++G FV +P++A A+ + YE G K+
Sbjct: 77 EALEKLFSKFGKITSAAVMVDADGKSKGFGFVAFENPEDAEKAVTEMHEYELPGTERKLY 136
Query: 175 YAKIKKKNPFPP-----------VQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVV 223
+ +KKN + + + NL++ NL L++ F + G +
Sbjct: 137 VCRAQKKNERSAELKRRYEQQKVERMQRYQGVNLYVKNLDDTVNDDILKQNFEAYG-KIT 195
Query: 224 SAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC---LVIALS 270
SA+V+ DN RS G+GFV F+ A A++ GK +MC L +AL+
Sbjct: 196 SAKVMCDDNG-RSKGFGFVCFEKPDEATKAVTEMNGK-MMCTKPLYVALA 243
Score = 37.4 bits (85), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 33/69 (47%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPD 152
+R + Y L +N+ T + ++ FE +G + ++ R++G FV PD
Sbjct: 160 ERMQRYQGVNLYVKNLDDTVNDDILKQNFEAYGKITSAKVMCDDNGRSKGFGFVCFEKPD 219
Query: 153 EATAALNNL 161
EAT A+ +
Sbjct: 220 EATKAVTEM 228
>gi|425767261|gb|EKV05835.1| Pre-RNA splicing factor Srp2, putative [Penicillium digitatum
PHI26]
gi|425780059|gb|EKV18081.1| Pre-RNA splicing factor Srp2, putative [Penicillium digitatum Pd1]
Length = 303
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 82/182 (45%), Gaps = 24/182 (13%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATA 156
E S TRL N+P T DI F HG+ E+ + + G F+ +A
Sbjct: 3 EVSSTRLYLGNLPRNVTKSDIEEHFSSHGSGKITEIKLMN-----GFGFIEYDDQLDARD 57
Query: 157 ALNNLESYEFEGRTLKVNYAK-IKKKNPF--PPVQ---PKPFAT-FNLFIANLSFEARAK 209
+ +F+G L V +A+ ++K F PP + P+P T F + I+ L E +
Sbjct: 58 IVPAFHGSDFKGERLTVQFARGPRRKEAFQGPPDRNALPRPRRTMFRMQISGLP-ETSWQ 116
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA-----FQGKVIMC 264
DL++F G DVV +E R G GFV F++ +TA+ F+G V+ C
Sbjct: 117 DLKDFARQSGLDVVYSETG------REQGRGFVEFETASDLKTAVEKLDQREFKGSVVSC 170
Query: 265 LV 266
+
Sbjct: 171 VA 172
>gi|49355761|ref|NP_001411.2| ELAV-like protein 3 isoform 1 [Homo sapiens]
gi|21264436|sp|Q14576.3|ELAV3_HUMAN RecName: Full=ELAV-like protein 3; AltName: Full=Hu-antigen C;
Short=HuC; AltName: Full=Paraneoplastic cerebellar
degeneration-associated antigen; AltName:
Full=Paraneoplastic limbic encephalitis antigen 21
gi|119604626|gb|EAW84220.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu
antigen C), isoform CRA_a [Homo sapiens]
gi|380783929|gb|AFE63840.1| ELAV-like protein 3 isoform 1 [Macaca mulatta]
Length = 367
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 78/166 (46%), Gaps = 17/166 (10%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR----NRGLAFVTMGSPDEA 154
SKT L+ +P T ++ ++LF G++ DIE +++ + G FV P++A
Sbjct: 37 SKTNLIVNYLPQNMTQDEFKSLF---GSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDA 93
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
A+N L + + +T+KV+YA+ + NL+++ L K++ +
Sbjct: 94 DKAINTLNGLKLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMSQKEMEQL 144
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
F G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 145 FSQYG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 189
>gi|426387251|ref|XP_004060087.1| PREDICTED: ELAV-like protein 3 isoform 1 [Gorilla gorilla gorilla]
gi|355703162|gb|EHH29653.1| Hu-antigen C [Macaca mulatta]
Length = 339
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 78/166 (46%), Gaps = 17/166 (10%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR----NRGLAFVTMGSPDEA 154
SKT L+ +P T ++ ++LF G++ DIE +++ + G FV P++A
Sbjct: 29 SKTNLIVNYLPQNMTQDEFKSLF---GSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDA 85
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
A+N L + + +T+KV+YA+ + NL+++ L K++ +
Sbjct: 86 DKAINTLNGLKLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMSQKEMEQL 136
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
F G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 137 FSQYG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 181
>gi|334312764|ref|XP_003339775.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
1-like [Monodelphis domestica]
Length = 614
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 89/195 (45%), Gaps = 19/195 (9%)
Query: 92 EQREEEYSK-----TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFV 146
++RE E T + +N E ++ LF Q G L +++ + ++RG FV
Sbjct: 177 QEREAELGARALEFTNIYVKNFEGDMDDECLQELFSQFGKTLSVKVMVDENGQSRGFGFV 236
Query: 147 TMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK------KNPFPPVQPK---PFATFNL 197
+EA A++N+ E GR L V A+ + K F ++ + + NL
Sbjct: 237 NFEKHEEAQKAVSNMNGKELGGRVLYVGRAQKRSERQSELKRRFEQMKQERVNRYQGVNL 296
Query: 198 FIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAF 257
++ NL + LR+ F G + SA+V+ S G+GFV F S + A A++
Sbjct: 297 YVKNLDDIIDDEKLRKEFSPYGV-ITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEM 353
Query: 258 QGKVIMC--LVIALS 270
G+++ L +AL+
Sbjct: 354 NGRIVSTKPLYVALA 368
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 76/155 (49%), Gaps = 7/155 (4%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G +L ++ + +N +RG FV + + A A+N + R +
Sbjct: 111 DNKALYDTFSTFGNILSCKV-VCDENGSRGFGFVHFETHEAANQAINTMNGMLLNDRKVF 169
Query: 173 VNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDN 232
V + K +++ + + N+++ N + + L+E F S+ +S +V+ +N
Sbjct: 170 VGHFKSRQERE-AELGARALEFTNIYVKNFEGDMDDECLQELF-SQFGKTLSVKVMVDEN 227
Query: 233 PRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVI 267
+S G+GFV+F+ + A+ A+S GK + V+
Sbjct: 228 G-QSRGFGFVNFEKHEEAQKAVSNMNGKELGGRVL 261
>gi|242080305|ref|XP_002444921.1| hypothetical protein SORBIDRAFT_07g001490 [Sorghum bicolor]
gi|241941271|gb|EES14416.1| hypothetical protein SORBIDRAFT_07g001490 [Sorghum bicolor]
Length = 484
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 73/150 (48%), Gaps = 19/150 (12%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYE 165
+P T +D+R L E G + ++ L+ N N+G AFVT D A A+ +++ E
Sbjct: 125 GLPRDITEDDLRELCEPLGEIYEVRLTKDKDTNENKGFAFVTFTDKDAAQRAIEDVQDRE 184
Query: 166 FEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSA 225
++GRTL+ + ++ K + LFI N+ ++L +G VV+
Sbjct: 185 YKGRTLRCSLSQAKHR---------------LFIGNVPKGLSEEELTNIIKGKGPGVVNI 229
Query: 226 EVIFHD--NPRRSAGYGFVSFKSKKVAETA 253
E +F D +P R+ G+ FV + + AE A
Sbjct: 230 E-MFKDQHDPNRNRGFLFVEYYNHACAEYA 258
Score = 45.4 bits (106), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 11/95 (11%)
Query: 83 SSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRG 142
SS+AA V T + +N+P + E I+ LF++HG V I L R
Sbjct: 288 SSAAAQVKT-----------IYVKNLPENVSKEKIKDLFDKHGEVTKIVLPPAKAGHKRD 336
Query: 143 LAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177
FV A A+ E YE +G+ L+V+ AK
Sbjct: 337 FGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAK 371
Score = 37.7 bits (86), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 85/211 (40%), Gaps = 29/211 (13%)
Query: 80 FVDSSSAAAVNTEQREEEY-----------SKTRLVAQNVPWTSTHEDIRALFEQHG-TV 127
F D +A + ++ EY +K RL NVP + E++ + + G V
Sbjct: 167 FTDKDAAQRAIEDVQDREYKGRTLRCSLSQAKHRLFIGNVPKGLSEEELTNIIKGKGPGV 226
Query: 128 LDIEL--SMHSKNRNRGLAFVTMGSPDEATAALNNLESYEF--EGRTLKVNYAKIKKKNP 183
++IE+ H NRNRG FV + A A L S F +G L V++A+
Sbjct: 227 VNIEMFKDQHDPNRNRGFLFVEYYNHACAEYARLKLSSRNFKVDGSQLTVSWAE------ 280
Query: 184 FPPVQPKPFATF----NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
P Q P + +++ NL + +++ F G V+ V+ +
Sbjct: 281 -PKGQTDPSSAAAQVKTIYVKNLPENVSKEKIKDLFDKHGE--VTKIVLPPAKAGHKRDF 337
Query: 240 GFVSFKSKKVAETAISAFQGKVIMCLVIALS 270
GFV F + A A+ + I V+ +S
Sbjct: 338 GFVHFAERSSALKAVKGSEKYEIDGQVLEVS 368
>gi|71051886|gb|AAH99348.1| ElrD protein, partial [Xenopus laevis]
Length = 360
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 81/189 (42%), Gaps = 11/189 (5%)
Query: 73 SATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIEL 132
S T+ P +S + + + SKT L+ +P T E+ R+LF G + +L
Sbjct: 12 SNTSNGPSSNSRNCPSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKL 71
Query: 133 SMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKP 191
++ G FV P +A A+N L + +T+KV+YA+ +
Sbjct: 72 VRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS--------- 122
Query: 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAE 251
NL+++ L K+L + F G ++++ ++ S G GF+ F + AE
Sbjct: 123 IRDANLYVSGLPKTMTQKELEQLFSQYGR-IITSRILVDQVTGVSRGVGFIRFDKRIEAE 181
Query: 252 TAISAFQGK 260
AI G+
Sbjct: 182 EAIKGLNGQ 190
>gi|365986018|ref|XP_003669841.1| hypothetical protein NDAI_0D02840 [Naumovozyma dairenensis CBS 421]
gi|343768610|emb|CCD24598.1| hypothetical protein NDAI_0D02840 [Naumovozyma dairenensis CBS 421]
Length = 426
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 77/169 (45%), Gaps = 10/169 (5%)
Query: 110 WTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEG 168
W+ E ++ FE G V+ + +R+RG +V A A+ ++ E +G
Sbjct: 180 WSIDDEWLKKEFEHIGGVVGARVIYERGTDRSRGYGYVDFEDKSYAEKAIQEMQGKEIDG 239
Query: 169 RTLKVNYAKIK------KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDV 222
R + V+ + K + F V +P T LF+ NLSF A ++ E F G ++
Sbjct: 240 RPINVDMSTSKPAGGNDRAKKFGDVPSEPSDT--LFLGNLSFNADKDNIYETFSKYG-EI 296
Query: 223 VSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271
+S + H + G+G+V F + + A+ A+ QG+ I + L Y
Sbjct: 297 ISVRIPTHPETEQPKGFGYVQFSNIEDAKKALEGLQGEYIDNRAVRLDY 345
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
+F+ LS+ + L++ F G VV A VI+ RS GYG+V F+ K AE AI
Sbjct: 173 IFVGRLSWSIDDEWLKKEFEHIGG-VVGARVIYERGTDRSRGYGYVDFEDKSYAEKAIQE 231
Query: 257 FQGKVI 262
QGK I
Sbjct: 232 MQGKEI 237
>gi|332374002|gb|AEE62142.1| unknown [Dendroctonus ponderosae]
Length = 634
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 95/202 (47%), Gaps = 24/202 (11%)
Query: 92 EQREEEYSK-----TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFV 146
++RE+E + T + +N + E +R +FE+ G + ++ +++G FV
Sbjct: 178 KEREKELGEKAKLFTNVYVKNFGEDLSEEQLRNMFEKFGKITSYKVMSKDDGKSKGFGFV 237
Query: 147 TMGSPDEATAALNNLESYEF-EGRTLKVNYAKIKK------KNPFPPVQPKPFATF---N 196
SP+ A A++ L E EG+ L V A+ K K F ++ + + N
Sbjct: 238 AFESPEAAETAVDALNGKELVEGKPLYVGRAQKKAERQQELKRRFEALKMERLNRYQGVN 297
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNP------RRSAGYGFVSFKSKKVA 250
L++ NL + LR+ F G + SA+V+ +N RS G+GFV F S + A
Sbjct: 298 LYVKNLDDTIDDERLRKEFAPFGT-ITSAKVMIEENKTESFITTRSKGFGFVCFSSPEEA 356
Query: 251 ETAISAFQGKVIMC--LVIALS 270
A++ G+++ L +AL+
Sbjct: 357 TKAVTEMNGRIVGSKPLYVALA 378
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 66/143 (46%), Gaps = 3/143 (2%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L +++ ++G FV + + A ++ + G+ + V I +
Sbjct: 119 FSAFGNILSCKVAQDENGTSKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRF-IPR 177
Query: 181 KNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYG 240
K + K N+++ N + + LR F E + +++ + + +S G+G
Sbjct: 178 KEREKELGEKAKLFTNVYVKNFGEDLSEEQLRNMF--EKFGKITSYKVMSKDDGKSKGFG 235
Query: 241 FVSFKSKKVAETAISAFQGKVIM 263
FV+F+S + AETA+ A GK ++
Sbjct: 236 FVAFESPEAAETAVDALNGKELV 258
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 68/143 (47%), Gaps = 10/143 (6%)
Query: 121 FEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179
F G VL I + R+ G A+V P +A AL+ + GR +++ ++
Sbjct: 31 FSSAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALDTMNFDLIRGRPIRIMWS--- 87
Query: 180 KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+++P + N+FI NL K + + F + G +++S +V +N S GY
Sbjct: 88 QRDP----SLRKSGVGNVFIKNLDRSIDNKAMYDTFSAFG-NILSCKVAQDENG-TSKGY 141
Query: 240 GFVSFKSKKVAETAISAFQGKVI 262
GFV F++++ A +I G ++
Sbjct: 142 GFVHFETEEAANKSIEKVNGMLL 164
>gi|242005325|ref|XP_002423520.1| protein elav, putative [Pediculus humanus corporis]
gi|212506634|gb|EEB10782.1| protein elav, putative [Pediculus humanus corporis]
Length = 373
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 81/190 (42%), Gaps = 35/190 (18%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTV-----------------LDIELSMHSK-- 137
E SKT L+ +P T T E+IR+LF G V IE+ +
Sbjct: 37 EESKTNLIVNYLPQTMTQEEIRSLFSSIGEVESCKLIRDKAGLTFLLFFRIEMGGGGRER 96
Query: 138 ---NR---NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKP 191
NR + G FV P++A A+N L + +T+KV++A+ ++
Sbjct: 97 GRINRILFSLGYGFVNYQRPEDAEKAINTLNGLRLQNKTIKVSFARPSSES--------- 147
Query: 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAE 251
NL+++ L +DL F G ++++ ++ + S G GF+ F + AE
Sbjct: 148 IKGANLYVSGLPKNMTQQDLESLFSPYG-RIITSRILCDNITGLSKGVGFIRFDQRMEAE 206
Query: 252 TAISAFQGKV 261
AIS G +
Sbjct: 207 RAISELNGSI 216
>gi|194207476|ref|XP_001492529.2| PREDICTED: ELAV-like protein 4 isoform 2 [Equus caballus]
Length = 383
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 83/189 (43%), Gaps = 11/189 (5%)
Query: 73 SATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIEL 132
S+T+ P ++ + + + SKT L+ +P T E+ R+LF G + +L
Sbjct: 35 SSTSNGPSSNNRNCPSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKL 94
Query: 133 SMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKP 191
++ G FV P +A A+N L + +T+KV+YA+ +
Sbjct: 95 VRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS--------- 145
Query: 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAE 251
NL+++ L K+L + F S+ ++++ ++ S G GF+ F + AE
Sbjct: 146 IRDANLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAE 204
Query: 252 TAISAFQGK 260
AI G+
Sbjct: 205 EAIKGLNGQ 213
>gi|268581545|ref|XP_002645756.1| C. briggsae CBR-PAB-2 protein [Caenorhabditis briggsae]
Length = 685
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 80/170 (47%), Gaps = 15/170 (8%)
Query: 114 HEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKV 173
E + +F ++G + + + + +G FV PD A A+++L EG LK+
Sbjct: 246 QEKLTKMFSKYGEITSAVVMTDADGKPKGFGFVAYADPDAAQKAVDDLNEKTLEGTDLKL 305
Query: 174 NYAKIKKKN-----------PFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDV 222
+ + +KK+ + + + NL++ N+ E + LR F S G +
Sbjct: 306 SVCRAQKKSERTADLKRKYEALKQERVQRYQGVNLYVKNIDEELTDEGLRAHFASFGT-I 364
Query: 223 VSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIALS 270
SA+V+ +N RS G+GFV F+ + A A++ K++ L +AL+
Sbjct: 365 TSAKVMVDEN-GRSKGFGFVCFEKPEEATAAVTEMNSKMMGSKPLYVALA 413
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 44/89 (49%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R + Y L +N+ T E +RA F GT+ ++ + R++G FV P
Sbjct: 329 QERVQRYQGVNLYVKNIDEELTDEGLRAHFASFGTITSAKVMVDENGRSKGFGFVCFEKP 388
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKK 180
+EATAA+ + S + L V A+ K+
Sbjct: 389 EEATAAVTEMNSKMMGSKPLYVALAQRKE 417
Score = 43.9 bits (102), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 69/143 (48%), Gaps = 10/143 (6%)
Query: 121 FEQHGTVLDIELSMHSKNR-NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179
F G VL I + + +R + G A+V P +A AL+ + GR +++ +++
Sbjct: 72 FSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDTMNFETIHGRPMRIMWSQ-- 129
Query: 180 KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
++P + N+FI NL K + + F G +++S +V D S GY
Sbjct: 130 -RDP----AARRAGNGNIFIKNLDRVIDNKSIYDTFSLFG-NILSCKVA-ADEDGSSRGY 182
Query: 240 GFVSFKSKKVAETAISAFQGKVI 262
GFV F++++ A+ AI G ++
Sbjct: 183 GFVHFETEESAQIAIEKVNGMLL 205
>gi|410967448|ref|XP_003990231.1| PREDICTED: ELAV-like protein 4 [Felis catus]
Length = 494
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 72/163 (44%), Gaps = 11/163 (6%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T E+ R+LF G + +L ++ G FV P +A A
Sbjct: 61 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 120
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + +T+KV+YA+ + NL+++ L K+L + F
Sbjct: 121 INTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQKELEQLFSQ 171
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 172 YG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 213
>gi|312371659|gb|EFR19788.1| hypothetical protein AND_21810 [Anopheles darlingi]
Length = 440
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 82/179 (45%), Gaps = 12/179 (6%)
Query: 95 EEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEA 154
EE Y KT V N+ + T E + LF Q GTV ++ + N AF+ S A
Sbjct: 3 EESYPKTLYVG-NLDTSVTEELLCTLFSQMGTVKSCKIIREASNDP--YAFIEYASHTSA 59
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFAT--FNLFIANLSFEARAKDLR 212
AL + F + +KVN+A P QPK + +++F+ +LS E + LR
Sbjct: 60 QTALAAMNKRFFLKKEIKVNWATS------PGNQPKTDTSQHYHIFVGDLSPEIETETLR 113
Query: 213 EFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271
E F G ++ + ++ +S GY FVSF K AE AI G+ + I ++
Sbjct: 114 EAFAPFG-EISNCRIVRDPQTLKSRGYAFVSFVKKAEAENAIQMMNGQWLGSRSIRTNW 171
>gi|296484904|tpg|DAA27019.1| TPA: ELAV-like 2-like [Bos taurus]
Length = 620
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 84/181 (46%), Gaps = 13/181 (7%)
Query: 81 VDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNR 139
++++ ++ V++ E+ SKT L+ +P T E++++LF G + +L +
Sbjct: 295 INNNCSSPVDSGNTED--SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQ 352
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI 199
+ G FV P +A A+N L + +T+KV+YA+ + NL++
Sbjct: 353 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYV 403
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ L K+L + F G ++++ ++ S G GF+ F + AE AI G
Sbjct: 404 SGLPKTMTQKELEQLFSQYG-RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 462
Query: 260 K 260
+
Sbjct: 463 Q 463
>gi|351694381|gb|EHA97299.1| ELAV-like protein 3, partial [Heterocephalus glaber]
Length = 344
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 78/166 (46%), Gaps = 17/166 (10%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR----NRGLAFVTMGSPDEA 154
SKT L+ +P T ++ ++LF G++ DIE +++ + G FV P++A
Sbjct: 34 SKTNLIVNYLPQNMTQDEFKSLF---GSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDA 90
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
A+N L + + +T+KV+YA+ + NL+++ L K++ +
Sbjct: 91 DKAINTLNGLKLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMSQKEMEQL 141
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
F G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 142 FSQYG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 186
>gi|359067089|ref|XP_002688919.2| PREDICTED: ELAV-like protein 3 [Bos taurus]
Length = 408
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 78/166 (46%), Gaps = 17/166 (10%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR----NRGLAFVTMGSPDEA 154
SKT L+ +P T ++ ++LF G++ DIE +++ + G FV P++A
Sbjct: 85 SKTNLIVNYLPQNMTQDEFKSLF---GSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDA 141
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
A+N L + + +T+KV+YA+ + NL+++ L K++ +
Sbjct: 142 DKAINTLNGLKLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMSQKEMEQL 192
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
F G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 193 FSQYGR-IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 237
>gi|328772428|gb|EGF82466.1| hypothetical protein BATDEDRAFT_86274 [Batrachochytrium
dendrobatidis JAM81]
Length = 586
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 75/168 (44%), Gaps = 11/168 (6%)
Query: 94 REEEY----SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMG 149
R E Y S L N+ ++ ++++ LF G E+ S R+RG FVTM
Sbjct: 404 RSENYAMKNSGITLFVGNLVYSVIWQELKDLFRSVGIPTKAEIVTSSSGRSRGFGFVTMA 463
Query: 150 SPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAK 209
+ ++A A+ L EF GR ++V K P+ + + NL F R +
Sbjct: 464 TQEDANKAIKELNGTEFRGRKIEVRLDKFGSHESRGI--PEALQGTQVLVGNLPFHMRWQ 521
Query: 210 DLREFF--ISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
DL++ F ++E A V RS G G V F++++ A A+S
Sbjct: 522 DLKDIFRCVAE---PQLANVRIDPETGRSQGVGTVRFQTEEDATRALS 566
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 81/200 (40%), Gaps = 43/200 (21%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T L N+P+ T +D++ LF Q G V + R+RG VTM +P++A A+
Sbjct: 280 TTLFVGNLPFIITWQDLKDLFRQAGDVAVSHIPTDGSGRSRGFGIVTMTTPEDAAKAIQM 339
Query: 161 LESYEFEGRTLKV------------------NYAKIKKKNPFPPVQ-------------- 188
Y GR L+V ++ + +P P Q
Sbjct: 340 FNRYILSGRQLEVREDRHVFKASKEGEHHEHSHRTTRLDSPAPLTQYGGQHDTGHIRHEH 399
Query: 189 -----PKPFATFN----LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ +A N LF+ NL + ++L++ F S G + + I + RS G+
Sbjct: 400 GYGNRSENYAMKNSGITLFVGNLVYSVIWQELKDLFRSVG--IPTKAEIVTSSSGRSRGF 457
Query: 240 GFVSFKSKKVAETAISAFQG 259
GFV+ +++ A AI G
Sbjct: 458 GFVTMATQEDANKAIKELNG 477
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 190 KPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKV 249
+P A +FI NL F ++KDL++ F ++ V S +V+ H N RS G+G V + ++
Sbjct: 14 QPVAGRQVFIGNLPFTMQSKDLKDVF-NKTAGVTSVKVMSHGNG-RSRGFGLVYCDTPEI 71
Query: 250 AETAISAFQG 259
A++ I+ FQG
Sbjct: 72 AQSIITQFQG 81
Score = 44.7 bits (104), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 40/76 (52%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEF 166
N+P+T +D++ +F + V +++ H R+RG V +P+ A + + + E
Sbjct: 25 NLPFTMQSKDLKDVFNKTAGVTSVKVMSHGNGRSRGFGLVYCDTPEIAQSIITQFQGLEL 84
Query: 167 EGRTLKVNYAKIKKKN 182
+GR ++V ++ + N
Sbjct: 85 KGRQIEVRIDRVNRSN 100
>gi|28879001|gb|AAH48159.1| Elavl4 protein [Mus musculus]
Length = 412
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 72/163 (44%), Gaps = 11/163 (6%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T E+ R+LF G + +L ++ G FV P +A A
Sbjct: 49 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 108
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + +T+KV+YA+ + NL+++ L K+L + F
Sbjct: 109 INTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQKELEQLFSQ 159
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 160 YG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 201
>gi|410904819|ref|XP_003965889.1| PREDICTED: polyadenylate-binding protein 1-like [Takifugu rubripes]
Length = 636
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 14/167 (8%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF ++G L I + +++G FV+ ++A A++++ E GR + V
Sbjct: 205 EKLKELFSKYGPALSIRVMTDDGGKSKGFGFVSFERHEDAQKAVDDMNGKELNGRQVYVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + NL++ NL + LR+ F G + SA
Sbjct: 265 RAQKKGERQNELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLRKEFSPFGT-ITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIALS 270
+V+ RS G+GFV F S + A A++ G+++ L +AL+
Sbjct: 324 KVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 70/143 (48%), Gaps = 11/143 (7%)
Query: 121 FEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179
F G +L I + R+ G A+V P +A AL+ + +GR L++ +++
Sbjct: 31 FSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGRPLRIMWSQ-- 88
Query: 180 KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
++P + N+FI NL K L + F + G +++S +V+ +N S GY
Sbjct: 89 -RDP----SLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCKVVCDEN--GSKGY 140
Query: 240 GFVSFKSKKVAETAISAFQGKVI 262
GFV F++ + AE AI G ++
Sbjct: 141 GFVHFETHEAAERAIEKMNGMLL 163
>gi|366987527|ref|XP_003673530.1| hypothetical protein NCAS_0A05890 [Naumovozyma castellii CBS 4309]
gi|342299393|emb|CCC67147.1| hypothetical protein NCAS_0A05890 [Naumovozyma castellii CBS 4309]
Length = 415
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 77/170 (45%), Gaps = 11/170 (6%)
Query: 110 WTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAALNNLESYEFEG 168
W+ E ++ FE G V+ + M +R+RG +V A A+ ++ E +G
Sbjct: 171 WSIDDEWLKKEFEHIGGVVSARVIMERGTDRSRGYGYVDFEDKSYAEKAIKEMQGKEIDG 230
Query: 169 RTLKVNYAKIK-------KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWD 221
R + V+ + K + F V +P T LF+ NLSF A + E F G +
Sbjct: 231 REINVDMSTSKPAAGNNDRAKKFGDVPSEPSET--LFLGNLSFNADRDAISELFSKYG-E 287
Query: 222 VVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271
++S + H + G+G+V + + + A+ A+ QG+ I + L Y
Sbjct: 288 IISVRIPTHPETEQPKGFGYVQYTNVEDAKKALEGLQGEYIDNRPVRLDY 337
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
+F+ LS+ + L++ F G VVSA VI RS GYG+V F+ K AE AI
Sbjct: 164 IFVGRLSWSIDDEWLKKEFEHIGG-VVSARVIMERGTDRSRGYGYVDFEDKSYAEKAIKE 222
Query: 257 FQGKVIMCLVIALS 270
QGK I I +
Sbjct: 223 MQGKEIDGREINVD 236
>gi|327271181|ref|XP_003220366.1| PREDICTED: ELAV-like protein 4-like [Anolis carolinensis]
Length = 410
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 72/163 (44%), Gaps = 11/163 (6%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T E+ R+LF G + +L ++ G FV P +A A
Sbjct: 88 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 147
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + +T+KV+YA+ + NL+++ L K+L + F
Sbjct: 148 INTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQKELEQLFSQ 198
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 199 YG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 240
>gi|307165845|gb|EFN60208.1| Polyadenylate-binding protein 1 [Camponotus floridanus]
Length = 635
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 93/196 (47%), Gaps = 20/196 (10%)
Query: 92 EQREEEYSK-----TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFV 146
++RE+E + T + +N T + ++ +FE++GT+ ++ ++RG FV
Sbjct: 178 KEREKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMSKDDGKSRGFGFV 237
Query: 147 TMGSPDEATAALNNLESYEF-EGRTLKVNYAKIKK------KNPFPPVQPKPFATF---N 196
PD A A+ L + EG+ + V A+ K K F ++ + + N
Sbjct: 238 AFEDPDAAEQAVLELNGKDISEGKCMYVGRAQKKAERQQELKRKFEQLKIERLNRYQGVN 297
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
L++ NL + LR+ F G + SA+V+ + RS G+GFV F + A A++
Sbjct: 298 LYVKNLDDTIDDERLRKEFTPFGT-ITSAKVMMEEG--RSKGFGFVCFSQPEEATKAVTE 354
Query: 257 FQGKVIMC--LVIALS 270
G+++ L +AL+
Sbjct: 355 MNGRIVGSKPLYVALA 370
Score = 44.3 bits (103), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 74/155 (47%), Gaps = 15/155 (9%)
Query: 114 HEDIR--ALFEQ---HGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFE 167
H DI LFE+ G VL I + R+ G A+V P +A AL+ + +
Sbjct: 19 HTDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDMIK 78
Query: 168 GRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEV 227
GR +++ +++ ++P + N+FI NL K + + F + G +++S +V
Sbjct: 79 GRPIRIMWSQ---RDP----SLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFG-NILSCKV 130
Query: 228 IFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
D S GYGFV F++++ A +I G ++
Sbjct: 131 A-QDESGASKGYGFVHFETEEAANKSIDKVNGMLL 164
>gi|148223119|ref|NP_001088471.1| uncharacterized protein LOC495336 [Xenopus laevis]
gi|54311231|gb|AAH84798.1| LOC495336 protein [Xenopus laevis]
Length = 711
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 88/181 (48%), Gaps = 14/181 (7%)
Query: 91 TEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGS 150
++ R+++++ + +N P + E ++ +F + G + + S+ +++G FV +
Sbjct: 173 SQNRKQKFNN--IYVKNFPPETDDEKLKEMFTEFGEIKSACVMKDSEGKSKGFGFVCYLN 230
Query: 151 PDEATAALNNLESYEFEGRTLKVNYA----------KIKKKNPFPPVQPKPFATFNLFIA 200
P+ A AA+ + E GR+L + A K++ + + K + NL++
Sbjct: 231 PEHAEAAVAAMHGKEIGGRSLYASRAQRKEERQEELKLRLEKQKAERRSKYVSNVNLYVK 290
Query: 201 NLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
NL E + L+E F G +S+ + D+ RS G+GFV F + + A A++ G+
Sbjct: 291 NLDDEIDDERLKEIFSKYG--PISSAKVMTDSNNRSKGFGFVCFTNPEQATKAVTEANGR 348
Query: 261 V 261
V
Sbjct: 349 V 349
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 73/159 (45%), Gaps = 9/159 (5%)
Query: 106 QNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYE 165
+N+ T +++ F G +L +++M ++G FV + + A A+ + +
Sbjct: 95 KNLAKTIEQKELYDTFSLFGRILSCKIAMDENGNSKGYGFVHFENEECAKRAIQKVNNMS 154
Query: 166 FEGRTLKVN--YAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVV 223
G+ + V + +K+ Q + N+++ N E + L+E F G +
Sbjct: 155 ICGKVVYVGNFIPRSDRKS-----QNRKQKFNNIYVKNFPPETDDEKLKEMFTEFGE--I 207
Query: 224 SAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
+ + D+ +S G+GFV + + + AE A++A GK I
Sbjct: 208 KSACVMKDSEGKSKGFGFVCYLNPEHAEAAVAAMHGKEI 246
>gi|291398930|ref|XP_002715153.1| PREDICTED: ELAV-like 4-like isoform 4 [Oryctolagus cuniculus]
Length = 402
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 73/163 (44%), Gaps = 11/163 (6%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T E+ R+LF G + +L ++ G FV P +A A
Sbjct: 80 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 139
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + +T+KV+YA+ + NL+++ L K+L + F S
Sbjct: 140 INTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQKELEQLF-S 189
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
+ ++++ ++ S G GF+ F + AE AI G+
Sbjct: 190 QYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 232
>gi|436841131|ref|YP_007325509.1| putative RNA-binding protein rbpE [Desulfovibrio hydrothermalis
AM13 = DSM 14728]
gi|432170037|emb|CCO23408.1| putative RNA-binding protein rbpE [Desulfovibrio hydrothermalis
AM13 = DSM 14728]
Length = 87
Score = 60.8 bits (146), Expect = 6e-07, Method: Composition-based stats.
Identities = 33/82 (40%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIEL-SMHSKNRNRGLAFVTMGSPDEATAALNNL 161
L N+PW++T ED+RA FE G V ++L R RG FV M + A A+ L
Sbjct: 5 LYVGNLPWSATEEDVRAAFEAFGEVTSVKLIEDRETGRPRGFGFVEMDD-NGAHDAIEAL 63
Query: 162 ESYEFEGRTLKVNYAKIKKKNP 183
+ +F GR LKVN AK +++ P
Sbjct: 64 DGKDFGGRNLKVNEAKAREERP 85
>gi|395853072|ref|XP_003799044.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Otolemur
garnettii]
Length = 633
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 81/167 (48%), Gaps = 14/167 (8%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIALS 270
+V+ D RS G+GFV F S + A A++ G+++ L +AL+
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 73/156 (46%), Gaps = 9/156 (5%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G +L ++ + +N ++G AFV + + A A+ + R +
Sbjct: 111 DNKALYDTFSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVF 169
Query: 173 VNYAKIKKKNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD 231
V K +K+ + K F N++I N E + L+E F S+ +S +V+ D
Sbjct: 170 VGRFKSRKEREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVM-RD 225
Query: 232 NPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVI 267
+S G+GFVS++ + A A+ GK I VI
Sbjct: 226 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVI 261
>gi|338721952|ref|XP_003364452.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Equus
caballus]
Length = 631
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 81/167 (48%), Gaps = 14/167 (8%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIALS 270
+V+ D RS G+GFV F S + A A++ G+++ L +AL+
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 73/156 (46%), Gaps = 9/156 (5%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G +L ++ + +N ++G AFV + + A A+ + R +
Sbjct: 111 DNKALYDTFSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVF 169
Query: 173 VNYAKIKKKNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD 231
V K +K+ + K F N++I N E + L+E F S+ +S +V+ D
Sbjct: 170 VGRFKSRKEREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVM-RD 225
Query: 232 NPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVI 267
+S G+GFVS++ + A A+ GK I VI
Sbjct: 226 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVI 261
>gi|296485880|tpg|DAA27995.1| TPA: ELAV-like protein 3-like [Bos taurus]
Length = 407
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 78/166 (46%), Gaps = 17/166 (10%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR----NRGLAFVTMGSPDEA 154
SKT L+ +P T ++ ++LF G++ DIE +++ + G FV P++A
Sbjct: 84 SKTNLIVNYLPQNMTQDEFKSLF---GSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDA 140
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
A+N L + + +T+KV+YA+ + NL+++ L K++ +
Sbjct: 141 DKAINTLNGLKLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMSQKEMEQL 191
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
F G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 192 FSQYGR-IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 236
>gi|410966844|ref|XP_003989937.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Felis catus]
Length = 631
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 81/167 (48%), Gaps = 14/167 (8%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIALS 270
+V+ D RS G+GFV F S + A A++ G+++ L +AL+
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 73/156 (46%), Gaps = 9/156 (5%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G +L ++ + +N ++G AFV + + A A+ + R +
Sbjct: 111 DNKALYDTFSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVF 169
Query: 173 VNYAKIKKKNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD 231
V K +K+ + K F N++I N E + L+E F S+ +S +V+ D
Sbjct: 170 VGRFKSRKEREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVM-RD 225
Query: 232 NPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVI 267
+S G+GFVS++ + A A+ GK I VI
Sbjct: 226 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVI 261
>gi|344287655|ref|XP_003415568.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Loxodonta
africana]
Length = 631
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 81/167 (48%), Gaps = 14/167 (8%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIALS 270
+V+ D RS G+GFV F S + A A++ G+++ L +AL+
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 73/156 (46%), Gaps = 9/156 (5%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G +L ++ + +N ++G AFV + + A A+ + R +
Sbjct: 111 DNKALYDTFSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVF 169
Query: 173 VNYAKIKKKNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD 231
V K +K+ + K F N++I N E + L+E F S+ +S +V+ D
Sbjct: 170 VGRFKSRKEREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVM-RD 225
Query: 232 NPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVI 267
+S G+GFVS++ + A A+ GK I VI
Sbjct: 226 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVI 261
>gi|426229023|ref|XP_004008593.1| PREDICTED: ELAV-like protein 3 isoform 1 [Ovis aries]
Length = 359
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 78/166 (46%), Gaps = 17/166 (10%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR----NRGLAFVTMGSPDEA 154
SKT L+ +P T ++ ++LF G++ DIE +++ + G FV P++A
Sbjct: 36 SKTNLIVNYLPQNMTQDEFKSLF---GSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDA 92
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
A+N L + + +T+KV+YA+ + NL+++ L K++ +
Sbjct: 93 DKAINTLNGLKLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMSQKEMEQL 143
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
F G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 144 FSQYG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 188
>gi|410950486|ref|XP_003981936.1| PREDICTED: ELAV-like protein 3 isoform 1 [Felis catus]
gi|431918945|gb|ELK17812.1| ELAV-like protein 3 [Pteropus alecto]
Length = 352
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 78/166 (46%), Gaps = 17/166 (10%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR----NRGLAFVTMGSPDEA 154
SKT L+ +P T ++ ++LF G++ DIE +++ + G FV P++A
Sbjct: 29 SKTNLIVNYLPQNMTQDEFKSLF---GSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDA 85
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
A+N L + + +T+KV+YA+ + NL+++ L K++ +
Sbjct: 86 DKAINTLNGLKLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMSQKEMEQL 136
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
F G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 137 FSQYG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 181
>gi|358372661|dbj|GAA89263.1| C6 transcription factor [Aspergillus kawachii IFO 4308]
Length = 1068
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 77/165 (46%), Gaps = 5/165 (3%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEF 166
N+ + T ED++ E++G V + L + ++ ++G +V S D A A++ L F
Sbjct: 889 NIFYDVTREDLKKAMEKYGVVEKVVLVLDNRGISKGYGYVQFDSIDAAQRAVDALNLRLF 948
Query: 167 EGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAE 226
EGR + V +A+ N + Q T L+I NL FE +DL E F + +VV
Sbjct: 949 EGRRVTVQFAQ---NNVYHRRQLN-APTRTLYIGNLPFEMTDRDLNELF-KDVQNVVDIR 1003
Query: 227 VIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271
V ++ G+ F S A+ A++ + K+ + L Y
Sbjct: 1004 VAVDRRTGQARGFAHAEFVSTSSAKAAMAVLENKLPYGRRLRLDY 1048
Score = 41.2 bits (95), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 7/81 (8%)
Query: 187 VQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKS 246
+Q P +FI N+ ++ +DL++ E + VV V+ DN S GYG+V F S
Sbjct: 875 LQEPPTPKETVFIGNIFYDVTREDLKKAM--EKYGVVEKVVLVLDNRGISKGYGYVQFDS 932
Query: 247 KKVAETAISA-----FQGKVI 262
A+ A+ A F+G+ +
Sbjct: 933 IDAAQRAVDALNLRLFEGRRV 953
Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Query: 87 AAVNTEQREEEYSKTR-LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLA 144
A N R + + TR L N+P+ T D+ LF+ V+DI +++ + + RG A
Sbjct: 958 AQNNVYHRRQLNAPTRTLYIGNLPFEMTDRDLNELFKDVQNVVDIRVAVDRRTGQARGFA 1017
Query: 145 FVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKK 181
S A AA+ LE+ GR L+++Y+K +
Sbjct: 1018 HAEFVSTSSAKAAMAVLENKLPYGRRLRLDYSKATSR 1054
>gi|317484641|ref|ZP_07943544.1| RNA recognition domain-containing protein [Bilophila wadsworthia
3_1_6]
gi|345888525|ref|ZP_08839605.1| hypothetical protein HMPREF0178_02379 [Bilophila sp. 4_1_30]
gi|316924115|gb|EFV45298.1| RNA recognition domain-containing protein [Bilophila wadsworthia
3_1_6]
gi|345040599|gb|EGW44839.1| hypothetical protein HMPREF0178_02379 [Bilophila sp. 4_1_30]
Length = 88
Score = 60.8 bits (146), Expect = 6e-07, Method: Composition-based stats.
Identities = 34/81 (41%), Positives = 50/81 (61%), Gaps = 4/81 (4%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIEL-SMHSKNRNRGLAFVTMGSPDEATAALNNLESYE 165
N+PW++T E +++LF +G V+ ++L S R RG FV M P A+AA+ L++
Sbjct: 9 NLPWSATEEQVQSLFADYGPVVSVKLVSDRETGRARGFGFVEMEEPG-ASAAIEALDNAN 67
Query: 166 FEGRTLKVNYAKIKKKNPFPP 186
F GRTL+VN A K + P PP
Sbjct: 68 FGGRTLRVNEA--KPRAPRPP 86
>gi|308467448|ref|XP_003095972.1| CRE-ASD-1 protein [Caenorhabditis remanei]
gi|308244241|gb|EFO88193.1| CRE-ASD-1 protein [Caenorhabditis remanei]
Length = 449
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 55/109 (50%), Gaps = 6/109 (5%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEAT 155
E RL N+P+ D++ +FE+ G V+D+E+ + + ++G FVTM SP++A
Sbjct: 108 ESEGPRRLHVSNIPFKYREPDLKGMFERFGPVVDVEIIFNERG-SKGFGFVTMQSPEDAD 166
Query: 156 AALNNLESYEFEGRTLKVNYAK----IKKKNPFPPVQ-PKPFATFNLFI 199
A N + EGR ++VN A KK P V P A NL +
Sbjct: 167 RARNEINGSTIEGRRVEVNMATQRVHTKKAKPLMSVGVVDPIAAQNLLV 215
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
L ++N+ F+ R DL+ F G VV E+IF N R S G+GFV+ +S + A+ A +
Sbjct: 115 LHVSNIPFKYREPDLKGMFERFG-PVVDVEIIF--NERGSKGFGFVTMQSPEDADRARNE 171
Query: 257 FQGKVI 262
G I
Sbjct: 172 INGSTI 177
>gi|223938363|ref|ZP_03630257.1| RNP-1 like RNA-binding protein [bacterium Ellin514]
gi|223892932|gb|EEF59399.1| RNP-1 like RNA-binding protein [bacterium Ellin514]
Length = 127
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALN 159
T+L N+P+T+T +++ +F QHG V ++L M R RG FVTM + + A AA+
Sbjct: 3 TKLYVGNLPFTATENELQDMFAQHGPVTSVDLIMDKFSGRPRGFGFVTMETQEGAQAAVQ 62
Query: 160 NLESYEFEGRTLKVNYAKIKKK 181
L +F GR L VN A+ +++
Sbjct: 63 ALNGTDFGGRPLTVNEARPREE 84
Score = 40.0 bits (92), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
L++ NL F A +L++ F G V S ++I R G+GFV+ ++++ A+ A+ A
Sbjct: 5 LYVGNLPFTATENELQDMFAQHG-PVTSVDLIMDKFSGRPRGFGFVTMETQEGAQAAVQA 63
Query: 257 FQG 259
G
Sbjct: 64 LNG 66
>gi|119627670|gb|EAX07265.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_e [Homo sapiens]
Length = 615
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 81/167 (48%), Gaps = 14/167 (8%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIALS 270
+V+ D RS G+GFV F S + A A++ G+++ L +AL+
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 73/156 (46%), Gaps = 9/156 (5%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G +L ++ + +N ++G AFV + + A A+ + R +
Sbjct: 111 DNKALYDTFSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVF 169
Query: 173 VNYAKIKKKNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD 231
V K +K+ + K F N++I N E + L+E F S+ +S +V+ D
Sbjct: 170 VGRFKSRKEREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVM-RD 225
Query: 232 NPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVI 267
+S G+GFVS++ + A A+ GK I +I
Sbjct: 226 PNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKII 261
>gi|417403591|gb|JAA48595.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 644
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 85/181 (46%), Gaps = 14/181 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N E ++ LF Q G L +++ +++G FV+ ++A A+
Sbjct: 191 TNVYIKNFGEEMDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEE 250
Query: 161 LESYEFEGRTLKVNYAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDL 211
+ E G+ + V A+ K K F ++ + + + NL+I NL + L
Sbjct: 251 MNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 310
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIAL 269
R+ F G + SA+V+ D RS G+GFV F S + A A++ G+++ L +AL
Sbjct: 311 RKEFSPFG-SITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVAL 367
Query: 270 S 270
+
Sbjct: 368 A 368
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 73/156 (46%), Gaps = 9/156 (5%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G +L ++ + +N ++G AFV + + A A+ + R +
Sbjct: 111 DNKALYDTFSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVF 169
Query: 173 VNYAKIKKKNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD 231
V K +K+ + K F N++I N E + L+E F S+ +S +V+ D
Sbjct: 170 VGRFKSRKEREAELGAKAKEFT--NVYIKNFGEEMDDESLKELF-SQFGKTLSVKVM-RD 225
Query: 232 NPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVI 267
+S G+GFVS++ + A A+ GK I VI
Sbjct: 226 PNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVI 261
>gi|281344898|gb|EFB20482.1| hypothetical protein PANDA_020836 [Ailuropoda melanoleuca]
Length = 674
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 81/167 (48%), Gaps = 14/167 (8%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 218 ESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVG 277
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 278 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 336
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIALS 270
+V+ D RS G+GFV F S + A A++ G+++ L +AL+
Sbjct: 337 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 381
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 73/156 (46%), Gaps = 9/156 (5%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G +L ++ + +N ++G AFV + + A A+ + R +
Sbjct: 124 DNKALYDTFSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVF 182
Query: 173 VNYAKIKKKNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD 231
V K +K+ + K F N++I N E + L+E F S+ +S +V+ D
Sbjct: 183 VGRFKSRKEREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVM-RD 238
Query: 232 NPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVI 267
+S G+GFVS++ + A A+ GK I VI
Sbjct: 239 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVI 274
Score = 37.0 bits (84), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ ++ M R++G FV SP
Sbjct: 298 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-MLEDGRSKGFGFVCFSSP 356
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 357 EEATKAVTEMNGRIVGSKPLYVALAQRKEE 386
>gi|126342190|ref|XP_001379497.1| PREDICTED: polyadenylate-binding protein 1 [Monodelphis domestica]
Length = 669
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 81/171 (47%), Gaps = 12/171 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N + + +F ++G L +++ R++G FV+ S ++A AA+++
Sbjct: 225 TNIYIKNFGENMDDQRLTEIFAKYGPTLSVKVMTDDCGRSKGFGFVSFQSHEDAQAAVDD 284
Query: 161 LESYEFEGRTLKVNYAKIKK------KNPFPPV---QPKPFATFNLFIANLSFEARAKDL 211
+ + G+ + V A+ K+ K F + Q + NL+I NL + L
Sbjct: 285 MNGKQLNGKQIYVGRAQKKRERQTELKRHFEQIKQNQHIRYQGVNLYIKNLDDTINDEHL 344
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
R+ F G + SA+V+ + RS G+GFV F S K A A GK++
Sbjct: 345 RKEFSPFG-TITSAKVMMENG--RSKGFGFVCFSSSKDAAKASREMNGKLV 392
Score = 41.2 bits (95), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 72/158 (45%), Gaps = 27/158 (17%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAA--------LNNLESY 164
D +AL F G +L ++ + +N ++G FV + + A A LNNL+ +
Sbjct: 145 DNKALYDTFSTFGRILSCKV-ISDENGSKGYGFVHFETQESAGKAIEKMNGMLLNNLKVF 203
Query: 165 --EFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDV 222
F+ R + + +K K+ N++I N + L E F G
Sbjct: 204 VGRFKSRRERESELGVKAKD-----------YTNIYIKNFGENMDDQRLTEIFAKYG-PT 251
Query: 223 VSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
+S +V+ D+ RS G+GFVSF+S + A+ A+ GK
Sbjct: 252 LSVKVMT-DDCGRSKGFGFVSFQSHEDAQAAVDDMNGK 288
>gi|395730526|ref|XP_003775742.1| PREDICTED: ELAV-like protein 4 [Pongo abelii]
Length = 402
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 73/163 (44%), Gaps = 11/163 (6%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T E+ R+LF G + +L ++ G FV P +A A
Sbjct: 80 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 139
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + +T+KV+YA+ + NL+++ L K+L + F S
Sbjct: 140 INTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQKELEQLF-S 189
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
+ ++++ ++ S G GF+ F + AE AI G+
Sbjct: 190 QYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 232
>gi|294054726|ref|YP_003548384.1| RNP-1 like RNA-binding protein [Coraliomargarita akajimensis DSM
45221]
gi|293614059|gb|ADE54214.1| RNP-1 like RNA-binding protein [Coraliomargarita akajimensis DSM
45221]
Length = 147
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDI-ELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYE 165
N+ + +T ED+ LF HGTV D+ L R RG AFV+M +P+E AA+ L E
Sbjct: 5 NLSFDATQEDLEGLFSAHGTVTDVFILKDRESGRPRGFAFVSMETPEEMNAAIEALNGEE 64
Query: 166 FEGRTLKVNYAK 177
F GR L +N A+
Sbjct: 65 FMGRNLTINEAR 76
>gi|149693653|ref|XP_001492549.1| PREDICTED: ELAV-like protein 4 isoform 3 [Equus caballus]
Length = 366
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 82/189 (43%), Gaps = 11/189 (5%)
Query: 73 SATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIEL 132
S+T+ P ++ + + + SKT L+ +P T E+ R+LF G + +L
Sbjct: 18 SSTSNGPSSNNRNCPSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKL 77
Query: 133 SMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKP 191
++ G FV P +A A+N L + +T+KV+YA+ +
Sbjct: 78 VRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS--------- 128
Query: 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAE 251
NL+++ L K+L + F G ++++ ++ S G GF+ F + AE
Sbjct: 129 IRDANLYVSGLPKTMTQKELEQLFSQYGR-IITSRILVDQVTGVSRGVGFIRFDKRIEAE 187
Query: 252 TAISAFQGK 260
AI G+
Sbjct: 188 EAIKGLNGQ 196
>gi|410966842|ref|XP_003989936.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Felis catus]
Length = 644
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 81/167 (48%), Gaps = 14/167 (8%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIALS 270
+V+ D RS G+GFV F S + A A++ G+++ L +AL+
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 73/156 (46%), Gaps = 9/156 (5%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G +L ++ + +N ++G AFV + + A A+ + R +
Sbjct: 111 DNKALYDTFSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVF 169
Query: 173 VNYAKIKKKNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD 231
V K +K+ + K F N++I N E + L+E F S+ +S +V+ D
Sbjct: 170 VGRFKSRKEREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVM-RD 225
Query: 232 NPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVI 267
+S G+GFVS++ + A A+ GK I VI
Sbjct: 226 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVI 261
Score = 37.0 bits (84), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ ++ M R++G FV SP
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-MLEDGRSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|395829049|ref|XP_003787673.1| PREDICTED: polyadenylate-binding protein 1-like [Otolemur
garnettii]
Length = 611
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 85/181 (46%), Gaps = 14/181 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N+ + ++ LF Q G +L +++ S +RG FV + +EA A+ +
Sbjct: 191 TNIYVKNLQADVDEQGLQELFSQFGKMLSVKVMRDSSGHSRGFGFVNFETHEEAQKAVVH 250
Query: 161 LESYEFEGRTLKVNYA--KIKKKNPFPPV-------QPKPFATFNLFIANLSFEARAKDL 211
+ E GR L V A +++++N + + NL++ NL + L
Sbjct: 251 MNGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRMNRYQGVNLYVKNLDDSIDDEKL 310
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIAL 269
R+ F G + SA+V+ S G+GFV F S + A A++ G+++ L +AL
Sbjct: 311 RKEFSPYGM-ITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 367
Query: 270 S 270
+
Sbjct: 368 A 368
>gi|336266018|ref|XP_003347779.1| hypothetical protein SMAC_03877 [Sordaria macrospora k-hell]
gi|380091314|emb|CCC11171.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 315
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 78/183 (42%), Gaps = 23/183 (12%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATA 156
E S TRL N+P +T D+ A F HGT E+ + + G F+ +A
Sbjct: 3 EVSSTRLYLGNLPRHATKADVEAHFATHGTGEITEIKLMN-----GFGFIEYKDAMDARD 57
Query: 157 ALNNLESYEFEGRTLKVNYAKIKKKNPFPP-------VQPKPFAT-FNLFIANLSFEARA 208
+ +F G L V +A+ + P QP+P T + I+ L E
Sbjct: 58 VVPAFHGSDFMGERLTVQFARGARHREGGPGFTHERNSQPRPRRTPHRMQISGLPNETSW 117
Query: 209 KDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA-----FQGKVIM 263
+DL++F G DVV +E + N G GFV F++ TA+ F+G+ +
Sbjct: 118 QDLKDFARQSGLDVVYSETTRNQN-----GEGFVEFENAADLRTAVEKLDNREFKGQRVT 172
Query: 264 CLV 266
C+
Sbjct: 173 CVA 175
>gi|344287651|ref|XP_003415566.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Loxodonta
africana]
Length = 644
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 81/167 (48%), Gaps = 14/167 (8%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIALS 270
+V+ D RS G+GFV F S + A A++ G+++ L +AL+
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 73/156 (46%), Gaps = 9/156 (5%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G +L ++ + +N ++G AFV + + A A+ + R +
Sbjct: 111 DNKALYDTFSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVF 169
Query: 173 VNYAKIKKKNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD 231
V K +K+ + K F N++I N E + L+E F S+ +S +V+ D
Sbjct: 170 VGRFKSRKEREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVM-RD 225
Query: 232 NPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVI 267
+S G+GFVS++ + A A+ GK I VI
Sbjct: 226 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVI 261
>gi|301790633|ref|XP_002930398.1| PREDICTED: polyadenylate-binding protein 4-like [Ailuropoda
melanoleuca]
Length = 644
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 81/167 (48%), Gaps = 14/167 (8%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIALS 270
+V+ D RS G+GFV F S + A A++ G+++ L +AL+
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 73/156 (46%), Gaps = 9/156 (5%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G +L ++ + +N ++G AFV + + A A+ + R +
Sbjct: 111 DNKALYDTFSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVF 169
Query: 173 VNYAKIKKKNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD 231
V K +K+ + K F N++I N E + L+E F S+ +S +V+ D
Sbjct: 170 VGRFKSRKEREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVM-RD 225
Query: 232 NPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVI 267
+S G+GFVS++ + A A+ GK I VI
Sbjct: 226 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVI 261
>gi|302819965|ref|XP_002991651.1| hypothetical protein SELMODRAFT_451447 [Selaginella moellendorffii]
gi|300140500|gb|EFJ07222.1| hypothetical protein SELMODRAFT_451447 [Selaginella moellendorffii]
Length = 480
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 92/200 (46%), Gaps = 30/200 (15%)
Query: 83 SSSAAAVNTEQREEEYSKT---------RLVAQNVPWTSTHEDIRALFEQHGTVLDIELS 133
SSS+ V +RE + S + +L +VP T T + +R++FE++G VL++ +
Sbjct: 15 SSSSWRVAGHKRERDNSDSSEGGQHTYVKLFVGSVPRTITEQQVRSMFEEYGEVLEVAI- 73
Query: 134 MHSKNRNRG-------LAFVTMGSPDEATAA---LNNLESYEFEGRTLKVNYAKIKKKNP 183
K+R G FV S DEA A LNN + ++V YA +++
Sbjct: 74 --IKDRRTGHQQGMFCCCFVKYSSRDEADRAIRCLNNQRTLPGGASPVQVRYADGERERL 131
Query: 184 FPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVS 243
++ K LF+ L+ A +++ E F G V + D ++S G F+
Sbjct: 132 AGAIEHK------LFVGCLNKHASEREIEEVFSPYG--RVDDIYVMRDEHKQSRGCAFIK 183
Query: 244 FKSKKVAETAISAFQGKVIM 263
+ S+ +A+ AI+A IM
Sbjct: 184 YPSRDMAQAAIAALNDVYIM 203
>gi|149693651|ref|XP_001492503.1| PREDICTED: ELAV-like protein 4 isoform 1 [Equus caballus]
Length = 366
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 83/189 (43%), Gaps = 11/189 (5%)
Query: 73 SATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIEL 132
S+T+ P ++ + + + SKT L+ +P T E+ R+LF G + +L
Sbjct: 18 SSTSNGPSSNNRNCPSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKL 77
Query: 133 SMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKP 191
++ G FV P +A A+N L + +T+KV+YA+ +
Sbjct: 78 VRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS--------- 128
Query: 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAE 251
NL+++ L K+L + F S+ ++++ ++ S G GF+ F + AE
Sbjct: 129 IRDANLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAE 187
Query: 252 TAISAFQGK 260
AI G+
Sbjct: 188 EAIKGLNGQ 196
>gi|41388837|gb|AAH65540.1| PABPC4 protein [Homo sapiens]
Length = 631
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 81/167 (48%), Gaps = 14/167 (8%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIALS 270
+V+ D RS G+GFV F S + A A++ G+++ L +AL+
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 69/148 (46%), Gaps = 6/148 (4%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N ++G AFV + + A A+ + R + V K +K
Sbjct: 119 FSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 181 KNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ + K F N++I N E + L+E F S+ +S +V+ N + S G+
Sbjct: 178 EREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVMRDPNGK-SKGF 233
Query: 240 GFVSFKSKKVAETAISAFQGKVIMCLVI 267
GFVS++ + A A+ GK I +I
Sbjct: 234 GFVSYEKHEDANKAVEEMNGKEISGKII 261
>gi|338727192|ref|XP_001916382.2| PREDICTED: LOW QUALITY PROTEIN: ELAV-like protein 3-like [Equus
caballus]
Length = 345
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 78/166 (46%), Gaps = 17/166 (10%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR----NRGLAFVTMGSPDEA 154
SKT L+ +P T ++ ++LF G++ DIE +++ + G FV P++A
Sbjct: 40 SKTNLIVNYLPQNMTQDEFKSLF---GSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDA 96
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
A+N L + + +T+KV+YA+ + NL+++ L K++ +
Sbjct: 97 DKAINTLNGLKLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMSQKEMEQL 147
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
F G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 148 FSQYG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 192
>gi|336465804|gb|EGO53969.1| hypothetical protein NEUTE1DRAFT_118022 [Neurospora tetrasperma
FGSC 2508]
gi|350287365|gb|EGZ68612.1| hypothetical protein NEUTE2DRAFT_146011 [Neurospora tetrasperma
FGSC 2509]
Length = 315
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 78/183 (42%), Gaps = 23/183 (12%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATA 156
E S TRL N+P +T D+ A F HGT E+ + + G F+ +A
Sbjct: 3 EVSSTRLYLGNLPRHATKADVEAHFATHGTGEITEIKLMN-----GFGFIEYKDAMDARD 57
Query: 157 ALNNLESYEFEGRTLKVNYAKIKKKNPFPP-------VQPKPFAT-FNLFIANLSFEARA 208
+ +F G L V +A+ + P QP+P T + I+ L E
Sbjct: 58 VVPAFHGSDFMGERLTVQFARGARHREGGPGFTHERNSQPRPRRTPHRMQISGLPNETSW 117
Query: 209 KDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA-----FQGKVIM 263
+DL++F G DVV +E + N G GFV F++ TA+ F+G+ +
Sbjct: 118 QDLKDFARQSGLDVVYSETTRNQN-----GEGFVEFENAADLRTAVEKLDNREFKGQRVT 172
Query: 264 CLV 266
C+
Sbjct: 173 CVA 175
>gi|302338833|ref|YP_003804039.1| RNP-1 like RNA-binding protein [Spirochaeta smaragdinae DSM 11293]
gi|301636018|gb|ADK81445.1| RNP-1 like RNA-binding protein [Spirochaeta smaragdinae DSM 11293]
Length = 93
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
+L N+ ++ST + LF Q+G V+ ++ + + R+RG FV M D A AA++
Sbjct: 4 KLYVGNLSYSSTEPGLEDLFGQYGQVVSAKIVLDRETKRSRGFGFVEMEQDDAAEAAISA 63
Query: 161 LESYEFEGRTLKVNYAKIKKKNP 183
L+ YEF+GR L+VN A +++ P
Sbjct: 64 LDGYEFDGRRLRVNEAMERERRP 86
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
L++ NLS+ + L + F G VVSA+++ +RS G+GFV + AE AISA
Sbjct: 5 LYVGNLSYSSTEPGLEDLFGQYGQ-VVSAKIVLDRETKRSRGFGFVEMEQDDAAEAAISA 63
Query: 257 FQG 259
G
Sbjct: 64 LDG 66
>gi|417403696|gb|JAA48646.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 660
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 85/181 (46%), Gaps = 14/181 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N E ++ LF Q G L +++ +++G FV+ ++A A+
Sbjct: 191 TNVYIKNFGEEMDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEE 250
Query: 161 LESYEFEGRTLKVNYAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDL 211
+ E G+ + V A+ K K F ++ + + + NL+I NL + L
Sbjct: 251 MNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 310
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIAL 269
R+ F G + SA+V+ D RS G+GFV F S + A A++ G+++ L +AL
Sbjct: 311 RKEFSPFG-SITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVAL 367
Query: 270 S 270
+
Sbjct: 368 A 368
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 73/156 (46%), Gaps = 9/156 (5%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G +L ++ + +N ++G AFV + + A A+ + R +
Sbjct: 111 DNKALYDTFSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVF 169
Query: 173 VNYAKIKKKNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD 231
V K +K+ + K F N++I N E + L+E F S+ +S +V+
Sbjct: 170 VGRFKSRKEREAELGAKAKEFT--NVYIKNFGEEMDDESLKELF-SQFGKTLSVKVMRDP 226
Query: 232 NPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVI 267
N + S G+GFVS++ + A A+ GK I VI
Sbjct: 227 NGK-SKGFGFVSYEKHEDANKAVEEMNGKEISGKVI 261
>gi|395853070|ref|XP_003799043.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Otolemur
garnettii]
Length = 646
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 81/167 (48%), Gaps = 14/167 (8%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIALS 270
+V+ D RS G+GFV F S + A A++ G+++ L +AL+
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 73/156 (46%), Gaps = 9/156 (5%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G +L ++ + +N ++G AFV + + A A+ + R +
Sbjct: 111 DNKALYDTFSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVF 169
Query: 173 VNYAKIKKKNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD 231
V K +K+ + K F N++I N E + L+E F S+ +S +V+ D
Sbjct: 170 VGRFKSRKEREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVM-RD 225
Query: 232 NPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVI 267
+S G+GFVS++ + A A+ GK I VI
Sbjct: 226 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVI 261
Score = 37.0 bits (84), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ ++ M R++G FV SP
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-MLEDGRSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|395853068|ref|XP_003799042.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Otolemur
garnettii]
Length = 662
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 81/167 (48%), Gaps = 14/167 (8%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIALS 270
+V+ D RS G+GFV F S + A A++ G+++ L +AL+
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 73/156 (46%), Gaps = 9/156 (5%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G +L ++ + +N ++G AFV + + A A+ + R +
Sbjct: 111 DNKALYDTFSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVF 169
Query: 173 VNYAKIKKKNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD 231
V K +K+ + K F N++I N E + L+E F S+ +S +V+ D
Sbjct: 170 VGRFKSRKEREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVM-RD 225
Query: 232 NPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVI 267
+S G+GFVS++ + A A+ GK I VI
Sbjct: 226 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVI 261
>gi|338721949|ref|XP_003364451.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Equus
caballus]
Length = 660
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 81/167 (48%), Gaps = 14/167 (8%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIALS 270
+V+ D RS G+GFV F S + A A++ G+++ L +AL+
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 73/156 (46%), Gaps = 9/156 (5%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G +L ++ + +N ++G AFV + + A A+ + R +
Sbjct: 111 DNKALYDTFSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVF 169
Query: 173 VNYAKIKKKNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD 231
V K +K+ + K F N++I N E + L+E F S+ +S +V+ D
Sbjct: 170 VGRFKSRKEREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVM-RD 225
Query: 232 NPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVI 267
+S G+GFVS++ + A A+ GK I VI
Sbjct: 226 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVI 261
>gi|149693775|ref|XP_001503500.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Equus
caballus]
Length = 644
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 81/167 (48%), Gaps = 14/167 (8%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIALS 270
+V+ D RS G+GFV F S + A A++ G+++ L +AL+
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 73/156 (46%), Gaps = 9/156 (5%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G +L ++ + +N ++G AFV + + A A+ + R +
Sbjct: 111 DNKALYDTFSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVF 169
Query: 173 VNYAKIKKKNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD 231
V K +K+ + K F N++I N E + L+E F S+ +S +V+ D
Sbjct: 170 VGRFKSRKEREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVM-RD 225
Query: 232 NPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVI 267
+S G+GFVS++ + A A+ GK I VI
Sbjct: 226 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVI 261
>gi|332219807|ref|XP_003259049.1| PREDICTED: ELAV-like protein 4 isoform 4 [Nomascus leucogenys]
gi|332808951|ref|XP_001135610.2| PREDICTED: ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 isoform 10 [Pan troglodytes]
gi|397518906|ref|XP_003829616.1| PREDICTED: ELAV-like protein 4 isoform 3 [Pan paniscus]
gi|402854509|ref|XP_003891910.1| PREDICTED: ELAV-like protein 4 isoform 4 [Papio anubis]
gi|426329579|ref|XP_004025816.1| PREDICTED: ELAV-like protein 4 isoform 4 [Gorilla gorilla gorilla]
gi|119627246|gb|EAX06841.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu
antigen D), isoform CRA_a [Homo sapiens]
Length = 402
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 73/163 (44%), Gaps = 11/163 (6%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T E+ R+LF G + +L ++ G FV P +A A
Sbjct: 80 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 139
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + +T+KV+YA+ + NL+++ L K+L + F S
Sbjct: 140 INTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQKELEQLF-S 189
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
+ ++++ ++ S G GF+ F + AE AI G+
Sbjct: 190 QYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 232
>gi|410263252|gb|JAA19592.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 631
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 81/167 (48%), Gaps = 14/167 (8%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIALS 270
+V+ D RS G+GFV F S + A A++ G+++ L +AL+
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 73/156 (46%), Gaps = 9/156 (5%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G +L ++ + +N ++G AFV + + A A+ + R +
Sbjct: 111 DNKALYDTFSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVF 169
Query: 173 VNYAKIKKKNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD 231
V K +K+ + K F N++I N E + L+E F S+ +S +V+
Sbjct: 170 VGRFKSRKEREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVMRDP 226
Query: 232 NPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVI 267
N + S G+GFVS++ + A A+ GK I +I
Sbjct: 227 NGK-SKGFGFVSYEKHEDANKAVEEMNGKEISGKII 261
>gi|49355765|ref|NP_115657.2| ELAV-like protein 3 isoform 2 [Homo sapiens]
gi|119604627|gb|EAW84221.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu
antigen C), isoform CRA_b [Homo sapiens]
gi|261861050|dbj|BAI47047.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3
[synthetic construct]
gi|380783931|gb|AFE63841.1| ELAV-like protein 3 isoform 2 [Macaca mulatta]
Length = 360
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 78/166 (46%), Gaps = 17/166 (10%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR----NRGLAFVTMGSPDEA 154
SKT L+ +P T ++ ++LF G++ DIE +++ + G FV P++A
Sbjct: 37 SKTNLIVNYLPQNMTQDEFKSLF---GSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDA 93
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
A+N L + + +T+KV+YA+ + NL+++ L K++ +
Sbjct: 94 DKAINTLNGLKLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMSQKEMEQL 144
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
F G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 145 FSQYG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 189
>gi|431922543|gb|ELK19486.1| Polyadenylate-binding protein 4 [Pteropus alecto]
Length = 720
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 76/157 (48%), Gaps = 12/157 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKVIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
+V+ D RS G+GFV F S + A A++ G+++
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 73/156 (46%), Gaps = 9/156 (5%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G +L ++ + +N ++G AFV + + A A+ + R +
Sbjct: 111 DNKALYDTFSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVF 169
Query: 173 VNYAKIKKKNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD 231
V K +K+ + K F N++I N E + L+E F S+ +S +V+ D
Sbjct: 170 VGRFKSRKEREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVM-RD 225
Query: 232 NPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVI 267
+S G+GFVS++ + A A+ GK I VI
Sbjct: 226 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKVI 261
Score = 37.0 bits (84), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ ++ M R++G FV SP
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-MLEDGRSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|73976763|ref|XP_857000.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Canis lupus
familiaris]
Length = 644
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 81/167 (48%), Gaps = 14/167 (8%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIALS 270
+V+ D RS G+GFV F S + A A++ G+++ L +AL+
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 73/156 (46%), Gaps = 9/156 (5%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G +L ++ + +N ++G AFV + + A A+ + R +
Sbjct: 111 DNKALYDTFSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVF 169
Query: 173 VNYAKIKKKNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD 231
V K +K+ + K F N++I N E + L+E F S+ +S +V+ D
Sbjct: 170 VGRFKSRKEREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVM-RD 225
Query: 232 NPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVI 267
+S G+GFVS++ + A A+ GK I VI
Sbjct: 226 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVI 261
>gi|47223169|emb|CAG11304.1| unnamed protein product [Tetraodon nigroviridis]
Length = 642
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 90/195 (46%), Gaps = 19/195 (9%)
Query: 92 EQREEEYSK-----TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFV 146
++REEE T + +N T E ++ +F G L + + + R+RG FV
Sbjct: 175 KEREEELGSKALKFTNVYIKNFGEDYTDEKLKEVFSAFGRTLSVRVMKDERGRSRGFGFV 234
Query: 147 TMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK------KNPFPPVQP---KPFATFNL 197
+A A++ + E G+ + V A+ + K F ++ + + NL
Sbjct: 235 NFAHHGDAQKAVDEMNGTELNGKVIYVGRAQKRLERQGELKRKFELIKQDRIQRYQGVNL 294
Query: 198 FIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAF 257
++ NL + LR+ F G + SA+V+ D P+ S G+GFV F S + A A++
Sbjct: 295 YVKNLDDGIDDERLRKEFAPYGT-ITSAKVMT-DGPQ-SRGFGFVCFSSPEEATKAVTEM 351
Query: 258 QGKVIMC--LVIALS 270
G+++ L +AL+
Sbjct: 352 NGRIVATKPLYVALA 366
>gi|268564135|ref|XP_002647098.1| C. briggsae CBR-MSI-1 protein [Caenorhabditis briggsae]
Length = 318
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 86/194 (44%), Gaps = 19/194 (9%)
Query: 81 VDSSSAAAVNTEQREEEYSK---TRLVAQNVPWTSTHEDIRALFEQHGTVLD-IELSMHS 136
VD A +N + + + ++ + W +T E++R F + G V + + + +
Sbjct: 19 VDGHEEARLNADSDDGSHGSQDPGKMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPA 78
Query: 137 KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPP-VQPKPFA-T 194
R RG F+T P LN +E +G+ KI K FP Q K T
Sbjct: 79 TKRARGFGFITFVEPSSVDKVLN-ARDHELDGK-------KIDPKVAFPKRTQAKLVTKT 130
Query: 195 FNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKS----KKVA 250
+FI LS + +D++++F S G V A +++ +R G+GFV+F S KV
Sbjct: 131 KKVFIGGLSATSTLEDMKQYFESYG-KVEDAMLMYDKATQRHRGFGFVTFDSDEVADKVC 189
Query: 251 ETAISAFQGKVIMC 264
E GK++ C
Sbjct: 190 EIHFHEINGKMVEC 203
>gi|403302354|ref|XP_003941825.1| PREDICTED: ELAV-like protein 3 isoform 1 [Saimiri boliviensis
boliviensis]
Length = 352
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 78/166 (46%), Gaps = 17/166 (10%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR----NRGLAFVTMGSPDEA 154
SKT L+ +P T ++ ++LF G++ DIE +++ + G FV P++A
Sbjct: 29 SKTNLIVNYLPQNMTQDEFKSLF---GSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDA 85
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
A+N L + + +T+KV+YA+ + NL+++ L K++ +
Sbjct: 86 DKAINTLNGLKLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMSQKEMEQL 136
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
F G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 137 FSQYG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 181
>gi|348554577|ref|XP_003463102.1| PREDICTED: ELAV-like protein 4 isoform 1 [Cavia porcellus]
gi|354468154|ref|XP_003496532.1| PREDICTED: ELAV-like protein 4 isoform 2 [Cricetulus griseus]
Length = 383
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 73/163 (44%), Gaps = 11/163 (6%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T E+ R+LF G + +L ++ G FV P +A A
Sbjct: 61 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 120
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + +T+KV+YA+ + NL+++ L K+L + F S
Sbjct: 121 INTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQKELEQLF-S 170
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
+ ++++ ++ S G GF+ F + AE AI G+
Sbjct: 171 QYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 213
>gi|301771944|ref|XP_002921434.1| PREDICTED: ELAV-like protein 3-like [Ailuropoda melanoleuca]
Length = 350
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 78/166 (46%), Gaps = 17/166 (10%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR----NRGLAFVTMGSPDEA 154
SKT L+ +P T ++ ++LF G++ DIE +++ + G FV P++A
Sbjct: 40 SKTNLIVNYLPQNMTQDEFKSLF---GSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDA 96
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
A+N L + + +T+KV+YA+ + NL+++ L K++ +
Sbjct: 97 DKAINTLNGLKLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMSQKEMEQL 147
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
F G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 148 FSQYG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 192
>gi|208431836|ref|NP_001129126.1| polyadenylate-binding protein 4 isoform 3 [Homo sapiens]
gi|332808512|ref|XP_003308043.1| PREDICTED: polyadenylate-binding protein 4 [Pan troglodytes]
gi|395730718|ref|XP_003775778.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Pongo abelii]
gi|426329064|ref|XP_004025564.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Gorilla
gorilla gorilla]
gi|119627671|gb|EAX07266.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_f [Homo sapiens]
gi|410227602|gb|JAA11020.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 631
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 81/167 (48%), Gaps = 14/167 (8%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIALS 270
+V+ D RS G+GFV F S + A A++ G+++ L +AL+
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 73/156 (46%), Gaps = 9/156 (5%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G +L ++ + +N ++G AFV + + A A+ + R +
Sbjct: 111 DNKALYDTFSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVF 169
Query: 173 VNYAKIKKKNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD 231
V K +K+ + K F N++I N E + L+E F S+ +S +V+
Sbjct: 170 VGRFKSRKEREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVMRDP 226
Query: 232 NPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVI 267
N + S G+GFVS++ + A A+ GK I +I
Sbjct: 227 NGK-SKGFGFVSYEKHEDANKAVEEMNGKEISGKII 261
>gi|448114345|ref|XP_004202551.1| Piso0_001392 [Millerozyma farinosa CBS 7064]
gi|359383419|emb|CCE79335.1| Piso0_001392 [Millerozyma farinosa CBS 7064]
Length = 422
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 92/191 (48%), Gaps = 9/191 (4%)
Query: 82 DSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR-N 140
+SS A+AV+ + E S T L + + + + +R LF G V I+ +++ KNR
Sbjct: 56 ESSPASAVDGGR---EISNTILYVGGLHKSVSEDVLRDLFSSCGGVKSIK-TLNDKNRPG 111
Query: 141 RGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIA 200
AFV + D A AL L +K+N+A + Q +PF FN+F+
Sbjct: 112 FSYAFVEFENSDSADLALRTLNGRMVNNSVIKINWA-YQSSAVSTASQHEPF--FNIFVG 168
Query: 201 NLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
+LS E + L + F S+ + A V++ RS GYGFVSF ++ AE A+ G+
Sbjct: 169 DLSPEVDDESLHKAF-SKFESLRQAHVMWDMQTSRSRGYGFVSFGNQVDAELALQTMNGE 227
Query: 261 VIMCLVIALSY 271
I I ++
Sbjct: 228 WIGGRAIRCNW 238
>gi|269860405|ref|XP_002649924.1| RNA-binding protein, predicted [Enterocytozoon bieneusi H348]
gi|220066684|gb|EED44158.1| RNA-binding protein, predicted [Enterocytozoon bieneusi H348]
Length = 336
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 77/165 (46%), Gaps = 20/165 (12%)
Query: 106 QNVPWTSTHEDIRALFEQHGTVLDIELSMHSKN-RNRGLAFVTMGSPDEATAALNNLESY 164
+N+ + D+R F + G ++ ++LSM+ K RN G AF+ L L +
Sbjct: 103 KNLNYDLRDTDLRNEFSKLGKIIRLDLSMNYKGLRNNGYAFIEFADKKAFDLCLQ-LHNT 161
Query: 165 EFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVS 224
E GRT+ + AK PV PK ++ +FI NL F + DL+E F G +
Sbjct: 162 ELFGRTVVIEKAK--------PVSPKLYS---VFIKNLPFSIKKDDLKETFSKFGK--IH 208
Query: 225 AEVIFHD--NPRRSAGYGFVSFKSKKVAETAISA---FQGKVIMC 264
I D N R+ G+GF+ F KK AE A A Q + +C
Sbjct: 209 NISIPEDKENEGRNKGFGFIDFVDKKSAELASKANIFIQKRKCIC 253
>gi|254281259|ref|NP_001156869.1| ELAV-like protein 4 isoform c [Mus musculus]
Length = 356
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 72/163 (44%), Gaps = 11/163 (6%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T E+ R+LF G + +L ++ G FV P +A A
Sbjct: 47 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 106
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + +T+KV+YA+ + NL+++ L K+L + F
Sbjct: 107 INTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQKELEQLFSQ 157
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 158 YG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 199
>gi|344283287|ref|XP_003413403.1| PREDICTED: ELAV-like protein 3 [Loxodonta africana]
Length = 360
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 78/166 (46%), Gaps = 17/166 (10%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR----NRGLAFVTMGSPDEA 154
SKT L+ +P T ++ ++LF G++ DIE +++ + G FV P++A
Sbjct: 37 SKTNLIVNYLPQNMTQDEFKSLF---GSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDA 93
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
A+N L + + +T+KV+YA+ + NL+++ L K++ +
Sbjct: 94 DKAINTLNGLKLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMSQKEMEQL 144
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
F G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 145 FSQYG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 189
>gi|221316769|ref|NP_001138247.1| ELAV-like protein 4 isoform 3 [Homo sapiens]
gi|14280325|gb|AAK57539.1| HUD4 [Homo sapiens]
Length = 383
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 73/163 (44%), Gaps = 11/163 (6%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T E+ R+LF G + +L ++ G FV P +A A
Sbjct: 61 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 120
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + +T+KV+YA+ + NL+++ L K+L + F S
Sbjct: 121 INTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQKELEQLF-S 170
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
+ ++++ ++ S G GF+ F + AE AI G+
Sbjct: 171 QYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 213
>gi|2801552|gb|AAC40080.1| RNA binding protein Elavl4 [Mus musculus]
Length = 346
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 72/163 (44%), Gaps = 11/163 (6%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T E+ R+LF G + +L ++ G FV P +A A
Sbjct: 37 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 96
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + +T+KV+YA+ + NL+++ L K+L + F
Sbjct: 97 INTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQKELEQLFSQ 147
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 148 YG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 189
>gi|403292062|ref|XP_003937076.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Saimiri
boliviensis boliviensis]
Length = 630
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 81/167 (48%), Gaps = 14/167 (8%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIALS 270
+V+ D RS G+GFV F S + A A++ G+++ L +AL+
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 73/156 (46%), Gaps = 9/156 (5%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G +L ++ + +N ++G AFV + + A A+ + R +
Sbjct: 111 DNKALYDTFSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVF 169
Query: 173 VNYAKIKKKNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD 231
V K +K+ + K F N++I N E + L+E F S+ +S +V+
Sbjct: 170 VGRFKSRKEREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVMRDP 226
Query: 232 NPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVI 267
N + S G+GFVS++ + A A+ GK I +I
Sbjct: 227 NGK-SKGFGFVSYEKHEDANKAVEEMNGKEISGKII 261
>gi|395855039|ref|XP_003799979.1| PREDICTED: ELAV-like protein 4 isoform 2 [Otolemur garnettii]
Length = 383
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 73/163 (44%), Gaps = 11/163 (6%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T E+ R+LF G + +L ++ G FV P +A A
Sbjct: 61 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 120
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + +T+KV+YA+ + NL+++ L K+L + F S
Sbjct: 121 INTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQKELEQLF-S 170
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
+ ++++ ++ S G GF+ F + AE AI G+
Sbjct: 171 QYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 213
>gi|390465922|ref|XP_003733491.1| PREDICTED: ELAV-like protein 4 isoform 4 [Callithrix jacchus]
gi|403258121|ref|XP_003921627.1| PREDICTED: ELAV-like protein 4 isoform 3 [Saimiri boliviensis
boliviensis]
Length = 402
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 73/163 (44%), Gaps = 11/163 (6%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T E+ R+LF G + +L ++ G FV P +A A
Sbjct: 80 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 139
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + +T+KV+YA+ + NL+++ L K+L + F S
Sbjct: 140 INTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQKELEQLF-S 189
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
+ ++++ ++ S G GF+ F + AE AI G+
Sbjct: 190 QYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 232
>gi|347446711|ref|NP_001231530.1| ELAV-like protein 4 isoform 2 [Danio rerio]
Length = 398
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 82/192 (42%), Gaps = 14/192 (7%)
Query: 73 SATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIEL 132
SAT P +S S + + SKT L+ +P T E+ R+LF G + +L
Sbjct: 47 SATANGPSSNSRSCPSPMQTGGSNDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKL 106
Query: 133 SMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKP 191
++ G FV P +A A+N L + +T+KV+YA+ +
Sbjct: 107 VRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS--------- 157
Query: 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD--NPR-RSAGYGFVSFKSKK 248
NL+++ L K+L + F G ++++ ++ P S G GF+ F +
Sbjct: 158 IRDANLYVSGLPKTMTQKELEQLFSQYG-RIITSRILVDQVTGPTGGSRGVGFIRFDKRI 216
Query: 249 VAETAISAFQGK 260
AE AI G+
Sbjct: 217 EAEEAIKGLNGQ 228
>gi|311248628|ref|XP_003123218.1| PREDICTED: LOW QUALITY PROTEIN: ELAV-like protein 3-like [Sus
scrofa]
Length = 359
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 78/166 (46%), Gaps = 17/166 (10%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR----NRGLAFVTMGSPDEA 154
SKT L+ +P T ++ ++LF G++ DIE +++ + G FV P++A
Sbjct: 36 SKTNLIVNYLPQNMTQDEFKSLF---GSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDA 92
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
A+N L + + +T+KV+YA+ + NL+++ L K++ +
Sbjct: 93 DKAINTLNGLKLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMSQKEMEQL 143
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
F G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 144 FSQYG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 188
>gi|443722844|gb|ELU11546.1| hypothetical protein CAPTEDRAFT_164502 [Capitella teleta]
Length = 629
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 88/181 (48%), Gaps = 14/181 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N+ T + +R +FE G ++ ++ + + RG FV+ + A A+
Sbjct: 192 TNVYVKNLNETMDDKKLREMFEVFGKIISAKMMNTEEGQKRGFGFVSFDDHEAAAKAVEE 251
Query: 161 LESYEFEGRTLKVNYAKIKK------KNPFPPVQPK---PFATFNLFIANLSFEARAKDL 211
L + E EG+ + V A+ K K F ++ + + NL++ NL + + L
Sbjct: 252 LNNKEVEGKEIYVGRAQKKAERQAELKEKFERMKMERINRYQGVNLYVKNLDEQIDDERL 311
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIAL 269
R+ F S+ + SA V+ R+ G+GFV F S + A A++ G++++ L +AL
Sbjct: 312 RKEF-SQFGTITSARVMTEGG--RTKGFGFVCFSSPEEATKAVTEMNGRIVVAKPLYVAL 368
Query: 270 S 270
+
Sbjct: 369 A 369
Score = 43.9 bits (102), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 68/143 (47%), Gaps = 11/143 (7%)
Query: 121 FEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179
F G VL I + R+ G A+V P +A AL+ + +GR +++ +++
Sbjct: 32 FSTAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALDTMNFDAIKGRPIRIMWSQ-- 89
Query: 180 KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
++P + N+FI NL K L + F + G +++S ++ N S GY
Sbjct: 90 -RDP----SLRKSGVGNIFIKNLDKNIDNKALYDTFSAFG-NILSCKIAMDQNG--SLGY 141
Query: 240 GFVSFKSKKVAETAISAFQGKVI 262
GFV F++++ A +I G ++
Sbjct: 142 GFVHFETEEAARNSIEKVNGMLL 164
Score = 37.4 bits (85), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPD 152
+R Y L +N+ E +R F Q GT+ + M R +G FV SP+
Sbjct: 287 ERINRYQGVNLYVKNLDEQIDDERLRKEFSQFGTITSARV-MTEGGRTKGFGFVCFSSPE 345
Query: 153 EATAALNNLESYEFEGRTLKVNYAKIKK 180
EAT A+ + + L V A+ K+
Sbjct: 346 EATKAVTEMNGRIVVAKPLYVALAQRKE 373
>gi|89902981|ref|YP_525452.1| RNA-binding region RNP-1 [Rhodoferax ferrireducens T118]
gi|89347718|gb|ABD71921.1| RNA-binding region RNP-1 [Rhodoferax ferrireducens T118]
Length = 140
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAALN 159
+L N+P+T ED++ F HGTV ++ M R++G FV MGS EA AA+N
Sbjct: 3 NKLYVGNLPYTFRDEDLQQAFAAHGTVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIN 62
Query: 160 NLESYEFEGRTLKVNYAKIKKKNP 183
+ ++ GR L VN A+ + P
Sbjct: 63 GMNGQQYGGRGLVVNEARPMEARP 86
>gi|410966840|ref|XP_003989935.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Felis catus]
Length = 660
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 81/167 (48%), Gaps = 14/167 (8%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIALS 270
+V+ D RS G+GFV F S + A A++ G+++ L +AL+
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 73/156 (46%), Gaps = 9/156 (5%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G +L ++ + +N ++G AFV + + A A+ + R +
Sbjct: 111 DNKALYDTFSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVF 169
Query: 173 VNYAKIKKKNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD 231
V K +K+ + K F N++I N E + L+E F S+ +S +V+ D
Sbjct: 170 VGRFKSRKEREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVM-RD 225
Query: 232 NPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVI 267
+S G+GFVS++ + A A+ GK I VI
Sbjct: 226 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVI 261
>gi|344287653|ref|XP_003415567.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Loxodonta
africana]
Length = 660
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 81/167 (48%), Gaps = 14/167 (8%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIALS 270
+V+ D RS G+GFV F S + A A++ G+++ L +AL+
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 73/156 (46%), Gaps = 9/156 (5%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G +L ++ + +N ++G AFV + + A A+ + R +
Sbjct: 111 DNKALYDTFSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVF 169
Query: 173 VNYAKIKKKNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD 231
V K +K+ + K F N++I N E + L+E F S+ +S +V+ D
Sbjct: 170 VGRFKSRKEREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVM-RD 225
Query: 232 NPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVI 267
+S G+GFVS++ + A A+ GK I VI
Sbjct: 226 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVI 261
Score = 37.0 bits (84), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ ++ M R++G FV SP
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-MLEDGRSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|119627248|gb|EAX06843.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu
antigen D), isoform CRA_c [Homo sapiens]
Length = 356
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 72/163 (44%), Gaps = 11/163 (6%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T E+ R+LF G + +L ++ G FV P +A A
Sbjct: 47 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 106
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + +T+KV+YA+ + NL+++ L K+L + F
Sbjct: 107 INTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQKELEQLFSQ 157
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 158 YG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 199
>gi|351713677|gb|EHB16596.1| Polyadenylate-binding protein 4 [Heterocephalus glaber]
Length = 661
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 81/167 (48%), Gaps = 14/167 (8%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIALS 270
+V+ D RS G+GFV F S + A A++ G+++ L +AL+
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 73/156 (46%), Gaps = 9/156 (5%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G +L ++ + +N ++G AFV + + A A+ + R +
Sbjct: 111 DNKALYDTFSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVF 169
Query: 173 VNYAKIKKKNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD 231
V K +K+ + K F N++I N E + L+E F S+ +S +V+ D
Sbjct: 170 VGRFKSRKEREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVM-RD 225
Query: 232 NPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVI 267
+S G+GFVS++ + A A+ GK I VI
Sbjct: 226 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVI 261
Score = 37.0 bits (84), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ ++ M R++G FV SP
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-MLEDGRSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|395850849|ref|XP_003797986.1| PREDICTED: ELAV-like protein 3 isoform 2 [Otolemur garnettii]
gi|402904299|ref|XP_003914984.1| PREDICTED: ELAV-like protein 3 isoform 2 [Papio anubis]
Length = 359
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 78/166 (46%), Gaps = 17/166 (10%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR----NRGLAFVTMGSPDEA 154
SKT L+ +P T ++ ++LF G++ DIE +++ + G FV P++A
Sbjct: 36 SKTNLIVNYLPQNMTQDEFKSLF---GSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDA 92
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
A+N L + + +T+KV+YA+ + NL+++ L K++ +
Sbjct: 93 DKAINTLNGLKLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMSQKEMEQL 143
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
F G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 144 FSQYG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 188
>gi|380793569|gb|AFE68660.1| polyadenylate-binding protein 4 isoform 3, partial [Macaca mulatta]
Length = 485
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 85/181 (46%), Gaps = 14/181 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N E ++ LF Q G L +++ +++G FV+ ++A A+
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEE 250
Query: 161 LESYEFEGRTLKVNYAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDL 211
+ E G+ + V A+ K K F ++ + + + NL+I NL + L
Sbjct: 251 MNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 310
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIAL 269
R+ F G + SA+V+ D RS G+GFV F S + A A++ G+++ L +AL
Sbjct: 311 RKEFSPFG-SITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVAL 367
Query: 270 S 270
+
Sbjct: 368 A 368
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 73/156 (46%), Gaps = 9/156 (5%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G +L ++ + +N ++G AFV + + A A+ + R +
Sbjct: 111 DNKALYDTFSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVF 169
Query: 173 VNYAKIKKKNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD 231
V K +K+ + K F N++I N E + L+E F S+ +S +V+ D
Sbjct: 170 VGRFKSRKEREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVM-RD 225
Query: 232 NPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVI 267
+S G+GFVS++ + A A+ GK I +I
Sbjct: 226 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKII 261
>gi|298710527|emb|CBJ25591.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 502
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 75/155 (48%), Gaps = 11/155 (7%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAA 157
+ +L + W +T E +R F ++GT+ DI L M K RG F+ E
Sbjct: 147 EGKLFIGGISWQTTEEGLRHHFGKYGTLADIAL-MKDKYTGHPRGFGFIKF----EDITV 201
Query: 158 LNNLESYE--FEGRTLKVNYAKIKKKNPFPPVQP-KPFATFNLFIANLSFEARAKDLREF 214
L+ + S E +G+ + V A K + P P + +P T +F+ L+ + R++
Sbjct: 202 LDEILSQEHKIDGKVVDVKRAVPKSEAPGPSSRSSRPAETNKIFVGGLAPTVMMAEFRKY 261
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKV 249
F + G VV A V+F +RS G+GFV+F+ V
Sbjct: 262 FETFGG-VVDAVVMFDRQTQRSRGFGFVTFQEDAV 295
>gi|73977009|ref|XP_532585.2| PREDICTED: ELAV-like protein 4 isoform 1 [Canis lupus familiaris]
gi|291398932|ref|XP_002715154.1| PREDICTED: ELAV-like 4-like isoform 5 [Oryctolagus cuniculus]
gi|426215486|ref|XP_004002003.1| PREDICTED: ELAV-like protein 4 isoform 3 [Ovis aries]
Length = 366
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 72/163 (44%), Gaps = 11/163 (6%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T E+ R+LF G + +L ++ G FV P +A A
Sbjct: 44 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 103
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + +T+KV+YA+ + NL+++ L K+L + F
Sbjct: 104 INTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQKELEQLFSQ 154
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 155 YGR-IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 196
>gi|348523079|ref|XP_003449051.1| PREDICTED: nucleolin-like isoform 1 [Oreochromis niloticus]
Length = 700
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 86/176 (48%), Gaps = 20/176 (11%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAAL 158
SKT LV N+ + +T E +++ FE+ + I + R +G AF+ S D+A AL
Sbjct: 461 SKT-LVVNNLSFNATEEVLQSTFEK---AVSIRIPQRD-GRPKGFAFLEFESTDDAKDAL 515
Query: 159 NNLESYEFEGRTLKVNYAKIK---KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFF 215
N + E EGR++++ Y++ + + N P T LF+ LS + + L++ F
Sbjct: 516 ENFNNTEIEGRSIRLEYSQSRDWNRGNSGP--------TKTLFVKGLSEDTTEETLKDAF 567
Query: 216 ISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271
EG V+A ++ + S G+GFV F ++ + A A + I + L Y
Sbjct: 568 --EG--AVAARIVTDRDTGSSKGFGFVDFSNEDDCKAAKEAMEDGEIDGSKVTLDY 619
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 84/180 (46%), Gaps = 14/180 (7%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
+ ++E+ ++T L +N+P+++T +D++ +F+ ++I + N+G+A+V +
Sbjct: 367 DSKKEKDART-LFVKNLPFSATADDLKEIFKD---AVEIRVPPGQNTSNKGIAYVEFKTE 422
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDL 211
+A + + E +GR++ ++Y K A+ L + NLSF A + L
Sbjct: 423 ADAERTMEETQGSEVQGRSIIIDYTGEKSHMGARA----SAASKTLVVNNLSFNATEEVL 478
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271
+ F VS + D R G+ F+ F+S A+ A+ F I I L Y
Sbjct: 479 QSTF----EKAVSIRIPQRDG--RPKGFAFLEFESTDDAKDALENFNNTEIEGRSIRLEY 532
>gi|338721769|ref|XP_003364429.1| PREDICTED: ELAV-like protein 4 [Equus caballus]
Length = 371
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 82/189 (43%), Gaps = 11/189 (5%)
Query: 73 SATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIEL 132
S+T+ P ++ + + + SKT L+ +P T E+ R+LF G + +L
Sbjct: 23 SSTSNGPSSNNRNCPSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKL 82
Query: 133 SMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKP 191
++ G FV P +A A+N L + +T+KV+YA+ +
Sbjct: 83 VRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS--------- 133
Query: 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAE 251
NL+++ L K+L + F G ++++ ++ S G GF+ F + AE
Sbjct: 134 IRDANLYVSGLPKTMTQKELEQLFSQYG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAE 192
Query: 252 TAISAFQGK 260
AI G+
Sbjct: 193 EAIKGLNGQ 201
>gi|355745175|gb|EHH49800.1| hypothetical protein EGM_00521 [Macaca fascicularis]
Length = 635
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 81/167 (48%), Gaps = 14/167 (8%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 180 ESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVG 239
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 240 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 298
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIALS 270
+V+ D RS G+GFV F S + A A++ G+++ L +AL+
Sbjct: 299 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 343
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 73/156 (46%), Gaps = 9/156 (5%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G +L ++ + +N ++G AFV + + A A+ + R +
Sbjct: 86 DNKALYDTFSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVF 144
Query: 173 VNYAKIKKKNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD 231
V K +K+ + K F N++I N E + L+E F S+ +S +V+ D
Sbjct: 145 VGRFKSRKEREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVM-RD 200
Query: 232 NPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVI 267
+S G+GFVS++ + A A+ GK I +I
Sbjct: 201 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKII 236
>gi|341889735|gb|EGT45670.1| CBN-ASD-1 protein [Caenorhabditis brenneri]
Length = 467
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 53/100 (53%), Gaps = 5/100 (5%)
Query: 89 VNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTM 148
++ E RL N+P+ D++A+FE++GTV+D+E+ + + ++G FVTM
Sbjct: 118 IDRSNSSEGDGNRRLHVSNIPFKYREPDLQAMFEKYGTVVDVEIIFNERG-SKGFGFVTM 176
Query: 149 GSPDEATAALNNLESYEFEGRTLKVNYAK----IKKKNPF 184
SP +A A + EGR ++VN A KKK P
Sbjct: 177 DSPADADRARQEIHGKLIEGRRVEVNMATQRVHTKKKAPL 216
Score = 43.9 bits (102), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
L ++N+ F+ R DL+ F G VV E+IF N R S G+GFV+ S A+ A
Sbjct: 132 LHVSNIPFKYREPDLQAMFEKYGT-VVDVEIIF--NERGSKGFGFVTMDSPADADRARQE 188
Query: 257 FQGKVI 262
GK+I
Sbjct: 189 IHGKLI 194
>gi|299751777|ref|XP_001830476.2| glycine-rich RNA binding protein [Coprinopsis cinerea okayama7#130]
gi|298409530|gb|EAU91356.2| glycine-rich RNA binding protein [Coprinopsis cinerea okayama7#130]
Length = 142
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYE 165
N+ W +T + +R F Q+G VLD I + R+RG FVT + +EA AA+ +L E
Sbjct: 9 NLSWNTTDDSLRQAFSQYGNVLDSIVMRDRDTGRSRGFGFVTYSATEEADAAIASLHDQE 68
Query: 166 FEGRTLKVNYAKIK 179
+GR +KVN A +
Sbjct: 69 LDGRRIKVNIANAR 82
>gi|50409715|ref|XP_456900.1| DEHA2A13134p [Debaryomyces hansenii CBS767]
gi|49652564|emb|CAG84877.1| DEHA2A13134p [Debaryomyces hansenii CBS767]
Length = 447
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 76/179 (42%), Gaps = 13/179 (7%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAALNNL 161
L + W+ E +R FE G V+ + M S ++RG +V S A AL
Sbjct: 200 LFVGRLSWSIDDEWLRREFEPVGGVISARVIMERSTGKSRGYGYVDFDSKSAAEKALQEY 259
Query: 162 ESYEFEGR--TLKVNYAKIKKKNP-------FPPVQPKPFATFNLFIANLSFEARAKDLR 212
+ E +GR L ++ K NP F V P T LF+ NLSF A L
Sbjct: 260 QGKELDGRPINLDMSTGKPHASNPNTDRAKQFGDVPSAPSDT--LFVGNLSFNAERDSLF 317
Query: 213 EFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271
F G VVS + H + ++ G+G+V F S A+ A+ A G+ + L +
Sbjct: 318 NTFGEYGT-VVSCRIPTHPDTQQPKGFGYVQFSSVDEAKAALEALNGEYLDGRACRLDF 375
>gi|410263248|gb|JAA19590.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|410263254|gb|JAA19593.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 660
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 81/167 (48%), Gaps = 14/167 (8%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIALS 270
+V+ D RS G+GFV F S + A A++ G+++ L +AL+
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 73/156 (46%), Gaps = 9/156 (5%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G +L ++ + +N ++G AFV + + A A+ + R +
Sbjct: 111 DNKALYDTFSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVF 169
Query: 173 VNYAKIKKKNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD 231
V K +K+ + K F N++I N E + L+E F S+ +S +V+ D
Sbjct: 170 VGRFKSRKEREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVM-RD 225
Query: 232 NPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVI 267
+S G+GFVS++ + A A+ GK I +I
Sbjct: 226 PNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKII 261
>gi|348523081|ref|XP_003449052.1| PREDICTED: nucleolin-like isoform 2 [Oreochromis niloticus]
Length = 706
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 86/176 (48%), Gaps = 20/176 (11%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAAL 158
SKT LV N+ + +T E +++ FE+ + I + R +G AF+ S D+A AL
Sbjct: 467 SKT-LVVNNLSFNATEEVLQSTFEK---AVSIRIPQRD-GRPKGFAFLEFESTDDAKDAL 521
Query: 159 NNLESYEFEGRTLKVNYAKIK---KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFF 215
N + E EGR++++ Y++ + + N P T LF+ LS + + L++ F
Sbjct: 522 ENFNNTEIEGRSIRLEYSQSRDWNRGNSGP--------TKTLFVKGLSEDTTEETLKDAF 573
Query: 216 ISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271
EG V+A ++ + S G+GFV F ++ + A A + I + L Y
Sbjct: 574 --EG--AVAARIVTDRDTGSSKGFGFVDFSNEDDCKAAKEAMEDGEIDGSKVTLDY 625
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 86/184 (46%), Gaps = 16/184 (8%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
+ ++E+ ++T L +N+P+++T +D++ +F+ ++I + N+G+A+V +
Sbjct: 367 DSKKEKDART-LFVKNLPFSATADDLKEIFKD---AVEIRVPPGQNTSNKGIAYVEFKTE 422
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFN----LFIANLSFEAR 207
+A + + E +GR++ ++Y +K+ F+ L + NLSF A
Sbjct: 423 ADAERTMEETQGSEVQGRSIIIDY--TGEKSHMGARASGKLEIFSASKTLVVNNLSFNAT 480
Query: 208 AKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVI 267
+ L+ F VS + D R G+ F+ F+S A+ A+ F I I
Sbjct: 481 EEVLQSTF----EKAVSIRIPQRDG--RPKGFAFLEFESTDDAKDALENFNNTEIEGRSI 534
Query: 268 ALSY 271
L Y
Sbjct: 535 RLEY 538
>gi|56758360|gb|AAW27320.1| SJCHGC06322 protein [Schistosoma japonicum]
Length = 721
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 81/182 (44%), Gaps = 18/182 (9%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLE 162
L +N P + +E ++ +F + G + + ++ +++G FV PD A A+ +
Sbjct: 194 LYVKNFPPETDNEKLKEMFSEFGEIKSACVMKDNEGKSKGFGFVCYLDPDHAENAVRTMH 253
Query: 163 SYEFEGRTLKVNYA------------KIKKKNPFPPVQPKPFATFNLFIANLSFEARAKD 210
E EGR L A KI+K+ Q NL++ NL K
Sbjct: 254 GKEIEGRVLYCARAQRKEERQEELKQKIEKQR--AERQSNYMLNVNLYVKNLDDNIDDKR 311
Query: 211 LREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIA 268
L E F G + SA+V+ D RS G+GFV F + + A A++ G +I L +A
Sbjct: 312 LEEAFSVHG-SITSAKVM-KDANNRSKGFGFVCFANPEQAARAVTDMNGTIIGSKPLYVA 369
Query: 269 LS 270
L+
Sbjct: 370 LA 371
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 69/152 (45%), Gaps = 10/152 (6%)
Query: 117 IRALFEQHGTVLDIELSMHSKNRNR-GLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175
++A F + G VL + R G +V P A AL L GR +++ +
Sbjct: 29 LQAKFSEIGPVLSARVCRDLATRQSLGYGYVNFEDPKHAEQALEVLNYEPLMGRPIRIMW 88
Query: 176 AKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRR 235
++ ++P + N+FI NL K+L + F G ++S +++ +N +
Sbjct: 89 SQ---RDP----SLRKSGKGNIFIKNLDKSIEQKELYDTFSFFGR-ILSCKIVMDEN-GQ 139
Query: 236 SAGYGFVSFKSKKVAETAISAFQGKVIMCLVI 267
S GYGFV F+ ++ AE AI +I V+
Sbjct: 140 SKGYGFVHFEKEECAERAIEKINNMIIRDRVV 171
>gi|221316771|ref|NP_001138248.1| ELAV-like protein 4 isoform 4 [Homo sapiens]
gi|114556460|ref|XP_001135439.1| PREDICTED: ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 isoform 8 [Pan troglodytes]
gi|332219809|ref|XP_003259050.1| PREDICTED: ELAV-like protein 4 isoform 5 [Nomascus leucogenys]
gi|395855043|ref|XP_003799981.1| PREDICTED: ELAV-like protein 4 isoform 4 [Otolemur garnettii]
gi|397518910|ref|XP_003829618.1| PREDICTED: ELAV-like protein 4 isoform 5 [Pan paniscus]
gi|402854511|ref|XP_003891911.1| PREDICTED: ELAV-like protein 4 isoform 5 [Papio anubis]
gi|426329581|ref|XP_004025817.1| PREDICTED: ELAV-like protein 4 isoform 5 [Gorilla gorilla gorilla]
gi|14280323|gb|AAK57538.1| HUD3 [Homo sapiens]
Length = 366
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 72/163 (44%), Gaps = 11/163 (6%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T E+ R+LF G + +L ++ G FV P +A A
Sbjct: 44 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 103
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + +T+KV+YA+ + NL+++ L K+L + F
Sbjct: 104 INTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQKELEQLFSQ 154
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 155 YGR-IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 196
>gi|395730528|ref|XP_003775743.1| PREDICTED: ELAV-like protein 4 [Pongo abelii]
Length = 366
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 72/163 (44%), Gaps = 11/163 (6%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T E+ R+LF G + +L ++ G FV P +A A
Sbjct: 44 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 103
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + +T+KV+YA+ + NL+++ L K+L + F
Sbjct: 104 INTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQKELEQLFSQ 154
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 155 YGR-IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 196
>gi|168024568|ref|XP_001764808.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162684102|gb|EDQ70507.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 414
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 76/155 (49%), Gaps = 9/155 (5%)
Query: 120 LFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178
LF Q G V+++ + N ++G F+ S D+A A+ L + G+ ++VN A
Sbjct: 44 LFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEDDADYAIKILNMIKLYGKPIRVNKASQ 103
Query: 179 KKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAG 238
KK+ NLF+ NL + K L + F + G V + +++ + S G
Sbjct: 104 DKKSLD--------VGANLFVGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDSGNSRG 155
Query: 239 YGFVSFKSKKVAETAISAFQGKVIMCLVIALSYLY 273
+GF+S+ S + +++AI A G+ + I +SY Y
Sbjct: 156 FGFISYDSFEASDSAIEAMNGQYLCNRAITVSYAY 190
>gi|162462398|ref|NP_001104824.1| hnRNPA/B-like 28 [Bombyx mori]
gi|161334098|gb|ABX60898.1| hnRNPA/B-like protein [Bombyx mori]
Length = 250
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 75/154 (48%), Gaps = 9/154 (5%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEA 154
++ K +L + W ++ E+++ F ++G V+D + +S+ R+RG FVT P
Sbjct: 2 DDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLV 61
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF-NLFIANLSFEARAKDLRE 213
L N ++ +GRT+ K NP +PK + +F+ L DLR
Sbjct: 62 NLVLQN-GPHQLDGRTIDP-----KPCNPRTLQKPKRGGGYPKVFLGGLPSNVTETDLRV 115
Query: 214 FFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSK 247
FF G V+ +++ ++S G+GF+SF+ +
Sbjct: 116 FFGRYG-KVMEVVIMYDQEKKKSRGFGFLSFEDE 148
>gi|4504715|ref|NP_003810.1| polyadenylate-binding protein 4 isoform 2 [Homo sapiens]
gi|332808510|ref|XP_003308042.1| PREDICTED: polyadenylate-binding protein 4 [Pan troglodytes]
gi|395730716|ref|XP_003775777.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Pongo abelii]
gi|397488844|ref|XP_003815453.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Pan paniscus]
gi|426329066|ref|XP_004025565.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Gorilla
gorilla gorilla]
gi|12229875|sp|Q13310.1|PABP4_HUMAN RecName: Full=Polyadenylate-binding protein 4; Short=PABP-4;
Short=Poly(A)-binding protein 4; AltName:
Full=Activated-platelet protein 1; Short=APP-1; AltName:
Full=Inducible poly(A)-binding protein; Short=iPABP
gi|1163177|gb|AAC50350.1| inducible poly(A)-binding protein [Homo sapiens]
gi|2801403|gb|AAB97309.1| polyadenylate binding protein [Homo sapiens]
gi|119627669|gb|EAX07264.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_d [Homo sapiens]
gi|410227600|gb|JAA11019.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|1585757|prf||2201474A inducible poly(A)-binding protein
Length = 644
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 85/181 (46%), Gaps = 14/181 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N E ++ LF Q G L +++ +++G FV+ ++A A+
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEE 250
Query: 161 LESYEFEGRTLKVNYAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDL 211
+ E G+ + V A+ K K F ++ + + + NL+I NL + L
Sbjct: 251 MNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 310
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIAL 269
R+ F G + SA+V+ D RS G+GFV F S + A A++ G+++ L +AL
Sbjct: 311 RKEFSPFG-SITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVAL 367
Query: 270 S 270
+
Sbjct: 368 A 368
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 73/156 (46%), Gaps = 9/156 (5%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G +L ++ + +N ++G AFV + + A A+ + R +
Sbjct: 111 DNKALYDTFSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVF 169
Query: 173 VNYAKIKKKNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD 231
V K +K+ + K F N++I N E + L+E F S+ +S +V+ D
Sbjct: 170 VGRFKSRKEREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVM-RD 225
Query: 232 NPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVI 267
+S G+GFVS++ + A A+ GK I +I
Sbjct: 226 PNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKII 261
>gi|393245425|gb|EJD52935.1| polyadenylate binding protein [Auricularia delicata TFB-10046 SS5]
Length = 665
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 75/171 (43%), Gaps = 11/171 (6%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N+ E LF + G + LS + ++RG FV S ++A AA+
Sbjct: 228 TNIYVKNLDPELGQEGFEELFGKFGNITSAALSKDEEGKSRGFGFVNFESHEQAAAAVET 287
Query: 161 LESYEFEGRTLKVNYAKIK-------KKNPFPPVQPK--PFATFNLFIANLSFEARAKDL 211
L E GR L V A+ K +K+ Q K + NL+I NL + + L
Sbjct: 288 LHDTEINGRKLYVARAQKKSEREDELRKSYENAKQEKLSKYQGVNLYIKNLEDDIDDEKL 347
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
R F E + +++ + D S G+GFV F S A A+S K+I
Sbjct: 348 RAEF--EPFGTITSCKVMRDEKNTSKGFGFVCFSSPDEATKAVSEMNNKMI 396
Score = 44.7 bits (104), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
+++ +Y L +N+ E +RA FE GT+ ++ KN ++G FV SP
Sbjct: 322 QEKLSKYQGVNLYIKNLEDDIDDEKLRAEFEPFGTITSCKVMRDEKNTSKGFGFVCFSSP 381
Query: 152 DEATAALNNLESYEFEGRTLKVNYAK 177
DEAT A++ + + + L V+ A+
Sbjct: 382 DEATKAVSEMNNKMIGSKPLYVSLAQ 407
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 68/144 (47%), Gaps = 10/144 (6%)
Query: 120 LFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178
+F G V I + + R+ G A+V + + AL+ L + R ++ +++
Sbjct: 66 VFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALDQLNYSLIKNRACRIMWSQ- 124
Query: 179 KKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAG 238
++P + N+FI NL + K L + F + G +V+S +V D S G
Sbjct: 125 --RDP----ALRKTGQGNIFIKNLDEQIDNKALHDTFAAFG-NVLSCKVA-TDEHGNSKG 176
Query: 239 YGFVSFKSKKVAETAISAFQGKVI 262
YGFV +++ + AE AI + G ++
Sbjct: 177 YGFVHYETAEAAENAIKSVNGMLL 200
>gi|403292060|ref|XP_003937075.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 643
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 85/181 (46%), Gaps = 14/181 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N E ++ LF Q G L +++ +++G FV+ ++A A+
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEE 250
Query: 161 LESYEFEGRTLKVNYAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDL 211
+ E G+ + V A+ K K F ++ + + + NL+I NL + L
Sbjct: 251 MNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 310
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIAL 269
R+ F G + SA+V+ D RS G+GFV F S + A A++ G+++ L +AL
Sbjct: 311 RKEFSPFG-SITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVAL 367
Query: 270 S 270
+
Sbjct: 368 A 368
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 73/156 (46%), Gaps = 9/156 (5%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G +L ++ + +N ++G AFV + + A A+ + R +
Sbjct: 111 DNKALYDTFSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVF 169
Query: 173 VNYAKIKKKNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD 231
V K +K+ + K F N++I N E + L+E F S+ +S +V+ D
Sbjct: 170 VGRFKSRKEREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVM-RD 225
Query: 232 NPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVI 267
+S G+GFVS++ + A A+ GK I +I
Sbjct: 226 PNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKII 261
>gi|344241813|gb|EGV97916.1| ELAV-like protein 4 [Cricetulus griseus]
gi|431896875|gb|ELK06139.1| ELAV-like protein 4, partial [Pteropus alecto]
Length = 350
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 73/163 (44%), Gaps = 11/163 (6%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T E+ R+LF G + +L ++ G FV P +A A
Sbjct: 41 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 100
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + +T+KV+YA+ + NL+++ L K+L + F S
Sbjct: 101 INTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQKELEQLF-S 150
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
+ ++++ ++ S G GF+ F + AE AI G+
Sbjct: 151 QYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 193
>gi|119627667|gb|EAX07262.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_b [Homo sapiens]
Length = 645
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 85/181 (46%), Gaps = 14/181 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N E ++ LF Q G L +++ +++G FV+ ++A A+
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEE 250
Query: 161 LESYEFEGRTLKVNYAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDL 211
+ E G+ + V A+ K K F ++ + + + NL+I NL + L
Sbjct: 251 MNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 310
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIAL 269
R+ F G + SA+V+ D RS G+GFV F S + A A++ G+++ L +AL
Sbjct: 311 RKEFSPFG-SITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVAL 367
Query: 270 S 270
+
Sbjct: 368 A 368
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 73/156 (46%), Gaps = 9/156 (5%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G +L ++ + +N ++G AFV + + A A+ + R +
Sbjct: 111 DNKALYDTFSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVF 169
Query: 173 VNYAKIKKKNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD 231
V K +K+ + K F N++I N E + L+E F S+ +S +V+ D
Sbjct: 170 VGRFKSRKEREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVM-RD 225
Query: 232 NPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVI 267
+S G+GFVS++ + A A+ GK I +I
Sbjct: 226 PNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKII 261
>gi|125991914|ref|NP_001075075.1| ELAV-like protein 4 [Bos taurus]
gi|73976985|ref|XP_859918.1| PREDICTED: ELAV-like protein 4 isoform 5 [Canis lupus familiaris]
gi|291398926|ref|XP_002715151.1| PREDICTED: ELAV-like 4-like isoform 2 [Oryctolagus cuniculus]
gi|301772324|ref|XP_002921582.1| PREDICTED: ELAV-like protein 4-like [Ailuropoda melanoleuca]
gi|426215482|ref|XP_004002001.1| PREDICTED: ELAV-like protein 4 isoform 1 [Ovis aries]
gi|124829171|gb|AAI33284.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu
antigen D) [Bos taurus]
gi|296489084|tpg|DAA31197.1| TPA: ELAV-like 4 [Bos taurus]
Length = 366
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 73/163 (44%), Gaps = 11/163 (6%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T E+ R+LF G + +L ++ G FV P +A A
Sbjct: 44 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 103
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + +T+KV+YA+ + NL+++ L K+L + F S
Sbjct: 104 INTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQKELEQLF-S 153
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
+ ++++ ++ S G GF+ F + AE AI G+
Sbjct: 154 QYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 196
>gi|125977312|ref|XP_001352689.1| GA21193 [Drosophila pseudoobscura pseudoobscura]
gi|54641438|gb|EAL30188.1| GA21193 [Drosophila pseudoobscura pseudoobscura]
Length = 352
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 73/161 (45%), Gaps = 24/161 (14%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNL 161
+L N+ + ++RALFE++GTV++ ++ + FV M + + A+ NL
Sbjct: 8 KLFIGNLDEKTQATELRALFEKYGTVVECDVVKN-------YGFVHMETEQQGRDAIQNL 60
Query: 162 ESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWD 221
Y +KV AK ++ P T +F+ NL+ + RA ++RE F G
Sbjct: 61 NGYVLNDNAIKVEAAKSRRAPNTP--------TTKIFVGNLTDKTRAPEVRELFQKYGT- 111
Query: 222 VVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
VV +++ + YGFV + AI G+V+
Sbjct: 112 VVECDIVRN--------YGFVHLDCVGDVQDAIKELNGRVV 144
>gi|297664981|ref|XP_002810891.1| PREDICTED: ELAV-like protein 4 isoform 4 [Pongo abelii]
Length = 366
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 73/163 (44%), Gaps = 11/163 (6%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T E+ R+LF G + +L ++ G FV P +A A
Sbjct: 44 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 103
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + +T+KV+YA+ + NL+++ L K+L + F S
Sbjct: 104 INTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQKELEQLF-S 153
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
+ ++++ ++ S G GF+ F + AE AI G+
Sbjct: 154 QYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 196
>gi|119627673|gb|EAX07268.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_h [Homo sapiens]
Length = 661
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 81/167 (48%), Gaps = 14/167 (8%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIALS 270
+V+ D RS G+GFV F S + A A++ G+++ L +AL+
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 73/156 (46%), Gaps = 9/156 (5%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G +L ++ + +N ++G AFV + + A A+ + R +
Sbjct: 111 DNKALYDTFSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVF 169
Query: 173 VNYAKIKKKNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD 231
V K +K+ + K F N++I N E + L+E F S+ +S +V+
Sbjct: 170 VGRFKSRKEREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVMRDP 226
Query: 232 NPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVI 267
N + S G+GFVS++ + A A+ GK I +I
Sbjct: 227 NGK-SKGFGFVSYEKHEDANKAVEEMNGKEISGKII 261
>gi|119627249|gb|EAX06844.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu
antigen D), isoform CRA_d [Homo sapiens]
Length = 365
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 72/163 (44%), Gaps = 11/163 (6%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T E+ R+LF G + +L ++ G FV P +A A
Sbjct: 43 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 102
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + +T+KV+YA+ + NL+++ L K+L + F
Sbjct: 103 INTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQKELEQLFSQ 153
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 154 YGR-IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 195
>gi|208431833|ref|NP_001129125.1| polyadenylate-binding protein 4 isoform 1 [Homo sapiens]
gi|332808508|ref|XP_513344.3| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Pan
troglodytes]
gi|395730714|ref|XP_002811047.2| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Pongo abelii]
gi|397488842|ref|XP_003815452.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Pan paniscus]
gi|426329062|ref|XP_004025563.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Gorilla
gorilla gorilla]
gi|66267552|gb|AAH94755.1| PABPC4 protein [Homo sapiens]
gi|119627668|gb|EAX07263.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_c [Homo sapiens]
gi|410227598|gb|JAA11018.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|410227604|gb|JAA11021.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 660
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 81/167 (48%), Gaps = 14/167 (8%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIALS 270
+V+ D RS G+GFV F S + A A++ G+++ L +AL+
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 73/156 (46%), Gaps = 9/156 (5%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G +L ++ + +N ++G AFV + + A A+ + R +
Sbjct: 111 DNKALYDTFSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVF 169
Query: 173 VNYAKIKKKNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD 231
V K +K+ + K F N++I N E + L+E F S+ +S +V+ D
Sbjct: 170 VGRFKSRKEREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVM-RD 225
Query: 232 NPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVI 267
+S G+GFVS++ + A A+ GK I +I
Sbjct: 226 PNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKII 261
>gi|410263250|gb|JAA19591.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 644
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 85/181 (46%), Gaps = 14/181 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N E ++ LF Q G L +++ +++G FV+ ++A A+
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEE 250
Query: 161 LESYEFEGRTLKVNYAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDL 211
+ E G+ + V A+ K K F ++ + + + NL+I NL + L
Sbjct: 251 MNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 310
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIAL 269
R+ F G + SA+V+ D RS G+GFV F S + A A++ G+++ L +AL
Sbjct: 311 RKEFSPFG-SITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVAL 367
Query: 270 S 270
+
Sbjct: 368 A 368
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 73/156 (46%), Gaps = 9/156 (5%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G +L ++ + +N ++G AFV + + A A+ + R +
Sbjct: 111 DNKALYDTFSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVF 169
Query: 173 VNYAKIKKKNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD 231
V K +K+ + K F N++I N E + L+E F S+ +S +V+ D
Sbjct: 170 VGRFKSRKEREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVM-RD 225
Query: 232 NPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVI 267
+S G+GFVS++ + A A+ GK I +I
Sbjct: 226 PNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKII 261
>gi|221316767|ref|NP_001138246.1| ELAV-like protein 4 isoform 2 [Homo sapiens]
gi|384475927|ref|NP_001245109.1| ELAV-like protein 4 [Macaca mulatta]
gi|114556464|ref|XP_001135692.1| PREDICTED: ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 isoform 11 [Pan troglodytes]
gi|332219803|ref|XP_003259047.1| PREDICTED: ELAV-like protein 4 isoform 2 [Nomascus leucogenys]
gi|395855037|ref|XP_003799978.1| PREDICTED: ELAV-like protein 4 isoform 1 [Otolemur garnettii]
gi|397518904|ref|XP_003829615.1| PREDICTED: ELAV-like protein 4 isoform 2 [Pan paniscus]
gi|402854505|ref|XP_003891908.1| PREDICTED: ELAV-like protein 4 isoform 2 [Papio anubis]
gi|426329575|ref|XP_004025814.1| PREDICTED: ELAV-like protein 4 isoform 2 [Gorilla gorilla gorilla]
gi|14280327|gb|AAK57540.1| HUD1 [Homo sapiens]
gi|380810346|gb|AFE77048.1| ELAV-like protein 4 isoform 2 [Macaca mulatta]
Length = 366
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 73/163 (44%), Gaps = 11/163 (6%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T E+ R+LF G + +L ++ G FV P +A A
Sbjct: 44 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 103
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + +T+KV+YA+ + NL+++ L K+L + F S
Sbjct: 104 INTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQKELEQLF-S 153
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
+ ++++ ++ S G GF+ F + AE AI G+
Sbjct: 154 QYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 196
>gi|332248417|ref|XP_003273360.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Nomascus
leucogenys]
gi|383411099|gb|AFH28763.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
gi|384941234|gb|AFI34222.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
Length = 631
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 81/167 (48%), Gaps = 14/167 (8%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIALS 270
+V+ D RS G+GFV F S + A A++ G+++ L +AL+
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 73/156 (46%), Gaps = 9/156 (5%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G +L ++ + +N ++G AFV + + A A+ + R +
Sbjct: 111 DNKALYDTFSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVF 169
Query: 173 VNYAKIKKKNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD 231
V K +K+ + K F N++I N E + L+E F S+ +S +V+ D
Sbjct: 170 VGRFKSRKEREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVM-RD 225
Query: 232 NPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVI 267
+S G+GFVS++ + A A+ GK I +I
Sbjct: 226 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKII 261
>gi|332248415|ref|XP_003273359.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Nomascus
leucogenys]
gi|383411101|gb|AFH28764.1| polyadenylate-binding protein 4 isoform 2 [Macaca mulatta]
gi|384941236|gb|AFI34223.1| polyadenylate-binding protein 4 isoform 2 [Macaca mulatta]
Length = 644
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 81/167 (48%), Gaps = 14/167 (8%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIALS 270
+V+ D RS G+GFV F S + A A++ G+++ L +AL+
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 73/156 (46%), Gaps = 9/156 (5%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G +L ++ + +N ++G AFV + + A A+ + R +
Sbjct: 111 DNKALYDTFSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVF 169
Query: 173 VNYAKIKKKNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD 231
V K +K+ + K F N++I N E + L+E F S+ +S +V+ D
Sbjct: 170 VGRFKSRKEREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVM-RD 225
Query: 232 NPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVI 267
+S G+GFVS++ + A A+ GK I +I
Sbjct: 226 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKII 261
Score = 37.0 bits (84), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ ++ M R++G FV SP
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-MLEDGRSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|48734702|gb|AAH71591.1| PABPC4 protein [Homo sapiens]
Length = 660
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 81/167 (48%), Gaps = 14/167 (8%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIALS 270
+V+ D RS G+GFV F S + A A++ G+++ L +AL+
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 73/156 (46%), Gaps = 9/156 (5%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G +L ++ + +N ++G AFV + + A A+ + R +
Sbjct: 111 DNKALYDTFSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVF 169
Query: 173 VNYAKIKKKNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD 231
V K +K+ + K F N++I N E + L+E F S+ +S +V+
Sbjct: 170 VGRFKSRKEREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVMRDP 226
Query: 232 NPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVI 267
N + S G+GFVS++ + A A+ GK I +I
Sbjct: 227 NGK-SKGFGFVSYEKHEDANKAVEEMNGKEISGKII 261
>gi|402854031|ref|XP_003891684.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Papio anubis]
Length = 631
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 81/167 (48%), Gaps = 14/167 (8%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIALS 270
+V+ D RS G+GFV F S + A A++ G+++ L +AL+
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 73/156 (46%), Gaps = 9/156 (5%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G +L ++ + +N ++G AFV + + A A+ + R +
Sbjct: 111 DNKALYDTFSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVF 169
Query: 173 VNYAKIKKKNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD 231
V K +K+ + K F N++I N E + L+E F S+ +S +V+ D
Sbjct: 170 VGRFKSRKEREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVM-RD 225
Query: 232 NPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVI 267
+S G+GFVS++ + A A+ GK I +I
Sbjct: 226 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKII 261
>gi|193650237|ref|XP_001943392.1| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 650
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 88/189 (46%), Gaps = 18/189 (9%)
Query: 89 VNTEQREEEYSK-----TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGL 143
V RE+E + T + +N+ +++ +F+++GT+ ++ +RG
Sbjct: 166 VGRNDREKELGQRAKLYTNVYIKNIDENVNEKELFEMFKKYGTITSCKVMFKDDGSSRGF 225
Query: 144 AFVTMGSPDEATAALNNLESYEF-EGRTLKVNYAK--------IKKK-NPFPPVQPKPFA 193
FV P EA A+ L + EG+T VN A+ +K+K + + +
Sbjct: 226 GFVAFEDPKEAEKAVTELHGKKSPEGKTYYVNRAQKKTERQQELKRKFEQYKIERINRYQ 285
Query: 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETA 253
NL++ NL + LR F + G + SA+V+ D RS G+GFV F S + A A
Sbjct: 286 GVNLYVKNLDDTIDDERLRREFSAFGT-IKSAKVMMDDG--RSKGFGFVYFSSPEEATKA 342
Query: 254 ISAFQGKVI 262
++ G+++
Sbjct: 343 VTDMNGRIV 351
Score = 40.8 bits (94), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 74/155 (47%), Gaps = 15/155 (9%)
Query: 114 HEDIR--ALFEQH---GTVLDIELSMHSKNRNR-GLAFVTMGSPDEATAALNNLESYEFE 167
H D+ LFE+ G +L I + H R+ G A+V + +A AL+ + +
Sbjct: 10 HSDVTEAMLFEKFSTVGAILSIRVCRHVITRSSLGYAYVNFQNIADAERALDTMNFDILK 69
Query: 168 GRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEV 227
G +++ +++ ++P + N+FI NL K + + F + G +++S +V
Sbjct: 70 GHPMRIMWSQ---RDP----SLRKSGVGNVFIKNLDRSIDNKAMYDTFSAFG-NILSCKV 121
Query: 228 IFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
D S GYGFV F++K+ A +I G ++
Sbjct: 122 A-QDETGNSKGYGFVHFETKQSATQSIEKVNGMLL 155
Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPD 152
+R Y L +N+ T E +R F GT+ ++ M R++G FV SP+
Sbjct: 279 ERINRYQGVNLYVKNLDDTIDDERLRREFSAFGTIKSAKV-MMDDGRSKGFGFVYFSSPE 337
Query: 153 EATAALNNLESYEFEGRTLKVNYAKIKK 180
EAT A+ ++ + L V A+ KK
Sbjct: 338 EATKAVTDMNGRIVGTKPLYVTLAQRKK 365
>gi|221316773|ref|NP_001138249.1| ELAV-like protein 4 isoform 5 [Homo sapiens]
gi|114556458|ref|XP_001135525.1| PREDICTED: ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 isoform 9 [Pan troglodytes]
gi|332219805|ref|XP_003259048.1| PREDICTED: ELAV-like protein 4 isoform 3 [Nomascus leucogenys]
gi|397518908|ref|XP_003829617.1| PREDICTED: ELAV-like protein 4 isoform 4 [Pan paniscus]
gi|402854507|ref|XP_003891909.1| PREDICTED: ELAV-like protein 4 isoform 3 [Papio anubis]
gi|426329577|ref|XP_004025815.1| PREDICTED: ELAV-like protein 4 isoform 3 [Gorilla gorilla gorilla]
gi|119627250|gb|EAX06845.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu
antigen D), isoform CRA_e [Homo sapiens]
gi|221041752|dbj|BAH12553.1| unnamed protein product [Homo sapiens]
Length = 369
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 72/163 (44%), Gaps = 11/163 (6%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T E+ R+LF G + +L ++ G FV P +A A
Sbjct: 47 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 106
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + +T+KV+YA+ + NL+++ L K+L + F
Sbjct: 107 INTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQKELEQLFSQ 157
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 158 YGR-IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 199
>gi|608549|gb|AAA96940.1| ribonucleoprotein [Danio rerio]
gi|68085524|gb|AAH65965.2| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu
antigen D) [Danio rerio]
Length = 367
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 80/191 (41%), Gaps = 12/191 (6%)
Query: 73 SATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIEL 132
SAT P +S S + + SKT L+ +P T E+ R+LF G + +L
Sbjct: 16 SATANGPSSNSRSCPSPMQTGGSNDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKL 75
Query: 133 SMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKP 191
++ G FV P +A A+N L + +T+KV+YA+ +
Sbjct: 76 VRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS--------- 126
Query: 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFH-DNPR-RSAGYGFVSFKSKKV 249
NL+++ L K+L + F G + S ++ P S G GF+ F +
Sbjct: 127 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGPTGGSRGVGFIRFDKRIE 186
Query: 250 AETAISAFQGK 260
AE AI G+
Sbjct: 187 AEEAIKGLNGQ 197
>gi|327305247|ref|XP_003237315.1| nucleic acid-binding protein [Trichophyton rubrum CBS 118892]
gi|326460313|gb|EGD85766.1| nucleic acid-binding protein [Trichophyton rubrum CBS 118892]
Length = 293
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 79/167 (47%), Gaps = 10/167 (5%)
Query: 94 REEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDE 153
R E K + N+ + T D++ ++G VL + S+ +RG +V S +E
Sbjct: 75 RPEPQPKATVYVGNILFDITAADLKEYASKYGKVLGTRIIYDSRGLSRGFGYVKFESVEE 134
Query: 154 ATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLRE 213
A A++ + E+EGR L VN+A++ ++ P + +P T +F+ N++ + +DL
Sbjct: 135 AKKAIDEMHLSEYEGRKLSVNFAQVDLRDEQPQRKMEP--TRTIFVGNIAHQVTDRDLHA 192
Query: 214 FF--ISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ 258
F I +DV A PR G+ F E+AI+ F+
Sbjct: 193 LFDDIPNVFDVRVAVDRRTGMPR---GFAHAEFTD---VESAIAGFE 233
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Query: 184 FPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVS 243
PP +P+P +++ N+ F+ A DL+E+ + + V I +D+ S G+G+V
Sbjct: 71 LPPSRPEPQPKATVYVGNILFDITAADLKEY--ASKYGKVLGTRIIYDSRGLSRGFGYVK 128
Query: 244 FKS-----KKVAETAISAFQGKVI 262
F+S K + E +S ++G+ +
Sbjct: 129 FESVEEAKKAIDEMHLSEYEGRKL 152
>gi|542846|pir||JC2116 hippocampal 38K autoantigen protein - human
gi|2340828|dbj|BAA21838.1| PLE21 protein [Homo sapiens]
Length = 350
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 78/166 (46%), Gaps = 17/166 (10%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR----NRGLAFVTMGSPDEA 154
SKT L+ +P T ++ ++LF G++ DIE +++ + G FV P++A
Sbjct: 28 SKTNLIVNYLPQNMTQDEFKSLF---GSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDA 84
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
A+N L + + +T+KV+YA+ + NL+++ L K++ +
Sbjct: 85 DKAINTLNGLKLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMSQKEMEQL 135
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
F G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 136 FSQYG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 180
>gi|390465924|ref|XP_002750851.2| PREDICTED: ELAV-like protein 4 isoform 1 [Callithrix jacchus]
Length = 366
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 72/163 (44%), Gaps = 11/163 (6%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T E+ R+LF G + +L ++ G FV P +A A
Sbjct: 44 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 103
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + +T+KV+YA+ + NL+++ L K+L + F
Sbjct: 104 INTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQKELEQLFSQ 154
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 155 YGR-IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 196
>gi|348554579|ref|XP_003463103.1| PREDICTED: ELAV-like protein 4 isoform 2 [Cavia porcellus]
Length = 347
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 72/163 (44%), Gaps = 11/163 (6%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T E+ R+LF G + +L ++ G FV P +A A
Sbjct: 37 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 96
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + +T+KV+YA+ + NL+++ L K+L + F
Sbjct: 97 INTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQKELEQLFSQ 147
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 148 YG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 189
>gi|195566472|ref|XP_002106804.1| GD17091 [Drosophila simulans]
gi|194204196|gb|EDX17772.1| GD17091 [Drosophila simulans]
Length = 371
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 82/203 (40%), Gaps = 32/203 (15%)
Query: 78 DPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK 137
D + S+ +V+ E S+T L+ +P T T E++R+LF G + +L
Sbjct: 6 DIVKNGSANGSVDGSNDE---SRTNLIVNYLPQTMTQEEMRSLFSSIGELESCKLVRDKV 62
Query: 138 NRN-------------------RGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178
RN G FV ++A A+N L + + +KV+YA+
Sbjct: 63 TRNLVLPASLTALNPALQQGQSLGYGFVNYVRAEDAEKAVNTLNGLRLQNKVIKVSYARP 122
Query: 179 KKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAG 238
++ NL+++ L DL F S G ++++ ++ + S G
Sbjct: 123 SSES---------IKGANLYVSGLPKNLSQPDLEGMFASFG-KIITSRILCDNISGLSKG 172
Query: 239 YGFVSFKSKKVAETAISAFQGKV 261
GF+ F + AE AI GK
Sbjct: 173 VGFIRFDQRNEAERAIQELNGKT 195
>gi|432095458|gb|ELK26654.1| Polyadenylate-binding protein 4 [Myotis davidii]
Length = 657
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 80/167 (47%), Gaps = 14/167 (8%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 201 ESLKELFSQFGKTLSVKVMRDPTGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVG 260
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + A
Sbjct: 261 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITRA 319
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIALS 270
EV+ D RS G+GFV F S + A A++ G+++ L +AL+
Sbjct: 320 EVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 364
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 73/156 (46%), Gaps = 9/156 (5%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G +L ++ + +N ++G AFV + + A A+ + R +
Sbjct: 107 DNKALYDTFSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVF 165
Query: 173 VNYAKIKKKNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD 231
V K +K+ + K F N++I N E + L+E F S+ +S +V+ D
Sbjct: 166 VGRFKSRKEREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVM-RD 221
Query: 232 NPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVI 267
+S G+GFVS++ + A A+ GK I VI
Sbjct: 222 PTGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVI 257
Score = 38.1 bits (87), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ E+ M R++G FV SP
Sbjct: 281 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITRAEV-MLEDGRSKGFGFVCFSSP 339
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 340 EEATKAVTEMNGRIVGSKPLYVALAQRKEE 369
>gi|395526571|ref|XP_003765434.1| PREDICTED: polyadenylate-binding protein 4 [Sarcophilus harrisii]
Length = 630
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 82/167 (49%), Gaps = 14/167 (8%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF ++G L +++ S +++G FV+ ++A A+ + + G+ + V
Sbjct: 205 ERLKELFSKYGKTLSVKVMTDSSGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIALS 270
+V+ D RS G+GFV F S A A++ G+++ L +AL+
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPDEATKAVTEMNGRIVGSKPLYVALA 368
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 71/151 (47%), Gaps = 9/151 (5%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G +L ++ + +N ++G AFV + D A A+ + R +
Sbjct: 111 DNKALYDTFSAFGNILSCKV-VCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVF 169
Query: 173 VNYAKIKKKNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD 231
V K +K+ + K F N++I N + + L+E F G +S +V+ D
Sbjct: 170 VGRFKSRKEREAELGAKAKEFT--NVYIKNFGDDMDDERLKELFSKYG-KTLSVKVM-TD 225
Query: 232 NPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
+ +S G+GFVSF+ + A A+ GK I
Sbjct: 226 SSGKSKGFGFVSFEKHEDANKAVEEMNGKDI 256
Score = 38.9 bits (89), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ ++ M R++G FV SP
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-MLEDGRSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
DEAT A+ + + L V A+ K++
Sbjct: 344 DEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|444706907|gb|ELW48224.1| Polyadenylate-binding protein 4 [Tupaia chinensis]
Length = 692
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 81/167 (48%), Gaps = 14/167 (8%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPTGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIALS 270
+V+ D RS G+GFV F S + A A++ G+++ L +AL+
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 73/156 (46%), Gaps = 9/156 (5%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G +L ++ + +N ++G AFV + + A A+ + R +
Sbjct: 111 DNKALYDTFSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVF 169
Query: 173 VNYAKIKKKNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD 231
V K +K+ + K F N++I N E + L+E F S+ +S +V+ D
Sbjct: 170 VGRFKSRKEREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVM-RD 225
Query: 232 NPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVI 267
+S G+GFVS++ + A A+ GK I VI
Sbjct: 226 PTGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVI 261
Score = 37.0 bits (84), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ ++ M R++G FV SP
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-MLEDGRSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|365760560|gb|EHN02272.1| Nsr1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 371
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 85/190 (44%), Gaps = 9/190 (4%)
Query: 90 NTEQREEEYSKTRLV-AQNVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVT 147
N +Q+ EE + + + W+ E ++ FE G V+ ++ +R+RG +V
Sbjct: 129 NKKQKNEESGEPATIFVGRLSWSIDDEWLKKEFEHIGGVISARVINERGTDRSRGYGYVD 188
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA------TFNLFIAN 201
+ A A+ ++ E +GR + + + K + K F + LF+ N
Sbjct: 189 FENKSYAEKAIQEMQGKEIDGRPINCDLSTSKPAGNNTNDRAKKFGDTPSEPSDTLFLGN 248
Query: 202 LSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKV 261
LSF A + E F G +VVS + H + G+G+V F S + ++ A+ + QG+
Sbjct: 249 LSFNADRDTIFELFAKHG-EVVSVRIPTHPETEQPKGFGYVQFSSLEDSKKALESLQGEY 307
Query: 262 IMCLVIALSY 271
I + L Y
Sbjct: 308 IDNRPVRLDY 317
>gi|332248413|ref|XP_003273358.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Nomascus
leucogenys]
gi|355557859|gb|EHH14639.1| hypothetical protein EGK_00600 [Macaca mulatta]
gi|383411103|gb|AFH28765.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
gi|384941238|gb|AFI34224.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
Length = 660
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 81/167 (48%), Gaps = 14/167 (8%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIALS 270
+V+ D RS G+GFV F S + A A++ G+++ L +AL+
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 73/156 (46%), Gaps = 9/156 (5%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G +L ++ + +N ++G AFV + + A A+ + R +
Sbjct: 111 DNKALYDTFSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVF 169
Query: 173 VNYAKIKKKNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD 231
V K +K+ + K F N++I N E + L+E F S+ +S +V+ D
Sbjct: 170 VGRFKSRKEREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVM-RD 225
Query: 232 NPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVI 267
+S G+GFVS++ + A A+ GK I +I
Sbjct: 226 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKII 261
>gi|324511674|gb|ADY44854.1| RNA-binding protein Musashi Rbp6 [Ascaris suum]
Length = 345
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 77/170 (45%), Gaps = 16/170 (9%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
++ + W +T E +R F + G V + + + + R RG F+T P L +
Sbjct: 45 KMFIGGLSWQTTAEGLRDYFGKFGEVNECMVMRDPATKRARGFGFITFADPASVEKVLAH 104
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPP-VQPKPF-ATFNLFIANLSFEARAKDLREFFISE 218
+ +E +G+ KI K FP QPK T +FI LS + +D+R +F
Sbjct: 105 -DQHELDGK-------KIDPKVAFPKRAQPKMIIKTKKVFIGGLSATSTLEDMRNYFEQY 156
Query: 219 GWDVVSAEVIFHDNPRRSAGYGFVSFK----SKKVAETAISAFQGKVIMC 264
G V A ++F +R G+GF++F S KV E GK++ C
Sbjct: 157 G-KVEDAMLMFDKTTQRHRGFGFITFDNDDVSDKVCEIHFHEINGKMVEC 205
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 111 TSTHEDIRALFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNNLESYEFEGR 169
TST ED+R FEQ+G V D L + R+RG F+T + D+ + + + +E G+
Sbjct: 143 TSTLEDMRNYFEQYGKVEDAMLMFDKTTQRHRGFGFITFDN-DDVSDKVCEIHFHEINGK 201
Query: 170 TLKVNYAKIKK 180
++ A+ K+
Sbjct: 202 MVECKKAQPKE 212
>gi|297664975|ref|XP_002810888.1| PREDICTED: ELAV-like protein 4 isoform 1 [Pongo abelii]
Length = 369
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 72/163 (44%), Gaps = 11/163 (6%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T E+ R+LF G + +L ++ G FV P +A A
Sbjct: 47 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 106
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + +T+KV+YA+ + NL+++ L K+L + F
Sbjct: 107 INTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQKELEQLFSQ 157
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 158 YGR-IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 199
>gi|346322022|gb|EGX91621.1| ribosome biogenesis protein Nop4 [Cordyceps militaris CM01]
Length = 818
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 97/207 (46%), Gaps = 28/207 (13%)
Query: 82 DSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQ-----HGTVLDIELSMHS 136
DS + AA + ++ E ++ L +++P T+E + F + H TV+ + + S
Sbjct: 24 DSETIAAPSPKKARTEERRS-LFVRSLPPNVTNESLAEFFSEYFPVKHATVVVDQQTKES 82
Query: 137 KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPF--------PPVQ 188
RG FVT+ D+A A L+ ++EGR+++V A+ +++ P +
Sbjct: 83 ----RGFGFVTLADADDAKQAQTVLDKKQWEGRSIRVEVAEPRQRKELAEGAERRQKPGK 138
Query: 189 PKPFATFNLFIANLSFEAR-AKDLREFFISEGWDVVSAEVIFHDNPRRSA---GYGFVSF 244
P+ T L + NL + R ++ L F S G + F D P+ G+GFV+
Sbjct: 139 PEFEPTPKLIVRNLPWSIRNSEQLGHLFRSYG------RIKFADLPKDKGKLKGFGFVTL 192
Query: 245 KSKKVAETAISAFQGKVIMCLVIALSY 271
+ KK AE A+ GK I +A+ +
Sbjct: 193 RGKKNAENALEGVNGKEIDGRTLAVDW 219
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 102 RLVAQNVPWT-STHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
+L+ +N+PW+ E + LF +G + +L K + +G FVT+ A AL
Sbjct: 146 KLIVRNLPWSIRNSEQLGHLFRSYGRIKFADLP-KDKGKLKGFGFVTLRGKKNAENALEG 204
Query: 161 LESYEFEGRTLKVNYA 176
+ E +GRTL V++A
Sbjct: 205 VNGKEIDGRTLAVDWA 220
>gi|345780791|ref|XP_859879.2| PREDICTED: ELAV-like protein 4 isoform 4 [Canis lupus familiaris]
Length = 364
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 72/163 (44%), Gaps = 11/163 (6%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T E+ R+LF G + +L ++ G FV P +A A
Sbjct: 42 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 101
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + +T+KV+YA+ + NL+++ L K+L + F
Sbjct: 102 INTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQKELEQLFSQ 152
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 153 YGR-IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 194
>gi|23271926|gb|AAH36071.1| ELAVL4 protein [Homo sapiens]
Length = 366
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 73/163 (44%), Gaps = 11/163 (6%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T E+ R+LF G + +L ++ G FV P +A A
Sbjct: 44 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 103
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + +T+KV+YA+ + NL+++ L K+L + F S
Sbjct: 104 INTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQKELEQLF-S 153
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
+ ++++ ++ S G GF+ F + AE AI G+
Sbjct: 154 QYGRIITSRILVGQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 196
>gi|403292058|ref|XP_003937074.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 659
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 81/167 (48%), Gaps = 14/167 (8%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIALS 270
+V+ D RS G+GFV F S + A A++ G+++ L +AL+
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 73/156 (46%), Gaps = 9/156 (5%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G +L ++ + +N ++G AFV + + A A+ + R +
Sbjct: 111 DNKALYDTFSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVF 169
Query: 173 VNYAKIKKKNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD 231
V K +K+ + K F N++I N E + L+E F S+ +S +V+ D
Sbjct: 170 VGRFKSRKEREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVM-RD 225
Query: 232 NPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVI 267
+S G+GFVS++ + A A+ GK I +I
Sbjct: 226 PNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKII 261
>gi|347446713|ref|NP_571528.2| ELAV-like protein 4 isoform 3 [Danio rerio]
Length = 403
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 82/192 (42%), Gaps = 14/192 (7%)
Query: 73 SATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIEL 132
SAT P +S S + + SKT L+ +P T E+ R+LF G + +L
Sbjct: 52 SATANGPSSNSRSCPSPMQTGGSNDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKL 111
Query: 133 SMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKP 191
++ G FV P +A A+N L + +T+KV+YA+ +
Sbjct: 112 VRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS--------- 162
Query: 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD--NPR-RSAGYGFVSFKSKK 248
NL+++ L K+L + F G ++++ ++ P S G GF+ F +
Sbjct: 163 IRDANLYVSGLPKTMTQKELEQLFSQYG-RIITSRILVDQVTGPTGGSRGVGFIRFDKRI 221
Query: 249 VAETAISAFQGK 260
AE AI G+
Sbjct: 222 EAEEAIKGLNGQ 233
>gi|242279034|ref|YP_002991163.1| RNP-1 like RNA-binding protein [Desulfovibrio salexigens DSM 2638]
gi|242121928|gb|ACS79624.1| RNP-1 like RNA-binding protein [Desulfovibrio salexigens DSM 2638]
Length = 87
Score = 60.5 bits (145), Expect = 8e-07, Method: Composition-based stats.
Identities = 31/78 (39%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIEL-SMHSKNRNRGLAFVTMGSPDEATAALNNLESYE 165
N+PW++T ED+RA FE +G V+ ++L R RG FV M + A A+ L+ +
Sbjct: 9 NLPWSATEEDVRASFEAYGEVVSVKLIEDRETGRPRGFGFVEMDD-NGAIDAIEALDGKD 67
Query: 166 FEGRTLKVNYAKIKKKNP 183
F GR LKVN A+ ++ P
Sbjct: 68 FGGRNLKVNEARPREARP 85
>gi|168702594|ref|ZP_02734871.1| RNA-binding region RNP-1 [Gemmata obscuriglobus UQM 2246]
Length = 144
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 49/83 (59%), Gaps = 5/83 (6%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVTMGS-PDEATAALNN 160
L N+P+T+T D+ LF +GTV + +S R+RG FV M S DEA AALNN
Sbjct: 6 LYVGNLPFTTTQADLEQLFGNYGTVTKAQVVSDRETGRSRGFGFVEMSSGADEAIAALNN 65
Query: 161 LESYEFEGRTLKVNYAKIKKKNP 183
E++GR L VN AK +++ P
Sbjct: 66 A---EYQGRRLTVNEAKPREERP 85
>gi|118485698|gb|ABK94699.1| unknown [Populus trichocarpa]
Length = 247
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 75/160 (46%), Gaps = 6/160 (3%)
Query: 108 VPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFV---TMGSPDEATAALNNLES 163
+P T+T E+IR+LFE+HG+V+++ L + + + FV T D A AL+N +
Sbjct: 87 IPRTTTEENIRSLFEEHGSVVEVVLPRDKRTGQQQAYCFVKYATFEEADRAIRALHNQHT 146
Query: 164 YEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVV 223
E KV YA +++ P L++ +++ A +++ E F G V
Sbjct: 147 IPGEVAPFKVRYADGERERPVARCSMVGGFVDKLYVGSINKLASKQEIEEIFSPYGH--V 204
Query: 224 SAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
I D ++S G FV F + +A AI G + M
Sbjct: 205 EDVYIARDELKQSRGCAFVKFAHRDMALAAIKGLNGTLTM 244
>gi|49619013|gb|AAT68091.1| KIAA0682-like [Danio rerio]
Length = 927
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRN-RGLAFVTMGSPDEATAALNN 160
RL +N+P+T T ED++ LF +HG + ++ + S + +G AFVT P+ A +AL
Sbjct: 400 RLFIRNMPYTCTEEDLKELFSKHGPLSEVLFPIDSLTKKPKGFAFVTYMIPENAVSALAQ 459
Query: 161 LESYEFEGRTLKVNYAKIKKK 181
L+ + F+GR L V +++KK+
Sbjct: 460 LDGHTFQGRVLHVMASRLKKE 480
Score = 43.5 bits (101), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 76/171 (44%), Gaps = 24/171 (14%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMG-------SPDEAT 155
L +N+ + ++ E ++ F + G V +S K R++ ++MG +P+ A
Sbjct: 704 LFIKNLNFITSEETLQKTFSKCGVVKSCTIS---KKRDKAGKLLSMGYGFVQYKTPEAAQ 760
Query: 156 AALNNLE---------SYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEA 206
A+ L+ + R +K A+ K+K Q T + + N+ F+A
Sbjct: 761 KAMRQLQHCTVDEHQLEVKISEREVKSGVAQAKRKKQTARKQ----TTSKILVRNIPFQA 816
Query: 207 RAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAF 257
K+LRE F + G ++ + + G+GF+ F +K+ A+ A SA
Sbjct: 817 TVKELRELFCTFG-ELKTVRLPKKGIGGSHRGFGFIDFLTKQDAKKAFSAL 866
>gi|410950299|ref|XP_003981845.1| PREDICTED: ELAV-like protein 1 [Felis catus]
Length = 336
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 76/169 (44%), Gaps = 11/169 (6%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGS 150
E ++ +T L+ +P T +++R+LF G V +L + G FV +
Sbjct: 21 EDCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVT 80
Query: 151 PDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKD 210
+A A+N L + +T+KV+YA+ P V NL+I+ L KD
Sbjct: 81 AKDAERAINTLNGLRLQSKTIKVSYAR-----PSSEV----IKDANLYISGLPRTMTQKD 131
Query: 211 LREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ + F G ++++ V+ S G F+ F + AE AI++F G
Sbjct: 132 VEDMFSRFGR-IINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 179
Score = 38.9 bits (89), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 196 NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
NL + L +LR F S G +V SA++I S GYGFV++ + K AE AI+
Sbjct: 31 NLIVNYLPQNMTQDELRSLFSSIG-EVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIN 89
Query: 256 AFQGKVIMCLVIALSY 271
G + I +SY
Sbjct: 90 TLNGLRLQSKTIKVSY 105
>gi|359495203|ref|XP_002263507.2| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein 3
[Vitis vinifera]
Length = 1093
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 72/144 (50%), Gaps = 10/144 (6%)
Query: 120 LFEQHGTVLDIELSMHSKNR-NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178
LF+Q VL I + R + G A+V SP +AT AL +L G+ +++ ++
Sbjct: 492 LFQQVAPVLSIRVCRDQARRASLGYAYVNFASPQDATNALEHLNFTPLNGKPIRIMFSHR 551
Query: 179 KKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAG 238
P ++ FA N+FI NL K L + F + G V+S ++ DN +S G
Sbjct: 552 D-----PSIRKSGFA--NVFIKNLDPSIDNKALLDTFAAFG-TVLSCKIAL-DNNGQSKG 602
Query: 239 YGFVSFKSKKVAETAISAFQGKVI 262
YGFV F+ ++ A+ AI G +I
Sbjct: 603 YGFVQFEQEEAAQNAIKRLNGMLI 626
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 82/177 (46%), Gaps = 22/177 (12%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N+ T+T +D++ +F ++G++ + + ++ FV S D A AA+ +
Sbjct: 652 TNVYVKNLSETTTDDDLKNIFGKYGSITSAVVMRDASGMSKCFGFVNFQSSDSAAAAVEH 711
Query: 161 LESYEF-EGRTLKVNYAKIK--------------KKNPFPPVQPKPFATFNLFIANLSFE 205
L F + + V A+ K +KN F + F NL++ NL
Sbjct: 712 LNGATFNDDKVWYVGKAQRKSEREAELRAKFEQERKNKF-----EKFKGTNLYLKNLDDS 766
Query: 206 ARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
+ L+E F SE + S +V+ D S G GFV+F + + A A++ GK+I
Sbjct: 767 VNDEKLKELF-SEFGTITSCKVML-DPQGLSKGSGFVAFLTPEEATRALNVMNGKMI 821
Score = 43.9 bits (102), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 64/151 (42%), Gaps = 16/151 (10%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGR--- 169
D +AL F GTVL ++++ + +++G FV + A A+ L +
Sbjct: 573 DNKALLDTFAAFGTVLSCKIALDNNGQSKGYGFVQFEQEEAAQNAIKRLNGMLINDKQVY 632
Query: 170 -TLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVI 228
L V + + + N P N+++ NLS DL+ F G +++ V+
Sbjct: 633 VGLFVRHQERNRGNGSPKFT-------NVYVKNLSETTTDDDLKNIFGKYG--SITSAVV 683
Query: 229 FHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
D S +GFV+F+S A A+ G
Sbjct: 684 MRDASGMSKCFGFVNFQSSDSAAAAVEHLNG 714
Score = 41.6 bits (96), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 45/86 (52%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEAT 155
E++ T L +N+ + E ++ LF + GT+ ++ + + ++G FV +P+EAT
Sbjct: 751 EKFKGTNLYLKNLDDSVNDEKLKELFSEFGTITSCKVMLDPQGLSKGSGFVAFLTPEEAT 810
Query: 156 AALNNLESYEFEGRTLKVNYAKIKKK 181
ALN + + L V A+ K++
Sbjct: 811 RALNVMNGKMIGRKPLYVAVAQRKEE 836
>gi|354485887|ref|XP_003505113.1| PREDICTED: polyadenylate-binding protein 4-like [Cricetulus
griseus]
Length = 685
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 82/167 (49%), Gaps = 14/167 (8%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
++++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 227 DNLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVG 286
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 287 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 345
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIALS 270
+V+ D RS G+GFV F S + A A++ G+++ L +AL+
Sbjct: 346 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 390
Score = 37.0 bits (84), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ ++ M R++G FV SP
Sbjct: 307 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-MLEDGRSKGFGFVCFSSP 365
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 366 EEATKAVTEMNGRIVGSKPLYVALAQRKEE 395
>gi|390465920|ref|XP_003733490.1| PREDICTED: ELAV-like protein 4 isoform 3 [Callithrix jacchus]
gi|403258119|ref|XP_003921626.1| PREDICTED: ELAV-like protein 4 isoform 2 [Saimiri boliviensis
boliviensis]
Length = 366
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 72/163 (44%), Gaps = 11/163 (6%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T E+ R+LF G + +L ++ G FV P +A A
Sbjct: 44 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 103
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + +T+KV+YA+ + NL+++ L K+L + F
Sbjct: 104 INTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQKELEQLFSQ 154
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 155 YGR-IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 196
>gi|348523085|ref|XP_003449054.1| PREDICTED: nucleolin-like isoform 4 [Oreochromis niloticus]
Length = 659
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 86/176 (48%), Gaps = 20/176 (11%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAAL 158
SKT LV N+ + +T E +++ FE+ + I + R +G AF+ S D+A AL
Sbjct: 420 SKT-LVVNNLSFNATEEVLQSTFEK---AVSIRIPQRD-GRPKGFAFLEFESTDDAKDAL 474
Query: 159 NNLESYEFEGRTLKVNYAKIK---KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFF 215
N + E EGR++++ Y++ + + N P T LF+ LS + + L++ F
Sbjct: 475 ENFNNTEIEGRSIRLEYSQSRDWNRGNSGP--------TKTLFVKGLSEDTTEETLKDAF 526
Query: 216 ISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271
EG V+A ++ + S G+GFV F ++ + A A + I + L Y
Sbjct: 527 --EG--AVAARIVTDRDTGSSKGFGFVDFSNEDDCKAAKEAMEDGEIDGSKVTLDY 578
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 84/180 (46%), Gaps = 14/180 (7%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
+ ++E+ ++T L +N+P+++T +D++ +F+ ++I + N+G+A+V +
Sbjct: 326 DSKKEKDART-LFVKNLPFSATADDLKEIFKD---AVEIRVPPGQNTSNKGIAYVEFKTE 381
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDL 211
+A + + E +GR++ ++Y K A+ L + NLSF A + L
Sbjct: 382 ADAERTMEETQGSEVQGRSIIIDYTGEKSHMGARA----SAASKTLVVNNLSFNATEEVL 437
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271
+ F VS + D R G+ F+ F+S A+ A+ F I I L Y
Sbjct: 438 QSTF----EKAVSIRIPQRDG--RPKGFAFLEFESTDDAKDALENFNNTEIEGRSIRLEY 491
>gi|115396600|ref|XP_001213939.1| predicted protein [Aspergillus terreus NIH2624]
gi|114193508|gb|EAU35208.1| predicted protein [Aspergillus terreus NIH2624]
Length = 282
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 62/121 (51%), Gaps = 4/121 (3%)
Query: 95 EEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEA 154
EE K + N+ + T ED+R E++G V + ++ ++ +RG +V + + A
Sbjct: 93 EEPTPKETVYVGNLFYDVTAEDLRKQMEKYGVVEQVFITFDNRGISRGFGYVQFDTIESA 152
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
A++ + FEGR + V YA + N P +P AT L+I NLSFE +DL E
Sbjct: 153 KRAISAMHMRVFEGRRVVVQYA---QNNVAPQRSMRP-ATRTLYIGNLSFETTDRDLNEL 208
Query: 215 F 215
F
Sbjct: 209 F 209
Score = 41.6 bits (96), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 188 QPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSK 247
+P P T +++ NL ++ A+DLR+ E + VV I DN S G+G+V F +
Sbjct: 94 EPTPKET--VYVGNLFYDVTAEDLRKQM--EKYGVVEQVFITFDNRGISRGFGYVQFDTI 149
Query: 248 KVAETAISAFQGKVIMCLVIALSY 271
+ A+ AISA +V + + Y
Sbjct: 150 ESAKRAISAMHMRVFEGRRVVVQY 173
>gi|71993203|ref|NP_001021709.1| Protein PAB-1, isoform a [Caenorhabditis elegans]
gi|3880681|emb|CAA21572.1| Protein PAB-1, isoform a [Caenorhabditis elegans]
Length = 646
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 81/159 (50%), Gaps = 14/159 (8%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E + LF + G + E+ M + +++G FV +P+EA A+ L EG LK++
Sbjct: 227 ETLEKLFAKFGNITSCEV-MTVEGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLH 285
Query: 175 ----------YAKIKKKNPFPPVQP-KPFATFNLFIANLSFEARAKDLREFFISEGWDVV 223
+A++KKK+ + + + NL++ NL L++ F S G ++
Sbjct: 286 VCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDETVDDDGLKKQFESYG-NIT 344
Query: 224 SAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
SA+V+ +N RS G+GFV F+ + A +A++ K++
Sbjct: 345 SAKVMTDENG-RSKGFGFVCFEKPEEATSAVTEMNSKMV 382
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 74/155 (47%), Gaps = 15/155 (9%)
Query: 114 HEDIRA--LFEQ---HGTVLDIELSMHSKNR-NRGLAFVTMGSPDEATAALNNLESYEFE 167
H D+ LFE+ G VL I + + R + G A+V P +A A++ +
Sbjct: 40 HPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDTMNFEALH 99
Query: 168 GRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEV 227
G+ +++ +++ ++P + N+FI NL K + + F G +++S +V
Sbjct: 100 GKPMRIMWSQ---RDPAM----RRSGAGNIFIKNLDKVIDNKSIYDTFSLFG-NILSCKV 151
Query: 228 IFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
D S GYGFV F++++ A+ AI G ++
Sbjct: 152 AI-DEDGFSKGYGFVHFETEEAAQNAIQKVNGMLL 185
Score = 41.2 bits (95), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 43/88 (48%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPD 152
+R ++Y L +N+ T + ++ FE +G + ++ R++G FV P+
Sbjct: 309 ERMQKYQGVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPE 368
Query: 153 EATAALNNLESYEFEGRTLKVNYAKIKK 180
EAT+A+ + S + L V A+ K+
Sbjct: 369 EATSAVTEMNSKMVCSKPLYVAIAQRKE 396
>gi|268575128|ref|XP_002642543.1| C. briggsae CBR-ASD-1 protein [Caenorhabditis briggsae]
Length = 418
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 51/89 (57%), Gaps = 5/89 (5%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNL 161
RL N+P+ D++ +FE++GTV+D+E+ + + ++G FVTM +P++A A N +
Sbjct: 98 RLHVSNIPFKYREPDLQTMFEKYGTVVDVEIIFNERG-SKGFGFVTMQNPEDADRARNEI 156
Query: 162 ESYEFEGRTLKVNYAK----IKKKNPFPP 186
EGR ++VN A KK P P
Sbjct: 157 HGSIIEGRRVEVNMATQRVHTKKAKPLMP 185
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
L ++N+ F+ R DL+ F G VV E+IF N R S G+GFV+ ++ + A+ A +
Sbjct: 99 LHVSNIPFKYREPDLQTMFEKYGT-VVDVEIIF--NERGSKGFGFVTMQNPEDADRARNE 155
Query: 257 FQGKVI 262
G +I
Sbjct: 156 IHGSII 161
>gi|402854029|ref|XP_003891683.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Papio anubis]
Length = 644
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 81/167 (48%), Gaps = 14/167 (8%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIALS 270
+V+ D RS G+GFV F S + A A++ G+++ L +AL+
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 73/156 (46%), Gaps = 9/156 (5%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G +L ++ + +N ++G AFV + + A A+ + R +
Sbjct: 111 DNKALYDTFSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVF 169
Query: 173 VNYAKIKKKNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD 231
V K +K+ + K F N++I N E + L+E F S+ +S +V+ D
Sbjct: 170 VGRFKSRKEREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVM-RD 225
Query: 232 NPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVI 267
+S G+GFVS++ + A A+ GK I +I
Sbjct: 226 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKII 261
>gi|402854027|ref|XP_003891682.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Papio anubis]
Length = 660
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 81/167 (48%), Gaps = 14/167 (8%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIALS 270
+V+ D RS G+GFV F S + A A++ G+++ L +AL+
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 73/156 (46%), Gaps = 9/156 (5%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G +L ++ + +N ++G AFV + + A A+ + R +
Sbjct: 111 DNKALYDTFSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVF 169
Query: 173 VNYAKIKKKNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD 231
V K +K+ + K F N++I N E + L+E F S+ +S +V+ D
Sbjct: 170 VGRFKSRKEREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVM-RD 225
Query: 232 NPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVI 267
+S G+GFVS++ + A A+ GK I +I
Sbjct: 226 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKII 261
>gi|71993217|ref|NP_001021711.1| Protein PAB-1, isoform c [Caenorhabditis elegans]
gi|38422743|emb|CAE54917.1| Protein PAB-1, isoform c [Caenorhabditis elegans]
Length = 586
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 81/159 (50%), Gaps = 14/159 (8%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E + LF + G + E+ M + +++G FV +P+EA A+ L EG LK++
Sbjct: 167 ETLEKLFAKFGNITSCEV-MTVEGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLH 225
Query: 175 ----------YAKIKKKNPFPPVQP-KPFATFNLFIANLSFEARAKDLREFFISEGWDVV 223
+A++KKK+ + + + NL++ NL L++ F S G ++
Sbjct: 226 VCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDETVDDDGLKKQFESYG-NIT 284
Query: 224 SAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
SA+V+ +N RS G+GFV F+ + A +A++ K++
Sbjct: 285 SAKVMTDENG-RSKGFGFVCFEKPEEATSAVTEMNSKMV 322
Score = 40.8 bits (94), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 43/88 (48%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPD 152
+R ++Y L +N+ T + ++ FE +G + ++ R++G FV P+
Sbjct: 249 ERMQKYQGVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPE 308
Query: 153 EATAALNNLESYEFEGRTLKVNYAKIKK 180
EAT+A+ + S + L V A+ K+
Sbjct: 309 EATSAVTEMNSKMVCSKPLYVAIAQRKE 336
>gi|58269652|ref|XP_571982.1| glycine-rich RNA binding protein [Cryptococcus neoformans var.
neoformans JEC21]
gi|57228218|gb|AAW44675.1| glycine-rich RNA binding protein, putative [Cryptococcus neoformans
var. neoformans JEC21]
Length = 182
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSPDEATAA 157
S +++ N+ W ST + + +F +GTV D I + R+RG FVT GSP EA AA
Sbjct: 2 SASKVYVGNLSWNSTDDTLLQVFSAYGTVTDCIVMKDRETGRSRGFGFVTYGSPQEAEAA 61
Query: 158 LNNLESYEFEGRTLKVNYAKIK 179
+ + E +GR ++VN A +
Sbjct: 62 IAAMNEQELDGRRVRVNMANSR 83
>gi|70983602|ref|XP_747328.1| nucleic acid-binding protein [Aspergillus fumigatus Af293]
gi|66844954|gb|EAL85290.1| nucleic acid-binding protein [Aspergillus fumigatus Af293]
gi|159123666|gb|EDP48785.1| nucleic acid-binding protein [Aspergillus fumigatus A1163]
Length = 324
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 70/165 (42%), Gaps = 7/165 (4%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEF 166
N+ + T ED++ +Q G V ++L ++ +RG A+V S + A + + + F
Sbjct: 150 NLFYDVTAEDLKNHMQQFGVVERVDLITDNRGLSRGFAYVHFDSIEAAKSCVEAMHLQIF 209
Query: 167 EGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAE 226
EGR + YA P P A+ L++ NLSFE +DL E F +V+
Sbjct: 210 EGRRITAQYASSGGTRPLRP------ASRTLYLGNLSFEMTDRDLNELFRDIN-NVIDVR 262
Query: 227 VIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271
V + G+ F + A+ A GK I + Y
Sbjct: 263 VSVDRRTGQPRGFAHAEFLDVESAQKAFEILSGKAPYGRRIRVDY 307
>gi|390465918|ref|XP_003733489.1| PREDICTED: ELAV-like protein 4 isoform 2 [Callithrix jacchus]
gi|403258117|ref|XP_003921625.1| PREDICTED: ELAV-like protein 4 isoform 1 [Saimiri boliviensis
boliviensis]
Length = 371
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 72/163 (44%), Gaps = 11/163 (6%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T E+ R+LF G + +L ++ G FV P +A A
Sbjct: 49 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 108
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + +T+KV+YA+ + NL+++ L K+L + F
Sbjct: 109 INTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQKELEQLFSQ 159
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 160 YG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 201
>gi|254281262|ref|NP_001156871.1| ELAV-like protein 4 isoform d [Mus musculus]
gi|73977013|ref|XP_860413.1| PREDICTED: ELAV-like protein 4 isoform 17 [Canis lupus familiaris]
gi|291398928|ref|XP_002715152.1| PREDICTED: ELAV-like 4-like isoform 3 [Oryctolagus cuniculus]
gi|354468152|ref|XP_003496531.1| PREDICTED: ELAV-like protein 4 isoform 1 [Cricetulus griseus]
gi|426215484|ref|XP_004002002.1| PREDICTED: ELAV-like protein 4 isoform 2 [Ovis aries]
Length = 371
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 72/163 (44%), Gaps = 11/163 (6%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T E+ R+LF G + +L ++ G FV P +A A
Sbjct: 49 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 108
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + +T+KV+YA+ + NL+++ L K+L + F
Sbjct: 109 INTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQKELEQLFSQ 159
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 160 YG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 201
>gi|367000405|ref|XP_003684938.1| hypothetical protein TPHA_0C03520 [Tetrapisispora phaffii CBS 4417]
gi|357523235|emb|CCE62504.1| hypothetical protein TPHA_0C03520 [Tetrapisispora phaffii CBS 4417]
Length = 442
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 86/190 (45%), Gaps = 8/190 (4%)
Query: 82 DSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNR 141
D S N E S L N+ + E ++ F+ G + ++++ ++ KN +
Sbjct: 60 DDSDVVPANAINGGRETSDKILYVGNLDKSINEETLKQYFQIGGPISNVKV-INDKNNSV 118
Query: 142 GLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIAN 201
AFV +A A NL E + LK+N+A ++ + FNLF+ +
Sbjct: 119 NYAFVEYLQHHDADVAFKNLNGKTIETKVLKINWAFQSQQTT------SDESLFNLFVGD 172
Query: 202 LSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKV 261
L+ + + L F SE V A V++ RS GYGF+SF +++ A+TA+ Q
Sbjct: 173 LNVDVDDETLGHAF-SEFPSFVQAHVMWDMQTGRSRGYGFISFSNQEDAQTAMDKMQSTE 231
Query: 262 IMCLVIALSY 271
+ I +++
Sbjct: 232 LNGRQIRINW 241
>gi|321260943|ref|XP_003195191.1| glycine-rich RNA binding protein [Cryptococcus gattii WM276]
gi|317461664|gb|ADV23404.1| Glycine-rich RNA binding protein, putative [Cryptococcus gattii
WM276]
Length = 177
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSPDEATAA 157
S +++ N+ W ST + + +F +GTV D I + R+RG FVT GSP EA AA
Sbjct: 2 SASKVYVGNLSWNSTDDTLLQVFSAYGTVTDCIVMKDRETGRSRGFGFVTYGSPQEAEAA 61
Query: 158 LNNLESYEFEGRTLKVNYAKIK 179
+ + E +GR ++VN A +
Sbjct: 62 IAAMNEQELDGRRVRVNMANSR 83
>gi|58269650|ref|XP_571981.1| glycine-rich RNA binding protein [Cryptococcus neoformans var.
neoformans JEC21]
gi|134113905|ref|XP_774200.1| hypothetical protein CNBG1820 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50256835|gb|EAL19553.1| hypothetical protein CNBG1820 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57228217|gb|AAW44674.1| glycine-rich RNA binding protein, putative [Cryptococcus neoformans
var. neoformans JEC21]
Length = 161
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSPDEATAA 157
S +++ N+ W ST + + +F +GTV D I + R+RG FVT GSP EA AA
Sbjct: 2 SASKVYVGNLSWNSTDDTLLQVFSAYGTVTDCIVMKDRETGRSRGFGFVTYGSPQEAEAA 61
Query: 158 LNNLESYEFEGRTLKVNYA 176
+ + E +GR ++VN A
Sbjct: 62 IAAMNEQELDGRRVRVNMA 80
>gi|115450405|ref|NP_001048803.1| Os03g0123200 [Oryza sativa Japonica Group]
gi|25446691|gb|AAN74838.1| Unknown protein [Oryza sativa Japonica Group]
gi|108705923|gb|ABF93718.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|113547274|dbj|BAF10717.1| Os03g0123200 [Oryza sativa Japonica Group]
gi|125584746|gb|EAZ25410.1| hypothetical protein OsJ_09226 [Oryza sativa Japonica Group]
gi|215694916|dbj|BAG90107.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 252
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 81/170 (47%), Gaps = 14/170 (8%)
Query: 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRN-RGLAFVTMGSPDEATA 156
Y ++VA +P+T+T +IR LFE+ G + ++LS + N RGLAFV+ S +
Sbjct: 70 YETGKVVASGLPYTTTEAEIRELFERFGPLRSLQLSRFPDSGNFRGLAFVSFESNEVVMK 129
Query: 157 ALNNLESYEFEGRTLKVNYAKI------KKKNPFPPVQPKPFATFNLFIANLSFEARAKD 210
+L L+ ++ R ++V ++ K+ F K + ++ NL ++ D
Sbjct: 130 SL-ELDGFKIGNRFMRVERCRLAAGSKRKRTVEFQTDPKKADGCLSAYVGNLKWDVTETD 188
Query: 211 LREFFISEGWDVVSAEVIFHDNPRRSAGYGF--VSFKSKKVAETAISAFQ 258
LR+FF S + + + F N R GF V F+ + E A+ Q
Sbjct: 189 LRDFFKS----LKISSIRFAINKRTGDSRGFCHVDFEDDESLEKAVGMNQ 234
>gi|194044632|ref|XP_001927442.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Sus scrofa]
Length = 610
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 84/184 (45%), Gaps = 17/184 (9%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDI-----RALFEQHGTVLDIELSMHSKNRNRGLAFVT 147
+RE E L N+ + H D+ + LF Q G +L +++ +RG FV
Sbjct: 178 EREAELGARALEFTNIYVKNLHVDVDERCLQDLFSQFGKILSVKVMRDDSGHSRGFGFVN 237
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYA--KIKKKNP----FPPVQPKPFATF---NLF 198
++A A+ ++ E GR L V A +++++N F ++ + NL+
Sbjct: 238 FEKHEDAQKAVTDMNGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLY 297
Query: 199 IANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ 258
+ NL + LR+ F G + SA+V+ S G+GFV F S + A A++
Sbjct: 298 VKNLDDSIDDEKLRKEFAPYGM-ITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMN 354
Query: 259 GKVI 262
G+++
Sbjct: 355 GRIV 358
>gi|345493619|ref|XP_003427110.1| PREDICTED: ELAV-like protein 3-like isoform 2 [Nasonia vitripennis]
Length = 383
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 85/212 (40%), Gaps = 26/212 (12%)
Query: 74 ATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELS 133
A D V + + N Q +E SKT L+ +P T T E+IR+LF G V +L
Sbjct: 3 ANGMDTVVQQNGGS--NLGQSSQEESKTNLIVNYLPQTMTQEEIRSLFSSIGEVESCKLI 60
Query: 134 MHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK-----IKKKNPFPPV 187
++ G FV P++A A+N L + +T+KV+YA+ IK N +
Sbjct: 61 RDKLTGQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSEAIKGANLYVSG 120
Query: 188 QPKPFAT---FNLF-----IANLSFEARAKDLREFFISEGWDV----------VSAEVIF 229
PK NLF I +R+F G ++ + +
Sbjct: 121 LPKNMTQQDLENLFSPYGRIITSRILCDNITVRQFVTGGGDNLPETRENSPATLGCVRLA 180
Query: 230 HDNPRRSAGYGFVSFKSKKVAETAISAFQGKV 261
D S G GF+ F + AE AI G +
Sbjct: 181 LDIAGLSKGVGFIRFDQRVEAERAIQELNGTI 212
>gi|305855162|ref|NP_001182263.1| ELAV-like protein 1 [Sus scrofa]
gi|285818484|gb|ADC38915.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 [Sus
scrofa]
gi|456753432|gb|JAA74168.1| ELAV-like 1 (Hu antigen R) [Sus scrofa]
Length = 326
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 76/169 (44%), Gaps = 11/169 (6%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGS 150
E ++ +T L+ +P T E++R+LF G + +L + G FV +
Sbjct: 11 EDCRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHSLGYGFVNYVT 70
Query: 151 PDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKD 210
+A A+N L + +T+KV+YA+ P V NL+I+ L KD
Sbjct: 71 AKDAERAINTLNGLRLQSKTIKVSYAR-----PSSEV----IKDANLYISGLPRTMTQKD 121
Query: 211 LREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ + F G ++++ V+ S G F+ F + AE AI++F G
Sbjct: 122 VEDMFSPFGR-IINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 196 NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
NL + L ++LR F S G ++ SA++I S GYGFV++ + K AE AI+
Sbjct: 21 NLIVNYLPQNMTQEELRSLFSSIG-EIESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIN 79
Query: 256 AFQGKVIMCLVIALSY 271
G + I +SY
Sbjct: 80 TLNGLRLQSKTIKVSY 95
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.132 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,127,171,123
Number of Sequences: 23463169
Number of extensions: 164998683
Number of successful extensions: 490789
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 3555
Number of HSP's successfully gapped in prelim test: 12860
Number of HSP's that attempted gapping in prelim test: 458532
Number of HSP's gapped (non-prelim): 36241
length of query: 274
length of database: 8,064,228,071
effective HSP length: 140
effective length of query: 134
effective length of database: 9,074,351,707
effective search space: 1215963128738
effective search space used: 1215963128738
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 76 (33.9 bits)