BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024018
(274 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P19684|ROC5_NICSY 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 324
Score = 87.8 bits (216), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 93/163 (57%), Gaps = 12/163 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNN 160
RL N+P++ T + +F + GTV ++E+ +R+RG AFVTMGS +EA A+
Sbjct: 115 RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRL 174
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF--------NLFIANLSFEARAKDLR 212
+ + GRT+KVN+ ++ + + K +T+ L++ANLS+ ++ LR
Sbjct: 175 FDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGLR 234
Query: 213 EFFISE-GWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAI 254
+ F + G+ +SA+VI+ + RS G+GF++F S + +A+
Sbjct: 235 DAFADQPGF--MSAKVIYDRSSGRSRGFGFITFSSAEAMNSAL 275
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALF-EQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
+L N+ W T + +R F +Q G + + S R+RG F+T S + +AL+
Sbjct: 218 KLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDT 277
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPV 187
+ E EGR L++N A K PPV
Sbjct: 278 MNEVELEGRPLRLNVAGQKAPVSSPPV 304
Score = 39.3 bits (90), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
L++ NL F + L E F +E V + E+++ RS G+ FV+ S + A+ AI
Sbjct: 116 LYVGNLPFSMTSSQLSEIF-AEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRL 174
Query: 257 FQGKVIMCLVIALSY 271
F G + + +++
Sbjct: 175 FDGSQVGGRTVKVNF 189
>sp|P19682|ROC3_NICSY 28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 276
Score = 85.1 bits (209), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 92/187 (49%), Gaps = 5/187 (2%)
Query: 86 AAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLA 144
A TE+ +E +L N+P+ E + LF+Q G V E+ + + +R+RG
Sbjct: 82 GEAGETEEYQEPSEDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFG 141
Query: 145 FVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA-TFNLFIANLS 203
FVTM + +EA A+ Y+ GR L VN K + P P+ F T+ +++ N+
Sbjct: 142 FVTMSTVEEADKAVELYSQYDLNGRLLTVN--KAAPRGSRPERAPRTFQPTYRIYVGNIP 199
Query: 204 FEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
++ L + F SE VVSA V+F RS G+GFV+ S+ AI+ G+ +
Sbjct: 200 WDIDDARLEQVF-SEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLD 258
Query: 264 CLVIALS 270
I ++
Sbjct: 259 GRTIRVN 265
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
R+ N+PW + +F +HG V+ + + R+RG FVTM S E + A+ N
Sbjct: 192 RIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIAN 251
Query: 161 LESYEFEGRTLKVNYAKIKKK 181
L+ +GRT++VN A+ + +
Sbjct: 252 LDGQTLDGRTIRVNAAEERPR 272
>sp|P19683|ROC4_NICSY 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 315
Score = 78.6 bits (192), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 87/164 (53%), Gaps = 7/164 (4%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKN--RNRGLAFVTMGSPDEATAALN 159
+L N+P+ E + LFEQ G V++I +++++ ++RG FVTM + +EA A+
Sbjct: 137 KLFVGNLPYDVDSEGLARLFEQAG-VVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVE 195
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA-TFNLFIANLSFEARAKDLREFFISE 218
Y+ GR L VN A + + P P P+ F ++ +++ N+ + L + F SE
Sbjct: 196 MYNRYDVNGRLLTVNKAARRGERPERP--PRTFEQSYRIYVGNIPWGIDDARLEQLF-SE 252
Query: 219 GWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
VVSA V++ RS G+GFV+ S+ AI+ G+ +
Sbjct: 253 HGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSL 296
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
R+ N+PW + LF +HG V+ + + R+RG FVTM S E + A+ N
Sbjct: 231 RIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIAN 290
Query: 161 LESYEFEGRTLKVNYAKIK-KKNPF 184
L+ +GRT++VN A+ + ++N F
Sbjct: 291 LDGQSLDGRTIRVNVAEDRSRRNTF 315
>sp|P82277|RRP2_SPIOL 30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea
GN=PSRP2 PE=1 SV=1
Length = 260
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 86/175 (49%), Gaps = 23/175 (13%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAALN 159
RL N+P ++++R + E+HG + +I M+ K R+R FVTM + ++A A +
Sbjct: 85 RLYVGNIPRNLNNDELRTIVEEHGAI-EIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIE 143
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFAT------------FNLFIANLSFEAR 207
L E GR +KVN + P++ AT + ++I NL+
Sbjct: 144 KLNDTEIGGRKIKVNITE-------KPLEGMDIATTQAEDSQFVESPYKVYIGNLAKTVT 196
Query: 208 AKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
+ L++FF SE V+ A+V +S G+GFVSF S++ E AI A V+
Sbjct: 197 NELLKDFF-SEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALNNSVL 250
Score = 37.0 bits (84), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNNLESYE 165
N+ T T+E ++ F + G VL ++ +++ G FV+ S +E AA+ L +
Sbjct: 190 NLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALNNSV 249
Query: 166 FEGRTLKVNYA 176
EG+ ++VN A
Sbjct: 250 LEGQKIRVNKA 260
>sp|Q04836|ROC3_ARATH 31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana
GN=RBP31 PE=1 SV=1
Length = 329
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 82/170 (48%), Gaps = 5/170 (2%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAAL 158
+ +L N+ + + + LFEQ GTV E+ + + +++RG FVTM S DEA A+
Sbjct: 149 EAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAV 208
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA-TFNLFIANLSFEARAKDLREFFIS 217
Y+ GR L VN K + P P+ + F +++ NL ++ L + F S
Sbjct: 209 EKFNRYDLNGRLLTVN--KAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLF-S 265
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVI 267
E VV A V++ RS G+GFV+ AISA G+ + I
Sbjct: 266 EHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAI 315
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
R+ N+PW + + LF +HG V++ + + R+RG FVTM DE A++
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304
Query: 161 LESYEFEGRTLKVNYAK 177
L+ EGR ++VN A+
Sbjct: 305 LDGQNLEGRAIRVNVAE 321
>sp|P28644|ROC1_SPIOL 28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1
SV=1
Length = 233
Score = 74.7 bits (182), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 85/167 (50%), Gaps = 9/167 (5%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAAL 158
+ +L N+P+ E + +F+ G V E+ + + +R+RG FVTM + +EA A+
Sbjct: 54 EAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAV 113
Query: 159 NNLESYEFEGRTLKVNYAKIK---KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFF 215
L Y+ +GR L VN A + ++ P +P + +++ NL ++ L + F
Sbjct: 114 ELLNGYDMDGRQLTVNKAAPRGSPERAPRGDFEP----SCRVYVGNLPWDVDTSRLEQLF 169
Query: 216 ISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
SE VVSA V+ RS G+GFV+ S+ AI+A G+ +
Sbjct: 170 -SEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTL 215
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIEL-SMHSKNRNRGLAFVTMGSPDEATAALNN 160
R+ N+PW + LF +HG V+ + S R+RG FVTM S E A+
Sbjct: 150 RVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAA 209
Query: 161 LESYEFEGRTLKVNYAKIKKKNPF 184
L+ +GR ++VN A+ + + F
Sbjct: 210 LDGQTLDGRAVRVNVAEERPRRAF 233
>sp|O04425|FCA_ARATH Flowering time control protein FCA OS=Arabidopsis thaliana GN=FCA
PE=1 SV=2
Length = 747
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 86/191 (45%), Gaps = 20/191 (10%)
Query: 79 PFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK- 137
P D S + R S +L +VP T+T E+IR FEQHG VL++ L +
Sbjct: 101 PISDHGSFTGTDVSDRS---STVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRT 157
Query: 138 NRNRGLAFV---TMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFAT 194
+ +G FV T D A AL+N + ++V YA +++ T
Sbjct: 158 GQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGERER---------IGT 208
Query: 195 --FNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAET 252
F LF+ +L+ +A K++ E F+ G V + D R+S G GFV + SK+ A
Sbjct: 209 LEFKLFVGSLNKQATEKEVEEIFLQFGH--VEDVYLMRDEYRQSRGCGFVKYSSKETAMA 266
Query: 253 AISAFQGKVIM 263
AI G M
Sbjct: 267 AIDGLNGTYTM 277
>sp|Q08935|ROC1_NICSY 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris
PE=2 SV=1
Length = 273
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 89/177 (50%), Gaps = 10/177 (5%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAALN 159
++ N+P+++ + LFE+ G V +E+ ++ K R+RG FVTM S +E AA
Sbjct: 88 KIFVGNLPFSADSAALAELFERAGNVEMVEV-IYDKLTGRSRGFGFVTMSSKEEVEAACQ 146
Query: 160 NLESYEFEGRTLKVNYA--KIKKKNPFPPVQPKPFATF----NLFIANLSFEARAKDLRE 213
YE +GR L+VN K++N + +F +++ NL++ +D E
Sbjct: 147 QFNGYELDGRALRVNSGPPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAW-GVDQDALE 205
Query: 214 FFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALS 270
SE VV A+V++ + RS G+GFV++ S + AI + G + I +S
Sbjct: 206 TLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVS 262
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAALN 159
R+ N+ W + + LF + G V+D ++ R+RG FVT S +E A+
Sbjct: 188 NRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIE 247
Query: 160 NLESYEFEGRTLKVNYAKIK 179
+L+ + GR ++V+ A+ +
Sbjct: 248 SLDGVDLNGRAIRVSPAEAR 267
>sp|Q9ZUU4|ROC1_ARATH Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana
GN=At2g37220 PE=1 SV=1
Length = 289
Score = 71.2 bits (173), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 88/204 (43%), Gaps = 35/204 (17%)
Query: 94 REEEYSKT-RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGS 150
+E+ +S +L N+P+ + LFE G V +E+ ++ K R+RG FVTM S
Sbjct: 83 KEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEV-IYDKITGRSRGFGFVTMSS 141
Query: 151 PDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF--------------- 195
E AA YE +GR L+VN P PP + F+
Sbjct: 142 VSEVEAAAQQFNGYELDGRPLRVNAG------PPPPKREDGFSRGPRSSFGSSGSGYGGG 195
Query: 196 ---------NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKS 246
+++ NLS+ L F +G VV A VI+ + RS G+GFV++ S
Sbjct: 196 GGSGAGSGNRVYVGNLSWGVDDMALESLFSEQG-KVVEARVIYDRDSGRSKGFGFVTYDS 254
Query: 247 KKVAETAISAFQGKVIMCLVIALS 270
+ + AI + G + I +S
Sbjct: 255 SQEVQNAIKSLDGADLDGRQIRVS 278
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAALN 159
R+ N+ W + +LF + G V++ + R++G FVT S E A+
Sbjct: 204 NRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIK 263
Query: 160 NLESYEFEGRTLKVNYAKIK 179
+L+ + +GR ++V+ A+ +
Sbjct: 264 SLDGADLDGRQIRVSEAEAR 283
>sp|P49313|ROC1_NICPL 30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
plumbaginifolia PE=2 SV=1
Length = 279
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 88/191 (46%), Gaps = 32/191 (16%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAALN 159
++ N+ +++ + LFE+ G V +E+ ++ K R+RG FVTM S +E AA
Sbjct: 88 KIFVGNLLFSADSAALAELFERAGNVEMVEV-IYDKLTGRSRGFGFVTMSSKEEVEAACQ 146
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF--------------------NLFI 199
YE +GR L+VN PP + + ++F +++
Sbjct: 147 QFNGYELDGRALRVNSG--------PPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYV 198
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
NL++ +D E SE VV A+V++ + RS G+GFV++ S + AI + G
Sbjct: 199 GNLAWGV-DQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDG 257
Query: 260 KVIMCLVIALS 270
+ I +S
Sbjct: 258 VDLNGRAIRVS 268
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAALN 159
R+ N+ W + + LF + G V+D ++ R+RG FVT S +E A+
Sbjct: 194 NRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIE 253
Query: 160 NLESYEFEGRTLKVNYAKIK 179
+L+ + GR ++V+ A+ +
Sbjct: 254 SLDGVDLNGRAIRVSPAEAR 273
>sp|P20397|NUCL_XENLA Nucleolin OS=Xenopus laevis GN=ncl PE=2 SV=3
Length = 651
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 87/180 (48%), Gaps = 11/180 (6%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
E ++E S+T L +N+P+++T E+++ +FE DI + N+G+A+V +
Sbjct: 317 ENKKERDSRT-LFVKNIPYSTTVEELQEIFE---NAKDIRIPTGKDGSNKGIAYVEFSNE 372
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDL 211
DEA AL + E EGR++ V++ K +N P+ + L + NLS+ A L
Sbjct: 373 DEANKALEEKQGAEIEGRSIFVDFTGEKSQNSGNKKGPEGDSKV-LVVNNLSYSATEDSL 431
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271
RE F + + N R+ G+ F+ F S + A+ A+ + I I L +
Sbjct: 432 REVFEK------ATSIRIPQNQGRAKGFAFIEFSSAEDAKDAMDSCNNTEIEGRSIRLEF 485
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 82/166 (49%), Gaps = 11/166 (6%)
Query: 80 FVDSSSAAAVNTEQREEEYSKTR-LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKN 138
FVD + + N+ ++ ++ LV N+ +++T + +R +FE+ T + I ++
Sbjct: 393 FVDFTGEKSQNSGNKKGPEGDSKVLVVNNLSYSATEDSLREVFEKA-TSIRI---PQNQG 448
Query: 139 RNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLF 198
R +G AF+ S ++A A+++ + E EGR++++ +++ T LF
Sbjct: 449 RAKGFAFIEFSSAEDAKDAMDSCNNTEIEGRSIRLEFSQGGGPQGGGRGGSAQSKT--LF 506
Query: 199 IANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSF 244
+ LS + + L+E F V+A ++ + S G+GFV F
Sbjct: 507 VRGLSEDTTEETLKEAFDGS----VNARIVTDRDTGASKGFGFVDF 548
>sp|P32588|PUB1_YEAST Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PUB1 PE=1 SV=4
Length = 453
Score = 68.6 bits (166), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 87/202 (43%), Gaps = 27/202 (13%)
Query: 78 DPFVDSSSAAAVNTEQREE-------------------EYSKTRLVAQNVPWTSTHEDIR 118
DP + S A N+EQ E+ E S L N+ T + ++
Sbjct: 33 DPSSEQSVAVEGNSEQAEDNQGENDPSVVPANAITGGRETSDRVLYVGNLDKAITEDILK 92
Query: 119 ALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178
F+ G + +I++ + N+N AFV +A AL L + E +K+N+A
Sbjct: 93 QYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWA-- 150
Query: 179 KKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAG 238
F Q TFNLF+ +L+ + LR F + +S V++ S G
Sbjct: 151 -----FQSQQSSSDDTFNLFVGDLNVNVDDETLRNAF-KDFPSYLSGHVMWDMQTGSSRG 204
Query: 239 YGFVSFKSKKVAETAISAFQGK 260
YGFVSF S+ A+ A+ + QG+
Sbjct: 205 YGFVSFTSQDDAQNAMDSMQGQ 226
Score = 35.8 bits (81), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 24/36 (66%)
Query: 141 RGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176
RG FV+ S D+A A+++++ + GR L++N+A
Sbjct: 203 RGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 238
Score = 33.5 bits (75), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEF 166
N+P +T D+ LF+ G +LD + H +G F+ + ++A + L ++ F
Sbjct: 347 NIPHFATEADLIPLFQNFGFILDFK---HYP--EKGCCFIKYDTHEQAAVCIVALANFPF 401
Query: 167 EGRTLKVNYAK 177
+GR L+ + K
Sbjct: 402 QGRNLRTGWGK 412
>sp|Q98SP8|EPABA_XENLA Embryonic polyadenylate-binding protein A OS=Xenopus laevis
GN=epabp-a PE=1 SV=2
Length = 629
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 92/194 (47%), Gaps = 19/194 (9%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHED-----IRALFEQHGTVLDIELSMHSKNRNRGLAFVT 147
+RE EY + NV + ED +R +F G L +++ M R+RG FV
Sbjct: 178 ERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVN 237
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYA--KIKK----KNPFPPVQPKPFATF---NLF 198
G+ +EA A++ + E GR + V A +I++ K F ++ + + NL+
Sbjct: 238 YGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLY 297
Query: 199 IANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ 258
+ NL LR+ F+ G + SA+V+ S G+GFV F S + A A++
Sbjct: 298 VKNLDDGIDDDRLRKEFLPYG-TITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMN 354
Query: 259 GKVIMC--LVIALS 270
G+++ L +AL+
Sbjct: 355 GRIVSTKPLYVALA 368
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 69/143 (48%), Gaps = 11/143 (7%)
Query: 121 FEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179
F G ++ I + + R+ A++ P +A AL+ + +GR +++ +++
Sbjct: 31 FSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDTMNFEVIKGRPIRIMWSQ-- 88
Query: 180 KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
++P + N+FI NL K L + F + G +++S +V+ ++ R GY
Sbjct: 89 -RDP----GLRKSGVGNVFIKNLDESIDNKALYDTFSAFG-NILSCKVVCDEHGSR--GY 140
Query: 240 GFVSFKSKKVAETAISAFQGKVI 262
GFV F++ + A AI G ++
Sbjct: 141 GFVHFETHEAANRAIQTMNGMLL 163
Score = 32.7 bits (73), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ + +R F +GT+ ++ M ++G FV SP
Sbjct: 285 QERINRYQGVNLYVKNLDDGIDDDRLRKEFLPYGTITSAKV-MTEGGHSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVSTKPLYVALAQRKEE 373
>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=Xenopus tropicalis
GN=epabp PE=2 SV=1
Length = 629
Score = 65.1 bits (157), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 91/194 (46%), Gaps = 19/194 (9%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHED-----IRALFEQHGTVLDIELSMHSKNRNRGLAFVT 147
+RE EY + NV + ED +R +F G L +++ M R+RG FV
Sbjct: 178 ERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVN 237
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYA--KIKK----KNPFPPVQPKPFATF---NLF 198
G+ +EA A++ + E GR + V A +I++ K F ++ + + NL+
Sbjct: 238 YGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLY 297
Query: 199 IANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ 258
+ NL LR+ F G + SA+V+ S G+GFV F S + A A++
Sbjct: 298 VKNLDDGIDDDRLRKEFSPYG-TITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMN 354
Query: 259 GKVIMC--LVIALS 270
G+++ L +AL+
Sbjct: 355 GRIVSTKPLYVALA 368
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 71/143 (49%), Gaps = 11/143 (7%)
Query: 121 FEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179
F G ++ I + + R+ G A++ P +A AL+ + +GR +++ +++
Sbjct: 31 FSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTMNFEVIKGRPIRIMWSQ-- 88
Query: 180 KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
++P + N+FI NL K L + F + G +++S +V+ ++ R GY
Sbjct: 89 -RDP----GLRKSGVGNVFIKNLDESIDNKALYDTFSAFG-NILSCKVVCDEHGSR--GY 140
Query: 240 GFVSFKSKKVAETAISAFQGKVI 262
GFV F++++ A AI G ++
Sbjct: 141 GFVHFETQEAANRAIQTMNGMLL 163
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ + +R F +GT+ ++ M ++G FV SP
Sbjct: 285 QERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKV-MTEGGHSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVSTKPLYVALAQRKEE 373
>sp|Q9P3U1|YKX5_SCHPO Uncharacterized RNA-binding protein C328.05 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC328.05 PE=4 SV=3
Length = 464
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 89/215 (41%), Gaps = 51/215 (23%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNL 161
+L N+P+ +D++ LF Q G+V+ ++ M+ + R+RG+ V M S EA A+ L
Sbjct: 180 QLFVGNLPYNVRWQDLKDLFRQAGSVIRADIQMNQEGRSRGIGIVVMSSMKEAMHAIQML 239
Query: 162 ESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFN------------------------- 196
+ +F GRTL+V + F + KP++T
Sbjct: 240 HNTDFMGRTLEVRLDR------FAHHKSKPYSTHGNGYTFPAEMQMTTSSTYLPMLGANT 293
Query: 197 ------------------LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAG 238
+++ NL + ++L + F G V+ A + + RS G
Sbjct: 294 QVEDLVYHAYPHGPCSDCIYVGNLPWATSDRNLLDLFTDIG-SVIRARIAYEPT-GRSKG 351
Query: 239 YGFVSFKSKKVAETAISAFQGKVIMCLVIALSYLY 273
+G V F+++ A ++I G + LSY +
Sbjct: 352 FGVVQFENENDAASSIEKLNGYRYGGRPLQLSYAH 386
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEF 166
N+PW ++ ++ LF G+V+ ++ R++G V + ++A +++ L Y +
Sbjct: 316 NLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLNGYRY 375
Query: 167 EGRTLKVNYAKIKKKNPFPPV 187
GR L+++YA P P V
Sbjct: 376 GGRPLQLSYAHY--ATPLPAV 394
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 73/171 (42%), Gaps = 12/171 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNL 161
R+ N+ + +++ Q G VL+ E+ ++G A + + +EA A+ L
Sbjct: 78 RVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEARTAIKTL 137
Query: 162 ESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFN---------LFIANLSFEARAKDLR 212
+ +F GR + + + ++ F P A+ N LF+ NL + R +DL+
Sbjct: 138 SNQKFMGRLVYIREDR-EQNARFGSSSVSPSASSNGKDSEPDRQLFVGNLPYNVRWQDLK 196
Query: 213 EFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263
+ F G V+ A++ + RS G G V S K A AI M
Sbjct: 197 DLFRQAG-SVIRADIQMNQE-GRSRGIGIVVMSSMKEAMHAIQMLHNTDFM 245
>sp|P48809|RB27C_DROME Heterogeneous nuclear ribonucleoprotein 27C OS=Drosophila
melanogaster GN=Hrb27C PE=1 SV=2
Length = 421
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 71/157 (45%), Gaps = 8/157 (5%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSPDEA 154
EE + +L + W +T E++ F + G ++D + + + R+RG FVT P
Sbjct: 2 EEDERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNV 61
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
L N + +GRT+ K NP +PK + +F+ L DLR F
Sbjct: 62 NHVLQN-GPHTLDGRTIDP-----KPCNPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTF 115
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAE 251
F G V +++ ++S G+GF+SF+ + E
Sbjct: 116 FNRYG-KVTEVVIMYDQEKKKSRGFGFLSFEEESSVE 151
>sp|Q91903|ELAV2_XENLA ELAV-like protein 2 OS=Xenopus laevis GN=elavl2 PE=1 SV=2
Length = 389
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 77/171 (45%), Gaps = 12/171 (7%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH--SKNRNRGLAFVTMG 149
E E SKT L+ +P T E++++LF G + +L ++ ++ G FV
Sbjct: 57 ESNNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYI 116
Query: 150 SPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAK 209
P +A A+N L + +T+KV+YA+ + NL+++ L K
Sbjct: 117 DPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQK 167
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
+L + F G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 168 ELEQLFSQYG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 217
Score = 35.0 bits (79), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 120 LFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178
+F G V ++++ + N+ +G FVTM + DEA A+ +L Y R L+V++
Sbjct: 325 MFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTS 384
Query: 179 K 179
K
Sbjct: 385 K 385
Score = 31.6 bits (70), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 196 NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD-NPRRSAGYGFVSFKSKKVAETAI 254
NL + L ++L+ F S G ++ S +++ +S GYGFV++ K AE AI
Sbjct: 67 NLIVNYLPQNMTQEELKSLFGSIG-EIESCKLVRDKITEGQSLGYGFVNYIDPKDAEKAI 125
Query: 255 SAFQGKVIMCLVIALSY 271
+ G + I +SY
Sbjct: 126 NTLNGLRLQTKTIKVSY 142
>sp|Q91584|ELAV3_XENLA ELAV-like protein 3 OS=Xenopus laevis GN=elavl3 PE=2 SV=1
Length = 348
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 80/175 (45%), Gaps = 11/175 (6%)
Query: 87 AAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAF 145
+N E + SKT L+ +P T E+ ++LF G + +L ++ G F
Sbjct: 20 GILNGTNGEADDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGF 79
Query: 146 VTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFE 205
V P++A A+N L + + +T+KV+YA+ + NL++++L
Sbjct: 80 VNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSSAS---------IRDANLYVSSLPKT 130
Query: 206 ARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
K++ + F S+ ++++ ++ S G GF+ F + AE AI G+
Sbjct: 131 MNQKEMEQLF-SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 184
Score = 36.6 bits (83), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 120 LFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178
LF G V ++++ + N+ +G FVTM + DEA A+ +L Y R L+V++
Sbjct: 284 LFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTS 343
Query: 179 KK 180
K+
Sbjct: 344 KQ 345
>sp|Q28GD4|ELAV2_XENTR ELAV-like protein 2 OS=Xenopus tropicalis GN=elavl2 PE=2 SV=2
Length = 375
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 75/170 (44%), Gaps = 11/170 (6%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGS 150
E E SKT L+ +P T E++++LF G + +L ++ G FV
Sbjct: 58 ESSNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYID 117
Query: 151 PDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKD 210
P +A A+N L + +T+KV+YA+ + NL+++ L K+
Sbjct: 118 PKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQKE 168
Query: 211 LREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
L + F G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 169 LEQLFSQYG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 217
Score = 35.4 bits (80), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 196 NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
NL + L ++L+ F S G ++ S +++ +S GYGFV++ K AE AI+
Sbjct: 68 NLIVNYLPQNMTQEELKSLFGSIG-EIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 126
Query: 256 AFQGKVIMCLVIALSY 271
G + I +SY
Sbjct: 127 TLNGLRLQTKTIKVSY 142
Score = 35.4 bits (80), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 120 LFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178
+F G V ++++ + N+ +G FVTM + DEA A+ +L Y R L+V++
Sbjct: 311 MFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTS 370
Query: 179 K 179
K
Sbjct: 371 K 371
>sp|Q6BI95|PABP_DEBHA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=PAB1 PE=3 SV=2
Length = 627
Score = 62.0 bits (149), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 87/181 (48%), Gaps = 13/181 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + A+N+ + E+ + LFE +G + I L + +++G FV + + A A++
Sbjct: 232 TNVYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKDHEGKSKGFGFVNFENHESAVKAVDE 291
Query: 161 LESYEFEGRTLKVNYAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDL 211
L E G+ + V A+ K+ K + + + + + NLFI NL ++ L
Sbjct: 292 LNDKEINGQKIYVGRAQKKRERLEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEKL 351
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIAL 269
E F G + SA V+ D +S G+GFV F S + A AI+ ++I L +AL
Sbjct: 352 EEEFKPFG-SITSARVMV-DETGKSKGFGFVCFSSPEEATKAITEMNQRMIYGKPLYVAL 409
Query: 270 S 270
+
Sbjct: 410 A 410
Score = 36.2 bits (82), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 38/83 (45%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATA 156
+Y L +N+ T E + F+ G++ + + +++G FV SP+EAT
Sbjct: 331 KYQGVNLFIKNLDDTIDSEKLEEEFKPFGSITSARVMVDETGKSKGFGFVCFSSPEEATK 390
Query: 157 ALNNLESYEFEGRTLKVNYAKIK 179
A+ + G+ L V A+ K
Sbjct: 391 AITEMNQRMIYGKPLYVALAQRK 413
>sp|Q60899|ELAV2_MOUSE ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2 SV=1
Length = 360
Score = 62.0 bits (149), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 84/181 (46%), Gaps = 13/181 (7%)
Query: 81 VDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNR 139
V+++ ++ V++ E+ SKT L+ +P T E++++LF G + +L +
Sbjct: 21 VNNNCSSPVDSGNTED--SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQ 78
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI 199
+ G FV P +A A+N L + +T+KV+YA+ + NL++
Sbjct: 79 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYV 129
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ L K+L + F G ++++ ++ S G GF+ F + AE AI G
Sbjct: 130 SGLPKTMTQKELEQLFSQYGR-IITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Query: 260 K 260
+
Sbjct: 189 Q 189
Score = 35.8 bits (81), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 196 NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
NL + L ++L+ F S G ++ S +++ +S GYGFV++ K AE AI+
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIG-EIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 256 AFQGKVIMCLVIALSY 271
G + I +SY
Sbjct: 99 TLNGLRLQTKTIKVSY 114
Score = 34.7 bits (78), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 120 LFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175
+F G V ++++ + N+ +G FVTM + DEA A+ +L Y R L+V++
Sbjct: 296 MFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 352
>sp|Q60900|ELAV3_MOUSE ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1 SV=1
Length = 367
Score = 62.0 bits (149), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 78/166 (46%), Gaps = 17/166 (10%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR----NRGLAFVTMGSPDEA 154
SKT L+ +P T ++ ++LF G++ DIE +++ + G FV P++A
Sbjct: 37 SKTNLIVNYLPQNMTQDEFKSLF---GSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDA 93
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
A+N L + + +T+KV+YA+ + NL+++ L K++ +
Sbjct: 94 DKAINTLNGLKLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMSQKEMEQL 144
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
F G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 145 FSQYG-RIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 35.8 bits (81), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 120 LFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178
LF G V ++++ + N+ +G FVTM + DEA A+ +L Y R L+V++
Sbjct: 303 LFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFKTS 362
Query: 179 KK 180
K+
Sbjct: 363 KQ 364
Score = 32.3 bits (72), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 196 NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
NL + L + + F S G D+ S +++ +S GYGFV++ A+ AI+
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIG-DIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN 98
Query: 256 AFQGKVIMCLVIALSY 271
G + I +SY
Sbjct: 99 TLNGLKLQTKTIKVSY 114
>sp|Q6GR16|EPABB_XENLA Embryonic polyadenylate-binding protein B OS=Xenopus laevis
GN=epabp-b PE=2 SV=1
Length = 629
Score = 61.6 bits (148), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 90/194 (46%), Gaps = 19/194 (9%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHED-----IRALFEQHGTVLDIELSMHSKNRNRGLAFVT 147
+RE EY + NV + ED ++ +F G L +++ M + R+RG FV
Sbjct: 178 ERELEYGAKVMEFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVN 237
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYA--KIKK----KNPFPPVQPKPFATF---NLF 198
G+ +EA A+ + E GR + V A +I++ K F ++ + + NL+
Sbjct: 238 YGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLY 297
Query: 199 IANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ 258
+ NL LR+ F G + S +V+ S G+GFV F S + A A++
Sbjct: 298 VKNLDDGIDDDRLRKEFSPYG-TITSTKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMN 354
Query: 259 GKVIMC--LVIALS 270
G+++ L +AL+
Sbjct: 355 GRIVSTKPLYVALA 368
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 70/143 (48%), Gaps = 11/143 (7%)
Query: 121 FEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179
F G ++ I + + R+ G A++ P +A AL+ + +GR +++ +++
Sbjct: 31 FSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTMNFEVIKGRPIRIMWSQ-- 88
Query: 180 KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
++P + N+FI NL K L + F + G D++S +V+ + R GY
Sbjct: 89 -RDP----GLRKSGVGNVFIKNLDDSIDNKALYDTFSAFG-DILSCKVVCDEYGSR--GY 140
Query: 240 GFVSFKSKKVAETAISAFQGKVI 262
GFV F++++ A AI G ++
Sbjct: 141 GFVHFETQEAANRAIQTMNGMLL 163
Score = 34.3 bits (77), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ + +R F +GT+ ++ M ++G FV SP
Sbjct: 285 QERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSTKV-MTEGGHSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVSTKPLYVALAQRKEE 373
>sp|Q5R9Z6|ELAV2_PONAB ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2 SV=1
Length = 359
Score = 61.6 bits (148), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 84/181 (46%), Gaps = 13/181 (7%)
Query: 81 VDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNR 139
++++ ++ V++ E+ SKT L+ +P T E++++LF G + +L +
Sbjct: 21 INNNCSSPVDSGNTED--SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQ 78
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI 199
+ G FV P +A A+N L + +T+KV+YA+ + NL++
Sbjct: 79 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYV 129
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ L K+L + F G ++++ ++ S G GF+ F + AE AI G
Sbjct: 130 SGLPKTMTQKELEQLFSQYGR-IITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Query: 260 K 260
+
Sbjct: 189 Q 189
Score = 35.4 bits (80), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 196 NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
NL + L ++L+ F S G ++ S +++ +S GYGFV++ K AE AI+
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIG-EIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 256 AFQGKVIMCLVIALSY 271
G + I +SY
Sbjct: 99 TLNGLRLQTKTIKVSY 114
Score = 34.7 bits (78), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 120 LFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175
+F G V ++++ + N+ +G FVTM + DEA A+ +L Y R L+V++
Sbjct: 295 MFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 351
>sp|Q12926|ELAV2_HUMAN ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1 SV=2
Length = 359
Score = 61.6 bits (148), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 84/181 (46%), Gaps = 13/181 (7%)
Query: 81 VDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNR 139
++++ ++ V++ E+ SKT L+ +P T E++++LF G + +L +
Sbjct: 21 INNNCSSPVDSGNTED--SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQ 78
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI 199
+ G FV P +A A+N L + +T+KV+YA+ + NL++
Sbjct: 79 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYV 129
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ L K+L + F G ++++ ++ S G GF+ F + AE AI G
Sbjct: 130 SGLPKTMTQKELEQLFSQYGR-IITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Query: 260 K 260
+
Sbjct: 189 Q 189
Score = 35.4 bits (80), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 196 NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
NL + L ++L+ F S G ++ S +++ +S GYGFV++ K AE AI+
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIG-EIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 256 AFQGKVIMCLVIALSY 271
G + I +SY
Sbjct: 99 TLNGLRLQTKTIKVSY 114
Score = 34.7 bits (78), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 120 LFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175
+F G V ++++ + N+ +G FVTM + DEA A+ +L Y R L+V++
Sbjct: 295 MFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 351
>sp|Q28FX0|ELAV3_XENTR ELAV-like protein 3 OS=Xenopus tropicalis GN=elavl3 PE=2 SV=1
Length = 343
Score = 61.6 bits (148), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 77/178 (43%), Gaps = 10/178 (5%)
Query: 84 SSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRG 142
S +N + SKT L+ +P T E+ ++LF G + +L ++ G
Sbjct: 18 GSVGILNGTNGAADDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLG 77
Query: 143 LAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANL 202
FV P++A A+N L + + +T+KV+YA+ + NL++++L
Sbjct: 78 YGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSSAS---------IRDANLYVSSL 128
Query: 203 SFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
K++ + F G + S ++ S G GF+ F + AE AI G+
Sbjct: 129 PKTMNQKEMEQLFSQYGRIITSRILVDQVTGSVSRGVGFIRFDKRIEAEEAIKGLNGQ 186
Score = 36.6 bits (83), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 120 LFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178
LF G V ++++ + N+ +G FVTM + DEA A+ +L Y R L+V++
Sbjct: 279 LFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTS 338
Query: 179 KK 180
K+
Sbjct: 339 KQ 340
>sp|P26378|ELAV4_HUMAN ELAV-like protein 4 OS=Homo sapiens GN=ELAVL4 PE=1 SV=2
Length = 380
Score = 61.2 bits (147), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 73/163 (44%), Gaps = 11/163 (6%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T E+ R+LF G + +L ++ G FV P +A A
Sbjct: 44 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 103
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + +T+KV+YA+ + NL+++ L K+L + F S
Sbjct: 104 INTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQKELEQLF-S 153
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
+ ++++ ++ S G GF+ F + AE AI G+
Sbjct: 154 QYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 196
Score = 35.4 bits (80), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 16/91 (17%)
Query: 101 TRLVAQNVP------WT---------STHEDIRALFEQHGTVLDIELSMH-SKNRNRGLA 144
T LV N+P W S + LF G V ++++ + N+ +G
Sbjct: 282 TSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFG 341
Query: 145 FVTMGSPDEATAALNNLESYEFEGRTLKVNY 175
FVTM + DEA A+ +L Y R L+V++
Sbjct: 342 FVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 372
Score = 35.4 bits (80), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 196 NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
NL + L ++ R F S G ++ S +++ +S GYGFV++ K AE AI+
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIG-EIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 105
Query: 256 AFQGKVIMCLVIALSY 271
G + I +SY
Sbjct: 106 TLNGLRLQTKTIKVSY 121
>sp|Q8CH84|ELAV2_RAT ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2 PE=2 SV=1
Length = 359
Score = 61.2 bits (147), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 84/181 (46%), Gaps = 13/181 (7%)
Query: 81 VDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNR 139
V+++ ++ V++ E+ SKT L+ +P T E++++LF G + +L +
Sbjct: 21 VNNNCSSPVDSGNTED--SKTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQ 78
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI 199
+ G FV P +A A+N L + +T+KV+YA+ + NL++
Sbjct: 79 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYV 129
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ L K+L + F G ++++ ++ S G GF+ F + AE AI G
Sbjct: 130 SGLPKTMTQKELEQLFSQYGR-IITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Query: 260 K 260
+
Sbjct: 189 Q 189
Score = 34.7 bits (78), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 120 LFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175
+F G V ++++ + N+ +G FVTM + DEA A+ +L Y R L+V++
Sbjct: 295 MFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 351
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 209 KDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIA 268
++L+ F S G ++ S +++ +S GYGFV++ K AE AI+ G + I
Sbjct: 53 EELKSLFGSIG-EIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIK 111
Query: 269 LSY 271
+SY
Sbjct: 112 VSY 114
>sp|O09032|ELAV4_RAT ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4 PE=1 SV=1
Length = 373
Score = 61.2 bits (147), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 72/163 (44%), Gaps = 11/163 (6%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T E+ R+LF G + +L ++ G FV P +A A
Sbjct: 37 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 96
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + +T+KV+YA+ + NL+++ L K+L + F
Sbjct: 97 INTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQKELEQLFSQ 147
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 148 YGR-IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 35.4 bits (80), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 196 NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
NL + L ++ R F S G ++ S +++ +S GYGFV++ K AE AI+
Sbjct: 40 NLIVNYLPQNMTQEEFRSLFGSIG-EIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 256 AFQGKVIMCLVIALSY 271
G + I +SY
Sbjct: 99 TLNGLRLQTKTIKVSY 114
Score = 35.4 bits (80), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 16/91 (17%)
Query: 101 TRLVAQNVP------WT---------STHEDIRALFEQHGTVLDIELSMH-SKNRNRGLA 144
T LV N+P W S + LF G V ++++ + N+ +G
Sbjct: 275 TSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFG 334
Query: 145 FVTMGSPDEATAALNNLESYEFEGRTLKVNY 175
FVTM + DEA A+ +L Y R L+V++
Sbjct: 335 FVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 365
>sp|Q61701|ELAV4_MOUSE ELAV-like protein 4 OS=Mus musculus GN=Elavl4 PE=1 SV=1
Length = 385
Score = 61.2 bits (147), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 72/163 (44%), Gaps = 11/163 (6%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T E+ R+LF G + +L ++ G FV P +A A
Sbjct: 49 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 108
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + +T+KV+YA+ + NL+++ L K+L + F
Sbjct: 109 INTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQKELEQLFSQ 159
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 160 YG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 201
Score = 35.4 bits (80), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 196 NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
NL + L ++ R F S G ++ S +++ +S GYGFV++ K AE AI+
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIG-EIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 110
Query: 256 AFQGKVIMCLVIALSY 271
G + I +SY
Sbjct: 111 TLNGLRLQTKTIKVSY 126
Score = 35.4 bits (80), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 16/91 (17%)
Query: 101 TRLVAQNVP------WT---------STHEDIRALFEQHGTVLDIELSMH-SKNRNRGLA 144
T LV N+P W S + LF G V ++++ + N+ +G
Sbjct: 287 TSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFG 346
Query: 145 FVTMGSPDEATAALNNLESYEFEGRTLKVNY 175
FVTM + DEA A+ +L Y R L+V++
Sbjct: 347 FVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 377
>sp|Q14576|ELAV3_HUMAN ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1 SV=3
Length = 367
Score = 60.8 bits (146), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 78/166 (46%), Gaps = 17/166 (10%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR----NRGLAFVTMGSPDEA 154
SKT L+ +P T ++ ++LF G++ DIE +++ + G FV P++A
Sbjct: 37 SKTNLIVNYLPQNMTQDEFKSLF---GSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDA 93
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
A+N L + + +T+KV+YA+ + NL+++ L K++ +
Sbjct: 94 DKAINTLNGLKLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMSQKEMEQL 144
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
F G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 145 FSQYG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 35.8 bits (81), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 120 LFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178
LF G V ++++ + N+ +G FVTM + DEA A+ +L Y R L+V++
Sbjct: 303 LFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFKTS 362
Query: 179 KK 180
K+
Sbjct: 363 KQ 364
Score = 32.3 bits (72), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 196 NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
NL + L + + F S G D+ S +++ +S GYGFV++ A+ AI+
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIG-DIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN 98
Query: 256 AFQGKVIMCLVIALSY 271
G + I +SY
Sbjct: 99 TLNGLKLQTKTIKVSY 114
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 85/181 (46%), Gaps = 14/181 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N E ++ LF Q G L +++ +++G FV+ ++A A+
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEE 250
Query: 161 LESYEFEGRTLKVNYAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDL 211
+ E G+ + V A+ K K F ++ + + + NL+I NL + L
Sbjct: 251 MNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 310
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIAL 269
R+ F G + SA+V+ D RS G+GFV F S + A A++ G+++ L +AL
Sbjct: 311 RKEFSPFG-SITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVAL 367
Query: 270 S 270
+
Sbjct: 368 A 368
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 73/156 (46%), Gaps = 9/156 (5%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G +L ++ + +N ++G AFV + + A A+ + R +
Sbjct: 111 DNKALYDTFSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVF 169
Query: 173 VNYAKIKKKNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD 231
V K +K+ + K F N++I N E + L+E F S+ +S +V+ D
Sbjct: 170 VGRFKSRKEREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVM-RD 225
Query: 232 NPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVI 267
+S G+GFVS++ + A A+ GK I +I
Sbjct: 226 PNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKII 261
Score = 37.0 bits (84), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ ++ M R++G FV SP
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-MLEDGRSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>sp|P13383|NUCL_RAT Nucleolin OS=Rattus norvegicus GN=Ncl PE=1 SV=3
Length = 713
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 90/173 (52%), Gaps = 13/173 (7%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAAL 158
SKT LV N+ +++T E ++ +FE+ T + + + H K++ G AF+ S ++A AL
Sbjct: 488 SKT-LVLSNLSYSATEETLQEVFEKA-TFIKVPQNPHGKSK--GYAFIEFASFEDAKEAL 543
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISE 218
N+ E EGRT+++ +++ P + +P T LF+ LS + + L+E F E
Sbjct: 544 NSCNKMEIEGRTIRL---ELQGPRGSPNARSQPSKT--LFVKGLSEDTTEETLKESF--E 596
Query: 219 GWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271
G V A ++ S G+GFV F S++ A+ A A + I + L +
Sbjct: 597 GS--VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 647
Score = 40.0 bits (92), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 84/171 (49%), Gaps = 15/171 (8%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKN-RNRGLAFVTMGSPDEATAALNNL 161
L+A+N+ + T ++++ +FE +E+ + S++ R++G+A++ S +A L
Sbjct: 399 LLAKNLSFNITEDELKEVFEDA-----VEIRLVSQDGRSKGIAYIEFKSEADAEKNLEEK 453
Query: 162 ESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA--TFNLFIANLSFEARAKDLREFFISEG 219
+ E +GR++ + Y K + + ++ + L ++NLS+ A + L+E F
Sbjct: 454 QGAEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKAT 513
Query: 220 WDVVSAEVIFHDNPR-RSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIAL 269
+ + NP +S GY F+ F S + A+ A+++ I I L
Sbjct: 514 F------IKVPQNPHGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRL 558
Score = 38.1 bits (87), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 55/132 (41%), Gaps = 14/132 (10%)
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI 199
NR +V S ++ AL E G LKV +IK + P K A L
Sbjct: 350 NRKFGYVDFESAEDLEKAL------ELTG--LKVFGNEIKLEKPKGRDSKKVRAARTLLA 401
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
NLSF +L+E F D V ++ D RS G ++ FKS+ AE + QG
Sbjct: 402 KNLSFNITEDELKEVF----EDAVEIRLVSQDG--RSKGIAYIEFKSEADAEKNLEEKQG 455
Query: 260 KVIMCLVIALSY 271
I ++L Y
Sbjct: 456 AEIDGRSVSLYY 467
>sp|Q0U1G2|PABP_PHANO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 /
FGSC 10173) GN=PAB1 PE=3 SV=3
Length = 744
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 69/139 (49%), Gaps = 10/139 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N+ T ED R LFE+HG + ++ + ++RG FV + A A+++
Sbjct: 229 TNIYVKNIDLDVTDEDFRELFEKHGDITSASIARDDQGKSRGFGFVNYIRHEAAAVAVDH 288
Query: 161 LESYEFEGRTLKVNYAK--------IKKKNPFPPVQPK-PFATFNLFIANLSFEARAKDL 211
L EF+G+ L V A+ ++K+ ++ + + NL+I NL+ + + L
Sbjct: 289 LNDIEFKGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKL 348
Query: 212 REFFISEGWDVVSAEVIFH 230
R+ F G + SA+VI
Sbjct: 349 RDMFTPFGT-ITSAKVILR 366
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 64/143 (44%), Gaps = 6/143 (4%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G +L +++ ++G FV + + A A+ ++ + +
Sbjct: 148 DNKALHDTFAAFGNILSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVF 207
Query: 173 VNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDN 232
V + I KK + N+++ N+ + +D RE F G D+ SA I D+
Sbjct: 208 VGH-HIPKKERMSKFEEMKANFTNIYVKNIDLDVTDEDFRELFEKHG-DITSAS-IARDD 264
Query: 233 PRRSAGYGFVSFKSKKVAETAIS 255
+S G+GFV++ + A A+
Sbjct: 265 QGKSRGFGFVNYIRHEAAAVAVD 287
Score = 40.0 bits (92), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 10/144 (6%)
Query: 120 LFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178
LF G V I + + R+ G A+V S ++ AL L +G+ ++ +++
Sbjct: 67 LFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEELNYTVIKGKPCRIMWSQ- 125
Query: 179 KKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAG 238
++P + N+FI NL K L + F + G +++S +V D S G
Sbjct: 126 --RDP----ALRKTGQGNVFIKNLDHAIDNKALHDTFAAFG-NILSCKVA-QDELGNSKG 177
Query: 239 YGFVSFKSKKVAETAISAFQGKVI 262
YGFV +++ + A AI G ++
Sbjct: 178 YGFVHYETAEAANNAIKHVNGMLL 201
Score = 31.2 bits (69), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 138 NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179
+++G FV +PDEAT A+ + EG+ L V A+ K
Sbjct: 422 GKSKGFGFVCFSNPDEATKAVTEMNQKMIEGKPLYVALAQRK 463
>sp|P08199|NUCL_MESAU Nucleolin OS=Mesocricetus auratus GN=NCL PE=1 SV=2
Length = 714
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 90/173 (52%), Gaps = 13/173 (7%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAAL 158
SKT LV N+ +++T E ++ +FE+ I++ + + +++G AF+ S ++A AL
Sbjct: 485 SKT-LVLSNLSYSATEETLQEVFEK---ATFIKVPQNQQGKSKGYAFIEFASFEDAKEAL 540
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISE 218
N+ E EGRT+++ +++ P + +P T LF+ LS + + L+E F E
Sbjct: 541 NSCNKMEIEGRTIRL---ELQGPRGSPNARSQPSKT--LFVKGLSEDTTEETLKESF--E 593
Query: 219 GWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271
G V A ++ S G+GFV F S++ A+ A A + I + L +
Sbjct: 594 GS--VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 644
Score = 38.1 bits (87), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 81/169 (47%), Gaps = 11/169 (6%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLE 162
L+A+N+ + T ++++ +FE L+I L + +++G+A++ S +A L +
Sbjct: 396 LLAKNLSFNITEDELKEVFED---ALEIRL-VSQDGKSKGIAYIEFKSEADAEKNLEEKQ 451
Query: 163 SYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA--TFNLFIANLSFEARAKDLREFFISEGW 220
E +GR++ + Y K + + ++ + L ++NLS+ A + L+E F +
Sbjct: 452 GAEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATF 511
Query: 221 DVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIAL 269
V + +S GY F+ F S + A+ A+++ I I L
Sbjct: 512 IKVP-----QNQQGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRL 555
Score = 34.7 bits (78), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 55/132 (41%), Gaps = 14/132 (10%)
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI 199
NR +V S ++ AL E G LKV +IK + P K A L
Sbjct: 347 NRKFGYVDFESAEDLEKAL------ELTG--LKVFGNEIKLEKPKGRDSKKVRAARTLLA 398
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
NLSF +L+E F D + ++ D +S G ++ FKS+ AE + QG
Sbjct: 399 KNLSFNITEDELKEVF----EDALEIRLVSQDG--KSKGIAYIEFKSEADAEKNLEEKQG 452
Query: 260 KVIMCLVIALSY 271
I ++L Y
Sbjct: 453 AEIDGRSVSLYY 464
>sp|P15771|NUCL_CHICK Nucleolin OS=Gallus gallus GN=NCL PE=1 SV=1
Length = 694
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 89/184 (48%), Gaps = 23/184 (12%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEAT 155
E SKT L+ N+ + ++ E ++ LF++ I++ +++ R +G AFV + ++A
Sbjct: 457 ERESKT-LIVNNLSYAASEETLQELFKK---ATSIKMPQNNQGRPKGYAFVEFPTAEDAK 512
Query: 156 AALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPF---ATFN-----LFIANLSFEAR 207
ALN+ + E EGR +++ ++ P Q FN LF+ LS +
Sbjct: 513 EALNSCNNTEIEGRAIRLEFS-------SPSWQKGNMNARGGFNQQSKTLFVRGLSEDTT 565
Query: 208 AKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVI 267
+ LRE F EG +SA ++ + S G+GFV F S + A+ A A + I +
Sbjct: 566 EETLRESF--EGS--ISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEIDGNKV 621
Query: 268 ALSY 271
L +
Sbjct: 622 TLDF 625
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 88/180 (48%), Gaps = 10/180 (5%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
E ++E ++T L +N+P+ T ++++ +FE L++ L ++ + ++G+A++ +
Sbjct: 363 ENKKERDART-LFVKNLPYRVTEDEMKNVFE---NALEVRLVLNKEGSSKGMAYIEFKTE 418
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDL 211
EA AL + E +GR + ++Y K + + + L + NLS+ A + L
Sbjct: 419 AEAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQKGGGE-RESKTLIVNNLSYAASEETL 477
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271
+E F ++ + +N R GY FV F + + A+ A+++ I I L +
Sbjct: 478 QELFKK-----ATSIKMPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLEF 532
Score = 36.2 bits (82), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATA 156
+ SKT L + + +T E +R FE G++ ++ ++G FV SP++A A
Sbjct: 550 QQSKT-LFVRGLSEDTTEETLRESFE--GSISARIVTDRDTGSSKGFGFVDFSSPEDAKA 606
Query: 157 ALNNLESYEFEGRTLKVNYAKIK 179
A +E E +G + +++AK K
Sbjct: 607 AKEAMEDGEIDGNKVTLDFAKPK 629
>sp|Q94901|LARK_DROME RNA-binding protein lark OS=Drosophila melanogaster GN=lark PE=1
SV=1
Length = 352
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 73/161 (45%), Gaps = 24/161 (14%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNL 161
+L N+ + ++RALFE++GTV++ ++ + FV M + + A+ NL
Sbjct: 8 KLFIGNLDEKTQATELRALFEKYGTVVECDVVKN-------YGFVHMETEQQGRDAIQNL 60
Query: 162 ESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWD 221
Y +KV AK ++ P T +F+ NL+ + RA ++RE F G
Sbjct: 61 NGYTLNEFAIKVEAAKSRRAPNTP--------TTKIFVGNLTDKTRAPEVRELFQKYGT- 111
Query: 222 VVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
VV +++ + YGFV + AI G+V+
Sbjct: 112 VVECDIVRN--------YGFVHLDCVGDVQDAIKELNGRVV 144
Score = 36.2 bits (82), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Query: 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAET 252
TF LFI NL + +A +LR F G VV +V+ + YGFV ++++
Sbjct: 5 GTFKLFIGNLDEKTQATELRALFEKYGT-VVECDVVKN--------YGFVHMETEQQGRD 55
Query: 253 AISAFQG 259
AI G
Sbjct: 56 AIQNLNG 62
>sp|P70372|ELAV1_MOUSE ELAV-like protein 1 OS=Mus musculus GN=Elavl1 PE=1 SV=2
Length = 326
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 76/169 (44%), Gaps = 11/169 (6%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGS 150
E ++ +T L+ +P T E++R+LF G V +L + G FV +
Sbjct: 11 EDCRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVT 70
Query: 151 PDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKD 210
+A A++ L + +T+KV+YA+ P V NL+I+ L KD
Sbjct: 71 AKDAERAISTLNGLRLQSKTIKVSYAR-----PSSEV----IKDANLYISGLPRTMTQKD 121
Query: 211 LREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ + F G ++++ V+ S G F+ F + AE AI++F G
Sbjct: 122 VEDMFSRFGR-IINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
Score = 40.4 bits (93), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 196 NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
NL + L ++LR F S G +V SA++I S GYGFV++ + K AE AIS
Sbjct: 21 NLIVNYLPQNMTQEELRSLFSSIG-EVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIS 79
Query: 256 AFQGKVIMCLVIALSY 271
G + I +SY
Sbjct: 80 TLNGLRLQSKTIKVSY 95
>sp|Q1JQ73|ELV1A_XENLA ELAV-like protein 1-A OS=Xenopus laevis GN=elavl1-a PE=1 SV=1
Length = 337
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 80/177 (45%), Gaps = 22/177 (12%)
Query: 95 EEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIEL------------SMHSKNRNRG 142
++ +T L+ +P T +++R+LF G V +L S SK + G
Sbjct: 14 RDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGFEMRSSSLSKGHSLG 73
Query: 143 LAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANL 202
FV + +A A+N L + +T+KV++A+ P + A NL+I+ L
Sbjct: 74 YGFVNYLNAKDAERAINTLNGLRLQSKTIKVSFAR-------PSSESIKDA--NLYISGL 124
Query: 203 SFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
KD+ + F+ G ++++ V+ S G F+ F + AE AI++F G
Sbjct: 125 PRTMTQKDVEDMFLPFGH-IINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNG 180
Score = 33.1 bits (74), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 120 LFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178
+F G V ++++ + N+ +G FVTM + +EA A+ +L Y +TL+V++
Sbjct: 274 MFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKTLQVSFKTS 333
Query: 179 K 179
K
Sbjct: 334 K 334
>sp|P27476|NSR1_YEAST Nuclear localization sequence-binding protein OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NSR1 PE=1
SV=1
Length = 414
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 85/190 (44%), Gaps = 11/190 (5%)
Query: 90 NTEQREEEYSKTRLV-AQNVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVT 147
N +Q+ EE + + + W+ E ++ FE G V+ + +R+RG +V
Sbjct: 156 NKKQKNEETEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVD 215
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYAKIK------KKNPFPPVQPKPFATFNLFIAN 201
+ A A+ ++ E +GR + + + K + F +P T LF+ N
Sbjct: 216 FENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDT--LFLGN 273
Query: 202 LSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKV 261
LSF A + E F G +VVS + H + G+G+V F + + A+ A+ A QG+
Sbjct: 274 LSFNADRDAIFELFAKHG-EVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEY 332
Query: 262 IMCLVIALSY 271
I + L +
Sbjct: 333 IDNRPVRLDF 342
>sp|Q15717|ELAV1_HUMAN ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1 SV=2
Length = 326
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 75/169 (44%), Gaps = 11/169 (6%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGS 150
E + +T L+ +P T +++R+LF G V +L + G FV +
Sbjct: 11 EDCRGDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVT 70
Query: 151 PDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKD 210
+A A+N L + +T+KV+YA+ P V NL+I+ L KD
Sbjct: 71 AKDAERAINTLNGLRLQSKTIKVSYAR-----PSSEV----IKDANLYISGLPRTMTQKD 121
Query: 211 LREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ + F G ++++ V+ S G F+ F + AE AI++F G
Sbjct: 122 VEDMFSRFG-RIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
Score = 38.5 bits (88), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 196 NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
NL + L +LR F S G +V SA++I S GYGFV++ + K AE AI+
Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIG-EVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIN 79
Query: 256 AFQGKVIMCLVIALSY 271
G + I +SY
Sbjct: 80 TLNGLRLQSKTIKVSY 95
>sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-b
PE=2 SV=1
Length = 633
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 80/167 (47%), Gaps = 14/167 (8%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ F Q+G L +++ ++RG FV+ ++A A++++ + G+ + V
Sbjct: 205 ERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + NL++ NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFTPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIALS 270
+V+ RS G+GFV F S + A A++ G+++ L +AL+
Sbjct: 324 KVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 71/143 (49%), Gaps = 11/143 (7%)
Query: 121 FEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179
F G +L I + R+ G A+V P +A AL+ + +G+ +++ +++
Sbjct: 31 FSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ-- 88
Query: 180 KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
++P + N+FI NL K L + F + G +++S +V+ +N S GY
Sbjct: 89 -RDP----SLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCKVVCDEN--GSKGY 140
Query: 240 GFVSFKSKKVAETAISAFQGKVI 262
GFV F++++ AE AI G ++
Sbjct: 141 GFVHFETQEAAERAIDKMNGMLL 163
Score = 34.7 bits (78), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
+ R Y L +N+ E +R F G++ ++ M R++G FV SP
Sbjct: 285 QDRITRYQGVNLYVKNLDDGIDDERLRKEFTPFGSITSAKVMMEG-GRSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVATKPLYVALAQRKEE 373
>sp|B4MM23|SHEP_DROWI Protein alan shepard OS=Drosophila willistoni GN=shep PE=3 SV=2
Length = 581
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 78/168 (46%), Gaps = 19/168 (11%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEA 154
E+ SKT L + + +T +D+ + Q+GT++ + + + N+ +G FV P A
Sbjct: 232 EQLSKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAYA 291
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
A+ L++ + ++ AK ++++P NL+IANL + DL E
Sbjct: 292 ENAVKGLQA-----KGVQAQMAKQQEQDPT-----------NLYIANLPPHFKETDL-EA 334
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
+S+ VVS I D S G GF +S++ E I F G I
Sbjct: 335 MLSKYGQVVSTR-ILRDQQMNSKGVGFARMESREKCEQIIQMFNGNTI 381
>sp|Q9WX39|RBPF_NOSS1 Putative RNA-binding protein RbpF OS=Nostoc sp. (strain PCC 7120 /
UTEX 2576) GN=rbpF PE=3 SV=3
Length = 105
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIEL-SMHSKNRNRGLAFVTMGSPDEATAALNNLESYE 165
N+ + T EDI +F ++G+V + L + R RG AFV MGS E TAA+ L+ E
Sbjct: 7 NLSYEVTQEDISNVFAEYGSVKRVVLPTDRETGRLRGFAFVEMGSDAEETAAIEGLDGAE 66
Query: 166 FEGRTLKVNYAKIKK 180
+ GR LKVN AK K+
Sbjct: 67 WMGRDLKVNKAKPKE 81
>sp|B3NGA1|SHEP_DROER Protein alan shepard OS=Drosophila erecta GN=shep PE=3 SV=1
Length = 582
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 76/165 (46%), Gaps = 19/165 (11%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAA 157
SKT L + + +T +D+ + Q+GT++ + + + N+ +G FV P A A
Sbjct: 229 SKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAFAECA 288
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+ L+ G+ ++ AK ++++P NL+IANL + DL E +S
Sbjct: 289 VKGLQ-----GKGVQAQMAKQQEQDPT-----------NLYIANLPPHFKETDL-EAMLS 331
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
+ VVS I D S G GF +S++ E I F G I
Sbjct: 332 KYGQVVSTR-ILRDQQMNSKGVGFARMESREKCEQIIQMFNGNTI 375
>sp|B4PIS2|SHEP_DROYA Protein alan shepard OS=Drosophila yakuba GN=shep PE=3 SV=1
Length = 582
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 76/165 (46%), Gaps = 19/165 (11%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAA 157
SKT L + + +T +D+ + Q+GT++ + + + N+ +G FV P A A
Sbjct: 229 SKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAFAECA 288
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+ L+ G+ ++ AK ++++P NL+IANL + DL E +S
Sbjct: 289 VKGLQ-----GKGVQAQMAKQQEQDPT-----------NLYIANLPPHFKETDL-EAMLS 331
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
+ VVS I D S G GF +S++ E I F G I
Sbjct: 332 KYGQVVSTR-ILRDQQMNSKGVGFARMESREKCEQIIQMFNGNTI 375
>sp|B4HUE4|SHEP_DROSE Protein alan shepard OS=Drosophila sechellia GN=shep PE=3 SV=1
Length = 579
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 76/165 (46%), Gaps = 19/165 (11%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAA 157
SKT L + + +T +D+ + Q+GT++ + + + N+ +G FV P A A
Sbjct: 229 SKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAFAECA 288
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+ L+ G+ ++ AK ++++P NL+IANL + DL E +S
Sbjct: 289 VKGLQ-----GKGVQAQMAKQQEQDPT-----------NLYIANLPPHFKETDL-EAMLS 331
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
+ VVS I D S G GF +S++ E I F G I
Sbjct: 332 KYGQVVSTR-ILRDQQMNSKGVGFARMESREKCEQIIQMFNGNTI 375
>sp|P78814|SRP2_SCHPO Pre-mRNA-splicing factor srp2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=srp2 PE=1 SV=2
Length = 365
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 83/178 (46%), Gaps = 20/178 (11%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAAL 158
S+TRL +P +T ED+ F+ +G +LD +L M+ G FV + +A +
Sbjct: 2 SETRLFVGRIPPQATREDMMDFFKGYGQILDCKL-MN------GFGFVEVEDARDARDIV 54
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNPFPPVQ------PKPFAT-FNLFIANLSFEARAKDL 211
N+ + EF G + V A+ +++ + P+P T F L + NLS + +DL
Sbjct: 55 NDFQGKEFMGSRIVVEPARGERRRRENFRESAASKYPRPRRTGFRLIVENLSEDVSWQDL 114
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIAL 269
++ G E F D R + G G V F +++ A+++ G+VI + L
Sbjct: 115 KDVMRKAG------EPTFTDAHRENPGAGVVEFSTEEDMRNALTSLNGEVIKGQAVTL 166
>sp|Q8MSV2|SHEP_DROME Protein alan shepard OS=Drosophila melanogaster GN=shep PE=1 SV=1
Length = 578
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 76/165 (46%), Gaps = 19/165 (11%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAA 157
SKT L + + +T +D+ + Q+GT++ + + + N+ +G FV P A A
Sbjct: 229 SKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAFAECA 288
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+ L+ G+ ++ AK ++++P NL+IANL + DL E +S
Sbjct: 289 VKGLQ-----GKGVQAQMAKQQEQDPT-----------NLYIANLPPHFKETDL-EAMLS 331
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
+ VVS I D S G GF +S++ E I F G I
Sbjct: 332 KYGQVVSTR-ILRDQQMNSKGVGFARMESREKCEQIIQMFNGNTI 375
>sp|Q74ZS6|PABP_ASHGO Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=PAB1 PE=3 SV=1
Length = 585
Score = 58.2 bits (139), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 79/171 (46%), Gaps = 11/171 (6%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N+ ++ E+ LF ++G + L S+ + RG FV A A++
Sbjct: 219 TNVYVKNIDQETSQEEFEELFGKYGKITSAVLEKDSEGKLRGFGFVNFEDHAAAAKAVDE 278
Query: 161 LESYEFEGRTLKVNYAKIK------KKNPFPPVQPKPFATF---NLFIANLSFEARAKDL 211
L EF+G+ L V A+ K K + + + A + NLF+ NL + L
Sbjct: 279 LNELEFKGQKLYVGRAQKKYERLQELKKQYEAARLEKLAKYQGVNLFVKNLDDSIDDEKL 338
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262
+E F G + SA+V+ D S G+GFV F + + A AI+ +++
Sbjct: 339 KEEFAPFGT-ITSAKVM-RDETGNSRGFGFVCFSTPEEATKAITEKNQQIV 387
Score = 34.7 bits (78), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 37/84 (44%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATA 156
+Y L +N+ + E ++ F GT+ ++ +RG FV +P+EAT
Sbjct: 318 KYQGVNLFVKNLDDSIDDEKLKEEFAPFGTITSAKVMRDETGNSRGFGFVCFSTPEEATK 377
Query: 157 ALNNLESYEFEGRTLKVNYAKIKK 180
A+ G+ L V A+ K+
Sbjct: 378 AITEKNQQIVAGKPLYVAIAQRKE 401
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.132 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,334,070
Number of Sequences: 539616
Number of extensions: 3893461
Number of successful extensions: 12667
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 302
Number of HSP's successfully gapped in prelim test: 397
Number of HSP's that attempted gapping in prelim test: 11207
Number of HSP's gapped (non-prelim): 1480
length of query: 274
length of database: 191,569,459
effective HSP length: 116
effective length of query: 158
effective length of database: 128,974,003
effective search space: 20377892474
effective search space used: 20377892474
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)