Query 024018
Match_columns 274
No_of_seqs 257 out of 2269
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 08:19:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024018.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024018hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 2.6E-35 5.7E-40 256.1 23.1 169 95-273 102-273 (346)
2 TIGR01645 half-pint poly-U bin 100.0 6.7E-34 1.4E-38 259.6 21.8 174 99-273 106-282 (612)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.2E-32 2.6E-37 243.2 22.0 165 99-273 2-169 (352)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.2E-31 2.5E-36 237.0 23.5 173 99-272 88-346 (352)
5 KOG0148 Apoptosis-promoting RN 100.0 1.8E-32 3.8E-37 220.1 16.2 167 100-273 62-236 (321)
6 TIGR01622 SF-CC1 splicing fact 100.0 7.3E-32 1.6E-36 246.1 22.5 176 96-273 85-264 (457)
7 TIGR01628 PABP-1234 polyadenyl 100.0 5.1E-30 1.1E-34 239.4 21.3 174 98-273 176-362 (562)
8 KOG0131 Splicing factor 3b, su 100.0 6.9E-31 1.5E-35 199.5 12.5 167 98-273 7-175 (203)
9 KOG0145 RNA-binding protein EL 100.0 2.4E-30 5.3E-35 206.8 15.4 167 96-272 37-206 (360)
10 TIGR01628 PABP-1234 polyadenyl 100.0 9.1E-30 2E-34 237.7 21.2 161 102-271 2-163 (562)
11 KOG0144 RNA-binding protein CU 100.0 3.3E-30 7.2E-35 218.9 14.4 166 97-272 31-203 (510)
12 TIGR01648 hnRNP-R-Q heterogene 100.0 5.2E-29 1.1E-33 227.3 21.3 166 99-273 57-305 (578)
13 TIGR01642 U2AF_lg U2 snRNP aux 100.0 1.1E-28 2.4E-33 228.1 21.7 172 95-273 170-373 (509)
14 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 2.2E-28 4.8E-33 223.5 21.8 165 100-274 2-173 (481)
15 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 4.9E-28 1.1E-32 221.3 21.9 169 98-273 273-478 (481)
16 TIGR01642 U2AF_lg U2 snRNP aux 100.0 2.4E-27 5.3E-32 219.1 23.1 174 98-272 293-499 (509)
17 KOG0117 Heterogeneous nuclear 100.0 1.2E-27 2.5E-32 204.3 18.2 167 98-273 81-329 (506)
18 KOG0145 RNA-binding protein EL 100.0 7.8E-28 1.7E-32 192.4 16.0 177 95-272 122-355 (360)
19 KOG0127 Nucleolar protein fibr 100.0 1.1E-27 2.3E-32 208.9 16.0 171 100-272 5-193 (678)
20 KOG0127 Nucleolar protein fibr 100.0 9.1E-27 2E-31 203.2 18.8 172 100-272 117-375 (678)
21 TIGR01622 SF-CC1 splicing fact 99.9 8.9E-25 1.9E-29 199.5 22.4 168 100-272 186-445 (457)
22 KOG0124 Polypyrimidine tract-b 99.9 1.6E-26 3.5E-31 192.9 9.3 169 100-271 113-286 (544)
23 KOG0109 RNA-binding protein LA 99.9 4.8E-26 1E-30 184.8 11.0 145 101-272 3-147 (346)
24 KOG0144 RNA-binding protein CU 99.9 6.4E-26 1.4E-30 192.9 11.9 175 98-273 122-502 (510)
25 KOG0110 RNA-binding protein (R 99.9 8.6E-25 1.9E-29 196.3 14.4 175 98-273 513-691 (725)
26 KOG0146 RNA-binding protein ET 99.9 8.9E-25 1.9E-29 175.6 8.8 174 99-273 18-363 (371)
27 KOG0123 Polyadenylate-binding 99.9 1.8E-23 3.9E-28 183.0 17.1 147 102-271 3-149 (369)
28 KOG0148 Apoptosis-promoting RN 99.9 8.2E-24 1.8E-28 170.3 10.7 137 97-272 3-139 (321)
29 KOG0147 Transcriptional coacti 99.9 1.6E-24 3.5E-29 189.8 7.1 179 91-271 170-354 (549)
30 KOG4205 RNA-binding protein mu 99.9 3E-23 6.4E-28 175.8 11.0 168 99-272 5-173 (311)
31 TIGR01645 half-pint poly-U bin 99.9 2.8E-21 6.1E-26 177.1 21.9 80 99-178 203-283 (612)
32 KOG0123 Polyadenylate-binding 99.9 6E-22 1.3E-26 173.4 15.8 171 97-272 73-243 (369)
33 KOG0105 Alternative splicing f 99.9 2.1E-20 4.5E-25 142.8 15.2 156 98-263 4-176 (241)
34 KOG0147 Transcriptional coacti 99.9 9.3E-21 2E-25 166.3 13.3 168 101-274 279-527 (549)
35 KOG4206 Spliceosomal protein s 99.8 1.2E-19 2.5E-24 143.7 16.0 165 101-273 10-220 (221)
36 KOG4211 Splicing factor hnRNP- 99.8 9.7E-19 2.1E-23 151.9 15.9 167 99-270 9-177 (510)
37 KOG1548 Transcription elongati 99.8 4E-18 8.7E-23 142.0 18.0 169 98-271 132-348 (382)
38 PLN03134 glycine-rich RNA-bind 99.8 2.3E-18 5.1E-23 132.0 12.9 85 97-181 31-116 (144)
39 KOG4212 RNA-binding protein hn 99.8 1.6E-17 3.5E-22 142.2 16.3 173 99-273 43-292 (608)
40 PLN03134 glycine-rich RNA-bind 99.8 3.6E-18 7.8E-23 131.0 11.1 80 193-273 33-112 (144)
41 KOG0110 RNA-binding protein (R 99.8 9E-18 1.9E-22 151.5 13.3 172 96-273 381-596 (725)
42 KOG0106 Alternative splicing f 99.7 3E-18 6.6E-23 137.0 7.9 153 102-270 3-166 (216)
43 PF00076 RRM_1: RNA recognitio 99.7 4.9E-17 1.1E-21 109.4 9.6 70 103-172 1-70 (70)
44 KOG0124 Polypyrimidine tract-b 99.7 1.9E-16 4E-21 133.0 14.4 177 93-270 203-530 (544)
45 KOG1457 RNA binding protein (c 99.7 5E-16 1.1E-20 122.3 15.1 161 98-263 32-274 (284)
46 KOG0120 Splicing factor U2AF, 99.7 1.3E-16 2.9E-21 141.9 11.4 175 96-271 285-488 (500)
47 KOG1190 Polypyrimidine tract-b 99.7 1.7E-15 3.7E-20 128.9 17.3 165 100-274 297-490 (492)
48 KOG0121 Nuclear cap-binding pr 99.7 6.5E-17 1.4E-21 116.5 7.0 86 95-180 31-117 (153)
49 PF14259 RRM_6: RNA recognitio 99.7 5.3E-16 1.1E-20 104.5 9.6 70 103-172 1-70 (70)
50 PF00076 RRM_1: RNA recognitio 99.7 6.2E-16 1.4E-20 103.9 9.8 70 197-268 1-70 (70)
51 TIGR01659 sex-lethal sex-letha 99.7 3.4E-16 7.4E-21 136.6 10.7 81 192-273 105-185 (346)
52 KOG0125 Ataxin 2-binding prote 99.7 4.6E-16 1E-20 129.0 10.6 83 97-180 93-175 (376)
53 COG0724 RNA-binding proteins ( 99.7 1.3E-15 2.8E-20 129.2 13.6 159 100-259 115-289 (306)
54 KOG0149 Predicted RNA-binding 99.6 6.2E-16 1.4E-20 123.0 8.8 80 99-179 11-91 (247)
55 TIGR01648 hnRNP-R-Q heterogene 99.6 1.2E-15 2.6E-20 140.1 11.5 117 99-223 232-369 (578)
56 KOG0149 Predicted RNA-binding 99.6 3.7E-16 8.1E-21 124.2 7.2 79 194-274 12-90 (247)
57 KOG0129 Predicted RNA-binding 99.6 8.3E-15 1.8E-19 128.4 15.8 159 97-256 256-432 (520)
58 KOG4212 RNA-binding protein hn 99.6 9.2E-15 2E-19 125.4 15.4 78 99-176 214-291 (608)
59 KOG0122 Translation initiation 99.6 2.4E-15 5.1E-20 120.1 10.6 82 98-179 187-269 (270)
60 PLN03120 nucleic acid binding 99.6 2.9E-15 6.4E-20 123.0 10.5 78 100-180 4-81 (260)
61 PF14259 RRM_6: RNA recognitio 99.6 5.3E-15 1.2E-19 99.6 9.4 70 197-268 1-70 (70)
62 KOG0125 Ataxin 2-binding prote 99.6 2.1E-15 4.5E-20 125.1 8.7 76 194-272 96-171 (376)
63 KOG0122 Translation initiation 99.6 3.3E-15 7.1E-20 119.3 9.1 81 192-273 187-267 (270)
64 KOG4207 Predicted splicing fac 99.6 2.1E-15 4.6E-20 117.5 6.6 79 194-273 13-91 (256)
65 KOG0121 Nuclear cap-binding pr 99.6 4.6E-15 1E-19 107.0 7.5 79 194-273 36-114 (153)
66 KOG1365 RNA-binding protein Fu 99.6 4.1E-15 8.9E-20 125.6 8.2 168 101-270 162-357 (508)
67 KOG0107 Alternative splicing f 99.6 7.3E-15 1.6E-19 111.7 8.2 79 99-181 9-87 (195)
68 KOG0117 Heterogeneous nuclear 99.6 5.1E-14 1.1E-18 121.3 13.7 120 147-272 40-161 (506)
69 KOG1190 Polypyrimidine tract-b 99.6 1.3E-14 2.8E-19 123.6 9.7 168 97-274 25-227 (492)
70 PLN03213 repressor of silencin 99.6 1.3E-14 2.9E-19 126.3 9.7 81 96-179 6-88 (759)
71 PLN03121 nucleic acid binding 99.6 3.1E-14 6.7E-19 115.2 10.7 79 99-180 4-82 (243)
72 PLN03120 nucleic acid binding 99.6 2.6E-14 5.7E-19 117.4 10.2 75 194-273 4-78 (260)
73 KOG0114 Predicted RNA-binding 99.6 3.1E-14 6.7E-19 99.0 8.8 83 96-180 14-96 (124)
74 KOG0126 Predicted RNA-binding 99.5 6.9E-16 1.5E-20 117.9 0.4 83 96-178 31-114 (219)
75 KOG0130 RNA-binding protein RB 99.5 1.5E-14 3.2E-19 105.4 7.2 83 191-274 69-151 (170)
76 smart00362 RRM_2 RNA recogniti 99.5 6.2E-14 1.4E-18 93.9 9.7 72 102-174 1-72 (72)
77 KOG4207 Predicted splicing fac 99.5 1.2E-14 2.6E-19 113.4 6.4 83 98-180 11-94 (256)
78 KOG0113 U1 small nuclear ribon 99.5 6.5E-14 1.4E-18 114.9 10.9 82 191-273 98-179 (335)
79 KOG0107 Alternative splicing f 99.5 4.2E-14 9.1E-19 107.6 7.6 74 194-273 10-83 (195)
80 smart00362 RRM_2 RNA recogniti 99.5 2E-13 4.4E-18 91.4 9.6 72 196-270 1-72 (72)
81 KOG0111 Cyclophilin-type pepti 99.5 1.6E-14 3.4E-19 113.7 4.4 85 97-181 7-92 (298)
82 KOG0113 U1 small nuclear ribon 99.5 1.5E-13 3.2E-18 112.9 10.0 83 97-179 98-181 (335)
83 cd00590 RRM RRM (RNA recogniti 99.5 4.1E-13 8.8E-18 90.4 10.3 74 102-175 1-74 (74)
84 KOG0120 Splicing factor U2AF, 99.5 7.7E-14 1.7E-18 124.4 8.4 171 96-273 171-367 (500)
85 PLN03213 repressor of silencin 99.5 1.6E-13 3.4E-18 119.7 9.8 76 193-273 9-86 (759)
86 KOG0126 Predicted RNA-binding 99.5 4.4E-15 9.4E-20 113.5 0.1 77 194-271 35-111 (219)
87 smart00360 RRM RNA recognition 99.5 3E-13 6.5E-18 90.2 8.9 71 199-270 1-71 (71)
88 smart00360 RRM RNA recognition 99.5 4.4E-13 9.6E-18 89.4 8.8 70 105-174 1-71 (71)
89 KOG0114 Predicted RNA-binding 99.5 4.1E-13 8.8E-18 93.4 8.5 75 194-272 18-92 (124)
90 PLN03121 nucleic acid binding 99.4 6.8E-13 1.5E-17 107.4 10.2 73 194-271 5-77 (243)
91 COG0724 RNA-binding proteins ( 99.4 5.7E-13 1.2E-17 112.9 10.2 79 194-273 115-193 (306)
92 KOG0108 mRNA cleavage and poly 99.4 2.5E-13 5.5E-18 120.4 8.2 81 101-181 19-100 (435)
93 smart00361 RRM_1 RNA recogniti 99.4 9.5E-13 2.1E-17 88.5 8.5 62 208-270 2-70 (70)
94 KOG0108 mRNA cleavage and poly 99.4 3.3E-13 7.3E-18 119.6 7.8 77 195-272 19-95 (435)
95 cd00590 RRM RRM (RNA recogniti 99.4 2.5E-12 5.4E-17 86.5 10.4 74 196-271 1-74 (74)
96 KOG1456 Heterogeneous nuclear 99.4 2.1E-11 4.5E-16 103.2 17.7 163 96-264 283-474 (494)
97 KOG1456 Heterogeneous nuclear 99.4 4.6E-12 1E-16 107.1 13.5 162 99-273 30-197 (494)
98 PF13893 RRM_5: RNA recognitio 99.4 2E-12 4.4E-17 82.9 8.6 56 211-272 1-56 (56)
99 KOG0111 Cyclophilin-type pepti 99.4 1.7E-13 3.7E-18 107.9 3.9 79 194-273 10-88 (298)
100 KOG0130 RNA-binding protein RB 99.4 6.5E-13 1.4E-17 96.8 6.3 83 99-181 71-154 (170)
101 PF13893 RRM_5: RNA recognitio 99.4 2.8E-12 6E-17 82.2 7.8 56 117-176 1-56 (56)
102 KOG4211 Splicing factor hnRNP- 99.4 5.4E-12 1.2E-16 110.3 11.2 166 99-269 102-352 (510)
103 KOG0131 Splicing factor 3b, su 99.4 1.6E-12 3.4E-17 99.7 6.7 78 194-272 9-86 (203)
104 KOG0105 Alternative splicing f 99.3 2.3E-12 5.1E-17 99.0 6.1 76 194-273 6-81 (241)
105 KOG0226 RNA-binding proteins [ 99.3 1.2E-11 2.6E-16 99.7 9.6 166 101-270 97-265 (290)
106 smart00361 RRM_1 RNA recogniti 99.3 1.3E-11 2.7E-16 83.0 8.1 60 114-173 2-69 (70)
107 KOG4454 RNA binding protein (R 99.3 6.3E-13 1.4E-17 104.7 0.9 142 99-261 8-149 (267)
108 KOG0415 Predicted peptidyl pro 99.3 7.3E-12 1.6E-16 105.2 6.9 83 190-273 235-317 (479)
109 KOG0112 Large RNA-binding prot 99.2 6.1E-12 1.3E-16 116.8 3.7 162 94-273 366-529 (975)
110 KOG0146 RNA-binding protein ET 99.2 2.7E-11 5.8E-16 98.3 6.5 94 168-272 2-98 (371)
111 KOG0132 RNA polymerase II C-te 99.2 4.9E-11 1.1E-15 109.3 8.1 110 99-217 420-529 (894)
112 KOG4208 Nucleolar RNA-binding 99.2 1.3E-10 2.8E-15 91.2 8.4 78 194-271 49-126 (214)
113 KOG4210 Nuclear localization s 99.2 1.9E-11 4.2E-16 103.7 4.1 172 99-272 87-261 (285)
114 KOG4206 Spliceosomal protein s 99.2 8.1E-11 1.7E-15 93.7 7.3 76 194-273 9-88 (221)
115 KOG0109 RNA-binding protein LA 99.2 4.8E-11 1E-15 98.0 6.1 69 195-272 3-71 (346)
116 KOG1365 RNA-binding protein Fu 99.1 3.8E-10 8.2E-15 95.9 8.9 166 99-267 59-235 (508)
117 KOG0128 RNA-binding protein SA 99.1 5.6E-12 1.2E-16 116.6 -2.3 143 98-268 665-808 (881)
118 KOG0132 RNA polymerase II C-te 99.1 2.9E-10 6.4E-15 104.3 7.9 73 194-273 421-493 (894)
119 KOG4208 Nucleolar RNA-binding 99.1 7.3E-10 1.6E-14 87.0 8.0 83 97-179 46-130 (214)
120 KOG0415 Predicted peptidyl pro 99.0 4.9E-10 1.1E-14 94.4 6.7 82 98-179 237-319 (479)
121 KOG4307 RNA binding protein RB 99.0 4.7E-09 1E-13 95.5 12.6 168 99-270 310-509 (944)
122 KOG0153 Predicted RNA-binding 99.0 1.5E-09 3.2E-14 91.4 8.1 79 96-179 224-303 (377)
123 KOG4307 RNA binding protein RB 99.0 2.8E-09 6.2E-14 96.9 10.2 80 98-177 432-512 (944)
124 KOG0533 RRM motif-containing p 98.9 4.1E-09 8.9E-14 86.6 8.6 85 97-181 80-164 (243)
125 KOG4661 Hsp27-ERE-TATA-binding 98.9 6.5E-09 1.4E-13 92.7 9.6 84 96-179 401-485 (940)
126 KOG4205 RNA-binding protein mu 98.9 2.7E-09 5.8E-14 91.1 6.6 154 99-259 96-256 (311)
127 PF04059 RRM_2: RNA recognitio 98.9 1.7E-08 3.6E-13 71.3 8.9 80 195-274 2-86 (97)
128 KOG2193 IGF-II mRNA-binding pr 98.8 2.8E-10 6.1E-15 97.9 -1.4 151 101-271 2-153 (584)
129 KOG0153 Predicted RNA-binding 98.8 1.2E-08 2.6E-13 85.9 8.3 77 190-273 224-301 (377)
130 KOG4660 Protein Mei2, essentia 98.8 3.1E-09 6.7E-14 94.6 5.0 166 94-272 69-247 (549)
131 KOG4661 Hsp27-ERE-TATA-binding 98.8 1.3E-08 2.8E-13 90.8 7.8 80 193-273 404-483 (940)
132 KOG4209 Splicing factor RNPS1, 98.8 9.5E-09 2.1E-13 84.6 6.0 85 94-179 95-180 (231)
133 KOG0116 RasGAP SH3 binding pro 98.8 2.5E-08 5.5E-13 88.4 8.7 85 96-181 284-369 (419)
134 KOG0533 RRM motif-containing p 98.7 4.3E-08 9.3E-13 80.6 8.2 76 194-271 83-158 (243)
135 KOG1457 RNA binding protein (c 98.7 7.5E-08 1.6E-12 76.6 8.6 80 194-273 34-116 (284)
136 KOG4209 Splicing factor RNPS1, 98.7 2.5E-08 5.5E-13 82.1 5.7 81 191-273 98-178 (231)
137 KOG0151 Predicted splicing reg 98.7 6.6E-08 1.4E-12 88.4 7.8 82 97-178 171-256 (877)
138 PF04059 RRM_2: RNA recognitio 98.7 3.3E-07 7.1E-12 64.8 9.5 81 100-180 1-88 (97)
139 KOG4676 Splicing factor, argin 98.6 2.2E-08 4.8E-13 85.6 3.2 156 101-263 8-214 (479)
140 KOG0116 RasGAP SH3 binding pro 98.6 1.3E-07 2.7E-12 84.0 7.2 76 195-272 289-364 (419)
141 KOG0106 Alternative splicing f 98.6 6.4E-08 1.4E-12 77.9 4.0 70 195-273 2-71 (216)
142 KOG0226 RNA-binding proteins [ 98.5 1E-07 2.2E-12 77.3 4.9 84 96-179 186-270 (290)
143 KOG4660 Protein Mei2, essentia 98.5 6.6E-08 1.4E-12 86.3 4.0 72 191-268 72-143 (549)
144 KOG4454 RNA binding protein (R 98.5 5.5E-08 1.2E-12 77.1 2.5 76 193-271 8-83 (267)
145 PF11608 Limkain-b1: Limkain b 98.5 6.4E-07 1.4E-11 60.4 7.2 68 195-272 3-74 (90)
146 KOG1548 Transcription elongati 98.5 7.7E-07 1.7E-11 75.2 8.7 79 194-274 134-220 (382)
147 KOG0151 Predicted splicing reg 98.4 4.4E-07 9.5E-12 83.1 6.6 82 191-273 171-255 (877)
148 PF11608 Limkain-b1: Limkain b 98.4 2.6E-06 5.7E-11 57.5 7.4 71 101-180 3-78 (90)
149 KOG0128 RNA-binding protein SA 98.2 6E-08 1.3E-12 90.4 -4.5 165 97-263 568-735 (881)
150 PF08777 RRM_3: RNA binding mo 98.1 3.8E-06 8.2E-11 60.7 4.5 68 195-269 2-74 (105)
151 COG5175 MOT2 Transcriptional r 98.1 7.6E-06 1.6E-10 69.1 5.9 117 99-216 113-242 (480)
152 KOG4849 mRNA cleavage factor I 97.9 1.2E-05 2.6E-10 68.2 4.7 78 97-174 77-157 (498)
153 KOG1996 mRNA splicing factor [ 97.9 4.6E-05 9.9E-10 63.3 7.3 65 207-272 299-364 (378)
154 KOG1995 Conserved Zn-finger pr 97.9 1.3E-05 2.8E-10 68.5 3.8 79 194-273 66-152 (351)
155 PF08777 RRM_3: RNA binding mo 97.8 3.9E-05 8.5E-10 55.4 5.5 57 101-162 2-58 (105)
156 KOG1995 Conserved Zn-finger pr 97.8 1.8E-05 3.8E-10 67.6 4.2 84 97-180 63-155 (351)
157 KOG2314 Translation initiation 97.8 5.8E-05 1.3E-09 67.9 6.3 79 97-175 55-140 (698)
158 KOG0115 RNA-binding protein p5 97.8 9.5E-05 2.1E-09 60.4 6.9 88 153-258 6-93 (275)
159 PF14605 Nup35_RRM_2: Nup53/35 97.7 9.2E-05 2E-09 46.4 5.2 52 101-158 2-53 (53)
160 KOG4210 Nuclear localization s 97.7 2.1E-05 4.5E-10 67.1 2.7 82 100-182 184-267 (285)
161 KOG2314 Translation initiation 97.7 0.00011 2.5E-09 66.1 7.3 74 194-269 58-138 (698)
162 COG5175 MOT2 Transcriptional r 97.7 0.0001 2.2E-09 62.4 6.6 77 195-272 115-200 (480)
163 KOG3152 TBP-binding protein, a 97.6 3.6E-05 7.7E-10 62.8 2.6 72 194-266 74-157 (278)
164 PF05172 Nup35_RRM: Nup53/35/4 97.6 0.00048 1E-08 49.1 7.5 78 99-178 5-91 (100)
165 KOG3152 TBP-binding protein, a 97.5 6.3E-05 1.4E-09 61.4 2.7 72 99-170 73-157 (278)
166 KOG1855 Predicted RNA-binding 97.5 0.00033 7.2E-09 61.2 6.9 71 188-259 225-308 (484)
167 KOG2202 U2 snRNP splicing fact 97.5 5E-05 1.1E-09 62.1 1.7 65 115-179 83-148 (260)
168 KOG0129 Predicted RNA-binding 97.5 0.0005 1.1E-08 61.6 7.8 63 98-160 368-432 (520)
169 PF14605 Nup35_RRM_2: Nup53/35 97.4 0.00077 1.7E-08 42.2 5.8 52 195-254 2-53 (53)
170 KOG1855 Predicted RNA-binding 97.3 0.00019 4E-09 62.8 3.5 68 96-163 227-308 (484)
171 PF05172 Nup35_RRM: Nup53/35/4 97.3 0.0027 5.8E-08 45.3 8.5 76 194-272 6-89 (100)
172 KOG2202 U2 snRNP splicing fact 97.3 0.00013 2.9E-09 59.6 1.8 63 209-272 83-145 (260)
173 KOG1996 mRNA splicing factor [ 97.2 0.0014 2.9E-08 54.8 7.0 66 114-179 300-367 (378)
174 PF08952 DUF1866: Domain of un 97.1 0.0021 4.4E-08 48.7 6.8 59 115-181 51-109 (146)
175 KOG4849 mRNA cleavage factor I 97.1 0.00049 1.1E-08 58.7 3.7 72 194-266 80-153 (498)
176 KOG2416 Acinus (induces apopto 97.0 0.00062 1.3E-08 61.9 3.7 78 190-273 440-520 (718)
177 KOG0804 Cytoplasmic Zn-finger 96.9 0.0094 2E-07 52.8 9.7 67 100-168 74-142 (493)
178 PF08952 DUF1866: Domain of un 96.8 0.01 2.2E-07 45.0 8.3 71 191-271 24-103 (146)
179 PF10567 Nab6_mRNP_bdg: RNA-re 96.7 0.079 1.7E-06 44.6 13.2 163 96-259 11-213 (309)
180 PF07576 BRAP2: BRCA1-associat 96.6 0.029 6.4E-07 40.7 9.0 68 99-167 12-80 (110)
181 PF10309 DUF2414: Protein of u 96.5 0.017 3.8E-07 37.1 6.6 55 195-257 6-62 (62)
182 KOG2416 Acinus (induces apopto 96.5 0.002 4.4E-08 58.7 3.0 78 97-179 441-522 (718)
183 KOG0115 RNA-binding protein p5 96.5 0.0033 7.1E-08 51.6 3.9 75 101-175 32-110 (275)
184 KOG4285 Mitotic phosphoprotein 96.5 0.054 1.2E-06 45.7 11.0 73 100-179 197-270 (350)
185 PF10309 DUF2414: Protein of u 96.4 0.026 5.6E-07 36.3 7.1 56 99-161 4-62 (62)
186 PF15023 DUF4523: Protein of u 96.4 0.025 5.4E-07 42.5 7.7 73 191-272 83-159 (166)
187 KOG0112 Large RNA-binding prot 96.4 0.0057 1.2E-07 58.4 5.2 80 97-181 452-533 (975)
188 PF03467 Smg4_UPF3: Smg-4/UPF3 96.0 0.012 2.7E-07 46.6 4.7 82 97-178 4-97 (176)
189 KOG2068 MOT2 transcription fac 95.8 0.0031 6.7E-08 53.8 0.8 81 99-179 76-163 (327)
190 PF07576 BRAP2: BRCA1-associat 95.8 0.16 3.4E-06 37.0 9.4 68 194-263 13-80 (110)
191 PF15023 DUF4523: Protein of u 95.8 0.033 7.1E-07 41.9 5.8 75 97-178 83-161 (166)
192 KOG2591 c-Mpl binding protein, 95.7 0.04 8.7E-07 50.2 7.1 97 150-268 146-245 (684)
193 PF07292 NID: Nmi/IFP 35 domai 95.4 0.016 3.4E-07 40.2 2.9 73 144-217 1-75 (88)
194 PF08675 RNA_bind: RNA binding 95.4 0.095 2.1E-06 35.7 6.4 56 99-162 8-63 (87)
195 PF04847 Calcipressin: Calcipr 95.4 0.069 1.5E-06 42.6 6.8 60 207-273 8-69 (184)
196 PF04847 Calcipressin: Calcipr 95.3 0.051 1.1E-06 43.3 6.0 63 113-180 8-72 (184)
197 KOG2135 Proteins containing th 95.2 0.011 2.3E-07 52.8 2.0 78 97-180 369-447 (526)
198 KOG4676 Splicing factor, argin 95.2 0.036 7.8E-07 48.3 5.0 74 195-270 8-84 (479)
199 KOG4574 RNA-binding protein (c 95.1 0.015 3.2E-07 55.4 2.6 71 196-273 300-372 (1007)
200 KOG2193 IGF-II mRNA-binding pr 95.0 0.023 5E-07 50.0 3.5 70 195-272 2-73 (584)
201 PF03467 Smg4_UPF3: Smg-4/UPF3 95.0 0.021 4.5E-07 45.4 2.7 70 194-263 7-81 (176)
202 KOG4574 RNA-binding protein (c 94.5 0.1 2.2E-06 49.9 6.6 74 101-179 299-374 (1007)
203 PF11767 SET_assoc: Histone ly 94.5 0.27 5.9E-06 32.1 6.7 55 111-173 11-65 (66)
204 PF08675 RNA_bind: RNA binding 94.2 0.29 6.2E-06 33.4 6.5 55 196-259 10-64 (87)
205 KOG2068 MOT2 transcription fac 94.2 0.016 3.4E-07 49.6 0.5 76 195-271 78-159 (327)
206 KOG2135 Proteins containing th 94.2 0.042 9.2E-07 49.1 3.1 68 197-272 375-443 (526)
207 KOG4285 Mitotic phosphoprotein 93.5 0.2 4.3E-06 42.4 5.6 64 194-266 197-260 (350)
208 KOG0804 Cytoplasmic Zn-finger 93.3 0.27 5.9E-06 43.9 6.4 68 194-263 74-141 (493)
209 KOG2591 c-Mpl binding protein, 92.7 0.2 4.3E-06 45.9 4.8 71 98-174 173-247 (684)
210 PF03880 DbpA: DbpA RNA bindin 92.5 0.88 1.9E-05 30.4 6.8 60 204-272 11-74 (74)
211 PF03880 DbpA: DbpA RNA bindin 92.3 0.76 1.7E-05 30.7 6.3 59 110-176 11-74 (74)
212 KOG2253 U1 snRNP complex, subu 92.1 0.23 4.9E-06 46.4 4.5 110 99-216 39-157 (668)
213 PF14111 DUF4283: Domain of un 91.3 0.5 1.1E-05 36.2 5.2 117 103-228 18-138 (153)
214 PF11767 SET_assoc: Histone ly 91.3 1.1 2.4E-05 29.2 6.0 56 204-269 10-65 (66)
215 KOG2318 Uncharacterized conser 88.5 3.3 7.2E-05 38.4 8.7 42 97-138 171-217 (650)
216 PRK14548 50S ribosomal protein 86.6 3.4 7.3E-05 28.4 6.0 58 197-257 23-81 (84)
217 KOG4410 5-formyltetrahydrofola 86.2 10 0.00022 32.1 9.6 56 101-161 331-394 (396)
218 TIGR03636 L23_arch archaeal ri 85.2 4.6 0.0001 27.2 6.0 58 197-257 16-74 (77)
219 KOG2253 U1 snRNP complex, subu 84.5 0.87 1.9E-05 42.7 3.0 69 191-269 37-105 (668)
220 KOG4213 RNA-binding protein La 84.2 1.2 2.6E-05 35.0 3.1 83 83-171 94-179 (205)
221 KOG4410 5-formyltetrahydrofola 73.8 16 0.00036 31.0 6.9 48 194-247 330-377 (396)
222 PRK14548 50S ribosomal protein 71.5 19 0.00042 24.7 5.8 56 102-159 22-79 (84)
223 PF15513 DUF4651: Domain of un 70.9 12 0.00027 23.9 4.3 20 115-134 9-28 (62)
224 smart00596 PRE_C2HC PRE_C2HC d 70.8 7.7 0.00017 25.5 3.5 60 209-272 2-62 (69)
225 PTZ00191 60S ribosomal protein 70.4 20 0.00043 27.3 6.1 58 196-256 83-141 (145)
226 TIGR03636 L23_arch archaeal ri 68.9 26 0.00056 23.6 5.9 56 102-159 15-72 (77)
227 PF07530 PRE_C2HC: Associated 67.1 12 0.00025 24.6 3.8 62 209-273 2-63 (68)
228 PF03468 XS: XS domain; Inter 65.5 7.4 0.00016 28.5 3.0 38 112-151 29-66 (116)
229 KOG4019 Calcineurin-mediated s 63.9 13 0.00028 29.5 4.1 77 101-182 11-93 (193)
230 KOG4483 Uncharacterized conser 62.7 23 0.0005 31.6 5.8 55 100-160 391-446 (528)
231 KOG4483 Uncharacterized conser 61.6 24 0.00051 31.5 5.7 56 194-256 391-446 (528)
232 PF07530 PRE_C2HC: Associated 60.5 21 0.00045 23.4 4.1 63 115-180 2-66 (68)
233 KOG1295 Nonsense-mediated deca 58.6 14 0.00031 32.7 3.9 68 99-166 6-77 (376)
234 PF10567 Nab6_mRNP_bdg: RNA-re 56.8 31 0.00066 29.6 5.4 79 193-272 14-105 (309)
235 KOG4019 Calcineurin-mediated s 56.7 17 0.00036 28.8 3.6 38 236-273 50-88 (193)
236 smart00596 PRE_C2HC PRE_C2HC d 56.2 23 0.0005 23.3 3.6 62 115-179 2-65 (69)
237 TIGR02542 B_forsyth_147 Bacter 51.6 28 0.0006 25.4 3.8 115 108-247 11-129 (145)
238 KOG2891 Surface glycoprotein [ 50.9 21 0.00046 30.2 3.6 39 96-134 145-195 (445)
239 PF08734 GYD: GYD domain; Int 49.0 88 0.0019 21.7 6.6 49 207-259 21-69 (91)
240 CHL00030 rpl23 ribosomal prote 47.7 72 0.0016 22.3 5.4 36 196-231 20-56 (93)
241 KOG2891 Surface glycoprotein [ 47.6 44 0.00096 28.3 5.0 68 194-262 149-247 (445)
242 KOG2295 C2H2 Zn-finger protein 47.2 2.9 6.4E-05 38.6 -2.1 69 194-263 231-299 (648)
243 KOG4008 rRNA processing protei 46.1 18 0.0004 29.8 2.4 35 96-130 36-70 (261)
244 PF07292 NID: Nmi/IFP 35 domai 45.8 13 0.00027 25.9 1.3 27 96-122 48-74 (88)
245 PRK11901 hypothetical protein; 45.3 57 0.0012 28.4 5.4 58 195-258 246-305 (327)
246 PTZ00191 60S ribosomal protein 45.1 86 0.0019 24.0 5.8 53 102-156 83-137 (145)
247 PF02714 DUF221: Domain of unk 45.0 36 0.00077 29.6 4.4 56 144-216 1-56 (325)
248 KOG3424 40S ribosomal protein 43.8 63 0.0014 23.7 4.6 47 204-251 33-83 (132)
249 COG5193 LHP1 La protein, small 41.9 11 0.00024 33.5 0.7 62 98-159 172-244 (438)
250 PRK12280 rplW 50S ribosomal pr 41.3 98 0.0021 24.0 5.7 35 196-230 23-58 (158)
251 PRK05738 rplW 50S ribosomal pr 39.8 71 0.0015 22.3 4.4 36 196-231 21-57 (92)
252 PF11823 DUF3343: Protein of u 39.0 45 0.00098 21.9 3.2 26 238-263 2-27 (73)
253 COG0018 ArgS Arginyl-tRNA synt 36.5 3.9E+02 0.0085 25.6 10.0 101 110-230 56-165 (577)
254 PF09707 Cas_Cas2CT1978: CRISP 35.3 90 0.0019 21.5 4.2 48 100-149 25-72 (86)
255 COG5638 Uncharacterized conser 31.8 3.1E+02 0.0068 24.9 7.9 42 97-138 143-189 (622)
256 PF11411 DNA_ligase_IV: DNA li 31.7 39 0.00086 19.1 1.6 16 110-125 19-34 (36)
257 PRK11558 putative ssRNA endonu 31.2 86 0.0019 22.2 3.6 49 100-151 27-76 (97)
258 PF15628 RRM_DME: RRM in Demet 31.1 1.3E+02 0.0028 21.3 4.4 24 194-217 50-77 (103)
259 PTZ00071 40S ribosomal protein 31.1 1.3E+02 0.0029 22.5 4.8 47 205-252 35-86 (132)
260 PF14893 PNMA: PNMA 29.9 58 0.0013 28.7 3.2 54 98-151 16-72 (331)
261 COG0089 RplW Ribosomal protein 29.7 1.5E+02 0.0033 20.8 4.7 36 196-231 22-58 (94)
262 PRK11230 glycolate oxidase sub 29.4 1.9E+02 0.0041 27.1 6.7 62 101-162 190-255 (499)
263 KOG1295 Nonsense-mediated deca 28.8 65 0.0014 28.7 3.3 69 194-263 7-78 (376)
264 PF03439 Spt5-NGN: Early trans 28.5 1E+02 0.0022 20.9 3.7 34 127-164 34-67 (84)
265 PF00276 Ribosomal_L23: Riboso 28.4 83 0.0018 21.8 3.2 51 197-247 22-83 (91)
266 PRK13293 F420-0--gamma-glutamy 28.1 3.1E+02 0.0067 23.0 7.0 74 195-270 116-190 (245)
267 KOG2295 C2H2 Zn-finger protein 28.0 8.3 0.00018 35.8 -2.3 70 99-168 230-300 (648)
268 PRK11901 hypothetical protein; 26.6 4.4E+02 0.0096 23.1 8.1 61 98-163 243-306 (327)
269 PF14893 PNMA: PNMA 25.8 70 0.0015 28.1 3.0 52 193-246 17-71 (331)
270 KOG0156 Cytochrome P450 CYP2 s 25.7 1.5E+02 0.0032 27.7 5.3 59 104-171 36-97 (489)
271 KOG4365 Uncharacterized conser 25.4 10 0.00022 34.2 -2.2 74 195-270 4-77 (572)
272 PRK10905 cell division protein 24.6 1.9E+02 0.0041 25.3 5.2 52 204-258 254-307 (328)
273 PF06919 Phage_T4_Gp30_7: Phag 24.3 2.7E+02 0.0059 19.9 5.9 79 125-216 30-113 (121)
274 PF11061 DUF2862: Protein of u 24.0 1.9E+02 0.004 18.8 3.9 31 115-150 18-51 (64)
275 cd04889 ACT_PDH-BS-like C-term 23.7 1.7E+02 0.0038 17.4 6.1 42 115-158 13-55 (56)
276 PRK10629 EnvZ/OmpR regulon mod 22.5 3.3E+02 0.0072 20.2 7.7 69 102-177 37-109 (127)
277 PRK10905 cell division protein 21.9 2.5E+02 0.0054 24.6 5.4 61 99-162 246-307 (328)
278 COG0030 KsgA Dimethyladenosine 21.6 1.4E+02 0.003 25.3 3.8 30 101-130 96-125 (259)
279 KOG3861 Sensory cilia assembly 21.4 56 0.0012 28.4 1.5 34 99-132 362-395 (438)
280 PF15063 TC1: Thyroid cancer p 21.0 69 0.0015 21.4 1.5 29 99-127 24-52 (79)
281 PF09869 DUF2096: Uncharacteri 21.0 3.6E+02 0.0078 21.2 5.6 47 201-258 118-164 (169)
282 TIGR00387 glcD glycolate oxida 20.3 2.9E+02 0.0063 25.0 6.0 51 111-161 143-197 (413)
283 cd04909 ACT_PDH-BS C-terminal 20.0 2.4E+02 0.0052 17.6 6.2 48 113-161 14-62 (69)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=2.6e-35 Score=256.06 Aligned_cols=169 Identities=23% Similarity=0.341 Sum_probs=154.8
Q ss_pred hccCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecC-CCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEE
Q 024018 95 EEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKV 173 (274)
Q Consensus 95 ~~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v 173 (274)
......++|||+|||+++|+++|+++|+.||+|++|+|+.|. +++++|||||+|.++++|++|++.|+|..+.+++|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 345577899999999999999999999999999999999986 5899999999999999999999999999999999999
Q ss_pred eecccccCCCCCCCCCCCCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHH
Q 024018 174 NYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETA 253 (274)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A 253 (274)
.++++.... ....+|||+|||..+++++|+++|++ ||.|.++.|+.+..+|+++|||||+|.+.++|++|
T Consensus 182 ~~a~p~~~~---------~~~~~lfV~nLp~~vtee~L~~~F~~-fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~A 251 (346)
T TIGR01659 182 SYARPGGES---------IKDTNLYVTNLPRTITDDQLDTIFGK-YGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEA 251 (346)
T ss_pred ecccccccc---------cccceeEEeCCCCcccHHHHHHHHHh-cCCEEEEEEeecCCCCccceEEEEEECCHHHHHHH
Confidence 998764322 12467999999999999999999998 99999999999999999999999999999999999
Q ss_pred HHHhCCceeCC--eEEEEEEee
Q 024018 254 ISAFQGKVIMC--LVIALSYLY 273 (274)
Q Consensus 254 ~~~l~g~~i~g--~~i~v~~a~ 273 (274)
++.||+..+.| +.|+|.||.
T Consensus 252 i~~lng~~~~g~~~~l~V~~a~ 273 (346)
T TIGR01659 252 ISALNNVIPEGGSQPLTVRLAE 273 (346)
T ss_pred HHHhCCCccCCCceeEEEEECC
Confidence 99999999875 789999874
No 2
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=6.7e-34 Score=259.61 Aligned_cols=174 Identities=18% Similarity=0.308 Sum_probs=153.4
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecC-CCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeecc
Q 024018 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (274)
Q Consensus 99 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 177 (274)
..++||||||++.+++++|+++|+.||.|.+|.|+.|+ +|+++|||||+|.+.++|.+|++.|||..++||.|+|.+..
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 45789999999999999999999999999999999986 58999999999999999999999999999999999998654
Q ss_pred cccCCCC--CCCCCCCCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHH
Q 024018 178 IKKKNPF--PPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255 (274)
Q Consensus 178 ~~~~~~~--~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~ 255 (274)
....... ..........++|||+||+..+++++|+++|+. ||.|.++++.+++.+|.++|||||+|++.++|.+|++
T Consensus 186 ~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~-FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~ 264 (612)
T TIGR01645 186 NMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEA-FGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIA 264 (612)
T ss_pred cccccccccccccccccccceEEeecCCCCCCHHHHHHHHhh-cCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHH
Confidence 3221110 001111223478999999999999999999998 9999999999999999999999999999999999999
Q ss_pred HhCCceeCCeEEEEEEee
Q 024018 256 AFQGKVIMCLVIALSYLY 273 (274)
Q Consensus 256 ~l~g~~i~g~~i~v~~a~ 273 (274)
.|||..++|+.|+|.+|.
T Consensus 265 amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 265 SMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred HhCCCeeCCeEEEEEecC
Confidence 999999999999999874
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=1.2e-32 Score=243.22 Aligned_cols=165 Identities=25% Similarity=0.444 Sum_probs=151.8
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecC-CCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeecc
Q 024018 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (274)
Q Consensus 99 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 177 (274)
+.++|||+|||..+++++|+++|+.||+|.+|+|++++ +|+++|||||+|.+.++|.+|++.|+|..+.|+.|+|.++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 46789999999999999999999999999999999987 58999999999999999999999999999999999999987
Q ss_pred cccCCCCCCCCCCCCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHh
Q 024018 178 IKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAF 257 (274)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l 257 (274)
+.... ....+|||+|||..+++++|+++|+. ||.|..+.++.+..+|.++|||||+|++.++|.+|++.|
T Consensus 82 ~~~~~---------~~~~~l~v~~l~~~~~~~~l~~~f~~-~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l 151 (352)
T TIGR01661 82 PSSDS---------IKGANLYVSGLPKTMTQHELESIFSP-FGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTL 151 (352)
T ss_pred ccccc---------cccceEEECCccccCCHHHHHHHHhc-cCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHh
Confidence 65432 12568999999999999999999999 999999999999888899999999999999999999999
Q ss_pred CCceeCC--eEEEEEEee
Q 024018 258 QGKVIMC--LVIALSYLY 273 (274)
Q Consensus 258 ~g~~i~g--~~i~v~~a~ 273 (274)
||..+.| +.|.|.|+.
T Consensus 152 ~g~~~~g~~~~i~v~~a~ 169 (352)
T TIGR01661 152 NGTTPSGCTEPITVKFAN 169 (352)
T ss_pred CCCccCCCceeEEEEECC
Confidence 9999887 678888863
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=1.2e-31 Score=236.98 Aligned_cols=173 Identities=21% Similarity=0.343 Sum_probs=149.8
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecC-CCCceeEEEEEECCHHHHHHHHHHcCCCeecC--cEEEEee
Q 024018 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEG--RTLKVNY 175 (274)
Q Consensus 99 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g--~~i~v~~ 175 (274)
..++|||+|||..+++++|+++|+.||.|..+.++.+. .|.++|||||+|.+.++|.+|++.|+|..+.| ++|.|.+
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~ 167 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKF 167 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 45689999999999999999999999999999998876 58899999999999999999999999999877 5788888
Q ss_pred cccccCCCCC--------------C-------------------------------------------------------
Q 024018 176 AKIKKKNPFP--------------P------------------------------------------------------- 186 (274)
Q Consensus 176 ~~~~~~~~~~--------------~------------------------------------------------------- 186 (274)
+......... .
T Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (352)
T TIGR01661 168 ANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPP 247 (352)
T ss_pred CCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCc
Confidence 7543210000 0
Q ss_pred --------------CCCCCCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHH
Q 024018 187 --------------VQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAET 252 (274)
Q Consensus 187 --------------~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~ 252 (274)
.......+.+|||+|||..+++++|+++|++ ||.|.+++|++|..+|.++|||||+|.+.++|.+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~-fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~ 326 (352)
T TIGR01661 248 ATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGP-FGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAM 326 (352)
T ss_pred cccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHh-CCCeEEEEEeEcCCCCCccceEEEEECCHHHHHH
Confidence 0000112336999999999999999999999 9999999999999999999999999999999999
Q ss_pred HHHHhCCceeCCeEEEEEEe
Q 024018 253 AISAFQGKVIMCLVIALSYL 272 (274)
Q Consensus 253 A~~~l~g~~i~g~~i~v~~a 272 (274)
|+.+|||..++||.|+|+|+
T Consensus 327 Ai~~lnG~~~~gr~i~V~~~ 346 (352)
T TIGR01661 327 AILSLNGYTLGNRVLQVSFK 346 (352)
T ss_pred HHHHhCCCEECCeEEEEEEc
Confidence 99999999999999999996
No 5
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-32 Score=220.06 Aligned_cols=167 Identities=19% Similarity=0.279 Sum_probs=151.8
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecC-CCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeeccc
Q 024018 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178 (274)
Q Consensus 100 ~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 178 (274)
..-+|||.|...++.++|++.|..||+|.+.++++|. ++++||||||.|-+.++|+.||..|||..|++|.|+-+|+.+
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 5679999999999999999999999999999999997 599999999999999999999999999999999999999998
Q ss_pred ccCCCCCC-------CCCCCCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHH
Q 024018 179 KKKNPFPP-------VQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAE 251 (274)
Q Consensus 179 ~~~~~~~~-------~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~ 251 (274)
+....... ..-..+..++|||+|++..++|++|++.|++ ||.|.+|+|+++ +||+||+|++.|.|.
T Consensus 142 Kp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~-fG~I~EVRvFk~------qGYaFVrF~tkEaAa 214 (321)
T KOG0148|consen 142 KPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSP-FGPIQEVRVFKD------QGYAFVRFETKEAAA 214 (321)
T ss_pred CccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhccc-CCcceEEEEecc------cceEEEEecchhhHH
Confidence 86432221 1123445789999999999999999999999 999999999976 689999999999999
Q ss_pred HHHHHhCCceeCCeEEEEEEee
Q 024018 252 TAISAFQGKVIMCLVIALSYLY 273 (274)
Q Consensus 252 ~A~~~l~g~~i~g~~i~v~~a~ 273 (274)
+||..+||.+|+|..|+++|-+
T Consensus 215 hAIv~mNntei~G~~VkCsWGK 236 (321)
T KOG0148|consen 215 HAIVQMNNTEIGGQLVRCSWGK 236 (321)
T ss_pred HHHHHhcCceeCceEEEEeccc
Confidence 9999999999999999999964
No 6
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=7.3e-32 Score=246.10 Aligned_cols=176 Identities=20% Similarity=0.342 Sum_probs=156.1
Q ss_pred ccCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCC-CCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEe
Q 024018 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174 (274)
Q Consensus 96 ~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~-~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 174 (274)
.+...++|||+|||..+++++|+++|+.||.|.+|.|+.++. |+++|||||+|.+.++|.+|+. |+|..+.|+.|.|.
T Consensus 85 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~ 163 (457)
T TIGR01622 85 AERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQ 163 (457)
T ss_pred cccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEe
Confidence 355678999999999999999999999999999999999874 8999999999999999999998 89999999999999
Q ss_pred ecccccCCCCC---CCCCCCCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHH
Q 024018 175 YAKIKKKNPFP---PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAE 251 (274)
Q Consensus 175 ~~~~~~~~~~~---~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~ 251 (274)
++......... ..........+|||+|||..+++++|+++|+. ||.|..|.++.+..+|.++|||||+|.+.++|.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~-~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~ 242 (457)
T TIGR01622 164 SSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEP-FGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAK 242 (457)
T ss_pred ecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHh-cCCeEEEEEEEcCCCCccceEEEEEECCHHHHH
Confidence 87654332211 11111223688999999999999999999998 999999999999999999999999999999999
Q ss_pred HHHHHhCCceeCCeEEEEEEee
Q 024018 252 TAISAFQGKVIMCLVIALSYLY 273 (274)
Q Consensus 252 ~A~~~l~g~~i~g~~i~v~~a~ 273 (274)
+|+..|+|..|.|+.|.|.||.
T Consensus 243 ~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 243 EALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred HHHHhcCCcEECCEEEEEEEcc
Confidence 9999999999999999999963
No 7
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.97 E-value=5.1e-30 Score=239.38 Aligned_cols=174 Identities=22% Similarity=0.383 Sum_probs=155.2
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeec----CcEEEE
Q 024018 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFE----GRTLKV 173 (274)
Q Consensus 98 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~----g~~i~v 173 (274)
...++|||+|||.++|+++|+++|+.||.|.++.+..+.+|.++|||||+|.+.++|.+|++.|+|..+. |+.+.|
T Consensus 176 ~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v 255 (562)
T TIGR01628 176 KKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYV 255 (562)
T ss_pred cCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEe
Confidence 3457799999999999999999999999999999999988999999999999999999999999999999 999999
Q ss_pred eecccccCCCCC---------CCCCCCCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEE
Q 024018 174 NYAKIKKKNPFP---------PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSF 244 (274)
Q Consensus 174 ~~~~~~~~~~~~---------~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f 244 (274)
.++..+.+.... ..........+|||+||+..+++++|+++|+. ||.|.++.++.+ .+|.++|||||+|
T Consensus 256 ~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~-~G~i~~~~i~~d-~~g~~~g~gfV~f 333 (562)
T TIGR01628 256 GRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSE-CGEITSAKVMLD-EKGVSRGFGFVCF 333 (562)
T ss_pred ecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHh-cCCeEEEEEEEC-CCCCcCCeEEEEe
Confidence 988766443110 01112234578999999999999999999999 999999999998 5689999999999
Q ss_pred cCHHHHHHHHHHhCCceeCCeEEEEEEee
Q 024018 245 KSKKVAETAISAFQGKVIMCLVIALSYLY 273 (274)
Q Consensus 245 ~~~~~a~~A~~~l~g~~i~g~~i~v~~a~ 273 (274)
.+.++|.+|+..|||..++|+.|.|.||.
T Consensus 334 ~~~~~A~~A~~~~~g~~~~gk~l~V~~a~ 362 (562)
T TIGR01628 334 SNPEEANRAVTEMHGRMLGGKPLYVALAQ 362 (562)
T ss_pred CCHHHHHHHHHHhcCCeeCCceeEEEecc
Confidence 99999999999999999999999999985
No 8
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.97 E-value=6.9e-31 Score=199.55 Aligned_cols=167 Identities=24% Similarity=0.390 Sum_probs=152.2
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCC-CCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeec
Q 024018 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (274)
Q Consensus 98 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~-~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 176 (274)
....+||||||+..++++.|+++|-+.|+|.++.+.+|+- ..++|||||+|.++++|+-|++.||+.+|.||+|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 3567899999999999999999999999999999999984 779999999999999999999999999999999999998
Q ss_pred ccccCCCCCCCCCCCCCccceEEecCCccccHHHHHHHHhhcCCceEEE-EEEEcCCCCCCccEEEEEEcCHHHHHHHHH
Q 024018 177 KIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSA-EVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255 (274)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~-~i~~~~~~g~~~g~afV~f~~~~~a~~A~~ 255 (274)
...+.. ...+.++||+||...++|..|.+.|+. ||.+... .++++++||.++|+|||.|.+.+.+.+|++
T Consensus 87 s~~~~n--------l~vganlfvgNLd~~vDe~~L~dtFsa-fG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~ 157 (203)
T KOG0131|consen 87 SAHQKN--------LDVGANLFVGNLDPEVDEKLLYDTFSA-FGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIG 157 (203)
T ss_pred cccccc--------ccccccccccccCcchhHHHHHHHHHh-ccccccCCcccccccCCCCCCCeEEechhHHHHHHHHH
Confidence 833222 222578999999999999999999998 8987663 688999999999999999999999999999
Q ss_pred HhCCceeCCeEEEEEEee
Q 024018 256 AFQGKVIMCLVIALSYLY 273 (274)
Q Consensus 256 ~l~g~~i~g~~i~v~~a~ 273 (274)
++||..+.+++|+|+||+
T Consensus 158 s~ngq~l~nr~itv~ya~ 175 (203)
T KOG0131|consen 158 SMNGQYLCNRPITVSYAF 175 (203)
T ss_pred HhccchhcCCceEEEEEE
Confidence 999999999999999986
No 9
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=2.4e-30 Score=206.76 Aligned_cols=167 Identities=25% Similarity=0.422 Sum_probs=156.0
Q ss_pred ccCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecC-CCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEe
Q 024018 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174 (274)
Q Consensus 96 ~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 174 (274)
.++.++.|.|.-||.++|++||+.+|...|+|+++++++|+ +|.+-||+||.|.+++||++|+..|||..+..+.|+|.
T Consensus 37 t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVS 116 (360)
T KOG0145|consen 37 TDESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVS 116 (360)
T ss_pred cCcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEE
Confidence 35567789999999999999999999999999999999998 59999999999999999999999999999999999999
Q ss_pred ecccccCCCCCCCCCCCCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHH
Q 024018 175 YAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAI 254 (274)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~ 254 (274)
++++..+.-. ..+|||.+||..++..||.++|++ ||.|.--+|..|..+|.++|.+||+|+.+.+|+.|+
T Consensus 117 yARPSs~~Ik---------~aNLYvSGlPktMtqkelE~iFs~-fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AI 186 (360)
T KOG0145|consen 117 YARPSSDSIK---------DANLYVSGLPKTMTQKELEQIFSP-FGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAI 186 (360)
T ss_pred eccCChhhhc---------ccceEEecCCccchHHHHHHHHHH-hhhhhhhhhhhhcccceecceeEEEecchhHHHHHH
Confidence 9998765432 578999999999999999999999 999999999999999999999999999999999999
Q ss_pred HHhCCceeCC--eEEEEEEe
Q 024018 255 SAFQGKVIMC--LVIALSYL 272 (274)
Q Consensus 255 ~~l~g~~i~g--~~i~v~~a 272 (274)
+.|||..--| .+|.|+||
T Consensus 187 k~lNG~~P~g~tepItVKFa 206 (360)
T KOG0145|consen 187 KGLNGQKPSGCTEPITVKFA 206 (360)
T ss_pred HhccCCCCCCCCCCeEEEec
Confidence 9999998876 58999987
No 10
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.97 E-value=9.1e-30 Score=237.69 Aligned_cols=161 Identities=22% Similarity=0.364 Sum_probs=146.6
Q ss_pred eEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCC-CCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeeccccc
Q 024018 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180 (274)
Q Consensus 102 ~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~-~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~ 180 (274)
+|||||||+++||++|+++|+.||.|.+|++++|.. ++++|||||+|.+.++|++|++.+++..+.|+.|+|.|+....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 599999999999999999999999999999999985 8999999999999999999999999999999999999986432
Q ss_pred CCCCCCCCCCCCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCc
Q 024018 181 KNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260 (274)
Q Consensus 181 ~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~ 260 (274)
... .....+|||+|||.++++++|+++|+. ||.|.+|.+..+. +|+++|||||+|++.++|.+|++.|||.
T Consensus 82 ~~~-------~~~~~~vfV~nLp~~~~~~~L~~~F~~-~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~ 152 (562)
T TIGR01628 82 SLR-------RSGVGNIFVKNLDKSVDNKALFDTFSK-FGNILSCKVATDE-NGKSRGYGFVHFEKEESAKAAIQKVNGM 152 (562)
T ss_pred ccc-------ccCCCceEEcCCCccCCHHHHHHHHHh-cCCcceeEeeecC-CCCcccEEEEEECCHHHHHHHHHHhccc
Confidence 211 112467999999999999999999998 9999999999875 5789999999999999999999999999
Q ss_pred eeCCeEEEEEE
Q 024018 261 VIMCLVIALSY 271 (274)
Q Consensus 261 ~i~g~~i~v~~ 271 (274)
.+.|+.|.|..
T Consensus 153 ~~~~~~i~v~~ 163 (562)
T TIGR01628 153 LLNDKEVYVGR 163 (562)
T ss_pred EecCceEEEec
Confidence 99999999864
No 11
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=3.3e-30 Score=218.89 Aligned_cols=166 Identities=26% Similarity=0.426 Sum_probs=149.4
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecC-CCCceeEEEEEECCHHHHHHHHHHcCC-CeecC--cEEE
Q 024018 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLES-YEFEG--RTLK 172 (274)
Q Consensus 97 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~-~~~~g--~~i~ 172 (274)
+.+.-++|||-+|..++|.||+++|++||.|.+|.+++|+ +|.++|+|||.|.+.++|.+|+..|+. +.|-| .+|.
T Consensus 31 d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 31 DGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred CchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCccee
Confidence 4556679999999999999999999999999999999998 599999999999999999999999987 45555 4899
Q ss_pred EeecccccCCCCCCCCCCCCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHH
Q 024018 173 VNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAET 252 (274)
Q Consensus 173 v~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~ 252 (274)
|+++..+.++. ...++|||+-|+..++|.+++++|.+ ||.|++|.|.+|++ |.+||||||.|.+++.|..
T Consensus 111 vk~Ad~E~er~--------~~e~KLFvg~lsK~~te~evr~iFs~-fG~Ied~~ilrd~~-~~sRGcaFV~fstke~A~~ 180 (510)
T KOG0144|consen 111 VKYADGERERI--------VEERKLFVGMLSKQCTENEVREIFSR-FGHIEDCYILRDPD-GLSRGCAFVKFSTKEMAVA 180 (510)
T ss_pred ecccchhhhcc--------ccchhhhhhhccccccHHHHHHHHHh-hCccchhhheeccc-ccccceeEEEEehHHHHHH
Confidence 99998776653 23688999999999999999999999 99999999999987 7999999999999999999
Q ss_pred HHHHhCCce-eCC--eEEEEEEe
Q 024018 253 AISAFQGKV-IMC--LVIALSYL 272 (274)
Q Consensus 253 A~~~l~g~~-i~g--~~i~v~~a 272 (274)
|+++|||.. ++| .+|.|+||
T Consensus 181 Aika~ng~~tmeGcs~PLVVkFA 203 (510)
T KOG0144|consen 181 AIKALNGTQTMEGCSQPLVVKFA 203 (510)
T ss_pred HHHhhccceeeccCCCceEEEec
Confidence 999999965 555 58999997
No 12
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.97 E-value=5.2e-29 Score=227.31 Aligned_cols=166 Identities=23% Similarity=0.325 Sum_probs=138.8
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeec-CcEEEEeecc
Q 024018 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFE-GRTLKVNYAK 177 (274)
Q Consensus 99 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~-g~~i~v~~~~ 177 (274)
..++|||+|||++++|++|+++|++||.|.+++|++|.+|+++|||||+|.+.++|++||+.||+..+. |+.|.|.++.
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~ 136 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISV 136 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccc
Confidence 458899999999999999999999999999999999988999999999999999999999999998885 6666554432
Q ss_pred cccC------------------------------------CCCCC-----------------------------------
Q 024018 178 IKKK------------------------------------NPFPP----------------------------------- 186 (274)
Q Consensus 178 ~~~~------------------------------------~~~~~----------------------------------- 186 (274)
.... .....
T Consensus 137 ~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~V 216 (578)
T TIGR01648 137 DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAV 216 (578)
T ss_pred cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEE
Confidence 1100 00000
Q ss_pred ---------CCCCCCCccceEEecCCccccHHHHHHHHhhcC--CceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHH
Q 024018 187 ---------VQPKPFATFNLFIANLSFEARAKDLREFFISEG--WDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255 (274)
Q Consensus 187 ---------~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~--G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~ 255 (274)
........++|||+||+..+++++|+++|+. | |.|++|.++ ++||||+|++.++|.+|++
T Consensus 217 dwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~-f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kAi~ 287 (578)
T TIGR01648 217 DWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSE-FKPGKVERVKKI--------RDYAFVHFEDREDAVKAMD 287 (578)
T ss_pred EeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHh-cCCCceEEEEee--------cCeEEEEeCCHHHHHHHHH
Confidence 0000112367999999999999999999999 9 999999775 4699999999999999999
Q ss_pred HhCCceeCCeEEEEEEee
Q 024018 256 AFQGKVIMCLVIALSYLY 273 (274)
Q Consensus 256 ~l~g~~i~g~~i~v~~a~ 273 (274)
.|||..|+|+.|+|+||+
T Consensus 288 ~lnG~~i~Gr~I~V~~Ak 305 (578)
T TIGR01648 288 ELNGKELEGSEIEVTLAK 305 (578)
T ss_pred HhCCCEECCEEEEEEEcc
Confidence 999999999999999985
No 13
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.96 E-value=1.1e-28 Score=228.09 Aligned_cols=172 Identities=20% Similarity=0.252 Sum_probs=143.9
Q ss_pred hccCCCCeEEEeCCCCCCCHHHHHHHHhcc------------CceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcC
Q 024018 95 EEEYSKTRLVAQNVPWTSTHEDIRALFEQH------------GTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLE 162 (274)
Q Consensus 95 ~~~~~~~~l~v~nLp~~~t~~~L~~~f~~~------------G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~ 162 (274)
......++|||||||+.+|+++|+++|..+ +.|..+.+. ..+|||||+|.+.++|.+||. |+
T Consensus 170 ~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~-----~~kg~afVeF~~~e~A~~Al~-l~ 243 (509)
T TIGR01642 170 QATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN-----KEKNFAFLEFRTVEEATFAMA-LD 243 (509)
T ss_pred cCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC-----CCCCEEEEEeCCHHHHhhhhc-CC
Confidence 345567899999999999999999999975 345555554 348999999999999999996 99
Q ss_pred CCeecCcEEEEeecccccCCCCC--------------------CCCCCCCCccceEEecCCccccHHHHHHHHhhcCCce
Q 024018 163 SYEFEGRTLKVNYAKIKKKNPFP--------------------PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDV 222 (274)
Q Consensus 163 ~~~~~g~~i~v~~~~~~~~~~~~--------------------~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v 222 (274)
|..|.|+.|+|.........+.. ..........+|||+|||..+++++|+++|+. ||.|
T Consensus 244 g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~-~G~i 322 (509)
T TIGR01642 244 SIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLES-FGDL 322 (509)
T ss_pred CeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCe
Confidence 99999999999765433211000 00011233578999999999999999999998 9999
Q ss_pred EEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEee
Q 024018 223 VSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSYLY 273 (274)
Q Consensus 223 ~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a~ 273 (274)
..+.++.+..+|.++|||||+|.+.++|..|+..|+|..|+|+.|.|.+|.
T Consensus 323 ~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 323 KAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred eEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 999999999899999999999999999999999999999999999999974
No 14
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.96 E-value=2.2e-28 Score=223.55 Aligned_cols=165 Identities=17% Similarity=0.182 Sum_probs=139.7
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHc--CCCeecCcEEEEeecc
Q 024018 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNL--ESYEFEGRTLKVNYAK 177 (274)
Q Consensus 100 ~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l--~~~~~~g~~i~v~~~~ 177 (274)
+++|||+|||+.+++++|+++|+.||.|.++.++++ +|+|||+|.+.++|.+|++.+ ++..++|+.|+|.|+.
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~-----k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~ 76 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG-----KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYST 76 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC-----CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecC
Confidence 578999999999999999999999999999999864 789999999999999999864 7899999999999997
Q ss_pred cccCCCCCCC---CCCCCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHH
Q 024018 178 IKKKNPFPPV---QPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAI 254 (274)
Q Consensus 178 ~~~~~~~~~~---~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~ 254 (274)
.+........ ........+|+|+||++.+++++|+++|+. ||.|.+|.++++.. +++|||+|.+.++|.+|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~-~G~V~~v~i~~~~~----~~~afVef~~~~~A~~A~ 151 (481)
T TIGR01649 77 SQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNP-YGKVLRIVTFTKNN----VFQALVEFESVNSAQHAK 151 (481)
T ss_pred CcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhc-cCCEEEEEEEecCC----ceEEEEEECCHHHHHHHH
Confidence 6532211110 011112347999999999999999999998 99999999887642 478999999999999999
Q ss_pred HHhCCceeCC--eEEEEEEeeC
Q 024018 255 SAFQGKVIMC--LVIALSYLYL 274 (274)
Q Consensus 255 ~~l~g~~i~g--~~i~v~~a~l 274 (274)
+.|||..|.| +.|+|.|++.
T Consensus 152 ~~Lng~~i~~~~~~l~v~~sk~ 173 (481)
T TIGR01649 152 AALNGADIYNGCCTLKIEYAKP 173 (481)
T ss_pred HHhcCCcccCCceEEEEEEecC
Confidence 9999999964 6999999873
No 15
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.96 E-value=4.9e-28 Score=221.27 Aligned_cols=169 Identities=19% Similarity=0.247 Sum_probs=142.9
Q ss_pred CCCCeEEEeCCCC-CCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeec
Q 024018 98 YSKTRLVAQNVPW-TSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (274)
Q Consensus 98 ~~~~~l~v~nLp~-~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 176 (274)
...++|||+||++ .+|+++|+++|+.||.|..|++++++ +|+|||+|.+.++|.+|++.|||..|.|+.|+|.++
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s 348 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPS 348 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 3567999999998 69999999999999999999998763 689999999999999999999999999999999998
Q ss_pred ccccCCCCCC----------------------------CCCCCCCccceEEecCCccccHHHHHHHHhhcCCc--eEEEE
Q 024018 177 KIKKKNPFPP----------------------------VQPKPFATFNLFIANLSFEARAKDLREFFISEGWD--VVSAE 226 (274)
Q Consensus 177 ~~~~~~~~~~----------------------------~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~--v~~~~ 226 (274)
+......... ......++.+|||+|||..+++++|+++|+. ||. |..++
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~-~G~~~i~~ik 427 (481)
T TIGR01649 349 KQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAE-NGVHKVKKFK 427 (481)
T ss_pred ccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHh-cCCccceEEE
Confidence 6542111000 0001235678999999999999999999999 897 88887
Q ss_pred EEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeE------EEEEEee
Q 024018 227 VIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLV------IALSYLY 273 (274)
Q Consensus 227 i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~------i~v~~a~ 273 (274)
+..... ..+|+|||+|++.++|.+|+..|||+.|+|+. |+|+|++
T Consensus 428 ~~~~~~--~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~ 478 (481)
T TIGR01649 428 FFPKDN--ERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFST 478 (481)
T ss_pred EecCCC--CcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEecc
Confidence 764432 35899999999999999999999999999985 9999985
No 16
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.96 E-value=2.4e-27 Score=219.15 Aligned_cols=174 Identities=19% Similarity=0.239 Sum_probs=146.4
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecC-CCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeec
Q 024018 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (274)
Q Consensus 98 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 176 (274)
...++|||+|||..+++++|+++|+.||.|..+.++.+. +|.++|||||+|.+.++|.+|+..|+|..++|+.|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 356789999999999999999999999999999999886 5899999999999999999999999999999999999998
Q ss_pred ccccCCCCCC-------------------CCCCCCCccceEEecCCcc----------ccHHHHHHHHhhcCCceEEEEE
Q 024018 177 KIKKKNPFPP-------------------VQPKPFATFNLFIANLSFE----------ARAKDLREFFISEGWDVVSAEV 227 (274)
Q Consensus 177 ~~~~~~~~~~-------------------~~~~~~~~~~l~V~nlp~~----------~~~~~l~~~f~~~~G~v~~~~i 227 (274)
.......... ......++.+|+|.|+... ...++|++.|+. ||.|..|.|
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~-~G~v~~v~i 451 (509)
T TIGR01642 373 CVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSK-YGPLINIVI 451 (509)
T ss_pred ccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHh-cCCeeEEEe
Confidence 6543211100 0111235678999999632 134689999998 999999999
Q ss_pred EEcC---CCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 024018 228 IFHD---NPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSYL 272 (274)
Q Consensus 228 ~~~~---~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a 272 (274)
+++. .++.+.|+|||+|.+.++|.+|+.+|||.+|+|+.|.|.|.
T Consensus 452 ~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~ 499 (509)
T TIGR01642 452 PRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFY 499 (509)
T ss_pred eccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 8753 34567899999999999999999999999999999999985
No 17
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=1.2e-27 Score=204.34 Aligned_cols=167 Identities=23% Similarity=0.325 Sum_probs=142.5
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecC-CCCceeEEEEEECCHHHHHHHHHHcCCCee-cCcEEEEee
Q 024018 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEF-EGRTLKVNY 175 (274)
Q Consensus 98 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~-~g~~i~v~~ 175 (274)
...+-||||.||.++.|++|.-+|++.|+|-+++|++|+ +|.++|||||+|.+.++|.+|++.||+..| .|+.|.|..
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 456789999999999999999999999999999999996 699999999999999999999999999988 488888877
Q ss_pred cccccCC------------------------------------CCCC---------------------------------
Q 024018 176 AKIKKKN------------------------------------PFPP--------------------------------- 186 (274)
Q Consensus 176 ~~~~~~~------------------------------------~~~~--------------------------------- 186 (274)
+..+... ..++
T Consensus 161 Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~ 240 (506)
T KOG0117|consen 161 SVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAI 240 (506)
T ss_pred eeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcc
Confidence 7544110 0000
Q ss_pred ----C-CCCC------CCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHH
Q 024018 187 ----V-QPKP------FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255 (274)
Q Consensus 187 ----~-~~~~------~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~ 255 (274)
. .... ..-..|||+||+..+|++.|++.|++ ||.|.+|..+ +.||||.|.+.++|.+|++
T Consensus 241 tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~-~G~veRVkk~--------rDYaFVHf~eR~davkAm~ 311 (506)
T KOG0117|consen 241 TVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNE-FGKVERVKKP--------RDYAFVHFAEREDAVKAMK 311 (506)
T ss_pred eeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHh-ccceEEeecc--------cceeEEeecchHHHHHHHH
Confidence 0 0000 01157999999999999999999999 8999999776 4499999999999999999
Q ss_pred HhCCceeCCeEEEEEEee
Q 024018 256 AFQGKVIMCLVIALSYLY 273 (274)
Q Consensus 256 ~l~g~~i~g~~i~v~~a~ 273 (274)
.+||+.|+|..|.|.+|+
T Consensus 312 ~~ngkeldG~~iEvtLAK 329 (506)
T KOG0117|consen 312 ETNGKELDGSPIEVTLAK 329 (506)
T ss_pred HhcCceecCceEEEEecC
Confidence 999999999999999986
No 18
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=7.8e-28 Score=192.44 Aligned_cols=177 Identities=21% Similarity=0.336 Sum_probs=155.1
Q ss_pred hccCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecC-CCCceeEEEEEECCHHHHHHHHHHcCCCeecCc--EE
Q 024018 95 EEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGR--TL 171 (274)
Q Consensus 95 ~~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~--~i 171 (274)
.+......|||.+||..+|..||..+|++||.|..-+|..|. +|.++|.|||.|+..++|+.||+.|||..--|. +|
T Consensus 122 s~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepI 201 (360)
T KOG0145|consen 122 SDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPI 201 (360)
T ss_pred hhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCe
Confidence 345567889999999999999999999999998877777776 599999999999999999999999999888775 89
Q ss_pred EEeecccccCCCCC------------------------------------------------------CCCCCCCCccce
Q 024018 172 KVNYAKIKKKNPFP------------------------------------------------------PVQPKPFATFNL 197 (274)
Q Consensus 172 ~v~~~~~~~~~~~~------------------------------------------------------~~~~~~~~~~~l 197 (274)
.|+++......... ........+++|
T Consensus 202 tVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ci 281 (360)
T KOG0145|consen 202 TVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCI 281 (360)
T ss_pred EEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEE
Confidence 99998754221100 011233446899
Q ss_pred EEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 024018 198 FIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSYL 272 (274)
Q Consensus 198 ~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a 272 (274)
||.||..+++|.-|+++|.+ ||.|..|+|++|..+..++||+||.+.+.++|..|+..|||..+++|.|.|+|.
T Consensus 282 FvYNLspd~de~~LWQlFgp-FGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFK 355 (360)
T KOG0145|consen 282 FVYNLSPDADESILWQLFGP-FGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFK 355 (360)
T ss_pred EEEecCCCchHhHHHHHhCc-ccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEe
Confidence 99999999999999999999 999999999999999999999999999999999999999999999999999984
No 19
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=1.1e-27 Score=208.94 Aligned_cols=171 Identities=27% Similarity=0.434 Sum_probs=152.4
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCC-CCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeeccc
Q 024018 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178 (274)
Q Consensus 100 ~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~-~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 178 (274)
..+|||++||+.++.++|.++|+.+|+|..+.++.+.. +.++|||||+|.-.+++.+|+....+..++||.|+|..+..
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 37899999999999999999999999999999998875 68999999999999999999999999999999999999987
Q ss_pred ccCCCCCC-----------------CCCCCCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEE
Q 024018 179 KKKNPFPP-----------------VQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGF 241 (274)
Q Consensus 179 ~~~~~~~~-----------------~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~af 241 (274)
+....... ......+...|.|+|||+.+.+.+|+.+|+. ||.|.+|.|++..+++.+ ||||
T Consensus 85 R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~-~G~V~Ei~IP~k~dgklc-GFaF 162 (678)
T KOG0127|consen 85 RARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSN-FGKVVEIVIPRKKDGKLC-GFAF 162 (678)
T ss_pred cccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhh-cceEEEEEcccCCCCCcc-ceEE
Confidence 64432100 0111233678999999999999999999999 999999999988876665 9999
Q ss_pred EEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 024018 242 VSFKSKKVAETAISAFQGKVIMCLVIALSYL 272 (274)
Q Consensus 242 V~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a 272 (274)
|.|.+..+|..|++.+||..|+||+|-|.||
T Consensus 163 V~fk~~~dA~~Al~~~N~~~i~gR~VAVDWA 193 (678)
T KOG0127|consen 163 VQFKEKKDAEKALEFFNGNKIDGRPVAVDWA 193 (678)
T ss_pred EEEeeHHHHHHHHHhccCceecCceeEEeee
Confidence 9999999999999999999999999999998
No 20
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=9.1e-27 Score=203.16 Aligned_cols=172 Identities=24% Similarity=0.404 Sum_probs=150.2
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeecccc
Q 024018 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179 (274)
Q Consensus 100 ~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 179 (274)
.-+|.|+|||+.+.+.+|+.+|+.||.|..|.|++..+|+-.|||||.|....+|.+|++.+||..|+||+|-|.||-.+
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~K 196 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDK 196 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccc
Confidence 67799999999999999999999999999999998888888899999999999999999999999999999999999765
Q ss_pred cCCCC-----------------------------------------C--C------------------------------
Q 024018 180 KKNPF-----------------------------------------P--P------------------------------ 186 (274)
Q Consensus 180 ~~~~~-----------------------------------------~--~------------------------------ 186 (274)
..-.. . .
T Consensus 197 d~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~ 276 (678)
T KOG0127|consen 197 DTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKES 276 (678)
T ss_pred ccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCcc
Confidence 21000 0 0
Q ss_pred ---C-----CCCCCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHh-
Q 024018 187 ---V-----QPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAF- 257 (274)
Q Consensus 187 ---~-----~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l- 257 (274)
. .....-+.+|||+|||+++++++|+..|.. ||.|.++.++.++.||+++|.|||.|.+..+|+.||++-
T Consensus 277 ~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fsk-FG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~As 355 (678)
T KOG0127|consen 277 DKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSK-FGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAAS 355 (678)
T ss_pred cchhccccccccccccceEEEecCCccccHHHHHHHHHh-hccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcC
Confidence 0 001112378999999999999999999998 999999999999999999999999999999999999976
Q ss_pred ----CC-ceeCCeEEEEEEe
Q 024018 258 ----QG-KVIMCLVIALSYL 272 (274)
Q Consensus 258 ----~g-~~i~g~~i~v~~a 272 (274)
.| ..++||.|.|..|
T Consensus 356 pa~e~g~~ll~GR~Lkv~~A 375 (678)
T KOG0127|consen 356 PASEDGSVLLDGRLLKVTLA 375 (678)
T ss_pred ccCCCceEEEeccEEeeeec
Confidence 24 6688999999876
No 21
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.94 E-value=8.9e-25 Score=199.52 Aligned_cols=168 Identities=26% Similarity=0.360 Sum_probs=140.4
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCC-CCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeeccc
Q 024018 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178 (274)
Q Consensus 100 ~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~-~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 178 (274)
.++|||+|||..+++++|+++|+.||.|..|.+..+.. |.++|||||+|.+.++|.+|+..|+|..+.|+.|.|.++..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 68899999999999999999999999999999998875 69999999999999999999999999999999999999642
Q ss_pred ccCCC----------------------------------C---------CC-----------------------------
Q 024018 179 KKKNP----------------------------------F---------PP----------------------------- 186 (274)
Q Consensus 179 ~~~~~----------------------------------~---------~~----------------------------- 186 (274)
..... . ..
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (457)
T TIGR01622 266 STYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALA 345 (457)
T ss_pred CCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccc
Confidence 11000 0 00
Q ss_pred ---------CCCCCCCccceEEecCCcccc----------HHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCH
Q 024018 187 ---------VQPKPFATFNLFIANLSFEAR----------AKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSK 247 (274)
Q Consensus 187 ---------~~~~~~~~~~l~V~nlp~~~~----------~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~ 247 (274)
......++.+|+|.||-...+ .++|++.|++ ||.|..+.|... .+.|++||+|.+.
T Consensus 346 ~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k-~G~v~~v~v~~~----~~~G~~fV~F~~~ 420 (457)
T TIGR01622 346 IMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSK-YGGVVHIYVDTK----NSAGKIYLKFSSV 420 (457)
T ss_pred cccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHh-cCCeeEEEEeCC----CCceeEEEEECCH
Confidence 000123457889999844333 4689999998 999999988633 4579999999999
Q ss_pred HHHHHHHHHhCCceeCCeEEEEEEe
Q 024018 248 KVAETAISAFQGKVIMCLVIALSYL 272 (274)
Q Consensus 248 ~~a~~A~~~l~g~~i~g~~i~v~~a 272 (274)
++|.+|++.|||.+++|+.|.+.|.
T Consensus 421 e~A~~A~~~lnGr~f~gr~i~~~~~ 445 (457)
T TIGR01622 421 DAALAAFQALNGRYFGGKMITAAFV 445 (457)
T ss_pred HHHHHHHHHhcCcccCCeEEEEEEE
Confidence 9999999999999999999999986
No 22
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=1.6e-26 Score=192.88 Aligned_cols=169 Identities=20% Similarity=0.347 Sum_probs=148.3
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecC-CCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeeccc
Q 024018 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178 (274)
Q Consensus 100 ~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 178 (274)
-++||||.+.+.+.|+.|+..|..||+|.+|.|-+|. +++++|||||+|+-+|.|..|++.|||..++||.|+|..-..
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 3679999999999999999999999999999999997 699999999999999999999999999999999999984322
Q ss_pred ccCCCCCC----CCCCCCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHH
Q 024018 179 KKKNPFPP----VQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAI 254 (274)
Q Consensus 179 ~~~~~~~~----~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~ 254 (274)
.....+ .+.....-+++||..+..+++|+||+.+|+. ||.|.+|.+.+++..+..+||+||+|.+..+-..|+
T Consensus 193 --mpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEA-FG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAi 269 (544)
T KOG0124|consen 193 --MPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEA-FGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAI 269 (544)
T ss_pred --CcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHh-hcceeeEEeeccCCCCCccceeeEEeccccchHHHh
Confidence 111100 0011112367999999999999999999998 999999999999988899999999999999999999
Q ss_pred HHhCCceeCCeEEEEEE
Q 024018 255 SAFQGKVIMCLVIALSY 271 (274)
Q Consensus 255 ~~l~g~~i~g~~i~v~~ 271 (274)
..||-+.++|+.|+|--
T Consensus 270 asMNlFDLGGQyLRVGk 286 (544)
T KOG0124|consen 270 ASMNLFDLGGQYLRVGK 286 (544)
T ss_pred hhcchhhcccceEeccc
Confidence 99999999999999864
No 23
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.93 E-value=4.8e-26 Score=184.84 Aligned_cols=145 Identities=26% Similarity=0.441 Sum_probs=135.4
Q ss_pred CeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeeccccc
Q 024018 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180 (274)
Q Consensus 101 ~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~ 180 (274)
-+|||||||..+++.+|+.+|++||+|.++.|+ |.||||-.++...|+.||+.|+|.+|+|..|.|+-++.+.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv-------KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs 75 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIV-------KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS 75 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeee-------cccceEEeecccccHHHHhhcccceecceEEEEEeccccC
Confidence 369999999999999999999999999999999 6699999999999999999999999999999999998773
Q ss_pred CCCCCCCCCCCCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCc
Q 024018 181 KNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260 (274)
Q Consensus 181 ~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~ 260 (274)
+. +.+|+|+|+...++-+|++..|++ ||.|.++.|+ ++|+||.|+..++|..|++.|+|+
T Consensus 76 k~-----------stkl~vgNis~tctn~ElRa~fe~-ygpviecdiv--------kdy~fvh~d~~eda~~air~l~~~ 135 (346)
T KOG0109|consen 76 KA-----------STKLHVGNISPTCTNQELRAKFEK-YGPVIECDIV--------KDYAFVHFDRAEDAVEAIRGLDNT 135 (346)
T ss_pred CC-----------ccccccCCCCccccCHHHhhhhcc-cCCceeeeee--------cceeEEEEeeccchHHHHhccccc
Confidence 32 678999999999999999999999 9999999997 568999999999999999999999
Q ss_pred eeCCeEEEEEEe
Q 024018 261 VIMCLVIALSYL 272 (274)
Q Consensus 261 ~i~g~~i~v~~a 272 (274)
++.|++++|..+
T Consensus 136 ~~~gk~m~vq~s 147 (346)
T KOG0109|consen 136 EFQGKRMHVQLS 147 (346)
T ss_pred ccccceeeeeee
Confidence 999999988754
No 24
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=6.4e-26 Score=192.93 Aligned_cols=175 Identities=27% Similarity=0.327 Sum_probs=156.1
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCC-CeecCc--EEEEe
Q 024018 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLES-YEFEGR--TLKVN 174 (274)
Q Consensus 98 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~-~~~~g~--~i~v~ 174 (274)
.+.++||||.|+..+||+|++++|++||.|++|.|.++..|.+||+|||.|.+.+.|..||+.||| ..+.|. +|.|+
T Consensus 122 ~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVk 201 (510)
T KOG0144|consen 122 VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVK 201 (510)
T ss_pred ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEE
Confidence 347889999999999999999999999999999999999999999999999999999999999999 566775 89999
Q ss_pred ecccccCCCCCC--------------------------------------------------------------------
Q 024018 175 YAKIKKKNPFPP-------------------------------------------------------------------- 186 (274)
Q Consensus 175 ~~~~~~~~~~~~-------------------------------------------------------------------- 186 (274)
|+++++++..+.
T Consensus 202 FADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~a~~~qq~~~~~ 281 (510)
T KOG0144|consen 202 FADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLNATQLQQAAALA 281 (510)
T ss_pred ecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcchhHHHHHHHhh
Confidence 999874431000
Q ss_pred --------------------------------------------------------------------------------
Q 024018 187 -------------------------------------------------------------------------------- 186 (274)
Q Consensus 187 -------------------------------------------------------------------------------- 186 (274)
T Consensus 282 ~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~~a~a~~~sp~a 361 (510)
T KOG0144|consen 282 AAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGGMAGAGTTSPVA 361 (510)
T ss_pred hhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhcccccccccccccCccc
Confidence
Q ss_pred -------------------------------------------------------CCCCCCCccceEEecCCccccHHHH
Q 024018 187 -------------------------------------------------------VQPKPFATFNLFIANLSFEARAKDL 211 (274)
Q Consensus 187 -------------------------------------------------------~~~~~~~~~~l~V~nlp~~~~~~~l 211 (274)
...+.+.+.+|||.+||.+.-+.+|
T Consensus 362 a~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiyhlPqefgdq~l 441 (510)
T KOG0144|consen 362 ASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIYHLPQEFGDQDL 441 (510)
T ss_pred ccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeeeeCchhhhhHHH
Confidence 1113344678999999999999999
Q ss_pred HHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEee
Q 024018 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSYLY 273 (274)
Q Consensus 212 ~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a~ 273 (274)
-..|.. ||.|.+.++..|+.||-++.|+||.|++..+|..||.+|||+.|++++++|...|
T Consensus 442 ~~~f~p-fG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~ 502 (510)
T KOG0144|consen 442 IATFQP-FGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKR 502 (510)
T ss_pred HHHhcc-ccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeee
Confidence 999999 9999999999999999999999999999999999999999999999999997654
No 25
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.92 E-value=8.6e-25 Score=196.35 Aligned_cols=175 Identities=25% Similarity=0.420 Sum_probs=151.4
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCC----ceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEE
Q 024018 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR----NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKV 173 (274)
Q Consensus 98 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~----~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v 173 (274)
...++|||.||++.+|.++|...|...|.|..+.|...+++. +.|||||+|.+.++|.+|++.|+|..++|..|.|
T Consensus 513 ~~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~l 592 (725)
T KOG0110|consen 513 ETETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLEL 592 (725)
T ss_pred ccchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEE
Confidence 344449999999999999999999999999999998776543 5599999999999999999999999999999999
Q ss_pred eecccccCCCCCCCCCCCCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHH
Q 024018 174 NYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETA 253 (274)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A 253 (274)
.++..+.................|+|+|||+..+..+++++|.. ||.|.+|+++..-..+.++|||||+|-++.+|.+|
T Consensus 593 k~S~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~a-FGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA 671 (725)
T KOG0110|consen 593 KISENKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTA-FGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNA 671 (725)
T ss_pred EeccCccccccccccccccccceeeeeccchHHHHHHHHHHHhc-ccceeeeccchhhcchhhccceeeeccCcHHHHHH
Confidence 99983333222222222333678999999999999999999998 99999999998755566899999999999999999
Q ss_pred HHHhCCceeCCeEEEEEEee
Q 024018 254 ISAFQGKVIMCLVIALSYLY 273 (274)
Q Consensus 254 ~~~l~g~~i~g~~i~v~~a~ 273 (274)
+++|.++.+.||+|-+.||.
T Consensus 672 ~~al~STHlyGRrLVLEwA~ 691 (725)
T KOG0110|consen 672 FDALGSTHLYGRRLVLEWAK 691 (725)
T ss_pred HHhhcccceechhhheehhc
Confidence 99999999999999999984
No 26
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=8.9e-25 Score=175.60 Aligned_cols=174 Identities=27% Similarity=0.377 Sum_probs=153.3
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCC-eecC--cEEEEee
Q 024018 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESY-EFEG--RTLKVNY 175 (274)
Q Consensus 99 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~-~~~g--~~i~v~~ 175 (274)
+.++||||.|...-.|+|++.+|..||.|+++.+.+..+|.+||+|||.|.+..+|..||..|+|. .+-| ..|.|++
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 678899999999999999999999999999999999999999999999999999999999999994 4444 4788999
Q ss_pred cccccCCCCCC---------------------------------------------------------------------
Q 024018 176 AKIKKKNPFPP--------------------------------------------------------------------- 186 (274)
Q Consensus 176 ~~~~~~~~~~~--------------------------------------------------------------------- 186 (274)
++..+++..+.
T Consensus 98 ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A~ 177 (371)
T KOG0146|consen 98 ADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAAA 177 (371)
T ss_pred ccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccccC
Confidence 88663320000
Q ss_pred --------------------------------------------------------------------------------
Q 024018 187 -------------------------------------------------------------------------------- 186 (274)
Q Consensus 187 -------------------------------------------------------------------------------- 186 (274)
T Consensus 178 Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aay 257 (371)
T KOG0146|consen 178 PVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAAY 257 (371)
T ss_pred CcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhhc
Confidence
Q ss_pred --------------------CCCCCCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcC
Q 024018 187 --------------------VQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKS 246 (274)
Q Consensus 187 --------------------~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~ 246 (274)
.....+.+++|||..||.+..+.||...|-. ||.|.+.+|+.|+.|+.+++|+||.|++
T Consensus 258 paays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~P-FGhivSaKVFvDRATNQSKCFGFVSfDN 336 (371)
T KOG0146|consen 258 PAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLP-FGHIVSAKVFVDRATNQSKCFGFVSFDN 336 (371)
T ss_pred chhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhcc-ccceeeeeeeehhccccccceeeEecCC
Confidence 1123445799999999999999999999999 9999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCceeCCeEEEEEEee
Q 024018 247 KKVAETAISAFQGKVIMCLVIALSYLY 273 (274)
Q Consensus 247 ~~~a~~A~~~l~g~~i~g~~i~v~~a~ 273 (274)
+.+|+.||.+|||+.|+-++|+|..-|
T Consensus 337 p~SaQaAIqAMNGFQIGMKRLKVQLKR 363 (371)
T KOG0146|consen 337 PASAQAAIQAMNGFQIGMKRLKVQLKR 363 (371)
T ss_pred chhHHHHHHHhcchhhhhhhhhhhhcC
Confidence 999999999999999999999987654
No 27
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=1.8e-23 Score=183.03 Aligned_cols=147 Identities=25% Similarity=0.381 Sum_probs=138.8
Q ss_pred eEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeecccccC
Q 024018 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKK 181 (274)
Q Consensus 102 ~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~ 181 (274)
.|||| +++|+..|.++|+.+|+|+++++++|. + +-|||||.|.++++|++|++.||...+.|++|+|-|+.....
T Consensus 3 sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t-slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~~ 77 (369)
T KOG0123|consen 3 SLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T-SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDPS 77 (369)
T ss_pred ceecC---CcCChHHHHHHhcccCCceeEEEeecC-C-ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCCc
Confidence 58999 999999999999999999999999999 7 999999999999999999999999999999999999986533
Q ss_pred CCCCCCCCCCCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCce
Q 024018 182 NPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKV 261 (274)
Q Consensus 182 ~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~ 261 (274)
. +||.||+.+++..+|.++|+. ||.|.+|.+..+.+ | ++|| ||+|++.++|.+|++.+||..
T Consensus 78 ~--------------~~i~nl~~~~~~~~~~d~f~~-~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~l 139 (369)
T KOG0123|consen 78 L--------------VFIKNLDESIDNKSLYDTFSE-FGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGML 139 (369)
T ss_pred e--------------eeecCCCcccCcHHHHHHHHh-hcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcc
Confidence 2 999999999999999999998 99999999999986 4 8999 999999999999999999999
Q ss_pred eCCeEEEEEE
Q 024018 262 IMCLVIALSY 271 (274)
Q Consensus 262 i~g~~i~v~~ 271 (274)
+.|+.|.|..
T Consensus 140 l~~kki~vg~ 149 (369)
T KOG0123|consen 140 LNGKKIYVGL 149 (369)
T ss_pred cCCCeeEEee
Confidence 9999998864
No 28
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=8.2e-24 Score=170.33 Aligned_cols=137 Identities=33% Similarity=0.421 Sum_probs=119.4
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeec
Q 024018 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (274)
Q Consensus 97 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 176 (274)
+...++||||||+..+||+-|..+|.+.|.|..++|+.+ .|+|.|+
T Consensus 3 ~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~----------------------------------e~~v~wa 48 (321)
T KOG0148|consen 3 SDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD----------------------------------ELKVNWA 48 (321)
T ss_pred CCCCceEEeeccChhhHHHHHHHHHHhccccccceeehh----------------------------------hhccccc
Confidence 456789999999999999999999999999999999865 3556666
Q ss_pred ccccCCCCCCCCCCCCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHH
Q 024018 177 KIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256 (274)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 256 (274)
.......... ......+||+.|...++-++|++.|.+ ||+|.+++|++|..|++++||+||.|-++++|++||..
T Consensus 49 ~~p~nQsk~t----~~~hfhvfvgdls~eI~~e~lr~aF~p-FGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~ 123 (321)
T KOG0148|consen 49 TAPGNQSKPT----SNQHFHVFVGDLSPEIDNEKLREAFAP-FGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQ 123 (321)
T ss_pred cCcccCCCCc----cccceeEEehhcchhcchHHHHHHhcc-ccccccceEeecccCCcccceeEEeccchHHHHHHHHH
Confidence 6543222111 111467999999999999999999999 99999999999999999999999999999999999999
Q ss_pred hCCceeCCeEEEEEEe
Q 024018 257 FQGKVIMCLVIALSYL 272 (274)
Q Consensus 257 l~g~~i~g~~i~v~~a 272 (274)
|||.+|++|.|+..||
T Consensus 124 MnGqWlG~R~IRTNWA 139 (321)
T KOG0148|consen 124 MNGQWLGRRTIRTNWA 139 (321)
T ss_pred hCCeeeccceeecccc
Confidence 9999999999999997
No 29
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.90 E-value=1.6e-24 Score=189.81 Aligned_cols=179 Identities=20% Similarity=0.301 Sum_probs=157.9
Q ss_pred chhhhccCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCC-CCceeEEEEEECCHHHHHHHHHHcCCCeecCc
Q 024018 91 TEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYEFEGR 169 (274)
Q Consensus 91 ~~~~~~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~-~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~ 169 (274)
.....++.+.+++|+--|+..+++-+|.+||+.+|.|.+|+++.|+. ++++|.|||+|.+.+....||. |.|..+.|.
T Consensus 170 ~~l~~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~ 248 (549)
T KOG0147|consen 170 RILSPEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGV 248 (549)
T ss_pred ccCCchHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCc
Confidence 33445677889999999999999999999999999999999999985 8999999999999999999997 899999999
Q ss_pred EEEEeecccccCCCCCC-----CCCCCCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEE
Q 024018 170 TLKVNYAKIKKKNPFPP-----VQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSF 244 (274)
Q Consensus 170 ~i~v~~~~~~~~~~~~~-----~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f 244 (274)
+|.|......+...... ......+...|||+||.+.+++++|+.+|++ ||.|..|.+.+|..+|.++||+||+|
T Consensus 249 pv~vq~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifep-fg~Ie~v~l~~d~~tG~skgfGfi~f 327 (549)
T KOG0147|consen 249 PVIVQLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEP-FGKIENVQLTKDSETGRSKGFGFITF 327 (549)
T ss_pred eeEecccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccC-cccceeeeeccccccccccCcceEEE
Confidence 99999887665442111 1122334455999999999999999999999 99999999999999999999999999
Q ss_pred cCHHHHHHHHHHhCCceeCCeEEEEEE
Q 024018 245 KSKKVAETAISAFQGKVIMCLVIALSY 271 (274)
Q Consensus 245 ~~~~~a~~A~~~l~g~~i~g~~i~v~~ 271 (274)
.+.++|.+|++.|||..|.|+.|+|+.
T Consensus 328 ~~~~~ar~a~e~lngfelAGr~ikV~~ 354 (549)
T KOG0147|consen 328 VNKEDARKALEQLNGFELAGRLIKVSV 354 (549)
T ss_pred ecHHHHHHHHHHhccceecCceEEEEE
Confidence 999999999999999999999999874
No 30
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.89 E-value=3e-23 Score=175.78 Aligned_cols=168 Identities=21% Similarity=0.405 Sum_probs=152.1
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCC-CCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeecc
Q 024018 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (274)
Q Consensus 99 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~-~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 177 (274)
+.++||||+|++.++++.|+++|.+||+|.++.+++|+. ++++||+||+|++++.+.+++. ...+.++|+.|.++.+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 678899999999999999999999999999999999985 9999999999999999999987 46789999999999998
Q ss_pred cccCCCCCCCCCCCCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHh
Q 024018 178 IKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAF 257 (274)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l 257 (274)
++........ .....++||++||..++++++++.|+. ||.|.++.++.|..+.+++||+||.|++.+++.+++. .
T Consensus 84 ~r~~~~~~~~---~~~tkkiFvGG~~~~~~e~~~r~yfe~-~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~ 158 (311)
T KOG4205|consen 84 SREDQTKVGR---HLRTKKIFVGGLPPDTTEEDFKDYFEQ-FGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-Q 158 (311)
T ss_pred Cccccccccc---ccceeEEEecCcCCCCchHHHhhhhhc-cceeEeeEEeecccccccccceeeEeccccccceecc-c
Confidence 8766543221 225779999999999999999999999 9999999999999999999999999999999999998 4
Q ss_pred CCceeCCeEEEEEEe
Q 024018 258 QGKVIMCLVIALSYL 272 (274)
Q Consensus 258 ~g~~i~g~~i~v~~a 272 (274)
..+.|.|+.+.|.-|
T Consensus 159 ~f~~~~gk~vevkrA 173 (311)
T KOG4205|consen 159 KFHDFNGKKVEVKRA 173 (311)
T ss_pred ceeeecCceeeEeec
Confidence 889999999999866
No 31
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.89 E-value=2.8e-21 Score=177.09 Aligned_cols=80 Identities=18% Similarity=0.386 Sum_probs=75.8
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCC-CCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeecc
Q 024018 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (274)
Q Consensus 99 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~-~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 177 (274)
..++|||+||++++++++|+++|+.||.|.++++.+++. |+++|||||+|.+.++|.+|++.|||..++|+.|+|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 457899999999999999999999999999999999875 7899999999999999999999999999999999999987
Q ss_pred c
Q 024018 178 I 178 (274)
Q Consensus 178 ~ 178 (274)
.
T Consensus 283 ~ 283 (612)
T TIGR01645 283 T 283 (612)
T ss_pred C
Confidence 4
No 32
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=6e-22 Score=173.44 Aligned_cols=171 Identities=19% Similarity=0.343 Sum_probs=153.5
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeec
Q 024018 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (274)
Q Consensus 97 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 176 (274)
.++...|||.||++.++..+|.++|+.||.|.+|++..+.+| ++|| ||+|.++++|.+|++.+||..+.|++|.|...
T Consensus 73 ~rd~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~ 150 (369)
T KOG0123|consen 73 QRDPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLF 150 (369)
T ss_pred ccCCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeec
Confidence 334455999999999999999999999999999999999989 8999 99999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCCCCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHH
Q 024018 177 KIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256 (274)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 256 (274)
..+..+...... ....-..++|.+++...+++.|..+|.. +|.|..+.++.+.. |.++||+||.|++.++|..|++.
T Consensus 151 ~~~~er~~~~~~-~~~~~t~v~vk~~~~~~~~~~l~~~f~~-~g~i~s~~v~~~~~-g~~~~~gfv~f~~~e~a~~av~~ 227 (369)
T KOG0123|consen 151 ERKEEREAPLGE-YKKRFTNVYVKNLEEDSTDEELKDLFSA-YGSITSVAVMRDSI-GKSKGFGFVNFENPEDAKKAVET 227 (369)
T ss_pred cchhhhcccccc-hhhhhhhhheeccccccchHHHHHhhcc-cCcceEEEEeecCC-CCCCCccceeecChhHHHHHHHh
Confidence 888776654444 4444578999999999999999999998 99999999998875 56899999999999999999999
Q ss_pred hCCceeCCeEEEEEEe
Q 024018 257 FQGKVIMCLVIALSYL 272 (274)
Q Consensus 257 l~g~~i~g~~i~v~~a 272 (274)
|+|..++|..+.|.-+
T Consensus 228 l~~~~~~~~~~~V~~a 243 (369)
T KOG0123|consen 228 LNGKIFGDKELYVGRA 243 (369)
T ss_pred ccCCcCCccceeeccc
Confidence 9999999888877643
No 33
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.86 E-value=2.1e-20 Score=142.83 Aligned_cols=156 Identities=21% Similarity=0.359 Sum_probs=130.0
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeecc
Q 024018 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (274)
Q Consensus 98 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 177 (274)
...++|||||||.++.+.||.++|-+||.|..|.+.... ..-.||||+|+++.+|+.||..-+|..++|..|+|+++.
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~--g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP--GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC--CCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 356789999999999999999999999999999885332 236799999999999999999999999999999999998
Q ss_pred cccCCCCCC-----------------CCCCCCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEE
Q 024018 178 IKKKNPFPP-----------------VQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYG 240 (274)
Q Consensus 178 ~~~~~~~~~-----------------~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~a 240 (274)
......... ..........+.|.+||.+.++++|++.+.+ .|.|....+.+| |.+
T Consensus 82 ggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmRe-aGdvCfadv~rD-------g~G 153 (241)
T KOG0105|consen 82 GGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMRE-AGDVCFADVQRD-------GVG 153 (241)
T ss_pred CCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHh-hCCeeeeeeecc-------cce
Confidence 653211100 0112222467999999999999999999998 999999988765 479
Q ss_pred EEEEcCHHHHHHHHHHhCCceeC
Q 024018 241 FVSFKSKKVAETAISAFQGKVIM 263 (274)
Q Consensus 241 fV~f~~~~~a~~A~~~l~g~~i~ 263 (274)
.|+|...++...|+.+|....+.
T Consensus 154 vV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 154 VVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred eeeeeehhhHHHHHHhhcccccc
Confidence 99999999999999999877664
No 34
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.85 E-value=9.3e-21 Score=166.33 Aligned_cols=168 Identities=26% Similarity=0.360 Sum_probs=135.2
Q ss_pred CeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecC-CCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeecccc
Q 024018 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179 (274)
Q Consensus 101 ~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 179 (274)
..||||||.+++++++|+.+|+.||.|+.|.+.+|. +|.++|||||+|.+.++|.+|+..|||..|-||.|+|..-..+
T Consensus 279 ~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 279 RRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred hhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeee
Confidence 339999999999999999999999999999999997 7999999999999999999999999999999999998665433
Q ss_pred cCCCCCC---------------------------------------------------------------CCCCC-----
Q 024018 180 KKNPFPP---------------------------------------------------------------VQPKP----- 191 (274)
Q Consensus 180 ~~~~~~~---------------------------------------------------------------~~~~~----- 191 (274)
....... .....
T Consensus 359 ~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~ 438 (549)
T KOG0147|consen 359 VDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPA 438 (549)
T ss_pred cccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccccc
Confidence 2111000 00011
Q ss_pred --CCccceEEecCC--ccc--------cHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCC
Q 024018 192 --FATFNLFIANLS--FEA--------RAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259 (274)
Q Consensus 192 --~~~~~l~V~nlp--~~~--------~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g 259 (274)
.++.++.+.|+= ... -.++|.+-+++ ||+|..|.|-+. +.|+.||.|.+.++|..|+++|||
T Consensus 439 ~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k-~g~v~hi~vd~n-----s~g~VYvrc~s~~~A~~a~~alhg 512 (549)
T KOG0147|consen 439 FDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGK-HGKVCHIFVDKN-----SAGCVYVRCPSAEAAGTAVKALHG 512 (549)
T ss_pred cCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHh-cCCeeEEEEccC-----CCceEEEecCcHHHHHHHHHHHhh
Confidence 345666777662 111 23678888898 999998877432 459999999999999999999999
Q ss_pred ceeCCeEEEEEEeeC
Q 024018 260 KVIMCLVIALSYLYL 274 (274)
Q Consensus 260 ~~i~g~~i~v~~a~l 274 (274)
.||.|+.|+++|-.|
T Consensus 513 rWF~gr~Ita~~~~~ 527 (549)
T KOG0147|consen 513 RWFAGRMITAKYLPL 527 (549)
T ss_pred hhhccceeEEEEeeh
Confidence 999999999998643
No 35
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.84 E-value=1.2e-19 Score=143.69 Aligned_cols=165 Identities=25% Similarity=0.364 Sum_probs=142.3
Q ss_pred CeEEEeCCCCCCCHHHHHH----HHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeec
Q 024018 101 TRLVAQNVPWTSTHEDIRA----LFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (274)
Q Consensus 101 ~~l~v~nLp~~~t~~~L~~----~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 176 (274)
.+|||.||...+..++|+. +|++||.|.+|...+ +.+.+|-|||.|.+.+.|..|++.|+|..+.|++++|.||
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k--t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA 87 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK--TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYA 87 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC--CCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecc
Confidence 3899999999999999999 999999999997764 4577999999999999999999999999999999999999
Q ss_pred ccccCCCCCC----------------C-------------------------CCCCCCccceEEecCCccccHHHHHHHH
Q 024018 177 KIKKKNPFPP----------------V-------------------------QPKPFATFNLFIANLSFEARAKDLREFF 215 (274)
Q Consensus 177 ~~~~~~~~~~----------------~-------------------------~~~~~~~~~l~V~nlp~~~~~~~l~~~f 215 (274)
+.+.+.-... . .....+...+|+.|||..++.+.+..+|
T Consensus 88 ~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~lf 167 (221)
T KOG4206|consen 88 KSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDLF 167 (221)
T ss_pred cCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHHHH
Confidence 8764332110 0 1124556889999999999999999999
Q ss_pred hhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeC-CeEEEEEEee
Q 024018 216 ISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM-CLVIALSYLY 273 (274)
Q Consensus 216 ~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~-g~~i~v~~a~ 273 (274)
+. |....+++++.. ..+.|||+|.+...|..|..+|+|..|- ...+.|.||.
T Consensus 168 ~q-f~g~keir~i~~-----~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 168 EQ-FPGFKEIRLIPP-----RSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred hh-CcccceeEeccC-----CCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 99 888999888753 3678999999999999999999999997 8899999874
No 36
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.81 E-value=9.7e-19 Score=151.88 Aligned_cols=167 Identities=22% Similarity=0.305 Sum_probs=132.7
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeeccc
Q 024018 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178 (274)
Q Consensus 99 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 178 (274)
....|.+.+|||++|++||.+||+.++ |+++.+. ..+|+..|-|||+|.+.+++.+|++ .+-..+..|.|.|..+..
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~-r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~~ 85 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIP-RRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAGG 85 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCc-eeEEEEe-ccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccCC
Confidence 445688999999999999999999996 7775553 3469999999999999999999999 588888999999988866
Q ss_pred ccCCCCC-CCC-CCCCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHH
Q 024018 179 KKKNPFP-PVQ-PKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256 (274)
Q Consensus 179 ~~~~~~~-~~~-~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 256 (274)
......- +.. ........|-+++||+.++++||.+||+. --.|....++.....+++.|-|||.|++.+.|++|+..
T Consensus 86 ~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaG-L~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r 164 (510)
T KOG4211|consen 86 AEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAG-LEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR 164 (510)
T ss_pred ccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcC-CcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH
Confidence 5432211 111 11134578999999999999999999997 44444433344455578999999999999999999996
Q ss_pred hCCceeCCeEEEEE
Q 024018 257 FQGKVIMCLVIALS 270 (274)
Q Consensus 257 l~g~~i~g~~i~v~ 270 (274)
|...|+-|.|.|-
T Consensus 165 -hre~iGhRYIEvF 177 (510)
T KOG4211|consen 165 -HRENIGHRYIEVF 177 (510)
T ss_pred -HHHhhccceEEee
Confidence 7888888888874
No 37
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.80 E-value=4e-18 Score=142.02 Aligned_cols=169 Identities=20% Similarity=0.262 Sum_probs=138.8
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHhccCceE--------EEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCc
Q 024018 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVL--------DIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGR 169 (274)
Q Consensus 98 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~--------~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~ 169 (274)
...+.|||.|||.++|.+++.++|+.||.|. .|+|.++..|..+|=|.|.|-..++++.|++.|++..++|+
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 3456699999999999999999999999875 37898998999999999999999999999999999999999
Q ss_pred EEEEeecccccCCCCC-----------------------------CCCCCCCCccceEEecCC----ccc-------cHH
Q 024018 170 TLKVNYAKIKKKNPFP-----------------------------PVQPKPFATFNLFIANLS----FEA-------RAK 209 (274)
Q Consensus 170 ~i~v~~~~~~~~~~~~-----------------------------~~~~~~~~~~~l~V~nlp----~~~-------~~~ 209 (274)
.|+|..|+........ .........++|.+.|+= ... -++
T Consensus 212 ~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlke 291 (382)
T KOG1548|consen 212 KLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKE 291 (382)
T ss_pred EEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHH
Confidence 9999999865332111 012223345788898872 111 246
Q ss_pred HHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 024018 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271 (274)
Q Consensus 210 ~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~ 271 (274)
+|++-+++ ||.|..|.|.-. ++.|.+.|.|.+.++|..||+.|+|++++||.|..+.
T Consensus 292 dl~eec~K-~G~v~~vvv~d~----hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i 348 (382)
T KOG1548|consen 292 DLTEECEK-FGQVRKVVVYDR----HPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASI 348 (382)
T ss_pred HHHHHHHH-hCCcceEEEecc----CCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEE
Confidence 78888998 999999977532 4688999999999999999999999999999998764
No 38
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.79 E-value=2.3e-18 Score=132.05 Aligned_cols=85 Identities=27% Similarity=0.539 Sum_probs=78.7
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecC-CCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEee
Q 024018 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (274)
Q Consensus 97 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 175 (274)
....++|||+|||+++++++|+++|++||.|.++.++.+. +++++|||||+|.+.++|++|++.|++..++|+.|+|.+
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 3456789999999999999999999999999999999887 589999999999999999999999999999999999999
Q ss_pred cccccC
Q 024018 176 AKIKKK 181 (274)
Q Consensus 176 ~~~~~~ 181 (274)
+..+..
T Consensus 111 a~~~~~ 116 (144)
T PLN03134 111 ANDRPS 116 (144)
T ss_pred CCcCCC
Confidence 986544
No 39
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.77 E-value=1.6e-17 Score=142.16 Aligned_cols=173 Identities=22% Similarity=0.345 Sum_probs=146.5
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHh-ccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeecc
Q 024018 99 SKTRLVAQNVPWTSTHEDIRALFE-QHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (274)
Q Consensus 99 ~~~~l~v~nLp~~~t~~~L~~~f~-~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 177 (274)
..+.+||.|||+++...+|+++|. +-|+|+.|.++.|..|+++|+|.|+|+++|.++||++.||...+.||+|.|+...
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 446699999999999999999997 5789999999999999999999999999999999999999999999999999877
Q ss_pred cccCCC-----------------------------------------------CCC------------------------
Q 024018 178 IKKKNP-----------------------------------------------FPP------------------------ 186 (274)
Q Consensus 178 ~~~~~~-----------------------------------------------~~~------------------------ 186 (274)
..+... ...
T Consensus 123 d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~ 202 (608)
T KOG4212|consen 123 DEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSAS 202 (608)
T ss_pred chhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhh
Confidence 531110 000
Q ss_pred -----CCCCCCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCce
Q 024018 187 -----VQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKV 261 (274)
Q Consensus 187 -----~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~ 261 (274)
-....+-..++||.||.+.+..+.|++.|.- .|.|..+.+-.|+. |.++|+|.++|.++-+|..||.+|++.-
T Consensus 203 Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgm-AGkv~~vdf~idKe-G~s~G~~vi~y~hpveavqaIsml~~~g 280 (608)
T KOG4212|consen 203 FLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGM-AGKVQSVDFSIDKE-GNSRGFAVIEYDHPVEAVQAISMLDRQG 280 (608)
T ss_pred hhhhccCCCCCccceeeeeccccccchHHHHHHhcc-ceeeeeeceeeccc-cccCCeeEEEecchHHHHHHHHhhccCC
Confidence 0012233467999999999999999999995 99999999988876 6899999999999999999999999877
Q ss_pred eCCeEEEEEEee
Q 024018 262 IMCLVIALSYLY 273 (274)
Q Consensus 262 i~g~~i~v~~a~ 273 (274)
+.+++..+...+
T Consensus 281 ~~~~~~~~Rl~~ 292 (608)
T KOG4212|consen 281 LFDRRMTVRLDR 292 (608)
T ss_pred Cccccceeeccc
Confidence 777777776543
No 40
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.77 E-value=3.6e-18 Score=131.01 Aligned_cols=80 Identities=35% Similarity=0.478 Sum_probs=76.8
Q ss_pred CccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 024018 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSYL 272 (274)
Q Consensus 193 ~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a 272 (274)
...+|||+|||..+++++|+++|++ ||.|.++.++.|..+++++|||||+|++.++|++|++.|+|..|+|+.|+|+|+
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~-~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAH-FGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhc-CCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 3678999999999999999999999 999999999999999999999999999999999999999999999999999997
Q ss_pred e
Q 024018 273 Y 273 (274)
Q Consensus 273 ~ 273 (274)
+
T Consensus 112 ~ 112 (144)
T PLN03134 112 N 112 (144)
T ss_pred C
Confidence 4
No 41
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.76 E-value=9e-18 Score=151.51 Aligned_cols=172 Identities=27% Similarity=0.377 Sum_probs=139.9
Q ss_pred ccCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEee
Q 024018 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (274)
Q Consensus 96 ~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 175 (274)
.+...+.|+|+|||..+..++|...|..||.|..+.|. +. ..-++|.|.++.+|.+|++.|....+...++++.|
T Consensus 381 ~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp--~~---G~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~ 455 (725)
T KOG0110|consen 381 AERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLP--PG---GTGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEW 455 (725)
T ss_pred hhhhcceeeeccCccccccHHHHHHhhcccccceeecC--cc---cceeeeeecCccchHHHHHHhchhhhccCcccccc
Confidence 45567889999999999999999999999999999654 22 22499999999999999999999999888998888
Q ss_pred cccccCCCCC----------------C--------------CC-----------CCCCCccceEEecCCccccHHHHHHH
Q 024018 176 AKIKKKNPFP----------------P--------------VQ-----------PKPFATFNLFIANLSFEARAKDLREF 214 (274)
Q Consensus 176 ~~~~~~~~~~----------------~--------------~~-----------~~~~~~~~l~V~nlp~~~~~~~l~~~ 214 (274)
+...-....+ . .. .......+|||.||++.++.+++...
T Consensus 456 aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~ 535 (725)
T KOG0110|consen 456 APEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDL 535 (725)
T ss_pred ChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHH
Confidence 7643211000 0 00 00011133999999999999999999
Q ss_pred HhhcCCceEEEEEEEcCCCC---CCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEee
Q 024018 215 FISEGWDVVSAEVIFHDNPR---RSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSYLY 273 (274)
Q Consensus 215 f~~~~G~v~~~~i~~~~~~g---~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a~ 273 (274)
|.. .|.|.++.|...++.. .+.|||||+|.+.++|+.|+++|+|+.|+|+.|.|+++.
T Consensus 536 F~k-~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 536 FSK-QGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred HHh-cCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 998 9999999998776532 266999999999999999999999999999999999874
No 42
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.75 E-value=3e-18 Score=136.95 Aligned_cols=153 Identities=25% Similarity=0.473 Sum_probs=130.1
Q ss_pred eEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeecccccC
Q 024018 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKK 181 (274)
Q Consensus 102 ~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~ 181 (274)
.+|||+||+.+.+.+|..||..||.+.++.|. .||+||+|.+..+|+.|+..++|..|.|..+.|.++.....
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk-------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~ 75 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMK-------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRR 75 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceee-------cccceeccCchhhhhcccchhcCceecceeeeeeccccccc
Confidence 59999999999999999999999999999996 78999999999999999999999999998899999885422
Q ss_pred CCCCC-----------CCCCCCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHH
Q 024018 182 NPFPP-----------VQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVA 250 (274)
Q Consensus 182 ~~~~~-----------~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a 250 (274)
....+ .....-..+.+.|.++...+.+.+|.+.|.+ +|.+..... .++++||+|...++|
T Consensus 76 ~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~-~g~~~~~~~--------~~~~~~v~Fs~~~da 146 (216)
T KOG0106|consen 76 GRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRP-AGEVTYVDA--------RRNFAFVEFSEQEDA 146 (216)
T ss_pred ccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcc-cCCCchhhh--------hccccceeehhhhhh
Confidence 22110 1111223467889999999999999999998 999954433 367899999999999
Q ss_pred HHHHHHhCCceeCCeEEEEE
Q 024018 251 ETAISAFQGKVIMCLVIALS 270 (274)
Q Consensus 251 ~~A~~~l~g~~i~g~~i~v~ 270 (274)
.+|+..|+|..+.|+.|++.
T Consensus 147 ~ra~~~l~~~~~~~~~l~~~ 166 (216)
T KOG0106|consen 147 KRALEKLDGKKLNGRRISVE 166 (216)
T ss_pred hhcchhccchhhcCceeeec
Confidence 99999999999999999874
No 43
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.72 E-value=4.9e-17 Score=109.36 Aligned_cols=70 Identities=31% Similarity=0.570 Sum_probs=67.5
Q ss_pred EEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEE
Q 024018 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172 (274)
Q Consensus 103 l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~ 172 (274)
|||+|||+++++++|+++|+.||.|..+.+..+..+..+|+|||+|.+.++|++|++.|+|..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999999999999999987799999999999999999999999999999999885
No 44
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.72 E-value=1.9e-16 Score=132.97 Aligned_cols=177 Identities=15% Similarity=0.191 Sum_probs=140.0
Q ss_pred hhhccCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCC-CCceeEEEEEECCHHHHHHHHHHcCCCeecCcEE
Q 024018 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTL 171 (274)
Q Consensus 93 ~~~~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~-~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i 171 (274)
..++...-++|||..+.++.+|+||+..|+.||+|..|.+.+..+ +.++||+|++|.+..+...|+..||-..++|+.|
T Consensus 203 vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyL 282 (544)
T KOG0124|consen 203 VQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYL 282 (544)
T ss_pred HHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceE
Confidence 445566788999999999999999999999999999999999987 6799999999999999999999999999999999
Q ss_pred EEeecccccCCC--------------------------------------------------------------------
Q 024018 172 KVNYAKIKKKNP-------------------------------------------------------------------- 183 (274)
Q Consensus 172 ~v~~~~~~~~~~-------------------------------------------------------------------- 183 (274)
+|..+-.....-
T Consensus 283 RVGk~vTPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p~~~l~qa~~a~~~p 362 (544)
T KOG0124|consen 283 RVGKCVTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQPLGTLPQAVMAAQAP 362 (544)
T ss_pred ecccccCCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCccccccCCCCCccccchhccCC
Confidence 998775331110
Q ss_pred --------CCC-----------------------------------------------------------------CCCC
Q 024018 184 --------FPP-----------------------------------------------------------------VQPK 190 (274)
Q Consensus 184 --------~~~-----------------------------------------------------------------~~~~ 190 (274)
.++ ..-.
T Consensus 363 gvi~~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~G~sARhlvMqkLmR 442 (544)
T KOG0124|consen 363 GVITGVTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSISGSSARHLVMQKLMR 442 (544)
T ss_pred ceeccCCCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhhhCccccCccHHHHHHHHHhc
Confidence 000 0001
Q ss_pred CCCccceEEecC--Ccccc---HHHHHHHHhhcCCceEEEEEEEcCCCCCC----ccEEEEEEcCHHHHHHHHHHhCCce
Q 024018 191 PFATFNLFIANL--SFEAR---AKDLREFFISEGWDVVSAEVIFHDNPRRS----AGYGFVSFKSKKVAETAISAFQGKV 261 (274)
Q Consensus 191 ~~~~~~l~V~nl--p~~~~---~~~l~~~f~~~~G~v~~~~i~~~~~~g~~----~g~afV~f~~~~~a~~A~~~l~g~~ 261 (274)
...++.+.++|+ |.+++ +.+|++.|.+ ||.|.++.|.....++.- ---.||+|....++.+|..+|+|++
T Consensus 443 ~~~S~VivLRNMV~P~DiDe~LegEi~EECgK-fG~V~rViI~nekq~e~edaeiiVKIFVefS~~~e~~rak~ALdGRf 521 (544)
T KOG0124|consen 443 KQESTVIVLRNMVDPKDIDEDLEGEITEECGK-FGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIASETHRAKQALDGRF 521 (544)
T ss_pred cccCcEEEEeccCChhhhhhHHHHHHHHHHhc-ccceeEEEEEecccccccchhhhheeeeeechhhHHHHHHHhhccce
Confidence 122356777886 44444 4689999998 999999988766544321 1248999999999999999999999
Q ss_pred eCCeEEEEE
Q 024018 262 IMCLVIALS 270 (274)
Q Consensus 262 i~g~~i~v~ 270 (274)
++||++..+
T Consensus 522 FgGr~VvAE 530 (544)
T KOG0124|consen 522 FGGRKVVAE 530 (544)
T ss_pred ecCceeehh
Confidence 999988653
No 45
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.71 E-value=5e-16 Score=122.34 Aligned_cols=161 Identities=24% Similarity=0.271 Sum_probs=124.9
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCC--CCceeEEEEEECCHHHHHHHHHHcCCCeec---CcEEE
Q 024018 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAALNNLESYEFE---GRTLK 172 (274)
Q Consensus 98 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~--~~~~g~afv~f~~~~~a~~a~~~l~~~~~~---g~~i~ 172 (274)
..-|+|||.+||.++...||..+|..|---+...+..... ...+-+|||+|.+..+|.+|+..|||..|+ +..|+
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 3468999999999999999999999987777776655433 245679999999999999999999999995 67899
Q ss_pred EeecccccCCCCCC------------------------------------------------------------------
Q 024018 173 VNYAKIKKKNPFPP------------------------------------------------------------------ 186 (274)
Q Consensus 173 v~~~~~~~~~~~~~------------------------------------------------------------------ 186 (274)
++.++...+.....
T Consensus 112 iElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P 191 (284)
T KOG1457|consen 112 IELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAP 191 (284)
T ss_pred eeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCC
Confidence 98887542211000
Q ss_pred ---------CC--CCCCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHH
Q 024018 187 ---------VQ--PKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255 (274)
Q Consensus 187 ---------~~--~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~ 255 (274)
.+ .......+|||.||...++|++|+.+|++ |......+|... .....||++|++.+.|..|+.
T Consensus 192 ~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~-~~gf~~l~~~~~----~g~~vaf~~~~~~~~at~am~ 266 (284)
T KOG1457|consen 192 SANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSR-YPGFHILKIRAR----GGMPVAFADFEEIEQATDAMN 266 (284)
T ss_pred cccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHh-CCCceEEEEecC----CCcceEeecHHHHHHHHHHHH
Confidence 00 00111257999999999999999999999 766665555322 245689999999999999999
Q ss_pred HhCCceeC
Q 024018 256 AFQGKVIM 263 (274)
Q Consensus 256 ~l~g~~i~ 263 (274)
.|+|..|-
T Consensus 267 ~lqg~~~s 274 (284)
T KOG1457|consen 267 HLQGNLLS 274 (284)
T ss_pred Hhhcceec
Confidence 99998773
No 46
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.69 E-value=1.3e-16 Score=141.87 Aligned_cols=175 Identities=21% Similarity=0.280 Sum_probs=141.8
Q ss_pred ccCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCC-CCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEe
Q 024018 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174 (274)
Q Consensus 96 ~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~-~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 174 (274)
.......+||++||...++.++++++..||.+....++.+.. |.++||||.+|.+......|+..|||..++++.|.|.
T Consensus 285 ~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq 364 (500)
T KOG0120|consen 285 VPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQ 364 (500)
T ss_pred cccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEee
Confidence 345667899999999999999999999999999999998875 8999999999999999999999999999999999999
Q ss_pred ecccccCCCCCC---------------CCCCCCCccceEEecCC--cc--------ccHHHHHHHHhhcCCceEEEEEEE
Q 024018 175 YAKIKKKNPFPP---------------VQPKPFATFNLFIANLS--FE--------ARAKDLREFFISEGWDVVSAEVIF 229 (274)
Q Consensus 175 ~~~~~~~~~~~~---------------~~~~~~~~~~l~V~nlp--~~--------~~~~~l~~~f~~~~G~v~~~~i~~ 229 (274)
.+.......... .+....++..|.+.|+= .. --.++++.-+.+ ||.|..|.+.+
T Consensus 365 ~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k-~g~v~~v~ipr 443 (500)
T KOG0120|consen 365 RAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAK-FGAVRSVEIPR 443 (500)
T ss_pred hhhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcc-cCceeEEecCC
Confidence 987654332211 12233445556655541 11 122466777777 89999999987
Q ss_pred c---CCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 024018 230 H---DNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271 (274)
Q Consensus 230 ~---~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~ 271 (274)
+ .....+.|..||+|.+.+++++|..+|+|+++.||.|..+|
T Consensus 444 ~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsY 488 (500)
T KOG0120|consen 444 PYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASY 488 (500)
T ss_pred CCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEe
Confidence 7 22334678899999999999999999999999999999987
No 47
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.69 E-value=1.7e-15 Score=128.92 Aligned_cols=165 Identities=16% Similarity=0.194 Sum_probs=136.3
Q ss_pred CCeEEEeCCCC-CCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeeccc
Q 024018 100 KTRLVAQNVPW-TSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178 (274)
Q Consensus 100 ~~~l~v~nLp~-~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 178 (274)
...|.|.||.. .+|.+-|..+|+-||.|.+|.|..++ +-.|.|.|.+...|.-|+.+|+|..+.|++|+|.+++.
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH 372 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKH 372 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC----CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccC
Confidence 57788999965 58999999999999999999998874 46799999999999999999999999999999999985
Q ss_pred ccCCCCCC--------------------------CCCCCCCccceEEecCCccccHHHHHHHHhhcCCce-EEEEEEEcC
Q 024018 179 KKKNPFPP--------------------------VQPKPFATFNLFIANLSFEARAKDLREFFISEGWDV-VSAEVIFHD 231 (274)
Q Consensus 179 ~~~~~~~~--------------------------~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v-~~~~i~~~~ 231 (274)
..-..... .....+++.+|++.|+|.+++||+++..|.+ -|.. +-....
T Consensus 373 ~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~-~g~~vkafkff--- 448 (492)
T KOG1190|consen 373 TNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQE-PGGQVKAFKFF--- 448 (492)
T ss_pred ccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhc-CCceEEeeeec---
Confidence 53221110 1112356679999999999999999999998 5544 444332
Q ss_pred CCCCCccEEEEEEcCHHHHHHHHHHhCCceeCC-eEEEEEEeeC
Q 024018 232 NPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC-LVIALSYLYL 274 (274)
Q Consensus 232 ~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g-~~i~v~~a~l 274 (274)
+..+.+|++.+++.|+|..|+-.++++.+++ ..++|+|++.
T Consensus 449 --~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 449 --QKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred --CCCcceeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 3457799999999999999999999999985 4999999874
No 48
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.69 E-value=6.5e-17 Score=116.53 Aligned_cols=86 Identities=21% Similarity=0.330 Sum_probs=79.3
Q ss_pred hccCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCC-CCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEE
Q 024018 95 EEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKV 173 (274)
Q Consensus 95 ~~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~-~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v 173 (274)
.....+++||||||+..++|++|.++|+.+|+|..|.|-.|+. ..+.|||||+|.+.++|+.|++.++|..++.+.|++
T Consensus 31 ~a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~ 110 (153)
T KOG0121|consen 31 EALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRI 110 (153)
T ss_pred HHHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceee
Confidence 3456789999999999999999999999999999999998885 789999999999999999999999999999999999
Q ss_pred eeccccc
Q 024018 174 NYAKIKK 180 (274)
Q Consensus 174 ~~~~~~~ 180 (274)
.|...-.
T Consensus 111 D~D~GF~ 117 (153)
T KOG0121|consen 111 DWDAGFV 117 (153)
T ss_pred eccccch
Confidence 9987543
No 49
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.67 E-value=5.3e-16 Score=104.51 Aligned_cols=70 Identities=34% Similarity=0.605 Sum_probs=65.2
Q ss_pred EEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEE
Q 024018 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172 (274)
Q Consensus 103 l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~ 172 (274)
|||+|||+++++++|+++|+.||.|..+.+..+++|..+|+|||+|.+.++|.+|++.++|..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999999999999999999999999999999988899999999999999999999999999999999885
No 50
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.67 E-value=6.2e-16 Score=103.91 Aligned_cols=70 Identities=33% Similarity=0.516 Sum_probs=66.8
Q ss_pred eEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEE
Q 024018 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIA 268 (274)
Q Consensus 197 l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~ 268 (274)
|||+|||..+++++|+++|+. ||.|..+.+..+ .++..+|+|||+|++.++|.+|++.|+|..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~-~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQ-FGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHT-TSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHH-hhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999 999999999988 5688999999999999999999999999999999986
No 51
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.67 E-value=3.4e-16 Score=136.56 Aligned_cols=81 Identities=21% Similarity=0.292 Sum_probs=77.4
Q ss_pred CCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 024018 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271 (274)
Q Consensus 192 ~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~ 271 (274)
...++|||+|||.++++++|+++|+. ||.|++|+|++|..+++++|||||+|.+.++|.+|++.|+|..+.+++|+|.|
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~-~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~ 183 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRT-IGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSY 183 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeec
Confidence 34689999999999999999999998 99999999999999999999999999999999999999999999999999998
Q ss_pred ee
Q 024018 272 LY 273 (274)
Q Consensus 272 a~ 273 (274)
++
T Consensus 184 a~ 185 (346)
T TIGR01659 184 AR 185 (346)
T ss_pred cc
Confidence 74
No 52
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.67 E-value=4.6e-16 Score=128.95 Aligned_cols=83 Identities=35% Similarity=0.621 Sum_probs=77.0
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeec
Q 024018 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (274)
Q Consensus 97 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 176 (274)
....++|+|.|||+...|-||+.+|++||+|.+|.|+.+..| +||||||+|++.+||++|.+.|||.++.||+|.|+.+
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERG-SKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERG-SKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNA 171 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCC-CCccceEEecChhhHHHHHHHhhcceeeceEEEEecc
Confidence 335677999999999999999999999999999999988776 5999999999999999999999999999999999999
Q ss_pred cccc
Q 024018 177 KIKK 180 (274)
Q Consensus 177 ~~~~ 180 (274)
..+-
T Consensus 172 TarV 175 (376)
T KOG0125|consen 172 TARV 175 (376)
T ss_pred chhh
Confidence 8763
No 53
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.66 E-value=1.3e-15 Score=129.18 Aligned_cols=159 Identities=27% Similarity=0.377 Sum_probs=122.5
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecC-CCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeeccc
Q 024018 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178 (274)
Q Consensus 100 ~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 178 (274)
.++|||+|||+.+++++|+++|..||.|..+.+..++ +|.++|+|||+|.+.++|..|+..++|..|.|+.|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 6899999999999999999999999999999999996 699999999999999999999999999999999999999642
Q ss_pred ----ccCCCC-----------CCCCCCCCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEE
Q 024018 179 ----KKKNPF-----------PPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVS 243 (274)
Q Consensus 179 ----~~~~~~-----------~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~ 243 (274)
...... ............+++.+++..+...++...|.. +|.+....+.............++.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKS-RGDIVRASLPPSKDGKIPKSRSFVG 273 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccc-cccceeeeccCCCCCcccccccccc
Confidence 222210 111223334578999999999999999999998 8998666665544333334444445
Q ss_pred EcCHHHHHHHHHHhCC
Q 024018 244 FKSKKVAETAISAFQG 259 (274)
Q Consensus 244 f~~~~~a~~A~~~l~g 259 (274)
+.....+.........
T Consensus 274 ~~~~~~~~~~~~~~~~ 289 (306)
T COG0724 274 NEASKDALESNSRGNK 289 (306)
T ss_pred hhHHHhhhhhhccccc
Confidence 5555555544444333
No 54
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.65 E-value=6.2e-16 Score=122.95 Aligned_cols=80 Identities=25% Similarity=0.492 Sum_probs=73.5
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCC-CCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeecc
Q 024018 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (274)
Q Consensus 99 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~-~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 177 (274)
.-++||||||+|.++.++|+++|++||+|++..++.|+. |++||||||+|++.++|.+|++. ..-.|+||+..++.+.
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLAS 89 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhh
Confidence 457899999999999999999999999999999988885 99999999999999999999984 5678999999999988
Q ss_pred cc
Q 024018 178 IK 179 (274)
Q Consensus 178 ~~ 179 (274)
..
T Consensus 90 lg 91 (247)
T KOG0149|consen 90 LG 91 (247)
T ss_pred hc
Confidence 73
No 55
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.64 E-value=1.2e-15 Score=140.07 Aligned_cols=117 Identities=23% Similarity=0.231 Sum_probs=98.9
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhcc--CceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeec
Q 024018 99 SKTRLVAQNVPWTSTHEDIRALFEQH--GTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (274)
Q Consensus 99 ~~~~l~v~nLp~~~t~~~L~~~f~~~--G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 176 (274)
..++|||+||++.+++++|+++|+.| |.|++|.++ ++||||+|.+.++|.+|++.|||..|+|+.|+|.|+
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~-------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~A 304 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI-------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLA 304 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee-------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 34789999999999999999999999 999999876 669999999999999999999999999999999999
Q ss_pred ccccCCCC-------------------CCCCCCCCCccceEEecCCccccHHHHHHHHhhcCCceE
Q 024018 177 KIKKKNPF-------------------PPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVV 223 (274)
Q Consensus 177 ~~~~~~~~-------------------~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~ 223 (274)
++...... ...........+++++|+++..+++.+.++|.. .|.|.
T Consensus 305 kp~~~~~~~~~~rg~gg~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~~~f~~-~g~~~ 369 (578)
T TIGR01648 305 KPVDKKSYVRYTRGTGGRGKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAPSLHFPRM-PGPIR 369 (578)
T ss_pred cCCCcccccccccccCCCcccccccccccCcccCccccccccccccccccccchhhcccc-Ccccc
Confidence 87543310 001122335688999999999999999999997 77653
No 56
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.64 E-value=3.7e-16 Score=124.22 Aligned_cols=79 Identities=29% Similarity=0.438 Sum_probs=74.1
Q ss_pred ccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEee
Q 024018 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSYLY 273 (274)
Q Consensus 194 ~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a~ 273 (274)
-.+|||+||++.+..|+|+++|++ ||+|.+..|+.|..+|+++|||||.|++.++|.+|++. -+-.|+||+..|.+|.
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeq-fGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQ-FGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLAS 89 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHH-hCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhh
Confidence 468999999999999999999999 99999999999999999999999999999999999995 5678999999998886
Q ss_pred C
Q 024018 274 L 274 (274)
Q Consensus 274 l 274 (274)
|
T Consensus 90 l 90 (247)
T KOG0149|consen 90 L 90 (247)
T ss_pred h
Confidence 5
No 57
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=8.3e-15 Score=128.44 Aligned_cols=159 Identities=16% Similarity=0.214 Sum_probs=119.2
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecC--CC--Ccee---EEEEEECCHHHHHHHHHHcCC---C--
Q 024018 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS--KN--RNRG---LAFVTMGSPDEATAALNNLES---Y-- 164 (274)
Q Consensus 97 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~--~~--~~~g---~afv~f~~~~~a~~a~~~l~~---~-- 164 (274)
..-.++||||+||++++|++|...|..||.+. |...... .+ -++| |+|+.|+++..+...+....- .
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~y 334 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYY 334 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccceE
Confidence 34568999999999999999999999999854 3333221 12 3566 999999999998876654321 1
Q ss_pred ------eecCcEEEEeecccccCCCCCCCCCCCCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCcc
Q 024018 165 ------EFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAG 238 (274)
Q Consensus 165 ------~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g 238 (274)
.+..+.+.|..+......-.......-.+.++|||++||..++.++|..+|++.||.|..+.|-.|++-+-++|
T Consensus 335 f~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkG 414 (520)
T KOG0129|consen 335 FKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKG 414 (520)
T ss_pred EEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCC
Confidence 11222344443333222111112233456799999999999999999999999999999999999988888999
Q ss_pred EEEEEEcCHHHHHHHHHH
Q 024018 239 YGFVSFKSKKVAETAISA 256 (274)
Q Consensus 239 ~afV~f~~~~~a~~A~~~ 256 (274)
-|-|.|.+.++-.+||.+
T Consensus 415 aGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 415 AGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cceeeecccHHHHHHHhh
Confidence 999999999999999986
No 58
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.64 E-value=9.2e-15 Score=125.45 Aligned_cols=78 Identities=19% Similarity=0.410 Sum_probs=70.3
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeec
Q 024018 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (274)
Q Consensus 99 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 176 (274)
...++||+||.+.+....|.+.|.-.|.|..|.+-.|+.|.++|+|.++|..+-+|-.||..+++.-+..++..++..
T Consensus 214 l~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~~~~~~~~Rl~ 291 (608)
T KOG4212|consen 214 LHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGLFDRRMTVRLD 291 (608)
T ss_pred ccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCCCccccceeecc
Confidence 345699999999999999999999999999999999999999999999999999999999999887777777766653
No 59
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=2.4e-15 Score=120.13 Aligned_cols=82 Identities=24% Similarity=0.466 Sum_probs=78.3
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCC-CCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeec
Q 024018 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (274)
Q Consensus 98 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~-~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 176 (274)
.+.++|.|.||+.+++|++|+++|..||.|..+.+.+|+. |.++|||||.|.+.++|.+||+.|||.-++.-.|+|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 3678899999999999999999999999999999999985 999999999999999999999999999999999999999
Q ss_pred ccc
Q 024018 177 KIK 179 (274)
Q Consensus 177 ~~~ 179 (274)
+++
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 875
No 60
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.62 E-value=2.9e-15 Score=122.99 Aligned_cols=78 Identities=22% Similarity=0.338 Sum_probs=71.9
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeecccc
Q 024018 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179 (274)
Q Consensus 100 ~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 179 (274)
.++|||+|||+.+++++|+++|+.||.|.+|.|+.+.. .+|||||+|.++++|+.|+. |+|..|.|+.|+|.++...
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~--~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE--RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC--CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCC
Confidence 57899999999999999999999999999999988753 47999999999999999996 9999999999999998754
Q ss_pred c
Q 024018 180 K 180 (274)
Q Consensus 180 ~ 180 (274)
.
T Consensus 81 ~ 81 (260)
T PLN03120 81 Q 81 (260)
T ss_pred C
Confidence 3
No 61
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.61 E-value=5.3e-15 Score=99.56 Aligned_cols=70 Identities=30% Similarity=0.441 Sum_probs=65.0
Q ss_pred eEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEE
Q 024018 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIA 268 (274)
Q Consensus 197 l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~ 268 (274)
|||+|||..+++++|+++|+. +|.|..+.+..+++ |.++|+|||+|.+.++|.+|++.++|..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~-~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSR-FGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTT-SSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHh-cCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999999999998 89999999999877 89999999999999999999999999999999985
No 62
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.61 E-value=2.1e-15 Score=125.09 Aligned_cols=76 Identities=29% Similarity=0.478 Sum_probs=71.9
Q ss_pred ccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 024018 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSYL 272 (274)
Q Consensus 194 ~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a 272 (274)
.++|+|.|||+...|.||+..|++ ||.|.+|.|+.+.. -+||||||.|++.+||++|-++|||..|.||+|+|..|
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~k-fG~VldVEIIfNER--GSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEK-FGKVLDVEIIFNER--GSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNA 171 (376)
T ss_pred CceeEeecCCccccCccHHHHHHh-hCceeeEEEEeccC--CCCccceEEecChhhHHHHHHHhhcceeeceEEEEecc
Confidence 578999999999999999999999 99999999998864 48999999999999999999999999999999999865
No 63
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=3.3e-15 Score=119.32 Aligned_cols=81 Identities=23% Similarity=0.294 Sum_probs=78.0
Q ss_pred CCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 024018 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271 (274)
Q Consensus 192 ~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~ 271 (274)
.+..+|-|.||+.++++++|+++|.+ ||.|.++.+.+|..||.++|||||.|.+.++|.+||+.|||.-++.-.|+|+|
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~-fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEw 265 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRP-FGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEW 265 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhc-cCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEe
Confidence 35688999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred ee
Q 024018 272 LY 273 (274)
Q Consensus 272 a~ 273 (274)
++
T Consensus 266 sk 267 (270)
T KOG0122|consen 266 SK 267 (270)
T ss_pred cC
Confidence 86
No 64
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.59 E-value=2.1e-15 Score=117.49 Aligned_cols=79 Identities=27% Similarity=0.355 Sum_probs=76.8
Q ss_pred ccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEee
Q 024018 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSYLY 273 (274)
Q Consensus 194 ~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a~ 273 (274)
...|.|-||.+.++.++|+.+|++ ||.|.+|.|.+|..|+.++|||||.|.+..||++|+++|+|..++|+.|+|.+|+
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFek-YG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEK-YGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHH-hCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 578999999999999999999999 9999999999999999999999999999999999999999999999999999886
No 65
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.59 E-value=4.6e-15 Score=107.03 Aligned_cols=79 Identities=20% Similarity=0.310 Sum_probs=75.6
Q ss_pred ccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEee
Q 024018 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSYLY 273 (274)
Q Consensus 194 ~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a~ 273 (274)
+++|||+||.+.++|++|.++|+. .|.|..|.+-.|..+.++-|||||+|.+.++|..|++-++|+.++.+.|+|.|..
T Consensus 36 S~tvyVgNlSfyttEEqiyELFs~-cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 36 SCTVYVGNLSFYTTEEQIYELFSK-CGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred cceEEEeeeeeeecHHHHHHHHHh-ccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 689999999999999999999998 9999999998898888999999999999999999999999999999999999863
No 66
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.58 E-value=4.1e-15 Score=125.65 Aligned_cols=168 Identities=18% Similarity=0.287 Sum_probs=130.5
Q ss_pred CeEEEeCCCCCCCHHHHHHHHhc----cCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeec
Q 024018 101 TRLVAQNVPWTSTHEDIRALFEQ----HGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (274)
Q Consensus 101 ~~l~v~nLp~~~t~~~L~~~f~~----~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 176 (274)
-.|.+++||+++++.|+.+||.. -|..+.|.++...+|+..|-|||.|..+++|..|+.. |...++.|.|.+..+
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElFRS 240 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELFRS 240 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHHHH
Confidence 35788999999999999999963 2346788888888999999999999999999999985 777788787777665
Q ss_pred ccccC-------C-----C--CCC--------CCCCCCCccceEEecCCccccHHHHHHHHhhcCCceEE--EEEEEcCC
Q 024018 177 KIKKK-------N-----P--FPP--------VQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVS--AEVIFHDN 232 (274)
Q Consensus 177 ~~~~~-------~-----~--~~~--------~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~--~~i~~~~~ 232 (274)
....- . . ..+ .........+|.+++||+..+.++|-+||.+|.-.|.. |.++.+.
T Consensus 241 TaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~- 319 (508)
T KOG1365|consen 241 TAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG- 319 (508)
T ss_pred hHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC-
Confidence 43210 0 0 000 00112225789999999999999999999994334444 4555544
Q ss_pred CCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 024018 233 PRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALS 270 (274)
Q Consensus 233 ~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~ 270 (274)
.|++.|-|||+|.+.++|..|....+++..++|.|+|-
T Consensus 320 qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvf 357 (508)
T KOG1365|consen 320 QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVF 357 (508)
T ss_pred CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEe
Confidence 48999999999999999999999988888889988873
No 67
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=7.3e-15 Score=111.73 Aligned_cols=79 Identities=19% Similarity=0.377 Sum_probs=73.5
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeeccc
Q 024018 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178 (274)
Q Consensus 99 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 178 (274)
..++||||||+..+++.||...|..||++..|.|-.. +.|||||+|+++.+|+.|+..|+|..|.|..|+|+.+..
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 4678999999999999999999999999999988775 488999999999999999999999999999999999987
Q ss_pred ccC
Q 024018 179 KKK 181 (274)
Q Consensus 179 ~~~ 181 (274)
...
T Consensus 85 ~~r 87 (195)
T KOG0107|consen 85 RPR 87 (195)
T ss_pred Ccc
Confidence 655
No 68
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.57 E-value=5.1e-14 Score=121.31 Aligned_cols=120 Identities=22% Similarity=0.282 Sum_probs=98.1
Q ss_pred EECCHHHHHHHHHHcCCCeecCcEEEEeecccccCCCCCC-CCCCCCCccceEEecCCccccHHHHHHHHhhcCCceEEE
Q 024018 147 TMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPP-VQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSA 225 (274)
Q Consensus 147 ~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~~~~~-~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~ 225 (274)
...+.++|.++|..-. |..|.|+....+-..+.+. .......++.|||+.||.++.|++|.-+|++ .|.|-++
T Consensus 40 ~~~~~eaal~al~E~t-----gy~l~ve~gqrk~ggPpP~weg~~p~~G~EVfvGkIPrD~~EdeLvplfEk-iG~I~el 113 (506)
T KOG0117|consen 40 GVQSEEAALKALLERT-----GYTLVVENGQRKYGGPPPGWEGPPPPRGCEVFVGKIPRDVFEDELVPLFEK-IGKIYEL 113 (506)
T ss_pred ccccHHHHHHHHHHhc-----CceEEEeccccccCCCCCcccCCCCCCCceEEecCCCccccchhhHHHHHh-ccceeeE
Confidence 3445788888876533 4567777776665444333 2223355789999999999999999999999 8999999
Q ss_pred EEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeC-CeEEEEEEe
Q 024018 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM-CLVIALSYL 272 (274)
Q Consensus 226 ~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~-g~~i~v~~a 272 (274)
+++.|+.+|.+||||||.|+++++|++|++.||+++|. |+.|.|+.+
T Consensus 114 RLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~S 161 (506)
T KOG0117|consen 114 RLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVS 161 (506)
T ss_pred EEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEe
Confidence 99999999999999999999999999999999999997 888888754
No 69
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.57 E-value=1.3e-14 Score=123.60 Aligned_cols=168 Identities=18% Similarity=0.278 Sum_probs=131.4
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCC--CeecCcEEEEe
Q 024018 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLES--YEFEGRTLKVN 174 (274)
Q Consensus 97 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~--~~~~g~~i~v~ 174 (274)
...++.|+++|||++++|+||..++..||.|..+.+.+. +..||++|.+.+.|..-+..+.. -.++|++|.|.
T Consensus 25 ~~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkG-----knQAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq 99 (492)
T KOG1190|consen 25 AEPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKG-----KNQAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQ 99 (492)
T ss_pred cCCcceeEeccCCccccHHHHHHhcccccceeeeeeecc-----chhhhhhhcchhhhhheeecccccCccccCcceeeh
Confidence 346678999999999999999999999999999988754 44899999999998885554443 56789999998
Q ss_pred ecccccCCCC-------------------------CC------CCCCCCCccceEEecCCccccHHHHHHHHhhcCCceE
Q 024018 175 YAKIKKKNPF-------------------------PP------VQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVV 223 (274)
Q Consensus 175 ~~~~~~~~~~-------------------------~~------~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~ 223 (274)
++....-... .. ......+--.++|+|+-+.++-|-|..+|++ ||.|.
T Consensus 100 ~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~-fG~Vl 178 (492)
T KOG1190|consen 100 YSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSK-FGFVL 178 (492)
T ss_pred hhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhh-cceeE
Confidence 8764311100 00 0011112235778999999999999999999 99999
Q ss_pred EEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeC--CeEEEEEEeeC
Q 024018 224 SAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM--CLVIALSYLYL 274 (274)
Q Consensus 224 ~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~--g~~i~v~~a~l 274 (274)
++..+.... .=.|+|.|.+.+.|..|..+|+|+-|. .+.|+|.|++|
T Consensus 179 KIiTF~Knn----~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Skl 227 (492)
T KOG1190|consen 179 KIITFTKNN----GFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKL 227 (492)
T ss_pred EEEEEeccc----chhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhc
Confidence 987765543 124999999999999999999999886 48999999875
No 70
>PLN03213 repressor of silencing 3; Provisional
Probab=99.56 E-value=1.3e-14 Score=126.31 Aligned_cols=81 Identities=20% Similarity=0.316 Sum_probs=73.4
Q ss_pred ccCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCH--HHHHHHHHHcCCCeecCcEEEE
Q 024018 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP--DEATAALNNLESYEFEGRTLKV 173 (274)
Q Consensus 96 ~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~--~~a~~a~~~l~~~~~~g~~i~v 173 (274)
......+||||||++.+++++|+..|..||.|.+|.|++. +| +|||||+|.+. +++.+||..|||..+.||.|+|
T Consensus 6 s~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE-TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKV 82 (759)
T PLN03213 6 SGGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT-KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRL 82 (759)
T ss_pred cCCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc-cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEE
Confidence 3445678999999999999999999999999999999843 46 99999999987 7899999999999999999999
Q ss_pred eecccc
Q 024018 174 NYAKIK 179 (274)
Q Consensus 174 ~~~~~~ 179 (274)
+.+++.
T Consensus 83 NKAKP~ 88 (759)
T PLN03213 83 EKAKEH 88 (759)
T ss_pred eeccHH
Confidence 999865
No 71
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.56 E-value=3.1e-14 Score=115.16 Aligned_cols=79 Identities=14% Similarity=0.141 Sum_probs=71.7
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeeccc
Q 024018 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178 (274)
Q Consensus 99 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 178 (274)
...+|||+||++.+|+++|+++|+.||.|.+|.|+++ +..+++|||+|.++++|+.|+. |+|..|.|+.|.|..+..
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D--~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS--GEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC--CCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCcc
Confidence 4578999999999999999999999999999999987 4556899999999999999997 999999999999998765
Q ss_pred cc
Q 024018 179 KK 180 (274)
Q Consensus 179 ~~ 180 (274)
..
T Consensus 81 y~ 82 (243)
T PLN03121 81 YE 82 (243)
T ss_pred cc
Confidence 43
No 72
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.56 E-value=2.6e-14 Score=117.43 Aligned_cols=75 Identities=24% Similarity=0.367 Sum_probs=69.7
Q ss_pred ccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEee
Q 024018 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSYLY 273 (274)
Q Consensus 194 ~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a~ 273 (274)
.++|||+|||+.+++++|+++|+. ||.|.++.|+.+.. .+|||||+|++.++|..|+. |+|..|.|+.|+|.++.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~-~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSF-SGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEecc
Confidence 578999999999999999999997 99999999998864 47999999999999999996 99999999999999874
No 73
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.55 E-value=3.1e-14 Score=98.96 Aligned_cols=83 Identities=28% Similarity=0.404 Sum_probs=74.4
Q ss_pred ccCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEee
Q 024018 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (274)
Q Consensus 96 ~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 175 (274)
+.+..+.|||.|||+.+|.++..++|++||.|+.|++--.+ .-+|.|||.|++..+|.+|+++|+|..+.++.+.|.+
T Consensus 14 ppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k--~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vly 91 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK--ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLY 91 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc--CcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEe
Confidence 34466789999999999999999999999999999986543 3489999999999999999999999999999999999
Q ss_pred ccccc
Q 024018 176 AKIKK 180 (274)
Q Consensus 176 ~~~~~ 180 (274)
..+..
T Consensus 92 yq~~~ 96 (124)
T KOG0114|consen 92 YQPED 96 (124)
T ss_pred cCHHH
Confidence 87654
No 74
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.55 E-value=6.9e-16 Score=117.89 Aligned_cols=83 Identities=25% Similarity=0.438 Sum_probs=76.6
Q ss_pred ccCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecC-CCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEe
Q 024018 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174 (274)
Q Consensus 96 ~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 174 (274)
+-.++.-|||||||+..||.+|.-.|++||+|++|.+++|+ +|+++||||+.|++..+...|+..|||..+.||.|+|.
T Consensus 31 ~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVD 110 (219)
T KOG0126|consen 31 EYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVD 110 (219)
T ss_pred hcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEee
Confidence 34466779999999999999999999999999999999998 59999999999999999999999999999999999997
Q ss_pred eccc
Q 024018 175 YAKI 178 (274)
Q Consensus 175 ~~~~ 178 (274)
....
T Consensus 111 Hv~~ 114 (219)
T KOG0126|consen 111 HVSN 114 (219)
T ss_pred eccc
Confidence 7543
No 75
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.55 E-value=1.5e-14 Score=105.36 Aligned_cols=83 Identities=17% Similarity=0.367 Sum_probs=79.4
Q ss_pred CCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 024018 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALS 270 (274)
Q Consensus 191 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~ 270 (274)
..-++.|||.++...+++++|.+.|.. ||.|+.+.+-.|..||-.+|||+|+|++.++|+.|+.+|||..+.|..|.|.
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~d-yGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VD 147 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFAD-YGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVD 147 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhh-cccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEE
Confidence 344789999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred EeeC
Q 024018 271 YLYL 274 (274)
Q Consensus 271 ~a~l 274 (274)
|+++
T Consensus 148 w~Fv 151 (170)
T KOG0130|consen 148 WCFV 151 (170)
T ss_pred EEEe
Confidence 9985
No 76
>smart00362 RRM_2 RNA recognition motif.
Probab=99.54 E-value=6.2e-14 Score=93.90 Aligned_cols=72 Identities=29% Similarity=0.588 Sum_probs=67.4
Q ss_pred eEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEe
Q 024018 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174 (274)
Q Consensus 102 ~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 174 (274)
+|||+|||..+++++|+++|+.||.|..+.+..+. +.++|+|||+|.+.++|.+|++.++|..+.|+.|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT-GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 48999999999999999999999999999998776 7789999999999999999999999999999998873
No 77
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.54 E-value=1.2e-14 Score=113.36 Aligned_cols=83 Identities=28% Similarity=0.512 Sum_probs=77.1
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecC-CCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeec
Q 024018 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (274)
Q Consensus 98 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 176 (274)
..-..|.|-||.+.++.++|+.+|++||.|.+|.|.+|+ ++.++|||||.|.+..+|+.|++.|+|.+|+|+.|.|.+|
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 355679999999999999999999999999999999998 5899999999999999999999999999999999999998
Q ss_pred cccc
Q 024018 177 KIKK 180 (274)
Q Consensus 177 ~~~~ 180 (274)
.-..
T Consensus 91 rygr 94 (256)
T KOG4207|consen 91 RYGR 94 (256)
T ss_pred hcCC
Confidence 7543
No 78
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.54 E-value=6.5e-14 Score=114.93 Aligned_cols=82 Identities=18% Similarity=0.230 Sum_probs=78.1
Q ss_pred CCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 024018 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALS 270 (274)
Q Consensus 191 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~ 270 (274)
..|-++|||+-|+++++|..|+..|+. ||.|+.+.+++|..||.++|||||+|+++-+...|.+..+|..|+|+.|.|.
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~-YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VD 176 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEK-YGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVD 176 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHh-cCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEE
Confidence 356799999999999999999999998 9999999999999999999999999999999999999999999999999998
Q ss_pred Eee
Q 024018 271 YLY 273 (274)
Q Consensus 271 ~a~ 273 (274)
+.+
T Consensus 177 vER 179 (335)
T KOG0113|consen 177 VER 179 (335)
T ss_pred ecc
Confidence 764
No 79
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=4.2e-14 Score=107.63 Aligned_cols=74 Identities=24% Similarity=0.311 Sum_probs=69.1
Q ss_pred ccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEee
Q 024018 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSYLY 273 (274)
Q Consensus 194 ~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a~ 273 (274)
.++|||+||+..+++.||...|.. ||.+..|.|... +.|||||||+++.||.+|+..|+|..|.|..|+|+++.
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~-yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSK-YGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHh-cCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 678999999999999999999997 999999999874 46899999999999999999999999999999999763
No 80
>smart00362 RRM_2 RNA recognition motif.
Probab=99.50 E-value=2e-13 Score=91.39 Aligned_cols=72 Identities=29% Similarity=0.439 Sum_probs=67.2
Q ss_pred ceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 024018 196 NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALS 270 (274)
Q Consensus 196 ~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~ 270 (274)
+|+|+|||..+++++|+++|+. ||.|.++.+..+. +.++|+|||+|.+.++|.+|++.++|..+.|+.|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~-~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSK-FGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHh-cCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 4899999999999999999998 9999999988776 6789999999999999999999999999999999874
No 81
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=1.6e-14 Score=113.68 Aligned_cols=85 Identities=29% Similarity=0.475 Sum_probs=79.6
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCC-CCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEee
Q 024018 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (274)
Q Consensus 97 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~-~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 175 (274)
...+++||||+|...++|.-|...|-.||.|.+|.++.|.. ++++|||||+|...|+|.+||+.||+..|.||.|+|++
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 34678999999999999999999999999999999999874 89999999999999999999999999999999999999
Q ss_pred cccccC
Q 024018 176 AKIKKK 181 (274)
Q Consensus 176 ~~~~~~ 181 (274)
+++.+-
T Consensus 87 AkP~ki 92 (298)
T KOG0111|consen 87 AKPEKI 92 (298)
T ss_pred cCCccc
Confidence 998644
No 82
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=1.5e-13 Score=112.87 Aligned_cols=83 Identities=18% Similarity=0.373 Sum_probs=77.9
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecC-CCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEee
Q 024018 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (274)
Q Consensus 97 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 175 (274)
...-+||||+-|+++++|..|+..|+.||+|+.|.|++++ +|+++|||||+|.++.+..+|.+..+|.+|+|+.|.|.+
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 3567899999999999999999999999999999999996 699999999999999999999999999999999999988
Q ss_pred cccc
Q 024018 176 AKIK 179 (274)
Q Consensus 176 ~~~~ 179 (274)
....
T Consensus 178 ERgR 181 (335)
T KOG0113|consen 178 ERGR 181 (335)
T ss_pred cccc
Confidence 7655
No 83
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.49 E-value=4.1e-13 Score=90.38 Aligned_cols=74 Identities=32% Similarity=0.598 Sum_probs=69.6
Q ss_pred eEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEee
Q 024018 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (274)
Q Consensus 102 ~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 175 (274)
+|+|+|||+.+++++|+++|+.+|.|..+.+..+..+.++|+|||+|.+.++|..|++.+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 48999999999999999999999999999999887778899999999999999999999999999999998864
No 84
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=7.7e-14 Score=124.38 Aligned_cols=171 Identities=22% Similarity=0.357 Sum_probs=142.7
Q ss_pred ccCCCCeEEEeCCCCCCCHHHHHHHHhcc-----------Cc-eEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCC
Q 024018 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQH-----------GT-VLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLES 163 (274)
Q Consensus 96 ~~~~~~~l~v~nLp~~~t~~~L~~~f~~~-----------G~-v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~ 163 (274)
.....+.+||+++++.++++....+|..- |+ +..+.+-.. +.|||++|.+.++|..|+. +++
T Consensus 171 ~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~-----~nfa~ie~~s~~~at~~~~-~~~ 244 (500)
T KOG0120|consen 171 ATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLE-----KNFAFIEFRSISEATEAMA-LDG 244 (500)
T ss_pred hhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeeccc-----ccceeEEecCCCchhhhhc-ccc
Confidence 34566789999999999999999999753 44 666666543 8899999999999999988 799
Q ss_pred CeecCcEEEEeecccccCCCCC--------------CCCCCCCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEE
Q 024018 164 YEFEGRTLKVNYAKIKKKNPFP--------------PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIF 229 (274)
Q Consensus 164 ~~~~g~~i~v~~~~~~~~~~~~--------------~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~ 229 (274)
..+.|+.+++..-......+.. ...........++|++||..+++++++++.+. ||.+....++.
T Consensus 245 ~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~-fg~lk~f~lv~ 323 (500)
T KOG0120|consen 245 IIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDS-FGPLKAFRLVK 323 (500)
T ss_pred hhhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHh-cccchhheeec
Confidence 9999998888765544332211 11222333578999999999999999999998 99999999999
Q ss_pred cCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEee
Q 024018 230 HDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSYLY 273 (274)
Q Consensus 230 ~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a~ 273 (274)
+..+|.++||||.+|.+......|+..|||..++++.|.|..|.
T Consensus 324 d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~ 367 (500)
T KOG0120|consen 324 DSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAI 367 (500)
T ss_pred ccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhh
Confidence 99999999999999999999999999999999999999998764
No 85
>PLN03213 repressor of silencing 3; Provisional
Probab=99.48 E-value=1.6e-13 Score=119.68 Aligned_cols=76 Identities=16% Similarity=0.206 Sum_probs=70.4
Q ss_pred CccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCH--HHHHHHHHHhCCceeCCeEEEEE
Q 024018 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSK--KVAETAISAFQGKVIMCLVIALS 270 (274)
Q Consensus 193 ~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~--~~a~~A~~~l~g~~i~g~~i~v~ 270 (274)
.+.+||||||++.+++++|+..|.. ||.|.+|.|+ +.+| ||||||+|.+. .++.+||..|||..++|+.|+|.
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSe-FGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSP-MGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 3578999999999999999999999 9999999999 4456 99999999987 78999999999999999999999
Q ss_pred Eee
Q 024018 271 YLY 273 (274)
Q Consensus 271 ~a~ 273 (274)
-|+
T Consensus 84 KAK 86 (759)
T PLN03213 84 KAK 86 (759)
T ss_pred ecc
Confidence 886
No 86
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.48 E-value=4.4e-15 Score=113.53 Aligned_cols=77 Identities=18% Similarity=0.364 Sum_probs=74.7
Q ss_pred ccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 024018 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271 (274)
Q Consensus 194 ~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~ 271 (274)
+.-|||+|||+.++|.||..+|++ ||.|..|.+++|.+||.++||||+-|++..+..-|+..|||..|.||.|+|.+
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSq-yGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQ-YGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeec-cCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 567999999999999999999999 99999999999999999999999999999999999999999999999999975
No 87
>smart00360 RRM RNA recognition motif.
Probab=99.48 E-value=3e-13 Score=90.20 Aligned_cols=71 Identities=27% Similarity=0.438 Sum_probs=66.9
Q ss_pred EecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 024018 199 IANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALS 270 (274)
Q Consensus 199 V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~ 270 (274)
|+|||..+++++|+++|+. ||.|..+.+..++.++.++|+|||+|.+.++|..|++.|+|..++|+.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~-~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSK-FGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHh-hCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 5789999999999999998 9999999999888788999999999999999999999999999999999874
No 88
>smart00360 RRM RNA recognition motif.
Probab=99.46 E-value=4.4e-13 Score=89.35 Aligned_cols=70 Identities=34% Similarity=0.610 Sum_probs=65.4
Q ss_pred EeCCCCCCCHHHHHHHHhccCceEEEEEeecCC-CCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEe
Q 024018 105 AQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174 (274)
Q Consensus 105 v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~-~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 174 (274)
|+|||..+++++|+++|+.||.|..+.+..++. +.++|+|||+|.+.++|.+|++.+++..++|+.|+|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 579999999999999999999999999988774 8899999999999999999999999999999998874
No 89
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.46 E-value=4.1e-13 Score=93.44 Aligned_cols=75 Identities=17% Similarity=0.241 Sum_probs=69.0
Q ss_pred ccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 024018 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSYL 272 (274)
Q Consensus 194 ~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a 272 (274)
++.|||+|||+.++.|++.++|.+ ||.|..++|-.... .+|-|||.|++..+|.+|++.|+|..+.++.+.|-|-
T Consensus 18 nriLyirNLp~~ITseemydlFGk-yg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyy 92 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGK-YGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYY 92 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhc-ccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCceEEEEec
Confidence 678999999999999999999999 99999999865554 4899999999999999999999999999999998763
No 90
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.45 E-value=6.8e-13 Score=107.43 Aligned_cols=73 Identities=26% Similarity=0.343 Sum_probs=67.7
Q ss_pred ccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 024018 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271 (274)
Q Consensus 194 ~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~ 271 (274)
+.+|+|+||++.+++++|+++|+. ||.|.+|.++++. ...++|||+|+++++|..|+. |+|..|.|+.|.|.-
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~-~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~ 77 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSH-CGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITR 77 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHh-cCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEe
Confidence 689999999999999999999997 9999999999884 456899999999999999996 899999999999875
No 91
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.44 E-value=5.7e-13 Score=112.88 Aligned_cols=79 Identities=28% Similarity=0.439 Sum_probs=76.1
Q ss_pred ccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEee
Q 024018 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSYLY 273 (274)
Q Consensus 194 ~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a~ 273 (274)
..+|||+|||..+++++|+++|.. ||.|..+.+..+..+|.++|||||+|.+.++|..|++.++|..+.|+.|.|.+++
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~-~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKK-FGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHh-cCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 689999999999999999999998 9999999999998899999999999999999999999999999999999999864
No 92
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.44 E-value=2.5e-13 Score=120.41 Aligned_cols=81 Identities=30% Similarity=0.600 Sum_probs=77.0
Q ss_pred CeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCC-CCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeecccc
Q 024018 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179 (274)
Q Consensus 101 ~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~-~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 179 (274)
+.|||||+|+++++++|.++|+..|.|.+++++.|++ |+++||||++|.+.++|..|++.|||..+.||+|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 7799999999999999999999999999999999985 999999999999999999999999999999999999998765
Q ss_pred cC
Q 024018 180 KK 181 (274)
Q Consensus 180 ~~ 181 (274)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 43
No 93
>smart00361 RRM_1 RNA recognition motif.
Probab=99.43 E-value=9.5e-13 Score=88.47 Aligned_cols=62 Identities=15% Similarity=0.195 Sum_probs=55.7
Q ss_pred HHHHHHHHh----hcCCceEEEE-EEEcCCC--CCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 024018 208 AKDLREFFI----SEGWDVVSAE-VIFHDNP--RRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALS 270 (274)
Q Consensus 208 ~~~l~~~f~----~~~G~v~~~~-i~~~~~~--g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~ 270 (274)
+++|+++|+ . ||.|.++. +..++.+ |.++|||||+|.+.++|.+|++.|||..+.|+.|+++
T Consensus 2 ~~~l~~~~~~~~~~-fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEY-FGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHh-cCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 578888888 8 99999996 7777666 8899999999999999999999999999999999873
No 94
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.43 E-value=3.3e-13 Score=119.63 Aligned_cols=77 Identities=22% Similarity=0.460 Sum_probs=75.7
Q ss_pred cceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 024018 195 FNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSYL 272 (274)
Q Consensus 195 ~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a 272 (274)
+.+||+|+|+++++++|.++|+. .|.|.+++++.|+.+|+++||||++|.+.++|.+|++.|||.++.||+|+|.|+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~-~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~ 95 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSG-VGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYA 95 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhc-cCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecc
Confidence 78999999999999999999998 999999999999999999999999999999999999999999999999999997
No 95
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.42 E-value=2.5e-12 Score=86.49 Aligned_cols=74 Identities=30% Similarity=0.505 Sum_probs=68.7
Q ss_pred ceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 024018 196 NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271 (274)
Q Consensus 196 ~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~ 271 (274)
+|+|+|||..+++++|+++|+. +|.|..+.+..++.+ .++|+|||+|.+.++|..|++.+++..+.|+.|.|.|
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~-~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSK-FGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHh-cCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999998 899999999987754 6789999999999999999999999999999999875
No 96
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.42 E-value=2.1e-11 Score=103.20 Aligned_cols=163 Identities=17% Similarity=0.160 Sum_probs=130.9
Q ss_pred ccCCCCeEEEeCCCCC-CCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEe
Q 024018 96 EEYSKTRLVAQNVPWT-STHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174 (274)
Q Consensus 96 ~~~~~~~l~v~nLp~~-~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 174 (274)
...+...++|.+|... ++.+-|-++|-.||.|+.|++++.+ .|.|.|++.+..+.++|+..||+..+.|.+|.|.
T Consensus 283 g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~ 358 (494)
T KOG1456|consen 283 GGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVC 358 (494)
T ss_pred CCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc----cceeEEEcCcHHHHHHHHHHhccCccccceEEEe
Confidence 3446788999999875 6889999999999999999999876 6689999999999999999999999999999999
Q ss_pred ecccccCCCCC----------------------------CCCCCCCCccceEEecCCccccHHHHHHHHhhcCCceEEEE
Q 024018 175 YAKIKKKNPFP----------------------------PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAE 226 (274)
Q Consensus 175 ~~~~~~~~~~~----------------------------~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~ 226 (274)
.++..--.+.. .......+++.|..-|.|..++|+.+.++|...--.-.+++
T Consensus 359 ~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svk 438 (494)
T KOG1456|consen 359 VSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVK 438 (494)
T ss_pred eccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceEE
Confidence 98754221110 02234456789999999999999999999997433445566
Q ss_pred EEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCC
Q 024018 227 VIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC 264 (274)
Q Consensus 227 i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g 264 (274)
|+..+ +.+ ..-+.+||++.++|..||.+||...|.+
T Consensus 439 vFp~k-ser-SssGllEfe~~s~Aveal~~~NH~pi~~ 474 (494)
T KOG1456|consen 439 VFPLK-SER-SSSGLLEFENKSDAVEALMKLNHYPIEG 474 (494)
T ss_pred eeccc-ccc-cccceeeeehHHHHHHHHHHhccccccC
Confidence 65444 222 3458999999999999999999998874
No 97
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.42 E-value=4.6e-12 Score=107.08 Aligned_cols=162 Identities=15% Similarity=0.181 Sum_probs=129.0
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHc--CCCeecCcEEEEeec
Q 024018 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNL--ESYEFEGRTLKVNYA 176 (274)
Q Consensus 99 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l--~~~~~~g~~i~v~~~ 176 (274)
.+-.|+|++|-..++|.+|.+.++.||+|..+.++.. +..|.|+|++.+.|..++..- +...+.|+.--++++
T Consensus 30 ~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~-----~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~NyS 104 (494)
T KOG1456|consen 30 PSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPH-----KRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNYS 104 (494)
T ss_pred CCceEEEeccccccchhHHHHHHhcCCceEEEEeccc-----cceeeeeeccccchhhheehhccCcccccCchhhcccc
Confidence 3456999999999999999999999999999988765 778999999999999988632 345667887777777
Q ss_pred ccccCCCCCCCCCCCCCccceEEecCC--ccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHH
Q 024018 177 KIKKKNPFPPVQPKPFATFNLFIANLS--FEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAI 254 (274)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~l~V~nlp--~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~ 254 (274)
..+.-... ......+...|.+.-|. +.++.|-|..++.. .|+|.+|.|++.. |. .|.|||++.+.|++|.
T Consensus 105 tsq~i~R~--g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp-~GkVlRIvIfkkn--gV---QAmVEFdsv~~AqrAk 176 (494)
T KOG1456|consen 105 TSQCIERP--GDESATPNKVLLFTILNPQYPITVDVLYTICNP-QGKVLRIVIFKKN--GV---QAMVEFDSVEVAQRAK 176 (494)
T ss_pred hhhhhccC--CCCCCCCCeEEEEEeecCccccchhhhhhhcCC-CCceEEEEEEecc--ce---eeEEeechhHHHHHHH
Confidence 54322211 12223334555555443 78899999999999 9999999888763 33 5999999999999999
Q ss_pred HHhCCceeC--CeEEEEEEee
Q 024018 255 SAFQGKVIM--CLVIALSYLY 273 (274)
Q Consensus 255 ~~l~g~~i~--g~~i~v~~a~ 273 (274)
.+|||-.|. .+.|+|+||+
T Consensus 177 ~alNGADIYsGCCTLKIeyAk 197 (494)
T KOG1456|consen 177 AALNGADIYSGCCTLKIEYAK 197 (494)
T ss_pred hhcccccccccceeEEEEecC
Confidence 999999886 5899999996
No 98
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.41 E-value=2e-12 Score=82.90 Aligned_cols=56 Identities=25% Similarity=0.375 Sum_probs=50.4
Q ss_pred HHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 024018 211 LREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSYL 272 (274)
Q Consensus 211 l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a 272 (274)
|+++|++ ||.|.++.+..+. +++|||+|.+.++|.+|++.|||..++|++|+|+||
T Consensus 1 L~~~f~~-fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSK-FGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTT-TS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCC-cccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 6789999 9999999886443 589999999999999999999999999999999997
No 99
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=1.7e-13 Score=107.92 Aligned_cols=79 Identities=22% Similarity=0.336 Sum_probs=76.8
Q ss_pred ccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEee
Q 024018 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSYLY 273 (274)
Q Consensus 194 ~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a~ 273 (274)
.++|||++|...++|.-|...|=+ ||.|.+|.++.|..+++.||||||+|+-.+||..||..||+.++.||.|+|.||+
T Consensus 10 KrtlYVGGladeVtekvLhaAFIP-FGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 10 KRTLYVGGLADEVTEKVLHAAFIP-FGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred ceeEEeccchHHHHHHHHHhcccc-ccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 578999999999999999999999 9999999999999999999999999999999999999999999999999999986
No 100
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.40 E-value=6.5e-13 Score=96.82 Aligned_cols=83 Identities=25% Similarity=0.372 Sum_probs=77.3
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecC-CCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeecc
Q 024018 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (274)
Q Consensus 99 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 177 (274)
..-.|||.++...+++++|.+.|..||+|.++.+-.|+ +|-.+|||+|+|.+.++|.+|+..+||..|.|+.|.|.|+-
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCF 150 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEE
Confidence 45569999999999999999999999999999998887 59999999999999999999999999999999999999987
Q ss_pred cccC
Q 024018 178 IKKK 181 (274)
Q Consensus 178 ~~~~ 181 (274)
.+..
T Consensus 151 v~gp 154 (170)
T KOG0130|consen 151 VKGP 154 (170)
T ss_pred ecCC
Confidence 6654
No 101
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.38 E-value=2.8e-12 Score=82.25 Aligned_cols=56 Identities=39% Similarity=0.684 Sum_probs=51.0
Q ss_pred HHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeec
Q 024018 117 IRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (274)
Q Consensus 117 L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 176 (274)
|+++|++||+|..+.+..+. +++|||+|.+.++|.+|++.|||..++|++|+|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999999997653 599999999999999999999999999999999986
No 102
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.36 E-value=5.4e-12 Score=110.31 Aligned_cols=166 Identities=23% Similarity=0.316 Sum_probs=127.0
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCceEE-EEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeecc
Q 024018 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (274)
Q Consensus 99 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~-v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 177 (274)
....|.+++||+.||++||.+||+..-.|.. |.++.+..+++.|-|||.|.+.+.|++|+.. |...++.|.|.|..+.
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRSS 180 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehhH
Confidence 4567999999999999999999998766555 6677788899999999999999999999985 8888888999987664
Q ss_pred cccCCCCC-----------------------------------------------------------------------C
Q 024018 178 IKKKNPFP-----------------------------------------------------------------------P 186 (274)
Q Consensus 178 ~~~~~~~~-----------------------------------------------------------------------~ 186 (274)
........ +
T Consensus 181 ~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~~ 260 (510)
T KOG4211|consen 181 RAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNYP 260 (510)
T ss_pred HHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccccccccccccccccccccC
Confidence 32100000 0
Q ss_pred CC--C----------C-CCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHH
Q 024018 187 VQ--P----------K-PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETA 253 (274)
Q Consensus 187 ~~--~----------~-~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A 253 (274)
.. . . ...+..+..++||+..++.++..+|+.. ....|.|...++ |+..|-|.|+|.+-++|..|
T Consensus 261 ~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl--~p~~v~i~ig~d-Gr~TGEAdveF~t~edav~A 337 (510)
T KOG4211|consen 261 VSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPL--NPYRVHIEIGPD-GRATGEADVEFATGEDAVGA 337 (510)
T ss_pred CCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCC--CceeEEEEeCCC-CccCCcceeecccchhhHhh
Confidence 00 0 0 0112568889999999999999999963 555666666554 88999999999999999999
Q ss_pred HHHhCCceeCCeEEEE
Q 024018 254 ISAFQGKVIMCLVIAL 269 (274)
Q Consensus 254 ~~~l~g~~i~g~~i~v 269 (274)
+.+ ++..+..+.|.+
T Consensus 338 msk-d~anm~hrYVEl 352 (510)
T KOG4211|consen 338 MGK-DGANMGHRYVEL 352 (510)
T ss_pred hcc-CCcccCcceeee
Confidence 986 666666665543
No 103
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.36 E-value=1.6e-12 Score=99.70 Aligned_cols=78 Identities=23% Similarity=0.332 Sum_probs=74.7
Q ss_pred ccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 024018 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSYL 272 (274)
Q Consensus 194 ~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a 272 (274)
..+|||+||+..++++.|+++|-. .|.|..+.+.+|..+...+||||++|.++|+|+.|++.||+-++.|++|+|+-+
T Consensus 9 d~tiyvgnld~kvs~~~l~EL~iq-agpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 9 DATLYVGNLDEKVSEELLYELFIQ-AGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CceEEEecCCHHHHHHHHHHHHHh-cCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 578999999999999999999998 899999999999999999999999999999999999999999999999999864
No 104
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.33 E-value=2.3e-12 Score=98.97 Aligned_cols=76 Identities=18% Similarity=0.268 Sum_probs=69.5
Q ss_pred ccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEee
Q 024018 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSYLY 273 (274)
Q Consensus 194 ~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a~ 273 (274)
.+.|||+|||.++.+.+|.++|-+ ||.|.+|.+...+ ....||||+|++..+|+.||..-+|..++|.+|+|+|++
T Consensus 6 ~~~iyvGNLP~diRekeieDlFyK-yg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 6 SRRIYVGNLPGDIREKEIEDLFYK-YGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred cceEEecCCCcchhhccHHHHHhh-hcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 678999999999999999999998 9999999885443 346799999999999999999999999999999999986
No 105
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.31 E-value=1.2e-11 Score=99.67 Aligned_cols=166 Identities=20% Similarity=0.214 Sum_probs=129.7
Q ss_pred CeEEEeCCCCCCCHHH-H--HHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeecc
Q 024018 101 TRLVAQNVPWTSTHED-I--RALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (274)
Q Consensus 101 ~~l~v~nLp~~~t~~~-L--~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 177 (274)
...+++++-..+..+- | ...|+.+-......++++..+.-.+++|+.|.....-.++-..-+++.++-+.|++-...
T Consensus 97 f~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gt 176 (290)
T KOG0226|consen 97 FRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGT 176 (290)
T ss_pred ccccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeecccc
Confidence 3456666666665544 3 566777766677777777778889999999998888888777666777766665554443
Q ss_pred cccCCCCCCCCCCCCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHh
Q 024018 178 IKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAF 257 (274)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l 257 (274)
...+.. ...-.....+||.+.|..+++++-|...|.+ |-.....++++|..||+++||+||.|.+..++.+|+..|
T Consensus 177 swedPs---l~ew~~~DfRIfcgdlgNevnd~vl~raf~K-fpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem 252 (290)
T KOG0226|consen 177 SWEDPS---LAEWDEDDFRIFCGDLGNEVNDDVLARAFKK-FPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREM 252 (290)
T ss_pred ccCCcc---cccCccccceeecccccccccHHHHHHHHHh-ccchhhccccccccccccccceeeeecCHHHHHHHHHhh
Confidence 332211 1222334688999999999999999999999 888889999999999999999999999999999999999
Q ss_pred CCceeCCeEEEEE
Q 024018 258 QGKVIMCLVIALS 270 (274)
Q Consensus 258 ~g~~i~g~~i~v~ 270 (274)
+|..++.+.|++.
T Consensus 253 ~gkyVgsrpiklR 265 (290)
T KOG0226|consen 253 NGKYVGSRPIKLR 265 (290)
T ss_pred cccccccchhHhh
Confidence 9999999988754
No 106
>smart00361 RRM_1 RNA recognition motif.
Probab=99.31 E-value=1.3e-11 Score=82.98 Aligned_cols=60 Identities=30% Similarity=0.525 Sum_probs=53.2
Q ss_pred HHHHHHHHh----ccCceEEEE-EeecC-C--CCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEE
Q 024018 114 HEDIRALFE----QHGTVLDIE-LSMHS-K--NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKV 173 (274)
Q Consensus 114 ~~~L~~~f~----~~G~v~~v~-~~~~~-~--~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v 173 (274)
+++|+++|+ .||.|.++. +..++ + |.++|||||+|.+.++|.+|++.|||..+.|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578889998 999999985 54443 4 889999999999999999999999999999999976
No 107
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.29 E-value=6.3e-13 Score=104.69 Aligned_cols=142 Identities=17% Similarity=0.213 Sum_probs=120.9
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeeccc
Q 024018 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178 (274)
Q Consensus 99 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 178 (274)
..++|||+|+...++|+-|.++|-+.|+|..|.|..++++..+ ||||.|.++..+.-|++.+||..+.++.+.+.+-..
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G 86 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCG 86 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhcccccC
Confidence 5678999999999999999999999999999999988888888 999999999999999999999999999888776544
Q ss_pred ccCCCCCCCCCCCCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhC
Q 024018 179 KKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ 258 (274)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 258 (274)
.... -|...++++.+...|+. -|.+..+++..+.+ |+.+.++++.+....+.-.++....
T Consensus 87 ~sha------------------pld~r~~~ei~~~v~s~-a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~~P~~~~~y~ 146 (267)
T KOG4454|consen 87 NSHA------------------PLDERVTEEILYEVFSQ-AGPIEGVRIPTDND-GRNRNFGFVTYQRLCAVPFALDLYQ 146 (267)
T ss_pred CCcc------------------hhhhhcchhhheeeecc-cCCCCCcccccccc-CCccCccchhhhhhhcCcHHhhhhc
Confidence 3221 15567788888888887 89999999988877 7899999999998887777777655
Q ss_pred Cce
Q 024018 259 GKV 261 (274)
Q Consensus 259 g~~ 261 (274)
+..
T Consensus 147 ~l~ 149 (267)
T KOG4454|consen 147 GLE 149 (267)
T ss_pred ccC
Confidence 533
No 108
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=7.3e-12 Score=105.21 Aligned_cols=83 Identities=24% Similarity=0.251 Sum_probs=79.1
Q ss_pred CCCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEE
Q 024018 190 KPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIAL 269 (274)
Q Consensus 190 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v 269 (274)
..+|.+.|||..|.+-+++++|.-+|++ ||.|..|.|++|..||.+-.||||+|++.+++.+|.-+|++.-|++++|.|
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSr-FG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHV 313 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSR-FGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHV 313 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhh-cccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEe
Confidence 4556789999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred EEee
Q 024018 270 SYLY 273 (274)
Q Consensus 270 ~~a~ 273 (274)
.|++
T Consensus 314 DFSQ 317 (479)
T KOG0415|consen 314 DFSQ 317 (479)
T ss_pred ehhh
Confidence 9874
No 109
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.22 E-value=6.1e-12 Score=116.81 Aligned_cols=162 Identities=15% Similarity=0.161 Sum_probs=139.2
Q ss_pred hhccCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEE
Q 024018 94 REEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKV 173 (274)
Q Consensus 94 ~~~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v 173 (274)
.++....++||+|||+..+++.+|+..|..+|.|..|.|....-+.-..||||.|.+.+.+-.|...+.+..|....+++
T Consensus 366 ~DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~ 445 (975)
T KOG0112|consen 366 LDDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRI 445 (975)
T ss_pred ccchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccc
Confidence 34566789999999999999999999999999999999976655666779999999999999999989988887666666
Q ss_pred eecccccCCCCCCCCCCCCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHH
Q 024018 174 NYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETA 253 (274)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A 253 (274)
.+..++ ...+..+++++|+..+....+...|.. ||.|..|.+- +..-||+|.|++...|+.|
T Consensus 446 glG~~k-----------st~ttr~~sgglg~w~p~~~l~r~fd~-fGpir~Idy~------hgq~yayi~yes~~~aq~a 507 (975)
T KOG0112|consen 446 GLGQPK-----------STPTTRLQSGGLGPWSPVSRLNREFDR-FGPIRIIDYR------HGQPYAYIQYESPPAAQAA 507 (975)
T ss_pred cccccc-----------cccceeeccCCCCCCChHHHHHHHhhc-cCcceeeecc------cCCcceeeecccCccchhh
Confidence 666542 233678999999999999999999999 9999887663 3356999999999999999
Q ss_pred HHHhCCceeCC--eEEEEEEee
Q 024018 254 ISAFQGKVIMC--LVIALSYLY 273 (274)
Q Consensus 254 ~~~l~g~~i~g--~~i~v~~a~ 273 (274)
+..|.|..++| ++++|.||.
T Consensus 508 ~~~~rgap~G~P~~r~rvdla~ 529 (975)
T KOG0112|consen 508 THDMRGAPLGGPPRRLRVDLAS 529 (975)
T ss_pred HHHHhcCcCCCCCccccccccc
Confidence 99999999985 789999875
No 110
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.21 E-value=2.7e-11 Score=98.30 Aligned_cols=94 Identities=23% Similarity=0.352 Sum_probs=79.8
Q ss_pred CcEEEEeecccccCCCCCCCCCCCCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCH
Q 024018 168 GRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSK 247 (274)
Q Consensus 168 g~~i~v~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~ 247 (274)
.|+|.|+.+...... ...++|||+-|...-.|||++.+|.. ||.|.+|.+.+.++ |.++|+|||.|.+-
T Consensus 2 nrpiqvkpadsesrg---------~~drklfvgml~kqq~e~dvrrlf~p-fG~~~e~tvlrg~d-g~sKGCAFVKf~s~ 70 (371)
T KOG0146|consen 2 NRPIQVKPADSESRG---------GDDRKLFVGMLNKQQSEDDVRRLFQP-FGNIEECTVLRGPD-GNSKGCAFVKFSSH 70 (371)
T ss_pred CCCccccccccccCC---------ccchhhhhhhhcccccHHHHHHHhcc-cCCcceeEEecCCC-CCCCCceEEEeccc
Confidence 466777776654332 23689999999999999999999999 99999999999886 88999999999999
Q ss_pred HHHHHHHHHhCCceeC---CeEEEEEEe
Q 024018 248 KVAETAISAFQGKVIM---CLVIALSYL 272 (274)
Q Consensus 248 ~~a~~A~~~l~g~~i~---g~~i~v~~a 272 (274)
.+|+.||..|||..-. ...|.|+||
T Consensus 71 ~eAqaAI~aLHgSqTmpGASSSLVVK~A 98 (371)
T KOG0146|consen 71 AEAQAAINALHGSQTMPGASSSLVVKFA 98 (371)
T ss_pred hHHHHHHHHhcccccCCCCccceEEEec
Confidence 9999999999996543 468888886
No 111
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.19 E-value=4.9e-11 Score=109.32 Aligned_cols=110 Identities=25% Similarity=0.362 Sum_probs=90.4
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeeccc
Q 024018 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178 (274)
Q Consensus 99 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 178 (274)
-++|||||+|+.++++.+|..+|+.||+|.+|.++.. +|+|||.+....+|.+|+..|+...+.++.|+|.|+..
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~-----R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP-----RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC-----CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 3689999999999999999999999999999999865 99999999999999999999999999999999999988
Q ss_pred ccCCCCCCCCCCCCCccceEEecCCccccHHHHHHHHhh
Q 024018 179 KKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217 (274)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~ 217 (274)
+..+.. -...-...+=|.-||+.--.++++.+++.
T Consensus 495 ~G~kse----~k~~wD~~lGVt~IP~~kLt~dl~~~~eg 529 (894)
T KOG0132|consen 495 KGPKSE----YKDYWDVELGVTYIPWEKLTDDLEAWCEG 529 (894)
T ss_pred CCcchh----hhhhhhcccCeeEeehHhcCHHHHHhhhh
Confidence 765531 11111233456677876655667777764
No 112
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.17 E-value=1.3e-10 Score=91.15 Aligned_cols=78 Identities=18% Similarity=0.292 Sum_probs=73.2
Q ss_pred ccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 024018 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271 (274)
Q Consensus 194 ~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~ 271 (274)
...++|..+|..+.+.++..+|..++|.|..+++.++..||.++|||||+|++++.|.-|-+.||+.-+.|+.|.|.+
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 466999999999999999999999668999999999999999999999999999999999999999999999998876
No 113
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=99.17 E-value=1.9e-11 Score=103.74 Aligned_cols=172 Identities=17% Similarity=0.205 Sum_probs=138.1
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecC-CCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeecc
Q 024018 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (274)
Q Consensus 99 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 177 (274)
...+.|+|++...+.+.+...++..+|.+....+.... ....+|++++.|...+.+..|+.......+.++.+..-...
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 46789999999999999999999999987777666544 47889999999999999999999533356677766665555
Q ss_pred cccCCCCCC-CCCCCCCccce-EEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHH
Q 024018 178 IKKKNPFPP-VQPKPFATFNL-FIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255 (274)
Q Consensus 178 ~~~~~~~~~-~~~~~~~~~~l-~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~ 255 (274)
......... .........++ +|++++..+++++|+..|.. +|.|..+++..++.+|.++|+|+|.|.....+..++.
T Consensus 167 ~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~-~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~ 245 (285)
T KOG4210|consen 167 RRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVS-SGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALN 245 (285)
T ss_pred cccccccchhcccccCccccceeecccccccchHHHhhhccC-cCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhh
Confidence 444221111 11222223444 49999999999999999987 9999999999999999999999999999999999999
Q ss_pred HhCCceeCCeEEEEEEe
Q 024018 256 AFQGKVIMCLVIALSYL 272 (274)
Q Consensus 256 ~l~g~~i~g~~i~v~~a 272 (274)
. ....+.++.+.+.+.
T Consensus 246 ~-~~~~~~~~~~~~~~~ 261 (285)
T KOG4210|consen 246 D-QTRSIGGRPLRLEED 261 (285)
T ss_pred c-ccCcccCcccccccC
Confidence 8 888899999888764
No 114
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.17 E-value=8.1e-11 Score=93.72 Aligned_cols=76 Identities=22% Similarity=0.330 Sum_probs=70.2
Q ss_pred ccceEEecCCccccHHHHHH----HHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEE
Q 024018 194 TFNLFIANLSFEARAKDLRE----FFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIAL 269 (274)
Q Consensus 194 ~~~l~V~nlp~~~~~~~l~~----~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v 269 (274)
..+|||.||+..+..++|+. +|+. ||.|.+|...+. .+.+|-|||.|++.+.|-.|+.+|+|+.+.|+.++|
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsq-fG~ildI~a~kt---~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQ-FGKILDISAFKT---PKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHh-hCCeEEEEecCC---CCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 44999999999999999998 9999 999999988654 467999999999999999999999999999999999
Q ss_pred EEee
Q 024018 270 SYLY 273 (274)
Q Consensus 270 ~~a~ 273 (274)
.||+
T Consensus 85 qyA~ 88 (221)
T KOG4206|consen 85 QYAK 88 (221)
T ss_pred eccc
Confidence 9986
No 115
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.17 E-value=4.8e-11 Score=97.97 Aligned_cols=69 Identities=32% Similarity=0.508 Sum_probs=65.0
Q ss_pred cceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 024018 195 FNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSYL 272 (274)
Q Consensus 195 ~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a 272 (274)
.+|||+|||..+++.+|+.+|++ ||+|.+|.|+ ++||||..++...|..|+..|||.+|.|..|+|+-+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~-ygkVlECDIv--------KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaS 71 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQ-YGKVLECDIV--------KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEAS 71 (346)
T ss_pred cchhccCCCcccchHHHHHHHHh-hCceEeeeee--------cccceEEeecccccHHHHhhcccceecceEEEEEec
Confidence 46999999999999999999999 9999999998 568999999999999999999999999999999754
No 116
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.10 E-value=3.8e-10 Score=95.94 Aligned_cols=166 Identities=21% Similarity=0.260 Sum_probs=119.9
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCceEE-EEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeecc
Q 024018 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (274)
Q Consensus 99 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~-v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 177 (274)
+...+..++|||..++.+|..+|+..-.... +-+.....|+..|.|.|.|.+.|.-+.|++. +...+++|.|.|-.+.
T Consensus 59 ~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkR-hkhh~g~ryievYka~ 137 (508)
T KOG1365|consen 59 DNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKR-HKHHMGTRYIEVYKAT 137 (508)
T ss_pred cceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHh-hhhhccCCceeeeccC
Confidence 4455778899999999999999986533222 2233444688899999999999999999995 7788889999998777
Q ss_pred cccCCCCCC----CCC---CCCCccceEEecCCccccHHHHHHHHhh---cCCceEEEEEEEcCCCCCCccEEEEEEcCH
Q 024018 178 IKKKNPFPP----VQP---KPFATFNLFIANLSFEARAKDLREFFIS---EGWDVVSAEVIFHDNPRRSAGYGFVSFKSK 247 (274)
Q Consensus 178 ~~~~~~~~~----~~~---~~~~~~~l~V~nlp~~~~~~~l~~~f~~---~~G~v~~~~i~~~~~~g~~~g~afV~f~~~ 247 (274)
...--.... ... ....--.|.+++||+++++.++.+||.. +-|..+.+-+++.++ |+..|-|||.|..+
T Consensus 138 ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpd-grpTGdAFvlfa~e 216 (508)
T KOG1365|consen 138 GEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPD-GRPTGDAFVLFACE 216 (508)
T ss_pred chhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCC-CCcccceEEEecCH
Confidence 653211110 011 1111345778899999999999999963 224555666666654 89999999999999
Q ss_pred HHHHHHHHHhCCceeCCeEE
Q 024018 248 KVAETAISAFQGKVIMCLVI 267 (274)
Q Consensus 248 ~~a~~A~~~l~g~~i~g~~i 267 (274)
++|+.|+.+ |...++-|.|
T Consensus 217 e~aq~aL~k-hrq~iGqRYI 235 (508)
T KOG1365|consen 217 EDAQFALRK-HRQNIGQRYI 235 (508)
T ss_pred HHHHHHHHH-HHHHHhHHHH
Confidence 999999986 4444444433
No 117
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.10 E-value=5.6e-12 Score=116.56 Aligned_cols=143 Identities=18% Similarity=0.245 Sum_probs=120.3
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecC-CCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeec
Q 024018 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (274)
Q Consensus 98 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 176 (274)
....++||.||++.+.+.+|...|..+|.+..+++.... +++.+|+||++|..++++.+||.. ....+.|
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f-~d~~~~g-------- 735 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAF-RDSCFFG-------- 735 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhh-hhhhhhh--------
Confidence 345679999999999999999999999998888777444 489999999999999999999985 4333333
Q ss_pred ccccCCCCCCCCCCCCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHH
Q 024018 177 KIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256 (274)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 256 (274)
...++|+|.|+..|.++++.++.. +|.+.+.+++.... |+++|.|+|.|.+..++.+++..
T Consensus 736 -----------------K~~v~i~g~pf~gt~e~~k~l~~~-~gn~~~~~~vt~r~-gkpkg~a~v~y~~ea~~s~~~~s 796 (881)
T KOG0128|consen 736 -----------------KISVAISGPPFQGTKEELKSLASK-TGNVTSLRLVTVRA-GKPKGKARVDYNTEADASRKVAS 796 (881)
T ss_pred -----------------hhhhheeCCCCCCchHHHHhhccc-cCCccccchhhhhc-cccccceeccCCCcchhhhhccc
Confidence 245999999999999999999998 99999998777665 89999999999999999999887
Q ss_pred hCCceeCCeEEE
Q 024018 257 FQGKVIMCLVIA 268 (274)
Q Consensus 257 l~g~~i~g~~i~ 268 (274)
.++..+..+.+.
T Consensus 797 ~d~~~~rE~~~~ 808 (881)
T KOG0128|consen 797 VDVAGKRENNGE 808 (881)
T ss_pred chhhhhhhcCcc
Confidence 776655544333
No 118
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.08 E-value=2.9e-10 Score=104.32 Aligned_cols=73 Identities=16% Similarity=0.281 Sum_probs=69.2
Q ss_pred ccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEee
Q 024018 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSYLY 273 (274)
Q Consensus 194 ~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a~ 273 (274)
+++|||++|+..+++.+|+.+|++ ||.|.+|.++ .++|+|||.+.+.++|.+|+.+|++..+.++.|+|.||.
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~fee-fGeiqSi~li------~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEE-FGEIQSIILI------PPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHh-cccceeEeec------cCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 589999999999999999999999 9999999886 468999999999999999999999999999999999984
No 119
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.06 E-value=7.3e-10 Score=86.98 Aligned_cols=83 Identities=22% Similarity=0.309 Sum_probs=75.1
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhcc-CceEEEEEeecC-CCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEe
Q 024018 97 EYSKTRLVAQNVPWTSTHEDIRALFEQH-GTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174 (274)
Q Consensus 97 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~-G~v~~v~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 174 (274)
......+||+.+|....+.++..+|.+| |.|..+++-+++ +|.++|||||+|.+++.|.-|-+.||+..++|+.|.|.
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 3455679999999999999999999998 678888887775 69999999999999999999999999999999999999
Q ss_pred ecccc
Q 024018 175 YAKIK 179 (274)
Q Consensus 175 ~~~~~ 179 (274)
+-.+.
T Consensus 126 vmppe 130 (214)
T KOG4208|consen 126 VMPPE 130 (214)
T ss_pred EeCch
Confidence 98876
No 120
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=4.9e-10 Score=94.40 Aligned_cols=82 Identities=15% Similarity=0.301 Sum_probs=76.6
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecC-CCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeec
Q 024018 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (274)
Q Consensus 98 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 176 (274)
.+.+.|||-.|.+-+++++|.-+|+.||.|.++.+++|. +|.+-.||||+|.+.+++++|.-.|++..|+++.|.|.++
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 356889999999999999999999999999999999997 5999999999999999999999999999999999999987
Q ss_pred ccc
Q 024018 177 KIK 179 (274)
Q Consensus 177 ~~~ 179 (274)
..-
T Consensus 317 QSV 319 (479)
T KOG0415|consen 317 QSV 319 (479)
T ss_pred hhh
Confidence 643
No 121
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.01 E-value=4.7e-09 Score=95.46 Aligned_cols=168 Identities=15% Similarity=0.057 Sum_probs=125.5
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCC-CceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeecc
Q 024018 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKN-RNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (274)
Q Consensus 99 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~-~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 177 (274)
++..+-+.+.+++..+.++++||... .|-.+.|..+.-+ ...|.++|+|....++.+|++. +...+..|.+.+....
T Consensus 310 d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~r-n~~~~~~R~~q~~P~g 387 (944)
T KOG4307|consen 310 DKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTR-NPSDDVNRPFQTGPPG 387 (944)
T ss_pred hhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhc-CchhhhhcceeecCCC
Confidence 55667778999999999999999753 2445555555543 3488999999999999999984 6677778888876554
Q ss_pred cccCCCCC------------------------------CCCCCCCCccceEEecCCccccHHHHHHHHhhcCCceEE-EE
Q 024018 178 IKKKNPFP------------------------------PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVS-AE 226 (274)
Q Consensus 178 ~~~~~~~~------------------------------~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~-~~ 226 (274)
........ ........+.+|||..||..+++..+.++|+. .-.|++ |.
T Consensus 388 ~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~-~~~Ved~I~ 466 (944)
T KOG4307|consen 388 NLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMG-AAAVEDFIE 466 (944)
T ss_pred ccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhh-hhhhhheeE
Confidence 32111000 01112234678999999999999999999998 446666 55
Q ss_pred EEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 024018 227 VIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALS 270 (274)
Q Consensus 227 i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~ 270 (274)
+...+ +++.++.|||+|.+++++.+|+..-+.+.++.|.|+|.
T Consensus 467 lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~ 509 (944)
T KOG4307|consen 467 LTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVD 509 (944)
T ss_pred eccCC-cccccchhhheeccccccchhhhcccccccCceEEEee
Confidence 54444 46789999999999999999998878888888999885
No 122
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.99 E-value=1.5e-09 Score=91.35 Aligned_cols=79 Identities=27% Similarity=0.362 Sum_probs=70.3
Q ss_pred ccCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHH-cCCCeecCcEEEEe
Q 024018 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN-LESYEFEGRTLKVN 174 (274)
Q Consensus 96 ~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-l~~~~~~g~~i~v~ 174 (274)
++....+||||+|-..++|.+|++.|-+||+|+.+.+... ++.|||+|.+.++|++|... ++...++|++|.|.
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~-----~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~ 298 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR-----KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIK 298 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc-----cccceeeehhhHHHHHHHHhhcceeeecceEEEEE
Confidence 4556788999999999999999999999999999999865 78999999999999987755 55577899999999
Q ss_pred ecccc
Q 024018 175 YAKIK 179 (274)
Q Consensus 175 ~~~~~ 179 (274)
|..+.
T Consensus 299 Wg~~~ 303 (377)
T KOG0153|consen 299 WGRPK 303 (377)
T ss_pred eCCCc
Confidence 99983
No 123
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.99 E-value=2.8e-09 Score=96.85 Aligned_cols=80 Identities=20% Similarity=0.139 Sum_probs=67.0
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHhccCceEE-EEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeec
Q 024018 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (274)
Q Consensus 98 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~-v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 176 (274)
....+|||..||..+++.++.++|.....|++ |.|.+-.+++.++.|||+|..++++.+|...-+.+.++.|.|+|.-.
T Consensus 432 ~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 432 GAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred CccceEEeccCCccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeech
Confidence 35678999999999999999999999888887 77777788999999999999999988888754555666778888654
Q ss_pred c
Q 024018 177 K 177 (274)
Q Consensus 177 ~ 177 (274)
.
T Consensus 512 ~ 512 (944)
T KOG4307|consen 512 A 512 (944)
T ss_pred h
Confidence 3
No 124
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.94 E-value=4.1e-09 Score=86.58 Aligned_cols=85 Identities=21% Similarity=0.419 Sum_probs=77.6
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeec
Q 024018 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (274)
Q Consensus 97 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 176 (274)
+....+|+|.|||+.+++++|+++|..||.+..+.+-.++.|.+.|.|-|.|...++|.+|++.++|..++|+.|++...
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 44557899999999999999999999999999999988999999999999999999999999999999999999998887
Q ss_pred ccccC
Q 024018 177 KIKKK 181 (274)
Q Consensus 177 ~~~~~ 181 (274)
.....
T Consensus 160 ~~~~~ 164 (243)
T KOG0533|consen 160 SSPSQ 164 (243)
T ss_pred cCccc
Confidence 65543
No 125
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.92 E-value=6.5e-09 Score=92.68 Aligned_cols=84 Identities=26% Similarity=0.385 Sum_probs=75.3
Q ss_pred ccCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecC-CCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEe
Q 024018 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174 (274)
Q Consensus 96 ~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 174 (274)
.....+.|||.+|...+...+|+.+|++||.|+..+++.+. .--.+.|+||++.+.++|.+||..|+...|+|+.|.|+
T Consensus 401 rs~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVE 480 (940)
T KOG4661|consen 401 RSTLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVE 480 (940)
T ss_pred ccccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeee
Confidence 34456889999999999999999999999999999988775 33458899999999999999999999999999999999
Q ss_pred ecccc
Q 024018 175 YAKIK 179 (274)
Q Consensus 175 ~~~~~ 179 (274)
.++..
T Consensus 481 kaKNE 485 (940)
T KOG4661|consen 481 KAKNE 485 (940)
T ss_pred ecccC
Confidence 98754
No 126
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.90 E-value=2.7e-09 Score=91.10 Aligned_cols=154 Identities=20% Similarity=0.203 Sum_probs=105.5
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCC-CCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeecc
Q 024018 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (274)
Q Consensus 99 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~-~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 177 (274)
...+||||+||.++++++++++|.+||.|..+.++.|.+ .+++||+||.|.+++.+++++. ..-..|.|+.+.|+.|.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAI 174 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeecc
Confidence 355899999999999999999999999999998888875 8999999999999999999987 57899999999999999
Q ss_pred cccCCCCCCCCCCCCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEE------EcCCCCCCccEEEEEEcCHHHHH
Q 024018 178 IKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVI------FHDNPRRSAGYGFVSFKSKKVAE 251 (274)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~------~~~~~g~~~g~afV~f~~~~~a~ 251 (274)
++............. ....++....+.-.|...|+. ||.+....-- +.... .+.|++|..|.......
T Consensus 175 pk~~~~~~~~~~~~~----~~~~~~g~~~~~~~l~~~~~g-~~~~~~~~~~~~~~~~~~~~~-~~~g~g~~~~~~~~~~~ 248 (311)
T KOG4205|consen 175 PKEVMQSTKSSVSTR----GKGNNLGNGRTGFFLKKYFKG-YGPVGMSDYGGRPVGRRYGPL-FNGGSGYPEFGNSGLGF 248 (311)
T ss_pred chhhccccccccccc----cccccccccccccccchhccc-cCccccccccccccccccccc-cCCCccccccCcccccc
Confidence 987655432111111 111123333333334444554 4433210000 00000 24678899998777766
Q ss_pred HHHHHhCC
Q 024018 252 TAISAFQG 259 (274)
Q Consensus 252 ~A~~~l~g 259 (274)
.+...+++
T Consensus 249 ~~~~~~~~ 256 (311)
T KOG4205|consen 249 GYGNKLNR 256 (311)
T ss_pred ccccccCC
Confidence 66655554
No 127
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.89 E-value=1.7e-08 Score=71.32 Aligned_cols=80 Identities=21% Similarity=0.176 Sum_probs=71.1
Q ss_pred cceEEecCCccccHHHHHHHHhhcC-CceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeC----CeEEEE
Q 024018 195 FNLFIANLSFEARAKDLREFFISEG-WDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM----CLVIAL 269 (274)
Q Consensus 195 ~~l~V~nlp~~~~~~~l~~~f~~~~-G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~----g~~i~v 269 (274)
.+|.|+|+|...+.++|.+++...+ |....+.++.|..++...|||||.|.+.++|.+-.+.++|..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 5799999999999999999988633 66777888999888899999999999999999999999999876 678899
Q ss_pred EEeeC
Q 024018 270 SYLYL 274 (274)
Q Consensus 270 ~~a~l 274 (274)
.||++
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 99985
No 128
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.85 E-value=2.8e-10 Score=97.86 Aligned_cols=151 Identities=19% Similarity=0.230 Sum_probs=122.8
Q ss_pred CeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCC-CeecCcEEEEeecccc
Q 024018 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLES-YEFEGRTLKVNYAKIK 179 (274)
Q Consensus 101 ~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~-~~~~g~~i~v~~~~~~ 179 (274)
+++|+|||.+.++..+|..+|.....-.+-.++. ..||+||.+.+...|.+|++.++| ..+.|+.+.+..+-++
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~-----k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~k 76 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV-----KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPK 76 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee-----ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhH
Confidence 4699999999999999999998653211112221 278999999999999999999998 6789999999998887
Q ss_pred cCCCCCCCCCCCCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCC
Q 024018 180 KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259 (274)
Q Consensus 180 ~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g 259 (274)
..+ .+.+-++|+|....++.+..+... ||.|..|..+..+. -.-..-|.|...+.+..|+.+|+|
T Consensus 77 kqr-----------srk~Qirnippql~wevld~Ll~q-yg~ve~~eqvnt~~---etavvnvty~~~~~~~~ai~kl~g 141 (584)
T KOG2193|consen 77 KQR-----------SRKIQIRNIPPQLQWEVLDSLLAQ-YGTVENCEQVNTDS---ETAVVNVTYSAQQQHRQAIHKLNG 141 (584)
T ss_pred HHH-----------hhhhhHhcCCHHHHHHHHHHHHhc-cCCHhHhhhhccch---HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 665 466889999999999999999998 99999887643321 122344688999999999999999
Q ss_pred ceeCCeEEEEEE
Q 024018 260 KVIMCLVIALSY 271 (274)
Q Consensus 260 ~~i~g~~i~v~~ 271 (274)
..+.+..+++.|
T Consensus 142 ~Q~en~~~k~~Y 153 (584)
T KOG2193|consen 142 PQLENQHLKVGY 153 (584)
T ss_pred hHhhhhhhhccc
Confidence 999998888876
No 129
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.84 E-value=1.2e-08 Score=85.93 Aligned_cols=77 Identities=22% Similarity=0.323 Sum_probs=66.6
Q ss_pred CCCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHh-CCceeCCeEEE
Q 024018 190 KPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAF-QGKVIMCLVIA 268 (274)
Q Consensus 190 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l-~g~~i~g~~i~ 268 (274)
.+....+|||++|-..++|.+|+++|.+ ||.|..+.+... +++|||+|.+.++|+.|.+++ +...|+|++|.
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyq-yGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~ 296 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQ-YGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLK 296 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhh-cCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEE
Confidence 3444688999999999999999999999 999999998743 579999999999999998765 45668999999
Q ss_pred EEEee
Q 024018 269 LSYLY 273 (274)
Q Consensus 269 v~~a~ 273 (274)
|.|.+
T Consensus 297 i~Wg~ 301 (377)
T KOG0153|consen 297 IKWGR 301 (377)
T ss_pred EEeCC
Confidence 99975
No 130
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.84 E-value=3.1e-09 Score=94.62 Aligned_cols=166 Identities=18% Similarity=0.195 Sum_probs=109.3
Q ss_pred hhccCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEE
Q 024018 94 REEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKV 173 (274)
Q Consensus 94 ~~~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v 173 (274)
.......++|+|-|||..+++++|+.+|+.||+|+.|+..+.+ +|.+||+|.|..+|++|++.|++..+.|+.|+.
T Consensus 69 ~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~----~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~ 144 (549)
T KOG4660|consen 69 SEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNK----RGIVFVEFYDVRDAERALKALNRREIAGKRIKR 144 (549)
T ss_pred CcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccccc----CceEEEEEeehHhHHHHHHHHHHHHhhhhhhcC
Confidence 3346678999999999999999999999999999998876653 889999999999999999999999999998882
Q ss_pred eecccccCCCCC-------------CCCCCCCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEE
Q 024018 174 NYAKIKKKNPFP-------------PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYG 240 (274)
Q Consensus 174 ~~~~~~~~~~~~-------------~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~a 240 (274)
............ ......-+...++ +.|+...+...++..+. ++|.+.. +- ++.-.-.-
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~-g~l~P~~s~~~~~~~~~-~~~~~~~-~~-----~~~~~hq~ 216 (549)
T KOG4660|consen 145 PGGARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLF-GMLSPTRSSILLEHISS-VDGSSPG-RE-----TPLLNHQR 216 (549)
T ss_pred CCcccccchhcccchhhhhccchhhcCCCCCCcCCcce-eeeccchhhhhhhcchh-ccCcccc-cc-----ccchhhhh
Confidence 111111110000 0001111112232 33777777766666666 4777654 21 12222256
Q ss_pred EEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 024018 241 FVSFKSKKVAETAISAFQGKVIMCLVIALSYL 272 (274)
Q Consensus 241 fV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a 272 (274)
+++|.+..++..+.... |..+.+....+.|+
T Consensus 217 ~~~~~~~~s~a~~~~~~-G~~~s~~~~v~t~S 247 (549)
T KOG4660|consen 217 FVEFADNRSYAFSEPRG-GFLISNSSGVITFS 247 (549)
T ss_pred hhhhccccchhhcccCC-ceecCCCCceEEec
Confidence 77888877775555522 55555655555443
No 131
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.81 E-value=1.3e-08 Score=90.79 Aligned_cols=80 Identities=25% Similarity=0.341 Sum_probs=74.0
Q ss_pred CccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 024018 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSYL 272 (274)
Q Consensus 193 ~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a 272 (274)
.+++|||.+|...+...+|+.+|++ ||+|+-..|+.+..+.-.++|+||.+.+.++|.+||+.||.+.+.|+.|.|.-|
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSK-yGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSK-YGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHH-hcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 3588999999999999999999998 999999999998766567999999999999999999999999999999999876
Q ss_pred e
Q 024018 273 Y 273 (274)
Q Consensus 273 ~ 273 (274)
+
T Consensus 483 K 483 (940)
T KOG4661|consen 483 K 483 (940)
T ss_pred c
Confidence 4
No 132
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.79 E-value=9.5e-09 Score=84.59 Aligned_cols=85 Identities=21% Similarity=0.341 Sum_probs=78.7
Q ss_pred hhccCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCC-CCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEE
Q 024018 94 REEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172 (274)
Q Consensus 94 ~~~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~-~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~ 172 (274)
...+.+.+.+||||+.+.+|.+++...|+.||.|..+.+..++. |+++|||||+|.+.+.+..++. |+|..+.|+.+.
T Consensus 95 ~~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~ 173 (231)
T KOG4209|consen 95 RQKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIE 173 (231)
T ss_pred hhhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccce
Confidence 34567788899999999999999999999999999999998886 7899999999999999999999 999999999999
Q ss_pred Eeecccc
Q 024018 173 VNYAKIK 179 (274)
Q Consensus 173 v~~~~~~ 179 (274)
|.+....
T Consensus 174 vt~~r~~ 180 (231)
T KOG4209|consen 174 VTLKRTN 180 (231)
T ss_pred eeeeeee
Confidence 9998866
No 133
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.78 E-value=2.5e-08 Score=88.37 Aligned_cols=85 Identities=19% Similarity=0.332 Sum_probs=71.9
Q ss_pred ccCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecC-CCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEe
Q 024018 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174 (274)
Q Consensus 96 ~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 174 (274)
......+|||+|||.++++++|+++|..||+|+...|.... .++...||||+|.+.+++..||.. +-..++|+++.|+
T Consensus 284 ~~~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Ve 362 (419)
T KOG0116|consen 284 PRADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVE 362 (419)
T ss_pred eeecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEE
Confidence 34455669999999999999999999999999988776544 344459999999999999999996 7899999999999
Q ss_pred ecccccC
Q 024018 175 YAKIKKK 181 (274)
Q Consensus 175 ~~~~~~~ 181 (274)
..+....
T Consensus 363 ek~~~~~ 369 (419)
T KOG0116|consen 363 EKRPGFR 369 (419)
T ss_pred ecccccc
Confidence 8776543
No 134
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.74 E-value=4.3e-08 Score=80.63 Aligned_cols=76 Identities=22% Similarity=0.330 Sum_probs=68.9
Q ss_pred ccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 024018 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271 (274)
Q Consensus 194 ~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~ 271 (274)
...|+|.|||+.+.+++|+++|+. ||.++.+.+..++ .|.+.|.|-|.|...+||.+|++.++|..++|+.|++..
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~-~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAE-FGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHH-hccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 367999999999999999999999 8988888776666 489999999999999999999999999999999988764
No 135
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.72 E-value=7.5e-08 Score=76.59 Aligned_cols=80 Identities=15% Similarity=0.155 Sum_probs=64.9
Q ss_pred ccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeC---CeEEEEE
Q 024018 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM---CLVIALS 270 (274)
Q Consensus 194 ~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~---g~~i~v~ 270 (274)
-++|||.+||.++..-+|..+|.++.|.-...--..+.....++-+|||.|.+.++|..|+++|||..++ +..|+|+
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiE 113 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIE 113 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEee
Confidence 5899999999999999999999995553332222233333346679999999999999999999999997 8999999
Q ss_pred Eee
Q 024018 271 YLY 273 (274)
Q Consensus 271 ~a~ 273 (274)
+|+
T Consensus 114 lAK 116 (284)
T KOG1457|consen 114 LAK 116 (284)
T ss_pred ehh
Confidence 986
No 136
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.70 E-value=2.5e-08 Score=82.10 Aligned_cols=81 Identities=17% Similarity=0.233 Sum_probs=75.8
Q ss_pred CCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 024018 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALS 270 (274)
Q Consensus 191 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~ 270 (274)
..+...+||+|+.+.++.+++...|+. +|.|..+.+..|...|+++||+||+|.+.+.+..|+. |+|..|.|+.+.|.
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~-Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFES-CGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVT 175 (231)
T ss_pred ccCCceEEEeccccccccchhhheeec-cCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceee
Confidence 344678999999999999999999998 9999999999999999999999999999999999999 99999999999999
Q ss_pred Eee
Q 024018 271 YLY 273 (274)
Q Consensus 271 ~a~ 273 (274)
+.|
T Consensus 176 ~~r 178 (231)
T KOG4209|consen 176 LKR 178 (231)
T ss_pred eee
Confidence 876
No 137
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.66 E-value=6.6e-08 Score=88.39 Aligned_cols=82 Identities=18% Similarity=0.261 Sum_probs=74.0
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCC----CCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEE
Q 024018 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK----NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172 (274)
Q Consensus 97 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~----~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~ 172 (274)
+...+.|||+||++.++++.|..-|+.||+|..++|+.-++ .+.+.+|||.|-+..+|++|++.|+|..+.++.++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 44567899999999999999999999999999999987653 35677999999999999999999999999999999
Q ss_pred Eeeccc
Q 024018 173 VNYAKI 178 (274)
Q Consensus 173 v~~~~~ 178 (274)
+.|++.
T Consensus 251 ~gWgk~ 256 (877)
T KOG0151|consen 251 LGWGKA 256 (877)
T ss_pred eccccc
Confidence 999954
No 138
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.66 E-value=3.3e-07 Score=64.78 Aligned_cols=81 Identities=23% Similarity=0.402 Sum_probs=68.0
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHhcc--CceEEEEEeecC-CCCceeEEEEEECCHHHHHHHHHHcCCCeec----CcEEE
Q 024018 100 KTRLVAQNVPWTSTHEDIRALFEQH--GTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFE----GRTLK 172 (274)
Q Consensus 100 ~~~l~v~nLp~~~t~~~L~~~f~~~--G~v~~v~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~----g~~i~ 172 (274)
.+||+|.|||...|.++|.+++... |...-+.++.|. ++.+.|||||.|.+++.|.+..+.++|..+. .+...
T Consensus 1 RTTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 1 RTTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCE 80 (97)
T ss_pred CeeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEE
Confidence 3689999999999999999999753 556777888775 4788999999999999999999999998885 45677
Q ss_pred Eeeccccc
Q 024018 173 VNYAKIKK 180 (274)
Q Consensus 173 v~~~~~~~ 180 (274)
|.+|+-+.
T Consensus 81 i~yAriQG 88 (97)
T PF04059_consen 81 ISYARIQG 88 (97)
T ss_pred EehhHhhC
Confidence 77777554
No 139
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.62 E-value=2.2e-08 Score=85.56 Aligned_cols=156 Identities=17% Similarity=0.138 Sum_probs=119.4
Q ss_pred CeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCC----CCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeec
Q 024018 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK----NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (274)
Q Consensus 101 ~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~----~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 176 (274)
..|.|.||.+.++.++++.+|+..|.|.++.++.+.. ......|||.|.+...+..|-. |.+.++-|+.|.|..+
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 4799999999999999999999999999999987543 3456789999999999988865 7888888888888766
Q ss_pred ccccCCCC----------------CC-------------------------------CCCCCCCccceEEecCCccccHH
Q 024018 177 KIKKKNPF----------------PP-------------------------------VQPKPFATFNLFIANLSFEARAK 209 (274)
Q Consensus 177 ~~~~~~~~----------------~~-------------------------------~~~~~~~~~~l~V~nlp~~~~~~ 209 (274)
-....... ++ ...-..-.++++|.+|+..+...
T Consensus 87 ~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~ 166 (479)
T KOG4676|consen 87 GDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILP 166 (479)
T ss_pred CCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcch
Confidence 43211000 00 00000112679999999999999
Q ss_pred HHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeC
Q 024018 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263 (274)
Q Consensus 210 ~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~ 263 (274)
++-+.|+. +|.|.+..+.... ..-+|.++|....+...|+.. +|..+.
T Consensus 167 e~~e~f~r-~Gev~ya~~ask~----~s~~c~~sf~~qts~~halr~-~gre~k 214 (479)
T KOG4676|consen 167 ESGESFER-KGEVSYAHTASKS----RSSSCSHSFRKQTSSKHALRS-HGRERK 214 (479)
T ss_pred hhhhhhhh-cchhhhhhhhccC----CCcchhhhHhhhhhHHHHHHh-cchhhh
Confidence 99999998 8999887765433 345788999999999999985 776654
No 140
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.59 E-value=1.3e-07 Score=83.99 Aligned_cols=76 Identities=20% Similarity=0.278 Sum_probs=65.8
Q ss_pred cceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 024018 195 FNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSYL 272 (274)
Q Consensus 195 ~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a 272 (274)
..|||+|||.+++.++|+++|.. ||.|+...|....-.+...+||||+|++.++++.|+.+ +-..++|+++.|+--
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~-FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek 364 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQ-FGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEK 364 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhh-cccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEec
Confidence 45999999999999999999998 99999998877653334449999999999999999998 577789999998743
No 141
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.55 E-value=6.4e-08 Score=77.94 Aligned_cols=70 Identities=24% Similarity=0.470 Sum_probs=64.6
Q ss_pred cceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEee
Q 024018 195 FNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSYLY 273 (274)
Q Consensus 195 ~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a~ 273 (274)
..+||++||+.+.+.+|..+|.. ||.+.++.+. .||+||+|.+..+|..|+..|||..+.|-.+.|.|++
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~-yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r 71 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKG-YGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHAR 71 (216)
T ss_pred CceeecccCCccchhHHHHHHhh-ccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccc
Confidence 36899999999999999999998 9999998774 5789999999999999999999999999889999886
No 142
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.54 E-value=1e-07 Score=77.26 Aligned_cols=84 Identities=12% Similarity=0.248 Sum_probs=73.7
Q ss_pred ccCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecC-CCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEe
Q 024018 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174 (274)
Q Consensus 96 ~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 174 (274)
-.....+||.|.|...++++.|...|.+|-.-...++++++ +|+++||+||.|.+..++..|++.|+|..++.|.|+++
T Consensus 186 w~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklR 265 (290)
T KOG0226|consen 186 WDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLR 265 (290)
T ss_pred CccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhh
Confidence 34456779999999999999999999999877777777876 69999999999999999999999999999999999887
Q ss_pred ecccc
Q 024018 175 YAKIK 179 (274)
Q Consensus 175 ~~~~~ 179 (274)
-+.-+
T Consensus 266 kS~wk 270 (290)
T KOG0226|consen 266 KSEWK 270 (290)
T ss_pred hhhHH
Confidence 65443
No 143
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.54 E-value=6.6e-08 Score=86.34 Aligned_cols=72 Identities=21% Similarity=0.183 Sum_probs=64.1
Q ss_pred CCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEE
Q 024018 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIA 268 (274)
Q Consensus 191 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~ 268 (274)
..+..+|+|-|||..+++++|..+|+. ||+|..++. +-..+|.+||+|.|.-+|++|+++|++..+.|++|+
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~-yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGA-YGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHh-hcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 445789999999999999999999997 999998644 345689999999999999999999999999998876
No 144
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.51 E-value=5.5e-08 Score=77.13 Aligned_cols=76 Identities=14% Similarity=0.130 Sum_probs=68.7
Q ss_pred CccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 024018 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271 (274)
Q Consensus 193 ~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~ 271 (274)
..++|||+|+...++|+.|.++|-. .|.|.+|.|..+.+ +..+ ||||+|+++....-|++.+||-.+.++.+.|.+
T Consensus 8 ~drtl~v~n~~~~v~eelL~Elfiq-aGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~ 83 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQ-AGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL 83 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhc-cCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhccc
Confidence 3689999999999999999999998 89999998887765 4555 999999999999999999999999999888764
No 145
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.51 E-value=6.4e-07 Score=60.44 Aligned_cols=68 Identities=25% Similarity=0.358 Sum_probs=47.4
Q ss_pred cceEEecCCccccHH----HHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 024018 195 FNLFIANLSFEARAK----DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALS 270 (274)
Q Consensus 195 ~~l~V~nlp~~~~~~----~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~ 270 (274)
..|+|.|||...+.. -|+.+++.-.|+|..+ ..+-|+|.|.+.+.|.+|.+.|+|..+.|++|.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 358999999877655 4667777755678765 23579999999999999999999999999999999
Q ss_pred Ee
Q 024018 271 YL 272 (274)
Q Consensus 271 ~a 272 (274)
|.
T Consensus 73 ~~ 74 (90)
T PF11608_consen 73 FS 74 (90)
T ss_dssp SS
T ss_pred Ec
Confidence 87
No 146
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.48 E-value=7.7e-07 Score=75.23 Aligned_cols=79 Identities=8% Similarity=0.175 Sum_probs=70.2
Q ss_pred ccceEEecCCccccHHHHHHHHhhcCCceEE--------EEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCe
Q 024018 194 TFNLFIANLSFEARAKDLREFFISEGWDVVS--------AEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCL 265 (274)
Q Consensus 194 ~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~--------~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~ 265 (274)
...|||.|||.++|.+++.++|+. +|.|.. |.+-++.+ |..+|-|++.|--.+++.-|++.|++..+.|+
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sK-cGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSK-CGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHh-cceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 456999999999999999999998 887743 55666665 88999999999999999999999999999999
Q ss_pred EEEEEEeeC
Q 024018 266 VIALSYLYL 274 (274)
Q Consensus 266 ~i~v~~a~l 274 (274)
.|+|.-|++
T Consensus 212 ~~rVerAkf 220 (382)
T KOG1548|consen 212 KLRVERAKF 220 (382)
T ss_pred EEEEehhhh
Confidence 999998763
No 147
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.43 E-value=4.4e-07 Score=83.15 Aligned_cols=82 Identities=26% Similarity=0.335 Sum_probs=73.4
Q ss_pred CCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcC---CCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEE
Q 024018 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD---NPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVI 267 (274)
Q Consensus 191 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~---~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i 267 (274)
.+-+.+|||+||+..++++.|-..|.+ ||.|..++|+... ...+.+.++||.|-+..||++|++.|+|..+.+..+
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGr-fgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~ 249 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGR-FGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEM 249 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcc-cCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeee
Confidence 444688999999999999999999999 9999999998763 223567899999999999999999999999999999
Q ss_pred EEEEee
Q 024018 268 ALSYLY 273 (274)
Q Consensus 268 ~v~~a~ 273 (274)
++-|++
T Consensus 250 K~gWgk 255 (877)
T KOG0151|consen 250 KLGWGK 255 (877)
T ss_pred eecccc
Confidence 999985
No 148
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.36 E-value=2.6e-06 Score=57.52 Aligned_cols=71 Identities=21% Similarity=0.358 Sum_probs=48.9
Q ss_pred CeEEEeCCCCCCCHHHHHHHH----hccCc-eEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEee
Q 024018 101 TRLVAQNVPWTSTHEDIRALF----EQHGT-VLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (274)
Q Consensus 101 ~~l~v~nLp~~~t~~~L~~~f----~~~G~-v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 175 (274)
..|+|.|||.+.+...|+.-+ ..||- |..| . .+.|+|.|.+.+.|.+|.+.|+|..+.|++|.|.+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~-------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~ 73 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--S-------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSF 73 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-----------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEES
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--e-------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEE
Confidence 459999999999988776655 46764 6655 1 67899999999999999999999999999999999
Q ss_pred ccccc
Q 024018 176 AKIKK 180 (274)
Q Consensus 176 ~~~~~ 180 (274)
.....
T Consensus 74 ~~~~r 78 (90)
T PF11608_consen 74 SPKNR 78 (90)
T ss_dssp S--S-
T ss_pred cCCcc
Confidence 86543
No 149
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.20 E-value=6e-08 Score=90.39 Aligned_cols=165 Identities=17% Similarity=0.157 Sum_probs=127.7
Q ss_pred cCCCCeEEEeCCCCCCCHH-HHHHHHhccCceEEEEEeecCCCCcee-EEEEEECCHHHHHHHHHHcCCCeecCcEEEEe
Q 024018 97 EYSKTRLVAQNVPWTSTHE-DIRALFEQHGTVLDIELSMHSKNRNRG-LAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174 (274)
Q Consensus 97 ~~~~~~l~v~nLp~~~t~~-~L~~~f~~~G~v~~v~~~~~~~~~~~g-~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 174 (274)
....+..++.++.+..... ..+..|+.+|.|+.|++.......+.+ ++++.+....+++.|.. ..|..+.++.+.|.
T Consensus 568 ~~~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~-pa~~~~a~~~~av~ 646 (881)
T KOG0128|consen 568 PLERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATV-PAGGALANRSAAVG 646 (881)
T ss_pred hhhhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhccc-ccccccCCccccCC
Confidence 3455667888888877665 577889999999999887633333333 88999999999999987 58888999998888
Q ss_pred ecccccCCCCCC-CCCCCCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHH
Q 024018 175 YAKIKKKNPFPP-VQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETA 253 (274)
Q Consensus 175 ~~~~~~~~~~~~-~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A 253 (274)
.+.++....... .........++||.||+..+.+.+|...|.. +|.+..+.+....+.++-+|+|+++|...+++.+|
T Consensus 647 ~ad~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~-~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aa 725 (881)
T KOG0128|consen 647 LADAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSP-SGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAA 725 (881)
T ss_pred CCCchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCc-cchhhhHHHHHHhhccccccceeeEeecCCchhhh
Confidence 887765332211 1111123478999999999999999999998 89998888775666788999999999999999999
Q ss_pred HHHhCCceeC
Q 024018 254 ISAFQGKVIM 263 (274)
Q Consensus 254 ~~~l~g~~i~ 263 (274)
+...+++.++
T Consensus 726 V~f~d~~~~g 735 (881)
T KOG0128|consen 726 VAFRDSCFFG 735 (881)
T ss_pred hhhhhhhhhh
Confidence 9876665544
No 150
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.12 E-value=3.8e-06 Score=60.70 Aligned_cols=68 Identities=21% Similarity=0.229 Sum_probs=42.8
Q ss_pred cceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCc-----eeCCeEEEE
Q 024018 195 FNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK-----VIMCLVIAL 269 (274)
Q Consensus 195 ~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~-----~i~g~~i~v 269 (274)
..|++.+++..++.++|++.|+. ||.|.+|.+... ...|+|.|.+.++|++|+.++.-. .|.+..+.+
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~-~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~ 74 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQ-FGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTL 74 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-S-S--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHh-cCCcceEEecCC------CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEE
Confidence 56889999999999999999999 999999988644 346999999999999999877543 455555444
No 151
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.07 E-value=7.6e-06 Score=69.10 Aligned_cols=117 Identities=15% Similarity=0.234 Sum_probs=78.4
Q ss_pred CCCeEEEeCCCCCCCHHHH------HHHHhccCceEEEEEeecCC--CCceeE--EEEEECCHHHHHHHHHHcCCCeecC
Q 024018 99 SKTRLVAQNVPWTSTHEDI------RALFEQHGTVLDIELSMHSK--NRNRGL--AFVTMGSPDEATAALNNLESYEFEG 168 (274)
Q Consensus 99 ~~~~l~v~nLp~~~t~~~L------~~~f~~~G~v~~v~~~~~~~--~~~~g~--afv~f~~~~~a~~a~~~l~~~~~~g 168 (274)
..+-+||-+|++.+..++. .++|++||.|..|.+-+... ....+. .||+|.+.|+|.+||...+|..++|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 4567999999999877762 37999999999987755431 222222 4999999999999999999999999
Q ss_pred cEEEEeecccccCCCCCCCCCCCCCccceEEecCC---ccccHHHHHHHHh
Q 024018 169 RTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLS---FEARAKDLREFFI 216 (274)
Q Consensus 169 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp---~~~~~~~l~~~f~ 216 (274)
|.|+..+...+--... ......+...++|+..-. ...+.++|-..-.
T Consensus 193 r~lkatYGTTKYCtsY-LRn~~CpNp~CMyLHEpg~e~Ds~tK~el~n~qh 242 (480)
T COG5175 193 RVLKATYGTTKYCTSY-LRNAVCPNPDCMYLHEPGPEKDSLTKDELCNSQH 242 (480)
T ss_pred ceEeeecCchHHHHHH-HcCCCCCCCCeeeecCCCcccccccHHHHhhhhh
Confidence 9999988765521000 000112224556665332 3456666654433
No 152
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.94 E-value=1.2e-05 Score=68.23 Aligned_cols=78 Identities=18% Similarity=0.298 Sum_probs=67.6
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhccCc--eEEEEEeecCC-CCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEE
Q 024018 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGT--VLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKV 173 (274)
Q Consensus 97 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~--v~~v~~~~~~~-~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v 173 (274)
+..+-++|||||-|++|++||.+.+...|. +.++++..++. |.+||||+|...+.....+.++.|-...|+|+.=.|
T Consensus 77 ~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 77 EGRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred cCceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 445667999999999999999999988775 77888888875 999999999999999999999999999999975444
Q ss_pred e
Q 024018 174 N 174 (274)
Q Consensus 174 ~ 174 (274)
.
T Consensus 157 ~ 157 (498)
T KOG4849|consen 157 L 157 (498)
T ss_pred e
Confidence 3
No 153
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.90 E-value=4.6e-05 Score=63.32 Aligned_cols=65 Identities=15% Similarity=0.091 Sum_probs=53.9
Q ss_pred cHHHHHHHHhhcCCceEEEEEEEcCCCCCC-ccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 024018 207 RAKDLREFFISEGWDVVSAEVIFHDNPRRS-AGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSYL 272 (274)
Q Consensus 207 ~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~-~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a 272 (274)
-++++++.+++ ||+|..|.|+.++..... .--.||+|+..++|.+|+-.|||+.|+||.++..|-
T Consensus 299 lede~keEceK-yg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 299 LEDETKEECEK-YGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHHHh-hcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 35689999998 999999988877532221 224899999999999999999999999999998763
No 154
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.87 E-value=1.3e-05 Score=68.46 Aligned_cols=79 Identities=19% Similarity=0.201 Sum_probs=71.7
Q ss_pred ccceEEecCCccccHHHHHHHHhhcCCceEE--------EEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCe
Q 024018 194 TFNLFIANLSFEARAKDLREFFISEGWDVVS--------AEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCL 265 (274)
Q Consensus 194 ~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~--------~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~ 265 (274)
..++||.+||..+++++|.++|.. +|.|.. +.+-++.+|+.+++-|.|.|++...|+.|+.-+++..+.|.
T Consensus 66 ~~ti~v~g~~d~~~~~~~~~~f~q-cg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn 144 (351)
T KOG1995|consen 66 NETIFVWGCPDSVCENDNADFFLQ-CGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGN 144 (351)
T ss_pred cccceeeccCccchHHHHHHHHhh-cceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCC
Confidence 468999999999999999999998 887743 55667789999999999999999999999999999999999
Q ss_pred EEEEEEee
Q 024018 266 VIALSYLY 273 (274)
Q Consensus 266 ~i~v~~a~ 273 (274)
.|+|.+|.
T Consensus 145 ~ikvs~a~ 152 (351)
T KOG1995|consen 145 TIKVSLAE 152 (351)
T ss_pred Cchhhhhh
Confidence 99998875
No 155
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.84 E-value=3.9e-05 Score=55.43 Aligned_cols=57 Identities=26% Similarity=0.387 Sum_probs=37.7
Q ss_pred CeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcC
Q 024018 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLE 162 (274)
Q Consensus 101 ~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~ 162 (274)
..|+|.+++..++.++|++.|+.||.|..|.+.+. ...|||.|.+.+.|.+|+..+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G-----~~~g~VRf~~~~~A~~a~~~~~ 58 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG-----DTEGYVRFKTPEAAQKALEKLK 58 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT------SEEEEEESS---HHHHHHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC-----CCEEEEEECCcchHHHHHHHHH
Confidence 35889999999999999999999999998888643 5589999999999999998654
No 156
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.84 E-value=1.8e-05 Score=67.63 Aligned_cols=84 Identities=23% Similarity=0.326 Sum_probs=73.4
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhccCceEE--------EEEeecC-CCCceeEEEEEECCHHHHHHHHHHcCCCeec
Q 024018 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLD--------IELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFE 167 (274)
Q Consensus 97 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~--------v~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~ 167 (274)
.....+|||.+||..+++++|.++|.++|.|.. |.+.+++ ++.+|+-|.|.|.+...|..|+..+++..+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 445567999999999999999999999998753 5566665 4899999999999999999999999999999
Q ss_pred CcEEEEeeccccc
Q 024018 168 GRTLKVNYAKIKK 180 (274)
Q Consensus 168 g~~i~v~~~~~~~ 180 (274)
|..|+|-.+..+.
T Consensus 143 gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GNTIKVSLAERRT 155 (351)
T ss_pred CCCchhhhhhhcc
Confidence 9999998887665
No 157
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.76 E-value=5.8e-05 Score=67.95 Aligned_cols=79 Identities=18% Similarity=0.335 Sum_probs=63.8
Q ss_pred cCCCCeEEEeCCCCCC--C----HHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCc-
Q 024018 97 EYSKTRLVAQNVPWTS--T----HEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGR- 169 (274)
Q Consensus 97 ~~~~~~l~v~nLp~~~--t----~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~- 169 (274)
+.-...|+|.|+|--- . ..-|.++|+++|+++.+.++.+..|..+||.|++|.+..+|..|++.|||..|+-+
T Consensus 55 eg~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 55 EGFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CCcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 3456789999998632 1 23455789999999999999888888999999999999999999999999988754
Q ss_pred EEEEee
Q 024018 170 TLKVNY 175 (274)
Q Consensus 170 ~i~v~~ 175 (274)
...|+.
T Consensus 135 tf~v~~ 140 (698)
T KOG2314|consen 135 TFFVRL 140 (698)
T ss_pred eEEeeh
Confidence 444443
No 158
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.75 E-value=9.5e-05 Score=60.42 Aligned_cols=88 Identities=25% Similarity=0.242 Sum_probs=77.0
Q ss_pred HHHHHHHHcCCCeecCcEEEEeecccccCCCCCCCCCCCCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCC
Q 024018 153 EATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDN 232 (274)
Q Consensus 153 ~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~ 232 (274)
-|+.|...|++....|+.++|.++.. ..|+|.||...+.-|.+.+.|+. ||.|....+..|+.
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~----------------a~l~V~nl~~~~sndll~~~f~~-fg~~e~av~~vD~r 68 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMH----------------AELYVVNLMQGASNDLLEQAFRR-FGPIERAVAKVDDR 68 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeecc----------------ceEEEEecchhhhhHHHHHhhhh-cCccchheeeeccc
Confidence 45667777899999999999999974 34999999999999999999998 99998887777764
Q ss_pred CCCCccEEEEEEcCHHHHHHHHHHhC
Q 024018 233 PRRSAGYGFVSFKSKKVAETAISAFQ 258 (274)
Q Consensus 233 ~g~~~g~afV~f~~~~~a~~A~~~l~ 258 (274)
+++.+-++|+|...-.|.+|+..+.
T Consensus 69 -~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 69 -GKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred -ccccccchhhhhcchhHHHHHHHhc
Confidence 7788899999999999999999874
No 159
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.74 E-value=9.2e-05 Score=46.39 Aligned_cols=52 Identities=21% Similarity=0.340 Sum_probs=42.4
Q ss_pred CeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHH
Q 024018 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAAL 158 (274)
Q Consensus 101 ~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~ 158 (274)
+.|-|.+.++... +++...|..||+|.++.+.. .....||.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~-----~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPE-----STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCC-----CCcEEEEEECCHHHHHhhC
Confidence 4688899987776 45556888999999988852 2668999999999999985
No 160
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.72 E-value=2.1e-05 Score=67.11 Aligned_cols=82 Identities=18% Similarity=0.434 Sum_probs=73.2
Q ss_pred CCeEE-EeCCCCCCCHHHHHHHHhccCceEEEEEeecCC-CCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeecc
Q 024018 100 KTRLV-AQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (274)
Q Consensus 100 ~~~l~-v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~-~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 177 (274)
..++| |++|+..+++++|+..|..+|.|..+++..++. |..+|||||.|.....+.+++.. +...+.|+++.+.+..
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDE 262 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCC
Confidence 34455 999999999999999999999999999988764 89999999999999999999986 8899999999999988
Q ss_pred cccCC
Q 024018 178 IKKKN 182 (274)
Q Consensus 178 ~~~~~ 182 (274)
+....
T Consensus 263 ~~~~~ 267 (285)
T KOG4210|consen 263 PRPKS 267 (285)
T ss_pred CCccc
Confidence 77554
No 161
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.71 E-value=0.00011 Score=66.12 Aligned_cols=74 Identities=18% Similarity=0.228 Sum_probs=60.7
Q ss_pred ccceEEecCCccc------cHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeC-CeE
Q 024018 194 TFNLFIANLSFEA------RAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM-CLV 266 (274)
Q Consensus 194 ~~~l~V~nlp~~~------~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~-g~~ 266 (274)
...++|.|+|.-- -..-|.++|++ +|++....++.+..+| .+||.|++|.+..+|+.|++.|||..++ +.+
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk-~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSK-AGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHh-hccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 4678888888322 23457789998 8999999888888765 8999999999999999999999999987 455
Q ss_pred EEE
Q 024018 267 IAL 269 (274)
Q Consensus 267 i~v 269 (274)
..|
T Consensus 136 f~v 138 (698)
T KOG2314|consen 136 FFV 138 (698)
T ss_pred EEe
Confidence 554
No 162
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.70 E-value=0.0001 Score=62.43 Aligned_cols=77 Identities=13% Similarity=0.213 Sum_probs=60.4
Q ss_pred cceEEecCCccccHHHH------HHHHhhcCCceEEEEEEEcCCC-CCCcc--EEEEEEcCHHHHHHHHHHhCCceeCCe
Q 024018 195 FNLFIANLSFEARAKDL------REFFISEGWDVVSAEVIFHDNP-RRSAG--YGFVSFKSKKVAETAISAFQGKVIMCL 265 (274)
Q Consensus 195 ~~l~V~nlp~~~~~~~l------~~~f~~~~G~v~~~~i~~~~~~-g~~~g--~afV~f~~~~~a~~A~~~l~g~~i~g~ 265 (274)
.-+||-+|+..+..+++ .++|.. ||.|..+.|-+.-.+ ....+ -.||.|.+.+||.+||...+|..++||
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQ-yGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQ-YGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhh-ccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 45889999988877662 489998 999999877655311 11122 259999999999999999999999999
Q ss_pred EEEEEEe
Q 024018 266 VIALSYL 272 (274)
Q Consensus 266 ~i~v~~a 272 (274)
.|+.+|.
T Consensus 194 ~lkatYG 200 (480)
T COG5175 194 VLKATYG 200 (480)
T ss_pred eEeeecC
Confidence 9999874
No 163
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.62 E-value=3.6e-05 Score=62.81 Aligned_cols=72 Identities=21% Similarity=0.163 Sum_probs=61.6
Q ss_pred ccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCC--------CCC----ccEEEEEEcCHHHHHHHHHHhCCce
Q 024018 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNP--------RRS----AGYGFVSFKSKKVAETAISAFQGKV 261 (274)
Q Consensus 194 ~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~--------g~~----~g~afV~f~~~~~a~~A~~~l~g~~ 261 (274)
...||+++||..+.-..|+++|+. ||.|-.|.+-....+ |.. ..-|+|+|.+...|..+...|||..
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~-yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQ-YGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHh-ccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 568999999999999999999998 999999988765444 222 2248999999999999999999999
Q ss_pred eCCeE
Q 024018 262 IMCLV 266 (274)
Q Consensus 262 i~g~~ 266 (274)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99864
No 164
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.57 E-value=0.00048 Score=49.08 Aligned_cols=78 Identities=19% Similarity=0.224 Sum_probs=53.1
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCceEEEE-Eeec-------CCCCceeEEEEEECCHHHHHHHHHHcCCCeecCc-
Q 024018 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIE-LSMH-------SKNRNRGLAFVTMGSPDEATAALNNLESYEFEGR- 169 (274)
Q Consensus 99 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~-~~~~-------~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~- 169 (274)
..+.|.|-+.|+. ....+.+.|++||.|.+.. +.++ +......+..|.|.++.+|.+||.. ||..+.|.
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcE
Confidence 4566899999988 5578889999999987764 1111 1112356899999999999999994 99999886
Q ss_pred EEEEeeccc
Q 024018 170 TLKVNYAKI 178 (274)
Q Consensus 170 ~i~v~~~~~ 178 (274)
.+-|.+.+.
T Consensus 83 mvGV~~~~~ 91 (100)
T PF05172_consen 83 MVGVKPCDP 91 (100)
T ss_dssp EEEEEE-HH
T ss_pred EEEEEEcHH
Confidence 444666643
No 165
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.52 E-value=6.3e-05 Score=61.39 Aligned_cols=72 Identities=18% Similarity=0.158 Sum_probs=61.3
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCC---------CCcee----EEEEEECCHHHHHHHHHHcCCCe
Q 024018 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK---------NRNRG----LAFVTMGSPDEATAALNNLESYE 165 (274)
Q Consensus 99 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~---------~~~~g----~afv~f~~~~~a~~a~~~l~~~~ 165 (274)
....||+++||+.++..-|+++|+.||.|-.|.+..... |...+ -|.|+|.+...|.++...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 557899999999999999999999999999999876431 22222 38899999999999999999999
Q ss_pred ecCcE
Q 024018 166 FEGRT 170 (274)
Q Consensus 166 ~~g~~ 170 (274)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99875
No 166
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.48 E-value=0.00033 Score=61.23 Aligned_cols=71 Identities=11% Similarity=0.141 Sum_probs=58.5
Q ss_pred CCCCCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEc---CCCC--CC--------ccEEEEEEcCHHHHHHHH
Q 024018 188 QPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFH---DNPR--RS--------AGYGFVSFKSKKVAETAI 254 (274)
Q Consensus 188 ~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~---~~~g--~~--------~g~afV~f~~~~~a~~A~ 254 (274)
.....++++|.+.|||.+-.-+-|.++|+. +|.|+.|+|... +..+ .+ +-+|+|+|+..+.|.+|.
T Consensus 225 ~~eel~srtivaenLP~Dh~~enl~kiFg~-~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~ 303 (484)
T KOG1855|consen 225 DEEELPSRTIVAENLPLDHSYENLSKIFGT-VGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAR 303 (484)
T ss_pred cccccccceEEEecCCcchHHHHHHHHhhc-ccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHH
Confidence 334457899999999999999999999998 999999999876 3222 22 457999999999999999
Q ss_pred HHhCC
Q 024018 255 SAFQG 259 (274)
Q Consensus 255 ~~l~g 259 (274)
+.|+.
T Consensus 304 e~~~~ 308 (484)
T KOG1855|consen 304 ELLNP 308 (484)
T ss_pred Hhhch
Confidence 98753
No 167
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.48 E-value=5e-05 Score=62.07 Aligned_cols=65 Identities=22% Similarity=0.402 Sum_probs=55.3
Q ss_pred HHHHHHHh-ccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeecccc
Q 024018 115 EDIRALFE-QHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179 (274)
Q Consensus 115 ~~L~~~f~-~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 179 (274)
+++...|+ +||+|+.+.+..+..-.-.|-+||.|...++|++|+..||+..+.|++|...+..-.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT 148 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVT 148 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcC
Confidence 44555555 899999998876655567899999999999999999999999999999999887654
No 168
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.46 E-value=0.0005 Score=61.58 Aligned_cols=63 Identities=19% Similarity=0.306 Sum_probs=57.7
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHh-ccCceEEEEEeecCC-CCceeEEEEEECCHHHHHHHHHH
Q 024018 98 YSKTRLVAQNVPWTSTHEDIRALFE-QHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160 (274)
Q Consensus 98 ~~~~~l~v~nLp~~~t~~~L~~~f~-~~G~v~~v~~~~~~~-~~~~g~afv~f~~~~~a~~a~~~ 160 (274)
...+|||||+||--++.++|..+|. -||.|..+-|=.|.+ +.++|-|=|+|.+..+-.+||..
T Consensus 368 DprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 368 DPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 3578999999999999999999999 799999999988854 89999999999999999999974
No 169
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.37 E-value=0.00077 Score=42.18 Aligned_cols=52 Identities=23% Similarity=0.298 Sum_probs=41.0
Q ss_pred cceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHH
Q 024018 195 FNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAI 254 (274)
Q Consensus 195 ~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~ 254 (274)
+.|-|.|.+....+ .+...|.. ||.|.++.+. ......+|.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~-fGeI~~~~~~------~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFAS-FGEIVDIYVP------ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHh-cCCEEEEEcC------CCCcEEEEEECCHHHHHhhC
Confidence 45778888877664 45558887 9999998774 23568999999999999985
No 170
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.33 E-value=0.00019 Score=62.77 Aligned_cols=68 Identities=22% Similarity=0.351 Sum_probs=57.8
Q ss_pred ccCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeec---C---CCCc--------eeEEEEEECCHHHHHHHHHHc
Q 024018 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH---S---KNRN--------RGLAFVTMGSPDEATAALNNL 161 (274)
Q Consensus 96 ~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~---~---~~~~--------~g~afv~f~~~~~a~~a~~~l 161 (274)
++...++|.+.|||.+-..+.|.++|+.+|.|..|+|+.- . .|.+ +-+|+|+|...+.|.+|.+.|
T Consensus 227 eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 227 EELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred cccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 4568899999999999999999999999999999999865 2 1222 457999999999999999977
Q ss_pred CC
Q 024018 162 ES 163 (274)
Q Consensus 162 ~~ 163 (274)
+.
T Consensus 307 ~~ 308 (484)
T KOG1855|consen 307 NP 308 (484)
T ss_pred ch
Confidence 54
No 171
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.29 E-value=0.0027 Score=45.27 Aligned_cols=76 Identities=7% Similarity=0.089 Sum_probs=51.3
Q ss_pred ccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcC-------CCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCe-
Q 024018 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD-------NPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCL- 265 (274)
Q Consensus 194 ~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~-------~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~- 265 (274)
...|.|-+.|.. ....|.+.|++ ||.|.+..-.... ......+...|.|+++.+|.+||.. ||..+.|.
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~-~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~ 82 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSS-FGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSL 82 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHC-CS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHh-cceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcE
Confidence 456888899888 45678888998 9998776411000 0113467899999999999999995 99999885
Q ss_pred EEEEEEe
Q 024018 266 VIALSYL 272 (274)
Q Consensus 266 ~i~v~~a 272 (274)
.+-|.|+
T Consensus 83 mvGV~~~ 89 (100)
T PF05172_consen 83 MVGVKPC 89 (100)
T ss_dssp EEEEEE-
T ss_pred EEEEEEc
Confidence 5556664
No 172
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.26 E-value=0.00013 Score=59.62 Aligned_cols=63 Identities=16% Similarity=0.103 Sum_probs=50.6
Q ss_pred HHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 024018 209 KDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSYL 272 (274)
Q Consensus 209 ~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a 272 (274)
+++...|+..||.|+++.|..+-. -.-+|-++|.|...++|++|+..|||.++.|++|...+.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~-~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLG-DHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccc-hhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 456666663489999987654422 245788999999999999999999999999999988764
No 173
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.20 E-value=0.0014 Score=54.79 Aligned_cols=66 Identities=17% Similarity=0.254 Sum_probs=54.2
Q ss_pred HHHHHHHHhccCceEEEEEeecCCC--CceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeecccc
Q 024018 114 HEDIRALFEQHGTVLDIELSMHSKN--RNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179 (274)
Q Consensus 114 ~~~L~~~f~~~G~v~~v~~~~~~~~--~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 179 (274)
++++++..++||.|..|.|.-.+.. .-.--.||+|...++|.+|+-.|||..|+||.++..+....
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~e 367 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNLE 367 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccHH
Confidence 5677888999999999988776531 22335899999999999999999999999999998877643
No 174
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.12 E-value=0.0021 Score=48.71 Aligned_cols=59 Identities=27% Similarity=0.379 Sum_probs=46.0
Q ss_pred HHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeecccccC
Q 024018 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKK 181 (274)
Q Consensus 115 ~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~ 181 (274)
.+|.+.|..||.+.=+++. .+.-+|+|.+-+.|.+|+. ++|..+.|+.|+|+...+...
T Consensus 51 ~~ll~~~~~~GevvLvRfv-------~~~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtpdW~ 109 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFV-------GDTMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTPDWL 109 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEE-------TTCEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE------
T ss_pred HHHHHHHHhCCceEEEEEe-------CCeEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCccHH
Confidence 3677788999998878776 4568999999999999999 899999999999998776543
No 175
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.11 E-value=0.00049 Score=58.68 Aligned_cols=72 Identities=15% Similarity=0.235 Sum_probs=62.1
Q ss_pred ccceEEecCCccccHHHHHHHHhhcCC--ceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeE
Q 024018 194 TFNLFIANLSFEARAKDLREFFISEGW--DVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLV 266 (274)
Q Consensus 194 ~~~l~V~nlp~~~~~~~l~~~f~~~~G--~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~ 266 (274)
..++||+||-+.++++||.+.+.. -| .+.+++++.+...|.++|||+|...+..+..+.++.|-.+.|.|+.
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S-~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~ 153 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQS-TGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQS 153 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHh-hhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCC
Confidence 467999999999999999888876 55 4566677777778999999999999999999999999999998863
No 176
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.01 E-value=0.00062 Score=61.89 Aligned_cols=78 Identities=17% Similarity=0.090 Sum_probs=64.8
Q ss_pred CCCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCcee---CCeE
Q 024018 190 KPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI---MCLV 266 (274)
Q Consensus 190 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i---~g~~ 266 (274)
....++.|+|.||-..+|.-+|+.++.+-+|.|.+.+|- +-+..|||.|.+.++|.....+|||..+ +++.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmD------kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMD------KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHHH------HhhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 445578999999999999999999999757788777442 2356799999999999999999999765 3688
Q ss_pred EEEEEee
Q 024018 267 IALSYLY 273 (274)
Q Consensus 267 i~v~~a~ 273 (274)
|.+.|++
T Consensus 514 L~adf~~ 520 (718)
T KOG2416|consen 514 LIADFVR 520 (718)
T ss_pred eEeeecc
Confidence 8888864
No 177
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.88 E-value=0.0094 Score=52.81 Aligned_cols=67 Identities=15% Similarity=0.204 Sum_probs=58.2
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHhccCc-eEEEEEeecCCCCceeE-EEEEECCHHHHHHHHHHcCCCeecC
Q 024018 100 KTRLVAQNVPWTSTHEDIRALFEQHGT-VLDIELSMHSKNRNRGL-AFVTMGSPDEATAALNNLESYEFEG 168 (274)
Q Consensus 100 ~~~l~v~nLp~~~t~~~L~~~f~~~G~-v~~v~~~~~~~~~~~g~-afv~f~~~~~a~~a~~~l~~~~~~g 168 (274)
.+.|.|-.+|..++..||..|...+-. |.++++++| |.+..| ..|.|++.++|......+||..|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd--~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRD--GMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeec--CCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 788999999999999999999987765 999999985 444444 7899999999999999999988854
No 178
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.83 E-value=0.01 Score=45.01 Aligned_cols=71 Identities=15% Similarity=0.121 Sum_probs=50.3
Q ss_pred CCCccceEEecCC------ccccH---HHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCce
Q 024018 191 PFATFNLFIANLS------FEARA---KDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKV 261 (274)
Q Consensus 191 ~~~~~~l~V~nlp------~~~~~---~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~ 261 (274)
.++..++.|.-+. ....+ ++|-+.|.. ||.|.=++++. +.-+|.|.+-+.|.+|+. ++|..
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~-~GevvLvRfv~--------~~mwVTF~dg~sALaals-~dg~~ 93 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQ-YGEVVLVRFVG--------DTMWVTFRDGQSALAALS-LDGIQ 93 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHC-CS-ECEEEEET--------TCEEEEESSCHHHHHHHH-GCCSE
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHh-CCceEEEEEeC--------CeEEEEECccHHHHHHHc-cCCcE
Confidence 3445666665544 22232 367778887 89988777653 348999999999999999 79999
Q ss_pred eCCeEEEEEE
Q 024018 262 IMCLVIALSY 271 (274)
Q Consensus 262 i~g~~i~v~~ 271 (274)
+.|+.|+|+.
T Consensus 94 v~g~~l~i~L 103 (146)
T PF08952_consen 94 VNGRTLKIRL 103 (146)
T ss_dssp ETTEEEEEEE
T ss_pred ECCEEEEEEe
Confidence 9999999974
No 179
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=96.68 E-value=0.079 Score=44.63 Aligned_cols=163 Identities=14% Similarity=0.169 Sum_probs=106.0
Q ss_pred ccCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecC--------CCCceeEEEEEECCHHHHHHHH----HHcCC
Q 024018 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS--------KNRNRGLAFVTMGSPDEATAAL----NNLES 163 (274)
Q Consensus 96 ~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~--------~~~~~g~afv~f~~~~~a~~a~----~~l~~ 163 (274)
++...|.|.+.|+...++-..+..-|-+||+|++|.++.+. .........+.|-+.+.+.... +.|..
T Consensus 11 D~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsE 90 (309)
T PF10567_consen 11 DEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSE 90 (309)
T ss_pred ccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHH
Confidence 56677889999999999999999999999999999999765 1234567889999998875432 32322
Q ss_pred --CeecCcEEEEeecccccCCCC------CC-----------CCCCCCCccceEEecCCccccHHHHHHHHh---hcCC-
Q 024018 164 --YEFEGRTLKVNYAKIKKKNPF------PP-----------VQPKPFATFNLFIANLSFEARAKDLREFFI---SEGW- 220 (274)
Q Consensus 164 --~~~~g~~i~v~~~~~~~~~~~------~~-----------~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~---~~~G- 220 (274)
..+.-..+.+.+...+-.... .. .-....+++.|.|.--..-..++-+.+.+. . -+
T Consensus 91 fK~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~~~~~~~dl~~~kL~fL~~-~~n 169 (309)
T PF10567_consen 91 FKTKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFKDPVDKDDLIEKKLPFLKN-SNN 169 (309)
T ss_pred HHHhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEecCccchhHHHHHhhhhhcc-CCC
Confidence 345556677766553221111 00 112334567777764433223333443332 1 12
Q ss_pred ---ceEEEEEEEcCCC--CCCccEEEEEEcCHHHHHHHHHHhCC
Q 024018 221 ---DVVSAEVIFHDNP--RRSAGYGFVSFKSKKVAETAISAFQG 259 (274)
Q Consensus 221 ---~v~~~~i~~~~~~--g~~~g~afV~f~~~~~a~~A~~~l~g 259 (274)
.++++.++..... .-+..||.+.|-+...|...++.|..
T Consensus 170 ~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~ 213 (309)
T PF10567_consen 170 KRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKS 213 (309)
T ss_pred ceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHh
Confidence 4677777755332 23788999999999999999987763
No 180
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.59 E-value=0.029 Score=40.73 Aligned_cols=68 Identities=10% Similarity=0.144 Sum_probs=49.3
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCc-eEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeec
Q 024018 99 SKTRLVAQNVPWTSTHEDIRALFEQHGT-VLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFE 167 (274)
Q Consensus 99 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~-v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~ 167 (274)
....+.+...|..++.++|..+.+.+-. |..++|+++... .+=.+.+.|++.++|+.....+||+.+.
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~p-nrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTP-NRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCC-ceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 3444555555666666777766666554 788888876432 3446889999999999999999998774
No 181
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.51 E-value=0.017 Score=37.11 Aligned_cols=55 Identities=22% Similarity=0.196 Sum_probs=42.3
Q ss_pred cceEEecCCccccHHHHHHHHhhcCC--ceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHh
Q 024018 195 FNLFIANLSFEARAKDLREFFISEGW--DVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAF 257 (274)
Q Consensus 195 ~~l~V~nlp~~~~~~~l~~~f~~~~G--~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l 257 (274)
..|+|+|++ .++-++|+.+|..+|. ....+..+-|. -|-|.|.+.+.|.+|+.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 569999985 4777899999998432 34456665443 2889999999999999875
No 182
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.50 E-value=0.002 Score=58.70 Aligned_cols=78 Identities=17% Similarity=0.281 Sum_probs=63.5
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHh-ccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCee---cCcEEE
Q 024018 97 EYSKTRLVAQNVPWTSTHEDIRALFE-QHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEF---EGRTLK 172 (274)
Q Consensus 97 ~~~~~~l~v~nLp~~~t~~~L~~~f~-~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~---~g~~i~ 172 (274)
...++.|||.||-.-.|..+|+.+++ .+|.|+...| | +-+..|||.|.+.++|.+.+..|||..+ +++.|.
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--D---kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ 515 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--D---KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLI 515 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHHHH--H---HhhcceeEecccHHHHHHHHHHHhccccCCCCCceeE
Confidence 34568899999999999999999999 5666777622 2 2367899999999999999999999887 567888
Q ss_pred Eeecccc
Q 024018 173 VNYAKIK 179 (274)
Q Consensus 173 v~~~~~~ 179 (274)
+.|....
T Consensus 516 adf~~~d 522 (718)
T KOG2416|consen 516 ADFVRAD 522 (718)
T ss_pred eeecchh
Confidence 8887643
No 183
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.49 E-value=0.0033 Score=51.65 Aligned_cols=75 Identities=13% Similarity=0.166 Sum_probs=62.5
Q ss_pred CeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCC----CeecCcEEEEee
Q 024018 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLES----YEFEGRTLKVNY 175 (274)
Q Consensus 101 ~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~----~~~~g~~i~v~~ 175 (274)
..|||.||...+..+.|..-|+.||+|+...++-|..+++.+-++|.|...-.|.+|++...- ....+++.-|..
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 569999999999999999999999999988888888899999999999999999999987632 233445544443
No 184
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.49 E-value=0.054 Score=45.70 Aligned_cols=73 Identities=19% Similarity=0.183 Sum_probs=56.4
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCc-EEEEeeccc
Q 024018 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGR-TLKVNYAKI 178 (274)
Q Consensus 100 ~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~-~i~v~~~~~ 178 (274)
..=|-|-++|+.-. .-|..+|++||.|+++.... ...+-+|.|.+.-+|++||. .+|..|+|. .|=|+.+..
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~-----ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCtD 269 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPS-----NGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCTD 269 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecCC-----CCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecCC
Confidence 56688889988765 45667899999998876642 25689999999999999999 499998876 344665444
Q ss_pred c
Q 024018 179 K 179 (274)
Q Consensus 179 ~ 179 (274)
+
T Consensus 270 k 270 (350)
T KOG4285|consen 270 K 270 (350)
T ss_pred H
Confidence 3
No 185
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.44 E-value=0.026 Score=36.32 Aligned_cols=56 Identities=21% Similarity=0.215 Sum_probs=44.6
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhcc---CceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHc
Q 024018 99 SKTRLVAQNVPWTSTHEDIRALFEQH---GTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNL 161 (274)
Q Consensus 99 ~~~~l~v~nLp~~~t~~~L~~~f~~~---G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l 161 (274)
...+|+|.|+. +.+.++|+.+|..| .....|.++.| .-|-|.|.+.+.|.+|+..|
T Consensus 4 rpeavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdD------tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 4 RPEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDD------TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred eeceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecC------CcEEEEECCHHHHHHHHHcC
Confidence 34579999995 57789999999998 12556777765 35889999999999999754
No 186
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.41 E-value=0.025 Score=42.48 Aligned_cols=73 Identities=18% Similarity=0.067 Sum_probs=55.5
Q ss_pred CCCccceEEecCCccc----cHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeE
Q 024018 191 PFATFNLFIANLSFEA----RAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLV 266 (274)
Q Consensus 191 ~~~~~~l~V~nlp~~~----~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~ 266 (274)
.++..+|.|+=|...+ +...+...++. ||.|.+|... ++.-|.|.|++..+|-+|+.+++. ...|..
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~-fGpI~SVT~c-------GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm 153 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSV-FGPIQSVTLC-------GRQSAVVVFKDITSACKAVSAFQS-RAPGTM 153 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHh-cCCcceeeec-------CCceEEEEehhhHHHHHHHHhhcC-CCCCce
Confidence 4557888887555433 44456667776 9999999775 345699999999999999999776 566888
Q ss_pred EEEEEe
Q 024018 267 IALSYL 272 (274)
Q Consensus 267 i~v~~a 272 (274)
+.++|-
T Consensus 154 ~qCsWq 159 (166)
T PF15023_consen 154 FQCSWQ 159 (166)
T ss_pred EEeecc
Confidence 888874
No 187
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.36 E-value=0.0057 Score=58.44 Aligned_cols=80 Identities=23% Similarity=0.303 Sum_probs=68.7
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecC--cEEEEe
Q 024018 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEG--RTLKVN 174 (274)
Q Consensus 97 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g--~~i~v~ 174 (274)
....+.+++|+|.+++....|...|..||.|..|.+-. | .-||||.|.+...+..|+..|.|..|+| +.++|.
T Consensus 452 st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h---g--q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvd 526 (975)
T KOG0112|consen 452 STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH---G--QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVD 526 (975)
T ss_pred cccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc---C--CcceeeecccCccchhhHHHHhcCcCCCCCcccccc
Confidence 44567899999999999999999999999999887642 2 5699999999999999999999999976 678888
Q ss_pred ecccccC
Q 024018 175 YAKIKKK 181 (274)
Q Consensus 175 ~~~~~~~ 181 (274)
++.....
T Consensus 527 la~~~~~ 533 (975)
T KOG0112|consen 527 LASPPGA 533 (975)
T ss_pred cccCCCC
Confidence 8876533
No 188
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.98 E-value=0.012 Score=46.63 Aligned_cols=82 Identities=13% Similarity=0.177 Sum_probs=50.6
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhc-cCce---EEEEEeecC-C-C-CceeEEEEEECCHHHHHHHHHHcCCCeecCc
Q 024018 97 EYSKTRLVAQNVPWTSTHEDIRALFEQ-HGTV---LDIELSMHS-K-N-RNRGLAFVTMGSPDEATAALNNLESYEFEGR 169 (274)
Q Consensus 97 ~~~~~~l~v~nLp~~~t~~~L~~~f~~-~G~v---~~v~~~~~~-~-~-~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~ 169 (274)
+....+|.|++||++.|++++++.+.. ++.- ..+.-.... . + ....-|||.|.+.+++....+.++|..|.+.
T Consensus 4 ~~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~ 83 (176)
T PF03467_consen 4 EKEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDS 83 (176)
T ss_dssp -----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-T
T ss_pred cccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECC
Confidence 345668999999999999999997776 5554 233311222 1 1 2244699999999999999999999887442
Q ss_pred -----EEEEeeccc
Q 024018 170 -----TLKVNYAKI 178 (274)
Q Consensus 170 -----~i~v~~~~~ 178 (274)
.-.|++|.-
T Consensus 84 kg~~~~~~VE~Apy 97 (176)
T PF03467_consen 84 KGNEYPAVVEFAPY 97 (176)
T ss_dssp TS-EEEEEEEE-SS
T ss_pred CCCCcceeEEEcch
Confidence 445666654
No 189
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.84 E-value=0.0031 Score=53.85 Aligned_cols=81 Identities=17% Similarity=0.327 Sum_probs=63.6
Q ss_pred CCCeEEEeCCCCCCCHHHHH---HHHhccCceEEEEEeecC--CCC--ceeEEEEEECCHHHHHHHHHHcCCCeecCcEE
Q 024018 99 SKTRLVAQNVPWTSTHEDIR---ALFEQHGTVLDIELSMHS--KNR--NRGLAFVTMGSPDEATAALNNLESYEFEGRTL 171 (274)
Q Consensus 99 ~~~~l~v~nLp~~~t~~~L~---~~f~~~G~v~~v~~~~~~--~~~--~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i 171 (274)
..+-+||-+|+.....+++. ++|.+||.|..|.+..+. ... ...-++|+|...++|..||...+|..++|+.+
T Consensus 76 qknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 76 QKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 45678999999887655554 488899999999888765 211 12238999999999999999999999999998
Q ss_pred EEeecccc
Q 024018 172 KVNYAKIK 179 (274)
Q Consensus 172 ~v~~~~~~ 179 (274)
+..+...+
T Consensus 156 ka~~gttk 163 (327)
T KOG2068|consen 156 KASLGTTK 163 (327)
T ss_pred HHhhCCCc
Confidence 77776654
No 190
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.79 E-value=0.16 Score=36.95 Aligned_cols=68 Identities=15% Similarity=0.105 Sum_probs=53.7
Q ss_pred ccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeC
Q 024018 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263 (274)
Q Consensus 194 ~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~ 263 (274)
...+.+...|..++.++|..+.+.+-..|..++|++|.. ..+-.++++|.+.++|..-....||+.+.
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 344556666777777888877777556788888888754 35678999999999999999999999875
No 191
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.77 E-value=0.033 Score=41.86 Aligned_cols=75 Identities=15% Similarity=0.188 Sum_probs=55.8
Q ss_pred cCCCCeEEEeCCCCCC----CHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEE
Q 024018 97 EYSKTRLVAQNVPWTS----THEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172 (274)
Q Consensus 97 ~~~~~~l~v~nLp~~~----t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~ 172 (274)
+..-.+|.|+=|..++ +-..+...++.||+|.+|.+.- +..|.|.|++..+|-+|+..++. ..-|..++
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG------rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~q 155 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG------RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQ 155 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC------CceEEEEehhhHHHHHHHHhhcC-CCCCceEE
Confidence 3345678887665554 3344555678899999998852 66899999999999999998654 66778888
Q ss_pred Eeeccc
Q 024018 173 VNYAKI 178 (274)
Q Consensus 173 v~~~~~ 178 (274)
+.|-..
T Consensus 156 CsWqqr 161 (166)
T PF15023_consen 156 CSWQQR 161 (166)
T ss_pred eecccc
Confidence 877543
No 192
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=95.67 E-value=0.04 Score=50.18 Aligned_cols=97 Identities=16% Similarity=0.187 Sum_probs=66.4
Q ss_pred CHHHHHHHHHHcCCCeecCcEEEEeecccccCCCCCCCCCCCCCccceEEecCCccccHHHHHHHHhh-cCCceEEEEEE
Q 024018 150 SPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS-EGWDVVSAEVI 228 (274)
Q Consensus 150 ~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~-~~G~v~~~~i~ 228 (274)
|.+-...+++..-+..++.+-.+|+.... .+.+.++.||..+.+|+++.+|+. -+..+++|.+-
T Consensus 146 DvdLI~Evlresp~VqvDekgekVrp~~k---------------RcIvilREIpettp~e~Vk~lf~~encPk~iscefa 210 (684)
T KOG2591|consen 146 DVDLIVEVLRESPNVQVDEKGEKVRPNHK---------------RCIVILREIPETTPIEVVKALFKGENCPKVISCEFA 210 (684)
T ss_pred chHHHHHHHhcCCCceeccCccccccCcc---------------eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeee
Confidence 34444455655555555555544443321 477889999999999999999984 13577788776
Q ss_pred EcCCCCCCccEEEEEEcCHHHHHHHHHHhCC--ceeCCeEEE
Q 024018 229 FHDNPRRSAGYGFVSFKSKKVAETAISAFQG--KVIMCLVIA 268 (274)
Q Consensus 229 ~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g--~~i~g~~i~ 268 (274)
.++. =||.|++..||+.|.+.|.- +.|.|+.|.
T Consensus 211 ~N~n-------WyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 211 HNDN-------WYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred ecCc-------eEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 5542 68999999999999888763 335555543
No 193
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=95.43 E-value=0.016 Score=40.17 Aligned_cols=73 Identities=11% Similarity=0.100 Sum_probs=49.0
Q ss_pred EEEEECCHHHHHHHHHHcCC--CeecCcEEEEeecccccCCCCCCCCCCCCCccceEEecCCccccHHHHHHHHhh
Q 024018 144 AFVTMGSPDEATAALNNLES--YEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217 (274)
Q Consensus 144 afv~f~~~~~a~~a~~~l~~--~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~ 217 (274)
|+|+|.+++-|++.++. .. ..+++..+.|....-.......-.-......++|.|.|||...++++|++.++=
T Consensus 1 AlITF~e~~VA~~i~~~-~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~LeI 75 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKK-KKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLEI 75 (88)
T ss_pred CEEEeCcHHHHHHHHhC-CEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEEE
Confidence 68999999999999873 32 445666666655443322211111122334688999999999999999988763
No 194
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.37 E-value=0.095 Score=35.70 Aligned_cols=56 Identities=23% Similarity=0.336 Sum_probs=42.1
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcC
Q 024018 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLE 162 (274)
Q Consensus 99 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~ 162 (274)
.....||+ .|..+...||.++|+.||.|. |..+. ..-|||...+.+.|..++..+.
T Consensus 8 RdHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~------dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 8 RDHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIN------DTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp GCCEEEEE---TT--HHHHHHHCCCCCCEE-EEEEC------TTEEEEEECCCHHHHHHHHHHT
T ss_pred cceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEc------CCcEEEEeecHHHHHHHHHHhc
Confidence 34556666 999999999999999999875 55543 4579999999999999988765
No 195
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.37 E-value=0.069 Score=42.60 Aligned_cols=60 Identities=18% Similarity=0.074 Sum_probs=45.1
Q ss_pred cHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhC--CceeCCeEEEEEEee
Q 024018 207 RAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ--GKVIMCLVIALSYLY 273 (274)
Q Consensus 207 ~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~--g~~i~g~~i~v~~a~ 273 (274)
..+.|+++|.. ++.+..+...+ +-+-..|.|.+.++|.+|...|+ +..+.|..+++-|+.
T Consensus 8 ~~~~l~~l~~~-~~~~~~~~~L~------sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~ 69 (184)
T PF04847_consen 8 NLAELEELFST-YDPPVQFSPLK------SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQ 69 (184)
T ss_dssp -HHHHHHHHHT-T-SS-EEEEET------TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE---
T ss_pred hHHHHHHHHHh-cCCceEEEEcC------CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcc
Confidence 45789999998 88888776663 34459999999999999999999 999999999998874
No 196
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.32 E-value=0.051 Score=43.32 Aligned_cols=63 Identities=19% Similarity=0.260 Sum_probs=47.6
Q ss_pred CHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcC--CCeecCcEEEEeeccccc
Q 024018 113 THEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLE--SYEFEGRTLKVNYAKIKK 180 (274)
Q Consensus 113 t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~--~~~~~g~~i~v~~~~~~~ 180 (274)
..+.|+++|..++.+..+..++. -+-..|.|.+.++|.+|...|+ +..+.|..+++.++....
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s-----FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS-----FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT-----TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHhcCCceEEEEcCC-----CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 45889999999999888877754 6678999999999999999999 999999999999985443
No 197
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=95.24 E-value=0.011 Score=52.76 Aligned_cols=78 Identities=21% Similarity=0.256 Sum_probs=63.7
Q ss_pred cCCCCeEEEeCCCCCC-CHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEee
Q 024018 97 EYSKTRLVAQNVPWTS-THEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (274)
Q Consensus 97 ~~~~~~l~v~nLp~~~-t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 175 (274)
..+.+.|-+.-.|+.. +.++|...|.+||.|++|.+-.. --.|.|+|.+..+|-+|.. .++..|++|.|+|.|
T Consensus 369 ~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~-----~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~w 442 (526)
T KOG2135|consen 369 VVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS-----SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFW 442 (526)
T ss_pred hcccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc-----hhhheeeeeccccccchhc-cccceecCceeEEEE
Confidence 3445556666666664 77899999999999999988433 4579999999999988877 599999999999999
Q ss_pred ccccc
Q 024018 176 AKIKK 180 (274)
Q Consensus 176 ~~~~~ 180 (274)
-++..
T Consensus 443 hnps~ 447 (526)
T KOG2135|consen 443 HNPSP 447 (526)
T ss_pred ecCCc
Confidence 98854
No 198
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=95.18 E-value=0.036 Score=48.34 Aligned_cols=74 Identities=12% Similarity=0.081 Sum_probs=59.1
Q ss_pred cceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCC---CCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 024018 195 FNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDN---PRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALS 270 (274)
Q Consensus 195 ~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~---~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~ 270 (274)
..|.|.||...++.++++.+|.. .|+|.++.++.... -......|||.|.+...+..|-. |.++.+-|+.|.|-
T Consensus 8 ~vIqvanispsat~dqm~tlFg~-lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~ 84 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGN-LGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVR 84 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhh-ccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEE
Confidence 47999999999999999999996 89999998876421 12345689999999888876655 78888878777664
No 199
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=95.10 E-value=0.015 Score=55.43 Aligned_cols=71 Identities=23% Similarity=0.158 Sum_probs=61.0
Q ss_pred ceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeC--CeEEEEEEee
Q 024018 196 NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM--CLVIALSYLY 273 (274)
Q Consensus 196 ~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~--g~~i~v~~a~ 273 (274)
+..+.|.+-..+-..|..+|.. ||.|.+.+..++. ..|.|+|...+.|..|+++|+|.++- |-+.+|.||+
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~-yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSD-YGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAK 372 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHh-hcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecc
Confidence 4555666777788899999999 9999999887764 46999999999999999999999864 8889999987
No 200
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=95.04 E-value=0.023 Score=49.99 Aligned_cols=70 Identities=27% Similarity=0.399 Sum_probs=54.7
Q ss_pred cceEEecCCccccHHHHHHHHhhcCCceE-EEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCce-eCCeEEEEEEe
Q 024018 195 FNLFIANLSFEARAKDLREFFISEGWDVV-SAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKV-IMCLVIALSYL 272 (274)
Q Consensus 195 ~~l~V~nlp~~~~~~~l~~~f~~~~G~v~-~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~-i~g~~i~v~~a 272 (274)
..+|++||....+..++..+|.. . .+- .-.++ ...||+||.+.+...|.+|++.++|.. +.|.++.+.+.
T Consensus 2 nklyignL~p~~~psdl~svfg~-a-k~~~~g~fl------~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~s 73 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGD-A-KIPGSGQFL------VKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHS 73 (584)
T ss_pred CcccccccCCCCChHHHHHHhcc-c-cCCCCccee------eecceeeccCCchhhhhhhHHhhchhhhhcCceeeccch
Confidence 46899999999999999999986 3 111 11111 136899999999999999999999864 67998888753
No 201
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.95 E-value=0.021 Score=45.36 Aligned_cols=70 Identities=13% Similarity=0.116 Sum_probs=45.0
Q ss_pred ccceEEecCCccccHHHHHHHHhhcCCce---EEEEEEEcCCC-C-CCccEEEEEEcCHHHHHHHHHHhCCceeC
Q 024018 194 TFNLFIANLSFEARAKDLREFFISEGWDV---VSAEVIFHDNP-R-RSAGYGFVSFKSKKVAETAISAFQGKVIM 263 (274)
Q Consensus 194 ~~~l~V~nlp~~~~~~~l~~~f~~~~G~v---~~~~i~~~~~~-g-~~~g~afV~f~~~~~a~~A~~~l~g~~i~ 263 (274)
...|.|++||..++++++.+.+...++.- .++.-...... + ....-|||.|.+.+++..-...++|..+.
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~ 81 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFV 81 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEE
Confidence 46899999999999999999666634433 22221122111 1 12446999999999999999999998775
No 202
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=94.53 E-value=0.1 Score=49.92 Aligned_cols=74 Identities=23% Similarity=0.265 Sum_probs=63.8
Q ss_pred CeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCee--cCcEEEEeeccc
Q 024018 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEF--EGRTLKVNYAKI 178 (274)
Q Consensus 101 ~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~--~g~~i~v~~~~~ 178 (274)
.+.++.|.+-+.+-.-|..+|.+||.|.+.+..++ -..|.|+|...+.|..|++.|+|+.+ -|-+.+|.+++.
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~-----~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRD-----LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhcchhhheeccc-----ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 34667788888899999999999999999988876 66899999999999999999999765 577888888875
Q ss_pred c
Q 024018 179 K 179 (274)
Q Consensus 179 ~ 179 (274)
-
T Consensus 374 ~ 374 (1007)
T KOG4574|consen 374 L 374 (1007)
T ss_pred c
Confidence 4
No 203
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=94.53 E-value=0.27 Score=32.11 Aligned_cols=55 Identities=13% Similarity=0.092 Sum_probs=43.0
Q ss_pred CCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEE
Q 024018 111 TSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKV 173 (274)
Q Consensus 111 ~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v 173 (274)
.++-++++..+..|+- ..| ..|+ .--||.|.+.++|+++....+|..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I--~~d~-----tGfYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRI--RDDR-----TGFYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-ceE--EecC-----CEEEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 5678999999999963 333 3443 23579999999999999999999888877665
No 204
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=94.25 E-value=0.29 Score=33.40 Aligned_cols=55 Identities=15% Similarity=0.297 Sum_probs=39.4
Q ss_pred ceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCC
Q 024018 196 NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259 (274)
Q Consensus 196 ~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g 259 (274)
.+|--..|..+-..||.++|+. ||.|. |..+ ++ .-|||...+.+.|..|+..+..
T Consensus 10 HVFhltFPkeWK~~DI~qlFsp-fG~I~-VsWi--~d-----TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLTFPKEWKTSDIYQLFSP-FGQIY-VSWI--ND-----TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE--TT--HHHHHHHCCC-CCCEE-EEEE--CT-----TEEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEeCchHhhhhhHHHHhcc-CCcEE-EEEE--cC-----CcEEEEeecHHHHHHHHHHhcc
Confidence 3444459999999999999999 99883 3333 33 2599999999999999998764
No 205
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.20 E-value=0.016 Score=49.65 Aligned_cols=76 Identities=11% Similarity=0.121 Sum_probs=57.0
Q ss_pred cceEEecCCccccHHHHH---HHHhhcCCceEEEEEEEcCC--CCC-CccEEEEEEcCHHHHHHHHHHhCCceeCCeEEE
Q 024018 195 FNLFIANLSFEARAKDLR---EFFISEGWDVVSAEVIFHDN--PRR-SAGYGFVSFKSKKVAETAISAFQGKVIMCLVIA 268 (274)
Q Consensus 195 ~~l~V~nlp~~~~~~~l~---~~f~~~~G~v~~~~i~~~~~--~g~-~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~ 268 (274)
+-+||-+|+....++.+- +.|.. ||.|..+.+..+.. .+. ...-++|.|+..++|.+||...+|...+|+.++
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgq-ygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQ-YGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccc-cccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 457788888776655443 56776 78999998877652 111 122389999999999999999999999998877
Q ss_pred EEE
Q 024018 269 LSY 271 (274)
Q Consensus 269 v~~ 271 (274)
.+|
T Consensus 157 a~~ 159 (327)
T KOG2068|consen 157 ASL 159 (327)
T ss_pred Hhh
Confidence 665
No 206
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=94.17 E-value=0.042 Score=49.07 Aligned_cols=68 Identities=22% Similarity=0.252 Sum_probs=52.9
Q ss_pred eEEecCCccc-cHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 024018 197 LFIANLSFEA-RAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSYL 272 (274)
Q Consensus 197 l~V~nlp~~~-~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a 272 (274)
|-+.-.|+.. +-.+|...|.. ||.|..|.+-.. --.|.|.|.+..+|.+|-. .++-.|+||-|+|.|-
T Consensus 375 l~lek~~~glnt~a~ln~hfA~-fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~wh 443 (526)
T KOG2135|consen 375 LALEKSPFGLNTIADLNPHFAQ-FGEIENIQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWH 443 (526)
T ss_pred hhhhccCCCCchHhhhhhhhhh-cCccccccccCc------hhhheeeeeccccccchhc-cccceecCceeEEEEe
Confidence 3334444443 45789999998 999999877322 3459999999999988887 4899999999999884
No 207
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.46 E-value=0.2 Score=42.38 Aligned_cols=64 Identities=16% Similarity=0.137 Sum_probs=48.6
Q ss_pred ccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeE
Q 024018 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLV 266 (274)
Q Consensus 194 ~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~ 266 (274)
...|-|-++|..-. .-|...|++ ||.|.+.... ..-.+-+|+|.++-+|++||.+ +|+.|+|..
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~-cG~Vvkhv~~------~ngNwMhirYssr~~A~KALsk-ng~ii~g~v 260 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSR-CGEVVKHVTP------SNGNWMHIRYSSRTHAQKALSK-NGTIIDGDV 260 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHh-hCeeeeeecC------CCCceEEEEecchhHHHHhhhh-cCeeeccce
Confidence 34566777765543 467788898 9999876442 2345899999999999999996 999998754
No 208
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.27 E-value=0.27 Score=43.89 Aligned_cols=68 Identities=19% Similarity=0.205 Sum_probs=59.9
Q ss_pred ccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeC
Q 024018 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263 (274)
Q Consensus 194 ~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~ 263 (274)
+..|+|-.+|..++-.||-.|+..+.-.|.++++++|... .+-.++|+|.+.++|..-.+.+||..+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p--nrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP--NRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC--ceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 6789999999999999999999986678999999997542 3557999999999999999999999875
No 209
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=92.66 E-value=0.2 Score=45.86 Aligned_cols=71 Identities=21% Similarity=0.363 Sum_probs=54.9
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHhc--cCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCC--CeecCcEEEE
Q 024018 98 YSKTRLVAQNVPWTSTHEDIRALFEQ--HGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLES--YEFEGRTLKV 173 (274)
Q Consensus 98 ~~~~~l~v~nLp~~~t~~~L~~~f~~--~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~--~~~~g~~i~v 173 (274)
...+.|.++-||..+.+++++.+|+. |-++.+|.+-.+ .-=||+|++..||..|.++|.. +.|.|++|..
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N------~nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN------DNWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec------CceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 35566788999999999999999975 667888887653 2368999999999999987754 5566666544
Q ss_pred e
Q 024018 174 N 174 (274)
Q Consensus 174 ~ 174 (274)
+
T Consensus 247 R 247 (684)
T KOG2591|consen 247 R 247 (684)
T ss_pred h
Confidence 3
No 210
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=92.49 E-value=0.88 Score=30.39 Aligned_cols=60 Identities=20% Similarity=0.285 Sum_probs=34.7
Q ss_pred ccccHHHHHHHHhhcCC----ceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 024018 204 FEARAKDLREFFISEGW----DVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSYL 272 (274)
Q Consensus 204 ~~~~~~~l~~~f~~~~G----~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a 272 (274)
..++..+|..++....| .|-.+.|. ..|+||+-... .|..++++|++..+.|++|+|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~--------~~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIF--------DNFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE---------SS-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEe--------eeEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 45677788888776222 34555553 45899988764 788899999999999999999875
No 211
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=92.26 E-value=0.76 Score=30.70 Aligned_cols=59 Identities=20% Similarity=0.269 Sum_probs=36.0
Q ss_pred CCCCHHHHHHHHhccC-----ceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeec
Q 024018 110 WTSTHEDIRALFEQHG-----TVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (274)
Q Consensus 110 ~~~t~~~L~~~f~~~G-----~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 176 (274)
..++..+|..++...+ .|-.|.+. ..|+||+-... .|..+++.|++..+.|++++|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~-------~~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIF-------DNFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE--------SS-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEe-------eeEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 3578888988887653 26678886 45899988654 778888889999999999999865
No 212
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=92.06 E-value=0.23 Score=46.42 Aligned_cols=110 Identities=11% Similarity=0.059 Sum_probs=79.4
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeeccc
Q 024018 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178 (274)
Q Consensus 99 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 178 (274)
..-++||||+...+..+-++.++..||-|-.+... -|||+.|........|+..++-..++|..+.++....
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~--------~fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d~q 110 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRD--------KFGFCEFLKHIGDLRASRLLTELNIDDQKLIENVDEQ 110 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhh--------hhcccchhhHHHHHHHHHHhcccCCCcchhhccchhh
Confidence 34569999999999999999999999988877553 2999999999999999999998999999888776532
Q ss_pred ccCCCCCC-------CCCCCCC--ccceEEecCCccccHHHHHHHHh
Q 024018 179 KKKNPFPP-------VQPKPFA--TFNLFIANLSFEARAKDLREFFI 216 (274)
Q Consensus 179 ~~~~~~~~-------~~~~~~~--~~~l~V~nlp~~~~~~~l~~~f~ 216 (274)
.-...... ...-.+. .+-.++.++|....+...+..+.
T Consensus 111 ~~~n~~k~~~~~~~~~~~f~p~~srr~e~i~~k~~~l~~~~~~~~~~ 157 (668)
T KOG2253|consen 111 TIENADKEKSIANKESHKFVPSSSRRQESIQNKPLSLDEQIHKKSLQ 157 (668)
T ss_pred hhcCccccccchhhhhcccCCchhHHHHHhhccccchhHHHHHHHHh
Confidence 21111100 0000011 34577778887777776666665
No 213
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=91.29 E-value=0.5 Score=36.21 Aligned_cols=117 Identities=9% Similarity=-0.008 Sum_probs=75.7
Q ss_pred EEEeCCC--CCCCHHHHHHHHhc-cCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeecccc
Q 024018 103 LVAQNVP--WTSTHEDIRALFEQ-HGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179 (274)
Q Consensus 103 l~v~nLp--~~~t~~~L~~~f~~-~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 179 (274)
..||.+. ...+-..|...+.. ++....+.+..- ..++..+.|.+.+++.++++ .....++|..+.+....+.
T Consensus 18 ~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l----~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~ 92 (153)
T PF14111_consen 18 CLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDL----GDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPD 92 (153)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEe----CCCeEEEEEEeccceeEEEe-cccccccccchhhhhhccc
Confidence 4455552 23566677776654 343333433321 26789999999999999988 3567778888888888754
Q ss_pred cCCCCCCCCCCCCCccceEEecCCcc-ccHHHHHHHHhhcCCceEEEEEE
Q 024018 180 KKNPFPPVQPKPFATFNLFIANLSFE-ARAKDLREFFISEGWDVVSAEVI 228 (274)
Q Consensus 180 ~~~~~~~~~~~~~~~~~l~V~nlp~~-~~~~~l~~~f~~~~G~v~~~~i~ 228 (274)
..... ........-+.|.|||.. .+++-++.+.+. .|.+.++...
T Consensus 93 ~~~~~---~~~~~~~vWVri~glP~~~~~~~~~~~i~~~-iG~~i~vD~~ 138 (153)
T PF14111_consen 93 FNPSE---VKFEHIPVWVRIYGLPLHLWSEEILKAIGSK-IGEPIEVDEN 138 (153)
T ss_pred ccccc---cceeccchhhhhccCCHHHhhhHHHHHHHHh-cCCeEEEEcC
Confidence 33211 001111344777899976 577778888887 8999887654
No 214
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=91.28 E-value=1.1 Score=29.22 Aligned_cols=56 Identities=14% Similarity=0.189 Sum_probs=42.7
Q ss_pred ccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEE
Q 024018 204 FEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIAL 269 (274)
Q Consensus 204 ~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v 269 (274)
..++-++++..+.. |+ -.+ |..|. .| -||.|.+..+|+++....+|+.+.+.+|.+
T Consensus 10 ~~~~v~d~K~~Lr~-y~-~~~--I~~d~-----tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 10 HGVTVEDFKKRLRK-YR-WDR--IRDDR-----TG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CCccHHHHHHHHhc-CC-cce--EEecC-----CE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 35677899999998 64 223 33332 23 689999999999999999999998887764
No 215
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.50 E-value=3.3 Score=38.41 Aligned_cols=42 Identities=21% Similarity=0.435 Sum_probs=33.3
Q ss_pred cCCCCeEEEeCCCCC-CCHHHHHHHHhcc----CceEEEEEeecCCC
Q 024018 97 EYSKTRLVAQNVPWT-STHEDIRALFEQH----GTVLDIELSMHSKN 138 (274)
Q Consensus 97 ~~~~~~l~v~nLp~~-~t~~~L~~~f~~~----G~v~~v~~~~~~~~ 138 (274)
...+++|-|-|+.|+ +...+|.-+|..| |.|.+|.|+...-|
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFG 217 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFG 217 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhh
Confidence 345788999999996 7899999999876 56889988765434
No 216
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=86.56 E-value=3.4 Score=28.41 Aligned_cols=58 Identities=12% Similarity=0.040 Sum_probs=45.7
Q ss_pred eEEecCCccccHHHHHHHHhhcCC-ceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHh
Q 024018 197 LFIANLSFEARAKDLREFFISEGW-DVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAF 257 (274)
Q Consensus 197 l~V~nlp~~~~~~~l~~~f~~~~G-~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l 257 (274)
-|+-.++...+..+|++.++.+|| .|.+|+....+. ...-|+|.+...++|.+....+
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~---~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK---GEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CcEEEEEEeCCCCcHHHHHHhh
Confidence 445557889999999999999887 788888776652 3456999999999988876654
No 217
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=86.15 E-value=10 Score=32.13 Aligned_cols=56 Identities=18% Similarity=0.316 Sum_probs=40.7
Q ss_pred CeEEEeCCCCCCCHHHHHHHHhccCc-eEEEEEeecCCCCceeEEEEEECCH-------HHHHHHHHHc
Q 024018 101 TRLVAQNVPWTSTHEDIRALFEQHGT-VLDIELSMHSKNRNRGLAFVTMGSP-------DEATAALNNL 161 (274)
Q Consensus 101 ~~l~v~nLp~~~t~~~L~~~f~~~G~-v~~v~~~~~~~~~~~g~afv~f~~~-------~~a~~a~~~l 161 (274)
.-||++||+.++.-.+|+..+.+.|- ..++.+.- +.|-||+.|.+. ++.++++..+
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg-----~~~k~flh~~~~~~~~~~~~~~~~~~~s~ 394 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKG-----HFGKCFLHFGNRKGVPSTQDDMDKVLKSL 394 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEeeec-----CCcceeEecCCccCCCCCchHHHHHhccC
Confidence 44999999999999999999988764 34444432 377899999764 4555555544
No 218
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=85.15 E-value=4.6 Score=27.23 Aligned_cols=58 Identities=12% Similarity=0.055 Sum_probs=45.4
Q ss_pred eEEecCCccccHHHHHHHHhhcCC-ceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHh
Q 024018 197 LFIANLSFEARAKDLREFFISEGW-DVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAF 257 (274)
Q Consensus 197 l~V~nlp~~~~~~~l~~~f~~~~G-~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l 257 (274)
-|+-.++...+..+|++.++.+|| .|.+++...-+. ...-|+|.+...++|.+.-..+
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~---~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR---GEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CceEEEEEECCCCcHHHHHHhh
Confidence 455567889999999999999887 788887776652 3456999999988888776654
No 219
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=84.55 E-value=0.87 Score=42.71 Aligned_cols=69 Identities=14% Similarity=0.033 Sum_probs=58.3
Q ss_pred CCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEE
Q 024018 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIAL 269 (274)
Q Consensus 191 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v 269 (274)
.++..++||+|+-..+..+-++.+... +|.|..+... .|||.+|.......+|+..|+-..++|..+.+
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~-~g~v~s~kr~---------~fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~ 105 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAK-SGFVPSWKRD---------KFGFCEFLKHIGDLRASRLLTELNIDDQKLIE 105 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhh-CCcchhhhhh---------hhcccchhhHHHHHHHHHHhcccCCCcchhhc
Confidence 344678999999999999999999997 9999777543 28999999999999999999988888776543
No 220
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=84.17 E-value=1.2 Score=34.96 Aligned_cols=83 Identities=16% Similarity=0.169 Sum_probs=56.0
Q ss_pred CCcccccCchhhhccCCCCeEEEeCCCCCCCHHHHHHHHhcc-CceEEEEEeecCCC--CceeEEEEEECCHHHHHHHHH
Q 024018 83 SSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQH-GTVLDIELSMHSKN--RNRGLAFVTMGSPDEATAALN 159 (274)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~L~~~f~~~-G~v~~v~~~~~~~~--~~~g~afv~f~~~~~a~~a~~ 159 (274)
++.+.+....+.......+++|.. .|+++|.++..-- |.+..+.+.+...+ ..+|-.||.|.+.+.|.++++
T Consensus 94 ~skplpEvt~e~~~~~~~r~v~~K-----~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~ 168 (205)
T KOG4213|consen 94 PSKPLPEVTDEYKEGIKERTVYKK-----ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDD 168 (205)
T ss_pred cCCCCccccHHHHHHHHHhhhhcc-----CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhh
Confidence 333444555556666677788876 5566665554322 68999988777665 678999999999999999887
Q ss_pred HcCCCeecCcEE
Q 024018 160 NLESYEFEGRTL 171 (274)
Q Consensus 160 ~l~~~~~~g~~i 171 (274)
. ++..+.-..|
T Consensus 169 ~-~e~~~~e~el 179 (205)
T KOG4213|consen 169 T-HEEKGAETEL 179 (205)
T ss_pred h-hhhhccchHH
Confidence 4 4444433333
No 221
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=73.82 E-value=16 Score=30.96 Aligned_cols=48 Identities=21% Similarity=0.287 Sum_probs=35.4
Q ss_pred ccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCH
Q 024018 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSK 247 (274)
Q Consensus 194 ~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~ 247 (274)
..-++|+||+.++.-.||+..+.+ -|.+ -..+.+. .+.|-||+.|-+.
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~-~~~~-pm~iswk----g~~~k~flh~~~~ 377 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRK-RECT-PMSISWK----GHFGKCFLHFGNR 377 (396)
T ss_pred ccceeeccCccccchHHHHHHHHh-cCCC-ceeEeee----cCCcceeEecCCc
Confidence 356999999999999999999987 4433 2233333 2467799999763
No 222
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=71.53 E-value=19 Score=24.69 Aligned_cols=56 Identities=18% Similarity=0.210 Sum_probs=42.9
Q ss_pred eEEEeCCCCCCCHHHHHHHHhc-cCc-eEEEEEeecCCCCceeEEEEEECCHHHHHHHHH
Q 024018 102 RLVAQNVPWTSTHEDIRALFEQ-HGT-VLDIELSMHSKNRNRGLAFVTMGSPDEATAALN 159 (274)
Q Consensus 102 ~l~v~nLp~~~t~~~L~~~f~~-~G~-v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~ 159 (274)
.-|+--++...+..+|++.++. ||. |..|.....+.| ..-|||.+...++|.....
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~--~KKA~V~L~~g~~A~~va~ 79 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKG--EKKAYVKLAEEYDAEEIAS 79 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCC--cEEEEEEeCCCCcHHHHHH
Confidence 3566668899999999999987 776 788877665433 3459999998888877644
No 223
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=70.85 E-value=12 Score=23.93 Aligned_cols=20 Identities=25% Similarity=0.453 Sum_probs=16.5
Q ss_pred HHHHHHHhccCceEEEEEee
Q 024018 115 EDIRALFEQHGTVLDIELSM 134 (274)
Q Consensus 115 ~~L~~~f~~~G~v~~v~~~~ 134 (274)
.+||++|+..|.|.-+.+-.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~ 28 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNP 28 (62)
T ss_pred HHHHHHHHhcCcEEEEEEcc
Confidence 68999999999988766643
No 224
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=70.75 E-value=7.7 Score=25.48 Aligned_cols=60 Identities=7% Similarity=-0.012 Sum_probs=43.0
Q ss_pred HHHHHHHhhcCC-ceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 024018 209 KDLREFFISEGW-DVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSYL 272 (274)
Q Consensus 209 ~~l~~~f~~~~G-~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a 272 (274)
++|++.|.+ .| .+..+..+...+++.+...-+|+.....+-.. .|+=+.++|++|.|+-.
T Consensus 2 ~~I~~~L~~-~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~ 62 (69)
T smart00596 2 SQIEEALKD-IGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERP 62 (69)
T ss_pred HHHHHHHHH-cCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecC
Confidence 467888888 55 88888888888877888888888876543332 34445677888888643
No 225
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=70.36 E-value=20 Score=27.35 Aligned_cols=58 Identities=9% Similarity=0.068 Sum_probs=43.4
Q ss_pred ceEEecCCccccHHHHHHHHhhcCC-ceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHH
Q 024018 196 NLFIANLSFEARAKDLREFFISEGW-DVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256 (274)
Q Consensus 196 ~l~V~nlp~~~~~~~l~~~f~~~~G-~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 256 (274)
+-|+-.++...+..+|++.++.+|+ .|..|.....+. ...-|||.+....+|......
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~---g~KKA~V~L~~~~~aidva~k 141 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPD---GLKKAYIRLSPDVDALDVANK 141 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCC---CceEEEEEECCCCcHHHHHHh
Confidence 4555667889999999999999776 678887776653 344699999887776655544
No 226
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=68.87 E-value=26 Score=23.61 Aligned_cols=56 Identities=16% Similarity=0.190 Sum_probs=41.7
Q ss_pred eEEEeCCCCCCCHHHHHHHHhc-cCc-eEEEEEeecCCCCceeEEEEEECCHHHHHHHHH
Q 024018 102 RLVAQNVPWTSTHEDIRALFEQ-HGT-VLDIELSMHSKNRNRGLAFVTMGSPDEATAALN 159 (274)
Q Consensus 102 ~l~v~nLp~~~t~~~L~~~f~~-~G~-v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~ 159 (274)
.-|+-.++.+.+..+|++.++. ||. |..|.....+.+ ..-|||.+..-+.|...-.
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~--~KKA~VtL~~g~~a~~va~ 72 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRG--EKKAYVKLAEEYAAEEIAS 72 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCC--ceEEEEEECCCCcHHHHHH
Confidence 3667778999999999999987 675 777776655432 3359999988877766543
No 227
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=67.13 E-value=12 Score=24.62 Aligned_cols=62 Identities=13% Similarity=0.199 Sum_probs=43.5
Q ss_pred HHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEee
Q 024018 209 KDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSYLY 273 (274)
Q Consensus 209 ~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a~ 273 (274)
++|++.|....-.|..+.-+....++.+-..-||+.+...+.. +.++=..+.+..|+|+..|
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k---~i~~Ik~l~~~~V~vE~~~ 63 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNK---EIYKIKTLCGQRVKVERPR 63 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcccc---ceeehHhhCCeEEEEecCC
Confidence 5677888873337888888877766777888888888765522 3344556778888887654
No 228
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=65.54 E-value=7.4 Score=28.53 Aligned_cols=38 Identities=11% Similarity=0.232 Sum_probs=22.9
Q ss_pred CCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCH
Q 024018 112 STHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151 (274)
Q Consensus 112 ~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~ 151 (274)
.+.++|++.|..|.+++ ++...++. -+.|+++|+|..-
T Consensus 29 ~~~~~l~~~l~~f~p~k-v~~l~~~~-gh~g~aiv~F~~~ 66 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLK-VKPLYGKQ-GHTGFAIVEFNKD 66 (116)
T ss_dssp --SHHHHHHHHH---SE-EEEEEETT-EEEEEEEEE--SS
T ss_pred cCHHHHHHHHHhcCCce-eEECcCCC-CCcEEEEEEECCC
Confidence 35589999999998875 44445544 3589999999754
No 229
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=63.89 E-value=13 Score=29.45 Aligned_cols=77 Identities=21% Similarity=0.264 Sum_probs=52.6
Q ss_pred CeEEEeCCCCCC--C---HHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCc-EEEEe
Q 024018 101 TRLVAQNVPWTS--T---HEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGR-TLKVN 174 (274)
Q Consensus 101 ~~l~v~nLp~~~--t---~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~-~i~v~ 174 (274)
.++.+.+++..+ + .....++|.+|.+..-.++++ +.+..-|.|.+++.|..|...+++..|.|. .++.-
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr-----sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~y 85 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR-----SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLY 85 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH-----hhceeEEeccChhHHHHHHHHhhhcccCCCceEEEE
Confidence 446666776654 2 223334555565555444543 366677899999999999998999999888 88888
Q ss_pred ecccccCC
Q 024018 175 YAKIKKKN 182 (274)
Q Consensus 175 ~~~~~~~~ 182 (274)
++.+....
T Consensus 86 faQ~~~~~ 93 (193)
T KOG4019|consen 86 FAQPGHPE 93 (193)
T ss_pred EccCCCcc
Confidence 87765443
No 230
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.73 E-value=23 Score=31.63 Aligned_cols=55 Identities=24% Similarity=0.187 Sum_probs=45.6
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHhccCc-eEEEEEeecCCCCceeEEEEEECCHHHHHHHHHH
Q 024018 100 KTRLVAQNVPWTSTHEDIRALFEQHGT-VLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160 (274)
Q Consensus 100 ~~~l~v~nLp~~~t~~~L~~~f~~~G~-v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~ 160 (274)
...|-|.++|.....+||...|..|+. --+|.++. ...||..|.+...|..|+..
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvD------dthalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVD------DTHALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEee------cceeEEeecchHHHHHHhhc
Confidence 467889999999988999999999986 44566654 45799999999999999983
No 231
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.58 E-value=24 Score=31.54 Aligned_cols=56 Identities=18% Similarity=0.101 Sum_probs=44.1
Q ss_pred ccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHH
Q 024018 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256 (274)
Q Consensus 194 ~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 256 (274)
.+.|-|.++|...-.+||...|+.|-+.=.+|.++-| ..||-.|.+...|..|+..
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd-------thalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD-------THALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec-------ceeEEeecchHHHHHHhhc
Confidence 5789999999999989999999984444444544433 3699999999999999984
No 232
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=60.52 E-value=21 Score=23.41 Aligned_cols=63 Identities=16% Similarity=0.288 Sum_probs=44.9
Q ss_pred HHHHHHHhccCc-eEEEEEeecC-CCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeeccccc
Q 024018 115 EDIRALFEQHGT-VLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180 (274)
Q Consensus 115 ~~L~~~f~~~G~-v~~v~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~ 180 (274)
++|.+.|...|- |..+.-+..+ ++.+-...||+.....+...+ ++=..+.|+.|.|+..+.+.
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i---~~Ik~l~~~~V~vE~~~k~~ 66 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI---YKIKTLCGQRVKVERPRKRR 66 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce---eehHhhCCeEEEEecCCCCC
Confidence 577888888775 7777666666 566777888988877663333 45567888888888876543
No 233
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=58.59 E-value=14 Score=32.67 Aligned_cols=68 Identities=16% Similarity=0.268 Sum_probs=50.1
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCc-eEEEEEeecCC---CCceeEEEEEECCHHHHHHHHHHcCCCee
Q 024018 99 SKTRLVAQNVPWTSTHEDIRALFEQHGT-VLDIELSMHSK---NRNRGLAFVTMGSPDEATAALNNLESYEF 166 (274)
Q Consensus 99 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~-v~~v~~~~~~~---~~~~g~afv~f~~~~~a~~a~~~l~~~~~ 166 (274)
....|.|.+||+..++.+|.+-...+-. +....+..... ....+.|||.|...++.....+.++|..+
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 4456889999999999999998887655 33333332221 23366799999999998888888888655
No 234
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=56.84 E-value=31 Score=29.57 Aligned_cols=79 Identities=14% Similarity=0.151 Sum_probs=58.3
Q ss_pred CccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCC-------CCCCccEEEEEEcCHHHHHHHH----HHhC--C
Q 024018 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDN-------PRRSAGYGFVSFKSKKVAETAI----SAFQ--G 259 (274)
Q Consensus 193 ~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~-------~g~~~g~afV~f~~~~~a~~A~----~~l~--g 259 (274)
.++.|...|+...++-..+..-|-+ ||.|++|.++.+.. .........+.|-+++.+..-- ..|. .
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~-~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK 92 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVK-FGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFK 92 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhc-cCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHH
Confidence 3688999999999999999999998 99999999987651 1123456889999988876542 3333 2
Q ss_pred ceeCCeEEEEEEe
Q 024018 260 KVIMCLVIALSYL 272 (274)
Q Consensus 260 ~~i~g~~i~v~~a 272 (274)
+.+....|+++|.
T Consensus 93 ~~L~S~~L~lsFV 105 (309)
T PF10567_consen 93 TKLKSESLTLSFV 105 (309)
T ss_pred HhcCCcceeEEEE
Confidence 3456677777764
No 235
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=56.69 E-value=17 Score=28.82 Aligned_cols=38 Identities=13% Similarity=0.052 Sum_probs=32.2
Q ss_pred CccEEEEEEcCHHHHHHHHHHhCCceeCCe-EEEEEEee
Q 024018 236 SAGYGFVSFKSKKVAETAISAFQGKVIMCL-VIALSYLY 273 (274)
Q Consensus 236 ~~g~afV~f~~~~~a~~A~~~l~g~~i~g~-~i~v~~a~ 273 (274)
+.+...|.|.+++.|..|..+++++.+.|. .++.-||.
T Consensus 50 sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ 88 (193)
T KOG4019|consen 50 SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQ 88 (193)
T ss_pred hhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEcc
Confidence 456788999999999999999999999987 77766653
No 236
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=56.23 E-value=23 Score=23.28 Aligned_cols=62 Identities=15% Similarity=0.186 Sum_probs=44.0
Q ss_pred HHHHHHHhccCc-eEEEEEeecCC-CCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeecccc
Q 024018 115 EDIRALFEQHGT-VLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179 (274)
Q Consensus 115 ~~L~~~f~~~G~-v~~v~~~~~~~-~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 179 (274)
++|.+-|...|- +..+.-+..++ +.+-..-+|+-....+... .|+=..++|+.+.|+....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k~ 65 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHKR 65 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCccc
Confidence 577888888885 77887777665 5566678888876654333 35556788899988876544
No 237
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=51.57 E-value=28 Score=25.37 Aligned_cols=115 Identities=14% Similarity=0.200 Sum_probs=58.6
Q ss_pred CCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCC--CeecCcEEEEeecccccCCCCC
Q 024018 108 VPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLES--YEFEGRTLKVNYAKIKKKNPFP 185 (274)
Q Consensus 108 Lp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~--~~~~g~~i~v~~~~~~~~~~~~ 185 (274)
||+.+ +.|.++|+.-|+|.+|..+.. |.+ ++ |+-.++| ..++|. |++.-.........
T Consensus 11 lPPYT--nKLSDYfeSPGKI~svItvtq------------ypd-nd---al~~~~G~lE~vDg~-i~IGs~q~~~sV~i- 70 (145)
T TIGR02542 11 LPPYT--NKLSDYFESPGKIQSVITVTQ------------YPD-ND---ALLYVHGTLEQVDGN-IRIGSGQTPASVRI- 70 (145)
T ss_pred cCCcc--chhhHHhcCCCceEEEEEEec------------cCC-ch---hhheeeeehhhccCc-EEEccCCCcccEEE-
Confidence 77777 468899999999998866532 111 11 2222444 223443 44443321111000
Q ss_pred CCCCCCCCccceEEecCCccccHHHHHHHHhh--cCCceEEEEEEEcCCCCCCccEEEEEEcCH
Q 024018 186 PVQPKPFATFNLFIANLSFEARAKDLREFFIS--EGWDVVSAEVIFHDNPRRSAGYGFVSFKSK 247 (274)
Q Consensus 186 ~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~--~~G~v~~~~i~~~~~~g~~~g~afV~f~~~ 247 (274)
...+.++. |.--|+.++-.+++++|.+ .|-.|.+-.+.+|--...+...||.-|...
T Consensus 71 ---~gTPsgnn--v~F~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~ 129 (145)
T TIGR02542 71 ---QGTPSGNN--VIFPPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNAT 129 (145)
T ss_pred ---ecCCCCCc--eecCceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccc
Confidence 00011121 2234789999999999986 122233333334422223455788877654
No 238
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=50.85 E-value=21 Score=30.15 Aligned_cols=39 Identities=13% Similarity=0.399 Sum_probs=31.0
Q ss_pred ccCCCCeEEEeCCCCC------------CCHHHHHHHHhccCceEEEEEee
Q 024018 96 EEYSKTRLVAQNVPWT------------STHEDIRALFEQHGTVLDIELSM 134 (274)
Q Consensus 96 ~~~~~~~l~v~nLp~~------------~t~~~L~~~f~~~G~v~~v~~~~ 134 (274)
......+||+.+||-. -+++-|+..|+.||.|..|.|+.
T Consensus 145 pgerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 145 PGERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 4455678999999853 36788999999999999888764
No 239
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=48.99 E-value=88 Score=21.67 Aligned_cols=49 Identities=18% Similarity=0.072 Sum_probs=37.7
Q ss_pred cHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCC
Q 024018 207 RAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259 (274)
Q Consensus 207 ~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g 259 (274)
-.+.+++.++...|+++++.+... ...-...+++.+.+.|.++.-.+..
T Consensus 21 R~~a~~~~~e~~Gg~l~~~y~t~G----~yD~v~i~eaPD~~~a~~~~l~i~~ 69 (91)
T PF08734_consen 21 RAEAVRALIEALGGKLKSFYWTLG----EYDFVVIVEAPDDETAAAASLAIRS 69 (91)
T ss_pred HHHHHHHHHHHcCCEEEEEEEecC----CCCEEEEEEcCCHHHHHHHHHHHHc
Confidence 346788899997889999888754 4456788899999988888766543
No 240
>CHL00030 rpl23 ribosomal protein L23
Probab=47.68 E-value=72 Score=22.35 Aligned_cols=36 Identities=6% Similarity=0.014 Sum_probs=28.2
Q ss_pred ceEEecCCccccHHHHHHHHhhcCC-ceEEEEEEEcC
Q 024018 196 NLFIANLSFEARAKDLREFFISEGW-DVVSAEVIFHD 231 (274)
Q Consensus 196 ~l~V~nlp~~~~~~~l~~~f~~~~G-~v~~~~i~~~~ 231 (274)
.-|+-.++..++..+|++.++.+|| .|..|....-+
T Consensus 20 n~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~~~~ 56 (93)
T CHL00030 20 NQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHRLP 56 (93)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEcC
Confidence 3556667889999999999999887 67777776553
No 241
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=47.58 E-value=44 Score=28.32 Aligned_cols=68 Identities=18% Similarity=0.298 Sum_probs=43.8
Q ss_pred ccceEEecCCccc------------cHHHHHHHHhhcCCceEEEEEEEc-----CCCCCC-----ccEE---------EE
Q 024018 194 TFNLFIANLSFEA------------RAKDLREFFISEGWDVVSAEVIFH-----DNPRRS-----AGYG---------FV 242 (274)
Q Consensus 194 ~~~l~V~nlp~~~------------~~~~l~~~f~~~~G~v~~~~i~~~-----~~~g~~-----~g~a---------fV 242 (274)
..+|++.+||-.+ +++-|+..|+. ||.|..|.|+.- ..+|+. .||+ ||
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~ea-fg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayv 227 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEA-FGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYV 227 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHH-hccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHH
Confidence 3578888887433 67889999998 999988877532 123332 2332 34
Q ss_pred EEcCHHHHHHHHHHhCCcee
Q 024018 243 SFKSKKVAETAISAFQGKVI 262 (274)
Q Consensus 243 ~f~~~~~a~~A~~~l~g~~i 262 (274)
.|-...--..|+.+|.|..+
T Consensus 228 qfmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 228 QFMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHHhHHHHHHHHhcchH
Confidence 44445555667777877654
No 242
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=47.20 E-value=2.9 Score=38.56 Aligned_cols=69 Identities=12% Similarity=0.086 Sum_probs=51.6
Q ss_pred ccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeC
Q 024018 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263 (274)
Q Consensus 194 ~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~ 263 (274)
.+.++++|++..++-.+|..+++. +..+..+.+..+....+-..+++|.|+..-....|+.+|||..+.
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~-i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKG-IPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhcc-CchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 478999999999999999999998 555555544433222334567899999877777788888876554
No 243
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=46.08 E-value=18 Score=29.83 Aligned_cols=35 Identities=31% Similarity=0.437 Sum_probs=29.3
Q ss_pred ccCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEE
Q 024018 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDI 130 (274)
Q Consensus 96 ~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v 130 (274)
......++|+-|+|..+|++.|.++.+.+|-+..+
T Consensus 36 ~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 36 NSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred ccccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 34567789999999999999999999999854433
No 244
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=45.80 E-value=13 Score=25.86 Aligned_cols=27 Identities=22% Similarity=0.352 Sum_probs=22.6
Q ss_pred ccCCCCeEEEeCCCCCCCHHHHHHHHh
Q 024018 96 EEYSKTRLVAQNVPWTSTHEDIRALFE 122 (274)
Q Consensus 96 ~~~~~~~l~v~nLp~~~t~~~L~~~f~ 122 (274)
.....++|.|.|||...++++|++.++
T Consensus 48 ~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 48 SGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred EcccCCEEEEeCCCCCCChhhheeeEE
Confidence 455788999999999999999987643
No 245
>PRK11901 hypothetical protein; Reviewed
Probab=45.27 E-value=57 Score=28.45 Aligned_cols=58 Identities=17% Similarity=0.254 Sum_probs=37.6
Q ss_pred cceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEE--EEcCHHHHHHHHHHhC
Q 024018 195 FNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFV--SFKSKKVAETAISAFQ 258 (274)
Q Consensus 195 ~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV--~f~~~~~a~~A~~~l~ 258 (274)
.+|-|.. ...++.|..|... ++ +..+.+......|+ .+|..| .|.+.++|..|+..|-
T Consensus 246 YTLQL~A---as~~~~L~~f~~~-~~-L~~~~VYqT~RnGk-pWYVVvyG~Y~Sr~eAk~Ai~sLP 305 (327)
T PRK11901 246 YTLQLSS---ASRSDTLNAYAKK-QN-LSHYHVYETKRDGK-PWYVLVSGNYASSAEAKRAIATLP 305 (327)
T ss_pred eEEEeec---CCCHHHHHHHHHH-cC-cCceEEEEEEECCc-eEEEEEecCcCCHHHHHHHHHhCC
Confidence 4444444 3457788888887 54 34444544333233 456665 7999999999999874
No 246
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=45.12 E-value=86 Score=23.97 Aligned_cols=53 Identities=11% Similarity=0.158 Sum_probs=38.8
Q ss_pred eEEEeCCCCCCCHHHHHHHHhc-cCc-eEEEEEeecCCCCceeEEEEEECCHHHHHH
Q 024018 102 RLVAQNVPWTSTHEDIRALFEQ-HGT-VLDIELSMHSKNRNRGLAFVTMGSPDEATA 156 (274)
Q Consensus 102 ~l~v~nLp~~~t~~~L~~~f~~-~G~-v~~v~~~~~~~~~~~g~afv~f~~~~~a~~ 156 (274)
.-|+--++...+..+|++.++. ||. |..|.....+.| .--|||.+....+|..
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g--~KKA~V~L~~~~~aid 137 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDG--LKKAYIRLSPDVDALD 137 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCC--ceEEEEEECCCCcHHH
Confidence 3566668899999999999986 776 777776655444 2348999977666543
No 247
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=44.95 E-value=36 Score=29.56 Aligned_cols=56 Identities=30% Similarity=0.355 Sum_probs=34.5
Q ss_pred EEEEECCHHHHHHHHHHcCCCeecCcEEEEeecccccCCCCCCCCCCCCCccceEEecCCccccHHHHHHHHh
Q 024018 144 AFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFI 216 (274)
Q Consensus 144 afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~ 216 (274)
|||+|++..+|..|++.+.... ++.+++..|....+ +.=.||.....+..++..+.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~D---------------I~W~NL~~~~~~r~~R~~~~ 56 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPDD---------------IIWENLSISSKQRFLRRIIV 56 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCccc---------------ccccccCCChHHHHHHHHHH
Confidence 7999999999999998544332 34445555543322 44456655555555554444
No 248
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=43.81 E-value=63 Score=23.68 Aligned_cols=47 Identities=19% Similarity=0.298 Sum_probs=29.9
Q ss_pred ccccHHHHHHHHhhcCCceEEEEEEE----cCCCCCCccEEEEEEcCHHHHH
Q 024018 204 FEARAKDLREFFISEGWDVVSAEVIF----HDNPRRSAGYGFVSFKSKKVAE 251 (274)
Q Consensus 204 ~~~~~~~l~~~f~~~~G~v~~~~i~~----~~~~g~~~g~afV~f~~~~~a~ 251 (274)
..++.+||++-+.++|-.-.++.++. .-.+|++.|||.| |++.+.|.
T Consensus 33 a~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~ak 83 (132)
T KOG3424|consen 33 ANVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAK 83 (132)
T ss_pred CCCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHH
Confidence 35677888888877664433333333 2456778888876 66666655
No 249
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=41.90 E-value=11 Score=33.49 Aligned_cols=62 Identities=18% Similarity=0.141 Sum_probs=51.3
Q ss_pred CCCCeEEEeCCCCCCCHH--------HHHHHHhc--cCceEEEEEeecC-CCCceeEEEEEECCHHHHHHHHH
Q 024018 98 YSKTRLVAQNVPWTSTHE--------DIRALFEQ--HGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALN 159 (274)
Q Consensus 98 ~~~~~l~v~nLp~~~t~~--------~L~~~f~~--~G~v~~v~~~~~~-~~~~~g~afv~f~~~~~a~~a~~ 159 (274)
...+.+|+.+.......+ ++..+|.. .+.+..+.+.++. +...+|..|++|...+.+.++..
T Consensus 172 ~~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 172 QMQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hHhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 345778888888766555 89999988 7788999998887 57889999999999999999863
No 250
>PRK12280 rplW 50S ribosomal protein L23; Reviewed
Probab=41.34 E-value=98 Score=24.04 Aligned_cols=35 Identities=9% Similarity=0.044 Sum_probs=28.6
Q ss_pred ceEEecCCccccHHHHHHHHhhcCC-ceEEEEEEEc
Q 024018 196 NLFIANLSFEARAKDLREFFISEGW-DVVSAEVIFH 230 (274)
Q Consensus 196 ~l~V~nlp~~~~~~~l~~~f~~~~G-~v~~~~i~~~ 230 (274)
+.|+-.++..++..+|+..++.+|| .|..|+.+..
T Consensus 23 N~ytF~V~~~anK~eIK~AVE~iF~VkV~~VNT~~~ 58 (158)
T PRK12280 23 NVYTFKVDRRANKIEIKKAVEFIFKVKVLKVNIFNV 58 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEec
Confidence 4567778999999999999999887 6778877654
No 251
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=39.81 E-value=71 Score=22.27 Aligned_cols=36 Identities=11% Similarity=0.061 Sum_probs=28.1
Q ss_pred ceEEecCCccccHHHHHHHHhhcCC-ceEEEEEEEcC
Q 024018 196 NLFIANLSFEARAKDLREFFISEGW-DVVSAEVIFHD 231 (274)
Q Consensus 196 ~l~V~nlp~~~~~~~l~~~f~~~~G-~v~~~~i~~~~ 231 (274)
..++-.++..++..+|++.++.+|| .|.+|+.+..+
T Consensus 21 n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~~ 57 (92)
T PRK05738 21 NKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNVK 57 (92)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEeC
Confidence 3555567889999999999999887 67788776543
No 252
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=38.99 E-value=45 Score=21.90 Aligned_cols=26 Identities=23% Similarity=0.211 Sum_probs=21.4
Q ss_pred cEEEEEEcCHHHHHHHHHHhCCceeC
Q 024018 238 GYGFVSFKSKKVAETAISAFQGKVIM 263 (274)
Q Consensus 238 g~afV~f~~~~~a~~A~~~l~g~~i~ 263 (274)
.+.+|.|.+..+|.+|-+.|....+.
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~ 27 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIP 27 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCc
Confidence 46899999999999999888765443
No 253
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=36.48 E-value=3.9e+02 Score=25.61 Aligned_cols=101 Identities=16% Similarity=0.166 Sum_probs=63.8
Q ss_pred CCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcC--CCee------cCcEEEEeecccccC
Q 024018 110 WTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLE--SYEF------EGRTLKVNYAKIKKK 181 (274)
Q Consensus 110 ~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~--~~~~------~g~~i~v~~~~~~~~ 181 (274)
+..-.++|.+.|..-+-+..+.+.. .||-++......-+......+. +..+ .|++|.|++..+...
T Consensus 56 P~eiA~~i~~~l~~~~~~~~veiaG------pgfINf~l~~~~~~~~~~~~l~~~~~~~G~~~~~~~~kV~iE~sSaNpt 129 (577)
T COG0018 56 PREIAEEIAEKLDTDEIIEKVEIAG------PGFINFFLSPEFLAELLLEILEKGDDRYGRSKLGKGKKVVIEYSSANPT 129 (577)
T ss_pred HHHHHHHHHHhccccCcEeEEEEcC------CCEEEEEECHHHHHHHHHHHHHhcccccCccccCCCCEEEEEEeCCCCC
Confidence 3334466666666655677777731 2454444444333333333333 2222 578999999876543
Q ss_pred CCCCCCCCCCCCccceEEecCCccccHHHHHHHHhhcCC-ceEEEEEEEc
Q 024018 182 NPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGW-DVVSAEVIFH 230 (274)
Q Consensus 182 ~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G-~v~~~~i~~~ 230 (274)
.-++||.+-..+-=|.|..+++. .| .|.....+.|
T Consensus 130 -------------kplHiGHlR~aiiGDsLaril~~-~Gy~V~r~~yvnD 165 (577)
T COG0018 130 -------------GPLHIGHLRNAIIGDSLARILEF-LGYDVTRENYVND 165 (577)
T ss_pred -------------CCcccchhhhhHHHHHHHHHHHH-cCCCeeEEeeECc
Confidence 44999999999999999999996 66 6776666544
No 254
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=35.29 E-value=90 Score=21.53 Aligned_cols=48 Identities=15% Similarity=0.163 Sum_probs=29.3
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEEC
Q 024018 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMG 149 (274)
Q Consensus 100 ~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~ 149 (274)
..-||||+++..+-|. |.+....+-.--++.|.....+ ..||+|-...
T Consensus 25 ~~GVyVg~~s~rVRe~-lW~~v~~~~~~G~a~m~~~~~n-eqG~~~~t~G 72 (86)
T PF09707_consen 25 RPGVYVGNVSARVRER-LWERVTEWIGDGSAVMVWSDNN-EQGFDFRTLG 72 (86)
T ss_pred CCCcEEcCCCHHHHHH-HHHHHHhhCCCccEEEEEccCC-CCCEEEEEeC
Confidence 3459999999888654 4444444333334444443333 7889988773
No 255
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=31.82 E-value=3.1e+02 Score=24.86 Aligned_cols=42 Identities=17% Similarity=0.358 Sum_probs=31.5
Q ss_pred cCCCCeEEEeCCCCC-CCHHHHHHHHhcc----CceEEEEEeecCCC
Q 024018 97 EYSKTRLVAQNVPWT-STHEDIRALFEQH----GTVLDIELSMHSKN 138 (274)
Q Consensus 97 ~~~~~~l~v~nLp~~-~t~~~L~~~f~~~----G~v~~v~~~~~~~~ 138 (274)
......|-|-|+.|+ +...+|...|+.| |.+..|.|+...-|
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefG 189 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFG 189 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhh
Confidence 345677889999995 7889999988875 55888888765434
No 256
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=31.66 E-value=39 Score=19.07 Aligned_cols=16 Identities=6% Similarity=0.341 Sum_probs=10.4
Q ss_pred CCCCHHHHHHHHhccC
Q 024018 110 WTSTHEDIRALFEQHG 125 (274)
Q Consensus 110 ~~~t~~~L~~~f~~~G 125 (274)
.++++++|++.|.+.+
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 3678999999998765
No 257
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=31.24 E-value=86 Score=22.18 Aligned_cols=49 Identities=12% Similarity=0.197 Sum_probs=29.0
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHh-ccCceEEEEEeecCCCCceeEEEEEECCH
Q 024018 100 KTRLVAQNVPWTSTHEDIRALFE-QHGTVLDIELSMHSKNRNRGLAFVTMGSP 151 (274)
Q Consensus 100 ~~~l~v~nLp~~~t~~~L~~~f~-~~G~v~~v~~~~~~~~~~~g~afv~f~~~ 151 (274)
..-||||+++..+-+. |.+... .++. -++.|....++ ..||+|-++.+.
T Consensus 27 ~~GVyVg~~S~rVRd~-lW~~v~~~~~~-G~avmv~~~~~-eqG~~~~t~G~~ 76 (97)
T PRK11558 27 RAGVYVGDVSRRIREM-IWQQVTQLAEE-GNVVMAWATNT-ESGFEFQTFGEN 76 (97)
T ss_pred CCCcEEcCCCHHHHHH-HHHHHHHhCCC-CcEEEEEcCCC-CCCcEEEecCCC
Confidence 3459999998877644 444444 4443 34444443333 348998877644
No 258
>PF15628 RRM_DME: RRM in Demeter
Probab=31.10 E-value=1.3e+02 Score=21.32 Aligned_cols=24 Identities=4% Similarity=0.156 Sum_probs=18.3
Q ss_pred ccceEEec----CCccccHHHHHHHHhh
Q 024018 194 TFNLFIAN----LSFEARAKDLREFFIS 217 (274)
Q Consensus 194 ~~~l~V~n----lp~~~~~~~l~~~f~~ 217 (274)
.+.+|++- +-..++.++|++.|.+
T Consensus 50 rr~vYfGtsv~SIfrGls~~eIq~cF~~ 77 (103)
T PF15628_consen 50 RRIVYFGTSVSSIFRGLSREEIQQCFWK 77 (103)
T ss_pred ceEEEecCcHHHHhcccCHHHHHHHHhc
Confidence 45677663 4467789999999997
No 259
>PTZ00071 40S ribosomal protein S24; Provisional
Probab=31.07 E-value=1.3e+02 Score=22.53 Aligned_cols=47 Identities=15% Similarity=0.290 Sum_probs=27.1
Q ss_pred cccHHHHHHHHhhcCC-ceEEEEEEEc----CCCCCCccEEEEEEcCHHHHHH
Q 024018 205 EARAKDLREFFISEGW-DVVSAEVIFH----DNPRRSAGYGFVSFKSKKVAET 252 (274)
Q Consensus 205 ~~~~~~l~~~f~~~~G-~v~~~~i~~~----~~~g~~~g~afV~f~~~~~a~~ 252 (274)
..+..+|++-+...|+ .=.+..++.. -..|.+.|||.| |++.+.|.+
T Consensus 35 TpSr~eirekLA~~~~v~d~~~Vvv~~~~T~fG~g~StG~a~I-Yds~e~~kk 86 (132)
T PTZ00071 35 TVSKKDIKEKLAKQYKVADARTIVLFGFKTKFGGGKTTGFGLI-YDNLAALKK 86 (132)
T ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 5677888888887777 3333333332 223456666655 666666543
No 260
>PF14893 PNMA: PNMA
Probab=29.86 E-value=58 Score=28.67 Aligned_cols=54 Identities=11% Similarity=0.159 Sum_probs=32.7
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHhc-cCceEEEEEeec--CCCCceeEEEEEECCH
Q 024018 98 YSKTRLVAQNVPWTSTHEDIRALFEQ-HGTVLDIELSMH--SKNRNRGLAFVTMGSP 151 (274)
Q Consensus 98 ~~~~~l~v~nLp~~~t~~~L~~~f~~-~G~v~~v~~~~~--~~~~~~g~afv~f~~~ 151 (274)
...+.|.|.+||.+|++++|.+.+.. +-+.-..++... .......-|+|+|...
T Consensus 16 ~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e~ 72 (331)
T PF14893_consen 16 DPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAED 72 (331)
T ss_pred ChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeecccc
Confidence 34577999999999999999998764 222222222211 1111244677887643
No 261
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=29.72 E-value=1.5e+02 Score=20.79 Aligned_cols=36 Identities=8% Similarity=0.018 Sum_probs=28.6
Q ss_pred ceEEecCCccccHHHHHHHHhhcCC-ceEEEEEEEcC
Q 024018 196 NLFIANLSFEARAKDLREFFISEGW-DVVSAEVIFHD 231 (274)
Q Consensus 196 ~l~V~nlp~~~~~~~l~~~f~~~~G-~v~~~~i~~~~ 231 (274)
..++-.+....+..+|++.++.+|| .|.+|+.+..+
T Consensus 22 nk~vF~V~~~AtK~~IK~AvE~lF~VkV~kVNTl~~k 58 (94)
T COG0089 22 NKYVFIVDPDATKPEIKAAVEELFGVKVEKVNTLNTK 58 (94)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEeC
Confidence 4556667889999999999999888 67788776554
No 262
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=29.43 E-value=1.9e+02 Score=27.07 Aligned_cols=62 Identities=19% Similarity=0.237 Sum_probs=42.2
Q ss_pred CeEEEeCCCCCCCHHHHHHHHh----ccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcC
Q 024018 101 TRLVAQNVPWTSTHEDIRALFE----QHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLE 162 (274)
Q Consensus 101 ~~l~v~nLp~~~t~~~L~~~f~----~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~ 162 (274)
..+.++.-..+.+.-+|..+|. .+|.|..+.+...+.-......++.|.+.++|..++..+.
T Consensus 190 ~i~~~~~~~~~~~g~dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 190 EALTLGSDALDSPGFDLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred cEEEeCCccCCCCccchHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHH
Confidence 3344443222333456777664 5788998888776655556778899999999999987653
No 263
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=28.78 E-value=65 Score=28.67 Aligned_cols=69 Identities=13% Similarity=0.117 Sum_probs=49.2
Q ss_pred ccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCC---CCccEEEEEEcCHHHHHHHHHHhCCceeC
Q 024018 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPR---RSAGYGFVSFKSKKVAETAISAFQGKVIM 263 (274)
Q Consensus 194 ~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g---~~~g~afV~f~~~~~a~~A~~~l~g~~i~ 263 (274)
...+.|..||...+++++.+...++--.|....+... +.+ .-.+.|+|.|...++...-..-.+|..+-
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a-~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKA-DESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccc-cccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 3568899999999999999888873334444433321 111 23667999999999988878888887753
No 264
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=28.51 E-value=1e+02 Score=20.92 Aligned_cols=34 Identities=12% Similarity=0.227 Sum_probs=23.9
Q ss_pred eEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCC
Q 024018 127 VLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESY 164 (274)
Q Consensus 127 v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~ 164 (274)
|.++.... .-+||-|||=.+.+++..|++.+.+.
T Consensus 34 I~Si~~~~----~lkGyIyVEA~~~~~V~~ai~gi~~i 67 (84)
T PF03439_consen 34 IYSIFAPD----SLKGYIYVEAERESDVKEAIRGIRHI 67 (84)
T ss_dssp --EEEE-T----TSTSEEEEEESSHHHHHHHHTT-TTE
T ss_pred eEEEEEeC----CCceEEEEEeCCHHHHHHHHhcccce
Confidence 55554432 25999999999999999999876653
No 265
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=28.38 E-value=83 Score=21.83 Aligned_cols=51 Identities=10% Similarity=0.046 Sum_probs=35.3
Q ss_pred eEEecCCccccHHHHHHHHhhcCC-ceEEEEEEEcCC----CCC------CccEEEEEEcCH
Q 024018 197 LFIANLSFEARAKDLREFFISEGW-DVVSAEVIFHDN----PRR------SAGYGFVSFKSK 247 (274)
Q Consensus 197 l~V~nlp~~~~~~~l~~~f~~~~G-~v~~~~i~~~~~----~g~------~~g~afV~f~~~ 247 (274)
-++-.++..++..+|++.++.+|| .|.+|+.+.-.. .|. ...-|+|.+...
T Consensus 22 ~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~kR~g~~~g~~~~~KKaiVtL~~~ 83 (91)
T PF00276_consen 22 QYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKKKRKGKFVGKTKDYKKAIVTLKEG 83 (91)
T ss_dssp EEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEEEESSSCEEEE-EEEEEEEEESTT
T ss_pred EEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCceEeCCccccCCCcEEEEEEeCCC
Confidence 455567889999999999999888 677877665430 111 113578887764
No 266
>PRK13293 F420-0--gamma-glutamyl ligase; Reviewed
Probab=28.08 E-value=3.1e+02 Score=23.03 Aligned_cols=74 Identities=15% Similarity=0.095 Sum_probs=42.1
Q ss_pred cceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCc-eeCCeEEEEE
Q 024018 195 FNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK-VIMCLVIALS 270 (274)
Q Consensus 195 ~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~-~i~g~~i~v~ 270 (274)
..+.+--.+.+.+...|++-+.+.+|. ++.|+..+..|++...+.+-..---.-..++....|. .+.|+.|++.
T Consensus 116 g~~~LLP~DPd~SA~~ir~~l~~~~g~--~v~VIItDt~gr~~R~G~t~vAIG~aGi~~l~d~rG~~D~~G~~L~vT 190 (245)
T PRK13293 116 GDLLLLPENPDESAERIREGLEELTGK--KVGVIITDTNGRPFRKGQRGVAIGVAGIPALWDWRGEKDLFGRELETT 190 (245)
T ss_pred CeEEecCCCHHHHHHHHHHHHHHHHCC--CEEEEEEcCCCcccccCCcceeeeccCchHHHhhcCCcCCCCCeeech
Confidence 334443344566777898888876775 4444444444565555555554444444555555554 3567777664
No 267
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=27.96 E-value=8.3 Score=35.76 Aligned_cols=70 Identities=16% Similarity=0.138 Sum_probs=49.4
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecC-CCCceeEEEEEECCHHHHHHHHHHcCCCeecC
Q 024018 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEG 168 (274)
Q Consensus 99 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g 168 (274)
..+.+++.|++++++-++|..+++.+--+..+.+.... ......++.|.|.---....|+..||+..+..
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 45679999999999999999999988656555543222 24557788899976555555555566655543
No 268
>PRK11901 hypothetical protein; Reviewed
Probab=26.55 E-value=4.4e+02 Score=23.13 Aligned_cols=61 Identities=15% Similarity=0.133 Sum_probs=38.7
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecC-CCCceeEEE--EEECCHHHHHHHHHHcCC
Q 024018 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAF--VTMGSPDEATAALNNLES 163 (274)
Q Consensus 98 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~-~~~~~g~af--v~f~~~~~a~~a~~~l~~ 163 (274)
....+|-|.. ...++.|..|..+.+. ..+.++... +|+. =|.. =.|.+.++|..|+..|-.
T Consensus 243 ~~~YTLQL~A---as~~~~L~~f~~~~~L-~~~~VYqT~RnGkp-WYVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 243 ASHYTLQLSS---ASRSDTLNAYAKKQNL-SHYHVYETKRDGKP-WYVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CCCeEEEeec---CCCHHHHHHHHHHcCc-CceEEEEEEECCce-EEEEEecCcCCHHHHHHHHHhCCH
Confidence 3445555544 4568889999888763 445555433 3432 1322 368999999999998753
No 269
>PF14893 PNMA: PNMA
Probab=25.80 E-value=70 Score=28.15 Aligned_cols=52 Identities=12% Similarity=0.128 Sum_probs=34.4
Q ss_pred CccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEc---CCCCCCccEEEEEEcC
Q 024018 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFH---DNPRRSAGYGFVSFKS 246 (274)
Q Consensus 193 ~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~---~~~g~~~g~afV~f~~ 246 (274)
+.+.|.|.+||.++++++|.+.+....-.+-.++|... .+ ....-|+|+|..
T Consensus 17 ~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~--~~~~aalve~~e 71 (331)
T PF14893_consen 17 PQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRRE--ENAKAALVEFAE 71 (331)
T ss_pred hhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhh--cccceeeeeccc
Confidence 35779999999999999999998863333334444322 11 124458888865
No 270
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=25.66 E-value=1.5e+02 Score=27.72 Aligned_cols=59 Identities=24% Similarity=0.379 Sum_probs=43.7
Q ss_pred EEeCCCCCCC---HHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEE
Q 024018 104 VAQNVPWTST---HEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTL 171 (274)
Q Consensus 104 ~v~nLp~~~t---~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i 171 (274)
.||||+.-.. ...+.++=++||+|-.+++- ..=.|.-.+.+.|..|+.. ++..+.+|+.
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG--------~~~~Vviss~~~akE~l~~-~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLG--------SVPVVVISSYEAAKEVLVK-QDLEFADRPD 97 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEec--------CceEEEECCHHHHHHHHHh-CCccccCCCC
Confidence 4777766433 34556666789999988772 2346778899999999985 8999988875
No 271
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.38 E-value=10 Score=34.18 Aligned_cols=74 Identities=5% Similarity=-0.195 Sum_probs=51.0
Q ss_pred cceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 024018 195 FNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALS 270 (274)
Q Consensus 195 ~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~ 270 (274)
...++..+|...+++++.-.|+. ||.|..+...+.-+.|...-.+||.-.. .+|..++.-+.-..+.|..++++
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d-~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~ 77 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHED-PSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKA 77 (572)
T ss_pred hhhhHhhcccccccchhhhhccC-CcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhh
Confidence 35678889999999999999999 9999888776665555556667776554 34555555444444444444444
No 272
>PRK10905 cell division protein DamX; Validated
Probab=24.57 E-value=1.9e+02 Score=25.30 Aligned_cols=52 Identities=17% Similarity=0.100 Sum_probs=32.2
Q ss_pred ccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEE--EEcCHHHHHHHHHHhC
Q 024018 204 FEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFV--SFKSKKVAETAISAFQ 258 (274)
Q Consensus 204 ~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV--~f~~~~~a~~A~~~l~ 258 (274)
...+++.|+++..+ .|. ....+......|. .+|..+ .|.+.++|.+|+..|-
T Consensus 254 A~Ss~~~l~~fakK-lgL-~~y~vy~TtRnGk-pWYVV~yG~YaSraeAk~AiakLP 307 (328)
T PRK10905 254 SSSNYDNLNGWAKK-ENL-KNYVVYETTRNGQ-PWYVLVSGVYASKEEAKRAVSTLP 307 (328)
T ss_pred ecCCHHHHHHHHHH-cCC-CceEEEEeccCCc-eEEEEEecCCCCHHHHHHHHHHCC
Confidence 34456788888887 543 3333333322233 244444 7899999999999874
No 273
>PF06919 Phage_T4_Gp30_7: Phage Gp30.7 protein; InterPro: IPR009690 This family consists of several phage Gp30.7 proteins of 121 residues in length. Family members seem to be exclusively from the T4-like viruses. The function of this family is unknown.
Probab=24.25 E-value=2.7e+02 Score=19.90 Aligned_cols=79 Identities=19% Similarity=0.222 Sum_probs=41.9
Q ss_pred CceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeecccccCCCCCCCCCCCCCccceEE----e
Q 024018 125 GTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI----A 200 (274)
Q Consensus 125 G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~l~V----~ 200 (274)
|.+..|..... ..|+|+.|++--. -...+.|..+++.......++....-+.-....+++.| +
T Consensus 30 Gtv~qI~~Y~~-----pNYvf~~FEnG~t--------vsv~~~gs~~kI~~~Dd~r~RDLgTHPcwnG~nRk~Lvk~~iR 96 (121)
T PF06919_consen 30 GTVAQIEQYMT-----PNYVFMRFENGIT--------VSVTYNGSIFKIGLDDDHRERDLGTHPCWNGVNRKLLVKTYIR 96 (121)
T ss_pred CcEEEEeeecC-----CCEEEEEecCCCE--------EEEEecCcEEEEEecCchhhcccCCCcCccCcchhhHHHHHHH
Confidence 55555555443 5689999973111 01344677778877666555443332222222333333 3
Q ss_pred -cCCccccHHHHHHHHh
Q 024018 201 -NLSFEARAKDLREFFI 216 (274)
Q Consensus 201 -nlp~~~~~~~l~~~f~ 216 (274)
-|...++++++..+|.
T Consensus 97 hiL~~~a~~e~~EAi~D 113 (121)
T PF06919_consen 97 HILGNKAKPEHLEAIFD 113 (121)
T ss_pred HHHhccCCHHHHHHHHH
Confidence 2455667777776665
No 274
>PF11061 DUF2862: Protein of unknown function (DUF2862); InterPro: IPR021291 This family of proteins has no known function.
Probab=24.03 E-value=1.9e+02 Score=18.77 Aligned_cols=31 Identities=13% Similarity=0.336 Sum_probs=21.7
Q ss_pred HHHHHHHhc--cCceEEEEEeecCCCCceeEEE-EEECC
Q 024018 115 EDIRALFEQ--HGTVLDIELSMHSKNRNRGLAF-VTMGS 150 (274)
Q Consensus 115 ~~L~~~f~~--~G~v~~v~~~~~~~~~~~g~af-v~f~~ 150 (274)
.+|.+.+.. .|.|...+|... +|.++ |+|.+
T Consensus 18 ~~l~~~l~~~~~g~I~~fKmtDG-----~giG~vv~~~n 51 (64)
T PF11061_consen 18 KELVDKLGKNPIGTIKGFKMTDG-----SGIGVVVEFSN 51 (64)
T ss_pred HHHHHHhccCCcEEEEEEEEecC-----CcEEEEEEecC
Confidence 566677776 888999998743 56655 56654
No 275
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=23.67 E-value=1.7e+02 Score=17.44 Aligned_cols=42 Identities=14% Similarity=0.369 Sum_probs=29.8
Q ss_pred HHHHHHHhccCc-eEEEEEeecCCCCceeEEEEEECCHHHHHHHH
Q 024018 115 EDIRALFEQHGT-VLDIELSMHSKNRNRGLAFVTMGSPDEATAAL 158 (274)
Q Consensus 115 ~~L~~~f~~~G~-v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~ 158 (274)
.++...|.+.|. |..+...... ...+...+.+.+.+.|.+++
T Consensus 13 ~~i~~~l~~~~inI~~~~~~~~~--~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 13 AEVTEILAEAGINIKAISIAETR--GEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred HHHHHHHHHcCCCEeeEEEEEcc--CCcEEEEEEECCHHHHHHHh
Confidence 566677777775 8777765542 34667778889988887775
No 276
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=22.45 E-value=3.3e+02 Score=20.23 Aligned_cols=69 Identities=14% Similarity=0.158 Sum_probs=46.0
Q ss_pred eEEEeCCCCC---CCHHHHHHHHhccCc-eEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeecc
Q 024018 102 RLVAQNVPWT---STHEDIRALFEQHGT-VLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (274)
Q Consensus 102 ~l~v~nLp~~---~t~~~L~~~f~~~G~-v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 177 (274)
.|.|+..... .+-..+.+.+..-|. +.++..- .+...|.|.+.++-.+|.+.|....=++..|.++.+.
T Consensus 37 avQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~-------~~~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl~p 109 (127)
T PRK10629 37 TLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPE-------NDSLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQDDN 109 (127)
T ss_pred eEEEecCCCCCccchHHHHHHHHHHCCCCcceEEee-------CCEEEEEECCHHHHHHHHHHHHHHcCCCCEEEEecCC
Confidence 4666655333 567888889988875 5555443 4468899999999998888776544344455554443
No 277
>PRK10905 cell division protein DamX; Validated
Probab=21.94 E-value=2.5e+02 Score=24.59 Aligned_cols=61 Identities=15% Similarity=0.109 Sum_probs=37.2
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCc-eeEEEEEECCHHHHHHHHHHcC
Q 024018 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRN-RGLAFVTMGSPDEATAALNNLE 162 (274)
Q Consensus 99 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~-~g~afv~f~~~~~a~~a~~~l~ 162 (274)
...+|-|+. ..+++.|++|..+.|.-..+.....++|+. ...-+=.|.+.++|++|+..|-
T Consensus 246 ~~YTLQL~A---~Ss~~~l~~fakKlgL~~y~vy~TtRnGkpWYVV~yG~YaSraeAk~AiakLP 307 (328)
T PRK10905 246 SHYTLQLSS---SSNYDNLNGWAKKENLKNYVVYETTRNGQPWYVLVSGVYASKEEAKRAVSTLP 307 (328)
T ss_pred CceEEEEEe---cCCHHHHHHHHHHcCCCceEEEEeccCCceEEEEEecCCCCHHHHHHHHHHCC
Confidence 445555554 456788888888876432332222334532 1122337899999999999875
No 278
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=21.56 E-value=1.4e+02 Score=25.35 Aligned_cols=30 Identities=20% Similarity=0.296 Sum_probs=23.9
Q ss_pred CeEEEeCCCCCCCHHHHHHHHhccCceEEE
Q 024018 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDI 130 (274)
Q Consensus 101 ~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v 130 (274)
....|+|||++++..-|..+++..-.+...
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~~~~~~~~ 125 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEEKFIIQDM 125 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhccCccceE
Confidence 457799999999999999999876555333
No 279
>KOG3861 consensus Sensory cilia assembly protein [Extracellular structures]
Probab=21.38 E-value=56 Score=28.39 Aligned_cols=34 Identities=21% Similarity=0.219 Sum_probs=25.8
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEE
Q 024018 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIEL 132 (274)
Q Consensus 99 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~ 132 (274)
++.+..+..+...++|+||.-+.++||.|..|.-
T Consensus 362 Ss~~~qLaq~tn~s~EedLefyi~kcg~Itgi~~ 395 (438)
T KOG3861|consen 362 SSARSQLAQMTNQSKEEDLEFYIKKCGRITGIVD 395 (438)
T ss_pred ccHHHHHHHHhccCccHHHHHHHHHhhhheeeec
Confidence 3334455566668999999999999999988743
No 280
>PF15063 TC1: Thyroid cancer protein 1
Probab=21.05 E-value=69 Score=21.41 Aligned_cols=29 Identities=14% Similarity=0.297 Sum_probs=24.3
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCce
Q 024018 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTV 127 (274)
Q Consensus 99 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~v 127 (274)
..++--+.||=.+++..+|+.+|..-|..
T Consensus 24 ~~RKkasaNIFe~vn~~qlqrLF~~sGD~ 52 (79)
T PF15063_consen 24 ASRKKASANIFENVNLDQLQRLFQKSGDK 52 (79)
T ss_pred HHhhhhhhhhhhccCHHHHHHHHHHccch
Confidence 44556688999999999999999999963
No 281
>PF09869 DUF2096: Uncharacterized protein conserved in archaea (DUF2096); InterPro: IPR017098 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=21.03 E-value=3.6e+02 Score=21.17 Aligned_cols=47 Identities=15% Similarity=0.072 Sum_probs=37.7
Q ss_pred cCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhC
Q 024018 201 NLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ 258 (274)
Q Consensus 201 nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 258 (274)
+|+..+.++-|.++.+ ++|.|.+. +.+ .-.+-|-+.+...+|++.+.
T Consensus 118 ~l~~~i~~erl~ei~E-~~gvI~Ef----ee~------~~V~I~Gdke~Ik~aLKe~s 164 (169)
T PF09869_consen 118 KLKKPIQEERLQEISE-WHGVIFEF----EED------DKVVIEGDKERIKKALKEFS 164 (169)
T ss_pred ecCccchHHHHHHHHH-HhceeEEe----cCC------cEEEEeccHHHHHHHHHHHH
Confidence 7899999999999999 58988665 221 25788999999999998653
No 282
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=20.34 E-value=2.9e+02 Score=24.99 Aligned_cols=51 Identities=24% Similarity=0.291 Sum_probs=37.8
Q ss_pred CCCHHHHHHHHhc----cCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHc
Q 024018 111 TSTHEDIRALFEQ----HGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNL 161 (274)
Q Consensus 111 ~~t~~~L~~~f~~----~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l 161 (274)
+....+|..+|.. +|.|..+.+...+.-..+...++.|.+.++|.+++..+
T Consensus 143 ~~~g~dl~~l~~Gs~GtlGiit~~~lkl~p~p~~~~~~~~~f~~~~~~~~~~~~~ 197 (413)
T TIGR00387 143 DVAGYDLTGLFVGSEGTLGIVTEATLKLLPKPENIVVALAFFDSIEKAMQAVYDI 197 (413)
T ss_pred CCCCCChhhhcccCCccceEEEEEEEEeecCCCccEEEEEECCCHHHHHHHHHHH
Confidence 3444567777743 78899888877665555667788999999999998654
No 283
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.02 E-value=2.4e+02 Score=17.63 Aligned_cols=48 Identities=13% Similarity=0.252 Sum_probs=28.9
Q ss_pred CHHHHHHHHhccCc-eEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHc
Q 024018 113 THEDIRALFEQHGT-VLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNL 161 (274)
Q Consensus 113 t~~~L~~~f~~~G~-v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l 161 (274)
.-.+|..+|...|. |..+.......+ ..+...+.+...++.+++++.|
T Consensus 14 ~L~~l~~~l~~~~i~i~~~~~~~~~~~-~~~~~~i~v~~~~~~~~~~~~L 62 (69)
T cd04909 14 VIAEVTQILGDAGISIKNIEILEIREG-IGGILRISFKTQEDRERAKEIL 62 (69)
T ss_pred HHHHHHHHHHHcCCCceeeEeEEeecC-CcEEEEEEECCHHHHHHHHHHH
Confidence 34678888988886 777765443222 2455567776555555555443
Done!