Query 024018
Match_columns 274
No_of_seqs 257 out of 2269
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 16:47:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024018.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024018hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3md3_A Nuclear and cytoplasmic 100.0 4.5E-38 1.6E-42 247.1 21.7 165 101-273 1-165 (166)
2 1fxl_A Paraneoplastic encephal 100.0 3.4E-37 1.2E-41 242.3 21.3 163 100-272 2-167 (167)
3 4f02_A Polyadenylate-binding p 100.0 1.7E-37 5.8E-42 254.4 19.3 165 99-273 14-179 (213)
4 1b7f_A Protein (SXL-lethal pro 100.0 3.7E-37 1.3E-41 242.6 20.3 164 99-272 2-168 (168)
5 1l3k_A Heterogeneous nuclear r 100.0 3.1E-36 1.1E-40 243.2 21.7 171 97-273 10-181 (196)
6 2qfj_A FBP-interacting repress 100.0 6.3E-36 2.2E-40 245.0 19.1 177 96-273 24-203 (216)
7 3nmr_A Cugbp ELAV-like family 100.0 3.6E-35 1.2E-39 232.6 20.2 164 99-272 2-174 (175)
8 2cjk_A Nuclear polyadenylated 100.0 2E-36 6.8E-41 238.2 11.9 162 99-273 2-164 (167)
9 2g4b_A Splicing factor U2AF 65 100.0 4E-35 1.4E-39 231.9 19.4 158 99-272 3-171 (172)
10 3tyt_A Heterogeneous nuclear r 100.0 2.8E-34 9.6E-39 233.5 18.8 168 99-273 3-205 (205)
11 2yh0_A Splicing factor U2AF 65 100.0 4E-34 1.4E-38 231.2 19.7 168 99-273 3-192 (198)
12 1fje_B Nucleolin RBD12, protei 100.0 4.1E-35 1.4E-39 232.6 12.4 164 96-273 9-172 (175)
13 3pgw_A U1-A; protein-RNA compl 100.0 2.1E-33 7.2E-38 239.4 22.7 169 97-273 6-281 (282)
14 3smz_A Protein raver-1, ribonu 100.0 3.5E-33 1.2E-37 238.2 22.0 167 99-273 94-262 (284)
15 2ghp_A U4/U6 snRNA-associated 100.0 9.3E-34 3.2E-38 242.8 17.6 171 99-273 116-289 (292)
16 2adc_A Polypyrimidine tract-bi 100.0 8.8E-33 3E-37 228.8 20.0 166 98-273 32-226 (229)
17 1qm9_A Polypyrimidine tract-bi 100.0 6.6E-33 2.3E-37 224.3 15.1 165 99-273 2-195 (198)
18 3smz_A Protein raver-1, ribonu 100.0 4.4E-32 1.5E-36 231.4 20.5 156 96-273 18-173 (284)
19 3sde_A Paraspeckle component 1 100.0 7E-32 2.4E-36 227.6 18.8 154 98-273 20-177 (261)
20 2ghp_A U4/U6 snRNA-associated 100.0 7.8E-32 2.7E-36 230.8 18.5 159 95-273 36-195 (292)
21 2kn4_A Immunoglobulin G-bindin 99.9 8.2E-25 2.8E-29 170.5 14.4 143 129-273 2-148 (158)
22 4f25_A Polyadenylate-binding p 99.9 2.8E-24 9.5E-29 158.6 11.0 110 99-210 4-113 (115)
23 2i2y_A Fusion protein consists 99.9 8.1E-24 2.8E-28 163.5 8.8 129 138-273 10-146 (150)
24 4fxv_A ELAV-like protein 1; RN 99.9 5.2E-22 1.8E-26 142.3 11.8 81 98-178 17-98 (99)
25 4fxv_A ELAV-like protein 1; RN 99.9 5.5E-22 1.9E-26 142.2 11.0 79 194-273 19-97 (99)
26 1u6f_A Tcubp1, RNA-binding pro 99.8 3.9E-20 1.3E-24 140.8 16.2 87 98-184 40-127 (139)
27 3s8s_A Histone-lysine N-methyl 99.8 8E-21 2.7E-25 138.7 11.4 81 192-273 4-84 (110)
28 2do4_A Squamous cell carcinoma 99.8 2.6E-20 8.9E-25 133.7 12.6 85 97-181 14-98 (100)
29 3s8s_A Histone-lysine N-methyl 99.8 2.5E-20 8.5E-25 136.0 11.9 82 98-179 4-86 (110)
30 2lxi_A RNA-binding protein 10; 99.8 3.3E-21 1.1E-25 136.0 6.7 83 100-182 1-86 (91)
31 2lkz_A RNA-binding protein 5; 99.8 3.9E-21 1.3E-25 136.4 6.8 81 192-273 7-93 (95)
32 2fy1_A RNA-binding motif prote 99.8 3.2E-20 1.1E-24 136.9 11.7 87 97-183 4-90 (116)
33 2lea_A Serine/arginine-rich sp 99.8 3.3E-21 1.1E-25 146.0 6.0 121 142-273 5-125 (135)
34 2d9p_A Polyadenylate-binding p 99.8 5.2E-20 1.8E-24 132.8 11.9 88 96-184 11-98 (103)
35 1rk8_A CG8781-PA, CG8781-PA pr 99.8 3.5E-20 1.2E-24 145.3 11.4 127 146-273 11-150 (165)
36 3md1_A Nuclear and cytoplasmic 99.8 7.2E-20 2.5E-24 126.7 11.5 80 101-180 2-82 (83)
37 3mdf_A Peptidyl-prolyl CIS-tra 99.8 3.3E-20 1.1E-24 129.0 9.8 81 192-273 5-85 (85)
38 3bs9_A Nucleolysin TIA-1 isofo 99.8 6E-20 2E-24 128.3 11.2 81 99-179 5-86 (87)
39 2dnh_A Bruno-like 5, RNA bindi 99.8 8.1E-20 2.8E-24 132.3 12.2 86 98-183 13-101 (105)
40 1whw_A Hypothetical protein ri 99.8 8.4E-20 2.9E-24 130.7 12.2 85 98-182 6-91 (99)
41 2cpz_A CUG triplet repeat RNA- 99.8 7.6E-20 2.6E-24 134.7 12.2 87 97-183 22-109 (115)
42 3lqv_A PRE-mRNA branch site pr 99.8 3.9E-20 1.3E-24 136.2 10.4 103 99-221 7-109 (115)
43 2dgo_A Cytotoxic granule-assoc 99.8 2.2E-19 7.5E-24 132.2 14.0 88 96-183 11-99 (115)
44 2ywk_A Putative RNA-binding pr 99.8 6.1E-20 2.1E-24 130.4 10.6 82 97-178 13-94 (95)
45 2hvz_A Splicing factor, argini 99.8 2.5E-20 8.6E-25 134.0 8.6 99 101-203 1-100 (101)
46 3md1_A Nuclear and cytoplasmic 99.8 8.5E-20 2.9E-24 126.3 10.9 79 194-273 1-79 (83)
47 2cq0_A Eukaryotic translation 99.8 8.8E-20 3E-24 131.6 11.4 88 96-183 11-99 (103)
48 2khc_A Testis-specific RNP-typ 99.8 6.5E-20 2.2E-24 135.6 10.8 82 96-177 36-118 (118)
49 2cqc_A Arginine/serine-rich sp 99.8 1.6E-19 5.4E-24 128.2 12.4 84 189-273 10-93 (95)
50 2e5h_A Zinc finger CCHC-type a 99.8 9.9E-20 3.4E-24 129.1 11.3 83 190-273 12-94 (94)
51 2cq3_A RNA-binding protein 9; 99.8 2.1E-19 7.1E-24 129.7 13.1 87 96-183 11-97 (103)
52 1s79_A Lupus LA protein; RRM, 99.8 4.5E-20 1.5E-24 133.0 9.6 82 96-178 7-88 (103)
53 3bs9_A Nucleolysin TIA-1 isofo 99.8 9.5E-20 3.3E-24 127.2 11.0 80 193-273 5-84 (87)
54 2dnz_A Probable RNA-binding pr 99.8 1.6E-19 5.6E-24 128.2 12.4 85 99-183 4-89 (95)
55 2cqi_A Nucleolysin TIAR; RNA r 99.8 1.9E-19 6.6E-24 129.8 12.9 87 96-183 11-97 (103)
56 2lxi_A RNA-binding protein 10; 99.8 5.8E-21 2E-25 134.7 4.7 79 194-273 1-81 (91)
57 3mdf_A Peptidyl-prolyl CIS-tra 99.8 7.8E-20 2.7E-24 127.1 10.2 80 98-177 5-85 (85)
58 3p5t_L Cleavage and polyadenyl 99.8 1.6E-20 5.4E-25 132.2 6.7 82 101-182 2-86 (90)
59 2dgs_A DAZ-associated protein 99.8 1.6E-19 5.5E-24 129.3 12.0 86 97-183 7-93 (99)
60 1x5u_A Splicing factor 3B subu 99.8 1.5E-19 5E-24 130.9 11.8 87 97-183 12-99 (105)
61 2cph_A RNA binding motif prote 99.8 1.5E-19 5.1E-24 131.3 11.8 88 96-183 11-101 (107)
62 2lkz_A RNA-binding protein 5; 99.8 2.1E-20 7.3E-25 132.5 6.8 82 97-178 6-94 (95)
63 2cpf_A RNA binding motif prote 99.8 1.9E-19 6.6E-24 128.6 11.9 85 99-183 4-92 (98)
64 2x1f_A MRNA 3'-END-processing 99.8 9.3E-20 3.2E-24 129.8 10.2 80 193-273 1-80 (96)
65 2x1f_A MRNA 3'-END-processing 99.8 1.3E-19 4.4E-24 129.0 10.9 82 100-181 2-84 (96)
66 1x5t_A Splicing factor 3B subu 99.8 1.3E-19 4.4E-24 129.0 10.5 85 99-183 4-90 (96)
67 2cqb_A Peptidyl-prolyl CIS-tra 99.8 1E-19 3.4E-24 131.1 10.0 86 98-183 10-96 (102)
68 1p27_B RNA-binding protein 8A; 99.8 1.8E-19 6.1E-24 130.7 11.3 83 98-180 21-104 (106)
69 2la6_A RNA-binding protein FUS 99.8 1.3E-19 4.5E-24 129.8 10.5 83 190-273 9-99 (99)
70 2do0_A HnRNP M, heterogeneous 99.8 4.6E-19 1.6E-23 130.2 13.6 86 97-182 12-97 (114)
71 2cqc_A Arginine/serine-rich sp 99.8 1.8E-19 6.2E-24 127.9 11.0 82 97-178 12-94 (95)
72 2jrs_A RNA-binding protein 39; 99.8 1.4E-19 4.6E-24 131.8 10.3 83 98-180 24-107 (108)
73 2e5h_A Zinc finger CCHC-type a 99.8 1.9E-19 6.4E-24 127.6 10.7 80 98-177 14-94 (94)
74 2dnm_A SRP46 splicing factor; 99.8 1.3E-19 4.5E-24 130.7 10.0 87 97-183 10-97 (103)
75 1x5s_A Cold-inducible RNA-bind 99.8 1.6E-19 5.6E-24 130.0 10.5 87 97-183 9-96 (102)
76 3ns6_A Eukaryotic translation 99.8 7.3E-20 2.5E-24 131.3 8.4 80 193-273 5-91 (100)
77 1sjq_A Polypyrimidine tract-bi 99.8 1.2E-19 4E-24 130.3 9.3 82 97-183 13-96 (105)
78 1x4h_A RNA-binding protein 28; 99.8 3.6E-19 1.2E-23 130.1 12.1 87 97-183 12-105 (111)
79 3n9u_C Cleavage and polyadenyl 99.8 2.1E-19 7.2E-24 139.2 11.3 82 98-179 53-137 (156)
80 2dhg_A TRNA selenocysteine ass 99.8 3.3E-19 1.1E-23 128.8 11.4 86 98-183 7-94 (104)
81 2dnz_A Probable RNA-binding pr 99.8 2.1E-19 7E-24 127.7 10.1 80 193-273 4-83 (95)
82 3ns6_A Eukaryotic translation 99.8 4.4E-20 1.5E-24 132.5 6.5 82 99-180 5-94 (100)
83 1oo0_B CG8781-PA, drosophila Y 99.8 2.6E-19 9E-24 130.7 10.7 85 97-181 23-108 (110)
84 1whw_A Hypothetical protein ri 99.8 2.7E-19 9.1E-24 128.1 10.5 81 192-273 6-86 (99)
85 3r27_A HnRNP L, heterogeneous 99.8 2.2E-19 7.5E-24 127.6 9.8 78 97-179 18-97 (100)
86 3p5t_L Cleavage and polyadenyl 99.8 4.2E-20 1.4E-24 130.0 6.0 78 195-273 2-81 (90)
87 2khc_A Testis-specific RNP-typ 99.8 1.7E-19 5.9E-24 133.4 9.6 83 190-273 36-118 (118)
88 3s7r_A Heterogeneous nuclear r 99.8 5.1E-19 1.8E-23 123.5 11.5 80 96-176 7-87 (87)
89 2la6_A RNA-binding protein FUS 99.8 3.1E-19 1.1E-23 127.8 10.6 79 99-177 12-99 (99)
90 4a8x_A RNA-binding protein wit 99.8 2.7E-19 9.2E-24 125.1 10.0 82 99-180 3-86 (88)
91 3ucg_A Polyadenylate-binding p 99.8 2.1E-19 7.1E-24 126.0 9.4 80 99-179 5-85 (89)
92 2wbr_A GW182, gawky, LD47780P; 99.8 1.9E-19 6.4E-24 123.6 8.8 73 100-177 7-79 (89)
93 3ulh_A THO complex subunit 4; 99.8 4.5E-19 1.6E-23 128.7 11.5 80 98-177 27-106 (107)
94 2dgo_A Cytotoxic granule-assoc 99.8 5.2E-19 1.8E-23 130.2 11.9 82 191-273 12-93 (115)
95 2cq0_A Eukaryotic translation 99.8 4E-19 1.4E-23 128.1 11.0 83 190-273 11-93 (103)
96 2err_A Ataxin-2-binding protei 99.8 1.2E-19 4.2E-24 132.3 8.3 83 96-179 25-107 (109)
97 2dgp_A Bruno-like 4, RNA bindi 99.8 2.8E-19 9.6E-24 129.6 10.2 87 97-183 10-100 (106)
98 1p27_B RNA-binding protein 8A; 99.8 3.3E-19 1.1E-23 129.3 10.5 82 191-273 20-101 (106)
99 2dng_A Eukaryotic translation 99.8 7.5E-19 2.6E-23 126.7 12.3 85 97-183 12-97 (103)
100 2dgx_A KIAA0430 protein; RRM d 99.8 4E-19 1.4E-23 126.5 10.6 81 99-181 8-92 (96)
101 2cq4_A RNA binding motif prote 99.8 1.5E-19 5.1E-24 132.9 8.7 84 97-181 22-106 (114)
102 2do4_A Squamous cell carcinoma 99.8 5.6E-19 1.9E-23 126.7 11.4 81 191-273 14-94 (100)
103 2cpz_A CUG triplet repeat RNA- 99.8 2.8E-19 9.7E-24 131.6 10.1 83 190-273 21-103 (115)
104 2dgv_A HnRNP M, heterogeneous 99.8 5.1E-19 1.7E-23 124.8 11.0 84 98-182 6-89 (92)
105 2cqd_A RNA-binding region cont 99.8 6.3E-19 2.1E-23 129.9 11.9 85 96-181 13-98 (116)
106 2div_A TRNA selenocysteine ass 99.8 3E-19 1E-23 127.8 9.9 84 98-181 7-96 (99)
107 2kxn_B Transformer-2 protein h 99.8 2.4E-19 8.1E-24 134.6 9.6 84 97-180 43-127 (129)
108 2dgw_A Probable RNA-binding pr 99.8 5.5E-19 1.9E-23 124.5 10.8 82 97-180 7-88 (91)
109 4f25_A Polyadenylate-binding p 99.8 3.3E-19 1.1E-23 131.2 10.0 77 194-273 5-81 (115)
110 2cpe_A RNA-binding protein EWS 99.8 4.1E-19 1.4E-23 130.3 10.4 88 96-183 11-107 (113)
111 2jrs_A RNA-binding protein 39; 99.8 3.1E-19 1.1E-23 129.9 9.6 84 189-273 21-104 (108)
112 2rs2_A Musashi-1, RNA-binding 99.8 4.8E-19 1.7E-23 129.1 10.6 86 96-182 21-107 (109)
113 1wi8_A EIF-4B, eukaryotic tran 99.8 6.1E-19 2.1E-23 127.4 11.0 84 98-183 13-98 (104)
114 2cqb_A Peptidyl-prolyl CIS-tra 99.8 2.6E-19 9E-24 128.8 9.0 82 191-273 9-90 (102)
115 1x5u_A Splicing factor 3B subu 99.8 4.1E-19 1.4E-23 128.5 10.0 83 190-273 11-93 (105)
116 1x4a_A Splicing factor, argini 99.8 1.6E-18 5.4E-23 126.3 13.2 84 97-182 19-102 (109)
117 2dgs_A DAZ-associated protein 99.8 4.6E-19 1.6E-23 126.9 10.1 81 191-273 7-87 (99)
118 2ywk_A Putative RNA-binding pr 99.8 5E-19 1.7E-23 125.6 10.2 81 191-273 13-93 (95)
119 1x5s_A Cold-inducible RNA-bind 99.8 2.7E-19 9.3E-24 128.8 8.8 82 191-273 9-90 (102)
120 2db1_A Heterogeneous nuclear r 99.8 2.8E-19 9.7E-24 132.2 9.0 82 97-179 14-98 (118)
121 2dh8_A DAZ-associated protein 99.8 4.6E-19 1.6E-23 128.3 9.9 87 96-183 12-99 (105)
122 1oo0_B CG8781-PA, drosophila Y 99.8 5.4E-19 1.9E-23 129.0 10.4 82 191-273 23-104 (110)
123 1x4d_A Matrin 3; structural ge 99.8 2.4E-19 8E-24 128.5 8.2 79 99-182 14-95 (102)
124 2div_A TRNA selenocysteine ass 99.8 3.2E-19 1.1E-23 127.7 8.9 82 191-273 6-92 (99)
125 2dnm_A SRP46 splicing factor; 99.8 2.2E-19 7.4E-24 129.5 8.0 82 191-273 10-91 (103)
126 3n9u_C Cleavage and polyadenyl 99.8 5.8E-19 2E-23 136.7 10.9 79 194-273 55-135 (156)
127 1x5t_A Splicing factor 3B subu 99.8 2.7E-19 9.2E-24 127.3 8.3 80 193-273 4-84 (96)
128 2cq1_A PTB-like protein L; RRM 99.8 1.1E-18 3.7E-23 125.1 11.4 80 98-182 13-94 (101)
129 2cpf_A RNA binding motif prote 99.8 4.1E-19 1.4E-23 126.9 9.3 80 193-273 4-86 (98)
130 1x4b_A Heterogeneous nuclear r 99.8 7E-19 2.4E-23 129.7 10.7 86 97-183 24-110 (116)
131 1x4h_A RNA-binding protein 28; 99.8 8E-19 2.7E-23 128.3 10.8 83 190-273 11-99 (111)
132 1wg5_A Heterogeneous nuclear r 99.8 9.2E-19 3.2E-23 126.5 10.9 83 98-181 13-96 (104)
133 2cph_A RNA binding motif prote 99.8 9.1E-19 3.1E-23 127.1 10.9 83 190-273 11-95 (107)
134 2j76_E EIF-4B, EIF4B, eukaryot 99.8 1.4E-19 4.7E-24 129.9 6.4 82 97-180 16-99 (100)
135 1p1t_A Cleavage stimulation fa 99.8 2.2E-19 7.5E-24 129.7 7.5 84 98-181 6-90 (104)
136 2kt5_A RNA and export factor-b 99.8 1E-18 3.5E-23 130.3 11.2 85 98-182 33-117 (124)
137 2m2b_A RNA-binding protein 10; 99.8 2.1E-19 7.1E-24 135.5 7.5 85 97-182 20-111 (131)
138 2kxn_B Transformer-2 protein h 99.8 4.9E-19 1.7E-23 132.9 9.4 83 190-273 42-124 (129)
139 3ulh_A THO complex subunit 4; 99.8 1.5E-18 5.2E-23 126.0 11.7 81 191-273 26-106 (107)
140 2cpy_A RNA-binding protein 12; 99.8 2.8E-19 9.5E-24 131.4 7.8 83 97-180 12-95 (114)
141 1u6f_A Tcubp1, RNA-binding pro 99.8 1E-18 3.6E-23 132.9 11.2 83 190-273 38-120 (139)
142 2cpi_A CCR4-NOT transcription 99.8 6.8E-19 2.3E-23 128.7 9.8 85 97-181 12-103 (111)
143 3s7r_A Heterogeneous nuclear r 99.8 1.3E-18 4.4E-23 121.5 10.6 80 191-272 8-87 (87)
144 3ucg_A Polyadenylate-binding p 99.8 8.1E-19 2.8E-23 123.0 9.6 78 194-273 6-83 (89)
145 2cqg_A TDP-43, TAR DNA-binding 99.8 3.4E-18 1.2E-22 123.2 13.0 85 96-182 11-96 (103)
146 1wex_A Hypothetical protein (r 99.8 1.2E-18 4.2E-23 125.6 10.5 79 99-182 14-94 (104)
147 2hgl_A HNRPF protein, heteroge 99.8 3.5E-19 1.2E-23 134.5 8.0 82 97-179 41-125 (136)
148 2dng_A Eukaryotic translation 99.8 1.3E-18 4.3E-23 125.5 10.6 80 191-273 12-91 (103)
149 2ad9_A Polypyrimidine tract-bi 99.8 8.5E-19 2.9E-23 128.8 9.7 81 98-183 29-111 (119)
150 2dnh_A Bruno-like 5, RNA bindi 99.8 1.5E-18 5.2E-23 125.5 10.9 81 191-273 12-95 (105)
151 4a8x_A RNA-binding protein wit 99.8 7.8E-19 2.7E-23 122.8 9.1 79 194-273 4-83 (88)
152 1s79_A Lupus LA protein; RRM, 99.8 6E-19 2.1E-23 127.1 8.7 79 192-273 9-87 (103)
153 2mss_A Protein (musashi1); RNA 99.8 3.6E-19 1.2E-23 120.7 7.1 74 102-176 1-75 (75)
154 2jwn_A Embryonic polyadenylate 99.8 1.1E-18 3.7E-23 130.2 10.4 85 96-181 32-117 (124)
155 2fc9_A NCL protein; structure 99.8 1.6E-18 5.5E-23 124.5 10.8 83 97-182 12-94 (101)
156 2dgp_A Bruno-like 4, RNA bindi 99.8 7.8E-19 2.7E-23 127.3 9.0 82 191-273 10-94 (106)
157 2wbr_A GW182, gawky, LD47780P; 99.8 1.2E-18 4E-23 119.6 9.3 72 194-272 7-78 (89)
158 2nlw_A Eukaryotic translation 99.8 6.7E-19 2.3E-23 127.5 8.6 81 98-179 13-100 (105)
159 2cqp_A RNA-binding protein 12; 99.8 5.2E-19 1.8E-23 126.3 7.8 81 192-273 13-93 (98)
160 2d9p_A Polyadenylate-binding p 99.8 1.8E-18 6.1E-23 124.7 10.7 80 191-273 12-91 (103)
161 2cqp_A RNA-binding protein 12; 99.8 5.9E-19 2E-23 126.1 8.1 81 99-179 14-95 (98)
162 1x5o_A RNA binding motif, sing 99.8 2.8E-18 9.5E-23 126.0 11.9 84 96-179 21-112 (114)
163 2fy1_A RNA-binding motif prote 99.8 9.2E-19 3.2E-23 129.0 9.2 80 192-273 5-84 (116)
164 3ex7_B RNA-binding protein 8A; 99.8 1.6E-18 5.3E-23 129.7 10.3 85 98-182 20-105 (126)
165 1h2v_Z 20 kDa nuclear CAP bind 99.8 3.6E-18 1.2E-22 132.5 12.7 86 97-182 36-122 (156)
166 2dis_A Unnamed protein product 99.8 2.4E-18 8.3E-23 125.3 11.0 84 99-182 7-95 (109)
167 2kt5_A RNA and export factor-b 99.8 2.5E-18 8.6E-23 128.2 11.2 82 190-273 31-112 (124)
168 2dgx_A KIAA0430 protein; RRM d 99.8 2E-18 6.7E-23 122.9 10.1 78 192-273 7-88 (96)
169 2cpe_A RNA-binding protein EWS 99.8 1.1E-18 3.8E-23 127.9 9.1 83 190-273 11-101 (113)
170 2ek1_A RNA-binding protein 12; 99.8 4.9E-19 1.7E-23 125.7 6.9 80 193-273 14-93 (95)
171 2cq4_A RNA binding motif prote 99.8 8.1E-19 2.8E-23 128.9 8.2 79 193-273 24-102 (114)
172 1p1t_A Cleavage stimulation fa 99.8 5.6E-19 1.9E-23 127.5 7.2 80 193-273 7-86 (104)
173 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 2.6E-18 8.9E-23 130.7 11.3 80 97-176 60-140 (140)
174 1wi8_A EIF-4B, eukaryotic tran 99.8 1.8E-18 6.2E-23 124.9 9.9 80 191-273 12-92 (104)
175 2la4_A Nuclear and cytoplasmic 99.8 9.7E-19 3.3E-23 125.6 8.4 78 97-179 24-101 (101)
176 2ytc_A PRE-mRNA-splicing facto 99.8 2.4E-18 8.2E-23 119.5 10.1 76 97-177 9-85 (85)
177 2dnq_A RNA-binding protein 4B; 99.8 3.4E-18 1.2E-22 120.1 11.0 79 98-183 6-84 (90)
178 2dnn_A RNA-binding protein 12; 99.8 8E-19 2.8E-23 127.5 7.9 79 99-179 15-93 (109)
179 2ek1_A RNA-binding protein 12; 99.8 6.6E-19 2.3E-23 125.0 7.3 79 99-177 14-93 (95)
180 1wez_A HnRNP H', FTP-3, hetero 99.8 1.1E-18 3.7E-23 125.6 8.5 81 98-180 13-93 (102)
181 2mss_A Protein (musashi1); RNA 99.8 3.7E-19 1.3E-23 120.7 5.7 75 196-272 1-75 (75)
182 2krb_A Eukaryotic translation 99.8 5.9E-19 2E-23 121.6 6.7 72 101-173 2-80 (81)
183 2cqd_A RNA-binding region cont 99.8 1.8E-18 6E-23 127.5 9.7 82 190-273 13-94 (116)
184 1sjq_A Polypyrimidine tract-bi 99.8 8.9E-19 3E-23 125.7 7.8 76 191-273 13-90 (105)
185 2dgv_A HnRNP M, heterogeneous 99.8 2E-18 6.7E-23 121.8 9.5 79 192-273 6-84 (92)
186 3ex7_B RNA-binding protein 8A; 99.8 1.6E-18 5.6E-23 129.6 9.5 82 191-273 19-100 (126)
187 2kn4_A Immunoglobulin G-bindin 99.8 2.7E-18 9.4E-23 133.4 11.1 85 98-182 68-153 (158)
188 1x4e_A RNA binding motif, sing 99.8 1.9E-19 6.5E-24 125.2 4.0 80 193-273 4-83 (85)
189 3pgw_S U1-70K; protein-RNA com 99.8 1.3E-19 4.5E-24 162.6 4.0 152 116-273 8-180 (437)
190 2dnp_A RNA-binding protein 14; 99.8 3.9E-18 1.3E-22 119.8 10.8 79 97-182 6-84 (90)
191 2jvo_A Nucleolar protein 3; nu 99.8 1.7E-18 5.8E-23 125.9 9.2 79 96-181 27-105 (108)
192 2cq3_A RNA-binding protein 9; 99.8 6.6E-18 2.3E-22 121.7 12.2 80 191-273 12-91 (103)
193 3r27_A HnRNP L, heterogeneous 99.8 2.7E-18 9.3E-23 121.9 9.9 76 191-273 18-95 (100)
194 2do0_A HnRNP M, heterogeneous 99.8 4.9E-18 1.7E-22 124.7 11.7 81 191-273 12-92 (114)
195 2a3j_A U1 small nuclear ribonu 99.8 2.4E-18 8.2E-23 128.5 10.1 81 99-181 28-112 (127)
196 2cqi_A Nucleolysin TIAR; RNA r 99.8 6.2E-18 2.1E-22 121.8 11.8 80 191-273 12-91 (103)
197 1x4g_A Nucleolysin TIAR; struc 99.8 5E-18 1.7E-22 123.7 11.4 82 96-182 21-102 (109)
198 2dhg_A TRNA selenocysteine ass 99.8 1.6E-18 5.4E-23 125.2 8.6 82 191-273 6-88 (104)
199 1x4e_A RNA binding motif, sing 99.8 3.3E-19 1.1E-23 123.9 4.8 79 99-177 4-83 (85)
200 2xnq_A Nuclear polyadenylated 99.8 4.6E-18 1.6E-22 121.2 10.8 76 97-179 19-95 (97)
201 1uaw_A Mouse-musashi-1; RNP-ty 99.8 6.3E-19 2.2E-23 120.1 6.1 75 101-176 1-76 (77)
202 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 3.3E-18 1.1E-22 130.1 10.7 83 189-272 58-140 (140)
203 2dgt_A RNA-binding protein 30; 99.8 5.8E-18 2E-22 119.4 11.2 80 97-183 7-86 (92)
204 2ki2_A SS-DNA binding protein 99.8 2.9E-19 1E-23 125.6 4.4 81 101-182 2-83 (90)
205 1x4f_A Matrin 3; structural ge 99.8 1.2E-18 4E-23 126.7 7.7 82 97-183 22-106 (112)
206 2cpj_A Non-POU domain-containi 99.8 2.9E-18 1E-22 122.7 9.6 81 97-182 12-92 (99)
207 1h2v_Z 20 kDa nuclear CAP bind 99.8 5.1E-18 1.7E-22 131.7 11.7 81 192-273 37-117 (156)
208 2dgw_A Probable RNA-binding pr 99.8 4.5E-18 1.5E-22 119.8 10.3 78 192-273 8-85 (91)
209 1why_A Hypothetical protein ri 99.8 4.6E-18 1.6E-22 121.2 10.4 78 99-181 16-95 (97)
210 2lmi_A GRSF-1, G-rich sequence 99.8 4.1E-19 1.4E-23 129.1 5.0 83 97-180 8-93 (107)
211 1wel_A RNA-binding protein 12; 99.8 1.6E-18 5.5E-23 129.3 8.1 81 98-179 23-104 (124)
212 2rs2_A Musashi-1, RNA-binding 99.8 3.1E-18 1.1E-22 124.8 9.4 81 191-273 22-102 (109)
213 2jwn_A Embryonic polyadenylate 99.8 3.7E-18 1.3E-22 127.3 10.0 78 194-273 36-113 (124)
214 2lea_A Serine/arginine-rich sp 99.8 1.2E-18 4E-23 131.9 7.3 87 97-183 44-131 (135)
215 1uaw_A Mouse-musashi-1; RNP-ty 99.8 6.9E-19 2.3E-23 119.9 5.5 77 195-273 1-77 (77)
216 2cpd_A Apobec-1 stimulating pr 99.8 1.2E-17 4E-22 119.5 12.1 79 97-182 12-92 (99)
217 2dh8_A DAZ-associated protein 99.8 1.8E-18 6.3E-23 125.1 7.9 82 190-273 12-93 (105)
218 2e5j_A Methenyltetrahydrofolat 99.8 3.5E-18 1.2E-22 121.8 9.1 79 98-180 17-95 (97)
219 1x4c_A Splicing factor, argini 99.8 1.6E-17 5.6E-22 120.7 12.6 80 98-183 13-97 (108)
220 1fjc_A Nucleolin RBD2, protein 99.8 2.2E-18 7.6E-23 122.6 7.8 82 96-181 12-93 (96)
221 2m2b_A RNA-binding protein 10; 99.7 6.1E-19 2.1E-23 132.9 5.0 81 191-273 20-106 (131)
222 2jvr_A Nucleolar protein 3; RN 99.7 3.1E-18 1.1E-22 124.7 8.4 78 99-179 27-105 (111)
223 2cpi_A CCR4-NOT transcription 99.7 3.6E-18 1.2E-22 124.9 8.8 82 191-273 12-99 (111)
224 1whx_A Hypothetical protein ri 99.7 2.9E-18 9.8E-23 125.4 8.2 78 97-179 7-84 (111)
225 2j76_E EIF-4B, EIF4B, eukaryot 99.7 6.5E-19 2.2E-23 126.4 4.7 80 191-273 16-96 (100)
226 3q2s_C Cleavage and polyadenyl 99.7 3.5E-18 1.2E-22 140.7 9.5 81 99-179 67-150 (229)
227 1nu4_A U1A RNA binding domain; 99.7 2.1E-18 7.2E-23 122.9 7.1 82 98-181 6-91 (97)
228 2dha_A FLJ20171 protein; RRM d 99.7 2E-18 6.9E-23 128.1 7.0 82 97-179 20-105 (123)
229 2xs2_A Deleted in azoospermia- 99.7 2.5E-18 8.4E-23 123.8 7.3 83 98-182 7-89 (102)
230 2dgu_A Heterogeneous nuclear r 99.7 1.7E-17 6E-22 119.5 11.7 78 99-183 10-87 (103)
231 2cqg_A TDP-43, TAR DNA-binding 99.7 1.7E-17 5.9E-22 119.5 11.7 80 191-273 12-91 (103)
232 2ki2_A SS-DNA binding protein 99.7 5.2E-19 1.8E-23 124.3 3.5 77 195-273 2-78 (90)
233 2cpx_A Hypothetical protein FL 99.7 1.1E-17 3.8E-22 122.9 10.7 83 98-183 23-109 (115)
234 2cq1_A PTB-like protein L; RRM 99.7 1.2E-17 4.1E-22 119.6 10.5 76 191-273 12-89 (101)
235 1x4a_A Splicing factor, argini 99.7 1.9E-17 6.4E-22 120.6 11.7 79 191-273 19-97 (109)
236 1x4d_A Matrin 3; structural ge 99.7 3.1E-18 1.1E-22 122.6 7.4 76 191-273 12-90 (102)
237 2dis_A Unnamed protein product 99.7 3.8E-18 1.3E-22 124.2 8.0 81 192-273 6-90 (109)
238 2fc8_A NCL protein; structure 99.7 1.6E-17 5.5E-22 119.4 11.1 83 97-182 12-95 (102)
239 2err_A Ataxin-2-binding protei 99.7 5.5E-18 1.9E-22 123.5 8.6 81 190-273 25-105 (109)
240 1rk8_A CG8781-PA, CG8781-PA pr 99.7 1.3E-17 4.6E-22 130.5 11.4 85 98-182 70-155 (165)
241 1x5o_A RNA binding motif, sing 99.7 1.6E-17 5.6E-22 121.9 10.8 81 191-273 22-110 (114)
242 1iqt_A AUF1, heterogeneous nuc 99.7 1.7E-18 5.9E-23 117.3 5.2 74 102-176 1-75 (75)
243 1x4b_A Heterogeneous nuclear r 99.7 4E-18 1.4E-22 125.6 7.5 79 193-273 26-104 (116)
244 2nlw_A Eukaryotic translation 99.7 5.2E-18 1.8E-22 122.7 8.0 78 193-273 14-98 (105)
245 2hgm_A HNRPF protein, heteroge 99.7 3.7E-18 1.3E-22 127.0 7.3 81 98-180 40-122 (126)
246 2ytc_A PRE-mRNA-splicing facto 99.7 2.1E-17 7.3E-22 114.7 10.7 76 191-273 9-85 (85)
247 2a3j_A U1 small nuclear ribonu 99.7 7.7E-18 2.6E-22 125.7 9.0 79 191-273 26-108 (127)
248 2cpy_A RNA-binding protein 12; 99.7 4.2E-18 1.4E-22 125.1 7.4 80 191-273 12-92 (114)
249 1fj7_A Nucleolin RBD1, protein 99.7 7.1E-19 2.4E-23 126.4 3.0 82 99-182 16-98 (101)
250 2db1_A Heterogeneous nuclear r 99.7 6.2E-18 2.1E-22 124.9 8.1 79 192-273 15-96 (118)
251 2kvi_A Nuclear polyadenylated 99.7 8.4E-18 2.9E-22 119.6 8.3 79 97-182 7-86 (96)
252 2ad9_A Polypyrimidine tract-bi 99.7 8.9E-18 3E-22 123.4 8.6 76 191-273 28-105 (119)
253 2cqh_A IGF-II mRNA-binding pro 99.7 1.2E-17 4.1E-22 118.0 8.8 79 99-183 7-87 (93)
254 2hgl_A HNRPF protein, heteroge 99.7 5.2E-18 1.8E-22 128.1 7.2 79 192-273 42-123 (136)
255 2krb_A Eukaryotic translation 99.7 2.9E-18 9.9E-23 118.1 5.4 73 195-270 2-81 (81)
256 1wex_A Hypothetical protein (r 99.7 1.4E-17 4.9E-22 119.9 9.0 76 191-273 12-89 (104)
257 1wg5_A Heterogeneous nuclear r 99.7 1.2E-17 4.2E-22 120.5 8.5 79 192-273 13-92 (104)
258 1wel_A RNA-binding protein 12; 99.7 3.7E-18 1.3E-22 127.3 5.9 80 192-273 23-102 (124)
259 2fc8_A NCL protein; structure 99.7 2.5E-17 8.4E-22 118.4 9.8 79 191-273 12-90 (102)
260 3q2s_C Cleavage and polyadenyl 99.7 8.2E-18 2.8E-22 138.5 8.2 80 193-273 67-148 (229)
261 1iqt_A AUF1, heterogeneous nuc 99.7 2E-18 6.8E-23 117.0 3.8 75 196-272 1-75 (75)
262 2e5g_A U6 snRNA-specific termi 99.7 5E-17 1.7E-21 115.1 11.2 79 99-182 7-85 (94)
263 2fc9_A NCL protein; structure 99.7 1.6E-17 5.5E-22 119.2 8.7 78 191-273 12-89 (101)
264 1wez_A HnRNP H', FTP-3, hetero 99.7 7.9E-18 2.7E-22 121.1 7.0 79 191-273 12-90 (102)
265 2jvr_A Nucleolar protein 3; RN 99.7 9.7E-18 3.3E-22 122.1 7.5 75 194-273 28-103 (111)
266 1wf1_A RNA-binding protein RAL 99.7 4.6E-17 1.6E-21 118.7 11.1 76 99-181 26-102 (110)
267 2dnn_A RNA-binding protein 12; 99.7 1.6E-17 5.3E-22 120.7 8.5 75 194-272 16-90 (109)
268 2hgn_A Heterogeneous nuclear r 99.7 2.3E-18 8E-23 130.4 4.1 83 97-181 43-125 (139)
269 2f3j_A RNA and export factor b 99.7 1.9E-17 6.4E-22 131.0 9.4 84 98-181 86-169 (177)
270 3lqv_A PRE-mRNA branch site pr 99.7 3.1E-17 1E-21 120.6 9.9 78 192-273 6-83 (115)
271 2i2y_A Fusion protein consists 99.7 2.1E-17 7.2E-22 127.3 9.3 80 97-180 70-149 (150)
272 2dnq_A RNA-binding protein 4B; 99.7 3.9E-17 1.3E-21 114.6 9.8 74 191-273 5-78 (90)
273 2j8a_A Histone-lysine N-methyl 99.7 1.5E-17 5.1E-22 121.8 7.7 78 195-273 3-94 (136)
274 1why_A Hypothetical protein ri 99.7 2.9E-17 9.8E-22 117.0 9.1 76 191-273 14-91 (97)
275 1x5p_A Negative elongation fac 99.7 1E-16 3.5E-21 114.1 11.8 79 97-182 12-90 (97)
276 2la4_A Nuclear and cytoplasmic 99.7 2.2E-17 7.5E-22 118.5 8.2 74 193-273 26-99 (101)
277 2xnq_A Nuclear polyadenylated 99.7 6.1E-17 2.1E-21 115.3 10.5 74 191-273 19-93 (97)
278 2cpx_A Hypothetical protein FL 99.7 6.3E-18 2.2E-22 124.3 5.5 82 191-273 22-103 (115)
279 2cq2_A Hypothetical protein LO 99.7 2.7E-17 9.1E-22 119.6 8.7 76 99-179 24-106 (114)
280 2lcw_A RNA-binding protein FUS 99.5 6.2E-19 2.1E-23 130.0 0.0 86 97-182 4-98 (116)
281 1fj7_A Nucleolin RBD1, protein 99.7 2.3E-18 7.9E-23 123.7 3.0 80 191-273 14-93 (101)
282 1x4g_A Nucleolysin TIAR; struc 99.7 3.6E-17 1.2E-21 119.1 9.4 75 192-273 23-97 (109)
283 1nu4_A U1A RNA binding domain; 99.7 9.5E-18 3.2E-22 119.5 6.2 79 191-273 5-87 (97)
284 1x4c_A Splicing factor, argini 99.7 6.1E-17 2.1E-21 117.7 10.3 74 192-273 13-91 (108)
285 2e5j_A Methenyltetrahydrofolat 99.7 5E-17 1.7E-21 115.8 9.6 77 191-273 16-92 (97)
286 2j8a_A Histone-lysine N-methyl 99.7 3E-17 1E-21 120.1 8.2 78 101-178 3-95 (136)
287 1wg1_A KIAA1579 protein, homol 99.7 5.2E-17 1.8E-21 113.5 9.2 76 99-180 4-79 (88)
288 2lmi_A GRSF-1, G-rich sequence 99.7 6E-18 2.1E-22 122.8 4.5 80 191-273 8-90 (107)
289 2jvo_A Nucleolar protein 3; nu 99.7 4.2E-17 1.4E-21 118.5 9.0 75 190-273 27-101 (108)
290 3zzy_A Polypyrimidine tract-bi 99.7 1E-16 3.4E-21 119.3 11.1 78 100-181 28-108 (130)
291 1sjr_A Polypyrimidine tract-bi 99.7 7.5E-17 2.6E-21 124.4 10.5 78 100-180 46-125 (164)
292 1x4f_A Matrin 3; structural ge 99.7 1.9E-17 6.7E-22 120.2 6.9 76 191-273 22-100 (112)
293 2cpj_A Non-POU domain-containi 99.7 3.4E-17 1.2E-21 117.1 8.0 76 191-273 12-87 (99)
294 4f02_A Polyadenylate-binding p 99.7 7.1E-17 2.4E-21 131.6 10.9 81 192-273 13-93 (213)
295 3egn_A RNA-binding protein 40; 99.7 2.1E-17 7E-22 126.3 7.1 85 98-182 43-133 (143)
296 1wf1_A RNA-binding protein RAL 99.7 2.7E-17 9.2E-22 120.0 7.4 92 167-273 6-98 (110)
297 2lcw_A RNA-binding protein FUS 99.5 1.2E-18 4E-23 128.5 0.0 81 192-273 5-93 (116)
298 1whx_A Hypothetical protein ri 99.7 3.6E-17 1.2E-21 119.5 7.9 74 193-273 9-82 (111)
299 2hgn_A Heterogeneous nuclear r 99.7 3.5E-18 1.2E-22 129.4 2.5 120 142-273 2-121 (139)
300 2dgt_A RNA-binding protein 30; 99.7 1.1E-16 3.7E-21 112.9 9.9 74 191-273 7-80 (92)
301 2cpd_A Apobec-1 stimulating pr 99.7 2.6E-16 8.9E-21 112.4 12.0 74 191-273 12-87 (99)
302 1fxl_A Paraneoplastic encephal 99.7 1.3E-16 4.4E-21 124.4 11.2 79 194-273 2-80 (167)
303 1fjc_A Nucleolin RBD2, protein 99.7 3E-17 1E-21 116.7 6.7 77 191-273 13-89 (96)
304 2e44_A Insulin-like growth fac 99.7 8.3E-17 2.8E-21 114.3 9.0 78 99-179 14-92 (96)
305 3md3_A Nuclear and cytoplasmic 99.7 1.8E-16 6E-21 123.5 11.7 80 98-177 85-165 (166)
306 2dgu_A Heterogeneous nuclear r 99.7 1.3E-16 4.5E-21 114.8 10.0 73 192-273 9-81 (103)
307 2dnp_A RNA-binding protein 14; 99.7 1.1E-16 3.8E-21 112.3 9.3 74 191-273 6-79 (90)
308 2pe8_A Splicing factor 45; RRM 99.7 2.3E-16 7.9E-21 113.8 11.2 81 192-273 6-92 (105)
309 2hzc_A Splicing factor U2AF 65 99.7 8.8E-17 3E-21 112.0 8.7 72 98-175 4-86 (87)
310 3zzy_A Polypyrimidine tract-bi 99.7 1.8E-16 6.3E-21 117.8 10.8 75 194-274 28-105 (130)
311 2f3j_A RNA and export factor b 99.7 7.1E-17 2.4E-21 127.7 9.1 81 191-273 85-165 (177)
312 2e5i_A Heterogeneous nuclear r 99.7 1.8E-16 6.2E-21 117.3 10.7 75 101-180 26-103 (124)
313 2xs2_A Deleted in azoospermia- 99.7 4.3E-17 1.5E-21 117.2 7.0 78 192-273 7-84 (102)
314 3d2w_A TAR DNA-binding protein 99.7 1.5E-16 5.2E-21 111.4 9.5 77 97-181 8-86 (89)
315 2hvz_A Splicing factor, argini 99.7 3E-17 1E-21 117.8 6.0 73 195-273 1-73 (101)
316 1b7f_A Protein (SXL-lethal pro 99.7 1.1E-16 3.7E-21 125.1 9.6 80 193-273 2-81 (168)
317 2dha_A FLJ20171 protein; RRM d 99.7 3.3E-17 1.1E-21 121.5 6.2 76 194-272 23-102 (123)
318 2diu_A KIAA0430 protein; struc 99.7 1.3E-16 4.4E-21 110.5 8.6 74 101-183 10-88 (96)
319 2qfj_A FBP-interacting repress 99.7 2.7E-16 9.3E-21 127.9 12.1 87 96-182 121-208 (216)
320 2kvi_A Nuclear polyadenylated 99.7 9.3E-17 3.2E-21 114.1 8.0 74 191-273 7-81 (96)
321 2cq2_A Hypothetical protein LO 99.7 8.5E-17 2.9E-21 117.0 7.8 76 191-273 22-104 (114)
322 3nmr_A Cugbp ELAV-like family 99.7 2.8E-16 9.7E-21 123.5 11.3 79 99-177 94-175 (175)
323 2g4b_A Splicing factor U2AF 65 99.7 2E-16 6.9E-21 124.1 10.4 79 99-177 93-172 (172)
324 1sjr_A Polypyrimidine tract-bi 99.7 2.1E-16 7E-21 121.9 10.0 76 194-274 46-123 (164)
325 2diu_A KIAA0430 protein; struc 99.7 1.4E-16 4.8E-21 110.3 7.9 70 193-273 7-82 (96)
326 2hgm_A HNRPF protein, heteroge 99.7 5.5E-17 1.9E-21 120.6 6.3 77 192-272 40-118 (126)
327 3beg_B Splicing factor, argini 99.7 1.3E-16 4.4E-21 117.3 8.2 76 99-180 15-95 (115)
328 1wg1_A KIAA1579 protein, homol 99.7 1.3E-16 4.6E-21 111.4 7.8 72 194-273 5-76 (88)
329 2yh0_A Splicing factor U2AF 65 99.7 5.3E-16 1.8E-20 124.5 12.5 85 97-181 111-196 (198)
330 2cqh_A IGF-II mRNA-binding pro 99.7 1.1E-16 3.8E-21 113.0 7.5 74 192-273 6-81 (93)
331 2voo_A Lupus LA protein; RNA-b 99.7 3.4E-16 1.2E-20 125.5 11.2 83 96-179 105-187 (193)
332 3egn_A RNA-binding protein 40; 99.7 2.8E-17 9.6E-22 125.6 4.4 82 191-273 42-128 (143)
333 2e44_A Insulin-like growth fac 99.7 2.1E-16 7.1E-21 112.3 8.4 76 193-273 14-90 (96)
334 2dnl_A Cytoplasmic polyadenyla 99.7 3.2E-16 1.1E-20 115.0 9.5 76 98-176 6-85 (114)
335 1x5p_A Negative elongation fac 99.7 7.1E-16 2.4E-20 109.7 10.8 74 191-273 12-85 (97)
336 2voo_A Lupus LA protein; RNA-b 99.7 2.4E-16 8.3E-21 126.3 8.9 120 150-273 63-185 (193)
337 2cjk_A Nuclear polyadenylated 99.7 1.6E-16 5.4E-21 124.1 7.5 80 99-179 86-166 (167)
338 2pe8_A Splicing factor 45; RRM 99.7 1E-15 3.5E-20 110.3 11.2 82 98-179 6-94 (105)
339 1wf0_A TDP-43, TAR DNA-binding 99.6 2.1E-16 7.3E-21 110.4 7.0 78 99-182 4-81 (88)
340 3pgw_S U1-70K; protein-RNA com 99.6 5.9E-16 2E-20 138.9 11.5 84 98-181 100-184 (437)
341 1l3k_A Heterogeneous nuclear r 99.6 7.7E-16 2.6E-20 123.3 10.9 81 191-273 10-90 (196)
342 2e5i_A Heterogeneous nuclear r 99.6 7.5E-16 2.6E-20 114.0 9.9 72 195-273 26-100 (124)
343 2e5g_A U6 snRNA-specific termi 99.6 5.7E-16 2E-20 109.6 8.4 73 194-273 8-80 (94)
344 2bz2_A Negative elongation fac 99.6 6.2E-16 2.1E-20 114.6 8.2 77 98-181 37-113 (121)
345 3tyt_A Heterogeneous nuclear r 99.6 1E-15 3.4E-20 124.0 9.2 75 193-273 3-78 (205)
346 3d2w_A TAR DNA-binding protein 99.6 1.3E-15 4.4E-20 106.6 8.6 73 191-273 8-82 (89)
347 1fje_B Nucleolin RBD12, protei 99.6 1.1E-15 3.7E-20 120.4 9.1 78 98-179 97-174 (175)
348 3beg_B Splicing factor, argini 99.6 5.3E-16 1.8E-20 114.0 6.8 71 194-272 16-91 (115)
349 2hzc_A Splicing factor U2AF 65 99.6 1.3E-15 4.5E-20 106.0 8.3 72 192-271 4-86 (87)
350 3u1l_A PRE-mRNA-splicing facto 99.6 1E-15 3.5E-20 125.7 8.4 80 97-181 131-231 (240)
351 2dnl_A Cytoplasmic polyadenyla 99.6 7.6E-16 2.6E-20 113.0 6.8 76 193-270 7-96 (114)
352 3v4m_A Splicing factor U2AF 65 99.6 3.5E-15 1.2E-19 107.6 9.5 80 192-272 3-94 (105)
353 2bz2_A Negative elongation fac 99.6 2.1E-15 7.2E-20 111.7 8.3 74 191-273 36-109 (121)
354 1jmt_A Splicing factor U2AF 35 99.6 1.9E-15 6.5E-20 108.8 6.6 72 199-272 20-103 (104)
355 3pgw_A U1-A; protein-RNA compl 99.6 7.3E-15 2.5E-19 124.5 11.0 79 191-273 6-88 (282)
356 3ue2_A Poly(U)-binding-splicin 99.6 9.1E-15 3.1E-19 107.4 9.8 79 193-272 19-106 (118)
357 1jmt_A Splicing factor U2AF 35 99.6 8.8E-16 3E-20 110.6 4.2 72 105-176 20-103 (104)
358 2dit_A HIV TAT specific factor 99.6 2.3E-14 7.8E-19 104.7 11.1 82 97-181 12-104 (112)
359 3u1l_A PRE-mRNA-splicing facto 99.6 1.1E-14 3.8E-19 119.5 9.5 76 191-273 131-227 (240)
360 2dit_A HIV TAT specific factor 99.6 2.9E-14 9.9E-19 104.1 10.3 79 190-273 11-100 (112)
361 1wf0_A TDP-43, TAR DNA-binding 99.5 3E-15 1E-19 104.4 4.1 73 193-273 4-76 (88)
362 3sde_A Paraspeckle component 1 99.5 2.5E-14 8.5E-19 120.1 10.4 85 98-182 94-182 (261)
363 3v4m_A Splicing factor U2AF 65 99.5 2E-14 6.8E-19 103.6 8.2 81 99-179 4-97 (105)
364 2adc_A Polypyrimidine tract-bi 99.5 1.4E-14 4.8E-19 119.2 8.0 76 192-273 32-108 (229)
365 1qm9_A Polypyrimidine tract-bi 99.5 2.7E-14 9.1E-19 114.7 7.6 77 99-179 119-197 (198)
366 3ue2_A Poly(U)-binding-splicin 99.5 8E-14 2.7E-18 102.4 9.1 80 99-178 19-108 (118)
367 2d9o_A DNAJ (HSP40) homolog, s 99.5 5.2E-13 1.8E-17 95.0 11.5 76 101-182 11-93 (100)
368 3s6e_A RNA-binding protein 39; 99.4 3.6E-13 1.2E-17 98.2 8.9 78 191-273 4-91 (114)
369 3tht_A Alkylated DNA repair pr 99.4 4.4E-13 1.5E-17 115.8 9.2 75 98-177 16-97 (345)
370 2d9o_A DNAJ (HSP40) homolog, s 99.4 2.1E-12 7.3E-17 91.8 9.5 62 204-273 27-88 (100)
371 3tht_A Alkylated DNA repair pr 99.4 9E-13 3.1E-17 113.8 9.0 77 189-272 13-96 (345)
372 3s6e_A RNA-binding protein 39; 99.4 1.9E-12 6.4E-17 94.4 8.9 78 99-179 6-93 (114)
373 2dnr_A Synaptojanin-1; RRM dom 99.2 1.3E-10 4.3E-15 79.7 8.1 73 191-273 4-84 (91)
374 1owx_A Lupus LA protein, SS-B, 99.2 1.3E-10 4.5E-15 84.8 8.6 75 99-178 17-95 (121)
375 2dnr_A Synaptojanin-1; RRM dom 99.1 1.9E-10 6.6E-15 78.8 8.3 74 99-180 6-87 (91)
376 1owx_A Lupus LA protein, SS-B, 99.1 9.2E-11 3.1E-15 85.7 6.7 75 190-271 14-92 (121)
377 3dxb_A Thioredoxin N-terminall 99.1 2E-10 6.9E-15 93.8 8.0 66 206-272 141-210 (222)
378 3dxb_A Thioredoxin N-terminall 99.0 6.8E-10 2.3E-14 90.6 8.1 67 112-178 141-212 (222)
379 1ufw_A Synaptojanin 2; RNP dom 99.0 5.6E-10 1.9E-14 76.9 6.0 72 190-271 11-91 (95)
380 1ufw_A Synaptojanin 2; RNP dom 98.9 2E-09 6.8E-14 74.1 6.0 71 99-177 14-93 (95)
381 2l9w_A U4/U6 snRNA-associated- 98.8 2.9E-08 1E-12 69.7 8.4 75 97-176 18-97 (117)
382 2l9w_A U4/U6 snRNA-associated- 98.8 5.9E-08 2E-12 68.1 9.2 70 194-270 21-95 (117)
383 2dhx_A Poly (ADP-ribose) polym 98.4 3.2E-06 1.1E-10 58.9 10.4 88 99-207 7-99 (104)
384 1wey_A Calcipressin 1; structu 98.1 1.9E-05 6.6E-10 55.2 8.5 76 99-179 4-84 (104)
385 1wey_A Calcipressin 1; structu 97.9 3.2E-05 1.1E-09 54.1 7.2 73 194-273 5-82 (104)
386 1uw4_A UPF3X; nonsense mediate 97.8 0.00015 5.2E-09 49.8 8.6 68 101-168 2-72 (91)
387 1uw4_A UPF3X; nonsense mediate 97.6 0.00052 1.8E-08 47.1 9.5 68 195-263 2-71 (91)
388 2dhx_A Poly (ADP-ribose) polym 97.6 0.00033 1.1E-08 48.7 8.3 68 194-270 8-79 (104)
389 1wwh_A Nucleoporin 35, nucleop 97.5 0.00059 2E-08 49.0 8.1 74 97-177 21-95 (119)
390 1wwh_A Nucleoporin 35, nucleop 97.3 0.0017 5.8E-08 46.6 9.0 70 193-271 23-93 (119)
391 2l08_A Regulator of nonsense t 97.1 0.0015 5E-08 45.2 6.3 69 100-168 9-80 (97)
392 1whv_A Poly(A)-specific ribonu 97.0 0.002 6.8E-08 44.3 6.6 55 194-258 16-70 (100)
393 1whv_A Poly(A)-specific ribonu 96.8 0.003 1E-07 43.4 6.1 55 99-161 15-69 (100)
394 2l08_A Regulator of nonsense t 96.8 0.002 6.8E-08 44.5 5.1 78 194-272 9-93 (97)
395 3ctr_A Poly(A)-specific ribonu 96.7 0.0017 5.9E-08 44.8 4.3 54 101-162 7-60 (101)
396 3pq1_A Poly(A) RNA polymerase; 96.6 0.0011 3.6E-08 59.3 3.4 59 97-160 50-108 (464)
397 3ctr_A Poly(A)-specific ribonu 96.5 0.0034 1.2E-07 43.3 4.3 54 195-258 7-60 (101)
398 3p3d_A Nucleoporin 53; structu 96.3 0.007 2.4E-07 44.1 5.6 78 100-179 7-99 (132)
399 3p3d_A Nucleoporin 53; structu 95.8 0.011 3.8E-07 43.0 4.4 74 195-271 8-95 (132)
400 3pq1_A Poly(A) RNA polymerase; 93.8 0.029 9.8E-07 50.1 2.7 56 194-256 53-108 (464)
401 3d45_A Poly(A)-specific ribonu 87.0 1.4 4.7E-05 39.9 7.0 55 100-162 440-494 (507)
402 3d45_A Poly(A)-specific ribonu 78.9 5.9 0.0002 35.8 7.7 55 195-259 441-495 (507)
403 3j21_T 50S ribosomal protein L 76.8 8.9 0.0003 25.5 6.2 57 197-256 25-82 (86)
404 1vq8_S 50S ribosomal protein L 62.7 12 0.00041 24.8 4.3 56 197-255 24-80 (85)
405 3u5e_X 60S ribosomal protein L 61.1 17 0.00058 26.6 5.3 58 196-256 80-138 (142)
406 4eyt_A Telomerase associated p 60.6 34 0.0012 22.7 7.2 55 194-257 12-66 (129)
407 4a17_R RPL23A, 60S ribosomal p 60.2 19 0.00066 26.5 5.4 57 197-256 89-146 (150)
408 4e8u_A Putative uncharacterize 60.0 21 0.00073 27.0 5.9 48 102-151 14-72 (172)
409 2g0c_A ATP-dependent RNA helic 58.7 4.7 0.00016 25.8 1.8 60 205-273 12-75 (76)
410 4eyt_A Telomerase associated p 56.6 41 0.0014 22.4 8.1 56 99-161 11-66 (129)
411 2zkr_s 60S ribosomal protein L 52.8 26 0.00088 26.0 5.1 57 197-256 95-152 (156)
412 3iz5_X 60S ribosomal protein L 52.2 17 0.0006 26.8 4.1 57 197-256 91-148 (152)
413 3j21_T 50S ribosomal protein L 43.1 69 0.0024 21.1 6.1 54 103-158 25-80 (86)
414 4bby_A Alkyldihydroxyacetoneph 32.8 45 0.0015 31.0 4.6 56 106-161 349-408 (658)
415 2m0o_A PHD finger protein 1; t 32.3 22 0.00074 22.9 1.7 20 219-246 44-63 (79)
416 2e5p_A Protein PHF1, PHD finge 30.5 24 0.00083 22.0 1.6 20 219-246 27-46 (68)
417 3u5c_Y RP50, 40S ribosomal pro 27.1 57 0.002 23.5 3.3 48 204-252 33-84 (135)
418 3lo3_A Uncharacterized conserv 25.5 1.5E+02 0.0051 19.6 5.3 45 210-255 25-71 (94)
419 2cu1_A Mitogen-activated prote 25.2 61 0.0021 22.0 3.0 54 199-260 21-74 (103)
420 3bbo_V Ribosomal protein L23; 24.4 18 0.00061 27.7 0.3 57 197-256 133-190 (198)
421 3mfb_A Uncharacterized protein 23.8 1.5E+02 0.0052 21.9 5.2 35 112-146 3-41 (157)
422 3ts2_A Protein LIN-28 homolog 23.3 11 0.00036 27.9 -1.1 28 115-149 2-29 (148)
423 3fut_A Dimethyladenosine trans 23.0 77 0.0026 25.7 3.9 31 101-132 111-141 (271)
424 2e5q_A PHD finger protein 19; 22.7 23 0.0008 21.7 0.5 11 236-246 34-44 (63)
425 2eqj_A Metal-response element- 22.7 41 0.0014 21.0 1.6 11 236-246 40-50 (66)
426 3swz_A Steroid 17-alpha-hydrox 22.5 89 0.003 27.1 4.6 59 103-170 17-79 (494)
427 2od0_A Hypothetical protein VP 22.2 71 0.0024 21.6 3.1 28 112-146 4-31 (105)
428 3lpe_A Putative transcription 21.1 75 0.0026 21.0 2.9 33 127-163 40-72 (92)
429 2lfv_A Protein DAMX; cell divi 26.3 21 0.00071 24.7 0.0 51 206-259 34-86 (106)
430 4hcz_A PHD finger protein 1; p 20.4 50 0.0017 20.0 1.6 11 236-246 30-40 (58)
No 1
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.5e-38 Score=247.06 Aligned_cols=165 Identities=26% Similarity=0.416 Sum_probs=154.7
Q ss_pred CeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeeccccc
Q 024018 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180 (274)
Q Consensus 101 ~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~ 180 (274)
++|||+|||+++++++|+++|+.||.|.++.+..+++|.++|||||+|.+.++|.+|++.|+|..+.|+.|.|.++....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 57999999999999999999999999999999999889999999999999999999999999999999999999997665
Q ss_pred CCCCCCCCCCCCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCc
Q 024018 181 KNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260 (274)
Q Consensus 181 ~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~ 260 (274)
.. ...+..+|||+|||..+++++|+++|+. ||.|.++.++.+..+|.++|||||+|.+.++|.+|++.|||.
T Consensus 81 ~~-------~~~~~~~l~v~nl~~~~t~~~l~~~f~~-~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 152 (166)
T 3md3_A 81 QS-------SSDDTFNLFVGDLNVNVDDETLRNAFKD-FPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQ 152 (166)
T ss_dssp CC-------CCTTCEEEEEESCCTTCCHHHHHHHHTT-STTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTC
T ss_pred CC-------CCCCCceEEECCCCCCCCHHHHHHHHhc-cCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCC
Confidence 42 2344789999999999999999999998 999999999999989999999999999999999999999999
Q ss_pred eeCCeEEEEEEee
Q 024018 261 VIMCLVIALSYLY 273 (274)
Q Consensus 261 ~i~g~~i~v~~a~ 273 (274)
.++|+.|+|+||+
T Consensus 153 ~~~g~~i~v~~a~ 165 (166)
T 3md3_A 153 DLNGRPLRINWAA 165 (166)
T ss_dssp EETTEECEEEESC
T ss_pred ccCCcEEEEEecC
Confidence 9999999999985
No 2
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=3.4e-37 Score=242.31 Aligned_cols=163 Identities=25% Similarity=0.445 Sum_probs=152.5
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecC-CCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeeccc
Q 024018 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178 (274)
Q Consensus 100 ~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 178 (274)
.++|||+|||+++++++|+++|+.||.|.++.+++++ +|.++|||||+|.+.++|.+|++.|+|..+.|+.|+|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 5789999999999999999999999999999999988 699999999999999999999999999999999999999986
Q ss_pred ccCCCCCCCCCCCCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhC
Q 024018 179 KKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ 258 (274)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 258 (274)
.... ....+|||+|||..+++++|+++|+. ||.|.++.+..+..+|.++|||||+|.+.++|.+|++.||
T Consensus 82 ~~~~---------~~~~~l~v~nl~~~~t~~~l~~~f~~-~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 151 (167)
T 1fxl_A 82 SSAS---------IRDANLYVSGLPKTMTQKELEQLFSQ-YGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 151 (167)
T ss_dssp CCGG---------GTTCEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred Cccc---------CCCCcEEECCCCCcCCHHHHHHHHHh-cCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhc
Confidence 5432 23578999999999999999999999 9999999999998889999999999999999999999999
Q ss_pred CceeCCeE--EEEEEe
Q 024018 259 GKVIMCLV--IALSYL 272 (274)
Q Consensus 259 g~~i~g~~--i~v~~a 272 (274)
|..++|+. |+|+||
T Consensus 152 g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 152 GQKPSGATEPITVKFA 167 (167)
T ss_dssp TCCCTTCSSCCEEEEC
T ss_pred CCccCCCccceEEEeC
Confidence 99999964 999887
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=1.7e-37 Score=254.36 Aligned_cols=165 Identities=22% Similarity=0.353 Sum_probs=150.0
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecC-CCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeecc
Q 024018 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (274)
Q Consensus 99 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 177 (274)
..++|||||||+++|+++|+++|++||.|.+|+|++++ +|+++|||||+|.+.++|.+|++.+++..+.|+.|++.++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 45789999999999999999999999999999999987 48999999999999999999999999999999999999987
Q ss_pred cccCCCCCCCCCCCCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHh
Q 024018 178 IKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAF 257 (274)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l 257 (274)
...... .....+|||+|||..+++++|+++|+. ||.|.++.|+.+. +.++|||||+|.+.++|.+|++.|
T Consensus 94 ~~~~~~-------~~~~~~l~v~nl~~~~t~~~l~~~F~~-~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~l 163 (213)
T 4f02_A 94 RDPSLR-------KSGVGNIFIKNLDKSIDNKALYDTFSA-FGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 163 (213)
T ss_dssp CCTHHH-------HHCTTEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHH
T ss_pred cccccc-------ccccccceECCcccccHHHHHHHHHhh-cCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHh
Confidence 543221 112468999999999999999999999 9999999999886 357999999999999999999999
Q ss_pred CCceeCCeEEEEEEee
Q 024018 258 QGKVIMCLVIALSYLY 273 (274)
Q Consensus 258 ~g~~i~g~~i~v~~a~ 273 (274)
||..|+|+.|+|.||+
T Consensus 164 ng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 164 NGMLLNDRKVFVGRFK 179 (213)
T ss_dssp TTCEETTEECEEEECC
T ss_pred CCCEECCEEEEEEEcC
Confidence 9999999999999984
No 4
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=3.7e-37 Score=242.58 Aligned_cols=164 Identities=23% Similarity=0.331 Sum_probs=153.8
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecC-CCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeecc
Q 024018 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (274)
Q Consensus 99 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 177 (274)
+.++|||+|||+++++++|+++|+.||.|.++.+++++ +|.++|||||+|.+.++|.+|++.|+|..++|+.|+|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 45789999999999999999999999999999999886 58999999999999999999999999999999999999998
Q ss_pred cccCCCCCCCCCCCCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHh
Q 024018 178 IKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAF 257 (274)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l 257 (274)
+.... .+..+|||+|||..+++++|+++|++ ||.|.++.++.+..+|.++|||||+|.+.++|.+|++.|
T Consensus 82 ~~~~~---------~~~~~l~v~nl~~~~t~~~l~~~f~~-~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 151 (168)
T 1b7f_A 82 PGGES---------IKDTNLYVTNLPRTITDDQLDTIFGK-YGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISAL 151 (168)
T ss_dssp CCSST---------TTTCEEEEESCCTTCCHHHHHHHHTS-SSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred CCccc---------CCCCCEEEeCCCCCCCHHHHHHhhhc-CCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHh
Confidence 66542 23688999999999999999999998 999999999999888999999999999999999999999
Q ss_pred CCceeCC--eEEEEEEe
Q 024018 258 QGKVIMC--LVIALSYL 272 (274)
Q Consensus 258 ~g~~i~g--~~i~v~~a 272 (274)
||..+.| ++|+|+||
T Consensus 152 ~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 152 NNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp TTCCCTTCSSCCEEEEC
T ss_pred cCCEecCCCeEEEEEeC
Confidence 9999987 99999997
No 5
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=3.1e-36 Score=243.17 Aligned_cols=171 Identities=19% Similarity=0.337 Sum_probs=151.0
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCC-CCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEee
Q 024018 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (274)
Q Consensus 97 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~-~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 175 (274)
....++|||+|||+++|+++|+++|+.||.|.+|.++.++. |.++|||||+|.+.++|.+|++. ++..+.|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKR 88 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeec
Confidence 34678899999999999999999999999999999999874 89999999999999999999985 99999999999999
Q ss_pred cccccCCCCCCCCCCCCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHH
Q 024018 176 AKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255 (274)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~ 255 (274)
+........ .....+.++|||+|||..+++++|+++|+. ||.|.++.++.+..+|.++|||||+|.+.++|.+|+.
T Consensus 89 ~~~~~~~~~---~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 164 (196)
T 1l3k_A 89 AVSREDSQR---PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ-YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 164 (196)
T ss_dssp CCC--------------CCSEEEEECCTTTCCHHHHHHHHTT-TSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred ccCcccccc---cccCCCcceEEEeCCCCCCCHHHHHHHHhc-CCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHH
Confidence 876644322 122334689999999999999999999998 9999999999999889999999999999999999999
Q ss_pred HhCCceeCCeEEEEEEee
Q 024018 256 AFQGKVIMCLVIALSYLY 273 (274)
Q Consensus 256 ~l~g~~i~g~~i~v~~a~ 273 (274)
. +|..++|+.|.|+||.
T Consensus 165 ~-~~~~~~G~~i~v~~a~ 181 (196)
T 1l3k_A 165 Q-KYHTVNGHNCEVRKAL 181 (196)
T ss_dssp C-SCCEETTEECEEEECC
T ss_pred h-CCcEECCEEEEEEecC
Confidence 6 8999999999999984
No 6
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=6.3e-36 Score=244.98 Aligned_cols=177 Identities=19% Similarity=0.286 Sum_probs=153.7
Q ss_pred ccCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecC-CCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEe
Q 024018 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174 (274)
Q Consensus 96 ~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 174 (274)
.....++|||+|||+++++++|+++|+.||.|.+|.++++. +|.++|||||+|.+.++|.+|++.|+|..++|+.|+|.
T Consensus 24 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 103 (216)
T 2qfj_A 24 ALAIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVG 103 (216)
T ss_dssp HHHHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEE
T ss_pred ccCcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEe
Confidence 34456889999999999999999999999999999999887 58999999999999999999999999999999999998
Q ss_pred ecccccCCCCCC--CCCCCCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHH
Q 024018 175 YAKIKKKNPFPP--VQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAET 252 (274)
Q Consensus 175 ~~~~~~~~~~~~--~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~ 252 (274)
++.......... ........++|||+|||..+++++|+++|+. ||.|.++.++.+..+|.++|||||+|.+.++|.+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~-~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~ 182 (216)
T 2qfj_A 104 RPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEA-FGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQD 182 (216)
T ss_dssp CCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTT-SSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred cCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhc-cCCeeEEEEEecCCCCCcCceEEEEecCHHHHHH
Confidence 876543211000 0001123578999999999999999999999 9999999999998899999999999999999999
Q ss_pred HHHHhCCceeCCeEEEEEEee
Q 024018 253 AISAFQGKVIMCLVIALSYLY 273 (274)
Q Consensus 253 A~~~l~g~~i~g~~i~v~~a~ 273 (274)
|++.|||..|+|+.|+|.||+
T Consensus 183 A~~~l~g~~~~g~~i~V~~a~ 203 (216)
T 2qfj_A 183 AVSSMNLFDLGGQYLRVGKAV 203 (216)
T ss_dssp HHHHHTTCBCSSSBCEEEECS
T ss_pred HHHHccCCEeCCcEEEEEEec
Confidence 999999999999999999985
No 7
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=3.6e-35 Score=232.55 Aligned_cols=164 Identities=26% Similarity=0.387 Sum_probs=148.5
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCC---CceeEEEEEECCHHHHHHHHHHcCCCeec---CcEEE
Q 024018 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKN---RNRGLAFVTMGSPDEATAALNNLESYEFE---GRTLK 172 (274)
Q Consensus 99 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~---~~~g~afv~f~~~~~a~~a~~~l~~~~~~---g~~i~ 172 (274)
+.++|||+|||+++++++|+++|+.||.|.++.+++++.+ +++|||||+|.+.++|.+|++.|+|..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 4578999999999999999999999999999999998864 89999999999999999999999998775 67888
Q ss_pred EeecccccCCCCCCCCCCCCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHH
Q 024018 173 VNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAET 252 (274)
Q Consensus 173 v~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~ 252 (274)
+.++...... ....++|||+|||..+++++|+++|+. ||.|.++.++.+.. |.++|||||+|.+.++|.+
T Consensus 82 ~~~~~~~~~~--------~~~~~~l~v~nl~~~~t~~~l~~~F~~-~G~i~~v~~~~~~~-g~~~g~afV~f~~~~~A~~ 151 (175)
T 3nmr_A 82 MKPADSEKNN--------AVEDRKLFIGMISKKCTENDIRVMFSS-FGQIEECRILRGPD-GLSRGCAFVTFTTRAMAQT 151 (175)
T ss_dssp EEECGGGCCS--------CGGGSEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEECTT-SCEEEEEEEEESSHHHHHH
T ss_pred Eccccccccc--------cCCCCeEEEcCCCCcCCHHHHHHHHHh-CCCEEEEEEEECCC-CCEEEEEEEEECCHHHHHH
Confidence 8887765442 234688999999999999999999999 99999999998864 8999999999999999999
Q ss_pred HHHHhCCceeC---CeEEEEEEe
Q 024018 253 AISAFQGKVIM---CLVIALSYL 272 (274)
Q Consensus 253 A~~~l~g~~i~---g~~i~v~~a 272 (274)
|++.|||..+. |++|+|+||
T Consensus 152 A~~~l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 152 AIKAMHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp HHHHHTTSCCCTTCSSCCEEEEC
T ss_pred HHHHhcCCcccCCCCCCeEEEec
Confidence 99999998876 499999997
No 8
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=2e-36 Score=238.22 Aligned_cols=162 Identities=19% Similarity=0.395 Sum_probs=149.7
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecC-CCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeecc
Q 024018 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (274)
Q Consensus 99 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 177 (274)
+.++|||+|||+++|+++|+++|+.||.|.++.+++++ +|.++|||||+|.+.++|.+|++ ++..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEccccccc
Confidence 46789999999999999999999999999999999986 59999999999999999999999 4689999999999987
Q ss_pred cccCCCCCCCCCCCCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHh
Q 024018 178 IKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAF 257 (274)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l 257 (274)
.+... .+..+|||+|||..+++++|+++|+. ||.|.++.++.+..+|.++|||||+|.+.++|.+|++ +
T Consensus 80 ~~~~~---------~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~ 148 (167)
T 2cjk_A 80 PRDEQ---------DKTGKIFVGGIGPDVRPKEFEEFFSQ-WGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-N 148 (167)
T ss_dssp CHHHH---------HHCEEEEEEEECTTCCHHHHHHHHHT-TSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-C
T ss_pred chhhc---------cCCCeEEECCCCCCCCHHHHHHHHHh-CccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-C
Confidence 65432 23578999999999999999999999 9999999999998889999999999999999999998 8
Q ss_pred CCceeCCeEEEEEEee
Q 024018 258 QGKVIMCLVIALSYLY 273 (274)
Q Consensus 258 ~g~~i~g~~i~v~~a~ 273 (274)
+|..++|+.|+|.||.
T Consensus 149 ~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 149 KFIDFKDRKIEIKRAE 164 (167)
T ss_dssp SEECSSSSCEEEEECC
T ss_pred CCEEeCCeEEEEeecC
Confidence 9999999999999985
No 9
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=100.00 E-value=4e-35 Score=231.87 Aligned_cols=158 Identities=23% Similarity=0.371 Sum_probs=145.0
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhcc----C-------ceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeec
Q 024018 99 SKTRLVAQNVPWTSTHEDIRALFEQH----G-------TVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFE 167 (274)
Q Consensus 99 ~~~~l~v~nLp~~~t~~~L~~~f~~~----G-------~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~ 167 (274)
+.++|||+|||+++|+++|+++|+.| | .|.++.+.+ ++|||||+|.+.++|.+|+ .|+|..+.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~-----~~g~afV~f~~~~~A~~A~-~~~~~~~~ 76 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-----DKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET-----TTTEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC-----CCCEEEEEeCCHHHHHHHH-HhCCcEec
Confidence 46789999999999999999999999 6 777777754 4899999999999999999 69999999
Q ss_pred CcEEEEeecccccCCCCCCCCCCCCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCH
Q 024018 168 GRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSK 247 (274)
Q Consensus 168 g~~i~v~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~ 247 (274)
|+.|+|.++...... ....+|||+|||..+++++|+++|++ ||.|.++.+..++.+|.++|||||+|.+.
T Consensus 77 g~~i~v~~~~~~~~~---------~~~~~l~v~nlp~~~t~~~l~~~f~~-~G~v~~v~i~~~~~~g~~~g~afV~f~~~ 146 (172)
T 2g4b_A 77 GQSLKIRRPHDYQPL---------PGAHKLFIGGLPNYLNDDQVKELLTS-FGPLKAFNLVKDSATGLSKGYAFCEYVDI 146 (172)
T ss_dssp TEECEEECCSSCCCC---------TTTTCEEEECCCTTCCHHHHHHHHHT-TSCEEEEEEEECTTTCSEEEEEEEEESST
T ss_pred CceeeecCCcccCCC---------CCCCEEEEEcCCCcCCHHHHHHHHHh-cCCceEEEEEecCCCCCcceEEEEEeCCH
Confidence 999999987654332 22688999999999999999999998 99999999999988899999999999999
Q ss_pred HHHHHHHHHhCCceeCCeEEEEEEe
Q 024018 248 KVAETAISAFQGKVIMCLVIALSYL 272 (274)
Q Consensus 248 ~~a~~A~~~l~g~~i~g~~i~v~~a 272 (274)
++|.+|++.|||..++|+.|+|+||
T Consensus 147 ~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 147 NVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp THHHHHHHHHTTCEETTEECEEEEC
T ss_pred HHHHHHHHHcCCCEECCeEEEEEeC
Confidence 9999999999999999999999997
No 10
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=100.00 E-value=2.8e-34 Score=233.48 Aligned_cols=168 Identities=15% Similarity=0.121 Sum_probs=143.3
Q ss_pred CCCeEEEeCCC-CCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeecc
Q 024018 99 SKTRLVAQNVP-WTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (274)
Q Consensus 99 ~~~~l~v~nLp-~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 177 (274)
+.++|||+||| +.+++++|+++|+.||.|.+|+++++ .+|||||+|.+.++|.+|++.|||..+.|+.|+|.+++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~ 78 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSK 78 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 45789999999 89999999999999999999999865 37999999999999999999999999999999999987
Q ss_pred cccCCCCCC----------------------------CCCCCCCccceEEecCCccccHHHHHHHHhhcCCce--EEEEE
Q 024018 178 IKKKNPFPP----------------------------VQPKPFATFNLFIANLSFEARAKDLREFFISEGWDV--VSAEV 227 (274)
Q Consensus 178 ~~~~~~~~~----------------------------~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v--~~~~i 227 (274)
.+...+... ......+..+|||+|||..+++++|+++|++ ||.| .++.+
T Consensus 79 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~-~G~v~~~~v~~ 157 (205)
T 3tyt_A 79 QPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDE-LGVKRPTSVKV 157 (205)
T ss_dssp CSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHH-HTCCCCSEEEE
T ss_pred CCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHh-cCCcceEEEEE
Confidence 543211000 0001234678999999999999999999999 8998 88888
Q ss_pred EEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCe----EEEEEEee
Q 024018 228 IFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCL----VIALSYLY 273 (274)
Q Consensus 228 ~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~----~i~v~~a~ 273 (274)
+.+. |.++|+|||+|.+.++|.+|+..|||..|.|+ ++.|+||+
T Consensus 158 ~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~f 205 (205)
T 3tyt_A 158 FSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLCF 205 (205)
T ss_dssp CSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEEC
T ss_pred EcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEecC
Confidence 7665 45679999999999999999999999999876 68888875
No 11
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=100.00 E-value=4e-34 Score=231.15 Aligned_cols=168 Identities=22% Similarity=0.350 Sum_probs=146.9
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhcc----C-------ceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeec
Q 024018 99 SKTRLVAQNVPWTSTHEDIRALFEQH----G-------TVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFE 167 (274)
Q Consensus 99 ~~~~l~v~nLp~~~t~~~L~~~f~~~----G-------~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~ 167 (274)
..++|||+|||+++++++|+++|+.| | .|.++.+. .++|||||+|.+.++|.+|+ .|+|..+.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~-----~~~g~afV~F~~~~~A~~Al-~l~g~~~~ 76 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-----QDKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE-----TTTTEEEEEESCSHHHHHHG-GGTTEEET
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec-----CCCCEEEEEeCCHHHHHHHH-HhcCCEEc
Confidence 46889999999999999999999999 5 56666664 45899999999999999999 69999999
Q ss_pred CcEEEEeecccccCCCCCC-----------CCCCCCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCC
Q 024018 168 GRTLKVNYAKIKKKNPFPP-----------VQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRS 236 (274)
Q Consensus 168 g~~i~v~~~~~~~~~~~~~-----------~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~ 236 (274)
|+.|+|.++.......... ......+.++|||+|||..+++++|+++|+. ||.|.++.+..+..+|.+
T Consensus 77 g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~-~G~v~~~~~~~~~~~~~~ 155 (198)
T 2yh0_A 77 GQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTS-FGPLKAFNLVKDSATGLS 155 (198)
T ss_dssp TEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHT-BSCEEEEEEEECTTTCSE
T ss_pred CceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHH-cCCccEEEEeecCCCCCc
Confidence 9999999987653322110 1112245689999999999999999999999 999999999999888999
Q ss_pred ccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEee
Q 024018 237 AGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSYLY 273 (274)
Q Consensus 237 ~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a~ 273 (274)
+|||||+|.+.++|.+|++.|||..++|+.|+|+||+
T Consensus 156 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 192 (198)
T 2yh0_A 156 KGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 192 (198)
T ss_dssp EEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESC
T ss_pred ceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 9999999999999999999999999999999999985
No 12
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=100.00 E-value=4.1e-35 Score=232.61 Aligned_cols=164 Identities=22% Similarity=0.291 Sum_probs=144.9
Q ss_pred ccCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEee
Q 024018 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (274)
Q Consensus 96 ~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 175 (274)
.....++|||+|||+++++++|+++|+.||.+..+.+....+|.++|||||+|.+.++|.+|++ |+|..+.|+.|+|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 87 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEec
Confidence 3456789999999999999999999999998766444444568899999999999999999996 999999999999999
Q ss_pred cccccCCCCCCCCCCCCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHH
Q 024018 176 AKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255 (274)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~ 255 (274)
+..+... ...+..+|||+|||..+++++|+++|++ ||.|..+ ..+|.++|||||+|.+.++|.+|++
T Consensus 88 ~~~~~~~-------~~~~~~~l~v~nlp~~~t~~~l~~~F~~-~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~ 154 (175)
T 1fje_B 88 PKGRDSK-------KVRAARTLLAKNLSFNITEDELKEVFED-ALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLE 154 (175)
T ss_dssp CCCSSCS-------TTGGGGEEEEESCCSSCCHHHHHHHCTT-CSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHH
T ss_pred CCCcccc-------ccccCCEEEEeCCCCCCCHHHHHHHHHh-cCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHH
Confidence 9876432 2345789999999999999999999999 8988655 5568899999999999999999999
Q ss_pred HhCCceeCCeEEEEEEee
Q 024018 256 AFQGKVIMCLVIALSYLY 273 (274)
Q Consensus 256 ~l~g~~i~g~~i~v~~a~ 273 (274)
.|||..++|+.|+|+||+
T Consensus 155 ~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 155 EKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp HHTEEEETTEEEEEEECS
T ss_pred HhCCCEECCeEEEEEecC
Confidence 999999999999999985
No 13
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=100.00 E-value=2.1e-33 Score=239.43 Aligned_cols=169 Identities=23% Similarity=0.300 Sum_probs=147.0
Q ss_pred cCCCCeEEEeCCCCCCCHHHHH----HHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEE
Q 024018 97 EYSKTRLVAQNVPWTSTHEDIR----ALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172 (274)
Q Consensus 97 ~~~~~~l~v~nLp~~~t~~~L~----~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~ 172 (274)
....++|||+|||+++++++|+ ++|+.||.|.+|.+.+ +|+++|||||+|.+.++|.+|++.|||..+.|+.|+
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 83 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 83 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC--CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEE
Confidence 4467899999999999999977 8999999999998875 678899999999999999999999999999999999
Q ss_pred EeecccccCCCCC-------------------------------------------------------------------
Q 024018 173 VNYAKIKKKNPFP------------------------------------------------------------------- 185 (274)
Q Consensus 173 v~~~~~~~~~~~~------------------------------------------------------------------- 185 (274)
|.++.........
T Consensus 84 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 163 (282)
T 3pgw_A 84 IQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPY 163 (282)
T ss_pred EEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCC
Confidence 9999765421000
Q ss_pred -----------------------------------CCCCCCCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEc
Q 024018 186 -----------------------------------PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFH 230 (274)
Q Consensus 186 -----------------------------------~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~ 230 (274)
.......+.++|||+|||..+++++|+++|+. ||.|.++.++.+
T Consensus 164 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~-~G~i~~v~~~~~ 242 (282)
T 3pgw_A 164 MPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQ-FPGFKEVRLVPG 242 (282)
T ss_pred CCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHh-cCCeEEEEEecC
Confidence 00012234578999999999999999999999 999999999854
Q ss_pred CCCCCCccEEEEEEcCHHHHHHHHHHhCCceeC-CeEEEEEEee
Q 024018 231 DNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM-CLVIALSYLY 273 (274)
Q Consensus 231 ~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~-g~~i~v~~a~ 273 (274)
. +|||||+|.+.++|.+|++.|||..++ |+.|+|+||+
T Consensus 243 ~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 243 R-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred C-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 3 589999999999999999999999999 9999999996
No 14
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=3.5e-33 Score=238.24 Aligned_cols=167 Identities=16% Similarity=0.206 Sum_probs=154.4
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecC-CCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeecc
Q 024018 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (274)
Q Consensus 99 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 177 (274)
..++|||+|||+.+++++|+++|+.||.|..+.++.+. +|.++|||||+|.+.++|.+|++.|+|..++|+.|.|.++.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 45789999999999999999999999999999999886 59999999999999999999999999999999999999998
Q ss_pred cccCCCCCCCCCCCCCccceEEecCCccc-cHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHH
Q 024018 178 IKKKNPFPPVQPKPFATFNLFIANLSFEA-RAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256 (274)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~l~V~nlp~~~-~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 256 (274)
.+.... ......+|||+|||..+ ++++|+++|+. ||.|.++.++.+. +|.++|+|||+|.+.++|.+|++.
T Consensus 174 ~~~~~~------~~~~~~~l~v~nlp~~~~~~~~l~~~f~~-~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~ 245 (284)
T 3smz_A 174 AGQLTP------ALLHSRCLCVDRLPPGFNDVDALCRALSA-VHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQ 245 (284)
T ss_dssp GGGCCT------TTTSCSEEEEECCCTTCCCHHHHHHHTCS-SSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHH
T ss_pred CCCCCc------ccCCccEEEEecCCcccCCHHHHHHHhhC-CCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHH
Confidence 875432 23446889999999995 99999999998 9999999999887 589999999999999999999999
Q ss_pred hCCceeCCeEEEEEEee
Q 024018 257 FQGKVIMCLVIALSYLY 273 (274)
Q Consensus 257 l~g~~i~g~~i~v~~a~ 273 (274)
|||..++|+.|+|+||.
T Consensus 246 l~g~~~~g~~l~v~~a~ 262 (284)
T 3smz_A 246 ADGLSLGGSHLRVSFCA 262 (284)
T ss_dssp HTTCEETTEECEEEECC
T ss_pred hCCCccCCeEEEEEEec
Confidence 99999999999999984
No 15
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=9.3e-34 Score=242.78 Aligned_cols=171 Identities=22% Similarity=0.263 Sum_probs=145.9
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccC-ceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeecc
Q 024018 99 SKTRLVAQNVPWTSTHEDIRALFEQHG-TVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (274)
Q Consensus 99 ~~~~l~v~nLp~~~t~~~L~~~f~~~G-~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 177 (274)
..++|||+|||+.+++++|+++|+.|| .|..+.++.+..|.++|||||+|.+.++|.+|++.|+|..++|+.|.|.++.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 195 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSN 195 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 578999999999999999999999999 9999999998888899999999999999999999999999999999999998
Q ss_pred cccCCCCCCCCCCCCCccceEEecCCcc-ccHHHHHHHHhhcCCceEEEEEEEcCC-CCCCccEEEEEEcCHHHHHHHHH
Q 024018 178 IKKKNPFPPVQPKPFATFNLFIANLSFE-ARAKDLREFFISEGWDVVSAEVIFHDN-PRRSAGYGFVSFKSKKVAETAIS 255 (274)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~l~V~nlp~~-~~~~~l~~~f~~~~G~v~~~~i~~~~~-~g~~~g~afV~f~~~~~a~~A~~ 255 (274)
+....... .....+..+|||+|||.. +++++|+++|+. ||.|.++.++.+.. +|.++|||||+|.+.++|.+|+
T Consensus 196 ~~~~~~~~--~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~-~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~- 271 (292)
T 2ghp_A 196 PLEKSKRT--DSATLEGREIMIRNLSTELLDENLLRESFEG-FGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL- 271 (292)
T ss_dssp CC-----------CCTTTEEEEEEECTTTCCHHHHHHHHGG-GSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-
T ss_pred CCcccccc--cccCCCCceEEEECCCcccCCHHHHHHHHhc-cCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-
Confidence 76543321 123345789999999999 999999999999 99999999998876 6899999999999999999999
Q ss_pred HhCCceeCCeEEEEEEee
Q 024018 256 AFQGKVIMCLVIALSYLY 273 (274)
Q Consensus 256 ~l~g~~i~g~~i~v~~a~ 273 (274)
.|||..|+|+.|+|+||+
T Consensus 272 ~l~g~~~~g~~i~V~~a~ 289 (292)
T 2ghp_A 272 QMNRSLLGNREISVSLAD 289 (292)
T ss_dssp GGTTEEETTEEEEEEECC
T ss_pred HhcCCEECCcEEEEEEec
Confidence 999999999999999985
No 16
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=100.00 E-value=8.8e-33 Score=228.75 Aligned_cols=166 Identities=16% Similarity=0.201 Sum_probs=145.0
Q ss_pred CCCCeEEEeCCCC-CCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeec
Q 024018 98 YSKTRLVAQNVPW-TSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (274)
Q Consensus 98 ~~~~~l~v~nLp~-~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 176 (274)
...++|||+|||+ ++++++|+++|+.||.|.+|.+..++ +|||||+|.+.++|.+|++.|+|..+.|+.|+|.++
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a 107 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 107 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 3568899999999 99999999999999999999998875 789999999999999999999999999999999999
Q ss_pred ccccCCCCCC--------------------------CCCCCCCccceEEecCCccccHHHHHHHHhhcCC-ceEEEEEEE
Q 024018 177 KIKKKNPFPP--------------------------VQPKPFATFNLFIANLSFEARAKDLREFFISEGW-DVVSAEVIF 229 (274)
Q Consensus 177 ~~~~~~~~~~--------------------------~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G-~v~~~~i~~ 229 (274)
.......... ......+.++|||+|||..+++++|+++|+. || .|.++.++.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~-~G~~i~~v~i~~ 186 (229)
T 2adc_A 108 KHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSS-NGGVVKGFKFFQ 186 (229)
T ss_dssp SCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHT-TSCCEEEEEECS
T ss_pred cCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHH-cCCCeeEEEEEE
Confidence 8652211110 0011234688999999999999999999999 89 999998864
Q ss_pred cCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeC-CeEEEEEEee
Q 024018 230 HDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM-CLVIALSYLY 273 (274)
Q Consensus 230 ~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~-g~~i~v~~a~ 273 (274)
+ .+|||||+|.+.++|.+|++.|+|..++ |+.|+|+||+
T Consensus 187 ~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~ 226 (229)
T 2adc_A 187 K-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 226 (229)
T ss_dssp S-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECS
T ss_pred C-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEec
Confidence 3 4789999999999999999999999999 9999999985
No 17
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=100.00 E-value=6.6e-33 Score=224.30 Aligned_cols=165 Identities=16% Similarity=0.207 Sum_probs=144.3
Q ss_pred CCCeEEEeCCCC-CCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeecc
Q 024018 99 SKTRLVAQNVPW-TSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (274)
Q Consensus 99 ~~~~l~v~nLp~-~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 177 (274)
+.++|||+|||+ .+++++|+++|+.||.|.+|.+..++ +|||||+|.+.++|.+|++.|+|..+.|+.|+|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 457899999999 99999999999999999999998764 7899999999999999999999999999999999998
Q ss_pred cccCCCCCC--------------------------CCCCCCCccceEEecCCccccHHHHHHHHhhcCC-ceEEEEEEEc
Q 024018 178 IKKKNPFPP--------------------------VQPKPFATFNLFIANLSFEARAKDLREFFISEGW-DVVSAEVIFH 230 (274)
Q Consensus 178 ~~~~~~~~~--------------------------~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G-~v~~~~i~~~ 230 (274)
......... ......+..+|||+|||..+++++|+++|+. || .|.++.++.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~-~G~~v~~v~i~~~ 156 (198)
T 1qm9_A 78 HQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSS-NGGVVKGFKFFQK 156 (198)
T ss_dssp CCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHH-TTSCCCEEEESST
T ss_pred CCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHH-cCCCceEEEEEeC
Confidence 653211110 0111245788999999999999999999999 89 9999988653
Q ss_pred CCCCCCccEEEEEEcCHHHHHHHHHHhCCceeC-CeEEEEEEee
Q 024018 231 DNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM-CLVIALSYLY 273 (274)
Q Consensus 231 ~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~-g~~i~v~~a~ 273 (274)
.+|+|||+|.+.++|.+|+..|||..++ |+.|+|+|++
T Consensus 157 -----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 195 (198)
T 1qm9_A 157 -----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 195 (198)
T ss_dssp -----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEEC
T ss_pred -----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeec
Confidence 3789999999999999999999999999 9999999986
No 18
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=4.4e-32 Score=231.44 Aligned_cols=156 Identities=20% Similarity=0.299 Sum_probs=145.7
Q ss_pred ccCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEee
Q 024018 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (274)
Q Consensus 96 ~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 175 (274)
.....++|||+|||+++|+++|+++|+.|| |..+.+ +.++|||||+|.+.++|.+|++.|+|..+.|+.|.|.+
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~-----~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~ 91 (284)
T 3smz_A 18 QFRNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV-----DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQL 91 (284)
T ss_dssp HHHCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE-----ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE-----ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEe
Confidence 345678999999999999999999999999 998888 45689999999999999999999999999999999998
Q ss_pred cccccCCCCCCCCCCCCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHH
Q 024018 176 AKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255 (274)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~ 255 (274)
+.. ..+|||+|||..+++++|+++|+. ||.|..+.++.+..+|.++|||||+|.+.++|.+|++
T Consensus 92 ~~~---------------~~~l~v~nlp~~~t~~~l~~~f~~-~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~ 155 (284)
T 3smz_A 92 QPT---------------DALLCVANLPPSLTQQQFEELVRP-FGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKS 155 (284)
T ss_dssp CCC---------------SCEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred cCC---------------CCEEEEcCCCCcCCHHHHHHHHHh-cCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHH
Confidence 532 468999999999999999999999 9999999999999899999999999999999999999
Q ss_pred HhCCceeCCeEEEEEEee
Q 024018 256 AFQGKVIMCLVIALSYLY 273 (274)
Q Consensus 256 ~l~g~~i~g~~i~v~~a~ 273 (274)
.|+|..++|+.|.|.|+.
T Consensus 156 ~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 156 DLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp HHTTCEETTEECEEEECC
T ss_pred HhCCCEeCCcEEEEEECC
Confidence 999999999999999974
No 19
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=100.00 E-value=7e-32 Score=227.61 Aligned_cols=154 Identities=26% Similarity=0.355 Sum_probs=141.9
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeecc
Q 024018 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (274)
Q Consensus 98 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 177 (274)
...++|||+|||+++|+++|+++|+.||.|..|.+.++ +|||||+|.+.++|.+|+..|+|..+.|+.|.|.++.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 94 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD-----RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFAT 94 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT-----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecc
Confidence 35678999999999999999999999999999999654 8999999999999999999999999999999999986
Q ss_pred cccCCCCCCCCCCCCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHh
Q 024018 178 IKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAF 257 (274)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l 257 (274)
. ..+|||+|||..+++++|+++|+. ||.|.++.++.+ .+|.++|||||+|.+.++|.+|+..|
T Consensus 95 ~---------------~~~l~v~nl~~~~t~~~l~~~F~~-~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l 157 (261)
T 3sde_A 95 H---------------GAALTVKNLSPVVSNELLEQAFSQ-FGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERC 157 (261)
T ss_dssp C---------------SSEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHH
T ss_pred c---------------CCcccccCCCCCCCHHHHHHHHHh-cCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHh
Confidence 3 468999999999999999999998 999999999999 47999999999999999999999999
Q ss_pred C-CceeC---CeEEEEEEee
Q 024018 258 Q-GKVIM---CLVIALSYLY 273 (274)
Q Consensus 258 ~-g~~i~---g~~i~v~~a~ 273 (274)
+ |..+. |++|.|.++.
T Consensus 158 ~~~~~~~~~~~r~i~v~~~~ 177 (261)
T 3sde_A 158 GDGAFLLTTTPRPVIVEPME 177 (261)
T ss_dssp HHSCEESSSSCCBCEEEECC
T ss_pred cCCeEEecCCCceEEEeecc
Confidence 4 55555 9999999874
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=7.8e-32 Score=230.80 Aligned_cols=159 Identities=14% Similarity=0.199 Sum_probs=139.1
Q ss_pred hccCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEe
Q 024018 95 EEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174 (274)
Q Consensus 95 ~~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 174 (274)
..+...++|||+|||+++|+++|+++|+.||.|.+|.++++..+ ++|||||+|.+.++|.+|++ ++|..++|+.|.|.
T Consensus 36 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~ 113 (292)
T 2ghp_A 36 TRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK-NFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVS 113 (292)
T ss_dssp ------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS-SSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC-CcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEE
Confidence 34567899999999999999999999999999999999998766 48999999999999999996 89999999999999
Q ss_pred ecccccCCCCCCCCCCCCCccceEEecCCccccHHHHHHHHhhcCC-ceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHH
Q 024018 175 YAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGW-DVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETA 253 (274)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G-~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A 253 (274)
++. .++|||+|||..+++++|+++|+. || .|.++.++.+.. |.++|||||+|.+.++|.+|
T Consensus 114 ~~~----------------~~~l~v~nlp~~~t~~~l~~~f~~-~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A 175 (292)
T 2ghp_A 114 HLT----------------ECTLWMTNFPPSYTQRNIRDLLQD-INVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYC 175 (292)
T ss_dssp ECC----------------SCEEEEECCCTTCCHHHHHHHHHH-TTCCCCEEECC--------CCEEEEECSSHHHHHHH
T ss_pred ECC----------------CCEEEEECCCCCCCHHHHHHHHHH-hCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHH
Confidence 862 578999999999999999999999 99 999999988876 78899999999999999999
Q ss_pred HHHhCCceeCCeEEEEEEee
Q 024018 254 ISAFQGKVIMCLVIALSYLY 273 (274)
Q Consensus 254 ~~~l~g~~i~g~~i~v~~a~ 273 (274)
++.|+|..+.|+.|.|.|+.
T Consensus 176 ~~~l~g~~~~g~~l~v~~a~ 195 (292)
T 2ghp_A 176 VEKLNGLKIEGYTLVTKVSN 195 (292)
T ss_dssp HHHHTTCEETTEECEEEECC
T ss_pred HHHhCCCEeCCcEEEEEECC
Confidence 99999999999999999974
No 21
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.92 E-value=8.2e-25 Score=170.52 Aligned_cols=143 Identities=17% Similarity=0.164 Sum_probs=111.5
Q ss_pred EEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeecccc----cCCCCCCCCCCCCCccceEEecCCc
Q 024018 129 DIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK----KKNPFPPVQPKPFATFNLFIANLSF 204 (274)
Q Consensus 129 ~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~----~~~~~~~~~~~~~~~~~l~V~nlp~ 204 (274)
.+.+..+.. .++|||||+|.+.++|++|++.+++....+..+.+...... ................+|||+|||.
T Consensus 2 ~~kl~ln~~-~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~ 80 (158)
T 2kn4_A 2 QYKLILNGK-TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTY 80 (158)
T ss_dssp EEEEEEECS-SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCT
T ss_pred cEEEEecCc-cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCC
Confidence 345555544 68999999999999999999887753332222222211111 0011111222334578999999999
Q ss_pred cccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEee
Q 024018 205 EARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSYLY 273 (274)
Q Consensus 205 ~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a~ 273 (274)
.+++++|+++|+. ||.|.++.++.+..+|.++|||||+|.+.++|.+|++.|||..++|+.|+|.||+
T Consensus 81 ~~~~~~l~~~F~~-~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 148 (158)
T 2kn4_A 81 RTSPDTLRRVFEK-YGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 148 (158)
T ss_dssp TCCHHHHHHHHHH-HSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEEC
T ss_pred CCCHHHHHHHHHh-cCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 9999999999999 9999999999998899999999999999999999999999999999999999985
No 22
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.91 E-value=2.8e-24 Score=158.58 Aligned_cols=110 Identities=15% Similarity=0.245 Sum_probs=75.5
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeeccc
Q 024018 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178 (274)
Q Consensus 99 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 178 (274)
..++|||+|||+++++++|+++|+.||.|.+|+|+++.. .++|||||+|.+.++|.+|++.|+|..++|+.|+|.++..
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~-~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-EEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCC-CCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 346799999999999999999999999999999998864 4799999999999999999999999999999999999987
Q ss_pred ccCCCCCCCCCCCCCccceEEecCCccccHHH
Q 024018 179 KKKNPFPPVQPKPFATFNLFIANLSFEARAKD 210 (274)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~ 210 (274)
+........ .......+|||+|||..+|++.
T Consensus 83 ~~~~~~~~~-~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 83 RKEREAELG-ARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CCC-----------------------------
T ss_pred ccccccccc-cccCCCCceEeCCCCCCccccc
Confidence 654432221 2222346799999999998864
No 23
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.90 E-value=8.1e-24 Score=163.50 Aligned_cols=129 Identities=13% Similarity=0.139 Sum_probs=111.8
Q ss_pred CCceeEEEEEECCHHHHHHHHHHc-CCCeecCcEEEEeecccccCC-------CCCCCCCCCCCccceEEecCCccccHH
Q 024018 138 NRNRGLAFVTMGSPDEATAALNNL-ESYEFEGRTLKVNYAKIKKKN-------PFPPVQPKPFATFNLFIANLSFEARAK 209 (274)
Q Consensus 138 ~~~~g~afv~f~~~~~a~~a~~~l-~~~~~~g~~i~v~~~~~~~~~-------~~~~~~~~~~~~~~l~V~nlp~~~~~~ 209 (274)
...+|+++|+|.+.++|++|++.+ ||..++| .+.+.++...... ..........+.++|||+|||..++++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~ 88 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKT 88 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCH
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHH
Confidence 466999999999999999999999 9999999 9999988754221 111223334557899999999999999
Q ss_pred HHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEee
Q 024018 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSYLY 273 (274)
Q Consensus 210 ~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a~ 273 (274)
+|+++|+. ||.|.++.++.+ ++|||||+|.+.++|.+|++.|||..++|+.|+|+||+
T Consensus 89 ~l~~~F~~-~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 146 (150)
T 2i2y_A 89 ELERAFGY-YGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSN 146 (150)
T ss_dssp HHHHHHHH-HSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECC
T ss_pred HHHHHHHh-hCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcC
Confidence 99999999 999999999765 58999999999999999999999999999999999985
No 24
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.88 E-value=5.2e-22 Score=142.28 Aligned_cols=81 Identities=27% Similarity=0.493 Sum_probs=76.9
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCC-CCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeec
Q 024018 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (274)
Q Consensus 98 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~-~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 176 (274)
...++|||+|||+++|+++|+++|++||.|.++++++++. |.++|||||+|.+.++|.+|++.|||..++|+.|+|.++
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 3567899999999999999999999999999999999874 999999999999999999999999999999999999999
Q ss_pred cc
Q 024018 177 KI 178 (274)
Q Consensus 177 ~~ 178 (274)
+|
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 75
No 25
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.87 E-value=5.5e-22 Score=142.16 Aligned_cols=79 Identities=33% Similarity=0.431 Sum_probs=76.9
Q ss_pred ccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEee
Q 024018 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSYLY 273 (274)
Q Consensus 194 ~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a~ 273 (274)
+.+|||+|||..+++++|+++|++ ||.|.++.++++..+|.++|||||+|.+.++|.+|++.|||..++|+.|+|+||+
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~-~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSS-IGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHT-TSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 578999999999999999999999 9999999999999999999999999999999999999999999999999999996
No 26
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.85 E-value=3.9e-20 Score=140.84 Aligned_cols=87 Identities=24% Similarity=0.398 Sum_probs=80.5
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCC-CCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeec
Q 024018 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (274)
Q Consensus 98 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~-~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 176 (274)
...++|||+|||.++++++|+++|+.||.|.+|.++.++. |+++|||||+|.+.++|.+|++.|+|..++|+.|+|.++
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 119 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3568899999999999999999999999999999999874 889999999999999999999999999999999999999
Q ss_pred ccccCCCC
Q 024018 177 KIKKKNPF 184 (274)
Q Consensus 177 ~~~~~~~~ 184 (274)
..+.....
T Consensus 120 ~~~~~~~~ 127 (139)
T 1u6f_A 120 ASGHQRPG 127 (139)
T ss_dssp SCCCCCCC
T ss_pred CCCCCCCC
Confidence 98766543
No 27
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.85 E-value=8e-21 Score=138.66 Aligned_cols=81 Identities=19% Similarity=0.216 Sum_probs=78.1
Q ss_pred CCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 024018 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271 (274)
Q Consensus 192 ~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~ 271 (274)
.+.++|||+|||..+++++|+++|++ ||.|.++.|+.|+.+|+++|||||+|++.++|.+|++.|||..++|+.|+|.+
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~-~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRK-YGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTT-TSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHh-cCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45789999999999999999999998 99999999999999999999999999999999999999999999999999999
Q ss_pred ee
Q 024018 272 LY 273 (274)
Q Consensus 272 a~ 273 (274)
|+
T Consensus 83 a~ 84 (110)
T 3s8s_A 83 DI 84 (110)
T ss_dssp CS
T ss_pred CC
Confidence 85
No 28
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=2.6e-20 Score=133.70 Aligned_cols=85 Identities=22% Similarity=0.454 Sum_probs=79.9
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeec
Q 024018 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (274)
Q Consensus 97 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 176 (274)
....++|||+|||+++++++|+++|+.||.|..+.+..+++|+++|||||+|.+.++|.+|++.|+|..++|+.|+|.++
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 44668899999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccccC
Q 024018 177 KIKKK 181 (274)
Q Consensus 177 ~~~~~ 181 (274)
.++..
T Consensus 94 ~~~~~ 98 (100)
T 2do4_A 94 NSGPS 98 (100)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 87654
No 29
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.84 E-value=2.5e-20 Score=136.04 Aligned_cols=82 Identities=16% Similarity=0.218 Sum_probs=77.4
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCC-CCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeec
Q 024018 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (274)
Q Consensus 98 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~-~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 176 (274)
...++|||+|||+++++++|+++|++||.|.++.|+.++. |+++|||||+|.+.++|.+|++.|||..++|+.|+|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3567899999999999999999999999999999999875 999999999999999999999999999999999999998
Q ss_pred ccc
Q 024018 177 KIK 179 (274)
Q Consensus 177 ~~~ 179 (274)
...
T Consensus 84 ~~~ 86 (110)
T 3s8s_A 84 IKG 86 (110)
T ss_dssp STT
T ss_pred CCC
Confidence 754
No 30
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.84 E-value=3.3e-21 Score=135.96 Aligned_cols=83 Identities=24% Similarity=0.433 Sum_probs=75.3
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHhccC-ceEEEEEeecCC-CCceeEEEEEECCHHHHHHHHHHcC-CCeecCcEEEEeec
Q 024018 100 KTRLVAQNVPWTSTHEDIRALFEQHG-TVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLE-SYEFEGRTLKVNYA 176 (274)
Q Consensus 100 ~~~l~v~nLp~~~t~~~L~~~f~~~G-~v~~v~~~~~~~-~~~~g~afv~f~~~~~a~~a~~~l~-~~~~~g~~i~v~~~ 176 (274)
+++|||+|||+++|+++|+++|+.|| .|.+|++++++. |.++|||||+|.+.++|.+|++.++ +..++|+.|+|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 799999998874 8999999999999999999998774 56899999999999
Q ss_pred ccccCC
Q 024018 177 KIKKKN 182 (274)
Q Consensus 177 ~~~~~~ 182 (274)
.++...
T Consensus 81 ~~~~~~ 86 (91)
T 2lxi_A 81 DPKPKI 86 (91)
T ss_dssp CSCCCC
T ss_pred CCCCCC
Confidence 876543
No 31
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.83 E-value=3.9e-21 Score=136.38 Aligned_cols=81 Identities=14% Similarity=0.161 Sum_probs=75.4
Q ss_pred CCccceEEecCCccccHHHHHHHHhhcCCc--eEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCc----eeCCe
Q 024018 192 FATFNLFIANLSFEARAKDLREFFISEGWD--VVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK----VIMCL 265 (274)
Q Consensus 192 ~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~--v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~----~i~g~ 265 (274)
....+|||+|||+.+++++|+++|++ ||. |.+|++++|+.+|.++|||||+|.+.++|.+|++.|||. .|+||
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~-~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSP-YASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTT-TCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHh-hCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 34688999999999999999999999 894 678999999999999999999999999999999999997 58999
Q ss_pred EEEEEEee
Q 024018 266 VIALSYLY 273 (274)
Q Consensus 266 ~i~v~~a~ 273 (274)
+|.|+||+
T Consensus 86 ~i~V~~Ak 93 (95)
T 2lkz_A 86 TIGVDFAK 93 (95)
T ss_dssp EEEEEECC
T ss_pred EEEEEEcc
Confidence 99999996
No 32
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.83 E-value=3.2e-20 Score=136.87 Aligned_cols=87 Identities=22% Similarity=0.424 Sum_probs=80.9
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeec
Q 024018 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (274)
Q Consensus 97 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 176 (274)
....++|||+|||+++++++|+++|+.||.|..|.+..+.+|.++|||||+|.+.++|.+|++.|+|..++|+.|+|.++
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 34568899999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccccCCC
Q 024018 177 KIKKKNP 183 (274)
Q Consensus 177 ~~~~~~~ 183 (274)
.......
T Consensus 84 ~~~~~~~ 90 (116)
T 2fy1_A 84 KKPSFQS 90 (116)
T ss_dssp CCSSCSS
T ss_pred CCCCCCC
Confidence 8765543
No 33
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.83 E-value=3.3e-21 Score=146.03 Aligned_cols=121 Identities=19% Similarity=0.232 Sum_probs=79.4
Q ss_pred eEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeecccccCCCCCCCCCCCCCccceEEecCCccccHHHHHHHHhhcCCc
Q 024018 142 GLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWD 221 (274)
Q Consensus 142 g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~ 221 (274)
-++|++|.+...+..|+..++|....|+.- +.+.. ......+.++|||+|||..+++++|+++|+. ||.
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~~~---------~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~-~G~ 73 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRGS-MSYGR---------PPPDVEGMTSLKVDNLTYRTSPDTLRRVFEK-YGR 73 (135)
T ss_dssp -------------------------------CCSCC---------SCSSGGGCCCEEEECCCSSCHHHHHHHHHGG-GSC
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCCC-CCcCC---------CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCC
Confidence 367888899999999999988876666531 11111 1223344689999999999999999999999 999
Q ss_pred eEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEee
Q 024018 222 VVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSYLY 273 (274)
Q Consensus 222 v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a~ 273 (274)
|..+.++.+..+|.++|||||+|.+.++|.+|++.|||..+.|+.|+|.||+
T Consensus 74 i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~ 125 (135)
T 2lea_A 74 VGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 125 (135)
T ss_dssp CSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECC
T ss_pred EEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 9999999998889999999999999999999999999999999999999986
No 34
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=5.2e-20 Score=132.84 Aligned_cols=88 Identities=26% Similarity=0.407 Sum_probs=81.7
Q ss_pred ccCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEee
Q 024018 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (274)
Q Consensus 96 ~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 175 (274)
.....++|||+|||+.+++++|+++|+.||.|..+.+..+ +|.++|||||+|.+.++|.+|++.|+|..+.|+.|+|.+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 4457789999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred cccccCCCC
Q 024018 176 AKIKKKNPF 184 (274)
Q Consensus 176 ~~~~~~~~~ 184 (274)
+..+.....
T Consensus 90 a~~~~~~~~ 98 (103)
T 2d9p_A 90 AQRKEERQS 98 (103)
T ss_dssp CSSCCCCCC
T ss_pred ecccccCCC
Confidence 998766543
No 35
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.83 E-value=3.5e-20 Score=145.26 Aligned_cols=127 Identities=17% Similarity=0.295 Sum_probs=78.4
Q ss_pred EEECCHHHHHHHHHHcCCCeec--CcEEEEeecccccCCC-----------CCCCCCCCCCccceEEecCCccccHHHHH
Q 024018 146 VTMGSPDEATAALNNLESYEFE--GRTLKVNYAKIKKKNP-----------FPPVQPKPFATFNLFIANLSFEARAKDLR 212 (274)
Q Consensus 146 v~f~~~~~a~~a~~~l~~~~~~--g~~i~v~~~~~~~~~~-----------~~~~~~~~~~~~~l~V~nlp~~~~~~~l~ 212 (274)
.+|.+.++|+.|+..+++.... |+.....+........ ..+......+.++|||+|||..+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 6899999999999988886664 6666666543221100 11122234456789999999999999999
Q ss_pred HHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEee
Q 024018 213 EFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSYLY 273 (274)
Q Consensus 213 ~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a~ 273 (274)
++|+. ||.|..|.++.+..+|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.||+
T Consensus 91 ~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 150 (165)
T 1rk8_A 91 EKFCD-YGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCF 150 (165)
T ss_dssp HHHGG-GSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESE
T ss_pred HHhhc-CCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 99999 9999999999999899999999999999999999999999999999999999985
No 36
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.83 E-value=7.2e-20 Score=126.70 Aligned_cols=80 Identities=23% Similarity=0.418 Sum_probs=75.8
Q ss_pred CeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecC-CCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeecccc
Q 024018 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179 (274)
Q Consensus 101 ~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 179 (274)
.+|||+|||+++++++|+++|+.||.|.++.+..++ +|.++|||||+|.+.++|.+|++.|+|..++|+.|+|.++.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 579999999999999999999999999999999885 5899999999999999999999999999999999999999875
Q ss_pred c
Q 024018 180 K 180 (274)
Q Consensus 180 ~ 180 (274)
.
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 3
No 37
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.83 E-value=3.3e-20 Score=129.03 Aligned_cols=81 Identities=20% Similarity=0.277 Sum_probs=77.7
Q ss_pred CCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 024018 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271 (274)
Q Consensus 192 ~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~ 271 (274)
.+.++|||+|||..+++++|+++|++ ||.|.++.++.+..+|.++|||||+|.+.++|.+|++.|||..++|+.|+|+|
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIP-FGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGG-GSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhc-cCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45789999999999999999999999 99999999999988999999999999999999999999999999999999999
Q ss_pred ee
Q 024018 272 LY 273 (274)
Q Consensus 272 a~ 273 (274)
|+
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 86
No 38
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.83 E-value=6e-20 Score=128.27 Aligned_cols=81 Identities=21% Similarity=0.319 Sum_probs=75.2
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecC-CCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeecc
Q 024018 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (274)
Q Consensus 99 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 177 (274)
..++|||+|||.++++++|+++|+.||.|.++.+..++ +|.++|||||+|.+.++|.+|++.|+|..++|+.|+|.++.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 56789999999999999999999999999999999986 68999999999999999999999999999999999999997
Q ss_pred cc
Q 024018 178 IK 179 (274)
Q Consensus 178 ~~ 179 (274)
++
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 64
No 39
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.83 E-value=8.1e-20 Score=132.28 Aligned_cols=86 Identities=23% Similarity=0.322 Sum_probs=80.5
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecC---cEEEEe
Q 024018 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEG---RTLKVN 174 (274)
Q Consensus 98 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g---~~i~v~ 174 (274)
...++|||+|||+.+++++|+++|+.||.|..+.|..+++|.++|||||+|.+.++|.+|++.|+|..+.| +.|+|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 35788999999999999999999999999999999999899999999999999999999999999999998 999999
Q ss_pred ecccccCCC
Q 024018 175 YAKIKKKNP 183 (274)
Q Consensus 175 ~~~~~~~~~ 183 (274)
++..+....
T Consensus 93 ~a~~~~~~~ 101 (105)
T 2dnh_A 93 FADTDKESG 101 (105)
T ss_dssp ESCSSCCCS
T ss_pred ECccCcccC
Confidence 998876543
No 40
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=8.4e-20 Score=130.74 Aligned_cols=85 Identities=32% Similarity=0.541 Sum_probs=80.0
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecC-CCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeec
Q 024018 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (274)
Q Consensus 98 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 176 (274)
...++|||+|||+++++++|+++|+.||.|..+.+..++ +|.++|||||+|.+.++|.+|++.|+|..++|+.|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 466889999999999999999999999999999999987 6899999999999999999999999999999999999999
Q ss_pred ccccCC
Q 024018 177 KIKKKN 182 (274)
Q Consensus 177 ~~~~~~ 182 (274)
..+...
T Consensus 86 ~~~~~~ 91 (99)
T 1whw_A 86 TIKKEA 91 (99)
T ss_dssp CCCSTT
T ss_pred CCCccc
Confidence 987654
No 41
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.83 E-value=7.6e-20 Score=134.67 Aligned_cols=87 Identities=20% Similarity=0.358 Sum_probs=80.7
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecC-CCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEee
Q 024018 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (274)
Q Consensus 97 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 175 (274)
....++|||+|||+++++++|+++|+.||.|..|.|+.++ +|.++|||||+|.+.++|.+|++.|+|..++|+.|+|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3456889999999999999999999999999999999987 589999999999999999999999999999999999999
Q ss_pred cccccCCC
Q 024018 176 AKIKKKNP 183 (274)
Q Consensus 176 ~~~~~~~~ 183 (274)
+.++....
T Consensus 102 a~~~~~~~ 109 (115)
T 2cpz_A 102 KRSKNDSK 109 (115)
T ss_dssp CCCSCCCC
T ss_pred cCCCCcCC
Confidence 98876544
No 42
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.82 E-value=3.9e-20 Score=136.22 Aligned_cols=103 Identities=19% Similarity=0.291 Sum_probs=93.2
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeeccc
Q 024018 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178 (274)
Q Consensus 99 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 178 (274)
..++|||+|||+.+++++|+++|+.||.|..+.+..+ +.++|||||+|.+.++|.+|++.|||..++|+.|.|.++.+
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT--PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS--TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 5678999999999999999999999999999999865 45699999999999999999999999999999999999987
Q ss_pred ccCCCCCCCCCCCCCccceEEecCCccccHHHHHHHHhhcCCc
Q 024018 179 KKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWD 221 (274)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~ 221 (274)
.... .+++....+++|.++|+. ||.
T Consensus 85 ~~~~-----------------~~~~~~~~~~~l~~~~~~-~g~ 109 (115)
T 3lqv_A 85 NRAF-----------------QKMDTKKKEEQLKLLKEK-YGI 109 (115)
T ss_dssp HHHT-----------------TTSCHHHHHHHHHHHHHH-HCC
T ss_pred Chhh-----------------hhhhHhHhHHHHHHHHHH-hCC
Confidence 6543 467889999999999998 663
No 43
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.82 E-value=2.2e-19 Score=132.18 Aligned_cols=88 Identities=22% Similarity=0.360 Sum_probs=81.3
Q ss_pred ccCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecC-CCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEe
Q 024018 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174 (274)
Q Consensus 96 ~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 174 (274)
+....++|||+|||+.+++++|+++|+.||.|..|.|+.++ +|.++|||||+|.+.++|.+|++.|+|..++|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999986 69999999999999999999999999999999999999
Q ss_pred ecccccCCC
Q 024018 175 YAKIKKKNP 183 (274)
Q Consensus 175 ~~~~~~~~~ 183 (274)
++..+....
T Consensus 91 ~a~~~~~~~ 99 (115)
T 2dgo_A 91 WATRKPPAP 99 (115)
T ss_dssp ESSCCCCCS
T ss_pred EccCCCCCC
Confidence 998776543
No 44
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.82 E-value=6.1e-20 Score=130.42 Aligned_cols=82 Identities=18% Similarity=0.311 Sum_probs=77.4
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeec
Q 024018 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (274)
Q Consensus 97 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 176 (274)
....++|||+|||+.+++++|+++|+.||.|..|.+..+++|.++|||||+|.+.++|.+|++.|+|..++|+.|+|.++
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 34668899999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred cc
Q 024018 177 KI 178 (274)
Q Consensus 177 ~~ 178 (274)
+.
T Consensus 93 ~~ 94 (95)
T 2ywk_A 93 SS 94 (95)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 45
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.82 E-value=2.5e-20 Score=134.00 Aligned_cols=99 Identities=16% Similarity=0.209 Sum_probs=84.7
Q ss_pred CeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeeccccc
Q 024018 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180 (274)
Q Consensus 101 ~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~ 180 (274)
++|||+|||+++++++|+++|+.||.|..+.+..+ ++|||||+|.+.++|.+|++.|+|..++|+.|+|.++..+.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 47999999999999999999999999999999876 68999999999999999999999999999999999998876
Q ss_pred CCCCCC-CCCCCCCccceEEecCC
Q 024018 181 KNPFPP-VQPKPFATFNLFIANLS 203 (274)
Q Consensus 181 ~~~~~~-~~~~~~~~~~l~V~nlp 203 (274)
...... .........+|||+||+
T Consensus 77 ~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 77 RRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred CcccCCCCCccccCCCceecCCCC
Confidence 443221 12222336789999996
No 46
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.82 E-value=8.5e-20 Score=126.33 Aligned_cols=79 Identities=30% Similarity=0.488 Sum_probs=76.0
Q ss_pred ccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEee
Q 024018 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSYLY 273 (274)
Q Consensus 194 ~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a~ 273 (274)
+.+|||+|||..+++++|+++|+. ||.|.++.++.+..+|.++|||||+|.+.++|.+|++.|||..++|+.|+|+||+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~-~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 79 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKD-FPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 79 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTT-STTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecC
Confidence 367999999999999999999998 9999999999998899999999999999999999999999999999999999985
No 47
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=8.8e-20 Score=131.62 Aligned_cols=88 Identities=18% Similarity=0.399 Sum_probs=81.2
Q ss_pred ccCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecC-CCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEe
Q 024018 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174 (274)
Q Consensus 96 ~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 174 (274)
.....++|||+|||+++++++|+++|+.||.|..|.++.++ +|.++|||||+|.+.++|.+|++.|+|..++|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34567899999999999999999999999999999999986 58999999999999999999999999999999999999
Q ss_pred ecccccCCC
Q 024018 175 YAKIKKKNP 183 (274)
Q Consensus 175 ~~~~~~~~~ 183 (274)
++.++....
T Consensus 91 ~a~~~~~~~ 99 (103)
T 2cq0_A 91 WAKPSTNSG 99 (103)
T ss_dssp ESSCCCCSC
T ss_pred ECCCCCCCC
Confidence 998876543
No 48
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.82 E-value=6.5e-20 Score=135.64 Aligned_cols=82 Identities=22% Similarity=0.402 Sum_probs=76.2
Q ss_pred ccCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecC-CCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEe
Q 024018 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174 (274)
Q Consensus 96 ~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 174 (274)
.....++|||+|||+++++++|+++|+.||.|.++.++.++ +|+++|||||+|.+.++|.+|++.|||..++|+.|+|.
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999886 48999999999999999999999999999999999999
Q ss_pred ecc
Q 024018 175 YAK 177 (274)
Q Consensus 175 ~~~ 177 (274)
+++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 874
No 49
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.6e-19 Score=128.23 Aligned_cols=84 Identities=25% Similarity=0.307 Sum_probs=79.4
Q ss_pred CCCCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEE
Q 024018 189 PKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIA 268 (274)
Q Consensus 189 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~ 268 (274)
....+.++|||+|||..+++++|+++|+. ||.|.++.++.++.+|.++|||||+|.+.++|.+|++.|||..++|+.|+
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~-~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSK-YGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 88 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHT-TSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHh-cCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34456789999999999999999999998 99999999999999999999999999999999999999999999999999
Q ss_pred EEEee
Q 024018 269 LSYLY 273 (274)
Q Consensus 269 v~~a~ 273 (274)
|+||+
T Consensus 89 v~~a~ 93 (95)
T 2cqc_A 89 VSGPS 93 (95)
T ss_dssp EECCS
T ss_pred EEecC
Confidence 99985
No 50
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=9.9e-20 Score=129.07 Aligned_cols=83 Identities=24% Similarity=0.342 Sum_probs=78.7
Q ss_pred CCCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEE
Q 024018 190 KPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIAL 269 (274)
Q Consensus 190 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v 269 (274)
...+.++|||+|||..+++++|+++|+. ||.|.++.++.++.+|.++|||||+|.+.++|.+|++.|||..++|+.|+|
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~-~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 90 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSK-YGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKA 90 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTT-TSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHh-cCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 3455789999999999999999999998 999999999999988999999999999999999999999999999999999
Q ss_pred EEee
Q 024018 270 SYLY 273 (274)
Q Consensus 270 ~~a~ 273 (274)
+||+
T Consensus 91 ~~ak 94 (94)
T 2e5h_A 91 SIAI 94 (94)
T ss_dssp EECC
T ss_pred EecC
Confidence 9986
No 51
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2.1e-19 Score=129.66 Aligned_cols=87 Identities=29% Similarity=0.533 Sum_probs=79.7
Q ss_pred ccCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEee
Q 024018 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (274)
Q Consensus 96 ~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 175 (274)
.....++|||+|||+++++++|+++|+.||.|..|.|..+..+ ++|||||+|.+.++|.+|++.|+|..++|+.|+|.+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT-TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC-CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3446789999999999999999999999999999999988665 899999999999999999999999999999999999
Q ss_pred cccccCCC
Q 024018 176 AKIKKKNP 183 (274)
Q Consensus 176 ~~~~~~~~ 183 (274)
+..+....
T Consensus 90 a~~~~~~~ 97 (103)
T 2cq3_A 90 ATARVMTN 97 (103)
T ss_dssp CCSSCCCC
T ss_pred cccCCCCC
Confidence 98876544
No 52
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4.5e-20 Score=132.99 Aligned_cols=82 Identities=18% Similarity=0.325 Sum_probs=76.9
Q ss_pred ccCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEee
Q 024018 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (274)
Q Consensus 96 ~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 175 (274)
.+...++|||+|||+++|+++|+++|+.||.|.+|.|++++.|.++|||||+|.+.++|.+|+. ++|..++|+.|.|.+
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILF 85 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEE
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 3445688999999999999999999999999999999998889999999999999999999999 899999999999999
Q ss_pred ccc
Q 024018 176 AKI 178 (274)
Q Consensus 176 ~~~ 178 (274)
+..
T Consensus 86 ~~~ 88 (103)
T 1s79_A 86 KDD 88 (103)
T ss_dssp HHH
T ss_pred chH
Confidence 875
No 53
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.82 E-value=9.5e-20 Score=127.23 Aligned_cols=80 Identities=29% Similarity=0.361 Sum_probs=76.6
Q ss_pred CccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 024018 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSYL 272 (274)
Q Consensus 193 ~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a 272 (274)
+.++|||+|||..+++++|+++|+. ||.|.++.++.+..+|.++|||||+|.+.++|.+|++.|||..++|+.|+|+||
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAP-FGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHh-cCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 4689999999999999999999998 999999999999888999999999999999999999999999999999999998
Q ss_pred e
Q 024018 273 Y 273 (274)
Q Consensus 273 ~ 273 (274)
+
T Consensus 84 ~ 84 (87)
T 3bs9_A 84 T 84 (87)
T ss_dssp C
T ss_pred C
Confidence 5
No 54
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1.6e-19 Score=128.18 Aligned_cols=85 Identities=25% Similarity=0.462 Sum_probs=79.4
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCC-CCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeecc
Q 024018 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (274)
Q Consensus 99 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~-~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 177 (274)
..++|||+|||..+++++|+++|+.||.|..+.+..++. |+++|||||+|.+.++|.+|++.|+|..++|+.|+|.++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 567899999999999999999999999999999999874 8999999999999999999999999999999999999998
Q ss_pred cccCCC
Q 024018 178 IKKKNP 183 (274)
Q Consensus 178 ~~~~~~ 183 (274)
.+....
T Consensus 84 ~~~~~~ 89 (95)
T 2dnz_A 84 ERLDGG 89 (95)
T ss_dssp CCCCCC
T ss_pred cccCCC
Confidence 876543
No 55
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.9e-19 Score=129.82 Aligned_cols=87 Identities=23% Similarity=0.289 Sum_probs=79.1
Q ss_pred ccCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEee
Q 024018 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (274)
Q Consensus 96 ~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 175 (274)
.....++|||+|||+.+++++|+++|+.||.|..|.|..++.+ ++|||||+|.+.++|.+|++.|+|..+.|+.|+|.+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS-NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS-SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC-CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 3456789999999999999999999999999999999988654 689999999999999999999999999999999999
Q ss_pred cccccCCC
Q 024018 176 AKIKKKNP 183 (274)
Q Consensus 176 ~~~~~~~~ 183 (274)
+..+....
T Consensus 90 a~~~~~~~ 97 (103)
T 2cqi_A 90 ATTPSSQK 97 (103)
T ss_dssp CCCTTCCC
T ss_pred CCCCcccc
Confidence 98865543
No 56
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.82 E-value=5.8e-21 Score=134.67 Aligned_cols=79 Identities=19% Similarity=0.220 Sum_probs=73.6
Q ss_pred ccceEEecCCccccHHHHHHHHhhcCC-ceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhC-CceeCCeEEEEEE
Q 024018 194 TFNLFIANLSFEARAKDLREFFISEGW-DVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ-GKVIMCLVIALSY 271 (274)
Q Consensus 194 ~~~l~V~nlp~~~~~~~l~~~f~~~~G-~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~-g~~i~g~~i~v~~ 271 (274)
+++|||+|||..+++++|+++|+. || .|.+|++++++.+|.++|||||+|.+.++|.+|++.++ +..++|++|+|+|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~-~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~ 79 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQS-HGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHY 79 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHH-HTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHH-hCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEE
Confidence 368999999999999999999999 88 89999999999999999999999999999999999874 5679999999999
Q ss_pred ee
Q 024018 272 LY 273 (274)
Q Consensus 272 a~ 273 (274)
|+
T Consensus 80 a~ 81 (91)
T 2lxi_A 80 SD 81 (91)
T ss_dssp CC
T ss_pred cC
Confidence 84
No 57
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.82 E-value=7.8e-20 Score=127.11 Aligned_cols=80 Identities=30% Similarity=0.493 Sum_probs=75.4
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecC-CCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeec
Q 024018 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (274)
Q Consensus 98 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 176 (274)
...++|||+|||+++++++|+++|+.||.|..+.++.++ +|.++|||||+|.+.++|.+|++.|+|..++|+.|+|.++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 467889999999999999999999999999999998884 5889999999999999999999999999999999999997
Q ss_pred c
Q 024018 177 K 177 (274)
Q Consensus 177 ~ 177 (274)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 58
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.82 E-value=1.6e-20 Score=132.20 Aligned_cols=82 Identities=22% Similarity=0.391 Sum_probs=71.1
Q ss_pred CeEEEeCCCCCCCHHHHHHHHhccC--ceEEEEEeecC-CCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeecc
Q 024018 101 TRLVAQNVPWTSTHEDIRALFEQHG--TVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (274)
Q Consensus 101 ~~l~v~nLp~~~t~~~L~~~f~~~G--~v~~v~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 177 (274)
.+|||+|||+++++++|+++|+.|| .|.++.++.++ +|+++|||||+|.+.++|.+|++.|||..++|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999987 59999999999999999999999999999999999999998
Q ss_pred cccCC
Q 024018 178 IKKKN 182 (274)
Q Consensus 178 ~~~~~ 182 (274)
+....
T Consensus 82 ~~~~~ 86 (90)
T 3p5t_L 82 KLEHH 86 (90)
T ss_dssp -----
T ss_pred CCccc
Confidence 76543
No 59
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.6e-19 Score=129.27 Aligned_cols=86 Identities=19% Similarity=0.434 Sum_probs=79.3
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecC-CCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEee
Q 024018 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (274)
Q Consensus 97 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 175 (274)
....++|||+|||..+++++|+++|+.||.|..+.++.++ +|.++|||||+|.+.++|.+|++ |++..++|+.|+|.+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 3466889999999999999999999999999999999886 48999999999999999999999 899999999999999
Q ss_pred cccccCCC
Q 024018 176 AKIKKKNP 183 (274)
Q Consensus 176 ~~~~~~~~ 183 (274)
+.++....
T Consensus 86 a~~~~~~~ 93 (99)
T 2dgs_A 86 AEPRDSKS 93 (99)
T ss_dssp CCCCCCCC
T ss_pred CCCCcccC
Confidence 99876544
No 60
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.5e-19 Score=130.89 Aligned_cols=87 Identities=20% Similarity=0.317 Sum_probs=80.7
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecC-CCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEee
Q 024018 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (274)
Q Consensus 97 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 175 (274)
....++|||+|||+.+++++|+++|+.||.|..|.+..++ +|.++|||||+|.+.++|.+|++.|+|..++|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 3466889999999999999999999999999999999987 589999999999999999999999999999999999999
Q ss_pred cccccCCC
Q 024018 176 AKIKKKNP 183 (274)
Q Consensus 176 ~~~~~~~~ 183 (274)
+..+....
T Consensus 92 a~~~~~~~ 99 (105)
T 1x5u_A 92 ASAHNKNL 99 (105)
T ss_dssp TTTTSCCC
T ss_pred CCCCCcCC
Confidence 98876543
No 61
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.5e-19 Score=131.28 Aligned_cols=88 Identities=24% Similarity=0.486 Sum_probs=80.8
Q ss_pred ccCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecC--CCCceeEEEEEECCHHHHHHHHHHc-CCCeecCcEEE
Q 024018 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS--KNRNRGLAFVTMGSPDEATAALNNL-ESYEFEGRTLK 172 (274)
Q Consensus 96 ~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~--~~~~~g~afv~f~~~~~a~~a~~~l-~~~~~~g~~i~ 172 (274)
.....++|||+|||+.+++++|+++|+.||.|..|.|+.+. +|.++|||||+|.+.++|.+|++.| +|..+.|+.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 34567889999999999999999999999999999999883 6899999999999999999999999 99999999999
Q ss_pred EeecccccCCC
Q 024018 173 VNYAKIKKKNP 183 (274)
Q Consensus 173 v~~~~~~~~~~ 183 (274)
|.++..+....
T Consensus 91 v~~a~~~~~~~ 101 (107)
T 2cph_A 91 LEWADSEVTVQ 101 (107)
T ss_dssp EEECCCCCCCC
T ss_pred EEeCCCCCCCC
Confidence 99998876543
No 62
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.81 E-value=2.1e-20 Score=132.54 Aligned_cols=82 Identities=26% Similarity=0.421 Sum_probs=74.5
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhccCc--eEEEEEeecCC-CCceeEEEEEECCHHHHHHHHHHcCCC----eecCc
Q 024018 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGT--VLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESY----EFEGR 169 (274)
Q Consensus 97 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~--v~~v~~~~~~~-~~~~g~afv~f~~~~~a~~a~~~l~~~----~~~g~ 169 (274)
...-.+|||+|||+.+|+++|+++|++||. |.+|++++|+. |+++|||||+|.+.++|.+|++.|||. .++||
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 345578999999999999999999999995 67899999874 999999999999999999999999986 58999
Q ss_pred EEEEeeccc
Q 024018 170 TLKVNYAKI 178 (274)
Q Consensus 170 ~i~v~~~~~ 178 (274)
+|.|.||+.
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999874
No 63
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1.9e-19 Score=128.60 Aligned_cols=85 Identities=22% Similarity=0.442 Sum_probs=78.3
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCC--C--CceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEe
Q 024018 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--N--RNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174 (274)
Q Consensus 99 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~--~--~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 174 (274)
+.++|||+|||+++++++|+++|+.||.|..+.+..++. | .++|||||+|.+.++|.+|++.|+|..++|+.|+|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 567899999999999999999999999999999998764 4 889999999999999999999999999999999999
Q ss_pred ecccccCCC
Q 024018 175 YAKIKKKNP 183 (274)
Q Consensus 175 ~~~~~~~~~ 183 (274)
++..+....
T Consensus 84 ~a~~~~~~~ 92 (98)
T 2cpf_A 84 ISERATKPA 92 (98)
T ss_dssp CSSCSSCCC
T ss_pred EccCCCCCC
Confidence 998776543
No 64
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.81 E-value=9.3e-20 Score=129.80 Aligned_cols=80 Identities=14% Similarity=0.374 Sum_probs=76.8
Q ss_pred CccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 024018 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSYL 272 (274)
Q Consensus 193 ~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a 272 (274)
++++|||+|||..+++++|+++|+. ||.|.++.++.+..+|.++|||||+|.+.++|.+|++.|+|..++|+.|+|.||
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 79 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSN-VGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYS 79 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHT-TSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHh-cCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEc
Confidence 3678999999999999999999998 999999999999889999999999999999999999999999999999999998
Q ss_pred e
Q 024018 273 Y 273 (274)
Q Consensus 273 ~ 273 (274)
+
T Consensus 80 ~ 80 (96)
T 2x1f_A 80 S 80 (96)
T ss_dssp S
T ss_pred C
Confidence 5
No 65
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.81 E-value=1.3e-19 Score=129.05 Aligned_cols=82 Identities=23% Similarity=0.481 Sum_probs=77.3
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecC-CCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeeccc
Q 024018 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178 (274)
Q Consensus 100 ~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 178 (274)
.++|||+|||.++++++|+++|+.||.|.++.+..++ +|.++|||||+|.+.++|.+|++.|+|..++|+.|+|.++..
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 5789999999999999999999999999999999886 489999999999999999999999999999999999999987
Q ss_pred ccC
Q 024018 179 KKK 181 (274)
Q Consensus 179 ~~~ 181 (274)
+..
T Consensus 82 ~~~ 84 (96)
T 2x1f_A 82 SDI 84 (96)
T ss_dssp SSG
T ss_pred CCC
Confidence 654
No 66
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.3e-19 Score=129.01 Aligned_cols=85 Identities=19% Similarity=0.304 Sum_probs=79.0
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCceEEE-EEeecC-CCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeec
Q 024018 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDI-ELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (274)
Q Consensus 99 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v-~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 176 (274)
..++|||+|||+++++++|+++|+.||.|..+ .++.++ +|.++|||||+|.+.++|.+|++.|+|..++|+.|+|.++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 56789999999999999999999999999999 999884 6899999999999999999999999999999999999999
Q ss_pred ccccCCC
Q 024018 177 KIKKKNP 183 (274)
Q Consensus 177 ~~~~~~~ 183 (274)
.++....
T Consensus 84 ~~~~~~~ 90 (96)
T 1x5t_A 84 FKKDSKG 90 (96)
T ss_dssp CCCCCCC
T ss_pred cccCCCC
Confidence 8776543
No 67
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1e-19 Score=131.08 Aligned_cols=86 Identities=28% Similarity=0.446 Sum_probs=79.8
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecC-CCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeec
Q 024018 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (274)
Q Consensus 98 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 176 (274)
...++|||+|||+.+++++|+++|+.||.|..|.++.++ +|.++|||||+|.+.++|.+|++.|+|..++|+.|+|.++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 466889999999999999999999999999999998885 4899999999999999999999999999999999999999
Q ss_pred ccccCCC
Q 024018 177 KIKKKNP 183 (274)
Q Consensus 177 ~~~~~~~ 183 (274)
.++....
T Consensus 90 ~~~~~~~ 96 (102)
T 2cqb_A 90 KPMRIKE 96 (102)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 8876554
No 68
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.8e-19 Score=130.67 Aligned_cols=83 Identities=23% Similarity=0.374 Sum_probs=78.1
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCC-CCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeec
Q 024018 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (274)
Q Consensus 98 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~-~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 176 (274)
...++|||+|||+.+++++|+++|+.||.|..|.+..++. |.++|||||+|.+.++|.+|++.|+|..++|+.|+|.++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 3567899999999999999999999999999999999875 899999999999999999999999999999999999999
Q ss_pred cccc
Q 024018 177 KIKK 180 (274)
Q Consensus 177 ~~~~ 180 (274)
..+.
T Consensus 101 ~~~~ 104 (106)
T 1p27_B 101 FVRG 104 (106)
T ss_dssp EESS
T ss_pred cCCC
Confidence 8764
No 69
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.81 E-value=1.3e-19 Score=129.78 Aligned_cols=83 Identities=18% Similarity=0.212 Sum_probs=78.6
Q ss_pred CCCCccceEEecCCccccHHHHHHHHhhcCCceEE--------EEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCce
Q 024018 190 KPFATFNLFIANLSFEARAKDLREFFISEGWDVVS--------AEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKV 261 (274)
Q Consensus 190 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~--------~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~ 261 (274)
...+.++|||+|||..+++++|+++|++ ||.|.+ +.++.++.+|.++|||||+|.+.++|.+|++.|||..
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQ-IGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTT-TSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHH-hCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 3455789999999999999999999998 999999 9999999999999999999999999999999999999
Q ss_pred eCCeEEEEEEee
Q 024018 262 IMCLVIALSYLY 273 (274)
Q Consensus 262 i~g~~i~v~~a~ 273 (274)
++|+.|+|+||+
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999999985
No 70
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=4.6e-19 Score=130.22 Aligned_cols=86 Identities=15% Similarity=0.258 Sum_probs=79.7
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeec
Q 024018 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (274)
Q Consensus 97 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 176 (274)
....++|||+|||+++++++|+++|+.||.|..|.|..+++|.++|||||+|.+.++|.+|++.|+|..++|+.|+|.++
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 34568899999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccccCC
Q 024018 177 KIKKKN 182 (274)
Q Consensus 177 ~~~~~~ 182 (274)
......
T Consensus 92 ~~~~~~ 97 (114)
T 2do0_A 92 ERALPK 97 (114)
T ss_dssp SCCCCC
T ss_pred ccCCCC
Confidence 765433
No 71
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.8e-19 Score=127.95 Aligned_cols=82 Identities=24% Similarity=0.424 Sum_probs=76.7
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCC-CCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEee
Q 024018 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (274)
Q Consensus 97 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~-~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 175 (274)
....++|||+|||+.+++++|+++|+.||.|..+.+..++. |.++|||||+|.+.++|.+|++.|+|..++|+.|+|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 34567899999999999999999999999999999999875 89999999999999999999999999999999999999
Q ss_pred ccc
Q 024018 176 AKI 178 (274)
Q Consensus 176 ~~~ 178 (274)
++.
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 864
No 72
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.81 E-value=1.4e-19 Score=131.79 Aligned_cols=83 Identities=29% Similarity=0.524 Sum_probs=77.7
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecC-CCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeec
Q 024018 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (274)
Q Consensus 98 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 176 (274)
...++|||+|||+.+++++|+++|+.||.|..+.++.++ +|.++|||||+|.+.++|.+|++.|+|..++|+.|+|.++
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 103 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHV 103 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 356789999999999999999999999999999999886 4899999999999999999999999999999999999999
Q ss_pred cccc
Q 024018 177 KIKK 180 (274)
Q Consensus 177 ~~~~ 180 (274)
.++.
T Consensus 104 ~~k~ 107 (108)
T 2jrs_A 104 TERT 107 (108)
T ss_dssp CSSC
T ss_pred ccCC
Confidence 8764
No 73
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.9e-19 Score=127.64 Aligned_cols=80 Identities=23% Similarity=0.442 Sum_probs=75.5
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCC-CCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeec
Q 024018 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (274)
Q Consensus 98 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~-~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 176 (274)
...++|||+|||+.+++++|+++|+.||.|..+.+..++. |.++|||||+|.+.++|.+|++.|+|..++|+.|+|.++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 3567899999999999999999999999999999998875 889999999999999999999999999999999999997
Q ss_pred c
Q 024018 177 K 177 (274)
Q Consensus 177 ~ 177 (274)
+
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 4
No 74
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.3e-19 Score=130.68 Aligned_cols=87 Identities=24% Similarity=0.436 Sum_probs=80.3
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCC-CCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEee
Q 024018 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (274)
Q Consensus 97 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~-~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 175 (274)
....++|||+|||+++++++|+++|+.||.|..+.+..++. |.++|||||+|.+.++|.+|++.|+|..++|+.|+|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 34678999999999999999999999999999999998875 89999999999999999999999999999999999999
Q ss_pred cccccCCC
Q 024018 176 AKIKKKNP 183 (274)
Q Consensus 176 ~~~~~~~~ 183 (274)
+.......
T Consensus 90 a~~~~~~~ 97 (103)
T 2dnm_A 90 ARYGRRDL 97 (103)
T ss_dssp CSSCCSCC
T ss_pred CCcCCCCC
Confidence 98765543
No 75
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.6e-19 Score=129.96 Aligned_cols=87 Identities=20% Similarity=0.426 Sum_probs=80.0
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecC-CCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEee
Q 024018 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (274)
Q Consensus 97 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 175 (274)
....++|||+|||+++++++|+++|+.||.|..+.++.++ ++.++|||||+|.+.++|.+|++.|||..++|+.|+|.+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3366889999999999999999999999999999999886 488999999999999999999999999999999999999
Q ss_pred cccccCCC
Q 024018 176 AKIKKKNP 183 (274)
Q Consensus 176 ~~~~~~~~ 183 (274)
+..+....
T Consensus 89 a~~~~~~~ 96 (102)
T 1x5s_A 89 AGKSSDNR 96 (102)
T ss_dssp EECCCCCC
T ss_pred CCCCCCCC
Confidence 98876543
No 76
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.81 E-value=7.3e-20 Score=131.35 Aligned_cols=80 Identities=20% Similarity=0.252 Sum_probs=76.8
Q ss_pred CccceEEecCCc------cccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCC-e
Q 024018 193 ATFNLFIANLSF------EARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC-L 265 (274)
Q Consensus 193 ~~~~l~V~nlp~------~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g-~ 265 (274)
..++|||+|||. .+++++|+++|++ ||.|.++.++.+..+|.++|||||+|.+.++|.+|++.|||..++| +
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~-~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSK-AGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHT-TSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHh-cCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 368899999999 9999999999999 9999999999999999999999999999999999999999999999 9
Q ss_pred EEEEEEee
Q 024018 266 VIALSYLY 273 (274)
Q Consensus 266 ~i~v~~a~ 273 (274)
.|+|.+|.
T Consensus 84 ~l~V~~a~ 91 (100)
T 3ns6_A 84 RLFLYTMK 91 (100)
T ss_dssp BCEEEESH
T ss_pred EEEEEECc
Confidence 99999974
No 77
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.2e-19 Score=130.25 Aligned_cols=82 Identities=15% Similarity=0.267 Sum_probs=73.7
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcC--CCeecCcEEEEe
Q 024018 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLE--SYEFEGRTLKVN 174 (274)
Q Consensus 97 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~--~~~~~g~~i~v~ 174 (274)
....++|||+|||+++++++|+++|++||.|.+|.|+++ +|||||+|.+.++|.+|++.|+ +..+.|++|+|.
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 335678999999999999999999999999999999875 8999999999999999999876 478999999999
Q ss_pred ecccccCCC
Q 024018 175 YAKIKKKNP 183 (274)
Q Consensus 175 ~~~~~~~~~ 183 (274)
+++.+....
T Consensus 88 ~A~~~~~~~ 96 (105)
T 1sjq_A 88 FSNHKELKT 96 (105)
T ss_dssp CCSSSSCCC
T ss_pred EcCCCCCCc
Confidence 998765543
No 78
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=3.6e-19 Score=130.09 Aligned_cols=87 Identities=20% Similarity=0.393 Sum_probs=80.2
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCC-CCceeEEEEEECCHHHHHHHHHHcC------CCeecCc
Q 024018 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLE------SYEFEGR 169 (274)
Q Consensus 97 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~-~~~~g~afv~f~~~~~a~~a~~~l~------~~~~~g~ 169 (274)
....++|||+|||+++++++|+++|+.||.|..|.|+.++. |.++|||||+|.+.++|.+|++.|+ |..++|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 34668899999999999999999999999999999998874 8999999999999999999999999 9999999
Q ss_pred EEEEeecccccCCC
Q 024018 170 TLKVNYAKIKKKNP 183 (274)
Q Consensus 170 ~i~v~~~~~~~~~~ 183 (274)
.|+|.++.++....
T Consensus 92 ~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 92 QLKVDLAVTRDEAA 105 (111)
T ss_dssp EEEEECCCCCCCCC
T ss_pred EEEEEECCCCccCC
Confidence 99999998876543
No 79
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.80 E-value=2.1e-19 Score=139.23 Aligned_cols=82 Identities=16% Similarity=0.317 Sum_probs=75.9
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHhccC--ceEEEEEeecC-CCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEe
Q 024018 98 YSKTRLVAQNVPWTSTHEDIRALFEQHG--TVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174 (274)
Q Consensus 98 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G--~v~~v~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 174 (274)
...++|||+|||+++++++|+++|+.|| .|.+|.++.|+ +|+++|||||+|.+.++|.+|++.|+|..|+|+.|+|.
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 3568999999999999999999999999 99999999996 59999999999999999999999999999999999999
Q ss_pred ecccc
Q 024018 175 YAKIK 179 (274)
Q Consensus 175 ~~~~~ 179 (274)
++.++
T Consensus 133 ~a~~~ 137 (156)
T 3n9u_C 133 PATRQ 137 (156)
T ss_dssp ECCHH
T ss_pred EcCCC
Confidence 99765
No 80
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=3.3e-19 Score=128.83 Aligned_cols=86 Identities=12% Similarity=0.128 Sum_probs=80.2
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHhc-cCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCe-ecCcEEEEee
Q 024018 98 YSKTRLVAQNVPWTSTHEDIRALFEQ-HGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYE-FEGRTLKVNY 175 (274)
Q Consensus 98 ~~~~~l~v~nLp~~~t~~~L~~~f~~-~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~g~~i~v~~ 175 (274)
...++|||+|||+++++++|+++|+. ||.|..+.++.+++|.++|||||+|.+.++|.+|++.|+|.. ++|+.|+|.+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~ 86 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSV 86 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCB
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEE
Confidence 35678999999999999999999999 999999999999899999999999999999999999999999 9999999999
Q ss_pred cccccCCC
Q 024018 176 AKIKKKNP 183 (274)
Q Consensus 176 ~~~~~~~~ 183 (274)
+..+....
T Consensus 87 a~~~~~~~ 94 (104)
T 2dhg_A 87 AIPKASRV 94 (104)
T ss_dssp CCCCCSCC
T ss_pred ccCCCcCC
Confidence 98765543
No 81
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=2.1e-19 Score=127.67 Aligned_cols=80 Identities=20% Similarity=0.358 Sum_probs=77.1
Q ss_pred CccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 024018 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSYL 272 (274)
Q Consensus 193 ~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a 272 (274)
+.++|||+|||..+++++|+++|+. ||.|.++.++.+..+|.++|||||+|.+.++|.+|++.|||..++|+.|+|+||
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~-~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEP-FGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTT-TSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHh-cCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 4689999999999999999999998 999999999999989999999999999999999999999999999999999998
Q ss_pred e
Q 024018 273 Y 273 (274)
Q Consensus 273 ~ 273 (274)
+
T Consensus 83 ~ 83 (95)
T 2dnz_A 83 T 83 (95)
T ss_dssp S
T ss_pred c
Confidence 5
No 82
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.80 E-value=4.4e-20 Score=132.50 Aligned_cols=82 Identities=20% Similarity=0.379 Sum_probs=77.3
Q ss_pred CCCeEEEeCCCC------CCCHHHHHHHHhccCceEEEEEeecCC-CCceeEEEEEECCHHHHHHHHHHcCCCeecC-cE
Q 024018 99 SKTRLVAQNVPW------TSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYEFEG-RT 170 (274)
Q Consensus 99 ~~~~l~v~nLp~------~~t~~~L~~~f~~~G~v~~v~~~~~~~-~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g-~~ 170 (274)
..++|||+|||. .+++++|+++|++||.|.++.|+.++. |+++|||||+|.+.++|.+|++.|||..++| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 457899999999 999999999999999999999999986 9999999999999999999999999999999 99
Q ss_pred EEEeeccccc
Q 024018 171 LKVNYAKIKK 180 (274)
Q Consensus 171 i~v~~~~~~~ 180 (274)
|+|.++.++.
T Consensus 85 l~V~~a~~~~ 94 (100)
T 3ns6_A 85 LFLYTMKDVE 94 (100)
T ss_dssp CEEEESHHHH
T ss_pred EEEEECchhh
Confidence 9999998653
No 83
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.80 E-value=2.6e-19 Score=130.69 Aligned_cols=85 Identities=21% Similarity=0.328 Sum_probs=78.9
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecC-CCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEee
Q 024018 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (274)
Q Consensus 97 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 175 (274)
....++|||+|||+.+++++|+++|+.||.|..+.+..++ +|.++|||||+|.+.++|.+|+..|+|..++|+.|+|.+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3456889999999999999999999999999999998886 589999999999999999999999999999999999999
Q ss_pred cccccC
Q 024018 176 AKIKKK 181 (274)
Q Consensus 176 ~~~~~~ 181 (274)
+..+..
T Consensus 103 a~~~~~ 108 (110)
T 1oo0_B 103 CFVKGP 108 (110)
T ss_dssp SEESSC
T ss_pred cccCCC
Confidence 987654
No 84
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=2.7e-19 Score=128.11 Aligned_cols=81 Identities=20% Similarity=0.286 Sum_probs=77.5
Q ss_pred CCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 024018 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271 (274)
Q Consensus 192 ~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~ 271 (274)
.+.++|||+|||..+++++|+++|+. ||.|.++.++.+..+|.++|||||+|.+.++|.+|++.|||..++|+.|+|.|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSA-YGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHT-TSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 44789999999999999999999998 99999999999988899999999999999999999999999999999999999
Q ss_pred ee
Q 024018 272 LY 273 (274)
Q Consensus 272 a~ 273 (274)
|+
T Consensus 85 a~ 86 (99)
T 1whw_A 85 ST 86 (99)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 85
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.80 E-value=2.2e-19 Score=127.57 Aligned_cols=78 Identities=14% Similarity=0.146 Sum_probs=71.2
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCe--ecCcEEEEe
Q 024018 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYE--FEGRTLKVN 174 (274)
Q Consensus 97 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~--~~g~~i~v~ 174 (274)
..+.++|||+|||+++|+++|+++|++||.|.++.+++. +|+|||+|.+.++|.+|++.|+|.. ++|++|+|.
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~-----kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~ 92 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK-----KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVN 92 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEE
Confidence 346688999999999999999999999999999999854 8999999999999999999999865 789999999
Q ss_pred ecccc
Q 024018 175 YAKIK 179 (274)
Q Consensus 175 ~~~~~ 179 (274)
+++.+
T Consensus 93 ~S~~k 97 (100)
T 3r27_A 93 YSTSQ 97 (100)
T ss_dssp ECSCS
T ss_pred ecccc
Confidence 99865
No 86
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.80 E-value=4.2e-20 Score=130.02 Aligned_cols=78 Identities=17% Similarity=0.209 Sum_probs=72.3
Q ss_pred cceEEecCCccccHHHHHHHHhhcCC--ceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 024018 195 FNLFIANLSFEARAKDLREFFISEGW--DVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSYL 272 (274)
Q Consensus 195 ~~l~V~nlp~~~~~~~l~~~f~~~~G--~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a 272 (274)
.+|||+|||..+++++|+++|+. || .|.++.++.+..+|.++|||||+|.+.++|.+|++.|||..++|+.|+|.++
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~-~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~ 80 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHS-LGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPS 80 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHT-TTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHH-hCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEEC
Confidence 47999999999999999999998 99 9999999999999999999999999999999999999999999999999987
Q ss_pred e
Q 024018 273 Y 273 (274)
Q Consensus 273 ~ 273 (274)
.
T Consensus 81 ~ 81 (90)
T 3p5t_L 81 N 81 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 87
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.80 E-value=1.7e-19 Score=133.36 Aligned_cols=83 Identities=29% Similarity=0.340 Sum_probs=78.0
Q ss_pred CCCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEE
Q 024018 190 KPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIAL 269 (274)
Q Consensus 190 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v 269 (274)
...+.++|||+|||..+++++|+++|++ ||.|.++.++.++.+|.++|||||+|.+.++|.+|++.|||..++|+.|+|
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLP-FGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTT-SCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 3445789999999999999999999998 999999999999889999999999999999999999999999999999999
Q ss_pred EEee
Q 024018 270 SYLY 273 (274)
Q Consensus 270 ~~a~ 273 (274)
+|+|
T Consensus 115 ~~ak 118 (118)
T 2khc_A 115 QLKK 118 (118)
T ss_dssp EEC-
T ss_pred EecC
Confidence 9986
No 88
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.80 E-value=5.1e-19 Score=123.53 Aligned_cols=80 Identities=20% Similarity=0.508 Sum_probs=74.1
Q ss_pred ccCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCC-CCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEe
Q 024018 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174 (274)
Q Consensus 96 ~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~-~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 174 (274)
.+...++|||+|||+++++++|+++|+.||.|..+.++.++. |+++|||||+|.+.++|.+|++ +++..++|+.|.|+
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 445778999999999999999999999999999999999874 9999999999999999999997 58889999999998
Q ss_pred ec
Q 024018 175 YA 176 (274)
Q Consensus 175 ~~ 176 (274)
+|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 89
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.80 E-value=3.1e-19 Score=127.77 Aligned_cols=79 Identities=27% Similarity=0.425 Sum_probs=74.7
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCceEE--------EEEeecC-CCCceeEEEEEECCHHHHHHHHHHcCCCeecCc
Q 024018 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLD--------IELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGR 169 (274)
Q Consensus 99 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~--------v~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~ 169 (274)
..++|||+|||+++++++|+++|+.||.|.. +.+..++ +|+++|||||+|.+.++|.+|++.|+|..++|+
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~ 91 (99)
T 2la6_A 12 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGN 91 (99)
T ss_dssp CCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 5678999999999999999999999999999 9999986 589999999999999999999999999999999
Q ss_pred EEEEeecc
Q 024018 170 TLKVNYAK 177 (274)
Q Consensus 170 ~i~v~~~~ 177 (274)
.|+|.+++
T Consensus 92 ~l~V~~A~ 99 (99)
T 2la6_A 92 PIKVSFAT 99 (99)
T ss_dssp BCEEEECC
T ss_pred EEEEEecC
Confidence 99999874
No 90
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.80 E-value=2.7e-19 Score=125.15 Aligned_cols=82 Identities=20% Similarity=0.366 Sum_probs=75.8
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCC-C-CceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeec
Q 024018 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-N-RNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (274)
Q Consensus 99 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~-~-~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 176 (274)
..++|||+|||+++++++|+++|+.||.|..+.+..+.. + +++|||||+|.+.++|.+|++.|||..++|+.|+|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 467899999999999999999999999999999988874 3 48999999999999999999999999999999999999
Q ss_pred cccc
Q 024018 177 KIKK 180 (274)
Q Consensus 177 ~~~~ 180 (274)
.+..
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 91
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.80 E-value=2.1e-19 Score=126.03 Aligned_cols=80 Identities=21% Similarity=0.411 Sum_probs=75.7
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecC-CCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeecc
Q 024018 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (274)
Q Consensus 99 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 177 (274)
+.++|||+|||+++++++|+++|+.||.|..+.+..++ +|.++|||||+|.+.++|.+|+ .|+|..++|+.|+|.+++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 46789999999999999999999999999999999986 6899999999999999999999 799999999999999997
Q ss_pred cc
Q 024018 178 IK 179 (274)
Q Consensus 178 ~~ 179 (274)
..
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 92
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.80 E-value=1.9e-19 Score=123.59 Aligned_cols=73 Identities=21% Similarity=0.303 Sum_probs=69.1
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeecc
Q 024018 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (274)
Q Consensus 100 ~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 177 (274)
+.-|||+||++.+|+++|+++|.+||+|.++.+.. ++|||||+|.+.++|++|++.|||..++||+|+|+++.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 45699999999999999999999999999999975 59999999999999999999999999999999999984
No 93
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.80 E-value=4.5e-19 Score=128.73 Aligned_cols=80 Identities=20% Similarity=0.376 Sum_probs=76.6
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeecc
Q 024018 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (274)
Q Consensus 98 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 177 (274)
...++|||+|||+.+++++|+++|+.||.|..+.++.+.+|.++|||||+|.+.++|.+|++.|+|..++|+.|+|.++.
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999975
No 94
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.80 E-value=5.2e-19 Score=130.16 Aligned_cols=82 Identities=29% Similarity=0.376 Sum_probs=78.1
Q ss_pred CCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 024018 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALS 270 (274)
Q Consensus 191 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~ 270 (274)
..+.++|||+|||..+++++|+++|+. ||.|.++.++.+..+|.++|||||+|.+.++|.+|++.|+|..|+|+.|+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAP-FGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 445789999999999999999999998 9999999999998889999999999999999999999999999999999999
Q ss_pred Eee
Q 024018 271 YLY 273 (274)
Q Consensus 271 ~a~ 273 (274)
||+
T Consensus 91 ~a~ 93 (115)
T 2dgo_A 91 WAT 93 (115)
T ss_dssp ESS
T ss_pred Ecc
Confidence 985
No 95
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4e-19 Score=128.12 Aligned_cols=83 Identities=22% Similarity=0.311 Sum_probs=78.7
Q ss_pred CCCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEE
Q 024018 190 KPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIAL 269 (274)
Q Consensus 190 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v 269 (274)
...+.++|||+|||..+++++|+++|+. ||.|..+.++.+..+|.++|||||+|.+.++|.+|++.|||..|+|+.|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRP-FGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNV 89 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTT-TCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh-CCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 3455799999999999999999999998 999999999999889999999999999999999999999999999999999
Q ss_pred EEee
Q 024018 270 SYLY 273 (274)
Q Consensus 270 ~~a~ 273 (274)
.||+
T Consensus 90 ~~a~ 93 (103)
T 2cq0_A 90 EWAK 93 (103)
T ss_dssp EESS
T ss_pred EECC
Confidence 9985
No 96
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.2e-19 Score=132.26 Aligned_cols=83 Identities=30% Similarity=0.564 Sum_probs=76.8
Q ss_pred ccCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEee
Q 024018 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (274)
Q Consensus 96 ~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 175 (274)
.....++|||+|||.++++++|+++|+.||.|..+.+..++. .++|||||+|.+.++|.+|++.|+|..++|+.|+|.+
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT-BCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC-CCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 345678999999999999999999999999999999988864 4899999999999999999999999999999999999
Q ss_pred cccc
Q 024018 176 AKIK 179 (274)
Q Consensus 176 ~~~~ 179 (274)
+.++
T Consensus 104 a~~~ 107 (109)
T 2err_A 104 ATAR 107 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 9765
No 97
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.80 E-value=2.8e-19 Score=129.62 Aligned_cols=87 Identities=20% Similarity=0.345 Sum_probs=79.9
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCC-CCceeEEEEEECCHHHHHHHHHHcCCCee---cCcEEE
Q 024018 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYEF---EGRTLK 172 (274)
Q Consensus 97 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~-~~~~g~afv~f~~~~~a~~a~~~l~~~~~---~g~~i~ 172 (274)
+...++|||+|||.++++++|+++|+.||.|..|.++.++. |.++|||||+|.+.++|.+|++.|+|..+ .|+.|+
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 44668899999999999999999999999999999998875 89999999999999999999999999888 899999
Q ss_pred EeecccccCCC
Q 024018 173 VNYAKIKKKNP 183 (274)
Q Consensus 173 v~~~~~~~~~~ 183 (274)
|.++..+....
T Consensus 90 v~~a~~~~~~~ 100 (106)
T 2dgp_A 90 VKPADSESRGG 100 (106)
T ss_dssp EEECCCCSCCC
T ss_pred EEECCcccccC
Confidence 99998876543
No 98
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.3e-19 Score=129.28 Aligned_cols=82 Identities=18% Similarity=0.357 Sum_probs=78.1
Q ss_pred CCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 024018 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALS 270 (274)
Q Consensus 191 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~ 270 (274)
..+.++|||+|||..+++++|+++|+. ||.|.++.++.+..+|.++|||||+|.+.++|.+|++.|||..++|+.|+|.
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAE-YGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGG-GSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhc-cCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 345689999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred Eee
Q 024018 271 YLY 273 (274)
Q Consensus 271 ~a~ 273 (274)
||+
T Consensus 99 ~a~ 101 (106)
T 1p27_B 99 WCF 101 (106)
T ss_dssp ESE
T ss_pred eec
Confidence 985
No 99
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.80 E-value=7.5e-19 Score=126.72 Aligned_cols=85 Identities=20% Similarity=0.383 Sum_probs=77.8
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCC-CCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEee
Q 024018 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (274)
Q Consensus 97 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~-~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 175 (274)
....++|||+|||+++++++|+++|+.|| |..|.++.++. |+++|||||+|.+.++|.+|+ .|+|..++|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 34568899999999999999999999997 99999999875 899999999999999999999 7999999999999999
Q ss_pred cccccCCC
Q 024018 176 AKIKKKNP 183 (274)
Q Consensus 176 ~~~~~~~~ 183 (274)
+.++....
T Consensus 90 a~~~~~~~ 97 (103)
T 2dng_A 90 AEGRKQDK 97 (103)
T ss_dssp CCCCCCCC
T ss_pred ecCCCCCC
Confidence 98776543
No 100
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4e-19 Score=126.53 Aligned_cols=81 Identities=23% Similarity=0.388 Sum_probs=75.6
Q ss_pred CCCeEEEeCCCCCCCHHHHH----HHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEe
Q 024018 99 SKTRLVAQNVPWTSTHEDIR----ALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174 (274)
Q Consensus 99 ~~~~l~v~nLp~~~t~~~L~----~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 174 (274)
..++|||+|||+++++++|+ ++|+.||.|.+|.++.++.+ +|||||+|.+.++|.+|++.|||..++|+.|+|.
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~ 85 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY--QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVS 85 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST--TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 45689999999999999999 99999999999999988766 8999999999999999999999999999999999
Q ss_pred ecccccC
Q 024018 175 YAKIKKK 181 (274)
Q Consensus 175 ~~~~~~~ 181 (274)
++++...
T Consensus 86 ~a~~~~~ 92 (96)
T 2dgx_A 86 LATGASG 92 (96)
T ss_dssp ECCCSSC
T ss_pred EcCCCCC
Confidence 9987644
No 101
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.5e-19 Score=132.86 Aligned_cols=84 Identities=18% Similarity=0.314 Sum_probs=78.1
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCC-CCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEee
Q 024018 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (274)
Q Consensus 97 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~-~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 175 (274)
+...++|||+|||+++++++|+++|+.||.|..|.|+.++. |.++|||||+|.+.++|.+|+ .|+|..|+|+.|+|.+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 100 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQA 100 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEe
Confidence 44568999999999999999999999999999999998875 899999999999999999999 8999999999999999
Q ss_pred cccccC
Q 024018 176 AKIKKK 181 (274)
Q Consensus 176 ~~~~~~ 181 (274)
+..+..
T Consensus 101 a~~~~~ 106 (114)
T 2cq4_A 101 SQAEKN 106 (114)
T ss_dssp HHHHHH
T ss_pred cCCCcc
Confidence 987654
No 102
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=5.6e-19 Score=126.67 Aligned_cols=81 Identities=19% Similarity=0.342 Sum_probs=76.7
Q ss_pred CCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 024018 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALS 270 (274)
Q Consensus 191 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~ 270 (274)
..+.++|||+|||..+++++|+++|+. ||.|.++.++.+. +|.++|||||+|.+.++|.+|++.|||..++|+.|+|.
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKA-HGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTT-TSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-CCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 345689999999999999999999999 9999999999988 79999999999999999999999999999999999999
Q ss_pred Eee
Q 024018 271 YLY 273 (274)
Q Consensus 271 ~a~ 273 (274)
||+
T Consensus 92 ~a~ 94 (100)
T 2do4_A 92 ISN 94 (100)
T ss_dssp ECC
T ss_pred ECC
Confidence 985
No 103
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.80 E-value=2.8e-19 Score=131.58 Aligned_cols=83 Identities=29% Similarity=0.338 Sum_probs=78.4
Q ss_pred CCCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEE
Q 024018 190 KPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIAL 269 (274)
Q Consensus 190 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v 269 (274)
...+.++|||+|||..+++++|+++|+. ||.|.++.++.+..+|.++|||||+|.+.++|.+|++.|||..|+|+.|+|
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 99 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMP-FGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 99 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGG-GSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 3345689999999999999999999998 999999999999988999999999999999999999999999999999999
Q ss_pred EEee
Q 024018 270 SYLY 273 (274)
Q Consensus 270 ~~a~ 273 (274)
.||+
T Consensus 100 ~~a~ 103 (115)
T 2cpz_A 100 QLKR 103 (115)
T ss_dssp ECCC
T ss_pred EEcC
Confidence 9985
No 104
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.80 E-value=5.1e-19 Score=124.85 Aligned_cols=84 Identities=20% Similarity=0.399 Sum_probs=77.7
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeecc
Q 024018 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (274)
Q Consensus 98 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 177 (274)
...++|||+|||+++++++|+++|+.||.|..+.+..+ +|.++|||||+|.+.++|.+|++.|+|..++|+.|+|.+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~-~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES-SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc-CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 35688999999999999999999999999999999874 78899999999999999999999999999999999999998
Q ss_pred cccCC
Q 024018 178 IKKKN 182 (274)
Q Consensus 178 ~~~~~ 182 (274)
.....
T Consensus 85 ~~~~~ 89 (92)
T 2dgv_A 85 NASGP 89 (92)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 76543
No 105
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=6.3e-19 Score=129.94 Aligned_cols=85 Identities=25% Similarity=0.440 Sum_probs=78.2
Q ss_pred ccCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCC-CCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEe
Q 024018 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174 (274)
Q Consensus 96 ~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~-~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 174 (274)
.+...++|||+|||+++++++|+++|+.||.|..|.|+.++. ++++|||||+|.+.++|.+|++.+++ .+.|+.|+|.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 455678999999999999999999999999999999999864 89999999999999999999999998 8999999999
Q ss_pred ecccccC
Q 024018 175 YAKIKKK 181 (274)
Q Consensus 175 ~~~~~~~ 181 (274)
++.....
T Consensus 92 ~a~~~~~ 98 (116)
T 2cqd_A 92 LAYLGAK 98 (116)
T ss_dssp ESTTTCC
T ss_pred EcccCCC
Confidence 9976543
No 106
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=3e-19 Score=127.84 Aligned_cols=84 Identities=18% Similarity=0.240 Sum_probs=78.2
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHhccCceE-EEEEeecC-CCCceeEEEEEECCHHHHHHHHHHcCCCeecCcE----E
Q 024018 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVL-DIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRT----L 171 (274)
Q Consensus 98 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~-~v~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~----i 171 (274)
...++|||+|||+++++++|+++|+.||.|. .+.+++++ +|.++|||||+|.+.++|.+|++.|||..+.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 3568899999999999999999999999999 99999987 5899999999999999999999999999999999 9
Q ss_pred EEeecccccC
Q 024018 172 KVNYAKIKKK 181 (274)
Q Consensus 172 ~v~~~~~~~~ 181 (274)
+|.|+.+...
T Consensus 87 ~v~~a~~~~~ 96 (99)
T 2div_A 87 KLNYATYSGP 96 (99)
T ss_dssp CEEETTCCSS
T ss_pred EEeecCCCCC
Confidence 9999986643
No 107
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.79 E-value=2.4e-19 Score=134.64 Aligned_cols=84 Identities=25% Similarity=0.478 Sum_probs=78.5
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCC-CCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEee
Q 024018 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (274)
Q Consensus 97 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~-~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 175 (274)
....++|||+|||+++++++|+++|+.||.|..|.++.++. |.++|||||+|.+.++|.+|++.|+|..|+|+.|+|.+
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34568899999999999999999999999999999998864 89999999999999999999999999999999999999
Q ss_pred ccccc
Q 024018 176 AKIKK 180 (274)
Q Consensus 176 ~~~~~ 180 (274)
+..+.
T Consensus 123 a~~~~ 127 (129)
T 2kxn_B 123 SITKR 127 (129)
T ss_dssp CSSSS
T ss_pred ecCCC
Confidence 98764
No 108
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=5.5e-19 Score=124.45 Aligned_cols=82 Identities=16% Similarity=0.260 Sum_probs=76.9
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeec
Q 024018 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (274)
Q Consensus 97 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 176 (274)
....++|||+|||+++++++|+++|+.| .|..+.++.+.+|+++|||||+|.+.++|.+|++ |+|..++|+.|+|.++
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 3466889999999999999999999999 8999999999889999999999999999999999 9999999999999999
Q ss_pred cccc
Q 024018 177 KIKK 180 (274)
Q Consensus 177 ~~~~ 180 (274)
..+.
T Consensus 85 ~~~~ 88 (91)
T 2dgw_A 85 KSGP 88 (91)
T ss_dssp SSCC
T ss_pred CcCC
Confidence 8763
No 109
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.79 E-value=3.3e-19 Score=131.22 Aligned_cols=77 Identities=30% Similarity=0.451 Sum_probs=72.4
Q ss_pred ccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEee
Q 024018 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSYLY 273 (274)
Q Consensus 194 ~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a~ 273 (274)
..+|||+|||..+++++|+++|+. ||.|.++.|+.+.. .++|||||+|.+.++|.+|++.|+|..++|+.|+|.|++
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~-~G~v~~v~i~~d~~--~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSA-FGNILSCKVVCDEN--GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEEETT--EEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCEEEECCCCCCCCHHHHHHHHhc-cCCEEEEEEeecCC--CCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 467999999999999999999999 99999999999863 579999999999999999999999999999999999874
No 110
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.1e-19 Score=130.27 Aligned_cols=88 Identities=26% Similarity=0.389 Sum_probs=80.4
Q ss_pred ccCCCCeEEEeCCCCCCCHHHHHHHHhccCceE--------EEEEeecC-CCCceeEEEEEECCHHHHHHHHHHcCCCee
Q 024018 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVL--------DIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEF 166 (274)
Q Consensus 96 ~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~--------~v~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~ 166 (274)
+....++|||+|||+.+++++|+++|+.||.|. .|.+..++ +|+++|||||+|.+.++|.+|++.|+|..+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 345678999999999999999999999999998 69998885 589999999999999999999999999999
Q ss_pred cCcEEEEeecccccCCC
Q 024018 167 EGRTLKVNYAKIKKKNP 183 (274)
Q Consensus 167 ~g~~i~v~~~~~~~~~~ 183 (274)
.|+.|+|.++..+....
T Consensus 91 ~g~~l~V~~a~~~~~~~ 107 (113)
T 2cpe_A 91 QGSKLKVSLARKKPPMN 107 (113)
T ss_dssp TTEECEEECSSCCCCST
T ss_pred CCCEEEEEECCCCCCCC
Confidence 99999999998876543
No 111
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.79 E-value=3.1e-19 Score=129.87 Aligned_cols=84 Identities=20% Similarity=0.378 Sum_probs=79.0
Q ss_pred CCCCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEE
Q 024018 189 PKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIA 268 (274)
Q Consensus 189 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~ 268 (274)
....+.++|||+|||..+++++|+++|+. ||.|.++.++.+..+|.++|||||+|.+.++|.+|++.|+|..++|+.|+
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 99 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEP-FGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 99 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTT-TSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 33455789999999999999999999998 99999999999998999999999999999999999999999999999999
Q ss_pred EEEee
Q 024018 269 LSYLY 273 (274)
Q Consensus 269 v~~a~ 273 (274)
|+||+
T Consensus 100 V~~a~ 104 (108)
T 2jrs_A 100 VGHVT 104 (108)
T ss_dssp EECSC
T ss_pred EEEcc
Confidence 99985
No 112
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.79 E-value=4.8e-19 Score=129.07 Aligned_cols=86 Identities=22% Similarity=0.362 Sum_probs=75.4
Q ss_pred ccCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCC-CCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEe
Q 024018 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174 (274)
Q Consensus 96 ~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~-~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 174 (274)
.....++|||+|||+++++++|+++|+.||.|..|.+..++. |.++|||||+|.+.++|.+|++.+ +..++|+.|+|.
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~ 99 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPK 99 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEE
Confidence 445678899999999999999999999999999999999874 899999999999999999999975 699999999999
Q ss_pred ecccccCC
Q 024018 175 YAKIKKKN 182 (274)
Q Consensus 175 ~~~~~~~~ 182 (274)
++.++...
T Consensus 100 ~a~~~~~~ 107 (109)
T 2rs2_A 100 VAFPRRAQ 107 (109)
T ss_dssp ECCCCCCC
T ss_pred EccCCCCC
Confidence 99876543
No 113
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=6.1e-19 Score=127.44 Aligned_cols=84 Identities=18% Similarity=0.342 Sum_probs=77.5
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCC--CCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEee
Q 024018 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (274)
Q Consensus 98 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~--~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 175 (274)
...++|||+|||+++++++|+++|+.|| |..|.|+.++. |+++|||||+|.+.++|.+|+ .|+|..++|+.|+|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 3568899999999999999999999999 99999998874 899999999999999999999 7999999999999999
Q ss_pred cccccCCC
Q 024018 176 AKIKKKNP 183 (274)
Q Consensus 176 ~~~~~~~~ 183 (274)
+..+....
T Consensus 91 a~~~~~~~ 98 (104)
T 1wi8_A 91 ADQAQDKD 98 (104)
T ss_dssp CCCCCCCC
T ss_pred ccCCCCCC
Confidence 98876543
No 114
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.6e-19 Score=128.84 Aligned_cols=82 Identities=20% Similarity=0.275 Sum_probs=78.0
Q ss_pred CCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 024018 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALS 270 (274)
Q Consensus 191 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~ 270 (274)
..+.++|||+|||..+++++|+++|+. ||.|.++.++.+..+|.++|||||+|.+.++|.+|++.|||..++|+.|+|.
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIP-FGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTT-TSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhc-cCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 345789999999999999999999999 9999999999998899999999999999999999999999999999999999
Q ss_pred Eee
Q 024018 271 YLY 273 (274)
Q Consensus 271 ~a~ 273 (274)
||+
T Consensus 88 ~a~ 90 (102)
T 2cqb_A 88 LAK 90 (102)
T ss_dssp ECC
T ss_pred eCC
Confidence 985
No 115
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.1e-19 Score=128.51 Aligned_cols=83 Identities=20% Similarity=0.240 Sum_probs=78.4
Q ss_pred CCCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEE
Q 024018 190 KPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIAL 269 (274)
Q Consensus 190 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v 269 (274)
...+.++|||+|||..+++++|+++|+. ||.|.++.++.+..+|.++|||||+|.+.++|.+|++.|||..++|+.|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQ-AGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHT-TSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 3445789999999999999999999999 999999999999888999999999999999999999999999999999999
Q ss_pred EEee
Q 024018 270 SYLY 273 (274)
Q Consensus 270 ~~a~ 273 (274)
.||+
T Consensus 90 ~~a~ 93 (105)
T 1x5u_A 90 NKAS 93 (105)
T ss_dssp EETT
T ss_pred EECC
Confidence 9985
No 116
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.6e-18 Score=126.30 Aligned_cols=84 Identities=24% Similarity=0.469 Sum_probs=76.3
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeec
Q 024018 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (274)
Q Consensus 97 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 176 (274)
....++|||+|||+++++++|+++|+.||.|..+.+..+ +.++|||||+|.+.++|.+|++.|++..++|+.|+|.++
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR--RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS--SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 346689999999999999999999999999999999554 557999999999999999999999999999999999999
Q ss_pred ccccCC
Q 024018 177 KIKKKN 182 (274)
Q Consensus 177 ~~~~~~ 182 (274)
+.+...
T Consensus 97 ~~~~~~ 102 (109)
T 1x4a_A 97 RSGRGT 102 (109)
T ss_dssp CCCCCC
T ss_pred ccCCCC
Confidence 877554
No 117
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=4.6e-19 Score=126.88 Aligned_cols=81 Identities=19% Similarity=0.373 Sum_probs=76.8
Q ss_pred CCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 024018 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALS 270 (274)
Q Consensus 191 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~ 270 (274)
..+.++|||+|||..+++++|+++|+. ||.|.++.++.+..+|.++|||||+|.+.++|.+|++ |+|..++|+.|+|.
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKK-FGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSS-SSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 345789999999999999999999998 9999999999998899999999999999999999999 99999999999999
Q ss_pred Eee
Q 024018 271 YLY 273 (274)
Q Consensus 271 ~a~ 273 (274)
||+
T Consensus 85 ~a~ 87 (99)
T 2dgs_A 85 RAE 87 (99)
T ss_dssp ECC
T ss_pred ECC
Confidence 985
No 118
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.79 E-value=5e-19 Score=125.64 Aligned_cols=81 Identities=22% Similarity=0.294 Sum_probs=76.7
Q ss_pred CCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 024018 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALS 270 (274)
Q Consensus 191 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~ 270 (274)
..+.++|||+|||..+++++|+++|+. ||.|.++.++.+.. |.++|||||+|.+.++|.+|++.|||..++|+.|+|+
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~-~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQ-AGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGG-GSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHh-cCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 345789999999999999999999999 99999999999886 8999999999999999999999999999999999999
Q ss_pred Eee
Q 024018 271 YLY 273 (274)
Q Consensus 271 ~a~ 273 (274)
||+
T Consensus 91 ~a~ 93 (95)
T 2ywk_A 91 GPS 93 (95)
T ss_dssp CCC
T ss_pred EcC
Confidence 986
No 119
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.7e-19 Score=128.78 Aligned_cols=82 Identities=26% Similarity=0.376 Sum_probs=77.9
Q ss_pred CCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 024018 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALS 270 (274)
Q Consensus 191 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~ 270 (274)
..+.++|||+|||..+++++|+++|+. ||.|.++.++.+..++.++|||||+|.+.++|.+|++.|||..++|+.|+|.
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSK-YGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHH-HSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHh-cCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 345789999999999999999999999 9999999999998889999999999999999999999999999999999999
Q ss_pred Eee
Q 024018 271 YLY 273 (274)
Q Consensus 271 ~a~ 273 (274)
||+
T Consensus 88 ~a~ 90 (102)
T 1x5s_A 88 QAG 90 (102)
T ss_dssp EEE
T ss_pred ECC
Confidence 985
No 120
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.79 E-value=2.8e-19 Score=132.18 Aligned_cols=82 Identities=20% Similarity=0.319 Sum_probs=77.0
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhccCc---eEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEE
Q 024018 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGT---VLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKV 173 (274)
Q Consensus 97 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~---v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v 173 (274)
....++|||+|||+++|+++|+++|+.||. |..|+|+.++.|+++|||||+|.+.++|.+|++ ++|..++||.|+|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 346688999999999999999999999999 899999999889999999999999999999999 8999999999999
Q ss_pred eecccc
Q 024018 174 NYAKIK 179 (274)
Q Consensus 174 ~~~~~~ 179 (274)
.++..+
T Consensus 93 ~~a~~~ 98 (118)
T 2db1_A 93 FKSHRT 98 (118)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 998755
No 121
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=4.6e-19 Score=128.27 Aligned_cols=87 Identities=23% Similarity=0.457 Sum_probs=80.1
Q ss_pred ccCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecC-CCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEe
Q 024018 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174 (274)
Q Consensus 96 ~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 174 (274)
.....++|||+|||+.+++++|+++|+.||.|..|.++.++ +|.++|||||+|.+.++|.+|++. ++..|+|+.|+|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPK 90 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEE
Confidence 34567899999999999999999999999999999999986 589999999999999999999998 9999999999999
Q ss_pred ecccccCCC
Q 024018 175 YAKIKKKNP 183 (274)
Q Consensus 175 ~~~~~~~~~ 183 (274)
++.++....
T Consensus 91 ~a~~~~~~~ 99 (105)
T 2dh8_A 91 PCTPRGMQP 99 (105)
T ss_dssp CSCCSSCCT
T ss_pred EccCCCCCC
Confidence 998876554
No 122
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.79 E-value=5.4e-19 Score=129.01 Aligned_cols=82 Identities=22% Similarity=0.372 Sum_probs=78.0
Q ss_pred CCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 024018 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALS 270 (274)
Q Consensus 191 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~ 270 (274)
..+.++|||+|||..+++++|+++|+. ||.|.++.++.+..+|.++|||||+|.+.++|.+|+..|||..++|+.|+|.
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCD-YGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGG-GSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 445789999999999999999999999 9999999999998899999999999999999999999999999999999999
Q ss_pred Eee
Q 024018 271 YLY 273 (274)
Q Consensus 271 ~a~ 273 (274)
||+
T Consensus 102 ~a~ 104 (110)
T 1oo0_B 102 WCF 104 (110)
T ss_dssp ESE
T ss_pred Ecc
Confidence 985
No 123
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=2.4e-19 Score=128.52 Aligned_cols=79 Identities=15% Similarity=0.223 Sum_probs=71.8
Q ss_pred CCCeEEEeCCCC-CCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCC--CeecCcEEEEee
Q 024018 99 SKTRLVAQNVPW-TSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLES--YEFEGRTLKVNY 175 (274)
Q Consensus 99 ~~~~l~v~nLp~-~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~--~~~~g~~i~v~~ 175 (274)
..++|||+|||+ .+++++|+++|++||.|.+|.|+++ +|||||+|.+.++|.+|++.|++ ..+.|++|+|.+
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 88 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK-----INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHL 88 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS-----SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEE
Confidence 568899999999 9999999999999999999999865 68999999999999999998886 459999999999
Q ss_pred cccccCC
Q 024018 176 AKIKKKN 182 (274)
Q Consensus 176 ~~~~~~~ 182 (274)
+......
T Consensus 89 a~~~~~~ 95 (102)
T 1x4d_A 89 SQKYKRI 95 (102)
T ss_dssp ECCCTTS
T ss_pred CCCCCCC
Confidence 9865543
No 124
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=3.2e-19 Score=127.68 Aligned_cols=82 Identities=22% Similarity=0.265 Sum_probs=77.8
Q ss_pred CCCccceEEecCCccccHHHHHHHHhhcCCceE-EEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeE---
Q 024018 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVV-SAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLV--- 266 (274)
Q Consensus 191 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~-~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~--- 266 (274)
..+.++|||+|||..+++++|+++|++ ||.|. ++.++.++.+|.++|||||+|.+.++|.+|++.|||..+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFAT-MGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHH-TTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHH-hCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 345789999999999999999999999 99999 9999999999999999999999999999999999999999999
Q ss_pred -EEEEEee
Q 024018 267 -IALSYLY 273 (274)
Q Consensus 267 -i~v~~a~ 273 (274)
|+|.||+
T Consensus 85 ~l~v~~a~ 92 (99)
T 2div_A 85 RFKLNYAT 92 (99)
T ss_dssp ECCEEETT
T ss_pred eEEEeecC
Confidence 9999985
No 125
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=2.2e-19 Score=129.55 Aligned_cols=82 Identities=18% Similarity=0.244 Sum_probs=78.0
Q ss_pred CCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 024018 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALS 270 (274)
Q Consensus 191 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~ 270 (274)
..+.++|||+|||..+++++|+++|+. ||.|.++.++.+..+|.++|||||+|.+.++|.+|++.|||..++|+.|+|.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEK-YGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTT-TSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 344789999999999999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred Eee
Q 024018 271 YLY 273 (274)
Q Consensus 271 ~a~ 273 (274)
||+
T Consensus 89 ~a~ 91 (103)
T 2dnm_A 89 VAR 91 (103)
T ss_dssp ECS
T ss_pred ECC
Confidence 985
No 126
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.79 E-value=5.8e-19 Score=136.74 Aligned_cols=79 Identities=18% Similarity=0.188 Sum_probs=75.9
Q ss_pred ccceEEecCCccccHHHHHHHHhhcCC--ceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 024018 194 TFNLFIANLSFEARAKDLREFFISEGW--DVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271 (274)
Q Consensus 194 ~~~l~V~nlp~~~~~~~l~~~f~~~~G--~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~ 271 (274)
.++|||+|||+.+++++|+++|+. || .|.++.++.|..+|.++|||||+|.+.++|.+|++.|||..|+|+.|+|.|
T Consensus 55 ~~~lfVgnLp~~~te~~L~~~F~~-~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 55 RAAVYVGSFSWWTTDQQLIQVIRS-IGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp -CEEEEECCCTTCCHHHHHHHHHH-TTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHH-HCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 578999999999999999999999 99 999999999999999999999999999999999999999999999999999
Q ss_pred ee
Q 024018 272 LY 273 (274)
Q Consensus 272 a~ 273 (274)
|.
T Consensus 134 a~ 135 (156)
T 3n9u_C 134 AT 135 (156)
T ss_dssp CC
T ss_pred cC
Confidence 84
No 127
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.7e-19 Score=127.31 Aligned_cols=80 Identities=26% Similarity=0.420 Sum_probs=76.7
Q ss_pred CccceEEecCCccccHHHHHHHHhhcCCceEEE-EEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 024018 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSA-EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271 (274)
Q Consensus 193 ~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~-~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~ 271 (274)
+.++|||+|||..+++++|+++|+. ||.|.++ .++.+..+|.++|||||+|.+.++|.+|++.|||..++|+.|+|.|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSA-FGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHT-TSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 4789999999999999999999999 9999999 9999988999999999999999999999999999999999999999
Q ss_pred ee
Q 024018 272 LY 273 (274)
Q Consensus 272 a~ 273 (274)
|+
T Consensus 83 a~ 84 (96)
T 1x5t_A 83 AF 84 (96)
T ss_dssp SC
T ss_pred ec
Confidence 85
No 128
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.1e-18 Score=125.11 Aligned_cols=80 Identities=18% Similarity=0.252 Sum_probs=72.4
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHc--CCCeecCcEEEEee
Q 024018 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNL--ESYEFEGRTLKVNY 175 (274)
Q Consensus 98 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l--~~~~~~g~~i~v~~ 175 (274)
...++|||+|||+.+++++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|++.| ++..+.|++|+|.+
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 87 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQY 87 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEE
Confidence 45678999999999999999999999999999998865 899999999999999999976 46789999999999
Q ss_pred cccccCC
Q 024018 176 AKIKKKN 182 (274)
Q Consensus 176 ~~~~~~~ 182 (274)
+..+...
T Consensus 88 a~~~~~~ 94 (101)
T 2cq1_A 88 SNHKELK 94 (101)
T ss_dssp CSCSSCC
T ss_pred cCcccCc
Confidence 9876544
No 129
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=4.1e-19 Score=126.87 Aligned_cols=80 Identities=25% Similarity=0.370 Sum_probs=75.6
Q ss_pred CccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCC---CCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEE
Q 024018 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDN---PRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIAL 269 (274)
Q Consensus 193 ~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~---~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v 269 (274)
+.++|||+|||..+++++|+++|+. ||.|.++.++.+.. ++.++|||||+|.+.++|.+|++.|||..++|+.|+|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSK-VGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHT-TSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4689999999999999999999998 99999999999876 5689999999999999999999999999999999999
Q ss_pred EEee
Q 024018 270 SYLY 273 (274)
Q Consensus 270 ~~a~ 273 (274)
.||+
T Consensus 83 ~~a~ 86 (98)
T 2cpf_A 83 RISE 86 (98)
T ss_dssp ECSS
T ss_pred EEcc
Confidence 9985
No 130
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=7e-19 Score=129.68 Aligned_cols=86 Identities=24% Similarity=0.405 Sum_probs=78.9
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCC-CCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEee
Q 024018 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (274)
Q Consensus 97 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~-~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 175 (274)
....++|||+|||+++++++|+++|+.||.|..|.|+.++. |.++|||||+|.+.++|.+|++. ++..++|+.|+|.+
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEEC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEE
Confidence 34568899999999999999999999999999999999864 89999999999999999999997 99999999999999
Q ss_pred cccccCCC
Q 024018 176 AKIKKKNP 183 (274)
Q Consensus 176 ~~~~~~~~ 183 (274)
+.++....
T Consensus 103 a~~~~~~~ 110 (116)
T 1x4b_A 103 AVAREESG 110 (116)
T ss_dssp CSSCCCCC
T ss_pred CCCCccCC
Confidence 98876543
No 131
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=8e-19 Score=128.26 Aligned_cols=83 Identities=22% Similarity=0.319 Sum_probs=78.4
Q ss_pred CCCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhC------CceeC
Q 024018 190 KPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ------GKVIM 263 (274)
Q Consensus 190 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~------g~~i~ 263 (274)
...+.++|||+|||..+++++|+++|+. ||.|.+|.++.+..+|.++|||||+|.+.++|.+|++.|| |..++
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQ-FGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHT-TSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 3445789999999999999999999998 9999999999999999999999999999999999999999 99999
Q ss_pred CeEEEEEEee
Q 024018 264 CLVIALSYLY 273 (274)
Q Consensus 264 g~~i~v~~a~ 273 (274)
|+.|+|.||+
T Consensus 90 g~~l~v~~a~ 99 (111)
T 1x4h_A 90 GRQLKVDLAV 99 (111)
T ss_dssp SCEEEEECCC
T ss_pred CEEEEEEECC
Confidence 9999999985
No 132
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=9.2e-19 Score=126.49 Aligned_cols=83 Identities=19% Similarity=0.280 Sum_probs=76.4
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHhccCceEE-EEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeec
Q 024018 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (274)
Q Consensus 98 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~-v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 176 (274)
...++|||+|||+++++++|+++|+.||.|.. |.|+.+.+|+++|||||+|.+.++|.+|++. ++..++||.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC
Confidence 45688999999999999999999999999987 8888887899999999999999999999996 999999999999998
Q ss_pred ccccC
Q 024018 177 KIKKK 181 (274)
Q Consensus 177 ~~~~~ 181 (274)
..+..
T Consensus 92 ~~~~~ 96 (104)
T 1wg5_A 92 SRAEV 96 (104)
T ss_dssp CTTTS
T ss_pred CHHHH
Confidence 76543
No 133
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=9.1e-19 Score=127.09 Aligned_cols=83 Identities=22% Similarity=0.383 Sum_probs=78.0
Q ss_pred CCCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEc-CCCCCCccEEEEEEcCHHHHHHHHHHh-CCceeCCeEE
Q 024018 190 KPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFH-DNPRRSAGYGFVSFKSKKVAETAISAF-QGKVIMCLVI 267 (274)
Q Consensus 190 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~~l-~g~~i~g~~i 267 (274)
...+.++|||+|||..+++++|+++|+. ||.|..+.++.+ ..+|.++|||||+|.+.++|.+|++.| ||..+.|+.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFST-FGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHT-TSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHc-cCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 3445789999999999999999999998 999999999998 778999999999999999999999999 9999999999
Q ss_pred EEEEee
Q 024018 268 ALSYLY 273 (274)
Q Consensus 268 ~v~~a~ 273 (274)
+|.||+
T Consensus 90 ~v~~a~ 95 (107)
T 2cph_A 90 VLEWAD 95 (107)
T ss_dssp EEEECC
T ss_pred EEEeCC
Confidence 999985
No 134
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.78 E-value=1.4e-19 Score=129.92 Aligned_cols=82 Identities=20% Similarity=0.358 Sum_probs=74.3
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecC--CCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEe
Q 024018 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS--KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174 (274)
Q Consensus 97 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~--~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 174 (274)
....++|||+|||+++++++|+++|+.|| |.++.|..++ +|+++|||||+|.+.++|.+|+ .|+|..++|+.|+|.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 34668999999999999999999999999 9999999986 5899999999999999999999 799999999999999
Q ss_pred eccccc
Q 024018 175 YAKIKK 180 (274)
Q Consensus 175 ~~~~~~ 180 (274)
++..+.
T Consensus 94 ~a~~~~ 99 (100)
T 2j76_E 94 VADQAQ 99 (100)
T ss_dssp ECCCSC
T ss_pred eccCCC
Confidence 998754
No 135
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.2e-19 Score=129.70 Aligned_cols=84 Identities=27% Similarity=0.526 Sum_probs=78.1
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecC-CCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeec
Q 024018 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (274)
Q Consensus 98 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 176 (274)
...++|||+|||+.+++++|+++|+.||.|..+.+..++ +|.++|||||+|.+.++|.+|++.|+|..++|+.|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 355789999999999999999999999999999999886 5899999999999999999999999999999999999999
Q ss_pred ccccC
Q 024018 177 KIKKK 181 (274)
Q Consensus 177 ~~~~~ 181 (274)
..+..
T Consensus 86 ~~~~~ 90 (104)
T 1p1t_A 86 ASEKN 90 (104)
T ss_dssp TCTTH
T ss_pred CCccc
Confidence 87643
No 136
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.78 E-value=1e-18 Score=130.32 Aligned_cols=85 Identities=19% Similarity=0.341 Sum_probs=79.6
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeecc
Q 024018 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (274)
Q Consensus 98 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 177 (274)
...++|||+|||+.+++++|+++|+.||.|..+.+..+++|+++|||||+|.+.++|.+|++.|+|..++|+.|+|.++.
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 112 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 112 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence 35678999999999999999999999999999999998889999999999999999999999999999999999999998
Q ss_pred cccCC
Q 024018 178 IKKKN 182 (274)
Q Consensus 178 ~~~~~ 182 (274)
.....
T Consensus 113 ~~~~~ 117 (124)
T 2kt5_A 113 SQIDL 117 (124)
T ss_dssp CTTCC
T ss_pred CCCCC
Confidence 76544
No 137
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.78 E-value=2.1e-19 Score=135.45 Aligned_cols=85 Identities=24% Similarity=0.401 Sum_probs=78.5
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhccCceEE--EEEeecC-CCCceeEEEEEECCHHHHHHHHHHcCCC----eecCc
Q 024018 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLD--IELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESY----EFEGR 169 (274)
Q Consensus 97 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~--v~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~----~~~g~ 169 (274)
....++|||+|||+++|+++|+++|+.||.|.. |+|++++ +|+++|||||+|.+. +|.+|+..|+|. .++|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 346688999999999999999999999999966 9999998 699999999999999 999999999999 99999
Q ss_pred EEEEeecccccCC
Q 024018 170 TLKVNYAKIKKKN 182 (274)
Q Consensus 170 ~i~v~~~~~~~~~ 182 (274)
.|+|.++.++...
T Consensus 99 ~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 99 TINVEFAKGSKRD 111 (131)
T ss_dssp CCCCEECCCSCCC
T ss_pred EEEEEECCCCCCC
Confidence 9999999876554
No 138
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.78 E-value=4.9e-19 Score=132.91 Aligned_cols=83 Identities=24% Similarity=0.345 Sum_probs=78.6
Q ss_pred CCCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEE
Q 024018 190 KPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIAL 269 (274)
Q Consensus 190 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v 269 (274)
...+.++|||+|||..+++++|+++|+. ||.|.++.++.++.+|.++|||||+|.+.++|.+|++.|+|..|+|+.|+|
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~-~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSK-YGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTT-TSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3455789999999999999999999998 999999999999999999999999999999999999999999999999999
Q ss_pred EEee
Q 024018 270 SYLY 273 (274)
Q Consensus 270 ~~a~ 273 (274)
.||+
T Consensus 121 ~~a~ 124 (129)
T 2kxn_B 121 DFSI 124 (129)
T ss_dssp SCCS
T ss_pred EEec
Confidence 9985
No 139
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.78 E-value=1.5e-18 Score=125.96 Aligned_cols=81 Identities=22% Similarity=0.262 Sum_probs=76.8
Q ss_pred CCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 024018 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALS 270 (274)
Q Consensus 191 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~ 270 (274)
..+.++|||+|||..+++++|+++|+. ||.|.++.++.+. +|.++|||||+|.+.++|.+|++.|||..++|+.|+|+
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAE-FGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHT-TSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 345789999999999999999999998 9999999999998 89999999999999999999999999999999999999
Q ss_pred Eee
Q 024018 271 YLY 273 (274)
Q Consensus 271 ~a~ 273 (274)
||.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 984
No 140
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.8e-19 Score=131.44 Aligned_cols=83 Identities=17% Similarity=0.245 Sum_probs=77.7
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhccCce-EEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEee
Q 024018 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTV-LDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (274)
Q Consensus 97 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v-~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 175 (274)
....++|||+|||+++++++|+++|+.||.| ..|.|+.+++|+++|||||+|.+.++|.+|++. ++..|+|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHV 90 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Confidence 4467889999999999999999999999999 889999999999999999999999999999996 99999999999999
Q ss_pred ccccc
Q 024018 176 AKIKK 180 (274)
Q Consensus 176 ~~~~~ 180 (274)
+..+.
T Consensus 91 a~~~~ 95 (114)
T 2cpy_A 91 VTLED 95 (114)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 98764
No 141
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.78 E-value=1e-18 Score=132.89 Aligned_cols=83 Identities=25% Similarity=0.388 Sum_probs=78.6
Q ss_pred CCCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEE
Q 024018 190 KPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIAL 269 (274)
Q Consensus 190 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v 269 (274)
...+.++|||+|||..+++++|+++|+. ||.|.++.++.+..+|.++|||||+|.+.++|.+|++.|||..++|+.|+|
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFER-YGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHH-HSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 4455689999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred EEee
Q 024018 270 SYLY 273 (274)
Q Consensus 270 ~~a~ 273 (274)
+||+
T Consensus 117 ~~a~ 120 (139)
T 1u6f_A 117 ALAA 120 (139)
T ss_dssp EESS
T ss_pred EECC
Confidence 9985
No 142
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=6.8e-19 Score=128.71 Aligned_cols=85 Identities=16% Similarity=0.239 Sum_probs=77.5
Q ss_pred cCCCCeEEEeCCCCCCCHHHHH---HHHhccCceEEEEEeecCC----CCceeEEEEEECCHHHHHHHHHHcCCCeecCc
Q 024018 97 EYSKTRLVAQNVPWTSTHEDIR---ALFEQHGTVLDIELSMHSK----NRNRGLAFVTMGSPDEATAALNNLESYEFEGR 169 (274)
Q Consensus 97 ~~~~~~l~v~nLp~~~t~~~L~---~~f~~~G~v~~v~~~~~~~----~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~ 169 (274)
....++|||+|||+.+++++|+ ++|++||.|..+.+..+.. +.++|||||+|.+.++|.+|++.|||..++|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 4467889999999999999999 9999999999999988763 35679999999999999999999999999999
Q ss_pred EEEEeecccccC
Q 024018 170 TLKVNYAKIKKK 181 (274)
Q Consensus 170 ~i~v~~~~~~~~ 181 (274)
.|+|.++.++..
T Consensus 92 ~l~V~~a~~k~~ 103 (111)
T 2cpi_A 92 TLKASLGTTKYC 103 (111)
T ss_dssp EEEEESCCCCSC
T ss_pred EEEEEecccccc
Confidence 999999987753
No 143
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.78 E-value=1.3e-18 Score=121.49 Aligned_cols=80 Identities=25% Similarity=0.400 Sum_probs=75.1
Q ss_pred CCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 024018 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALS 270 (274)
Q Consensus 191 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~ 270 (274)
..+.++|||+|||..+++++|+++|+. ||.|.++.++.++.+|.++|||||+|.+.++|.+|++ ++|..++|+.|+|+
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTK-FGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTT-TSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 345789999999999999999999998 9999999999999999999999999999999999997 48889999999999
Q ss_pred Ee
Q 024018 271 YL 272 (274)
Q Consensus 271 ~a 272 (274)
+|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 144
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.78 E-value=8.1e-19 Score=123.00 Aligned_cols=78 Identities=15% Similarity=0.308 Sum_probs=75.2
Q ss_pred ccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEee
Q 024018 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSYLY 273 (274)
Q Consensus 194 ~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a~ 273 (274)
.++|||+|||..+++++|+++|+. ||.|.++.++.+..+|.++|||||+|.+.++|.+|+ .|||..++|+.|+|.+++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHG-CGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGG-GCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 578999999999999999999999 999999999999989999999999999999999999 899999999999999985
No 145
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3.4e-18 Score=123.20 Aligned_cols=85 Identities=19% Similarity=0.430 Sum_probs=77.6
Q ss_pred ccCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCC-CCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEe
Q 024018 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174 (274)
Q Consensus 96 ~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~-~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 174 (274)
.....++|||+|||+.+++++|+++|+.||.|..|.++.++. |.++|||||+|.+.++|.+|++ ++..++|+.|.|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~ 88 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCK 88 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEE
Confidence 345678899999999999999999999999999999999864 9999999999999999999998 5789999999999
Q ss_pred ecccccCC
Q 024018 175 YAKIKKKN 182 (274)
Q Consensus 175 ~~~~~~~~ 182 (274)
++..+...
T Consensus 89 ~a~~~~~~ 96 (103)
T 2cqg_A 89 LPNSKQSQ 96 (103)
T ss_dssp CCCTTCCC
T ss_pred ecCCCCcC
Confidence 99887554
No 146
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.2e-18 Score=125.56 Aligned_cols=79 Identities=15% Similarity=0.183 Sum_probs=71.5
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCC--CeecCcEEEEeec
Q 024018 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLES--YEFEGRTLKVNYA 176 (274)
Q Consensus 99 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~--~~~~g~~i~v~~~ 176 (274)
..++|||+|||+.+++++|+++|++||.|.+|.|+++ +|||||+|.+.++|.+|++.|++ ..++|+.|+|.++
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a 88 (104)
T 1wex_A 14 VSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF-----KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYS 88 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 5678999999999999999999999999999998764 89999999999999999998865 4599999999999
Q ss_pred ccccCC
Q 024018 177 KIKKKN 182 (274)
Q Consensus 177 ~~~~~~ 182 (274)
..+...
T Consensus 89 ~~~~~~ 94 (104)
T 1wex_A 89 TSKRIT 94 (104)
T ss_dssp SSSSCC
T ss_pred cCcccc
Confidence 876544
No 147
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.78 E-value=3.5e-19 Score=134.52 Aligned_cols=82 Identities=20% Similarity=0.337 Sum_probs=76.9
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhccCc---eEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEE
Q 024018 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGT---VLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKV 173 (274)
Q Consensus 97 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~---v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v 173 (274)
....++|||+|||+++|+++|+++|+.||. |..|.|+.++.|+++|||||+|.+.++|++|++ ++|..++||.|+|
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V 119 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEV 119 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEE
Confidence 346688999999999999999999999999 889999999889999999999999999999999 9999999999999
Q ss_pred eecccc
Q 024018 174 NYAKIK 179 (274)
Q Consensus 174 ~~~~~~ 179 (274)
.++..+
T Consensus 120 ~~a~~~ 125 (136)
T 2hgl_A 120 FKSHRT 125 (136)
T ss_dssp EECCHH
T ss_pred EECChH
Confidence 998754
No 148
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.78 E-value=1.3e-18 Score=125.51 Aligned_cols=80 Identities=14% Similarity=0.307 Sum_probs=75.6
Q ss_pred CCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 024018 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALS 270 (274)
Q Consensus 191 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~ 270 (274)
..+.++|||+|||..+++++|+++|+. || |.++.++.+..+|.++|||||+|.+.++|.+|+ .|||..++|+.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKD-LS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTT-SC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHh-CC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 345789999999999999999999999 77 999999999999999999999999999999999 899999999999999
Q ss_pred Eee
Q 024018 271 YLY 273 (274)
Q Consensus 271 ~a~ 273 (274)
||+
T Consensus 89 ~a~ 91 (103)
T 2dng_A 89 IAE 91 (103)
T ss_dssp ECC
T ss_pred Eec
Confidence 985
No 149
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=8.5e-19 Score=128.84 Aligned_cols=81 Identities=15% Similarity=0.274 Sum_probs=73.4
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcC--CCeecCcEEEEee
Q 024018 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLE--SYEFEGRTLKVNY 175 (274)
Q Consensus 98 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~--~~~~~g~~i~v~~ 175 (274)
...++|||+|||+++++++|+++|+.||.|.+|.|+++ +|||||+|.+.++|.+|++.|+ +..+.|++|+|.+
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~ 103 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 103 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEE
Confidence 35678999999999999999999999999999999876 8999999999999999999887 4689999999999
Q ss_pred cccccCCC
Q 024018 176 AKIKKKNP 183 (274)
Q Consensus 176 ~~~~~~~~ 183 (274)
+..+....
T Consensus 104 a~~k~~~~ 111 (119)
T 2ad9_A 104 SNHKELKT 111 (119)
T ss_dssp CSSSSCCC
T ss_pred ccCCCCCc
Confidence 98765543
No 150
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.78 E-value=1.5e-18 Score=125.52 Aligned_cols=81 Identities=22% Similarity=0.243 Sum_probs=76.2
Q ss_pred CCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCC---eEE
Q 024018 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC---LVI 267 (274)
Q Consensus 191 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g---~~i 267 (274)
..+.++|||+|||..+++++|+++|+. ||.|.++.++.+. +|.++|||||+|.+.++|.+|++.|||..+.| +.|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQP-FGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTT-TSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 345789999999999999999999998 9999999999988 68999999999999999999999999999998 999
Q ss_pred EEEEee
Q 024018 268 ALSYLY 273 (274)
Q Consensus 268 ~v~~a~ 273 (274)
+|.||+
T Consensus 90 ~V~~a~ 95 (105)
T 2dnh_A 90 VVKFAD 95 (105)
T ss_dssp EEEESC
T ss_pred EEEECc
Confidence 999985
No 151
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.78 E-value=7.8e-19 Score=122.76 Aligned_cols=79 Identities=19% Similarity=0.258 Sum_probs=74.9
Q ss_pred ccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCC-CccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 024018 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRR-SAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSYL 272 (274)
Q Consensus 194 ~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~-~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a 272 (274)
.++|||+|||..+++++|+++|+. ||.|.++.++.+..++. ++|||||+|.+.++|.+|++.|||..++|+.|+|+++
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFST-YGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHT-TSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 578999999999999999999998 99999999999987665 8999999999999999999999999999999999998
Q ss_pred e
Q 024018 273 Y 273 (274)
Q Consensus 273 ~ 273 (274)
+
T Consensus 83 ~ 83 (88)
T 4a8x_A 83 L 83 (88)
T ss_dssp C
T ss_pred C
Confidence 5
No 152
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=6e-19 Score=127.07 Aligned_cols=79 Identities=15% Similarity=0.189 Sum_probs=74.5
Q ss_pred CCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 024018 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271 (274)
Q Consensus 192 ~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~ 271 (274)
...++|||+|||..+++++|+++|+. ||.|.+|.++.+.. |.++|||||+|.+.++|.+|+. ++|..++|+.|.|.|
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~-~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLED-KGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILF 85 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHT-SSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhh-cCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 34689999999999999999999999 99999999999987 9999999999999999999999 899999999999998
Q ss_pred ee
Q 024018 272 LY 273 (274)
Q Consensus 272 a~ 273 (274)
+.
T Consensus 86 ~~ 87 (103)
T 1s79_A 86 KD 87 (103)
T ss_dssp HH
T ss_pred ch
Confidence 63
No 153
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.78 E-value=3.6e-19 Score=120.74 Aligned_cols=74 Identities=28% Similarity=0.437 Sum_probs=70.5
Q ss_pred eEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecC-CCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeec
Q 024018 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (274)
Q Consensus 102 ~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 176 (274)
+|||+|||+++++++|+++|+.||.|..+.+..++ +|.++|||||+|.+.++|++|++ ++|..++|+.|+|+++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 49999999999999999999999999999999887 58999999999999999999998 8999999999999875
No 154
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.78 E-value=1.1e-18 Score=130.16 Aligned_cols=85 Identities=25% Similarity=0.417 Sum_probs=78.1
Q ss_pred ccCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecC-CCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEe
Q 024018 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174 (274)
Q Consensus 96 ~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 174 (274)
.....++|||+|||.++++++|+++|+.||.|.+|.+..++ +|.++|||||+|.+.++|.+|+ .|+|..++|+.|+|.
T Consensus 32 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 110 (124)
T 2jwn_A 32 KEIDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVL 110 (124)
T ss_dssp HHHHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEE
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEE
Confidence 34457899999999999999999999999999999999986 5899999999999999999999 699999999999999
Q ss_pred ecccccC
Q 024018 175 YAKIKKK 181 (274)
Q Consensus 175 ~~~~~~~ 181 (274)
+++....
T Consensus 111 ~a~~~~~ 117 (124)
T 2jwn_A 111 PKRTNMP 117 (124)
T ss_dssp ESSCCCS
T ss_pred ECCCCCC
Confidence 9986544
No 155
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.6e-18 Score=124.49 Aligned_cols=83 Identities=23% Similarity=0.450 Sum_probs=75.2
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeec
Q 024018 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (274)
Q Consensus 97 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 176 (274)
....++|||+|||+++++++|+++|+.||.| .++.+.+|+++|||||+|.+.++|.+|++.|+|..++|+.|+|.++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 88 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQ 88 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEc
Confidence 3467899999999999999999999999977 5666667899999999999999999999999999999999999999
Q ss_pred ccccCC
Q 024018 177 KIKKKN 182 (274)
Q Consensus 177 ~~~~~~ 182 (274)
.++...
T Consensus 89 ~~~~~~ 94 (101)
T 2fc9_A 89 GPRGSP 94 (101)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 877543
No 156
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.77 E-value=7.8e-19 Score=127.26 Aligned_cols=82 Identities=20% Similarity=0.214 Sum_probs=77.5
Q ss_pred CCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCcee---CCeEE
Q 024018 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI---MCLVI 267 (274)
Q Consensus 191 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i---~g~~i 267 (274)
..+.++|||+|||..+++++|+++|+. ||.|.++.++.+..+|.++|||||+|.+.++|.+|++.|||..+ .|+.|
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEE-FGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHH-HSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 445789999999999999999999999 99999999999998999999999999999999999999999998 89999
Q ss_pred EEEEee
Q 024018 268 ALSYLY 273 (274)
Q Consensus 268 ~v~~a~ 273 (274)
+|.||+
T Consensus 89 ~v~~a~ 94 (106)
T 2dgp_A 89 QVKPAD 94 (106)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 999985
No 157
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.77 E-value=1.2e-18 Score=119.62 Aligned_cols=72 Identities=18% Similarity=0.207 Sum_probs=68.5
Q ss_pred ccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 024018 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSYL 272 (274)
Q Consensus 194 ~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a 272 (274)
+..|||+||+..+++++|+++|.+ ||.|.++.+.. ++|||||+|.+.++|.+|++.|||..++|+.|+|++|
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q-~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQ-HGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHH-HSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred cceEEEeCCCccCCHHHHHHHHHh-hCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 567999999999999999999999 99999999853 6999999999999999999999999999999999987
No 158
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.77 E-value=6.7e-19 Score=127.46 Aligned_cols=81 Identities=22% Similarity=0.389 Sum_probs=74.8
Q ss_pred CCCCeEEEeCCCCCC------CHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCc-E
Q 024018 98 YSKTRLVAQNVPWTS------THEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGR-T 170 (274)
Q Consensus 98 ~~~~~l~v~nLp~~~------t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~-~ 170 (274)
...++|||+|||+.+ ++++|+++|+.||.|..+.|. ..+|+++|||||+|.+.++|.+|++.|||..++|+ .
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC-CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee-CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 346789999999999 789999999999999999987 45789999999999999999999999999999999 9
Q ss_pred EEEeecccc
Q 024018 171 LKVNYAKIK 179 (274)
Q Consensus 171 i~v~~~~~~ 179 (274)
|+|.++...
T Consensus 92 l~V~~a~~~ 100 (105)
T 2nlw_A 92 FRVNLFTDF 100 (105)
T ss_dssp EEEECSCCC
T ss_pred EEEEEcchH
Confidence 999998754
No 159
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=5.2e-19 Score=126.34 Aligned_cols=81 Identities=15% Similarity=0.187 Sum_probs=76.7
Q ss_pred CCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 024018 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271 (274)
Q Consensus 192 ~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~ 271 (274)
...++|||+|||..+++++|+++|+. ||.|..+.++.++.+|.++|||||+|.+.++|.+|++.|||..++|+.|+|.|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~-~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYG-YQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTT-SCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHH-cCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34688999999999999999999998 99999888999998999999999999999999999999999999999999999
Q ss_pred ee
Q 024018 272 LY 273 (274)
Q Consensus 272 a~ 273 (274)
++
T Consensus 92 a~ 93 (98)
T 2cqp_A 92 GS 93 (98)
T ss_dssp SS
T ss_pred cC
Confidence 85
No 160
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.8e-18 Score=124.70 Aligned_cols=80 Identities=26% Similarity=0.444 Sum_probs=75.8
Q ss_pred CCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 024018 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALS 270 (274)
Q Consensus 191 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~ 270 (274)
..+.++|||+|||..+++++|+++|+. ||.|.++.++.+ +|.++|||||+|.+.++|.+|++.|||..+.|+.|+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSP-FGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 88 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTT-TSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 445789999999999999999999998 999999999988 78999999999999999999999999999999999999
Q ss_pred Eee
Q 024018 271 YLY 273 (274)
Q Consensus 271 ~a~ 273 (274)
||+
T Consensus 89 ~a~ 91 (103)
T 2d9p_A 89 LAQ 91 (103)
T ss_dssp ECS
T ss_pred Eec
Confidence 985
No 161
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=5.9e-19 Score=126.05 Aligned_cols=81 Identities=26% Similarity=0.263 Sum_probs=74.4
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecC-CCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeecc
Q 024018 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (274)
Q Consensus 99 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 177 (274)
..++|||+|||+++++++|+++|+.||.|..+.++.++ +|+++|||||+|.+.++|.+|++.|+|..++|+.|+|.++.
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 93 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGS 93 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcC
Confidence 55789999999999999999999999999877777665 58999999999999999999999999999999999999987
Q ss_pred cc
Q 024018 178 IK 179 (274)
Q Consensus 178 ~~ 179 (274)
..
T Consensus 94 ~~ 95 (98)
T 2cqp_A 94 GP 95 (98)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 162
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.8e-18 Score=126.01 Aligned_cols=84 Identities=18% Similarity=0.360 Sum_probs=77.6
Q ss_pred ccCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCee--------c
Q 024018 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEF--------E 167 (274)
Q Consensus 96 ~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~--------~ 167 (274)
.+...++|||+|||+++++++|+++|+.||.|..+.++.+++|.++|||||+|.+.++|.+|++.|||..+ .
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 34467899999999999999999999999999999999998899999999999999999999999999999 5
Q ss_pred CcEEEEeecccc
Q 024018 168 GRTLKVNYAKIK 179 (274)
Q Consensus 168 g~~i~v~~~~~~ 179 (274)
+++|.|.|+.+.
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 788999998754
No 163
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.77 E-value=9.2e-19 Score=129.02 Aligned_cols=80 Identities=23% Similarity=0.277 Sum_probs=76.1
Q ss_pred CCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 024018 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271 (274)
Q Consensus 192 ~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~ 271 (274)
...++|||+|||..+++++|+++|+. ||.|.++.++.+. +|.++|||||+|.+.++|.+|++.|||..++|+.|+|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGK-HGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHT-SSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34689999999999999999999998 9999999999988 899999999999999999999999999999999999999
Q ss_pred ee
Q 024018 272 LY 273 (274)
Q Consensus 272 a~ 273 (274)
|+
T Consensus 83 a~ 84 (116)
T 2fy1_A 83 AK 84 (116)
T ss_dssp CC
T ss_pred CC
Confidence 85
No 164
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.77 E-value=1.6e-18 Score=129.68 Aligned_cols=85 Identities=22% Similarity=0.350 Sum_probs=79.3
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecC-CCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeec
Q 024018 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (274)
Q Consensus 98 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 176 (274)
...++|||+|||+.+++++|+++|+.||.|..|.|+.++ +|.++|||||+|.+.++|.+|++.|+|..++|+.|.|.++
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 356789999999999999999999999999999999886 6899999999999999999999999999999999999999
Q ss_pred ccccCC
Q 024018 177 KIKKKN 182 (274)
Q Consensus 177 ~~~~~~ 182 (274)
..+...
T Consensus 100 ~~~~~~ 105 (126)
T 3ex7_B 100 FVRGPP 105 (126)
T ss_dssp EESSSC
T ss_pred cCCCCC
Confidence 877554
No 165
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.77 E-value=3.6e-18 Score=132.50 Aligned_cols=86 Identities=20% Similarity=0.331 Sum_probs=79.6
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCC-CCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEee
Q 024018 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (274)
Q Consensus 97 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~-~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 175 (274)
....++|||+|||+.+++++|+++|+.||.|..|.|+.++. +.++|||||+|.+.++|.+|++.|++..|+|+.|+|.+
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34678999999999999999999999999999999999875 88999999999999999999999999999999999999
Q ss_pred cccccCC
Q 024018 176 AKIKKKN 182 (274)
Q Consensus 176 ~~~~~~~ 182 (274)
+......
T Consensus 116 a~~~~~~ 122 (156)
T 1h2v_Z 116 DAGFKEG 122 (156)
T ss_dssp ESCCCTT
T ss_pred CCCCCCc
Confidence 9876543
No 166
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.4e-18 Score=125.28 Aligned_cols=84 Identities=26% Similarity=0.345 Sum_probs=76.4
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCc-eEEEEEe-ecC-CCCceeEEEEEECCHHHHHHHHHHcC--CCeecCcEEEE
Q 024018 99 SKTRLVAQNVPWTSTHEDIRALFEQHGT-VLDIELS-MHS-KNRNRGLAFVTMGSPDEATAALNNLE--SYEFEGRTLKV 173 (274)
Q Consensus 99 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~-v~~v~~~-~~~-~~~~~g~afv~f~~~~~a~~a~~~l~--~~~~~g~~i~v 173 (274)
..++|||+|||+++++++|+++|+.||. |..+.++ .++ +|.++|||||+|.+.++|.+|++.|+ +..+.|+.|+|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 5678999999999999999999999998 9999998 555 37899999999999999999999996 58999999999
Q ss_pred eecccccCC
Q 024018 174 NYAKIKKKN 182 (274)
Q Consensus 174 ~~~~~~~~~ 182 (274)
.++.++...
T Consensus 87 ~~a~~~~~~ 95 (109)
T 2dis_A 87 DWAEPEIDV 95 (109)
T ss_dssp EESCSSCST
T ss_pred EEcCCCCCc
Confidence 999887654
No 167
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.77 E-value=2.5e-18 Score=128.20 Aligned_cols=82 Identities=21% Similarity=0.260 Sum_probs=77.4
Q ss_pred CCCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEE
Q 024018 190 KPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIAL 269 (274)
Q Consensus 190 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v 269 (274)
.....++|||+|||..+++++|+++|+. ||.|.++.++.+. +|.++|||||+|.+.++|.+|++.|||..++|+.|+|
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 108 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAE-FGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDI 108 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHT-TSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 3455789999999999999999999998 9999999999988 8999999999999999999999999999999999999
Q ss_pred EEee
Q 024018 270 SYLY 273 (274)
Q Consensus 270 ~~a~ 273 (274)
+||.
T Consensus 109 ~~a~ 112 (124)
T 2kt5_A 109 QLVA 112 (124)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9985
No 168
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2e-18 Score=122.89 Aligned_cols=78 Identities=19% Similarity=0.142 Sum_probs=73.1
Q ss_pred CCccceEEecCCccccHHHHH----HHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEE
Q 024018 192 FATFNLFIANLSFEARAKDLR----EFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVI 267 (274)
Q Consensus 192 ~~~~~l~V~nlp~~~~~~~l~----~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i 267 (274)
....+|||+|||..+++++|+ ++|++ ||.|.++.++.+..+ +|||||+|.+.++|.+|++.|||..++|+.|
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~-~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l 82 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFAR-HGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKI 82 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHH-HSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccc-cCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 346889999999999999999 99999 999999999988764 8999999999999999999999999999999
Q ss_pred EEEEee
Q 024018 268 ALSYLY 273 (274)
Q Consensus 268 ~v~~a~ 273 (274)
+|+||+
T Consensus 83 ~V~~a~ 88 (96)
T 2dgx_A 83 LVSLAT 88 (96)
T ss_dssp EEEECC
T ss_pred EEEEcC
Confidence 999985
No 169
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.1e-18 Score=127.93 Aligned_cols=83 Identities=18% Similarity=0.241 Sum_probs=77.7
Q ss_pred CCCCccceEEecCCccccHHHHHHHHhhcCCceE--------EEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCce
Q 024018 190 KPFATFNLFIANLSFEARAKDLREFFISEGWDVV--------SAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKV 261 (274)
Q Consensus 190 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~--------~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~ 261 (274)
...+.++|||+|||..+++++|+++|+. ||.|. .+.++.+..+|.++|||||+|.+.++|.+|++.|||..
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQ-CGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTT-TSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHh-cCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 3445789999999999999999999999 99998 69999998899999999999999999999999999999
Q ss_pred eCCeEEEEEEee
Q 024018 262 IMCLVIALSYLY 273 (274)
Q Consensus 262 i~g~~i~v~~a~ 273 (274)
|.|+.|+|.||+
T Consensus 90 ~~g~~l~V~~a~ 101 (113)
T 2cpe_A 90 FQGSKLKVSLAR 101 (113)
T ss_dssp ETTEECEEECSS
T ss_pred cCCCEEEEEECC
Confidence 999999999985
No 170
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.77 E-value=4.9e-19 Score=125.68 Aligned_cols=80 Identities=16% Similarity=0.213 Sum_probs=75.7
Q ss_pred CccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 024018 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSYL 272 (274)
Q Consensus 193 ~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a 272 (274)
+.++|||+|||..+++++|+++|++ ||.|..+.++.++.+|.++|||||+|.+.++|.+|++.|||..++|+.|+|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYG-YQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTT-SCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 3589999999999999999999999 999999999999989999999999999999999999999999999999999987
Q ss_pred e
Q 024018 273 Y 273 (274)
Q Consensus 273 ~ 273 (274)
.
T Consensus 93 ~ 93 (95)
T 2ek1_A 93 S 93 (95)
T ss_dssp C
T ss_pred c
Confidence 4
No 171
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=8.1e-19 Score=128.92 Aligned_cols=79 Identities=25% Similarity=0.381 Sum_probs=75.6
Q ss_pred CccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 024018 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSYL 272 (274)
Q Consensus 193 ~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a 272 (274)
..++|||+|||..+++++|+++|+. ||.|.++.++.+..+|.++|||||+|.+.++|.+|+ .|||..|+|+.|+|.||
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSA-VGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTT-TSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-CCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 4578999999999999999999998 999999999999999999999999999999999999 89999999999999997
Q ss_pred e
Q 024018 273 Y 273 (274)
Q Consensus 273 ~ 273 (274)
+
T Consensus 102 ~ 102 (114)
T 2cq4_A 102 Q 102 (114)
T ss_dssp H
T ss_pred C
Confidence 4
No 172
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=5.6e-19 Score=127.55 Aligned_cols=80 Identities=20% Similarity=0.444 Sum_probs=76.7
Q ss_pred CccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 024018 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSYL 272 (274)
Q Consensus 193 ~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a 272 (274)
+.++|||+|||..+++++|+++|+. ||.|.++.++.+..+|.++|||||+|.+.++|.+|++.|||..++|+.|+|.||
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~-~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSE-VGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHT-TSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHh-cCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 4688999999999999999999998 999999999999889999999999999999999999999999999999999998
Q ss_pred e
Q 024018 273 Y 273 (274)
Q Consensus 273 ~ 273 (274)
+
T Consensus 86 ~ 86 (104)
T 1p1t_A 86 A 86 (104)
T ss_dssp T
T ss_pred C
Confidence 5
No 173
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.77 E-value=2.6e-18 Score=130.73 Aligned_cols=80 Identities=29% Similarity=0.479 Sum_probs=74.6
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecC-CCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEee
Q 024018 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (274)
Q Consensus 97 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 175 (274)
....++|||+|||+.+++++|+++|+.||.|..+.+..++ +|+++|||||+|.+.++|.+|++.|+|..++|+.|+|.+
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 4467899999999999999999999999999999999885 589999999999999999999999999999999999987
Q ss_pred c
Q 024018 176 A 176 (274)
Q Consensus 176 ~ 176 (274)
|
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 5
No 174
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.8e-18 Score=124.92 Aligned_cols=80 Identities=15% Similarity=0.310 Sum_probs=75.4
Q ss_pred CCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCC-CCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEE
Q 024018 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNP-RRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIAL 269 (274)
Q Consensus 191 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v 269 (274)
..+.++|||+|||..+++++|+++|+. || |.++.++.+..+ |.++|||||+|.+.++|.+|+ .|+|..++|+.|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRG-LN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRV 88 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTT-SC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHH-CC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEE
Confidence 345689999999999999999999999 89 999999999887 899999999999999999999 89999999999999
Q ss_pred EEee
Q 024018 270 SYLY 273 (274)
Q Consensus 270 ~~a~ 273 (274)
.||+
T Consensus 89 ~~a~ 92 (104)
T 1wi8_A 89 DVAD 92 (104)
T ss_dssp EECC
T ss_pred EEcc
Confidence 9985
No 175
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.77 E-value=9.7e-19 Score=125.64 Aligned_cols=78 Identities=24% Similarity=0.479 Sum_probs=72.1
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeec
Q 024018 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (274)
Q Consensus 97 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 176 (274)
....++|||+|||.++++++|+++|+.||.|.++.+.+ ++|||||+|.+.++|.+|++.|+|..++|+.|+|.|+
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP-----EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec-----CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 34568999999999999999999999999999999973 4899999999999999999999999999999999998
Q ss_pred ccc
Q 024018 177 KIK 179 (274)
Q Consensus 177 ~~~ 179 (274)
+++
T Consensus 99 ~~~ 101 (101)
T 2la4_A 99 KER 101 (101)
T ss_dssp CCC
T ss_pred cCC
Confidence 753
No 176
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=2.4e-18 Score=119.53 Aligned_cols=76 Identities=24% Similarity=0.338 Sum_probs=70.9
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHc-CCCeecCcEEEEee
Q 024018 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNL-ESYEFEGRTLKVNY 175 (274)
Q Consensus 97 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l-~~~~~~g~~i~v~~ 175 (274)
....++|||+|||..+++++|+++|++||.|..+.+.++ +|||||+|.+.++|.+|++.| +|..++|+.|+|.|
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~-----kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ 83 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR-----QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKW 83 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG-----GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC-----CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEe
Confidence 346688999999999999999999999999999999865 899999999999999999998 99999999999999
Q ss_pred cc
Q 024018 176 AK 177 (274)
Q Consensus 176 ~~ 177 (274)
++
T Consensus 84 ak 85 (85)
T 2ytc_A 84 GR 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 177
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=3.4e-18 Score=120.12 Aligned_cols=79 Identities=32% Similarity=0.538 Sum_probs=73.4
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeecc
Q 024018 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (274)
Q Consensus 98 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 177 (274)
...++|||+|||+++++++|+++|+.||.|..+.+. +|||||+|.+.++|.+|++.|+|..++|+.|+|.++.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 78 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASK 78 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECC
Confidence 356889999999999999999999999999999997 7899999999999999999999999999999999998
Q ss_pred cccCCC
Q 024018 178 IKKKNP 183 (274)
Q Consensus 178 ~~~~~~ 183 (274)
.+....
T Consensus 79 ~~~~~~ 84 (90)
T 2dnq_A 79 NKSKAS 84 (90)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 876543
No 178
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=8e-19 Score=127.54 Aligned_cols=79 Identities=22% Similarity=0.316 Sum_probs=73.6
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeeccc
Q 024018 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178 (274)
Q Consensus 99 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 178 (274)
...+|||+|||+++++++|+++|+.| .|.+|.|+.+++|+++|||||+|.+.++|.+|+. +++..++||.|.|..+..
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALK-RNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHH-TTTEEETTEEEEEEECCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEECCc
Confidence 34689999999999999999999999 8999999999889999999999999999999995 899999999999988865
Q ss_pred c
Q 024018 179 K 179 (274)
Q Consensus 179 ~ 179 (274)
+
T Consensus 93 ~ 93 (109)
T 2dnn_A 93 R 93 (109)
T ss_dssp H
T ss_pred c
Confidence 4
No 179
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.77 E-value=6.6e-19 Score=125.04 Aligned_cols=79 Identities=27% Similarity=0.288 Sum_probs=72.9
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecC-CCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeecc
Q 024018 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (274)
Q Consensus 99 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 177 (274)
..++|||+|||+++++++|+++|+.||.|..+.++.++ +|+++|||||+|.+.++|.+|++.|||..++|+.|+|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 45789999999999999999999999999888777765 58999999999999999999999999999999999999875
No 180
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.1e-18 Score=125.60 Aligned_cols=81 Identities=16% Similarity=0.281 Sum_probs=74.7
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeecc
Q 024018 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (274)
Q Consensus 98 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 177 (274)
...++|||+|||+++|+++|+++|+.||.+ .|.|+.+++|+++|||||+|.+.++|.+|++ +++..++||.|+|.++.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 456789999999999999999999999955 9999999999999999999999999999996 79999999999999987
Q ss_pred ccc
Q 024018 178 IKK 180 (274)
Q Consensus 178 ~~~ 180 (274)
...
T Consensus 91 ~~~ 93 (102)
T 1wez_A 91 TAG 93 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 181
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.77 E-value=3.7e-19 Score=120.68 Aligned_cols=75 Identities=23% Similarity=0.421 Sum_probs=72.2
Q ss_pred ceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 024018 196 NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSYL 272 (274)
Q Consensus 196 ~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a 272 (274)
+|||+|||..+++++|+++|+. ||.|.++.++.++.+|.++|||||+|.+.++|.+|++ |+|..++|+.|+|.||
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQ-FGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHT-TSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHh-cCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 4899999999999999999999 9999999999998889999999999999999999998 8999999999999986
No 182
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.77 E-value=5.9e-19 Score=121.55 Aligned_cols=72 Identities=24% Similarity=0.487 Sum_probs=67.4
Q ss_pred CeEEEeCCCCCC------CHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCc-EEEE
Q 024018 101 TRLVAQNVPWTS------THEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGR-TLKV 173 (274)
Q Consensus 101 ~~l~v~nLp~~~------t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~-~i~v 173 (274)
++|||+|||..+ ++++|+++|++||.|..+.+. ..+|+++|||||+|.+.++|.+|++.|||..++|+ .|+|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC-CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec-CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 689999999999 779999999999999999987 45789999999999999999999999999999999 8876
No 183
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.8e-18 Score=127.50 Aligned_cols=82 Identities=26% Similarity=0.380 Sum_probs=77.2
Q ss_pred CCCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEE
Q 024018 190 KPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIAL 269 (274)
Q Consensus 190 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v 269 (274)
...+.++|||+|||..+++++|+++|+. ||.|.++.++.+..++.++|||||+|.+.++|.+|++.|++ .+.|+.|+|
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V 90 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEG-FGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANV 90 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHT-TSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh-CCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEE
Confidence 3445789999999999999999999998 99999999999988999999999999999999999999998 899999999
Q ss_pred EEee
Q 024018 270 SYLY 273 (274)
Q Consensus 270 ~~a~ 273 (274)
.||+
T Consensus 91 ~~a~ 94 (116)
T 2cqd_A 91 NLAY 94 (116)
T ss_dssp EEST
T ss_pred EEcc
Confidence 9984
No 184
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=8.9e-19 Score=125.65 Aligned_cols=76 Identities=11% Similarity=0.156 Sum_probs=69.5
Q ss_pred CCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCC--ceeCCeEEE
Q 024018 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG--KVIMCLVIA 268 (274)
Q Consensus 191 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g--~~i~g~~i~ 268 (274)
..+..+|||+|||+.+++++|+++|++ ||.|.++.++++ +|||||+|++.++|.+|++.|++ ..++|+.|+
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~-fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLP-FGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 85 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHH-HCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 445789999999999999999999999 999999999853 79999999999999999998864 789999999
Q ss_pred EEEee
Q 024018 269 LSYLY 273 (274)
Q Consensus 269 v~~a~ 273 (274)
|.||+
T Consensus 86 V~~A~ 90 (105)
T 1sjq_A 86 IQFSN 90 (105)
T ss_dssp BCCCS
T ss_pred EEEcC
Confidence 99985
No 185
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.76 E-value=2e-18 Score=121.80 Aligned_cols=79 Identities=27% Similarity=0.331 Sum_probs=74.4
Q ss_pred CCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 024018 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271 (274)
Q Consensus 192 ~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~ 271 (274)
.+.++|||+|||..+++++|+++|+. ||.|.++.+..+ +|.++|||||+|.+.++|.+|++.|||..++|+.|+|+|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~-~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNE-CGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHT-TSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 44789999999999999999999999 999999999874 688999999999999999999999999999999999999
Q ss_pred ee
Q 024018 272 LY 273 (274)
Q Consensus 272 a~ 273 (274)
++
T Consensus 83 a~ 84 (92)
T 2dgv_A 83 DR 84 (92)
T ss_dssp CS
T ss_pred cC
Confidence 85
No 186
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.76 E-value=1.6e-18 Score=129.57 Aligned_cols=82 Identities=18% Similarity=0.357 Sum_probs=77.9
Q ss_pred CCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 024018 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALS 270 (274)
Q Consensus 191 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~ 270 (274)
..+.++|||+|||..+++++|+++|+. ||.|.++.++.+..+|.++|||||+|.+.++|.+|++.|||..|+|+.|.|.
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAE-YGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHT-TSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 445789999999999999999999998 9999999999998899999999999999999999999999999999999999
Q ss_pred Eee
Q 024018 271 YLY 273 (274)
Q Consensus 271 ~a~ 273 (274)
||+
T Consensus 98 ~a~ 100 (126)
T 3ex7_B 98 WCF 100 (126)
T ss_dssp ESE
T ss_pred Eec
Confidence 985
No 187
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.76 E-value=2.7e-18 Score=133.41 Aligned_cols=85 Identities=25% Similarity=0.469 Sum_probs=79.4
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecC-CCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeec
Q 024018 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (274)
Q Consensus 98 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 176 (274)
...++|||+|||+++++++|+++|+.||.|..+.+..++ +|.++|||||+|.+.++|.+|++.|||..++|+.|+|.++
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 456889999999999999999999999999999999986 5999999999999999999999999999999999999999
Q ss_pred ccccCC
Q 024018 177 KIKKKN 182 (274)
Q Consensus 177 ~~~~~~ 182 (274)
.++...
T Consensus 148 ~~~~~~ 153 (158)
T 2kn4_A 148 RYGRPP 153 (158)
T ss_dssp CCSSCC
T ss_pred CCCCCC
Confidence 876544
No 188
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.9e-19 Score=125.19 Aligned_cols=80 Identities=24% Similarity=0.351 Sum_probs=76.2
Q ss_pred CccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 024018 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSYL 272 (274)
Q Consensus 193 ~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a 272 (274)
+.++|||+|||..+++++|+++|+. ||.|.++.++.++.+|.++|||||+|.+.++|.+|++.|||..++|+.|+++|+
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~-~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQP-YGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTT-TSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 4789999999999999999999998 999999999999889999999999999999999999999999999999998876
Q ss_pred e
Q 024018 273 Y 273 (274)
Q Consensus 273 ~ 273 (274)
+
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 189
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.76 E-value=1.3e-19 Score=162.56 Aligned_cols=152 Identities=15% Similarity=0.200 Sum_probs=107.2
Q ss_pred HHHHHHhccCceEEEEEee----cC--CCCceeEE--EEEECCHHHHHHHHHHcCCCeecCcEE-------------EEe
Q 024018 116 DIRALFEQHGTVLDIELSM----HS--KNRNRGLA--FVTMGSPDEATAALNNLESYEFEGRTL-------------KVN 174 (274)
Q Consensus 116 ~L~~~f~~~G~v~~v~~~~----~~--~~~~~g~a--fv~f~~~~~a~~a~~~l~~~~~~g~~i-------------~v~ 174 (274)
.|..+|..+|+|..+..+. +. .....|++ |+.|....++..++..++.....++.. .+.
T Consensus 8 ~L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~~~~~~~~~~ 87 (437)
T 3pgw_S 8 NLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVETELK 87 (437)
T ss_pred cHHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3788999999988763221 11 11123333 777877655554443322222111100 000
Q ss_pred ecccccCCCCCCCCCCCCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHH
Q 024018 175 YAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAI 254 (274)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~ 254 (274)
.+.+ .........+..+|||+|||..+++++|+++|+. ||.|..|.|+.+..+|.++|||||+|.+.++|.+||
T Consensus 88 ~~~p-----~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~-~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai 161 (437)
T 3pgw_S 88 MWDP-----HNDPNAQGDAFKTLFVARVNYDTTESKLRREFEV-YGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAY 161 (437)
T ss_pred hcCC-----cccccccCCCCCEEEEeCCCCCCCHHHHHHHHHH-cCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHH
Confidence 0110 1111122344689999999999999999999998 999999999999889999999999999999999999
Q ss_pred HHhCCceeCCeEEEEEEee
Q 024018 255 SAFQGKVIMCLVIALSYLY 273 (274)
Q Consensus 255 ~~l~g~~i~g~~i~v~~a~ 273 (274)
..|||..|.|+.|.|.||+
T Consensus 162 ~~lng~~i~gr~i~V~~a~ 180 (437)
T 3pgw_S 162 KHADGKKIDGRRVLVDVER 180 (437)
T ss_pred HHcCCCEECCEEEEEEEeC
Confidence 9999999999999999985
No 190
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=3.9e-18 Score=119.81 Aligned_cols=79 Identities=27% Similarity=0.477 Sum_probs=72.9
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeec
Q 024018 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (274)
Q Consensus 97 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 176 (274)
....++|||+|||+++++++|+++|+.||.|..+.+. ++||||+|.+.++|.+|++.|+|..++|+.|+|.++
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV-------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC-------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 3466889999999999999999999999999999997 559999999999999999999999999999999999
Q ss_pred ccccCC
Q 024018 177 KIKKKN 182 (274)
Q Consensus 177 ~~~~~~ 182 (274)
......
T Consensus 79 ~~~~~~ 84 (90)
T 2dnp_A 79 TKGQKK 84 (90)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 877544
No 191
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.76 E-value=1.7e-18 Score=125.91 Aligned_cols=79 Identities=25% Similarity=0.513 Sum_probs=72.8
Q ss_pred ccCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEee
Q 024018 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (274)
Q Consensus 96 ~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 175 (274)
.+...++|||+|||+++++++|+++|+.||.|..+.+. +|||||+|.+.++|.+|++.|+|..++|+.|+|.+
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 45577899999999999999999999999999999997 79999999999999999999999999999999999
Q ss_pred cccccC
Q 024018 176 AKIKKK 181 (274)
Q Consensus 176 ~~~~~~ 181 (274)
+..+..
T Consensus 100 a~~~~~ 105 (108)
T 2jvo_A 100 SKLPAK 105 (108)
T ss_dssp CSCCC-
T ss_pred ecCCCC
Confidence 987654
No 192
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=6.6e-18 Score=121.71 Aligned_cols=80 Identities=28% Similarity=0.454 Sum_probs=74.5
Q ss_pred CCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 024018 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALS 270 (274)
Q Consensus 191 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~ 270 (274)
..+.++|||+|||..+++++|+++|+. ||.|.++.++.+.. .++|||||+|.+.++|.+|++.|||..|+|+.|+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~-~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQ-FGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 88 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGG-TSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 445789999999999999999999998 99999999998864 389999999999999999999999999999999999
Q ss_pred Eee
Q 024018 271 YLY 273 (274)
Q Consensus 271 ~a~ 273 (274)
||+
T Consensus 89 ~a~ 91 (103)
T 2cq3_A 89 NAT 91 (103)
T ss_dssp ECC
T ss_pred Ecc
Confidence 985
No 193
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.76 E-value=2.7e-18 Score=121.90 Aligned_cols=76 Identities=17% Similarity=0.002 Sum_probs=69.7
Q ss_pred CCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCce--eCCeEEE
Q 024018 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKV--IMCLVIA 268 (274)
Q Consensus 191 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~--i~g~~i~ 268 (274)
..++++|||+|||..+++++|+++|++ ||.|.++.+++ .+|+|||+|++.++|.+|++.|+|.. ++|++|+
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~-fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~ 90 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQE-FGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAF 90 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhc-cCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEE
Confidence 345789999999999999999999999 99999998873 47999999999999999999999875 7899999
Q ss_pred EEEee
Q 024018 269 LSYLY 273 (274)
Q Consensus 269 v~~a~ 273 (274)
|.||+
T Consensus 91 V~~S~ 95 (100)
T 3r27_A 91 VNYST 95 (100)
T ss_dssp EEECS
T ss_pred EEecc
Confidence 99985
No 194
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=4.9e-18 Score=124.67 Aligned_cols=81 Identities=27% Similarity=0.356 Sum_probs=76.1
Q ss_pred CCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 024018 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALS 270 (274)
Q Consensus 191 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~ 270 (274)
..+.++|||+|||..+++++|+++|+. ||.|.++.++.+.. |.++|||||+|.+.++|.+|++.|||..++|+.|+|.
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~-~G~i~~~~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSM-AGVVVRADILEDKD-GKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTT-TSCEEEEEEEECTT-CSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEECCC-CCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 344789999999999999999999998 99999999999874 8999999999999999999999999999999999999
Q ss_pred Eee
Q 024018 271 YLY 273 (274)
Q Consensus 271 ~a~ 273 (274)
|++
T Consensus 90 ~a~ 92 (114)
T 2do0_A 90 MDE 92 (114)
T ss_dssp ECS
T ss_pred Ecc
Confidence 985
No 195
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.76 E-value=2.4e-18 Score=128.46 Aligned_cols=81 Identities=21% Similarity=0.451 Sum_probs=73.1
Q ss_pred CCCeEEEeCCCCCCCHHHHH----HHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEe
Q 024018 99 SKTRLVAQNVPWTSTHEDIR----ALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174 (274)
Q Consensus 99 ~~~~l~v~nLp~~~t~~~L~----~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 174 (274)
..++|||+|||+.+++++|+ ++|++||.|.+|.+. .+|+++|||||+|.+.++|.+|++.|||..+.|+.|+|.
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~--~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~ 105 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVD--LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVIT 105 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEEC--CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEec--cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEE
Confidence 45789999999999999876 699999999998774 357889999999999999999999999999999999999
Q ss_pred ecccccC
Q 024018 175 YAKIKKK 181 (274)
Q Consensus 175 ~~~~~~~ 181 (274)
|+..+..
T Consensus 106 ~a~~~~~ 112 (127)
T 2a3j_A 106 FSETPQS 112 (127)
T ss_dssp ECCCCCH
T ss_pred EccCcch
Confidence 9987643
No 196
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=6.2e-18 Score=121.84 Aligned_cols=80 Identities=20% Similarity=0.271 Sum_probs=74.3
Q ss_pred CCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 024018 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALS 270 (274)
Q Consensus 191 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~ 270 (274)
..+.++|||+|||..+++++|+++|+. ||.|.++.++.+.. .++|||||+|.+.++|.+|++.|+|..+.|+.|+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQ-IGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 88 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHH-HSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHh-cCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEE
Confidence 345789999999999999999999999 99999999998864 368999999999999999999999999999999999
Q ss_pred Eee
Q 024018 271 YLY 273 (274)
Q Consensus 271 ~a~ 273 (274)
||+
T Consensus 89 ~a~ 91 (103)
T 2cqi_A 89 WAT 91 (103)
T ss_dssp ECC
T ss_pred ECC
Confidence 985
No 197
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=5e-18 Score=123.67 Aligned_cols=82 Identities=17% Similarity=0.311 Sum_probs=76.1
Q ss_pred ccCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEee
Q 024018 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (274)
Q Consensus 96 ~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 175 (274)
.....++|||+|||..+++++|+++|+.||.|..|.+..+ +|||||+|.+.++|.+|++.|+|..++|+.|+|.+
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 4556789999999999999999999999999999999876 89999999999999999999999999999999999
Q ss_pred cccccCC
Q 024018 176 AKIKKKN 182 (274)
Q Consensus 176 ~~~~~~~ 182 (274)
++.+...
T Consensus 96 a~~~~~~ 102 (109)
T 1x4g_A 96 GKESPDM 102 (109)
T ss_dssp CCCCCSS
T ss_pred cCCCCCC
Confidence 9887554
No 198
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=1.6e-18 Score=125.20 Aligned_cols=82 Identities=26% Similarity=0.391 Sum_probs=76.6
Q ss_pred CCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCce-eCCeEEEE
Q 024018 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKV-IMCLVIAL 269 (274)
Q Consensus 191 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~-i~g~~i~v 269 (274)
..+.++|||+|||..+++++|+++|+..||.|.++.++.+. +|.++|||||+|.+.++|.+|++.|+|.. ++|+.|+|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 34578999999999999999999999648999999999998 89999999999999999999999999999 99999999
Q ss_pred EEee
Q 024018 270 SYLY 273 (274)
Q Consensus 270 ~~a~ 273 (274)
.||+
T Consensus 85 ~~a~ 88 (104)
T 2dhg_A 85 SVAI 88 (104)
T ss_dssp CBCC
T ss_pred EEcc
Confidence 9874
No 199
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.3e-19 Score=123.94 Aligned_cols=79 Identities=19% Similarity=0.319 Sum_probs=73.7
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecC-CCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeecc
Q 024018 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (274)
Q Consensus 99 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 177 (274)
..++|||+|||+++++++|+++|+.||.|..+.+..++ +|.++|||||+|.+.++|.+|++.|||..++|+.|++.++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 56789999999999999999999999999999999886 48999999999999999999999999999999999887654
No 200
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.76 E-value=4.6e-18 Score=121.20 Aligned_cols=76 Identities=20% Similarity=0.384 Sum_probs=71.0
Q ss_pred cCCCCeEEEeCCCC-CCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEee
Q 024018 97 EYSKTRLVAQNVPW-TSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (274)
Q Consensus 97 ~~~~~~l~v~nLp~-~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 175 (274)
....++|||+|||+ ++++++|+++|+.||.|..+.+. +|||||+|.+.++|.+|++.|+|..++|+.|+|.+
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 91 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEV 91 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34678899999998 99999999999999999999983 89999999999999999999999999999999999
Q ss_pred cccc
Q 024018 176 AKIK 179 (274)
Q Consensus 176 ~~~~ 179 (274)
++.+
T Consensus 92 a~~~ 95 (97)
T 2xnq_A 92 SSSN 95 (97)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8765
No 201
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=6.3e-19 Score=120.09 Aligned_cols=75 Identities=24% Similarity=0.444 Sum_probs=71.2
Q ss_pred CeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecC-CCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeec
Q 024018 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (274)
Q Consensus 101 ~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 176 (274)
++|||+|||+++++++|+++|++||.|..+.+..++ +|.++|||||+|.+.++|.+|++.++ ..++|+.|+|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999987 48999999999999999999999988 9999999999986
No 202
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.76 E-value=3.3e-18 Score=130.13 Aligned_cols=83 Identities=19% Similarity=0.274 Sum_probs=77.5
Q ss_pred CCCCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEE
Q 024018 189 PKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIA 268 (274)
Q Consensus 189 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~ 268 (274)
....+.++|||+|||..+++++|+++|++ ||.|.++.++.++.+|.++|||||+|.+.++|.+|++.|||..++|+.|+
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 136 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIP-FGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 136 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGG-GSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHh-cCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34455789999999999999999999999 99999999999988999999999999999999999999999999999999
Q ss_pred EEEe
Q 024018 269 LSYL 272 (274)
Q Consensus 269 v~~a 272 (274)
|+||
T Consensus 137 v~~A 140 (140)
T 2ku7_A 137 VNLA 140 (140)
T ss_dssp EEC-
T ss_pred EEeC
Confidence 9987
No 203
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=5.8e-18 Score=119.44 Aligned_cols=80 Identities=28% Similarity=0.522 Sum_probs=73.4
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeec
Q 024018 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (274)
Q Consensus 97 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 176 (274)
....++|||+|||+++++++|+++|+.||.|..+.+. ++||||+|.+.++|.+|++.|||..+.|+.|+|.++
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC-------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE-------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 4467889999999999999999999999999999997 559999999999999999999999999999999999
Q ss_pred ccccCCC
Q 024018 177 KIKKKNP 183 (274)
Q Consensus 177 ~~~~~~~ 183 (274)
..+....
T Consensus 80 ~~~~~~~ 86 (92)
T 2dgt_A 80 TSRLRTA 86 (92)
T ss_dssp SCCCSCC
T ss_pred cCCCCCC
Confidence 8775543
No 204
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.76 E-value=2.9e-19 Score=125.59 Aligned_cols=81 Identities=28% Similarity=0.549 Sum_probs=72.2
Q ss_pred CeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCC-CCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeecccc
Q 024018 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179 (274)
Q Consensus 101 ~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~-~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 179 (274)
++|||+|||.++++++|+++|+.||.|.++.+..++. |.++|||||+|.+.+ |.+|+..|+|..++|+.|+|.++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 5799999999999999999999999999999998875 899999999999999 99999999999999999999999876
Q ss_pred cCC
Q 024018 180 KKN 182 (274)
Q Consensus 180 ~~~ 182 (274)
...
T Consensus 81 ~~~ 83 (90)
T 2ki2_A 81 KSL 83 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 543
No 205
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=1.2e-18 Score=126.70 Aligned_cols=82 Identities=22% Similarity=0.291 Sum_probs=72.7
Q ss_pred cCCCCeEEEeCCCCC-CCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcC--CCeecCcEEEE
Q 024018 97 EYSKTRLVAQNVPWT-STHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLE--SYEFEGRTLKV 173 (274)
Q Consensus 97 ~~~~~~l~v~nLp~~-~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~--~~~~~g~~i~v 173 (274)
....++|||+|||++ +++++|+++|++||.|.+|.|.+. +|||||+|.+.++|.+|++.|+ +..++||.|+|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 96 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM-----KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKV 96 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT-----TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 445789999999998 999999999999999999999753 8999999999999999999886 46699999999
Q ss_pred eecccccCCC
Q 024018 174 NYAKIKKKNP 183 (274)
Q Consensus 174 ~~~~~~~~~~ 183 (274)
.++..+....
T Consensus 97 ~~a~~~~~~~ 106 (112)
T 1x4f_A 97 DLSEKYKKLV 106 (112)
T ss_dssp EEECSCSSSS
T ss_pred EECccccccc
Confidence 9998765543
No 206
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=2.9e-18 Score=122.68 Aligned_cols=81 Identities=25% Similarity=0.409 Sum_probs=74.5
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeec
Q 024018 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (274)
Q Consensus 97 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 176 (274)
....++|||+|||+.+++++|+++|+.||.|..+.+.++ +|||||+|.+.++|.+|++.|+|..++|+.|+|.++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~-----kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-----KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFA 86 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT-----TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC-----CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEc
Confidence 346688999999999999999999999999999999855 899999999999999999999999999999999999
Q ss_pred ccccCC
Q 024018 177 KIKKKN 182 (274)
Q Consensus 177 ~~~~~~ 182 (274)
..+...
T Consensus 87 ~~~~~~ 92 (99)
T 2cpj_A 87 CHSASL 92 (99)
T ss_dssp SCCSCC
T ss_pred CCCCCC
Confidence 876543
No 207
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.76 E-value=5.1e-18 Score=131.65 Aligned_cols=81 Identities=21% Similarity=0.321 Sum_probs=77.7
Q ss_pred CCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 024018 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271 (274)
Q Consensus 192 ~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~ 271 (274)
.+.++|||+|||..+++++|+++|+. ||.|..|.|+.+..++.++|||||+|.+.++|.+|++.|||..|+|+.|+|.|
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSK-SGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45789999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred ee
Q 024018 272 LY 273 (274)
Q Consensus 272 a~ 273 (274)
|+
T Consensus 116 a~ 117 (156)
T 1h2v_Z 116 DA 117 (156)
T ss_dssp ES
T ss_pred CC
Confidence 85
No 208
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=4.5e-18 Score=119.76 Aligned_cols=78 Identities=15% Similarity=0.216 Sum_probs=73.6
Q ss_pred CCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 024018 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271 (274)
Q Consensus 192 ~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~ 271 (274)
...++|||+|||..+++++|+++|+. | .|.++.++.+ .+|.++|||||+|.+.++|.+|++ |||..++|+.|+|.+
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~-~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAP-L-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTT-S-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhh-C-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 34689999999999999999999999 7 8999999999 679999999999999999999999 999999999999999
Q ss_pred ee
Q 024018 272 LY 273 (274)
Q Consensus 272 a~ 273 (274)
|.
T Consensus 84 a~ 85 (91)
T 2dgw_A 84 EK 85 (91)
T ss_dssp ES
T ss_pred CC
Confidence 85
No 209
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=4.6e-18 Score=121.18 Aligned_cols=78 Identities=22% Similarity=0.348 Sum_probs=72.4
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeec--CcEEEEeec
Q 024018 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFE--GRTLKVNYA 176 (274)
Q Consensus 99 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~--g~~i~v~~~ 176 (274)
..++|||+|||+++++++|+++|+.||.|.++.+..+ +|||||+|.+.++|.+|++.|||..+. |+.|+|.++
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a 90 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFA 90 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEEC
Confidence 4578999999999999999999999999999998754 789999999999999999999999999 999999999
Q ss_pred ccccC
Q 024018 177 KIKKK 181 (274)
Q Consensus 177 ~~~~~ 181 (274)
.++..
T Consensus 91 ~~~~~ 95 (97)
T 1why_A 91 KSGPS 95 (97)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87643
No 210
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.76 E-value=4.1e-19 Score=129.06 Aligned_cols=83 Identities=22% Similarity=0.304 Sum_probs=77.2
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhccCc---eEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEE
Q 024018 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGT---VLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKV 173 (274)
Q Consensus 97 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~---v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v 173 (274)
....++|||+|||+++|+++|+++|+.||. |..|.|+.++.|+++|||||+|.+.++|.+|++ ++|..++||.|+|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEV 86 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEE
Confidence 346788999999999999999999999998 899999999889999999999999999999999 9999999999999
Q ss_pred eeccccc
Q 024018 174 NYAKIKK 180 (274)
Q Consensus 174 ~~~~~~~ 180 (274)
.++..+.
T Consensus 87 ~~a~~~~ 93 (107)
T 2lmi_A 87 YEINNED 93 (107)
T ss_dssp EECCHHH
T ss_pred EECCHHH
Confidence 9987653
No 211
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.6e-18 Score=129.27 Aligned_cols=81 Identities=17% Similarity=0.249 Sum_probs=73.6
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHhccCceEE-EEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeec
Q 024018 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (274)
Q Consensus 98 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~-v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 176 (274)
...++|||+|||+++++++|+++|+.||.|.. +.+..+.+|+++|||||+|.+.++|.+||+ |||..|+|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 45688999999999999999999999999987 445555679999999999999999999999 9999999999999998
Q ss_pred ccc
Q 024018 177 KIK 179 (274)
Q Consensus 177 ~~~ 179 (274)
..+
T Consensus 102 ~~~ 104 (124)
T 1wel_A 102 TKK 104 (124)
T ss_dssp CHH
T ss_pred CHH
Confidence 765
No 212
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.75 E-value=3.1e-18 Score=124.76 Aligned_cols=81 Identities=22% Similarity=0.342 Sum_probs=73.8
Q ss_pred CCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 024018 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALS 270 (274)
Q Consensus 191 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~ 270 (274)
..+.++|||+|||..+++++|+++|+. ||.|.++.++.+..+|.++|||||+|.+.++|.+|++.+ |..++|+.|+|.
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~-~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~ 99 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQ-FGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPK 99 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTT-TSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHc-cCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEE
Confidence 344689999999999999999999998 999999999999999999999999999999999999975 699999999999
Q ss_pred Eee
Q 024018 271 YLY 273 (274)
Q Consensus 271 ~a~ 273 (274)
+|+
T Consensus 100 ~a~ 102 (109)
T 2rs2_A 100 VAF 102 (109)
T ss_dssp ECC
T ss_pred Ecc
Confidence 985
No 213
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.75 E-value=3.7e-18 Score=127.26 Aligned_cols=78 Identities=17% Similarity=0.333 Sum_probs=75.2
Q ss_pred ccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEee
Q 024018 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSYLY 273 (274)
Q Consensus 194 ~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a~ 273 (274)
.++|||+|||..+++++|+++|+. ||.|.++.++.+..+|.++|||||+|.+.++|.+|+ .|||..++|+.|+|.|++
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSS-CGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHT-TSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 578999999999999999999999 999999999999889999999999999999999999 799999999999999985
No 214
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.75 E-value=1.2e-18 Score=131.88 Aligned_cols=87 Identities=24% Similarity=0.449 Sum_probs=80.0
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecC-CCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEee
Q 024018 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (274)
Q Consensus 97 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 175 (274)
....++|||+|||+++++++|+++|+.||.|..|.++.++ +|.++|||||+|.+.++|.+|++.|+|..+.|+.|+|.+
T Consensus 44 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 123 (135)
T 2lea_A 44 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 123 (135)
T ss_dssp GGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3456889999999999999999999999999999999886 589999999999999999999999999999999999999
Q ss_pred cccccCCC
Q 024018 176 AKIKKKNP 183 (274)
Q Consensus 176 ~~~~~~~~ 183 (274)
++......
T Consensus 124 a~~~~~~~ 131 (135)
T 2lea_A 124 ARYGRPPD 131 (135)
T ss_dssp CCCCCCCT
T ss_pred CCCCCCCc
Confidence 98765543
No 215
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=6.9e-19 Score=119.92 Aligned_cols=77 Identities=23% Similarity=0.389 Sum_probs=73.6
Q ss_pred cceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEee
Q 024018 195 FNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSYLY 273 (274)
Q Consensus 195 ~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a~ 273 (274)
++|||+|||..+++++|+++|++ ||.|.++.++.++.+|.++|||||+|.+.++|.+|++.++ ..++|+.|+|++|.
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~-~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a~ 77 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQ-FGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVAF 77 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTT-TSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEECC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEecC
Confidence 46999999999999999999999 9999999999999899999999999999999999999999 99999999999984
No 216
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.2e-17 Score=119.51 Aligned_cols=79 Identities=25% Similarity=0.350 Sum_probs=72.5
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhcc--CceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEe
Q 024018 97 EYSKTRLVAQNVPWTSTHEDIRALFEQH--GTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174 (274)
Q Consensus 97 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~--G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 174 (274)
....++|||+|||+.+++++|+++|+.| |.|..+.+. +|||||+|.+.++|.+|++.|+|..++|+.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVT 84 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 3466899999999999999999999999 889999875 7899999999999999999999999999999999
Q ss_pred ecccccCC
Q 024018 175 YAKIKKKN 182 (274)
Q Consensus 175 ~~~~~~~~ 182 (274)
+++++...
T Consensus 85 ~a~~~~~~ 92 (99)
T 2cpd_A 85 LAKPVDKD 92 (99)
T ss_dssp CCCCCCCC
T ss_pred ECCCCCCC
Confidence 99877654
No 217
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=1.8e-18 Score=125.09 Aligned_cols=82 Identities=21% Similarity=0.315 Sum_probs=77.2
Q ss_pred CCCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEE
Q 024018 190 KPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIAL 269 (274)
Q Consensus 190 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v 269 (274)
...+.++|||+|||..+++++|+++|+. ||.|.++.++.++.+|.++|||||+|.+.++|.+|++. +|..|+|+.|+|
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V 89 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQ-YGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDP 89 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHT-TSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEE
Confidence 3455789999999999999999999999 99999999999998999999999999999999999998 999999999999
Q ss_pred EEee
Q 024018 270 SYLY 273 (274)
Q Consensus 270 ~~a~ 273 (274)
.||+
T Consensus 90 ~~a~ 93 (105)
T 2dh8_A 90 KPCT 93 (105)
T ss_dssp CCSC
T ss_pred EEcc
Confidence 9875
No 218
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=3.5e-18 Score=121.79 Aligned_cols=79 Identities=20% Similarity=0.317 Sum_probs=71.3
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeecc
Q 024018 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (274)
Q Consensus 98 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 177 (274)
...++|||+|||+++++++|+++|+.||.|. +.++.+ .++|||||+|.+.++|.+|++.|||..++|+.|+|.++.
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~---~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 92 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ---GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALAR 92 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC---CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 3567899999999999999999999999986 555543 678999999999999999999999999999999999998
Q ss_pred ccc
Q 024018 178 IKK 180 (274)
Q Consensus 178 ~~~ 180 (274)
++.
T Consensus 93 ~~~ 95 (97)
T 2e5j_A 93 QQR 95 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 219
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.6e-17 Score=120.73 Aligned_cols=80 Identities=18% Similarity=0.303 Sum_probs=73.7
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecC-----cEEE
Q 024018 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEG-----RTLK 172 (274)
Q Consensus 98 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g-----~~i~ 172 (274)
...++|||+|||+++++++|+++|+.||.|..+.|+.+ |||||+|.+.++|.+||+.|||..+.| +.|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~ 86 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 86 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEE
Confidence 35678999999999999999999999999999999865 899999999999999999999999999 9999
Q ss_pred EeecccccCCC
Q 024018 173 VNYAKIKKKNP 183 (274)
Q Consensus 173 v~~~~~~~~~~ 183 (274)
|.++.++....
T Consensus 87 V~~a~~~~~~~ 97 (108)
T 1x4c_A 87 VKVDGPRSPSY 97 (108)
T ss_dssp EEESSCCSCCC
T ss_pred EEeCCCCCCCC
Confidence 99998865543
No 220
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.75 E-value=2.2e-18 Score=122.56 Aligned_cols=82 Identities=20% Similarity=0.418 Sum_probs=73.6
Q ss_pred ccCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEee
Q 024018 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (274)
Q Consensus 96 ~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 175 (274)
.....++|||+|||+.+++++|+++|+.||.|..+ ..+|.++|||||+|.+.++|.+|++.|+|..++|+.|+|.+
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 87 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 87 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34466889999999999999999999999988766 44678899999999999999999999999999999999999
Q ss_pred cccccC
Q 024018 176 AKIKKK 181 (274)
Q Consensus 176 ~~~~~~ 181 (274)
+.++..
T Consensus 88 a~~~~~ 93 (96)
T 1fjc_A 88 TGEKGG 93 (96)
T ss_dssp CSSSCC
T ss_pred cCCCCC
Confidence 987654
No 221
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.75 E-value=6.1e-19 Score=132.86 Aligned_cols=81 Identities=15% Similarity=0.160 Sum_probs=76.4
Q ss_pred CCCccceEEecCCccccHHHHHHHHhhcCCceEE--EEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCc----eeCC
Q 024018 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVS--AEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK----VIMC 264 (274)
Q Consensus 191 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~--~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~----~i~g 264 (274)
..+.++|||+|||+.+++++|+++|+. ||.|.. |+|++|..+|.++|||||+|.+. +|.+|++.|||. .++|
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~-~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAP-YAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGG-GCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHH-hCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 345689999999999999999999999 999977 99999999999999999999999 999999999999 9999
Q ss_pred eEEEEEEee
Q 024018 265 LVIALSYLY 273 (274)
Q Consensus 265 ~~i~v~~a~ 273 (274)
+.|+|+||+
T Consensus 98 r~l~V~~a~ 106 (131)
T 2m2b_A 98 KTINVEFAK 106 (131)
T ss_dssp CCCCCEECC
T ss_pred EEEEEEECC
Confidence 999999985
No 222
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.75 E-value=3.1e-18 Score=124.73 Aligned_cols=78 Identities=18% Similarity=0.276 Sum_probs=70.8
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccC-ceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeecc
Q 024018 99 SKTRLVAQNVPWTSTHEDIRALFEQHG-TVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (274)
Q Consensus 99 ~~~~l~v~nLp~~~t~~~L~~~f~~~G-~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 177 (274)
...+|||+|||+++++++|+++|+.|| .|..+.+..+ .++|||||+|.+.++|++|++.|||..++|+.|+|.++.
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~---~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR---DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC---SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC---CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 457899999999999999999999999 8999888532 479999999999999999999999999999999999987
Q ss_pred cc
Q 024018 178 IK 179 (274)
Q Consensus 178 ~~ 179 (274)
..
T Consensus 104 ~~ 105 (111)
T 2jvr_A 104 NP 105 (111)
T ss_dssp C-
T ss_pred CC
Confidence 54
No 223
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=3.6e-18 Score=124.85 Aligned_cols=82 Identities=13% Similarity=0.073 Sum_probs=74.9
Q ss_pred CCCccceEEecCCccccHHHHH---HHHhhcCCceEEEEEEEcCCCC---CCccEEEEEEcCHHHHHHHHHHhCCceeCC
Q 024018 191 PFATFNLFIANLSFEARAKDLR---EFFISEGWDVVSAEVIFHDNPR---RSAGYGFVSFKSKKVAETAISAFQGKVIMC 264 (274)
Q Consensus 191 ~~~~~~l~V~nlp~~~~~~~l~---~~f~~~~G~v~~~~i~~~~~~g---~~~g~afV~f~~~~~a~~A~~~l~g~~i~g 264 (274)
....++|||+|||..+++++|+ ++|++ ||.|.++.++.+..++ .++|||||+|.+.++|.+|++.|||..++|
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~-~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGK-FGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTT-TSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhc-cCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 3446889999999999999999 99998 9999999999887643 566999999999999999999999999999
Q ss_pred eEEEEEEee
Q 024018 265 LVIALSYLY 273 (274)
Q Consensus 265 ~~i~v~~a~ 273 (274)
+.|+|.||.
T Consensus 91 r~l~V~~a~ 99 (111)
T 2cpi_A 91 RTLKASLGT 99 (111)
T ss_dssp EEEEEESCC
T ss_pred EEEEEEecc
Confidence 999999985
No 224
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=2.9e-18 Score=125.36 Aligned_cols=78 Identities=27% Similarity=0.320 Sum_probs=72.1
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeec
Q 024018 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (274)
Q Consensus 97 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 176 (274)
....++|||+|||+.+++++|+++|+.||.|..|.|.. .+|||||+|.+.++|.+|++.|||..++|+.|+|.|+
T Consensus 7 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 81 (111)
T 1whx_A 7 GRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE-----GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWA 81 (111)
T ss_dssp SEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS-----SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-----CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 33567899999999999999999999999999999874 4889999999999999999999999999999999999
Q ss_pred ccc
Q 024018 177 KIK 179 (274)
Q Consensus 177 ~~~ 179 (274)
...
T Consensus 82 ~~~ 84 (111)
T 1whx_A 82 PIG 84 (111)
T ss_dssp ETT
T ss_pred CCC
Confidence 764
No 225
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.75 E-value=6.5e-19 Score=126.36 Aligned_cols=80 Identities=18% Similarity=0.357 Sum_probs=73.0
Q ss_pred CCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcC-CCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEE
Q 024018 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD-NPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIAL 269 (274)
Q Consensus 191 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~-~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v 269 (274)
....++|||+|||..+++++|+++|+. || |.++.++.+. .+|+++|||||+|.+.++|.+|+ .|+|..++|+.|+|
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRG-LN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCS-SC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 345789999999999999999999998 89 9999999987 68999999999999999999999 89999999999999
Q ss_pred EEee
Q 024018 270 SYLY 273 (274)
Q Consensus 270 ~~a~ 273 (274)
.||+
T Consensus 93 ~~a~ 96 (100)
T 2j76_E 93 DVAD 96 (100)
T ss_dssp EECC
T ss_pred Eecc
Confidence 9985
No 226
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.75 E-value=3.5e-18 Score=140.69 Aligned_cols=81 Identities=22% Similarity=0.406 Sum_probs=75.7
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccC--ceEEEEEeecC-CCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEee
Q 024018 99 SKTRLVAQNVPWTSTHEDIRALFEQHG--TVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (274)
Q Consensus 99 ~~~~l~v~nLp~~~t~~~L~~~f~~~G--~v~~v~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 175 (274)
..++|||+||++++|+++|+++|+.|| .|..|.|+.++ +|+++|||||+|.+.++|.+||+.|||..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 677899999999999999999999999 99999999996 699999999999999999999999999999999999999
Q ss_pred cccc
Q 024018 176 AKIK 179 (274)
Q Consensus 176 ~~~~ 179 (274)
+...
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8754
No 227
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.75 E-value=2.1e-18 Score=122.89 Aligned_cols=82 Identities=26% Similarity=0.479 Sum_probs=74.9
Q ss_pred CCCCeEEEeCCCCCCCHHHHH----HHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEE
Q 024018 98 YSKTRLVAQNVPWTSTHEDIR----ALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKV 173 (274)
Q Consensus 98 ~~~~~l~v~nLp~~~t~~~L~----~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v 173 (274)
...++|||+|||+++++++|+ ++|+.||.|..+.+.. +|.++|||||+|.+.++|.+|++.|+|..++|+.|+|
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 83 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH--HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc--CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEE
Confidence 456889999999999999999 9999999999998863 4677899999999999999999999999999999999
Q ss_pred eecccccC
Q 024018 174 NYAKIKKK 181 (274)
Q Consensus 174 ~~~~~~~~ 181 (274)
.++..+..
T Consensus 84 ~~a~~~~~ 91 (97)
T 1nu4_A 84 QYAKTDSD 91 (97)
T ss_dssp EECSSCCT
T ss_pred EEccCCCc
Confidence 99987643
No 228
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=2e-18 Score=128.07 Aligned_cols=82 Identities=22% Similarity=0.292 Sum_probs=75.2
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhccCce----EEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEE
Q 024018 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTV----LDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172 (274)
Q Consensus 97 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v----~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~ 172 (274)
.....+|||+|||+++|+++|+++|+.||.| ..|.|+.+.+|+++|||||+|.+.++|.+|++. ++..++||.|.
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 4567899999999999999999999999975 689999988899999999999999999999995 99999999999
Q ss_pred Eeecccc
Q 024018 173 VNYAKIK 179 (274)
Q Consensus 173 v~~~~~~ 179 (274)
|..+..+
T Consensus 99 V~~a~~~ 105 (123)
T 2dha_A 99 LFRSTAA 105 (123)
T ss_dssp CEEECHH
T ss_pred EEECCHH
Confidence 9888654
No 229
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.74 E-value=2.5e-18 Score=123.75 Aligned_cols=83 Identities=17% Similarity=0.322 Sum_probs=76.4
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeecc
Q 024018 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (274)
Q Consensus 98 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 177 (274)
...++|||+|||+++++++|+++|+.||.|..+.+..+++|.++|||||+|.+.++|.+|++ +|..++|+.|.|.++.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 35678999999999999999999999999999999999889999999999999999999999 9999999999999998
Q ss_pred cccCC
Q 024018 178 IKKKN 182 (274)
Q Consensus 178 ~~~~~ 182 (274)
.+...
T Consensus 85 ~~~~~ 89 (102)
T 2xs2_A 85 RKQNL 89 (102)
T ss_dssp ECC--
T ss_pred cCcch
Confidence 76543
No 230
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.74 E-value=1.7e-17 Score=119.51 Aligned_cols=78 Identities=22% Similarity=0.371 Sum_probs=72.4
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeeccc
Q 024018 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178 (274)
Q Consensus 99 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 178 (274)
..++|||+|||+++++++|+++|+.||.|..+.+. ++||||+|.+.++|.+|++.|+|..+.|+.|+|.++..
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 82 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP 82 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCC
Confidence 56789999999999999999999999999999986 66999999999999999999999999999999999987
Q ss_pred ccCCC
Q 024018 179 KKKNP 183 (274)
Q Consensus 179 ~~~~~ 183 (274)
+....
T Consensus 83 ~~~~~ 87 (103)
T 2dgu_A 83 PDQKR 87 (103)
T ss_dssp CCCCC
T ss_pred Ccccc
Confidence 76543
No 231
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.7e-17 Score=119.49 Aligned_cols=80 Identities=23% Similarity=0.282 Sum_probs=74.9
Q ss_pred CCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 024018 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALS 270 (274)
Q Consensus 191 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~ 270 (274)
..+.++|||+|||..+++++|+++|+. ||.|.++.++.+..+|.++|||||+|.+.++|.+|++ ++..++|+.|+|.
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~ 88 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFST-FGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCK 88 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGG-GSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEE
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHh-cCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEE
Confidence 345689999999999999999999999 9999999999999899999999999999999999999 5889999999999
Q ss_pred Eee
Q 024018 271 YLY 273 (274)
Q Consensus 271 ~a~ 273 (274)
|+.
T Consensus 89 ~a~ 91 (103)
T 2cqg_A 89 LPN 91 (103)
T ss_dssp CCC
T ss_pred ecC
Confidence 985
No 232
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.74 E-value=5.2e-19 Score=124.30 Aligned_cols=77 Identities=21% Similarity=0.448 Sum_probs=73.7
Q ss_pred cceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEee
Q 024018 195 FNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSYLY 273 (274)
Q Consensus 195 ~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a~ 273 (274)
++|||+|||..+++++|+++|+. ||.|.++.++.+..+|.++|||||+|.+.+ |.+|+..|||..++|+.|+|+||.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~ 78 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQ-FGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEAN 78 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHH-HTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC-
T ss_pred cEEEECCCCCCCCHHHHHHHHHh-cCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcC
Confidence 57999999999999999999999 999999999999989999999999999999 999999999999999999999985
No 233
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.1e-17 Score=122.93 Aligned_cols=83 Identities=25% Similarity=0.394 Sum_probs=74.3
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHhccCce----EEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEE
Q 024018 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTV----LDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKV 173 (274)
Q Consensus 98 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v----~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v 173 (274)
...++|||+|||+++++++|+++|+.||.| ..+.+. +|.++|||||+|.+.++|.+|++.|+|..++|+.|+|
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~---~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 99 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM---TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVI 99 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE---CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC---CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 356889999999999999999999999998 444443 6888999999999999999999999999999999999
Q ss_pred eecccccCCC
Q 024018 174 NYAKIKKKNP 183 (274)
Q Consensus 174 ~~~~~~~~~~ 183 (274)
.++..+....
T Consensus 100 ~~a~~~~~~~ 109 (115)
T 2cpx_A 100 EFGKNKKQRS 109 (115)
T ss_dssp EECCCCSCCC
T ss_pred EEccCCCCCC
Confidence 9999876554
No 234
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.2e-17 Score=119.61 Aligned_cols=76 Identities=13% Similarity=0.092 Sum_probs=69.1
Q ss_pred CCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhC--CceeCCeEEE
Q 024018 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ--GKVIMCLVIA 268 (274)
Q Consensus 191 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~--g~~i~g~~i~ 268 (274)
..+.++|||+|||..+++++|+++|++ ||.|.++.++++ +|||||+|++.++|.+|++.|+ +..+.|+.|+
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~-fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 84 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLP-FGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIY 84 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTT-TSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEE
Confidence 445789999999999999999999999 999999988743 7999999999999999999874 6789999999
Q ss_pred EEEee
Q 024018 269 LSYLY 273 (274)
Q Consensus 269 v~~a~ 273 (274)
|.||+
T Consensus 85 V~~a~ 89 (101)
T 2cq1_A 85 IQYSN 89 (101)
T ss_dssp EEECS
T ss_pred EEEcC
Confidence 99985
No 235
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.9e-17 Score=120.58 Aligned_cols=79 Identities=18% Similarity=0.272 Sum_probs=72.5
Q ss_pred CCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 024018 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALS 270 (274)
Q Consensus 191 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~ 270 (274)
..+.++|||+|||..+++++|+++|+. ||.|..+.+..+ +.++|||||+|.+.++|.+|++.|||..|.|+.|+|.
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 94 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYK-YGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVE 94 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 445689999999999999999999999 999999988543 4589999999999999999999999999999999999
Q ss_pred Eee
Q 024018 271 YLY 273 (274)
Q Consensus 271 ~a~ 273 (274)
||+
T Consensus 95 ~a~ 97 (109)
T 1x4a_A 95 FPR 97 (109)
T ss_dssp CCC
T ss_pred Ecc
Confidence 985
No 236
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=3.1e-18 Score=122.63 Aligned_cols=76 Identities=7% Similarity=0.040 Sum_probs=69.1
Q ss_pred CCCccceEEecCCc-cccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCc--eeCCeEE
Q 024018 191 PFATFNLFIANLSF-EARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK--VIMCLVI 267 (274)
Q Consensus 191 ~~~~~~l~V~nlp~-~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~--~i~g~~i 267 (274)
..+.++|||+|||+ .+++++|+++|++ ||.|.++.++++ +|||||+|++.++|.+|++.|+|. .+.|++|
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~-fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 84 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEP-FGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPV 84 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGG-GSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHh-cCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEE
Confidence 34578999999999 9999999999999 999999998743 589999999999999999999865 5999999
Q ss_pred EEEEee
Q 024018 268 ALSYLY 273 (274)
Q Consensus 268 ~v~~a~ 273 (274)
+|.||+
T Consensus 85 ~V~~a~ 90 (102)
T 1x4d_A 85 RVHLSQ 90 (102)
T ss_dssp EEEEEC
T ss_pred EEEECC
Confidence 999986
No 237
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.8e-18 Score=124.23 Aligned_cols=81 Identities=17% Similarity=0.232 Sum_probs=75.2
Q ss_pred CCccceEEecCCccccHHHHHHHHhhcCCc-eEEEEEE-EcCCCCCCccEEEEEEcCHHHHHHHHHHhC--CceeCCeEE
Q 024018 192 FATFNLFIANLSFEARAKDLREFFISEGWD-VVSAEVI-FHDNPRRSAGYGFVSFKSKKVAETAISAFQ--GKVIMCLVI 267 (274)
Q Consensus 192 ~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~-v~~~~i~-~~~~~g~~~g~afV~f~~~~~a~~A~~~l~--g~~i~g~~i 267 (274)
.+.++|||+|||..+++++|+++|+. ||. |.++.++ .+..+|.++|||||+|.+.++|.+|++.|+ +..+.|+.|
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~-~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAK-VTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHH-HSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHH-hcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 34689999999999999999999999 898 9999998 778888999999999999999999999996 589999999
Q ss_pred EEEEee
Q 024018 268 ALSYLY 273 (274)
Q Consensus 268 ~v~~a~ 273 (274)
+|.||+
T Consensus 85 ~V~~a~ 90 (109)
T 2dis_A 85 AVDWAE 90 (109)
T ss_dssp EEEESC
T ss_pred EEEEcC
Confidence 999985
No 238
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.6e-17 Score=119.42 Aligned_cols=83 Identities=20% Similarity=0.372 Sum_probs=74.3
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecC-CCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEee
Q 024018 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (274)
Q Consensus 97 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 175 (274)
....++|||+|||+++++++|+++|+.|+ .+.++.++ ++.++|||||+|.+.++|.+|++.|+|..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 44668899999999999999999999885 56666775 589999999999999999999999999999999999999
Q ss_pred cccccCC
Q 024018 176 AKIKKKN 182 (274)
Q Consensus 176 ~~~~~~~ 182 (274)
++++...
T Consensus 89 a~~~~~~ 95 (102)
T 2fc8_A 89 AKPKGEG 95 (102)
T ss_dssp CCCCCSS
T ss_pred ecCCCCC
Confidence 9987654
No 239
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5.5e-18 Score=123.46 Aligned_cols=81 Identities=28% Similarity=0.466 Sum_probs=74.9
Q ss_pred CCCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEE
Q 024018 190 KPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIAL 269 (274)
Q Consensus 190 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v 269 (274)
.....++|||+|||..+++++|+++|+. ||.|.++.++.+. +.++|||||+|.+.++|.+|++.|+|..++|+.|+|
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 101 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQ-FGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 101 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGG-TCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHh-cCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 3445789999999999999999999999 9999999998885 348999999999999999999999999999999999
Q ss_pred EEee
Q 024018 270 SYLY 273 (274)
Q Consensus 270 ~~a~ 273 (274)
+||+
T Consensus 102 ~~a~ 105 (109)
T 2err_A 102 NNAT 105 (109)
T ss_dssp EECC
T ss_pred EECC
Confidence 9985
No 240
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.74 E-value=1.3e-17 Score=130.47 Aligned_cols=85 Identities=21% Similarity=0.331 Sum_probs=77.7
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecC-CCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeec
Q 024018 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (274)
Q Consensus 98 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 176 (274)
...++|||+|||+.+++++|+++|+.||.|..|.|+.++ +|.++|||||+|.+.++|.+||..|||..|.|+.|.|.|+
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 456789999999999999999999999999999999986 5899999999999999999999999999999999999999
Q ss_pred ccccCC
Q 024018 177 KIKKKN 182 (274)
Q Consensus 177 ~~~~~~ 182 (274)
..+...
T Consensus 150 ~~~~~~ 155 (165)
T 1rk8_A 150 FVKGPK 155 (165)
T ss_dssp EECC--
T ss_pred cCCCCC
Confidence 876543
No 241
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.6e-17 Score=121.89 Aligned_cols=81 Identities=23% Similarity=0.349 Sum_probs=75.6
Q ss_pred CCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCcee--------
Q 024018 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI-------- 262 (274)
Q Consensus 191 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i-------- 262 (274)
..+.++|||+|||..+++++|+++|+. ||.|.++.++.+. +|.++|||||+|.+.++|.+|++.|||..+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKP-FGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTT-TSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 345689999999999999999999999 9999999999998 899999999999999999999999999999
Q ss_pred CCeEEEEEEee
Q 024018 263 MCLVIALSYLY 273 (274)
Q Consensus 263 ~g~~i~v~~a~ 273 (274)
.++.|.|+||.
T Consensus 100 ~~~~l~v~~a~ 110 (114)
T 1x5o_A 100 PTEPLLCKFSG 110 (114)
T ss_dssp CSSCBEEEECC
T ss_pred CCCceeEEccC
Confidence 57889999984
No 242
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.74 E-value=1.7e-18 Score=117.31 Aligned_cols=74 Identities=23% Similarity=0.382 Sum_probs=69.6
Q ss_pred eEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCC-CCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeec
Q 024018 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (274)
Q Consensus 102 ~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~-~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 176 (274)
+|||+|||+++++++|+++|++||.|.++.+..++. |.++|||||+|.+.++|.+|++ +++..++|+.|.|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 599999999999999999999999999999988864 8999999999999999999999 4999999999999875
No 243
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=4e-18 Score=125.59 Aligned_cols=79 Identities=28% Similarity=0.407 Sum_probs=75.5
Q ss_pred CccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 024018 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSYL 272 (274)
Q Consensus 193 ~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a 272 (274)
+.++|||+|||..+++++|+++|+. ||.|..+.++.+..+|.++|||||+|.+.++|.+|++. +|..|+|+.|+|.||
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQ-WGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTS-SCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 3588999999999999999999998 99999999999999999999999999999999999998 999999999999998
Q ss_pred e
Q 024018 273 Y 273 (274)
Q Consensus 273 ~ 273 (274)
+
T Consensus 104 ~ 104 (116)
T 1x4b_A 104 V 104 (116)
T ss_dssp S
T ss_pred C
Confidence 5
No 244
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.74 E-value=5.2e-18 Score=122.71 Aligned_cols=78 Identities=12% Similarity=0.129 Sum_probs=72.5
Q ss_pred CccceEEecCCccc------cHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCe-
Q 024018 193 ATFNLFIANLSFEA------RAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCL- 265 (274)
Q Consensus 193 ~~~~l~V~nlp~~~------~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~- 265 (274)
..++|||+|||..+ ++++|+++|+. ||.|.++.++ ..+|.++|||||+|.+.++|.+|+..|||..++|+
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~-~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSK-FGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGG-GSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhc-CCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 36889999999999 78999999999 9999999887 46789999999999999999999999999999998
Q ss_pred EEEEEEee
Q 024018 266 VIALSYLY 273 (274)
Q Consensus 266 ~i~v~~a~ 273 (274)
.|+|.||.
T Consensus 91 ~l~V~~a~ 98 (105)
T 2nlw_A 91 TFRVNLFT 98 (105)
T ss_dssp EEEEECSC
T ss_pred eEEEEEcc
Confidence 99999874
No 245
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.74 E-value=3.7e-18 Score=126.98 Aligned_cols=81 Identities=21% Similarity=0.301 Sum_probs=73.6
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHhccCceE--EEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEee
Q 024018 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVL--DIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (274)
Q Consensus 98 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~--~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 175 (274)
...++|||+|||+++|+++|+++|+.| .|. +|.|+.++.|+++|||||+|.+.++|.+|++ +++..|+||.|+|..
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEE
Confidence 456789999999999999999999999 566 8999999889999999999999999999999 588999999999998
Q ss_pred ccccc
Q 024018 176 AKIKK 180 (274)
Q Consensus 176 ~~~~~ 180 (274)
+..+.
T Consensus 118 a~~~e 122 (126)
T 2hgm_A 118 SSQEE 122 (126)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 87543
No 246
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2.1e-17 Score=114.67 Aligned_cols=76 Identities=16% Similarity=0.219 Sum_probs=70.8
Q ss_pred CCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHh-CCceeCCeEEEE
Q 024018 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAF-QGKVIMCLVIAL 269 (274)
Q Consensus 191 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l-~g~~i~g~~i~v 269 (274)
..+.++|||+|||..+++++|+++|++ ||.|.++.+++ ++|||||+|.+.++|.+|++.| +|..++|+.|+|
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~-~G~i~~~~~~~------~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v 81 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQ-FGEIRTITVVQ------RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNV 81 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHT-TSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHh-CCCEeEEEEEC------CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEE
Confidence 445789999999999999999999999 99999999975 3799999999999999999999 999999999999
Q ss_pred EEee
Q 024018 270 SYLY 273 (274)
Q Consensus 270 ~~a~ 273 (274)
+|||
T Consensus 82 ~~ak 85 (85)
T 2ytc_A 82 KWGR 85 (85)
T ss_dssp EECC
T ss_pred EecC
Confidence 9986
No 247
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.73 E-value=7.7e-18 Score=125.68 Aligned_cols=79 Identities=18% Similarity=0.251 Sum_probs=71.2
Q ss_pred CCCccceEEecCCccccHHHHH----HHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeE
Q 024018 191 PFATFNLFIANLSFEARAKDLR----EFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLV 266 (274)
Q Consensus 191 ~~~~~~l~V~nlp~~~~~~~l~----~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~ 266 (274)
..+.++|||+|||+.+++++|+ ++|+. ||.|.+|.+. .+|.++|||||+|.+.++|.+|++.|||..+.|+.
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~-~G~I~~v~i~---~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~ 101 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASS-QGDILDIVVD---LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNP 101 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHH-HSCEEEEEEC---CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhcc-CCCeEEEEec---cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCE
Confidence 3447899999999999999876 69999 9999998774 35788999999999999999999999999999999
Q ss_pred EEEEEee
Q 024018 267 IALSYLY 273 (274)
Q Consensus 267 i~v~~a~ 273 (274)
|+|.||+
T Consensus 102 l~V~~a~ 108 (127)
T 2a3j_A 102 LVITFSE 108 (127)
T ss_dssp CEEEECC
T ss_pred EEEEEcc
Confidence 9999986
No 248
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=4.2e-18 Score=125.09 Aligned_cols=80 Identities=16% Similarity=0.130 Sum_probs=74.6
Q ss_pred CCCccceEEecCCccccHHHHHHHHhhcCCce-EEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEE
Q 024018 191 PFATFNLFIANLSFEARAKDLREFFISEGWDV-VSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIAL 269 (274)
Q Consensus 191 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v-~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v 269 (274)
..+.++|||+|||+.+++++|+++|+. ||.| ..|.++.+. +|.++|||||+|.+.++|.+|++. ||..|+|+.|+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v 88 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEG-IPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFV 88 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTT-SCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHh-CCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEE
Confidence 345689999999999999999999999 8999 889999988 899999999999999999999997 999999999999
Q ss_pred EEee
Q 024018 270 SYLY 273 (274)
Q Consensus 270 ~~a~ 273 (274)
.+|.
T Consensus 89 ~~a~ 92 (114)
T 2cpy_A 89 HVVT 92 (114)
T ss_dssp EEEC
T ss_pred EECC
Confidence 9984
No 249
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.73 E-value=7.1e-19 Score=126.37 Aligned_cols=82 Identities=16% Similarity=0.210 Sum_probs=73.3
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeec-CCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeecc
Q 024018 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (274)
Q Consensus 99 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~-~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 177 (274)
..++|||+|||+++++++|+++|+.||.|.. .++.+ .+|.++|||||+|.+.++|.+|++ |+|..+.|+.|+|.++.
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 5678999999999999999999999999887 44444 358899999999999999999999 99999999999999998
Q ss_pred cccCC
Q 024018 178 IKKKN 182 (274)
Q Consensus 178 ~~~~~ 182 (274)
.+...
T Consensus 94 ~~~~~ 98 (101)
T 1fj7_A 94 GRDGT 98 (101)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 76543
No 250
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.73 E-value=6.2e-18 Score=124.94 Aligned_cols=79 Identities=15% Similarity=0.192 Sum_probs=74.0
Q ss_pred CCccceEEecCCccccHHHHHHHHhhcCCc---eEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEE
Q 024018 192 FATFNLFIANLSFEARAKDLREFFISEGWD---VVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIA 268 (274)
Q Consensus 192 ~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~---v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~ 268 (274)
...++|||+|||+.+++++|+++|+. ||. |..+.++.+.. |+++|||||+|.+.++|.+|++ |||..|+|+.|+
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~-~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSD-CTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTT-SCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHH-cCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 34688999999999999999999998 998 89999999987 9999999999999999999999 899999999999
Q ss_pred EEEee
Q 024018 269 LSYLY 273 (274)
Q Consensus 269 v~~a~ 273 (274)
|.+|.
T Consensus 92 V~~a~ 96 (118)
T 2db1_A 92 VFKSH 96 (118)
T ss_dssp EEEEC
T ss_pred EEECC
Confidence 99873
No 251
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.73 E-value=8.4e-18 Score=119.60 Aligned_cols=79 Identities=19% Similarity=0.361 Sum_probs=71.5
Q ss_pred cCCCCeEEEeCCCC-CCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEee
Q 024018 97 EYSKTRLVAQNVPW-TSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (274)
Q Consensus 97 ~~~~~~l~v~nLp~-~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 175 (274)
....++|||+|||+ .+++++|+++|+.||.|..+.+. +|||||+|.+.++|.+|++.|+|..+.|+.|+|.+
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 34678899999998 99999999999999999999984 78999999999999999999999999999999999
Q ss_pred cccccCC
Q 024018 176 AKIKKKN 182 (274)
Q Consensus 176 ~~~~~~~ 182 (274)
+..+...
T Consensus 80 a~~~~~~ 86 (96)
T 2kvi_A 80 SSSNARP 86 (96)
T ss_dssp EECCCC-
T ss_pred cCcCCCC
Confidence 9876543
No 252
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=8.9e-18 Score=123.40 Aligned_cols=76 Identities=11% Similarity=0.156 Sum_probs=69.7
Q ss_pred CCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCC--ceeCCeEEE
Q 024018 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG--KVIMCLVIA 268 (274)
Q Consensus 191 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g--~~i~g~~i~ 268 (274)
..+.++|||+|||+.+++++|+++|++ ||.|.++.++.+ +|||||+|++.++|.+|++.|++ ..+.|+.|+
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~-fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLP-FGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTT-TSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 345789999999999999999999999 999999999864 79999999999999999999884 689999999
Q ss_pred EEEee
Q 024018 269 LSYLY 273 (274)
Q Consensus 269 v~~a~ 273 (274)
|.||+
T Consensus 101 V~~a~ 105 (119)
T 2ad9_A 101 IQFSN 105 (119)
T ss_dssp EEECS
T ss_pred EEEcc
Confidence 99985
No 253
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.2e-17 Score=118.04 Aligned_cols=79 Identities=27% Similarity=0.384 Sum_probs=70.9
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCc-eEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCC-CeecCcEEEEeec
Q 024018 99 SKTRLVAQNVPWTSTHEDIRALFEQHGT-VLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLES-YEFEGRTLKVNYA 176 (274)
Q Consensus 99 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~-v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~-~~~~g~~i~v~~~ 176 (274)
..++|||+|||+++++++|+++|+.||. |..+.+. ++|||||+|.+.++|.+|++.||| ..++|+.|+|.++
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 80 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYS 80 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEc
Confidence 5678999999999999999999999999 6666553 389999999999999999999999 9999999999999
Q ss_pred ccccCCC
Q 024018 177 KIKKKNP 183 (274)
Q Consensus 177 ~~~~~~~ 183 (274)
.++....
T Consensus 81 ~~~~~~~ 87 (93)
T 2cqh_A 81 VSKKLRS 87 (93)
T ss_dssp CCCCCCC
T ss_pred cCccccC
Confidence 8875543
No 254
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.73 E-value=5.2e-18 Score=128.07 Aligned_cols=79 Identities=15% Similarity=0.183 Sum_probs=74.2
Q ss_pred CCccceEEecCCccccHHHHHHHHhhcCCc---eEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEE
Q 024018 192 FATFNLFIANLSFEARAKDLREFFISEGWD---VVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIA 268 (274)
Q Consensus 192 ~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~---v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~ 268 (274)
....+|||+|||+.+++++|+++|+. ||. |.+|.++.+.. |+++|||||+|.+.++|.+|++ |||..++||.|+
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~-~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~ 118 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSD-CTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIE 118 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTT-CCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHH-hCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEE
Confidence 34688999999999999999999999 999 89999999987 9999999999999999999999 999999999999
Q ss_pred EEEee
Q 024018 269 LSYLY 273 (274)
Q Consensus 269 v~~a~ 273 (274)
|.+|.
T Consensus 119 V~~a~ 123 (136)
T 2hgl_A 119 VFKSH 123 (136)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 99873
No 255
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.73 E-value=2.9e-18 Score=118.05 Aligned_cols=73 Identities=12% Similarity=0.141 Sum_probs=67.6
Q ss_pred cceEEecCCccc------cHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCe-EE
Q 024018 195 FNLFIANLSFEA------RAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCL-VI 267 (274)
Q Consensus 195 ~~l~V~nlp~~~------~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~-~i 267 (274)
++|||+|||..+ ++++|+++|++ ||.|.++.+. +.+|.++|||||+|.+.++|.+|++.|||..++|+ .|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~-~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSK-FGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHT-TCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhh-cCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 679999999999 78999999999 9999999887 45789999999999999999999999999999999 88
Q ss_pred EEE
Q 024018 268 ALS 270 (274)
Q Consensus 268 ~v~ 270 (274)
+|+
T Consensus 79 ~V~ 81 (81)
T 2krb_A 79 RVN 81 (81)
T ss_dssp CCC
T ss_pred EeC
Confidence 763
No 256
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.4e-17 Score=119.93 Aligned_cols=76 Identities=12% Similarity=0.007 Sum_probs=68.8
Q ss_pred CCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCc--eeCCeEEE
Q 024018 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK--VIMCLVIA 268 (274)
Q Consensus 191 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~--~i~g~~i~ 268 (274)
..+.++|||+|||..+++++|+++|++ ||.|.++.+++ .+|||||+|++.++|.+|++.|++. .++|++|+
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~-fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~ 84 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEK-FGTICYVMMMP------FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAF 84 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTT-TSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEEC------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 445789999999999999999999999 99999998874 3799999999999999999998765 48999999
Q ss_pred EEEee
Q 024018 269 LSYLY 273 (274)
Q Consensus 269 v~~a~ 273 (274)
|.||+
T Consensus 85 V~~a~ 89 (104)
T 1wex_A 85 FNYST 89 (104)
T ss_dssp EEECS
T ss_pred EEEcc
Confidence 99985
No 257
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.2e-17 Score=120.54 Aligned_cols=79 Identities=22% Similarity=0.194 Sum_probs=72.7
Q ss_pred CCccceEEecCCccccHHHHHHHHhhcCCceEE-EEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 024018 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVS-AEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALS 270 (274)
Q Consensus 192 ~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~-~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~ 270 (274)
....+|||+|||+.+++++|+++|+. ||.|.+ +.++.+ .+|+++|||||+|.+.++|.+|++. +|..++|+.|+|.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~-~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSG-LEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTT-CCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 34689999999999999999999999 999987 778777 7899999999999999999999997 9999999999998
Q ss_pred Eee
Q 024018 271 YLY 273 (274)
Q Consensus 271 ~a~ 273 (274)
++.
T Consensus 90 ~~~ 92 (104)
T 1wg5_A 90 KSS 92 (104)
T ss_dssp EEC
T ss_pred ECC
Confidence 863
No 258
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.7e-18 Score=127.33 Aligned_cols=80 Identities=23% Similarity=0.271 Sum_probs=74.6
Q ss_pred CCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 024018 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271 (274)
Q Consensus 192 ~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~ 271 (274)
....+|||+|||+.+++++|+++|+. ||.|.++.++.+..+|.++|||||+|.+.++|.+|++ |||..|+|+.|+|.+
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~-~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKK-LDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCS-SCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHh-cCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 34689999999999999999999998 9999987777888889999999999999999999999 999999999999999
Q ss_pred ee
Q 024018 272 LY 273 (274)
Q Consensus 272 a~ 273 (274)
|.
T Consensus 101 a~ 102 (124)
T 1wel_A 101 IT 102 (124)
T ss_dssp EC
T ss_pred CC
Confidence 74
No 259
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.5e-17 Score=118.44 Aligned_cols=79 Identities=25% Similarity=0.357 Sum_probs=72.8
Q ss_pred CCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 024018 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALS 270 (274)
Q Consensus 191 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~ 270 (274)
..+.++|||+|||..+++++|+++|+. |+ .+.++.+..++.++|||||+|.+.++|.+|++.|||..|.|+.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDG-SV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTT-CS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcC-Ce---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 445789999999999999999999997 64 67788888889999999999999999999999999999999999999
Q ss_pred Eee
Q 024018 271 YLY 273 (274)
Q Consensus 271 ~a~ 273 (274)
||+
T Consensus 88 ~a~ 90 (102)
T 2fc8_A 88 WAK 90 (102)
T ss_dssp ECC
T ss_pred Eec
Confidence 985
No 260
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.72 E-value=8.2e-18 Score=138.48 Aligned_cols=80 Identities=16% Similarity=0.218 Sum_probs=75.7
Q ss_pred CccceEEecCCccccHHHHHHHHhhcCC--ceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 024018 193 ATFNLFIANLSFEARAKDLREFFISEGW--DVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALS 270 (274)
Q Consensus 193 ~~~~l~V~nlp~~~~~~~l~~~f~~~~G--~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~ 270 (274)
...+|||+||++.+++++|+++|+. || .|.+|.|+.+..+|+++|||||+|.+.++|.+||+.|||..|.|+.|+|.
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~-~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~ 145 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHS-LGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVT 145 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHT-TTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHH-HCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEE
Confidence 3578999999999999999999998 99 99999999999999999999999999999999999999999999999999
Q ss_pred Eee
Q 024018 271 YLY 273 (274)
Q Consensus 271 ~a~ 273 (274)
||+
T Consensus 146 ~a~ 148 (229)
T 3q2s_C 146 PVN 148 (229)
T ss_dssp ECC
T ss_pred ECC
Confidence 974
No 261
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.72 E-value=2e-18 Score=117.02 Aligned_cols=75 Identities=17% Similarity=0.320 Sum_probs=71.7
Q ss_pred ceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 024018 196 NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSYL 272 (274)
Q Consensus 196 ~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a 272 (274)
+|||+|||..+++++|+++|++ ||.|.++.++.+..+|.++|||||+|.+.++|.+|++. +|..++|+.|+|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGG-FGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHH-HSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 5899999999999999999999 99999999999988999999999999999999999995 999999999999986
No 262
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=5e-17 Score=115.08 Aligned_cols=79 Identities=19% Similarity=0.264 Sum_probs=69.1
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeeccc
Q 024018 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178 (274)
Q Consensus 99 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 178 (274)
..++|||+|||+++++++|+++|+.||.|.+| +....+|. ||||+|.+.++|.+|++ |+|..++|+.|.|.++..
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v-~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~ 81 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV-VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQ 81 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE-EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE-EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCc
Confidence 55789999999999999999999999999988 33333444 99999999999999999 999999999999998876
Q ss_pred ccCC
Q 024018 179 KKKN 182 (274)
Q Consensus 179 ~~~~ 182 (274)
+...
T Consensus 82 ~~~~ 85 (94)
T 2e5g_A 82 KEFQ 85 (94)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 6543
No 263
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1.6e-17 Score=119.23 Aligned_cols=78 Identities=26% Similarity=0.313 Sum_probs=70.9
Q ss_pred CCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 024018 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALS 270 (274)
Q Consensus 191 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~ 270 (274)
..+.++|||+|||..+++++|+++|+. ||.| .++.+ .+|.++|||||+|.+.++|.+|++.|||..+.|+.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEK-ATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSS-CSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-CCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 445789999999999999999999998 8977 45555 578899999999999999999999999999999999999
Q ss_pred Eee
Q 024018 271 YLY 273 (274)
Q Consensus 271 ~a~ 273 (274)
||+
T Consensus 87 ~a~ 89 (101)
T 2fc9_A 87 LQG 89 (101)
T ss_dssp ECS
T ss_pred EcC
Confidence 985
No 264
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=7.9e-18 Score=121.06 Aligned_cols=79 Identities=15% Similarity=0.149 Sum_probs=72.3
Q ss_pred CCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 024018 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALS 270 (274)
Q Consensus 191 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~ 270 (274)
....++|||+|||+.+++++|+++|+. ||.+ ++.++.++ +|+++|||||+|.+.++|.+|++ +|+..++|+.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~-~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSP-LNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELF 87 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCS-CCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHH-cCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 345689999999999999999999998 8955 99999998 79999999999999999999995 79999999999998
Q ss_pred Eee
Q 024018 271 YLY 273 (274)
Q Consensus 271 ~a~ 273 (274)
++.
T Consensus 88 ~~~ 90 (102)
T 1wez_A 88 LNS 90 (102)
T ss_dssp EEC
T ss_pred ECC
Confidence 864
No 265
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.72 E-value=9.7e-18 Score=122.10 Aligned_cols=75 Identities=16% Similarity=0.169 Sum_probs=69.3
Q ss_pred ccceEEecCCccccHHHHHHHHhhcCC-ceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 024018 194 TFNLFIANLSFEARAKDLREFFISEGW-DVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSYL 272 (274)
Q Consensus 194 ~~~l~V~nlp~~~~~~~l~~~f~~~~G-~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a 272 (274)
..+|||+|||+.+++++|+++|++ || .|..+.+..+ .++|||||+|.+.++|.+|++.|||..++|+.|+|.++
T Consensus 28 ~~~l~VgnLp~~~te~dL~~~F~~-~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 28 RYRITMKNLPEGCSWQDLKDLARE-NSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CEEEEEECSSCCCCHHHHHHHHHH-HTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCEEEEECCCCCCCHHHHHHHHHH-hCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 578999999999999999999999 89 8999887532 47999999999999999999999999999999999997
Q ss_pred e
Q 024018 273 Y 273 (274)
Q Consensus 273 ~ 273 (274)
+
T Consensus 103 ~ 103 (111)
T 2jvr_A 103 D 103 (111)
T ss_dssp C
T ss_pred C
Confidence 5
No 266
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.72 E-value=4.6e-17 Score=118.73 Aligned_cols=76 Identities=25% Similarity=0.370 Sum_probs=70.7
Q ss_pred CCCeEEEeCCCCC-CCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeecc
Q 024018 99 SKTRLVAQNVPWT-STHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (274)
Q Consensus 99 ~~~~l~v~nLp~~-~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 177 (274)
..++|||+|||+. +++++|+++|+.||.|..|.+ ++|||||+|.+.++|.+|++.|+|..++|+.|+|.++.
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 98 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAG 98 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 4578999999999 999999999999999999988 38999999999999999999999999999999999998
Q ss_pred cccC
Q 024018 178 IKKK 181 (274)
Q Consensus 178 ~~~~ 181 (274)
....
T Consensus 99 ~~~~ 102 (110)
T 1wf1_A 99 EPKP 102 (110)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 5544
No 267
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1.6e-17 Score=120.72 Aligned_cols=75 Identities=20% Similarity=0.289 Sum_probs=70.5
Q ss_pred ccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 024018 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSYL 272 (274)
Q Consensus 194 ~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a 272 (274)
..+|||+|||+.+++++|+++|+. | .|.+|.|+.+.. |+++|||||+|.+.++|.+|+ .+||..++||.|+|..|
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~-~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHG-L-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTT-S-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhcc-C-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 578999999999999999999999 7 899999999876 899999999999999999999 58999999999999876
No 268
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.72 E-value=2.3e-18 Score=130.41 Aligned_cols=83 Identities=17% Similarity=0.282 Sum_probs=74.9
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeec
Q 024018 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (274)
Q Consensus 97 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 176 (274)
....++|||+|||+++|+++|+++|+.|| |.+|.|+.+++|+++|||||+|.+.++|++|+ .+++..++||.|+|..+
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 34567899999999999999999999999 66999999988999999999999999999999 58999999999999998
Q ss_pred ccccC
Q 024018 177 KIKKK 181 (274)
Q Consensus 177 ~~~~~ 181 (274)
.....
T Consensus 121 ~~~~~ 125 (139)
T 2hgn_A 121 STTGA 125 (139)
T ss_dssp CCSCC
T ss_pred CCCCC
Confidence 76543
No 269
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.72 E-value=1.9e-17 Score=130.99 Aligned_cols=84 Identities=19% Similarity=0.357 Sum_probs=78.9
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeecc
Q 024018 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (274)
Q Consensus 98 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 177 (274)
...++|||+|||+.+++++|+++|+.||.|..|.|..+.+|.++|||||+|.+.++|.+|++.|+|..++|+.|+|.++.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 45678999999999999999999999999999999998889999999999999999999999999999999999999998
Q ss_pred cccC
Q 024018 178 IKKK 181 (274)
Q Consensus 178 ~~~~ 181 (274)
....
T Consensus 166 ~~~~ 169 (177)
T 2f3j_A 166 SQID 169 (177)
T ss_dssp SGGG
T ss_pred CCCC
Confidence 6543
No 270
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.72 E-value=3.1e-17 Score=120.59 Aligned_cols=78 Identities=17% Similarity=0.206 Sum_probs=72.5
Q ss_pred CCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 024018 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271 (274)
Q Consensus 192 ~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~ 271 (274)
.+.++|||+|||..+++++|+++|+. ||.|.++.++.+ +.++|||||+|.+.++|.+|++.|||..++|+.|+|.|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGK-YGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHT-TSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34689999999999999999999998 999999999865 45699999999999999999999999999999999999
Q ss_pred ee
Q 024018 272 LY 273 (274)
Q Consensus 272 a~ 273 (274)
|.
T Consensus 82 a~ 83 (115)
T 3lqv_A 82 YN 83 (115)
T ss_dssp CC
T ss_pred ec
Confidence 85
No 271
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.72 E-value=2.1e-17 Score=127.32 Aligned_cols=80 Identities=18% Similarity=0.289 Sum_probs=74.3
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeec
Q 024018 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (274)
Q Consensus 97 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 176 (274)
....++|||+|||+++++++|+++|+.||.|.++.+..+ ++|||||+|.+.++|.+|++.|||..++|+.|+|.++
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 145 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELS 145 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 446789999999999999999999999999999999876 5899999999999999999999999999999999999
Q ss_pred cccc
Q 024018 177 KIKK 180 (274)
Q Consensus 177 ~~~~ 180 (274)
.++.
T Consensus 146 ~~~~ 149 (150)
T 2i2y_A 146 NGEK 149 (150)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8753
No 272
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=3.9e-17 Score=114.64 Aligned_cols=74 Identities=28% Similarity=0.408 Sum_probs=69.4
Q ss_pred CCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 024018 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALS 270 (274)
Q Consensus 191 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~ 270 (274)
..+.++|||+|||..+++++|+++|+. ||.|.++.++ +|||||+|.+.++|.+|++.|||..+.|+.|+|.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 75 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQ-YGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVE 75 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHT-SSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEE
Confidence 345789999999999999999999999 9999999986 6899999999999999999999999999999999
Q ss_pred Eee
Q 024018 271 YLY 273 (274)
Q Consensus 271 ~a~ 273 (274)
|++
T Consensus 76 ~a~ 78 (90)
T 2dnq_A 76 ASK 78 (90)
T ss_dssp CSS
T ss_pred ECC
Confidence 985
No 273
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.71 E-value=1.5e-17 Score=121.76 Aligned_cols=78 Identities=12% Similarity=0.105 Sum_probs=71.2
Q ss_pred cceEEecC----CccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcC----HHH----HHHHHH--HhCCc
Q 024018 195 FNLFIANL----SFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKS----KKV----AETAIS--AFQGK 260 (274)
Q Consensus 195 ~~l~V~nl----p~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~----~~~----a~~A~~--~l~g~ 260 (274)
..|||+|| |+.+++++|+++|+. ||.|.++.++.|+.||+++|||||+|.+ +++ |.+|+. .|+|.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~-fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKK-YGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHT-TSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 57999999 999999999999998 9999999999999999999999999996 333 889988 78999
Q ss_pred eeCCeEEEEEEee
Q 024018 261 VIMCLVIALSYLY 273 (274)
Q Consensus 261 ~i~g~~i~v~~a~ 273 (274)
.|+|+.|+|.+.+
T Consensus 82 ~I~Gr~irV~ln~ 94 (136)
T 2j8a_A 82 FIMGFKFEVILNK 94 (136)
T ss_dssp EETTEEEEEEECC
T ss_pred eecCcEEEEEECc
Confidence 9999999999864
No 274
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=2.9e-17 Score=117.03 Aligned_cols=76 Identities=12% Similarity=0.157 Sum_probs=70.1
Q ss_pred CCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeC--CeEEE
Q 024018 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM--CLVIA 268 (274)
Q Consensus 191 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~--g~~i~ 268 (274)
..+.++|||+|||..+++++|+++|++ ||.|.++.+..+ +|||||+|.+.++|.+|++.|||..+. |+.|+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~ 86 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDR-FGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLR 86 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHT-TSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEE
Confidence 445689999999999999999999999 999999988632 789999999999999999999999999 99999
Q ss_pred EEEee
Q 024018 269 LSYLY 273 (274)
Q Consensus 269 v~~a~ 273 (274)
|.||+
T Consensus 87 V~~a~ 91 (97)
T 1why_A 87 VDFAK 91 (97)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 99985
No 275
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1e-16 Score=114.14 Aligned_cols=79 Identities=25% Similarity=0.316 Sum_probs=71.6
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeec
Q 024018 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (274)
Q Consensus 97 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 176 (274)
....++|||+|| ++++++|+++|+.||.|..|.+. .++|||||+|.+.++|.+|++.|+|..+.|+.|+|.++
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE-----TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec-----CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 345688999996 89999999999999999999985 45899999999999999999999999999999999999
Q ss_pred ccccCC
Q 024018 177 KIKKKN 182 (274)
Q Consensus 177 ~~~~~~ 182 (274)
..+...
T Consensus 85 ~~~~~~ 90 (97)
T 1x5p_A 85 RKQPML 90 (97)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 876554
No 276
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.71 E-value=2.2e-17 Score=118.51 Aligned_cols=74 Identities=15% Similarity=0.142 Sum_probs=69.8
Q ss_pred CccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 024018 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSYL 272 (274)
Q Consensus 193 ~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a 272 (274)
..++|||+|||..+++++|+++|+. ||.|.++.+. .++|||||+|.+.++|.+|+..|||..++|+.|+|+||
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~-~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQN-FGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHT-TSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHh-CCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 3688999999999999999999999 9999999987 46899999999999999999999999999999999998
Q ss_pred e
Q 024018 273 Y 273 (274)
Q Consensus 273 ~ 273 (274)
+
T Consensus 99 ~ 99 (101)
T 2la4_A 99 K 99 (101)
T ss_dssp C
T ss_pred c
Confidence 6
No 277
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.71 E-value=6.1e-17 Score=115.34 Aligned_cols=74 Identities=19% Similarity=0.302 Sum_probs=69.2
Q ss_pred CCCccceEEecCCc-cccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEE
Q 024018 191 PFATFNLFIANLSF-EARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIAL 269 (274)
Q Consensus 191 ~~~~~~l~V~nlp~-~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v 269 (274)
..+.++|||+|||. .+++++|+++|+. ||.|.++.+ ++|||||+|.+.++|.+|++.|||..++|+.|+|
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~-~G~v~~v~i--------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 89 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSP-YGHIMQINI--------KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLIL 89 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGG-GSCEEEEEE--------CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHh-cCCEEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 44578999999998 9999999999999 999999988 3799999999999999999999999999999999
Q ss_pred EEee
Q 024018 270 SYLY 273 (274)
Q Consensus 270 ~~a~ 273 (274)
.||+
T Consensus 90 ~~a~ 93 (97)
T 2xnq_A 90 EVSS 93 (97)
T ss_dssp EECC
T ss_pred EecC
Confidence 9985
No 278
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=6.3e-18 Score=124.28 Aligned_cols=82 Identities=20% Similarity=0.269 Sum_probs=71.1
Q ss_pred CCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 024018 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALS 270 (274)
Q Consensus 191 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~ 270 (274)
..+.++|||+|||..+++++|+++|+. ||.|..+.+..+..+|.++|||||+|.+.++|.+|++.|||..++|+.|+|.
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~-~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFAR-FQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHH-HHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHH-hCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 345789999999999999999999999 8998443333332268899999999999999999999999999999999999
Q ss_pred Eee
Q 024018 271 YLY 273 (274)
Q Consensus 271 ~a~ 273 (274)
||+
T Consensus 101 ~a~ 103 (115)
T 2cpx_A 101 FGK 103 (115)
T ss_dssp ECC
T ss_pred Ecc
Confidence 985
No 279
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.7e-17 Score=119.64 Aligned_cols=76 Identities=17% Similarity=0.247 Sum_probs=69.0
Q ss_pred CCCeEEE--eCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCee-----cCcEE
Q 024018 99 SKTRLVA--QNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEF-----EGRTL 171 (274)
Q Consensus 99 ~~~~l~v--~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~-----~g~~i 171 (274)
..++||| |||++++++++|+++|++||.|.+|.|..+ +|||||+|.+.++|.+|++.|||..+ .|++|
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~-----rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l 98 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN-----KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITL 98 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT-----CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEEC
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEE
Confidence 4578999 779999999999999999999999988643 89999999999999999999999988 78999
Q ss_pred EEeecccc
Q 024018 172 KVNYAKIK 179 (274)
Q Consensus 172 ~v~~~~~~ 179 (274)
.|.++...
T Consensus 99 ~v~~a~~~ 106 (114)
T 2cq2_A 99 YLNFVEKV 106 (114)
T ss_dssp EEEEESCC
T ss_pred EEEecccC
Confidence 99998754
No 280
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.55 E-value=6.2e-19 Score=129.98 Aligned_cols=86 Identities=24% Similarity=0.377 Sum_probs=79.0
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhccCceEE--------EEEeecC-CCCceeEEEEEECCHHHHHHHHHHcCCCeec
Q 024018 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLD--------IELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFE 167 (274)
Q Consensus 97 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~--------v~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~ 167 (274)
....++|||+|||+++++++|+++|+.||.|.. +.++.++ +|.++|||||+|.+.++|.+|++.|+|..+.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 346688999999999999999999999999998 8888885 4899999999999999999999999999999
Q ss_pred CcEEEEeecccccCC
Q 024018 168 GRTLKVNYAKIKKKN 182 (274)
Q Consensus 168 g~~i~v~~~~~~~~~ 182 (274)
|+.|+|.++.++...
T Consensus 84 g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 84 GNPIKVSFATRRADF 98 (116)
Confidence 999999999887554
No 281
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.71 E-value=2.3e-18 Score=123.66 Aligned_cols=80 Identities=21% Similarity=0.282 Sum_probs=73.1
Q ss_pred CCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 024018 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALS 270 (274)
Q Consensus 191 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~ 270 (274)
..+.++|||+|||..+++++|+++|+. ||.|.. .++.+..+|.++|||||+|.+.++|.+|++ |||..+.|+.|+|.
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~ 90 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISE-LFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 90 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHH-HHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHH-hCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEE
Confidence 345789999999999999999999999 898887 666777778999999999999999999999 99999999999999
Q ss_pred Eee
Q 024018 271 YLY 273 (274)
Q Consensus 271 ~a~ 273 (274)
||+
T Consensus 91 ~a~ 93 (101)
T 1fj7_A 91 KPK 93 (101)
T ss_dssp CCS
T ss_pred EcC
Confidence 985
No 282
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.6e-17 Score=119.06 Aligned_cols=75 Identities=19% Similarity=0.255 Sum_probs=70.3
Q ss_pred CCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 024018 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271 (274)
Q Consensus 192 ~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~ 271 (274)
...++|||+|||..+++++|+++|+. ||.|.++.++.+ +|||||+|.+.++|.+|++.|+|..++|+.|+|.|
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~-~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSP-FGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHH-HSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 34689999999999999999999999 999999999754 79999999999999999999999999999999999
Q ss_pred ee
Q 024018 272 LY 273 (274)
Q Consensus 272 a~ 273 (274)
|+
T Consensus 96 a~ 97 (109)
T 1x4g_A 96 GK 97 (109)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 283
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.71 E-value=9.5e-18 Score=119.46 Aligned_cols=79 Identities=20% Similarity=0.269 Sum_probs=72.2
Q ss_pred CCCccceEEecCCccccHHHHH----HHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeE
Q 024018 191 PFATFNLFIANLSFEARAKDLR----EFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLV 266 (274)
Q Consensus 191 ~~~~~~l~V~nlp~~~~~~~l~----~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~ 266 (274)
..+.++|||+|||..+++++|+ ++|+. ||.|.++.+.. +|.++|||||+|.+.++|.+|++.|||..++|+.
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~-~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSR-FGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 80 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGG-GSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-CCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcE
Confidence 3457899999999999999999 99999 99999998863 4678899999999999999999999999999999
Q ss_pred EEEEEee
Q 024018 267 IALSYLY 273 (274)
Q Consensus 267 i~v~~a~ 273 (274)
|+|.||+
T Consensus 81 l~v~~a~ 87 (97)
T 1nu4_A 81 MRIQYAK 87 (97)
T ss_dssp CEEEECS
T ss_pred EEEEEcc
Confidence 9999985
No 284
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=6.1e-17 Score=117.65 Aligned_cols=74 Identities=19% Similarity=0.184 Sum_probs=69.3
Q ss_pred CCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCC-----eE
Q 024018 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC-----LV 266 (274)
Q Consensus 192 ~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g-----~~ 266 (274)
...++|||+|||..+++++|+++|+. ||.|.++.++.+ |||||+|.+.++|.+|++.|||..|.| +.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMRE-AGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGG-GSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 34689999999999999999999998 999999999865 899999999999999999999999999 99
Q ss_pred EEEEEee
Q 024018 267 IALSYLY 273 (274)
Q Consensus 267 i~v~~a~ 273 (274)
|+|.+|.
T Consensus 85 i~V~~a~ 91 (108)
T 1x4c_A 85 IRVKVDG 91 (108)
T ss_dssp EEEEESS
T ss_pred EEEEeCC
Confidence 9999984
No 285
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=5e-17 Score=115.77 Aligned_cols=77 Identities=17% Similarity=0.243 Sum_probs=69.8
Q ss_pred CCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 024018 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALS 270 (274)
Q Consensus 191 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~ 270 (274)
....++|||+|||..+++++|+++|+. ||.|. +.++.+ .++|||||+|.+.++|.+|++.|||..++|+.|+|+
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~-~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 89 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRE-LGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVA 89 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHH-TTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHh-cCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 344689999999999999999999999 99996 666654 578999999999999999999999999999999999
Q ss_pred Eee
Q 024018 271 YLY 273 (274)
Q Consensus 271 ~a~ 273 (274)
||+
T Consensus 90 ~a~ 92 (97)
T 2e5j_A 90 LAR 92 (97)
T ss_dssp ECC
T ss_pred EcC
Confidence 985
No 286
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.70 E-value=3e-17 Score=120.13 Aligned_cols=78 Identities=14% Similarity=0.128 Sum_probs=70.3
Q ss_pred CeEEEeCC----CCCCCHHHHHHHHhccCceEEEEEeecCC-CCceeEEEEEECC----HHH----HHHHHH--HcCCCe
Q 024018 101 TRLVAQNV----PWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGS----PDE----ATAALN--NLESYE 165 (274)
Q Consensus 101 ~~l~v~nL----p~~~t~~~L~~~f~~~G~v~~v~~~~~~~-~~~~g~afv~f~~----~~~----a~~a~~--~l~~~~ 165 (274)
..|||+|| |+.+++++|+++|+.||+|.++.++.|+. |+++|||||+|.+ +++ |.+|+. .++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 57999999 99999999999999999999999999985 8999999999996 433 788988 789999
Q ss_pred ecCcEEEEeeccc
Q 024018 166 FEGRTLKVNYAKI 178 (274)
Q Consensus 166 ~~g~~i~v~~~~~ 178 (274)
++||.|+|+..+.
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999998764
No 287
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.70 E-value=5.2e-17 Score=113.54 Aligned_cols=76 Identities=22% Similarity=0.406 Sum_probs=70.3
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeeccc
Q 024018 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178 (274)
Q Consensus 99 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 178 (274)
..++|||+|||+++++++|+++|++| .|..+.+. +++|||||+|.+.++|.+|++.|+|..++|+.|+|.++..
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 56789999999999999999999999 99999884 5699999999999999999999999999999999999876
Q ss_pred cc
Q 024018 179 KK 180 (274)
Q Consensus 179 ~~ 180 (274)
..
T Consensus 78 ~~ 79 (88)
T 1wg1_A 78 DA 79 (88)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 288
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.70 E-value=6e-18 Score=122.82 Aligned_cols=80 Identities=10% Similarity=0.135 Sum_probs=74.3
Q ss_pred CCCccceEEecCCccccHHHHHHHHhhcCCc---eEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEE
Q 024018 191 PFATFNLFIANLSFEARAKDLREFFISEGWD---VVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVI 267 (274)
Q Consensus 191 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~---v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i 267 (274)
....++|||+|||+.+++++|+++|+. ||. |.++.++.+.. |+++|||||+|.+.++|.+|++ ++|..++|+.|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~-~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i 84 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSD-CRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYV 84 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTT-SCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHh-cCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEE
Confidence 344688999999999999999999998 888 89999999887 9999999999999999999999 89999999999
Q ss_pred EEEEee
Q 024018 268 ALSYLY 273 (274)
Q Consensus 268 ~v~~a~ 273 (274)
+|.+|.
T Consensus 85 ~V~~a~ 90 (107)
T 2lmi_A 85 EVYEIN 90 (107)
T ss_dssp CCEECC
T ss_pred EEEECC
Confidence 999874
No 289
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.70 E-value=4.2e-17 Score=118.49 Aligned_cols=75 Identities=20% Similarity=0.382 Sum_probs=69.9
Q ss_pred CCCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEE
Q 024018 190 KPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIAL 269 (274)
Q Consensus 190 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v 269 (274)
...+.++|||+|||..+++++|+++|+. ||.|.++.+. +|||||+|.+.++|.+|++.|||..++|+.|+|
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~-~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 97 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGP-FGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEV 97 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTT-TSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHh-cCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 3455789999999999999999999999 9999999987 789999999999999999999999999999999
Q ss_pred EEee
Q 024018 270 SYLY 273 (274)
Q Consensus 270 ~~a~ 273 (274)
.||+
T Consensus 98 ~~a~ 101 (108)
T 2jvo_A 98 VYSK 101 (108)
T ss_dssp ESCS
T ss_pred EEec
Confidence 9985
No 290
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.70 E-value=1e-16 Score=119.26 Aligned_cols=78 Identities=23% Similarity=0.377 Sum_probs=70.5
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeE-EEEEECCHHHHHHHHHHcCCCeecC--cEEEEeec
Q 024018 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGL-AFVTMGSPDEATAALNNLESYEFEG--RTLKVNYA 176 (274)
Q Consensus 100 ~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~-afv~f~~~~~a~~a~~~l~~~~~~g--~~i~v~~~ 176 (274)
-..|||+||++.+|+++|+++|++||.|.+|.+..+ .+|| |||+|.+.++|.+|++.|||..|.| +.|+|.++
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~a 103 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 103 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEEC
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEec
Confidence 345889999999999999999999999999988764 2677 9999999999999999999999988 89999999
Q ss_pred ccccC
Q 024018 177 KIKKK 181 (274)
Q Consensus 177 ~~~~~ 181 (274)
+.+.-
T Consensus 104 k~~~l 108 (130)
T 3zzy_A 104 KLTSL 108 (130)
T ss_dssp SCSSC
T ss_pred CCCce
Confidence 87643
No 291
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.70 E-value=7.5e-17 Score=124.41 Aligned_cols=78 Identities=23% Similarity=0.359 Sum_probs=70.8
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecC--cEEEEeecc
Q 024018 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEG--RTLKVNYAK 177 (274)
Q Consensus 100 ~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g--~~i~v~~~~ 177 (274)
..+|||+||++.+|+++|+++|++||.|.+|.+..+ ..+|||||+|.+.++|++|++.|||..|.| +.|+|.|++
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k---~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK---NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES---SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC---CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 356999999999999999999999999999998654 257899999999999999999999999965 999999998
Q ss_pred ccc
Q 024018 178 IKK 180 (274)
Q Consensus 178 ~~~ 180 (274)
++.
T Consensus 123 ~~~ 125 (164)
T 1sjr_A 123 LTS 125 (164)
T ss_dssp SSS
T ss_pred CCc
Confidence 764
No 292
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=1.9e-17 Score=120.25 Aligned_cols=76 Identities=7% Similarity=0.008 Sum_probs=68.9
Q ss_pred CCCccceEEecCCcc-ccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCC--ceeCCeEE
Q 024018 191 PFATFNLFIANLSFE-ARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG--KVIMCLVI 267 (274)
Q Consensus 191 ~~~~~~l~V~nlp~~-~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g--~~i~g~~i 267 (274)
..+.++|||+|||+. +++++|+++|++ ||.|.++.++ +++|||||+|++.++|.+|++.|++ ..+.|+.|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~-fG~V~~v~i~------~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l 94 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEP-YGKIKNYILM------RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCV 94 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTT-TSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCC
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHh-cCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 455789999999998 999999999999 9999999986 3589999999999999999998864 56999999
Q ss_pred EEEEee
Q 024018 268 ALSYLY 273 (274)
Q Consensus 268 ~v~~a~ 273 (274)
+|.||+
T Consensus 95 ~V~~a~ 100 (112)
T 1x4f_A 95 KVDLSE 100 (112)
T ss_dssp EEEEEC
T ss_pred EEEECc
Confidence 999985
No 293
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=3.4e-17 Score=117.06 Aligned_cols=76 Identities=16% Similarity=0.261 Sum_probs=70.5
Q ss_pred CCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 024018 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALS 270 (274)
Q Consensus 191 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~ 270 (274)
..+.++|||+|||..+++++|+++|++ ||.|.++.+.+ .+|||||+|.+.++|.+|++.|+|..++|+.|+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~~~~------~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEK-YGKAGEVFIHK------DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVR 84 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTST-TCCCSEEEEET------TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhh-cCCeEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEE
Confidence 445789999999999999999999999 99999998873 37999999999999999999999999999999999
Q ss_pred Eee
Q 024018 271 YLY 273 (274)
Q Consensus 271 ~a~ 273 (274)
||+
T Consensus 85 ~a~ 87 (99)
T 2cpj_A 85 FAC 87 (99)
T ss_dssp ESS
T ss_pred EcC
Confidence 985
No 294
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.70 E-value=7.1e-17 Score=131.58 Aligned_cols=81 Identities=23% Similarity=0.312 Sum_probs=76.3
Q ss_pred CCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 024018 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271 (274)
Q Consensus 192 ~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~ 271 (274)
.+.++|||+|||..+++++|+++|++ ||.|.+|.|+++..+|+++|||||+|.+.++|.+|++.++|..+.|+.|++.+
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~-~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSP-AGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHh-hCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 34689999999999999999999999 99999999999999999999999999999999999999999999999999998
Q ss_pred ee
Q 024018 272 LY 273 (274)
Q Consensus 272 a~ 273 (274)
+.
T Consensus 92 ~~ 93 (213)
T 4f02_A 92 SQ 93 (213)
T ss_dssp CC
T ss_pred cc
Confidence 74
No 295
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.70 E-value=2.1e-17 Score=126.33 Aligned_cols=85 Identities=18% Similarity=0.354 Sum_probs=73.3
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHhccCceEEE------EEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEE
Q 024018 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDI------ELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTL 171 (274)
Q Consensus 98 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v------~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i 171 (274)
...++|||+|||+.+++++|+++|+.||.|..+ .+....+|.++|||||+|.+.++|.+|+..|||..+.|+.|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 456789999999999999999999999998763 12222468899999999999999999999999999999999
Q ss_pred EEeecccccCC
Q 024018 172 KVNYAKIKKKN 182 (274)
Q Consensus 172 ~v~~~~~~~~~ 182 (274)
.|.++......
T Consensus 123 ~V~~a~~~~~~ 133 (143)
T 3egn_A 123 VVQFARSARPK 133 (143)
T ss_dssp EEEECCCSCC-
T ss_pred EEEECCCCCCc
Confidence 99999876543
No 296
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.70 E-value=2.7e-17 Score=119.96 Aligned_cols=92 Identities=23% Similarity=0.377 Sum_probs=77.0
Q ss_pred cCcEEEEeecccccCCCCCCCCCCCCCccceEEecCCcc-ccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEc
Q 024018 167 EGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFE-ARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFK 245 (274)
Q Consensus 167 ~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~-~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~ 245 (274)
.|+.|.+..+....... .....++|||+|||.. +++++|+++|+. ||.|.++.+ ++|||||+|.
T Consensus 6 ~g~~~~~~~s~~~~~~~------~~~~~~~l~V~nl~~~~~t~~~l~~~F~~-~G~v~~v~i--------~~g~afV~f~ 70 (110)
T 1wf1_A 6 SGMSLKLQASNVTNKND------PKSINSRVFIGNLNTALVKKSDVETIFSK-YGRVAGCSV--------HKGYAFVQYS 70 (110)
T ss_dssp CSCCCCCCCCCSCCSCC------CTTCSSEEEECSCCCSSCCHHHHHHHHGG-GSCCSEEEE--------ETTEEEEECS
T ss_pred CCcccccccCCCCCCCC------CCCCCcEEEEeCCCcccCCHHHHHHHHHh-CCCeEEEEE--------eCCEEEEEEC
Confidence 45566666555433221 2233589999999999 999999999999 999999988 4799999999
Q ss_pred CHHHHHHHHHHhCCceeCCeEEEEEEee
Q 024018 246 SKKVAETAISAFQGKVIMCLVIALSYLY 273 (274)
Q Consensus 246 ~~~~a~~A~~~l~g~~i~g~~i~v~~a~ 273 (274)
+.++|.+|++.|+|..++|+.|+|.||+
T Consensus 71 ~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 98 (110)
T 1wf1_A 71 NERHARAAVLGENGRVLAGQTLDINMAG 98 (110)
T ss_dssp SSHHHHHHHHHHTTCEETTEECCEEESC
T ss_pred CHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 9999999999999999999999999985
No 297
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.53 E-value=1.2e-18 Score=128.49 Aligned_cols=81 Identities=19% Similarity=0.222 Sum_probs=76.6
Q ss_pred CCccceEEecCCccccHHHHHHHHhhcCCceEE--------EEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeC
Q 024018 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVS--------AEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263 (274)
Q Consensus 192 ~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~--------~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~ 263 (274)
.+.++|||+|||..+++++|+++|+. ||.|.. +.++.+..+|.++|||||+|.+.++|.+|++.|||..++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQ-IGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 34688999999999999999999999 999998 889999888999999999999999999999999999999
Q ss_pred CeEEEEEEee
Q 024018 264 CLVIALSYLY 273 (274)
Q Consensus 264 g~~i~v~~a~ 273 (274)
|+.|+|.||+
T Consensus 84 g~~l~V~~a~ 93 (116)
T 2lcw_A 84 GNPIKVSFAT 93 (116)
Confidence 9999999985
No 298
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=3.6e-17 Score=119.50 Aligned_cols=74 Identities=14% Similarity=0.049 Sum_probs=69.2
Q ss_pred CccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 024018 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSYL 272 (274)
Q Consensus 193 ~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a 272 (274)
..++|||+|||..+++++|+++|+. ||.|.++.++ .++|||||+|.+.++|.+|++.|||..++|+.|.|.||
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~-~G~i~~v~i~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 81 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSR-FGSLGRVLLP------EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWA 81 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHT-TSCEEEEECC------SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEe------CCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3678999999999999999999999 9999999875 25789999999999999999999999999999999998
Q ss_pred e
Q 024018 273 Y 273 (274)
Q Consensus 273 ~ 273 (274)
+
T Consensus 82 ~ 82 (111)
T 1whx_A 82 P 82 (111)
T ss_dssp E
T ss_pred C
Confidence 6
No 299
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.70 E-value=3.5e-18 Score=129.41 Aligned_cols=120 Identities=14% Similarity=0.127 Sum_probs=71.4
Q ss_pred eEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeecccccCCCCCCCCCCCCCccceEEecCCccccHHHHHHHHhhcCCc
Q 024018 142 GLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWD 221 (274)
Q Consensus 142 g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~ 221 (274)
|+||.+|.-++.+..++..+.. .+.|...--.... ..........++|||+|||+.+++++|+++|+. ||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~-~~gg~~~g~~~g~-------~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~-~G- 71 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMAS-MTGGQQMGRGSGD-------SEFTVQSTTGHCVHMRGLPYKATENDIYNFFSP-LN- 71 (139)
T ss_dssp ---------------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCS-CC-
T ss_pred CcccccccCccccchhcccchh-ccCCCCCCCCCCC-------cccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHh-cC-
Confidence 6788888888777777665332 2333222111000 001122334678999999999999999999999 89
Q ss_pred eEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEee
Q 024018 222 VVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSYLY 273 (274)
Q Consensus 222 v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a~ 273 (274)
|.+|.|+.++. |+++|||||+|.+.++|.+|+ .+|+..++|+.|+|.++.
T Consensus 72 i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 72 PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNS 121 (139)
T ss_dssp CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECC
T ss_pred CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECC
Confidence 66999999876 999999999999999999999 689999999999998764
No 300
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.1e-16 Score=112.88 Aligned_cols=74 Identities=19% Similarity=0.238 Sum_probs=69.0
Q ss_pred CCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 024018 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALS 270 (274)
Q Consensus 191 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~ 270 (274)
..+.++|||+|||..+++++|+++|+. ||.|.++.++ ++||||+|.+.++|.+|++.|||..+.|+.|+|+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~v~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 77 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEE-YGPVIECDIV--------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 77 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHT-TSCCCEEEEC--------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 445789999999999999999999999 9999999885 4599999999999999999999999999999999
Q ss_pred Eee
Q 024018 271 YLY 273 (274)
Q Consensus 271 ~a~ 273 (274)
||+
T Consensus 78 ~a~ 80 (92)
T 2dgt_A 78 LST 80 (92)
T ss_dssp ESS
T ss_pred Ecc
Confidence 985
No 301
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.6e-16 Score=112.42 Aligned_cols=74 Identities=23% Similarity=0.267 Sum_probs=68.3
Q ss_pred CCCccceEEecCCccccHHHHHHHHhhcC--CceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEE
Q 024018 191 PFATFNLFIANLSFEARAKDLREFFISEG--WDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIA 268 (274)
Q Consensus 191 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~~--G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~ 268 (274)
..+.++|||+|||..+++++|+++|+. | |.|.++.+. +|||||+|.+.++|.+|+..|||..+.|+.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNN-IKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIE 82 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHT-TSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHh-cCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 345689999999999999999999999 9 899988763 68999999999999999999999999999999
Q ss_pred EEEee
Q 024018 269 LSYLY 273 (274)
Q Consensus 269 v~~a~ 273 (274)
|.||+
T Consensus 83 v~~a~ 87 (99)
T 2cpd_A 83 VTLAK 87 (99)
T ss_dssp EECCC
T ss_pred EEECC
Confidence 99985
No 302
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.69 E-value=1.3e-16 Score=124.38 Aligned_cols=79 Identities=28% Similarity=0.399 Sum_probs=76.1
Q ss_pred ccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEee
Q 024018 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSYLY 273 (274)
Q Consensus 194 ~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a~ 273 (274)
.++|||+|||..+++++|+++|+. ||.|.++.++.+..+|.++|||||+|.+.++|.+|++.|+|..+.|+.|+|.|++
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~-~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGS-IGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHT-TSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHh-cCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 578999999999999999999998 9999999999999889999999999999999999999999999999999999974
No 303
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.69 E-value=3e-17 Score=116.67 Aligned_cols=77 Identities=27% Similarity=0.361 Sum_probs=69.8
Q ss_pred CCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 024018 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALS 270 (274)
Q Consensus 191 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~ 270 (274)
..+.++|||+|||..+++++|+++|+. ||.|..+ ..+|.++|||||+|.+.++|.+|++.|+|..++|+.|+|.
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~-~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 86 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFED-ALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 86 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCS-EEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhh-CCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 345789999999999999999999998 8888655 3457899999999999999999999999999999999999
Q ss_pred Eee
Q 024018 271 YLY 273 (274)
Q Consensus 271 ~a~ 273 (274)
||+
T Consensus 87 ~a~ 89 (96)
T 1fjc_A 87 YTG 89 (96)
T ss_dssp ECS
T ss_pred EcC
Confidence 984
No 304
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=8.3e-17 Score=114.32 Aligned_cols=78 Identities=31% Similarity=0.389 Sum_probs=70.6
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCceEEEE-EeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeecc
Q 024018 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (274)
Q Consensus 99 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~-~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 177 (274)
..++|||+|||+++++++|+++|+.||.|..++ ++.++. .|.|||+|.+.++|.+|++.|||..++|+.|+|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~---~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 90 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSE---TAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIP 90 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSS---SEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 567899999999999999999999999999994 776643 3349999999999999999999999999999999998
Q ss_pred cc
Q 024018 178 IK 179 (274)
Q Consensus 178 ~~ 179 (274)
++
T Consensus 91 ~~ 92 (96)
T 2e44_A 91 DE 92 (96)
T ss_dssp CC
T ss_pred cc
Confidence 76
No 305
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.69 E-value=1.8e-16 Score=123.49 Aligned_cols=80 Identities=23% Similarity=0.421 Sum_probs=75.7
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecC-CCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeec
Q 024018 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (274)
Q Consensus 98 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 176 (274)
...++|||+|||..+++++|+++|+.||.|..+.+..+. +|.++|+|||+|.+.++|.+|++.|+|..++|+.|+|.|+
T Consensus 85 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 164 (166)
T 3md3_A 85 DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 164 (166)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEec
Confidence 356789999999999999999999999999999999985 5899999999999999999999999999999999999998
Q ss_pred c
Q 024018 177 K 177 (274)
Q Consensus 177 ~ 177 (274)
+
T Consensus 165 ~ 165 (166)
T 3md3_A 165 A 165 (166)
T ss_dssp C
T ss_pred C
Confidence 6
No 306
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.69 E-value=1.3e-16 Score=114.83 Aligned_cols=73 Identities=19% Similarity=0.240 Sum_probs=68.3
Q ss_pred CCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 024018 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271 (274)
Q Consensus 192 ~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~ 271 (274)
.+.++|||+|||..+++++|+++|+. ||.|.++.++ ++||||+|.+.++|.+|++.|||..+.|+.|+|.|
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~-~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQ-FGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVF 79 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHH-HSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEE
Confidence 44689999999999999999999999 9999999885 56999999999999999999999999999999999
Q ss_pred ee
Q 024018 272 LY 273 (274)
Q Consensus 272 a~ 273 (274)
|+
T Consensus 80 a~ 81 (103)
T 2dgu_A 80 AK 81 (103)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 307
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.1e-16 Score=112.31 Aligned_cols=74 Identities=24% Similarity=0.410 Sum_probs=68.8
Q ss_pred CCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 024018 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALS 270 (274)
Q Consensus 191 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~ 270 (274)
..+.++|||+|||..+++++|+++|+. ||.|.++.++ ++||||+|.+.++|.+|++.|||..++|+.|+|.
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~~~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 76 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFER-RGRVIECDVV--------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVE 76 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHH-HSCEEEEEEC--------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHc-CCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 345789999999999999999999999 9999999886 4599999999999999999999999999999999
Q ss_pred Eee
Q 024018 271 YLY 273 (274)
Q Consensus 271 ~a~ 273 (274)
||+
T Consensus 77 ~a~ 79 (90)
T 2dnp_A 77 LST 79 (90)
T ss_dssp ESC
T ss_pred ECC
Confidence 985
No 308
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.69 E-value=2.3e-16 Score=113.77 Aligned_cols=81 Identities=15% Similarity=0.071 Sum_probs=72.1
Q ss_pred CCccceEEecCCc-----cccHHHHHHHHhhcCCceEEEEEEEcCCC-CCCccEEEEEEcCHHHHHHHHHHhCCceeCCe
Q 024018 192 FATFNLFIANLSF-----EARAKDLREFFISEGWDVVSAEVIFHDNP-RRSAGYGFVSFKSKKVAETAISAFQGKVIMCL 265 (274)
Q Consensus 192 ~~~~~l~V~nlp~-----~~~~~~l~~~f~~~~G~v~~~~i~~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~ 265 (274)
.++++|+|.|+.. .-++++|++.|++ ||.|.++.|+.++.+ ++++|+|||+|.+.++|.+|++.|||++++||
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~-~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEK-YGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGG-GSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHh-cCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 4578999999963 2378999999998 999999999998654 68899999999999999999999999999999
Q ss_pred EEEEEEee
Q 024018 266 VIALSYLY 273 (274)
Q Consensus 266 ~i~v~~a~ 273 (274)
.|.|.|+.
T Consensus 85 ~i~v~~a~ 92 (105)
T 2pe8_A 85 VVKACFYN 92 (105)
T ss_dssp ECEEEECC
T ss_pred EEEEEEcC
Confidence 99999984
No 309
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.69 E-value=8.8e-17 Score=112.00 Aligned_cols=72 Identities=31% Similarity=0.560 Sum_probs=66.9
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHhcc----C-------ceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCee
Q 024018 98 YSKTRLVAQNVPWTSTHEDIRALFEQH----G-------TVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEF 166 (274)
Q Consensus 98 ~~~~~l~v~nLp~~~t~~~L~~~f~~~----G-------~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~ 166 (274)
...++|||+|||+++++++|+++|+.| | .|.++.+.++ +|||||+|.+.++|.+|+ .|+|..+
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-----kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-----SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-----CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 356889999999999999999999999 8 8999998755 899999999999999999 8999999
Q ss_pred cCcEEEEee
Q 024018 167 EGRTLKVNY 175 (274)
Q Consensus 167 ~g~~i~v~~ 175 (274)
+|+.|+|++
T Consensus 78 ~g~~l~V~r 86 (87)
T 2hzc_A 78 QGQSLKIRR 86 (87)
T ss_dssp TTEECEEEC
T ss_pred CCeEEEEeC
Confidence 999999974
No 310
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.69 E-value=1.8e-16 Score=117.82 Aligned_cols=75 Identities=13% Similarity=0.240 Sum_probs=68.6
Q ss_pred ccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccE-EEEEEcCHHHHHHHHHHhCCceeCC--eEEEEE
Q 024018 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY-GFVSFKSKKVAETAISAFQGKVIMC--LVIALS 270 (274)
Q Consensus 194 ~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~-afV~f~~~~~a~~A~~~l~g~~i~g--~~i~v~ 270 (274)
-..|||+||++.+++++|+++|++ ||.|.+|.++.+ .+|+ |||+|.+.++|.+|++.|||..|.| +.|+|.
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~-yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSK-FGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTT-SSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred eEEEEECCCCCCCCHHHHHHHHhC-cCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEE
Confidence 456889999999999999999999 999999988764 2577 9999999999999999999999988 999999
Q ss_pred EeeC
Q 024018 271 YLYL 274 (274)
Q Consensus 271 ~a~l 274 (274)
||+.
T Consensus 102 ~ak~ 105 (130)
T 3zzy_A 102 FSKL 105 (130)
T ss_dssp ECSC
T ss_pred ecCC
Confidence 9974
No 311
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.69 E-value=7.1e-17 Score=127.65 Aligned_cols=81 Identities=21% Similarity=0.267 Sum_probs=76.5
Q ss_pred CCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 024018 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALS 270 (274)
Q Consensus 191 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~ 270 (274)
..+.++|||+|||..+++++|+++|+. ||.|.+|.++.+. +|.++|||||+|.+.++|.+|++.|||..++|+.|+|.
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~-~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAE-FGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHH-TSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 344689999999999999999999999 9999999999888 89999999999999999999999999999999999999
Q ss_pred Eee
Q 024018 271 YLY 273 (274)
Q Consensus 271 ~a~ 273 (274)
||.
T Consensus 163 ~a~ 165 (177)
T 2f3j_A 163 LVA 165 (177)
T ss_dssp EES
T ss_pred Eec
Confidence 984
No 312
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.69 E-value=1.8e-16 Score=117.33 Aligned_cols=75 Identities=25% Similarity=0.254 Sum_probs=68.1
Q ss_pred CeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeE-EEEEECCHHHHHHHHHHcCCCeecC--cEEEEeecc
Q 024018 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGL-AFVTMGSPDEATAALNNLESYEFEG--RTLKVNYAK 177 (274)
Q Consensus 101 ~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~-afv~f~~~~~a~~a~~~l~~~~~~g--~~i~v~~~~ 177 (274)
..|||+||++.+++++|+++|++||.|.+|.|... .|| |||+|.+.++|.+|++.|||..|.| +.|+|.+++
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 34789999999999999999999999999999653 386 9999999999999999999999987 699999998
Q ss_pred ccc
Q 024018 178 IKK 180 (274)
Q Consensus 178 ~~~ 180 (274)
++.
T Consensus 101 ~~~ 103 (124)
T 2e5i_A 101 PTR 103 (124)
T ss_dssp CSC
T ss_pred CCc
Confidence 765
No 313
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.69 E-value=4.3e-17 Score=117.19 Aligned_cols=78 Identities=19% Similarity=0.287 Sum_probs=73.4
Q ss_pred CCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 024018 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271 (274)
Q Consensus 192 ~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~ 271 (274)
...++|||+|||..+++++|+++|+. ||.|.++.++.+. +|.++|||||+|.+.++|.+|++ +|..++|+.|.|.+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~ 82 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFAR-YGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGP 82 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGG-GSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-CCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEE
Confidence 34689999999999999999999999 9999999999998 89999999999999999999999 99999999999998
Q ss_pred ee
Q 024018 272 LY 273 (274)
Q Consensus 272 a~ 273 (274)
+.
T Consensus 83 a~ 84 (102)
T 2xs2_A 83 AI 84 (102)
T ss_dssp EE
T ss_pred CC
Confidence 74
No 314
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.68 E-value=1.5e-16 Score=111.36 Aligned_cols=77 Identities=22% Similarity=0.326 Sum_probs=62.7
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCe--ecCcEEEEe
Q 024018 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYE--FEGRTLKVN 174 (274)
Q Consensus 97 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~--~~g~~i~v~ 174 (274)
.....+|||+|||+++|+++|+++|++||.|.++.++++ ++|||||+|.+.++|.+ ++|.. ++|+.|.|.
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~ 79 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHIS 79 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEE
Confidence 346678999999999999999999999999999999874 69999999999999984 35544 459999999
Q ss_pred ecccccC
Q 024018 175 YAKIKKK 181 (274)
Q Consensus 175 ~~~~~~~ 181 (274)
++.++..
T Consensus 80 ~a~~k~~ 86 (89)
T 3d2w_A 80 NAEPKHN 86 (89)
T ss_dssp ECC----
T ss_pred EcCCCCc
Confidence 9987643
No 315
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.68 E-value=3e-17 Score=117.80 Aligned_cols=73 Identities=22% Similarity=0.330 Sum_probs=69.1
Q ss_pred cceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEee
Q 024018 195 FNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSYLY 273 (274)
Q Consensus 195 ~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a~ 273 (274)
++|||+|||..+++++|+++|++ ||.|.++.++.+ ++|||||+|.+.++|.+|++.|+|..++|+.|+|.||+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 73 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSY-YGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELST 73 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHH-HCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEcc
Confidence 37999999999999999999999 999999999876 68999999999999999999999999999999999984
No 316
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.68 E-value=1.1e-16 Score=125.08 Aligned_cols=80 Identities=21% Similarity=0.316 Sum_probs=76.6
Q ss_pred CccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 024018 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSYL 272 (274)
Q Consensus 193 ~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a 272 (274)
+.++|||+|||..+++++|+++|+. ||.|.++.++.+..+|.++|||||+|.+.++|.+|++.|+|..+.|+.|+|.|+
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 80 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRA-IGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYA 80 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHT-TSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEec
Confidence 3688999999999999999999998 999999999999888999999999999999999999999999999999999997
Q ss_pred e
Q 024018 273 Y 273 (274)
Q Consensus 273 ~ 273 (274)
.
T Consensus 81 ~ 81 (168)
T 1b7f_A 81 R 81 (168)
T ss_dssp C
T ss_pred C
Confidence 4
No 317
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=3.3e-17 Score=121.52 Aligned_cols=76 Identities=20% Similarity=0.226 Sum_probs=70.3
Q ss_pred ccceEEecCCccccHHHHHHHHhhcCCce----EEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEE
Q 024018 194 TFNLFIANLSFEARAKDLREFFISEGWDV----VSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIAL 269 (274)
Q Consensus 194 ~~~l~V~nlp~~~~~~~l~~~f~~~~G~v----~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v 269 (274)
..+|||+|||+.+++++|+++|+. ||.| .+|.|+.+. +|+++|||||+|.+.++|.+|++. |+..++||.|+|
T Consensus 23 ~~~v~V~nLp~~~te~dl~~~F~~-~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 23 QVIVRMRGLPFTATAEEVVAFFGQ-HCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp CCEEEECSCCTTCCHHHHHHHHHT-TSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh-hCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 578999999999999999999999 8875 689999884 799999999999999999999996 999999999999
Q ss_pred EEe
Q 024018 270 SYL 272 (274)
Q Consensus 270 ~~a 272 (274)
..|
T Consensus 100 ~~a 102 (123)
T 2dha_A 100 FRS 102 (123)
T ss_dssp EEE
T ss_pred EEC
Confidence 876
No 318
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.3e-16 Score=110.53 Aligned_cols=74 Identities=23% Similarity=0.290 Sum_probs=66.4
Q ss_pred CeEEEeCCCCCCCHHH----HHHHHhcc-CceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEee
Q 024018 101 TRLVAQNVPWTSTHED----IRALFEQH-GTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (274)
Q Consensus 101 ~~l~v~nLp~~~t~~~----L~~~f~~~-G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 175 (274)
+.|||+|||+.+++++ |+++|++| |.|.+| + .|+|||.|.+.++|.+|++.|+|..+.||+|+|.+
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V------t---gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~ 80 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI------T---GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSF 80 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC------C---TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEES
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE------e---cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEe
Confidence 3499999999999988 55899999 599998 2 39999999999999999999999999999999999
Q ss_pred cccccCCC
Q 024018 176 AKIKKKNP 183 (274)
Q Consensus 176 ~~~~~~~~ 183 (274)
++.+.+.-
T Consensus 81 A~~~sd~~ 88 (96)
T 2diu_A 81 TPKNRELC 88 (96)
T ss_dssp SCCSCCCC
T ss_pred cCCCccee
Confidence 99876653
No 319
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.68 E-value=2.7e-16 Score=127.93 Aligned_cols=87 Identities=18% Similarity=0.380 Sum_probs=80.6
Q ss_pred ccCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecC-CCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEe
Q 024018 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174 (274)
Q Consensus 96 ~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 174 (274)
.....++|||+|||..+++++|+++|+.||.|..+.+..+. +|+++|||||+|.+.++|.+|++.|||..++|+.|+|.
T Consensus 121 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~ 200 (216)
T 2qfj_A 121 EARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVG 200 (216)
T ss_dssp HHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred ccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEE
Confidence 34567899999999999999999999999999999999986 58999999999999999999999999999999999999
Q ss_pred ecccccCC
Q 024018 175 YAKIKKKN 182 (274)
Q Consensus 175 ~~~~~~~~ 182 (274)
++......
T Consensus 201 ~a~~~~~~ 208 (216)
T 2qfj_A 201 KAVTPPMP 208 (216)
T ss_dssp ECSSCSST
T ss_pred EecCCCCC
Confidence 99877544
No 320
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.68 E-value=9.3e-17 Score=114.13 Aligned_cols=74 Identities=19% Similarity=0.272 Sum_probs=68.4
Q ss_pred CCCccceEEecCCc-cccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEE
Q 024018 191 PFATFNLFIANLSF-EARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIAL 269 (274)
Q Consensus 191 ~~~~~~l~V~nlp~-~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v 269 (274)
..+.++|||+|||. .+++++|+++|+. ||.|.++.+. +|||||+|.+.++|.+|++.|+|..+.|+.|+|
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~-~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSP-YGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTT-TCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHh-cCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 34578999999998 9999999999999 9999999883 789999999999999999999999999999999
Q ss_pred EEee
Q 024018 270 SYLY 273 (274)
Q Consensus 270 ~~a~ 273 (274)
.|++
T Consensus 78 ~~a~ 81 (96)
T 2kvi_A 78 EVSS 81 (96)
T ss_dssp EEEE
T ss_pred EEcC
Confidence 9985
No 321
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=8.5e-17 Score=116.97 Aligned_cols=76 Identities=16% Similarity=0.223 Sum_probs=68.4
Q ss_pred CCCccceEE--ecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCcee-----C
Q 024018 191 PFATFNLFI--ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI-----M 263 (274)
Q Consensus 191 ~~~~~~l~V--~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i-----~ 263 (274)
..++.+||| +||+..+++++|+++|++ ||.|.++.++. .+|||||+|.+.++|.+|++.|||..+ .
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~-fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~ 94 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEK-CGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 94 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHH-HSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHh-cCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCC
Confidence 345788999 779999999999999999 99999987742 379999999999999999999999998 6
Q ss_pred CeEEEEEEee
Q 024018 264 CLVIALSYLY 273 (274)
Q Consensus 264 g~~i~v~~a~ 273 (274)
|+.|.|.|++
T Consensus 95 g~~l~v~~a~ 104 (114)
T 2cq2_A 95 KITLYLNFVE 104 (114)
T ss_dssp EEECEEEEES
T ss_pred CcEEEEEecc
Confidence 8999999985
No 322
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.67 E-value=2.8e-16 Score=123.45 Aligned_cols=79 Identities=22% Similarity=0.349 Sum_probs=74.1
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeec---CcEEEEee
Q 024018 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFE---GRTLKVNY 175 (274)
Q Consensus 99 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~---g~~i~v~~ 175 (274)
..++|||+|||+.+++++|+++|+.||.|..+.+.++.+|.++|||||+|.+.++|.+|++.|||..+. |++|.|.|
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ 173 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKF 173 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEe
Confidence 567899999999999999999999999999999999988999999999999999999999999998776 49999999
Q ss_pred cc
Q 024018 176 AK 177 (274)
Q Consensus 176 ~~ 177 (274)
+.
T Consensus 174 ad 175 (175)
T 3nmr_A 174 AD 175 (175)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 323
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.67 E-value=2e-16 Score=124.10 Aligned_cols=79 Identities=18% Similarity=0.302 Sum_probs=75.2
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecC-CCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeecc
Q 024018 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (274)
Q Consensus 99 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 177 (274)
..++|||+|||+.+++++|+++|+.||.|..+.+..++ +|.++|||||+|.+.++|.+|++.|||..++|+.|.|.+|.
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 36789999999999999999999999999999999996 69999999999999999999999999999999999999873
No 324
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.67 E-value=2.1e-16 Score=121.94 Aligned_cols=76 Identities=13% Similarity=0.190 Sum_probs=69.2
Q ss_pred ccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCC--eEEEEEE
Q 024018 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC--LVIALSY 271 (274)
Q Consensus 194 ~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g--~~i~v~~ 271 (274)
..+|||+||++.+++++|+++|++ ||.|.+|.+..+ .++|||||+|.+.++|.+|++.|||..|.| +.|+|.|
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~-fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSK-FGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 120 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHH-HSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEE
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHh-cCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEE
Confidence 467899999999999999999999 999999998754 257899999999999999999999999965 9999999
Q ss_pred eeC
Q 024018 272 LYL 274 (274)
Q Consensus 272 a~l 274 (274)
|+.
T Consensus 121 Ak~ 123 (164)
T 1sjr_A 121 SKL 123 (164)
T ss_dssp CSS
T ss_pred ecC
Confidence 973
No 325
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.4e-16 Score=110.30 Aligned_cols=70 Identities=20% Similarity=0.219 Sum_probs=63.1
Q ss_pred Cccc-eEEecCCccccHHH----HHHHHhhcC-CceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeE
Q 024018 193 ATFN-LFIANLSFEARAKD----LREFFISEG-WDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLV 266 (274)
Q Consensus 193 ~~~~-l~V~nlp~~~~~~~----l~~~f~~~~-G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~ 266 (274)
+..+ |||+|||..+++++ |+++|++ | |.|.+| +| |+|||+|.+.++|.+|++.|+|..+.||.
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~-yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~ 75 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDN-CGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNR 75 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHT-TTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHH-cCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCce
Confidence 3555 99999999999988 5589999 8 599988 33 99999999999999999999999999999
Q ss_pred EEEEEee
Q 024018 267 IALSYLY 273 (274)
Q Consensus 267 i~v~~a~ 273 (274)
|+|+||+
T Consensus 76 i~v~~A~ 82 (96)
T 2diu_A 76 IIVSFTP 82 (96)
T ss_dssp CEEESSC
T ss_pred EEEEecC
Confidence 9999986
No 326
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.67 E-value=5.5e-17 Score=120.60 Aligned_cols=77 Identities=19% Similarity=0.253 Sum_probs=70.2
Q ss_pred CCccceEEecCCccccHHHHHHHHhhcCCceE--EEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEE
Q 024018 192 FATFNLFIANLSFEARAKDLREFFISEGWDVV--SAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIAL 269 (274)
Q Consensus 192 ~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~--~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v 269 (274)
....+|||+|||+.+++++|+++|+. | .|. +|.|+.++. |+++|||||+|.+.++|.+|++. ++..|+||.|+|
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~-~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V 115 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSG-L-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHRYIEV 115 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTT-S-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhc-C-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEE
Confidence 34678999999999999999999999 7 566 899998887 99999999999999999999995 789999999999
Q ss_pred EEe
Q 024018 270 SYL 272 (274)
Q Consensus 270 ~~a 272 (274)
.++
T Consensus 116 ~~a 118 (126)
T 2hgm_A 116 FKS 118 (126)
T ss_dssp EEE
T ss_pred EEC
Confidence 876
No 327
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.67 E-value=1.3e-16 Score=117.27 Aligned_cols=76 Identities=18% Similarity=0.352 Sum_probs=66.4
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcE-----EEE
Q 024018 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRT-----LKV 173 (274)
Q Consensus 99 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~-----i~v 173 (274)
..++|||+|||+++++++|+++|+.||.|..+.|+.+ |||||+|.+.++|.+||+.|||..|+|+. |+|
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v 88 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 88 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEe
Confidence 4578999999999999999999999999999999754 99999999999999999999999999998 677
Q ss_pred eeccccc
Q 024018 174 NYAKIKK 180 (274)
Q Consensus 174 ~~~~~~~ 180 (274)
..+.+..
T Consensus 89 ~~~~~~~ 95 (115)
T 3beg_B 89 KVDGPRS 95 (115)
T ss_dssp EECC---
T ss_pred ccCCCCC
Confidence 7666543
No 328
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.67 E-value=1.3e-16 Score=111.44 Aligned_cols=72 Identities=15% Similarity=0.211 Sum_probs=67.7
Q ss_pred ccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEee
Q 024018 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSYLY 273 (274)
Q Consensus 194 ~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a~ 273 (274)
.++|||+|||..+++++|+++|++ | .|.++.+. .++|||||+|.+.++|.+|++.|||..++|+.|+|+||.
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~-~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKD-Y-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCS-S-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhh-C-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 578999999999999999999999 7 89999884 578999999999999999999999999999999999985
No 329
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.67 E-value=5.3e-16 Score=124.50 Aligned_cols=85 Identities=19% Similarity=0.294 Sum_probs=79.6
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecC-CCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEee
Q 024018 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (274)
Q Consensus 97 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 175 (274)
....++|||+|||+.+++++|+++|+.||.|..+.+..++ +|.++|||||+|.+.++|.+|++.|+|..++|+.|+|.+
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3467899999999999999999999999999999999987 699999999999999999999999999999999999999
Q ss_pred cccccC
Q 024018 176 AKIKKK 181 (274)
Q Consensus 176 ~~~~~~ 181 (274)
+.++..
T Consensus 191 a~~~~~ 196 (198)
T 2yh0_A 191 ASVGAK 196 (198)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 987644
No 330
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.1e-16 Score=112.98 Aligned_cols=74 Identities=26% Similarity=0.394 Sum_probs=66.8
Q ss_pred CCccceEEecCCccccHHHHHHHHhhcCCc-eEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCC-ceeCCeEEEE
Q 024018 192 FATFNLFIANLSFEARAKDLREFFISEGWD-VVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG-KVIMCLVIAL 269 (274)
Q Consensus 192 ~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~-v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g-~~i~g~~i~v 269 (274)
.+.++|||+|||..+++++|+++|+. ||. |..+.+. ++|||||+|.+.++|.+|++.||| ..++|+.|+|
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGD-RKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHH-TTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHH-cCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 34689999999999999999999999 998 6655552 479999999999999999999999 9999999999
Q ss_pred EEee
Q 024018 270 SYLY 273 (274)
Q Consensus 270 ~~a~ 273 (274)
.||+
T Consensus 78 ~~a~ 81 (93)
T 2cqh_A 78 DYSV 81 (93)
T ss_dssp EECC
T ss_pred EEcc
Confidence 9985
No 331
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.67 E-value=3.4e-16 Score=125.48 Aligned_cols=83 Identities=18% Similarity=0.313 Sum_probs=75.7
Q ss_pred ccCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEee
Q 024018 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (274)
Q Consensus 96 ~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 175 (274)
.+...++|||+|||+.+++++|+++|+.||.|..|+|.++.+|.++|||||+|.+.++|.+|+..+ +..++|+.|.|.+
T Consensus 105 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~ 183 (193)
T 2voo_A 105 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILF 183 (193)
T ss_dssp HHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEE
T ss_pred hccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEE
Confidence 344568999999999999999999999999999999999988999999999999999999999854 5699999999998
Q ss_pred cccc
Q 024018 176 AKIK 179 (274)
Q Consensus 176 ~~~~ 179 (274)
+...
T Consensus 184 ~~~y 187 (193)
T 2voo_A 184 KDDY 187 (193)
T ss_dssp TTTC
T ss_pred hHHH
Confidence 7654
No 332
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.67 E-value=2.8e-17 Score=125.58 Aligned_cols=82 Identities=21% Similarity=0.270 Sum_probs=70.7
Q ss_pred CCCccceEEecCCccccHHHHHHHHhhcCCceEEEEE-----EEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCe
Q 024018 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEV-----IFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCL 265 (274)
Q Consensus 191 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i-----~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~ 265 (274)
..+.++|||+|||..+++++|+++|+. ||.|..+.+ +....+|.++|||||+|.+.++|.+|+..|||..+.|+
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~-~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGR-YVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGG-GCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHH-hCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 344689999999999999999999999 898876410 11123578999999999999999999999999999999
Q ss_pred EEEEEEee
Q 024018 266 VIALSYLY 273 (274)
Q Consensus 266 ~i~v~~a~ 273 (274)
.|.|.||+
T Consensus 121 ~l~V~~a~ 128 (143)
T 3egn_A 121 PMVVQFAR 128 (143)
T ss_dssp ECEEEECC
T ss_pred EEEEEECC
Confidence 99999985
No 333
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=2.1e-16 Score=112.26 Aligned_cols=76 Identities=20% Similarity=0.187 Sum_probs=69.1
Q ss_pred CccceEEecCCccccHHHHHHHHhhcCCceEEEE-EEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 024018 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAE-VIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271 (274)
Q Consensus 193 ~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~-i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~ 271 (274)
..++|||+|||..+++++|+++|+. ||.|.+++ ++.++.+ |.|||+|.+.++|.+|++.|||..++|+.|+|.|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQ-YGVVESCEQVNTDSET----AVVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHH-HSCEEEEEEECCSSSS----EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHh-cCCeEEEEEeecCCCC----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 4688999999999999999999999 99999994 7776654 3399999999999999999999999999999999
Q ss_pred ee
Q 024018 272 LY 273 (274)
Q Consensus 272 a~ 273 (274)
|.
T Consensus 89 a~ 90 (96)
T 2e44_A 89 IP 90 (96)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 334
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=3.2e-16 Score=114.97 Aligned_cols=76 Identities=14% Similarity=0.280 Sum_probs=64.4
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCC----CCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEE
Q 024018 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK----NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKV 173 (274)
Q Consensus 98 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~----~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v 173 (274)
...++|||+|||+++++++|+++|++||.|. +.++.+.. |+++|||||+|.+.++|.+|++.|+ .++|+.+.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 3568899999999999999999999999999 77776653 6899999999999999999999883 356666666
Q ss_pred eec
Q 024018 174 NYA 176 (274)
Q Consensus 174 ~~~ 176 (274)
..+
T Consensus 83 ~~~ 85 (114)
T 2dnl_A 83 VSS 85 (114)
T ss_dssp ECC
T ss_pred ccC
Confidence 544
No 335
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=7.1e-16 Score=109.73 Aligned_cols=74 Identities=14% Similarity=0.239 Sum_probs=68.0
Q ss_pred CCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 024018 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALS 270 (274)
Q Consensus 191 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~ 270 (274)
..+.++|||+|+ .+++++|+++|++ ||.|.++.+. .++|||||+|.+.++|.+|++.|+|..+.|+.|+|.
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~-~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 82 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSP-FGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 82 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTT-TSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhh-CCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 345689999996 8999999999999 9999999883 568999999999999999999999999999999999
Q ss_pred Eee
Q 024018 271 YLY 273 (274)
Q Consensus 271 ~a~ 273 (274)
||+
T Consensus 83 ~a~ 85 (97)
T 1x5p_A 83 IAR 85 (97)
T ss_dssp CCS
T ss_pred ECC
Confidence 985
No 336
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.66 E-value=2.4e-16 Score=126.35 Aligned_cols=120 Identities=16% Similarity=0.142 Sum_probs=90.8
Q ss_pred CHHHHHHHHHHc--CCCeecCcEEEEeecccccCCCCCC-CCCCCCCccceEEecCCccccHHHHHHHHhhcCCceEEEE
Q 024018 150 SPDEATAALNNL--ESYEFEGRTLKVNYAKIKKKNPFPP-VQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAE 226 (274)
Q Consensus 150 ~~~~a~~a~~~l--~~~~~~g~~i~v~~~~~~~~~~~~~-~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~ 226 (274)
+.+.+..|++.. ....+.+....|....... .+... ........++|||+|||..+++++|+++|+. ||.|..|.
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p-~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~-~G~v~~v~ 140 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKP-LPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLED-KGQVLNIQ 140 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSC-CCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTT-SCCEEEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCC-CcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhc-CCCEEEEE
Confidence 678888888866 4555666555565542111 00000 0001123578999999999999999999999 99999999
Q ss_pred EEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEee
Q 024018 227 VIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSYLY 273 (274)
Q Consensus 227 i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a~ 273 (274)
++++.. |.++|||||+|++.++|.+|+..+ +..++|+.|.|.|+.
T Consensus 141 i~~~~~-~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 141 MRRTLH-KAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKD 185 (193)
T ss_dssp EEECTT-CCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETT
T ss_pred EEECCC-CCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhH
Confidence 998764 889999999999999999999865 559999999999863
No 337
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.65 E-value=1.6e-16 Score=124.13 Aligned_cols=80 Identities=20% Similarity=0.406 Sum_probs=75.5
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecC-CCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeecc
Q 024018 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (274)
Q Consensus 99 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 177 (274)
..++|||+|||+.+++++|+++|+.||.|..+.+..++ +|.++|||||+|.+.++|.+|++ ++|..++|+.|+|.++.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 45789999999999999999999999999999999886 59999999999999999999998 89999999999999998
Q ss_pred cc
Q 024018 178 IK 179 (274)
Q Consensus 178 ~~ 179 (274)
++
T Consensus 165 pk 166 (167)
T 2cjk_A 165 PR 166 (167)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 338
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.65 E-value=1e-15 Score=110.33 Aligned_cols=82 Identities=15% Similarity=0.173 Sum_probs=72.8
Q ss_pred CCCCeEEEeCCCC-----CCCHHHHHHHHhccCceEEEEEeecCC--CCceeEEEEEECCHHHHHHHHHHcCCCeecCcE
Q 024018 98 YSKTRLVAQNVPW-----TSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAALNNLESYEFEGRT 170 (274)
Q Consensus 98 ~~~~~l~v~nLp~-----~~t~~~L~~~f~~~G~v~~v~~~~~~~--~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~ 170 (274)
..+++|+|.||.. +.++++|+++|++||.|.++.+.+++. ++++|+|||+|.+.++|.+|++.|||..++||.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3567899999963 247899999999999999999998763 688999999999999999999999999999999
Q ss_pred EEEeecccc
Q 024018 171 LKVNYAKIK 179 (274)
Q Consensus 171 i~v~~~~~~ 179 (274)
|.|.++...
T Consensus 86 i~v~~a~~~ 94 (105)
T 2pe8_A 86 VKACFYNLD 94 (105)
T ss_dssp CEEEECCHH
T ss_pred EEEEEcCHH
Confidence 999999753
No 339
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.1e-16 Score=110.36 Aligned_cols=78 Identities=22% Similarity=0.349 Sum_probs=67.3
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeeccc
Q 024018 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178 (274)
Q Consensus 99 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 178 (274)
..++|||+|||+++++++|+++|+.||.|.++.++.+ ++|||||+|.+.++|++|+. .+..+.|+.|+|.++.+
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAEP 77 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecCC
Confidence 4688999999999999999999999999999999764 68999999999999986543 24556899999999987
Q ss_pred ccCC
Q 024018 179 KKKN 182 (274)
Q Consensus 179 ~~~~ 182 (274)
+...
T Consensus 78 ~~~~ 81 (88)
T 1wf0_A 78 KHNS 81 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7554
No 340
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.65 E-value=5.9e-16 Score=138.85 Aligned_cols=84 Identities=19% Similarity=0.341 Sum_probs=78.2
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecC-CCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeec
Q 024018 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (274)
Q Consensus 98 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 176 (274)
...++|||+|||+.+|+++|.++|+.||.|..|.|+.+. +|.++|||||+|.+.++|.+||..|||..|.|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 345789999999999999999999999999999999886 5899999999999999999999999999999999999999
Q ss_pred ccccC
Q 024018 177 KIKKK 181 (274)
Q Consensus 177 ~~~~~ 181 (274)
.....
T Consensus 180 ~~~~~ 184 (437)
T 3pgw_S 180 RGRTV 184 (437)
T ss_pred CCCCC
Confidence 87544
No 341
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.65 E-value=7.7e-16 Score=123.32 Aligned_cols=81 Identities=27% Similarity=0.397 Sum_probs=76.2
Q ss_pred CCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 024018 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALS 270 (274)
Q Consensus 191 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~ 270 (274)
....++|||+|||..+++++|+++|+. ||.|.++.++.+..+|.++|||||+|.+.++|.+|++. +|..+.|+.|.|.
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQ-WGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPK 87 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeee
Confidence 445789999999999999999999999 99999999999999999999999999999999999986 9999999999999
Q ss_pred Eee
Q 024018 271 YLY 273 (274)
Q Consensus 271 ~a~ 273 (274)
++.
T Consensus 88 ~~~ 90 (196)
T 1l3k_A 88 RAV 90 (196)
T ss_dssp ECC
T ss_pred ccc
Confidence 874
No 342
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.65 E-value=7.5e-16 Score=114.01 Aligned_cols=72 Identities=21% Similarity=0.197 Sum_probs=65.5
Q ss_pred cceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccE-EEEEEcCHHHHHHHHHHhCCceeCC--eEEEEEE
Q 024018 195 FNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY-GFVSFKSKKVAETAISAFQGKVIMC--LVIALSY 271 (274)
Q Consensus 195 ~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~-afV~f~~~~~a~~A~~~l~g~~i~g--~~i~v~~ 271 (274)
..|||+||++.+++++|+++|++ ||.|.+|.++.. .|| |||+|.+.++|.+|++.|||..|.| +.|+|.|
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~-yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~ 98 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNP-VGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEY 98 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTT-TSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEEC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHh-cCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEE
Confidence 34679999999999999999999 999999998652 286 9999999999999999999999987 6999999
Q ss_pred ee
Q 024018 272 LY 273 (274)
Q Consensus 272 a~ 273 (274)
|+
T Consensus 99 Ak 100 (124)
T 2e5i_A 99 AR 100 (124)
T ss_dssp CS
T ss_pred ec
Confidence 87
No 343
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=5.7e-16 Score=109.57 Aligned_cols=73 Identities=12% Similarity=0.165 Sum_probs=66.6
Q ss_pred ccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEee
Q 024018 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSYLY 273 (274)
Q Consensus 194 ~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a~ 273 (274)
.++|||+|||..+++++|+++|+. ||.|.+| +.+..+|. ||||+|.+.++|.+|++ |+|..++|+.|+|.+|.
T Consensus 8 ~~~l~V~nl~~~~t~~~l~~~F~~-~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 8 LRSVFVSGFPRGVDSAQLSEYFLA-FGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp CCEEEEECCCTTCCHHHHHHHGGG-TSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHh-cCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECC
Confidence 578999999999999999999998 9999987 66666554 99999999999999999 99999999999998763
No 344
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.63 E-value=6.2e-16 Score=114.55 Aligned_cols=77 Identities=26% Similarity=0.339 Sum_probs=70.5
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeecc
Q 024018 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (274)
Q Consensus 98 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 177 (274)
...++|||+|| ++++++|+++|+.||.|.+|.+. .++|||||+|.+.++|.+|++.|+|..+.|+.|+|.++.
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~ 109 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 109 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeC
Confidence 45788999996 79999999999999999999986 458999999999999999999999999999999999998
Q ss_pred cccC
Q 024018 178 IKKK 181 (274)
Q Consensus 178 ~~~~ 181 (274)
.+..
T Consensus 110 ~~~~ 113 (121)
T 2bz2_A 110 KQPM 113 (121)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 7644
No 345
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.62 E-value=1e-15 Score=123.97 Aligned_cols=75 Identities=11% Similarity=0.115 Sum_probs=70.1
Q ss_pred CccceEEecCC-ccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 024018 193 ATFNLFIANLS-FEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSY 271 (274)
Q Consensus 193 ~~~~l~V~nlp-~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~ 271 (274)
++++|||+||| ..+++++|+++|+. ||.|.++.++++ .+|||||+|.+.++|.+|++.|||..+.|+.|+|.|
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~-~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 76 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCL-YGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCV 76 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTT-TSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHh-cCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 46899999999 89999999999998 999999999754 479999999999999999999999999999999999
Q ss_pred ee
Q 024018 272 LY 273 (274)
Q Consensus 272 a~ 273 (274)
|+
T Consensus 77 s~ 78 (205)
T 3tyt_A 77 SK 78 (205)
T ss_dssp CS
T ss_pred cc
Confidence 85
No 346
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.62 E-value=1.3e-15 Score=106.60 Aligned_cols=73 Identities=21% Similarity=0.314 Sum_probs=62.3
Q ss_pred CCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCcee--CCeEEE
Q 024018 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI--MCLVIA 268 (274)
Q Consensus 191 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i--~g~~i~ 268 (274)
..+..+|||+|||+.+++++|+++|++ ||.|.++.++.+ ++|||||+|++.++|.+ ++|..+ .|+.|.
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~-~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~ 77 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQ-YGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVH 77 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTT-TSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhc-cCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEE
Confidence 345789999999999999999999999 999999999764 68999999999999983 566554 599999
Q ss_pred EEEee
Q 024018 269 LSYLY 273 (274)
Q Consensus 269 v~~a~ 273 (274)
|++|+
T Consensus 78 v~~a~ 82 (89)
T 3d2w_A 78 ISNAE 82 (89)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 99985
No 347
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.62 E-value=1.1e-15 Score=120.37 Aligned_cols=78 Identities=21% Similarity=0.451 Sum_probs=71.9
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeecc
Q 024018 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (274)
Q Consensus 98 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 177 (274)
...++|||+|||..+++++|+++|+.||.|..+ ..+|.++|||||+|.+.++|.+|++.|+|..++|+.|+|.++.
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECS
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecC
Confidence 356789999999999999999999999988766 5568899999999999999999999999999999999999997
Q ss_pred cc
Q 024018 178 IK 179 (274)
Q Consensus 178 ~~ 179 (274)
++
T Consensus 173 ~k 174 (175)
T 1fje_B 173 EK 174 (175)
T ss_dssp SC
T ss_pred CC
Confidence 65
No 348
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.62 E-value=5.3e-16 Score=113.97 Aligned_cols=71 Identities=20% Similarity=0.213 Sum_probs=64.2
Q ss_pred ccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeE-----EE
Q 024018 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLV-----IA 268 (274)
Q Consensus 194 ~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~-----i~ 268 (274)
.++|||+|||..+++++|+++|+. ||.|.++.++.+ |||||+|.+.++|.+|++.|||..|+|+. |+
T Consensus 16 ~~~l~V~nLp~~~t~~~l~~~F~~-~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 16 ENRVVVSGLPPSGSWQDLKDHMRE-AGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp -CCEEEEECCSSCCTTHHHHHHGG-GSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 588999999999999999999998 999999998654 89999999999999999999999999998 55
Q ss_pred EEEe
Q 024018 269 LSYL 272 (274)
Q Consensus 269 v~~a 272 (274)
|..+
T Consensus 88 v~~~ 91 (115)
T 3beg_B 88 VKVD 91 (115)
T ss_dssp EEEC
T ss_pred eccC
Confidence 5543
No 349
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.62 E-value=1.3e-15 Score=105.99 Aligned_cols=72 Identities=18% Similarity=0.378 Sum_probs=65.8
Q ss_pred CCccceEEecCCccccHHHHHHHHhhcC----C-------ceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCc
Q 024018 192 FATFNLFIANLSFEARAKDLREFFISEG----W-------DVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260 (274)
Q Consensus 192 ~~~~~l~V~nlp~~~~~~~l~~~f~~~~----G-------~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~ 260 (274)
.+.++|||+|||..+++++|+++|+. | | .|.++.+.. .+|||||+|.+.++|.+|+ .|||.
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~~~~~g~~~~~~~~v~~~~~~~------~kg~afV~f~~~~~a~~A~-~l~g~ 75 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNA-QMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGI 75 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHH-HHHHTTCCSSSSCSEEEEEECS------SSSEEEEEESSHHHHHHHG-GGTTC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHH-HhhhcccccCCCCcceEEEecC------CCcEEEEEcCCHHHHHHHH-hcCCC
Confidence 34789999999999999999999999 7 8 899988853 3899999999999999999 99999
Q ss_pred eeCCeEEEEEE
Q 024018 261 VIMCLVIALSY 271 (274)
Q Consensus 261 ~i~g~~i~v~~ 271 (274)
.++|+.|+|+.
T Consensus 76 ~~~g~~l~V~r 86 (87)
T 2hzc_A 76 IFQGQSLKIRR 86 (87)
T ss_dssp EETTEECEEEC
T ss_pred EECCeEEEEeC
Confidence 99999999974
No 350
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.61 E-value=1e-15 Score=125.68 Aligned_cols=80 Identities=19% Similarity=0.236 Sum_probs=71.5
Q ss_pred cCCCCeEEEeCCCCCC---------CHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCee-
Q 024018 97 EYSKTRLVAQNVPWTS---------THEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEF- 166 (274)
Q Consensus 97 ~~~~~~l~v~nLp~~~---------t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~- 166 (274)
....++||||||+..+ ++++|+++|++||.|++|+++.+ +|||||+|.+.++|++|++.|+|..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~-----kG~AFV~F~~~~~Ae~A~~am~g~~l~ 205 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES-----KNCGFVKFKYQANAEFAKEAMSNQTLL 205 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG-----GTEEEEEESSHHHHHHHHHHHTTCCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC-----CCEEEEEeCCHHHHHHHHHHhCCCEEe
Confidence 4467899999999998 79999999999999999999864 89999999999999999999999999
Q ss_pred -----------cCcEEEEeecccccC
Q 024018 167 -----------EGRTLKVNYAKIKKK 181 (274)
Q Consensus 167 -----------~g~~i~v~~~~~~~~ 181 (274)
.|+.|.|.|+.....
T Consensus 206 ~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 206 LPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CTTSTTGGGGGGSCCCEEEECC----
T ss_pred ccccccccccCCCCEEEEEEccCCCC
Confidence 899999999986543
No 351
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=7.6e-16 Score=112.96 Aligned_cols=76 Identities=17% Similarity=0.273 Sum_probs=65.4
Q ss_pred CccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCC---CCCccEEEEEEcCHHHHHHHHHHh---CCc------
Q 024018 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNP---RRSAGYGFVSFKSKKVAETAISAF---QGK------ 260 (274)
Q Consensus 193 ~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~---g~~~g~afV~f~~~~~a~~A~~~l---~g~------ 260 (274)
..++|||+|||..+++++|+++|++ ||.|. +.++.+..+ |+++|||||+|.+.++|.+|++.| +|.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~-~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~~~~~ 84 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRR-FGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLYLCVS 84 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTT-TCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEEEEEC
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHh-cCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEEEecc
Confidence 3688999999999999999999999 99999 778777766 799999999999999999999998 565
Q ss_pred --eeCCeEEEEE
Q 024018 261 --VIMCLVIALS 270 (274)
Q Consensus 261 --~i~g~~i~v~ 270 (274)
.+.++.+.|.
T Consensus 85 ~~~~~~~~~~v~ 96 (114)
T 2dnl_A 85 SPTIKDKPVQIR 96 (114)
T ss_dssp CSSSCSEEEEEE
T ss_pred CCCcCCCeeecc
Confidence 3345666655
No 352
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.60 E-value=3.5e-15 Score=107.57 Aligned_cols=80 Identities=23% Similarity=0.160 Sum_probs=70.0
Q ss_pred CCccceEEecC--Cccc--------cHHHHHHHHhhcCCceEEEEEEEcCCC--CCCccEEEEEEcCHHHHHHHHHHhCC
Q 024018 192 FATFNLFIANL--SFEA--------RAKDLREFFISEGWDVVSAEVIFHDNP--RRSAGYGFVSFKSKKVAETAISAFQG 259 (274)
Q Consensus 192 ~~~~~l~V~nl--p~~~--------~~~~l~~~f~~~~G~v~~~~i~~~~~~--g~~~g~afV~f~~~~~a~~A~~~l~g 259 (274)
.|++.|.|.|+ |..+ .+++|++.|++ ||.|.++.|+++..+ +.++|+|||+|.+.++|.+|++.|||
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k-~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSK-YGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHT-TSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHc-cCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 45788999998 3333 45799999998 999999999888654 36899999999999999999999999
Q ss_pred ceeCCeEEEEEEe
Q 024018 260 KVIMCLVIALSYL 272 (274)
Q Consensus 260 ~~i~g~~i~v~~a 272 (274)
+.++||.|+|+|+
T Consensus 82 ~~f~GR~i~v~~~ 94 (105)
T 3v4m_A 82 RKFANRVVVTKYC 94 (105)
T ss_dssp CEETTEECEEEEE
T ss_pred CEeCCCEEEEEEe
Confidence 9999999999987
No 353
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.60 E-value=2.1e-15 Score=111.68 Aligned_cols=74 Identities=14% Similarity=0.239 Sum_probs=68.0
Q ss_pred CCCccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 024018 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALS 270 (274)
Q Consensus 191 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~ 270 (274)
..+.++|||+|+ .+++++|+++|+. ||.|.++.+. .++|||||+|.+.++|.+|++.|+|..++|+.|+|.
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~-~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~ 106 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSP-FGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 106 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHST-TCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHc-cCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 345789999996 6999999999998 9999999885 568999999999999999999999999999999999
Q ss_pred Eee
Q 024018 271 YLY 273 (274)
Q Consensus 271 ~a~ 273 (274)
||+
T Consensus 107 ~a~ 109 (121)
T 2bz2_A 107 IAR 109 (121)
T ss_dssp ECC
T ss_pred EeC
Confidence 985
No 354
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.59 E-value=1.9e-15 Score=108.82 Aligned_cols=72 Identities=15% Similarity=0.128 Sum_probs=64.1
Q ss_pred EecCCccccHHHHHHHH------------hhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeE
Q 024018 199 IANLSFEARAKDLREFF------------ISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLV 266 (274)
Q Consensus 199 V~nlp~~~~~~~l~~~f------------~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~ 266 (274)
+.||+..+++++|++.| ++ ||.|.++.|+++.. |+++|||||+|.+.++|.+|++.|||+.++||.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~-~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~ 97 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEK-YGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQP 97 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhcc-CCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEE
Confidence 56788888887777666 98 99999999988764 789999999999999999999999999999999
Q ss_pred EEEEEe
Q 024018 267 IALSYL 272 (274)
Q Consensus 267 i~v~~a 272 (274)
|+|.|+
T Consensus 98 i~v~~s 103 (104)
T 1jmt_A 98 IHAELS 103 (104)
T ss_dssp CCEEEC
T ss_pred EEEEEc
Confidence 999986
No 355
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.58 E-value=7.3e-15 Score=124.54 Aligned_cols=79 Identities=20% Similarity=0.271 Sum_probs=72.9
Q ss_pred CCCccceEEecCCccccHHHHH----HHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeE
Q 024018 191 PFATFNLFIANLSFEARAKDLR----EFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLV 266 (274)
Q Consensus 191 ~~~~~~l~V~nlp~~~~~~~l~----~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~ 266 (274)
..+.++|||+|||..+++++|+ ++|+. ||.|.+|.+.+ +|.++|||||+|.+.++|.+|++.|||..+.|+.
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~-~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQ-FGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhc-cCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 3457899999999999999977 89998 99999998875 5789999999999999999999999999999999
Q ss_pred EEEEEee
Q 024018 267 IALSYLY 273 (274)
Q Consensus 267 i~v~~a~ 273 (274)
|+|.|++
T Consensus 82 l~v~~a~ 88 (282)
T 3pgw_A 82 MRIQYAK 88 (282)
T ss_pred EEEEEec
Confidence 9999985
No 356
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.58 E-value=9.1e-15 Score=107.44 Aligned_cols=79 Identities=13% Similarity=0.029 Sum_probs=69.5
Q ss_pred CccceEEecCCc--cc---cHHHHHHHHhhcCCceEEEEEEEcCC----CCCCccEEEEEEcCHHHHHHHHHHhCCceeC
Q 024018 193 ATFNLFIANLSF--EA---RAKDLREFFISEGWDVVSAEVIFHDN----PRRSAGYGFVSFKSKKVAETAISAFQGKVIM 263 (274)
Q Consensus 193 ~~~~l~V~nlp~--~~---~~~~l~~~f~~~~G~v~~~~i~~~~~----~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~ 263 (274)
++++|+|.|+-. .+ .+++|++.|++ ||.|.++.|+++.. +++++|++||+|.+.++|.+|++.|||++++
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k-~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGK-FGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTT-TSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhc-cCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 478899999842 22 46899999998 99999999998854 4567899999999999999999999999999
Q ss_pred CeEEEEEEe
Q 024018 264 CLVIALSYL 272 (274)
Q Consensus 264 g~~i~v~~a 272 (274)
||.|+|.|+
T Consensus 98 GR~i~v~~~ 106 (118)
T 3ue2_A 98 GRKVVAEVY 106 (118)
T ss_dssp TEECEEEEE
T ss_pred CcEEEEEEc
Confidence 999999987
No 357
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.58 E-value=8.8e-16 Score=110.58 Aligned_cols=72 Identities=15% Similarity=0.307 Sum_probs=65.3
Q ss_pred EeCCCCCCCHHHHHHHH------------hccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEE
Q 024018 105 AQNVPWTSTHEDIRALF------------EQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172 (274)
Q Consensus 105 v~nLp~~~t~~~L~~~f------------~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~ 172 (274)
+.||++.+++++|++.| ++||.|.+|.+.++..|+++|||||+|.+.++|.+|++.|||..++||.|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 56777788888777666 999999999999888889999999999999999999999999999999999
Q ss_pred Eeec
Q 024018 173 VNYA 176 (274)
Q Consensus 173 v~~~ 176 (274)
|.++
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9986
No 358
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=2.3e-14 Score=104.67 Aligned_cols=82 Identities=20% Similarity=0.300 Sum_probs=70.3
Q ss_pred cCCCCeEEEeCCCCCCC-----------HHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCe
Q 024018 97 EYSKTRLVAQNVPWTST-----------HEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYE 165 (274)
Q Consensus 97 ~~~~~~l~v~nLp~~~t-----------~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 165 (274)
....++|+|.||....+ +++|+++|++||.|..|.| .++ .++|||||+|.+.++|.+|++.|||..
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~--~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR--HPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT--CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC--CCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 34678899999944332 6899999999999999966 443 379999999999999999999999999
Q ss_pred ecCcEEEEeecccccC
Q 024018 166 FEGRTLKVNYAKIKKK 181 (274)
Q Consensus 166 ~~g~~i~v~~~~~~~~ 181 (274)
++|+.|+|.++.++..
T Consensus 89 ~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 89 FGGRQITAQAWDGTTD 104 (112)
T ss_dssp ETTEECEEEECCSCCC
T ss_pred ECCcEEEEEEeCCCCC
Confidence 9999999999987644
No 359
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.56 E-value=1.1e-14 Score=119.51 Aligned_cols=76 Identities=18% Similarity=0.172 Sum_probs=70.3
Q ss_pred CCCccceEEecCCccc---------cHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCce
Q 024018 191 PFATFNLFIANLSFEA---------RAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKV 261 (274)
Q Consensus 191 ~~~~~~l~V~nlp~~~---------~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~ 261 (274)
....++|||+||+..+ ++++|+++|++ ||.|.+|.|+. ++|||||+|.+.++|..|+++|+|..
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~-fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSR-LGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQT 203 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHT-TSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHc-cCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCE
Confidence 3447899999999998 79999999999 99999999984 48999999999999999999999999
Q ss_pred e------------CCeEEEEEEee
Q 024018 262 I------------MCLVIALSYLY 273 (274)
Q Consensus 262 i------------~g~~i~v~~a~ 273 (274)
| .|+.|.|.||+
T Consensus 204 l~~~~~~e~~~~~~gr~L~V~wA~ 227 (240)
T 3u1l_A 204 LLLPSDKEWDDRREGTGLLVKWAN 227 (240)
T ss_dssp CCCTTSTTGGGGGGSCCCEEEECC
T ss_pred EeccccccccccCCCCEEEEEEcc
Confidence 9 89999999985
No 360
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=2.9e-14 Score=104.11 Aligned_cols=79 Identities=18% Similarity=0.116 Sum_probs=67.6
Q ss_pred CCCCccceEEecCCccc-----------cHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhC
Q 024018 190 KPFATFNLFIANLSFEA-----------RAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ 258 (274)
Q Consensus 190 ~~~~~~~l~V~nlp~~~-----------~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 258 (274)
...++++|+|.||.... .+++|+++|++ ||.|.++.| .+. .++|||||+|.+.++|.+|++.||
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~-~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~ln 85 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSK-FGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLD 85 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGG-TSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHST
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHc-cCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcC
Confidence 34557899999994332 26899999999 999999955 554 379999999999999999999999
Q ss_pred CceeCCeEEEEEEee
Q 024018 259 GKVIMCLVIALSYLY 273 (274)
Q Consensus 259 g~~i~g~~i~v~~a~ 273 (274)
|..++|+.|+|.||.
T Consensus 86 g~~~~gr~l~v~~a~ 100 (112)
T 2dit_A 86 GRWFGGRQITAQAWD 100 (112)
T ss_dssp TCEETTEECEEEECC
T ss_pred CCEECCcEEEEEEeC
Confidence 999999999999974
No 361
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=3e-15 Score=104.45 Aligned_cols=73 Identities=19% Similarity=0.309 Sum_probs=62.3
Q ss_pred CccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 024018 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSYL 272 (274)
Q Consensus 193 ~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a 272 (274)
..++|||+|||..+++++|+++|+. ||.|.++.++.+ ++|||||+|.+.++|.+|+.. +..+.|+.|+|.|+
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQ-YGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNA 75 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTT-TSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHH-cCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEec
Confidence 3689999999999999999999998 999999998754 689999999999999754331 34458999999987
Q ss_pred e
Q 024018 273 Y 273 (274)
Q Consensus 273 ~ 273 (274)
+
T Consensus 76 ~ 76 (88)
T 1wf0_A 76 E 76 (88)
T ss_dssp C
T ss_pred C
Confidence 4
No 362
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.54 E-value=2.5e-14 Score=120.09 Aligned_cols=85 Identities=19% Similarity=0.201 Sum_probs=76.5
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCC-Ceec---CcEEEE
Q 024018 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLES-YEFE---GRTLKV 173 (274)
Q Consensus 98 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~-~~~~---g~~i~v 173 (274)
...++|||+|||+.+|+++|+++|+.||.|..|.++.+.+|.++|||||+|.+.++|.+|+..|++ ..+. |++|.|
T Consensus 94 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 94 THGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred ccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 356789999999999999999999999999999999998899999999999999999999999954 4444 999999
Q ss_pred eecccccCC
Q 024018 174 NYAKIKKKN 182 (274)
Q Consensus 174 ~~~~~~~~~ 182 (274)
.++......
T Consensus 174 ~~~~~~~~~ 182 (261)
T 3sde_A 174 EPMEQFDDE 182 (261)
T ss_dssp EECCCEESS
T ss_pred eeccccCcc
Confidence 999876543
No 363
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.54 E-value=2e-14 Score=103.58 Aligned_cols=81 Identities=23% Similarity=0.291 Sum_probs=70.3
Q ss_pred CCCeEEEeCC--CCCCC--------HHHHHHHHhccCceEEEEEeecCCC---CceeEEEEEECCHHHHHHHHHHcCCCe
Q 024018 99 SKTRLVAQNV--PWTST--------HEDIRALFEQHGTVLDIELSMHSKN---RNRGLAFVTMGSPDEATAALNNLESYE 165 (274)
Q Consensus 99 ~~~~l~v~nL--p~~~t--------~~~L~~~f~~~G~v~~v~~~~~~~~---~~~g~afv~f~~~~~a~~a~~~l~~~~ 165 (274)
+++.|.+.|+ |.... +++|++.|++||.|.+|.|.++..+ .++|+|||+|.+.++|.+|++.|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 5678999998 33332 4799999999999999999887643 679999999999999999999999999
Q ss_pred ecCcEEEEeecccc
Q 024018 166 FEGRTLKVNYAKIK 179 (274)
Q Consensus 166 ~~g~~i~v~~~~~~ 179 (274)
++||.|+|.++...
T Consensus 84 f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 84 FANRVVVTKYCDPD 97 (105)
T ss_dssp ETTEECEEEEECHH
T ss_pred eCCCEEEEEEeCHH
Confidence 99999999998654
No 364
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.53 E-value=1.4e-14 Score=119.21 Aligned_cols=76 Identities=18% Similarity=0.208 Sum_probs=70.9
Q ss_pred CCccceEEecCCc-cccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 024018 192 FATFNLFIANLSF-EARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALS 270 (274)
Q Consensus 192 ~~~~~l~V~nlp~-~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~ 270 (274)
.+.++|||+|||. .+++++|+++|+. ||.|.++.++.+. +|||||+|.+.++|.+|++.|+|..+.|+.|+|.
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~-~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGV-YGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHH-HTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHh-CCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 4478999999999 9999999999999 9999999998764 7899999999999999999999999999999999
Q ss_pred Eee
Q 024018 271 YLY 273 (274)
Q Consensus 271 ~a~ 273 (274)
|++
T Consensus 106 ~a~ 108 (229)
T 2adc_A 106 LSK 108 (229)
T ss_dssp CCS
T ss_pred Eec
Confidence 875
No 365
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.51 E-value=2.7e-14 Score=114.71 Aligned_cols=77 Identities=29% Similarity=0.502 Sum_probs=71.3
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccC-ceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeec-CcEEEEeec
Q 024018 99 SKTRLVAQNVPWTSTHEDIRALFEQHG-TVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFE-GRTLKVNYA 176 (274)
Q Consensus 99 ~~~~l~v~nLp~~~t~~~L~~~f~~~G-~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~-g~~i~v~~~ 176 (274)
..++|||+|||..+++++|+++|+.|| .|..+.+..+. +|+|||+|.+.++|.+|++.|+|..++ |+.|+|.|+
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 194 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFS 194 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEee
Confidence 468899999999999999999999999 99999997642 789999999999999999999999999 999999998
Q ss_pred ccc
Q 024018 177 KIK 179 (274)
Q Consensus 177 ~~~ 179 (274)
+++
T Consensus 195 ~~~ 197 (198)
T 1qm9_A 195 KST 197 (198)
T ss_dssp CCC
T ss_pred ccc
Confidence 753
No 366
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.50 E-value=8e-14 Score=102.37 Aligned_cols=80 Identities=16% Similarity=0.168 Sum_probs=70.4
Q ss_pred CCCeEEEeCCCC-----CCCHHHHHHHHhccCceEEEEEeecCC-----CCceeEEEEEECCHHHHHHHHHHcCCCeecC
Q 024018 99 SKTRLVAQNVPW-----TSTHEDIRALFEQHGTVLDIELSMHSK-----NRNRGLAFVTMGSPDEATAALNNLESYEFEG 168 (274)
Q Consensus 99 ~~~~l~v~nLp~-----~~t~~~L~~~f~~~G~v~~v~~~~~~~-----~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g 168 (274)
.+++|++.|+-. +--+++|++.|++||.|.+|.|+++.. ++++|++||+|.+.++|.+|++.|||..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 678899999832 224799999999999999999998753 4678999999999999999999999999999
Q ss_pred cEEEEeeccc
Q 024018 169 RTLKVNYAKI 178 (274)
Q Consensus 169 ~~i~v~~~~~ 178 (274)
|.|+|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999865
No 367
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=5.2e-13 Score=95.00 Aligned_cols=76 Identities=20% Similarity=0.267 Sum_probs=63.4
Q ss_pred CeEEEeCCC-------CCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEE
Q 024018 101 TRLVAQNVP-------WTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKV 173 (274)
Q Consensus 101 ~~l~v~nLp-------~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v 173 (274)
++|.|.-.. ..+++++|+++|++||.|.+|.|+ ++++|||||+|.+.++|.+|++.+++ +.|++|+|
T Consensus 11 ~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V 84 (100)
T 2d9o_A 11 PKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKI 84 (100)
T ss_dssp CEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEE
T ss_pred ceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEE
Confidence 445555443 468999999999999999999997 36799999999999999999997544 68999999
Q ss_pred eecccccCC
Q 024018 174 NYAKIKKKN 182 (274)
Q Consensus 174 ~~~~~~~~~ 182 (274)
.|+..+...
T Consensus 85 ~~a~~~~~~ 93 (100)
T 2d9o_A 85 SWLEGQPQD 93 (100)
T ss_dssp ECSSCCCCC
T ss_pred EEccCCCCC
Confidence 999876544
No 368
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.44 E-value=3.6e-13 Score=98.21 Aligned_cols=78 Identities=22% Similarity=0.195 Sum_probs=65.8
Q ss_pred CCCccceEEecCCc----------cccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCc
Q 024018 191 PFATFNLFIANLSF----------EARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260 (274)
Q Consensus 191 ~~~~~~l~V~nlp~----------~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~ 260 (274)
..++++|.+.|+=. .-.+++|++.|++ ||.|.++.|.++. ++|+|||+|.+.++|.+|++.|||+
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~k-fG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~ 78 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNK-HGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGR 78 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTT-TTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTC
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhc-cCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCC
Confidence 34578899988732 2235689999998 9999999885442 5899999999999999999999999
Q ss_pred eeCCeEEEEEEee
Q 024018 261 VIMCLVIALSYLY 273 (274)
Q Consensus 261 ~i~g~~i~v~~a~ 273 (274)
+++||.|+|.|+.
T Consensus 79 ~f~GR~i~v~~~~ 91 (114)
T 3s6e_A 79 WFAGKMITAAYVP 91 (114)
T ss_dssp EETTEECEEEEEC
T ss_pred EECCEEEEEEEEc
Confidence 9999999999974
No 369
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.42 E-value=4.4e-13 Score=115.75 Aligned_cols=75 Identities=23% Similarity=0.368 Sum_probs=65.2
Q ss_pred CCCCeEEEeC--CCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeec---Cc--E
Q 024018 98 YSKTRLVAQN--VPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFE---GR--T 170 (274)
Q Consensus 98 ~~~~~l~v~n--Lp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~---g~--~ 170 (274)
...++||||| |+..+|+++|+++|++||.|.+|.+.. .||||||+|.+.++|.+|++.|||..+. |+ .
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ 90 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 90 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceE
Confidence 4567899999 578999999999999999999988754 3899999999999999999999998883 45 6
Q ss_pred EEEeecc
Q 024018 171 LKVNYAK 177 (274)
Q Consensus 171 i~v~~~~ 177 (274)
|.|.+..
T Consensus 91 ly~~~~~ 97 (345)
T 3tht_A 91 LYLNFVE 97 (345)
T ss_dssp CEEEECS
T ss_pred EEEEEee
Confidence 7777774
No 370
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=2.1e-12 Score=91.82 Aligned_cols=62 Identities=19% Similarity=0.179 Sum_probs=55.9
Q ss_pred ccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEee
Q 024018 204 FEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSYLY 273 (274)
Q Consensus 204 ~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a~ 273 (274)
..+++++|+++|++ ||.|.+|.|+ +.++|||||+|++.++|.+|++.+++ +.|+.|+|.||+
T Consensus 27 ~~~te~~L~~~F~~-~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~ 88 (100)
T 2d9o_A 27 GGYSKDVLLRLLQK-YGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLE 88 (100)
T ss_dssp CSCCHHHHHHHHHT-TSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSS
T ss_pred CCCCHHHHHHHHHh-cCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEcc
Confidence 57899999999999 9999999987 46899999999999999999998544 689999999985
No 371
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.38 E-value=9e-13 Score=113.81 Aligned_cols=77 Identities=18% Similarity=0.256 Sum_probs=65.8
Q ss_pred CCCCCccceEEec--CCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeC---
Q 024018 189 PKPFATFNLFIAN--LSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIM--- 263 (274)
Q Consensus 189 ~~~~~~~~l~V~n--lp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~--- 263 (274)
....++.+|||+| |+..+++++|+++|++ ||.|.+|.+. .+||||||+|.+.++|.+|++.|||..+.
T Consensus 13 ~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~-~G~V~~v~~~------~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~ 85 (345)
T 3tht_A 13 TVSYATQSLVVANGGLGNGVSRNQLLPVLEK-CGLVDALLMP------PNKPYSFARYRTTEESKRAYVTLNGKEVVDDL 85 (345)
T ss_dssp CCSSCCSEEEEETCSGGGTCCHHHHHHHHHT-TSCEEEEECC------TTCSEEEEEESSHHHHHHHHHHTTTCEEECTT
T ss_pred ecCCCCCEEEEEcCCCCCCCCHHHHHHHHHh-cCCeEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCcccccc
Confidence 3456689999999 5789999999999999 9999988663 25799999999999999999999999883
Q ss_pred Ce--EEEEEEe
Q 024018 264 CL--VIALSYL 272 (274)
Q Consensus 264 g~--~i~v~~a 272 (274)
|+ .|.++|+
T Consensus 86 g~~~~ly~~~~ 96 (345)
T 3tht_A 86 GQKITLYLNFV 96 (345)
T ss_dssp SCEEECEEEEC
T ss_pred CCceEEEEEEe
Confidence 45 5777775
No 372
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.38 E-value=1.9e-12 Score=94.41 Aligned_cols=78 Identities=23% Similarity=0.327 Sum_probs=65.7
Q ss_pred CCCeEEEeCCCCCC----------CHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecC
Q 024018 99 SKTRLVAQNVPWTS----------THEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEG 168 (274)
Q Consensus 99 ~~~~l~v~nLp~~~----------t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g 168 (274)
.++.|.+.|+=... -+++|++.|++||.|.+|.+.++. .+|+|||+|.+.++|.+|++.|||..++|
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~---~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G 82 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS---AQGNVYVKCPSIAAAIAAVNALHGRWFAG 82 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC---TTCCEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC---CcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 45678888873322 246889999999999999986552 58999999999999999999999999999
Q ss_pred cEEEEeecccc
Q 024018 169 RTLKVNYAKIK 179 (274)
Q Consensus 169 ~~i~v~~~~~~ 179 (274)
|.|+|.++...
T Consensus 83 R~i~v~~~~~~ 93 (114)
T 3s6e_A 83 KMITAAYVPLP 93 (114)
T ss_dssp EECEEEEECHH
T ss_pred EEEEEEEEcHH
Confidence 99999998643
No 373
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.16 E-value=1.3e-10 Score=79.74 Aligned_cols=73 Identities=16% Similarity=0.132 Sum_probs=60.9
Q ss_pred CCCccceEEecCC----ccccH----HHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCcee
Q 024018 191 PFATFNLFIANLS----FEARA----KDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVI 262 (274)
Q Consensus 191 ~~~~~~l~V~nlp----~~~~~----~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i 262 (274)
.++..+|+|...+ ..+-+ .+|.+.|.. ||.|..++++.+. +||+|.+.++|.+|++ |||..+
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~-~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v 73 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFAS-FGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKEL 73 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHT-TCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEE
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHh-CCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEe
Confidence 3456788887766 22322 579999999 9999999998653 8999999999999999 999999
Q ss_pred CCeEEEEEEee
Q 024018 263 MCLVIALSYLY 273 (274)
Q Consensus 263 ~g~~i~v~~a~ 273 (274)
.||.|+|+++.
T Consensus 74 ~Gr~LkV~lkt 84 (91)
T 2dnr_A 74 LNRTITIALKS 84 (91)
T ss_dssp TTEEEEEEECC
T ss_pred CCeEEEEEeCC
Confidence 99999999874
No 374
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.16 E-value=1.3e-10 Score=84.81 Aligned_cols=75 Identities=13% Similarity=0.140 Sum_probs=65.6
Q ss_pred CCCeEEEeCCCCC-CCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECC-HHHHHHHHHHcC--CCeecCcEEEEe
Q 024018 99 SKTRLVAQNVPWT-STHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGS-PDEATAALNNLE--SYEFEGRTLKVN 174 (274)
Q Consensus 99 ~~~~l~v~nLp~~-~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~-~~~a~~a~~~l~--~~~~~g~~i~v~ 174 (274)
....|||+||+.. +++++|+++|+.||.|..|.+.++ ...|||+|.+ .++|.+|++.++ +..|.|..++++
T Consensus 17 ~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g-----~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~e 91 (121)
T 1owx_A 17 IGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRG-----AKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWE 91 (121)
T ss_dssp CCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTT-----CSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEE
T ss_pred CCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecC-----CCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEE
Confidence 5678999999999 999999999999999999999876 3469999999 899999999985 678888887777
Q ss_pred eccc
Q 024018 175 YAKI 178 (274)
Q Consensus 175 ~~~~ 178 (274)
....
T Consensus 92 vL~G 95 (121)
T 1owx_A 92 VLEG 95 (121)
T ss_dssp ECCH
T ss_pred ECCC
Confidence 6553
No 375
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.14 E-value=1.9e-10 Score=78.82 Aligned_cols=74 Identities=18% Similarity=0.184 Sum_probs=62.0
Q ss_pred CCCeEEEeCCCC----CCCH----HHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcE
Q 024018 99 SKTRLVAQNVPW----TSTH----EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRT 170 (274)
Q Consensus 99 ~~~~l~v~nLp~----~~t~----~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~ 170 (274)
...+|+|.-.+. +.-+ .+|.+.|.+||.|..+++..+ .+||+|.+.++|.+|++ |+|..+.||.
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d-------~~fVtF~d~~sAlaAi~-mnG~~v~Gr~ 77 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED-------KMWVTFLEGSSALNVLS-LNGKELLNRT 77 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS-------SEEEEESSHHHHHHGGG-GTTCEETTEE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC-------CEEEEECChHHHHHHHh-cCCeEeCCeE
Confidence 345688876652 3333 778999999999999999865 38999999999999999 9999999999
Q ss_pred EEEeeccccc
Q 024018 171 LKVNYAKIKK 180 (274)
Q Consensus 171 i~v~~~~~~~ 180 (274)
|+|+.+.+.-
T Consensus 78 LkV~lkt~dW 87 (91)
T 2dnr_A 78 ITIALKSPSG 87 (91)
T ss_dssp EEEEECCCSS
T ss_pred EEEEeCCCCc
Confidence 9999988653
No 376
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.13 E-value=9.2e-11 Score=85.66 Aligned_cols=75 Identities=12% Similarity=0.020 Sum_probs=65.6
Q ss_pred CCCCccceEEecCCcc-ccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcC-HHHHHHHHHHhC--CceeCCe
Q 024018 190 KPFATFNLFIANLSFE-ARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKS-KKVAETAISAFQ--GKVIMCL 265 (274)
Q Consensus 190 ~~~~~~~l~V~nlp~~-~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~-~~~a~~A~~~l~--g~~i~g~ 265 (274)
....+..|+|+||+.. +++++|+++|+. ||.|.+|.+..++. .|||+|.+ .++|..|+++|+ |..|.|.
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~-~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~ 86 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSN-HGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNK 86 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCS-SCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSS
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHh-cCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCc
Confidence 3455889999999999 999999999999 99999999987654 49999999 899999999995 7788888
Q ss_pred EEEEEE
Q 024018 266 VIALSY 271 (274)
Q Consensus 266 ~i~v~~ 271 (274)
.++++.
T Consensus 87 ~~~~ev 92 (121)
T 1owx_A 87 EVTWEV 92 (121)
T ss_dssp SEEEEE
T ss_pred EEEEEE
Confidence 777764
No 377
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.09 E-value=2e-10 Score=93.77 Aligned_cols=66 Identities=14% Similarity=0.007 Sum_probs=59.8
Q ss_pred ccHHHHHHHHhhcCCceEEEEEEEcCC----CCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 024018 206 ARAKDLREFFISEGWDVVSAEVIFHDN----PRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSYL 272 (274)
Q Consensus 206 ~~~~~l~~~f~~~~G~v~~~~i~~~~~----~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a 272 (274)
-.+++|++.|++ ||.|.++.|+++.. +++++|++||+|.+.++|.+|+..|||++++||.|.+.|.
T Consensus 141 e~~~dl~~e~~~-~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~ 210 (222)
T 3dxb_A 141 DLEGEVTEECGK-FGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVY 210 (222)
T ss_dssp THHHHHHHHHTT-TSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred HHHHHHHHHHHc-cCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEc
Confidence 356799999998 99999999986643 4589999999999999999999999999999999999985
No 378
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.01 E-value=6.8e-10 Score=90.59 Aligned_cols=67 Identities=15% Similarity=0.172 Sum_probs=60.9
Q ss_pred CCHHHHHHHHhccCceEEEEEeecCC-----CCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEEeeccc
Q 024018 112 STHEDIRALFEQHGTVLDIELSMHSK-----NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178 (274)
Q Consensus 112 ~t~~~L~~~f~~~G~v~~v~~~~~~~-----~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 178 (274)
-.+++|++.|++||.|.++.+.++.. ++++|++||+|.+.++|.+|++.|||..++||.|.+.++..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 45789999999999999999986543 48999999999999999999999999999999999999864
No 379
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.00 E-value=5.6e-10 Score=76.88 Aligned_cols=72 Identities=13% Similarity=0.037 Sum_probs=60.9
Q ss_pred CCCCccceEEecCCcc-----ccH----HHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCc
Q 024018 190 KPFATFNLFIANLSFE-----ARA----KDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260 (274)
Q Consensus 190 ~~~~~~~l~V~nlp~~-----~~~----~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~ 260 (274)
..+|..+|+|..++.. +-+ .+|.+.|.. ||.|..++++.+. +||+|.+.++|.+|++ |+|.
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~-~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~ 80 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGS-YGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGM 80 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHH-HSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGS
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHH-CCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCe
Confidence 4556788999888632 222 579999999 9999999998653 9999999999999999 9999
Q ss_pred eeCCeEEEEEE
Q 024018 261 VIMCLVIALSY 271 (274)
Q Consensus 261 ~i~g~~i~v~~ 271 (274)
.++||.|+|++
T Consensus 81 ~v~Gr~L~V~~ 91 (95)
T 1ufw_A 81 KVKGRAVKISG 91 (95)
T ss_dssp EETTEEEEEEC
T ss_pred eeCCeEEEEec
Confidence 99999999986
No 380
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.91 E-value=2e-09 Score=74.12 Aligned_cols=71 Identities=15% Similarity=0.261 Sum_probs=60.3
Q ss_pred CCCeEEEeCCCCC-----CCH----HHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCc
Q 024018 99 SKTRLVAQNVPWT-----STH----EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGR 169 (274)
Q Consensus 99 ~~~~l~v~nLp~~-----~t~----~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~ 169 (274)
...+|+|.-++.. +-+ .+|.+.|..||.|..+++..++ +||+|.+.++|.+|++ |+|..+.||
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~-------~fVtF~d~~sAl~AI~-ldG~~v~Gr 85 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ-------MLVTFADSHSALSVLD-VDGMKVKGR 85 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE-------EEEECSCSHHHHHHHH-GGGSEETTE
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc-------EEEEEcChHHHHHHHh-cCCeeeCCe
Confidence 4567999887643 222 5688999999999999998762 9999999999999999 999999999
Q ss_pred EEEEeecc
Q 024018 170 TLKVNYAK 177 (274)
Q Consensus 170 ~i~v~~~~ 177 (274)
.|+|++..
T Consensus 86 ~L~V~~k~ 93 (95)
T 1ufw_A 86 AVKISGPS 93 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEeccC
Confidence 99998754
No 381
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.78 E-value=2.9e-08 Score=69.68 Aligned_cols=75 Identities=13% Similarity=0.112 Sum_probs=68.0
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhcc-----CceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEE
Q 024018 97 EYSKTRLVAQNVPWTSTHEDIRALFEQH-----GTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTL 171 (274)
Q Consensus 97 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~-----G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i 171 (274)
....++|-+-|||..++++.|+.+++.+ |.++.|.+..| -+-|+|+|.+...|-+|.-.|+|..|.||+|
T Consensus 18 ~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD-----H~GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 18 KELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD-----FNGAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT-----TTEEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred ccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC-----CCceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 3457889999999999999999999999 99999999888 5679999999999999998899999999999
Q ss_pred EEeec
Q 024018 172 KVNYA 176 (274)
Q Consensus 172 ~v~~~ 176 (274)
++.-.
T Consensus 93 r~gTv 97 (117)
T 2l9w_A 93 RSGTI 97 (117)
T ss_dssp EEECH
T ss_pred EecCH
Confidence 98643
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.76 E-value=5.9e-08 Score=68.15 Aligned_cols=70 Identities=14% Similarity=0.133 Sum_probs=63.9
Q ss_pred ccceEEecCCccccHHHHHHHHhhcC-----CceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEE
Q 024018 194 TFNLFIANLSFEARAKDLREFFISEG-----WDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIA 268 (274)
Q Consensus 194 ~~~l~V~nlp~~~~~~~l~~~f~~~~-----G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~ 268 (274)
.++|-+-|||..+++..|+.+.++ + |.+..+.+..| .+-|+|+|++...|.+|.-+|+|..|+||+|+
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~-~~~i~~g~i~KI~L~pD------H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQE-EIHINEKDIRKILLVSD------FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHH-HTCCCTTTCSEEEEETT------TTEEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhh-hhccCccceeEEEEecC------CCceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 578999999999999999999999 8 99999888755 34599999999999999999999999999999
Q ss_pred EE
Q 024018 269 LS 270 (274)
Q Consensus 269 v~ 270 (274)
+.
T Consensus 94 ~g 95 (117)
T 2l9w_A 94 SG 95 (117)
T ss_dssp EE
T ss_pred ec
Confidence 85
No 383
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.42 E-value=3.2e-06 Score=58.88 Aligned_cols=88 Identities=19% Similarity=0.231 Sum_probs=72.4
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhc-----cCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEE
Q 024018 99 SKTRLVAQNVPWTSTHEDIRALFEQ-----HGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKV 173 (274)
Q Consensus 99 ~~~~l~v~nLp~~~t~~~L~~~f~~-----~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v 173 (274)
...+|.|.|||+.+.++.|.-+|+. =|+|.++.... +-|+|+|.+.+.|++.++. ..+.|.|..|.|
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-------~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV 78 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-------CGGVLTFREPADAERVLAQ-ADHELHGAQLSL 78 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-------CcEEEEEcChHHHHHHhcC-CcceecCeEEEE
Confidence 4678999999999999999999986 25688887752 6799999999999999983 478999999999
Q ss_pred eecccccCCCCCCCCCCCCCccceEEecCCcccc
Q 024018 174 NYAKIKKKNPFPPVQPKPFATFNLFIANLSFEAR 207 (274)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~ 207 (274)
....+.. ..+|++.+|+..++
T Consensus 79 ~P~~~~~-------------~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 79 RPAPPRA-------------PARLLLQGLPPGTS 99 (104)
T ss_dssp EECCCCC-------------CCCCCCCSCCCCCC
T ss_pred EcCCCCC-------------cceEeeecCCCCCC
Confidence 7755442 45688999987764
No 384
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.09 E-value=1.9e-05 Score=55.18 Aligned_cols=76 Identities=17% Similarity=0.180 Sum_probs=64.6
Q ss_pred CCCeEEEeCCCCCC-C----HHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcEEEE
Q 024018 99 SKTRLVAQNVPWTS-T----HEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKV 173 (274)
Q Consensus 99 ~~~~l~v~nLp~~~-t----~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v 173 (274)
-.++|+|.||+..+ . .+.++++|..|+++......+. -+-..|.|.++++|.+|...|++..++|+.++|
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS-----FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS-----FKRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT-----TTEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc-----ceEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 34679999998865 2 2677899999999888887754 446789999999999999999999999999999
Q ss_pred eecccc
Q 024018 174 NYAKIK 179 (274)
Q Consensus 174 ~~~~~~ 179 (274)
-++.+.
T Consensus 79 YFgq~~ 84 (104)
T 1wey_A 79 YFAQTL 84 (104)
T ss_dssp ECCCCS
T ss_pred EecCCC
Confidence 999843
No 385
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.93 E-value=3.2e-05 Score=54.06 Aligned_cols=73 Identities=8% Similarity=-0.015 Sum_probs=60.6
Q ss_pred ccceEEecCCccc-c----HHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEE
Q 024018 194 TFNLFIANLSFEA-R----AKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIA 268 (274)
Q Consensus 194 ~~~l~V~nlp~~~-~----~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~ 268 (274)
.++|+|.||+..+ . .+.++++|.. |+.+......+. -.-..|.|.+.++|.+|-..||+..+.|++|+
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~-~~~~~tF~~lkS------FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRT-YDKDTTFQYFKS------FKRVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHT-TCSSCEEEEETT------TTEEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHh-hCcCcceeecCc------ceEEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 4679999998766 2 3578899998 888877766533 33589999999999999999999999999999
Q ss_pred EEEee
Q 024018 269 LSYLY 273 (274)
Q Consensus 269 v~~a~ 273 (274)
|-|+.
T Consensus 78 ~YFgq 82 (104)
T 1wey_A 78 LYFAQ 82 (104)
T ss_dssp EECCC
T ss_pred EEecC
Confidence 98874
No 386
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.80 E-value=0.00015 Score=49.76 Aligned_cols=68 Identities=13% Similarity=0.213 Sum_probs=56.3
Q ss_pred CeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCC--C-CceeEEEEEECCHHHHHHHHHHcCCCeecC
Q 024018 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--N-RNRGLAFVTMGSPDEATAALNNLESYEFEG 168 (274)
Q Consensus 101 ~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~--~-~~~g~afv~f~~~~~a~~a~~~l~~~~~~g 168 (274)
.+|.|++||+++|++++.+.++....+........+. + ..-.-|||.|.+.+++....+.++|..+.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 4789999999999999999999998877666655442 1 234569999999999999999999988854
No 387
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.65 E-value=0.00052 Score=47.08 Aligned_cols=68 Identities=16% Similarity=0.157 Sum_probs=56.2
Q ss_pred cceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCC--CCccEEEEEEcCHHHHHHHHHHhCCceeC
Q 024018 195 FNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPR--RSAGYGFVSFKSKKVAETAISAFQGKVIM 263 (274)
Q Consensus 195 ~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g--~~~g~afV~f~~~~~a~~A~~~l~g~~i~ 263 (274)
.+|.|++||..++|+++.+.++. .+.+.....+..+.+. ....-|+|.|.+.+++..-.+.++|..+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~-~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQP-MPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCS-CCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcC-cccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 46899999999999999999998 6787777666554322 23457999999999999999999999875
No 388
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.63 E-value=0.00033 Score=48.72 Aligned_cols=68 Identities=16% Similarity=0.161 Sum_probs=56.6
Q ss_pred ccceEEecCCccccHHHHHHHHhh----cCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEE
Q 024018 194 TFNLFIANLSFEARAKDLREFFIS----EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIAL 269 (274)
Q Consensus 194 ~~~l~V~nlp~~~~~~~l~~~f~~----~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v 269 (274)
..+|.|.|||..+.++.|.-+|+. -.|.|.++.... +-|+|+|.+.+.|++.++. ..+.+.|..|.|
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV 78 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQLSL 78 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEE
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEEEE
Confidence 578999999999999999999997 346888876642 4599999999999999984 467778877777
Q ss_pred E
Q 024018 270 S 270 (274)
Q Consensus 270 ~ 270 (274)
.
T Consensus 79 ~ 79 (104)
T 2dhx_A 79 R 79 (104)
T ss_dssp E
T ss_pred E
Confidence 4
No 389
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.47 E-value=0.00059 Score=49.00 Aligned_cols=74 Identities=20% Similarity=0.170 Sum_probs=59.4
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecC-cEEEEee
Q 024018 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEG-RTLKVNY 175 (274)
Q Consensus 97 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g-~~i~v~~ 175 (274)
....+.|.|-+.|+.. ...+...|++||.|.+.... ....+..|.|.+..+|++||. .||..+.| -.|=|.+
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~-----~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS-----NTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKP 93 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC-----SSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEE
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC-----CCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEE
Confidence 3356779999999885 67788899999999988762 125689999999999999999 59999975 5566666
Q ss_pred cc
Q 024018 176 AK 177 (274)
Q Consensus 176 ~~ 177 (274)
..
T Consensus 94 ~~ 95 (119)
T 1wwh_A 94 CI 95 (119)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 390
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.32 E-value=0.0017 Score=46.62 Aligned_cols=70 Identities=13% Similarity=0.170 Sum_probs=56.0
Q ss_pred CccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCC-eEEEEEE
Q 024018 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMC-LVIALSY 271 (274)
Q Consensus 193 ~~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g-~~i~v~~ 271 (274)
....|.|-+.|... ...|.+.|++ ||.|.+... + ...++..|.|.++.+|++||.. ||..++| -.|-|..
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~-~G~Iv~~~~---~---~~~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQ-YGNILKHVM---S---NTGNWMHIRYQSKLQARKALSK-DGRIFGESIMIGVKP 93 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHT-TSCEEEEEE---C---SSSSEEEEEESSHHHHHHHHTT-TTCEETTTEECEEEE
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHh-hCcEEEecc---C---CCCCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEEE
Confidence 35778899999885 5677888888 999998765 1 2357999999999999999995 9999985 5555543
No 391
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.08 E-value=0.0015 Score=45.15 Aligned_cols=69 Identities=14% Similarity=0.183 Sum_probs=49.9
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecC-C-C-CceeEEEEEECCHHHHHHHHHHcCCCeecC
Q 024018 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-K-N-RNRGLAFVTMGSPDEATAALNNLESYEFEG 168 (274)
Q Consensus 100 ~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~-~-~-~~~g~afv~f~~~~~a~~a~~~l~~~~~~g 168 (274)
.-+|.|+.||+.+|++++.+.++.+-++........+ . + ..-..|||.|.+.++.....+.++|..+.+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 3469999999999999988888765444322222111 1 1 123469999999999999999999988854
No 392
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.04 E-value=0.002 Score=44.29 Aligned_cols=55 Identities=18% Similarity=0.220 Sum_probs=43.5
Q ss_pred ccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhC
Q 024018 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ 258 (274)
Q Consensus 194 ~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 258 (274)
.+.++| ++|..+.-.||.++|+. ||.| .|..+.| ..|||.|.+++.|..|+..+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~-fggv-~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSA-FGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTT-TCSC-CCEEEET-------TEEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhc-cCCE-EEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 345556 99999999999999999 8754 3344433 259999999999999999774
No 393
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.83 E-value=0.003 Score=43.41 Aligned_cols=55 Identities=24% Similarity=0.362 Sum_probs=45.4
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHc
Q 024018 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNL 161 (274)
Q Consensus 99 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l 161 (274)
..+.++| ++|+.+...||.++|+.||.| .|+.+. ...|||.|.+++.|..|+..+
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~Wid------DTsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWID------DTSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEE------TTEEEEECSCHHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEc------CCeEEEEecCHHHHHHHHHhc
Confidence 3455666 999999999999999999944 466654 457999999999999999865
No 394
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.81 E-value=0.002 Score=44.46 Aligned_cols=78 Identities=12% Similarity=0.066 Sum_probs=55.1
Q ss_pred ccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCC--CCccEEEEEEcCHHHHHHHHHHhCCceeCC-----eE
Q 024018 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPR--RSAGYGFVSFKSKKVAETAISAFQGKVIMC-----LV 266 (274)
Q Consensus 194 ~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g--~~~g~afV~f~~~~~a~~A~~~l~g~~i~g-----~~ 266 (274)
+-+|.|+.||..+||+++.+.++. .-.+.....+..+.+. ..-.-|+|.|.+.++...-.+..+|..+.+ -+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~-~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRP-LPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSC-CSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCC-cCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 467999999999999999998887 4344333322222111 123459999999999999999999988753 24
Q ss_pred EEEEEe
Q 024018 267 IALSYL 272 (274)
Q Consensus 267 i~v~~a 272 (274)
-.|+||
T Consensus 88 a~VE~A 93 (97)
T 2l08_A 88 AVVEFA 93 (97)
T ss_dssp EEEEEC
T ss_pred eEEEec
Confidence 445555
No 395
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.74 E-value=0.0017 Score=44.75 Aligned_cols=54 Identities=24% Similarity=0.356 Sum_probs=44.8
Q ss_pred CeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcC
Q 024018 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLE 162 (274)
Q Consensus 101 ~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~ 162 (274)
..++| ++|+.+...||.++|+.|| -..|..+. ...|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~Wid------DTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWID------DTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEE------TTEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEc------CCeEEEEecCHHHHHHHHHhcc
Confidence 34566 9999999999999999999 44566654 4579999999999999998653
No 396
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.62 E-value=0.0011 Score=59.27 Aligned_cols=59 Identities=12% Similarity=0.100 Sum_probs=44.9
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHH
Q 024018 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160 (274)
Q Consensus 97 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~ 160 (274)
+...|.|+|. .|..+++.+|.++|++||+|.++.+..+. .-||.|+|.+.+++..++..
T Consensus 50 ~qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~----g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 50 EQAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF----GLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HHHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS----SEEEEEECC---CCHHHHSS
T ss_pred HHhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC----CeEEEEEeCCHHHHHHHHhc
Confidence 4456889998 79999999999999999999999887642 46999999999999988753
No 397
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.46 E-value=0.0034 Score=43.26 Aligned_cols=54 Identities=19% Similarity=0.232 Sum_probs=43.0
Q ss_pred cceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhC
Q 024018 195 FNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ 258 (274)
Q Consensus 195 ~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 258 (274)
+.++| ++|..+.-.||.++|+. ||.| .|..+. + ..|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~-fggv-~I~Wid--D-----TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSA-FGNI-QISWID--D-----TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTT-SEEE-EEEEEE--T-----TEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhc-cCCE-EEEEEc--C-----CeEEEEecCHHHHHHHHHhcc
Confidence 34555 99999999999999999 8843 344443 3 259999999999999999875
No 398
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.33 E-value=0.007 Score=44.06 Aligned_cols=78 Identities=22% Similarity=0.264 Sum_probs=55.8
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHhccCceEE-EEEeecC----------C---C-CceeEEEEEECCHHHHHHHHHHcCCC
Q 024018 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLD-IELSMHS----------K---N-RNRGLAFVTMGSPDEATAALNNLESY 164 (274)
Q Consensus 100 ~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~-v~~~~~~----------~---~-~~~g~afv~f~~~~~a~~a~~~l~~~ 164 (274)
...|.|-+.|+... ..+.+.|++||.|.+ +.+.+.. . + ....+..|+|.+..+|.+||. .||.
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 34588888876654 667789999999765 2221100 0 0 125578999999999999999 5999
Q ss_pred eecCcEEEEeecccc
Q 024018 165 EFEGRTLKVNYAKIK 179 (274)
Q Consensus 165 ~~~g~~i~v~~~~~~ 179 (274)
.+.|..|=|.+....
T Consensus 85 ii~G~mIGV~Py~~~ 99 (132)
T 3p3d_A 85 VFNGVLLGVIPYTKD 99 (132)
T ss_dssp EETTEECEEEECCHH
T ss_pred EeCcEEEEEEECCHH
Confidence 999988778777543
No 399
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.75 E-value=0.011 Score=42.97 Aligned_cols=74 Identities=11% Similarity=0.172 Sum_probs=52.1
Q ss_pred cceEEecCCccccHHHHHHHHhhcCCceEE-EEEEE------------cCCCC-CCccEEEEEEcCHHHHHHHHHHhCCc
Q 024018 195 FNLFIANLSFEARAKDLREFFISEGWDVVS-AEVIF------------HDNPR-RSAGYGFVSFKSKKVAETAISAFQGK 260 (274)
Q Consensus 195 ~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~-~~i~~------------~~~~g-~~~g~afV~f~~~~~a~~A~~~l~g~ 260 (274)
..|.|-+.|.... ..+-+.|++ ||.|.+ +...+ ..-.+ ...++..|.|+++.+|.+||.. ||.
T Consensus 8 ~~VtVFGFp~~~~-~~VI~~Fs~-~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG~ 84 (132)
T 3p3d_A 8 LAILVFGYPETMA-NQVIAYFQE-FGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NGA 84 (132)
T ss_dssp CEEEEECCCGGGH-HHHHHHHGG-GSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TTC
T ss_pred eEEEEEecCHHHH-HHHHHHHHh-hceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CCe
Confidence 4577888876665 556778888 898866 21110 00000 1357889999999999999995 999
Q ss_pred eeCCeEEEEEE
Q 024018 261 VIMCLVIALSY 271 (274)
Q Consensus 261 ~i~g~~i~v~~ 271 (274)
.|.|..|-|..
T Consensus 85 ii~G~mIGV~P 95 (132)
T 3p3d_A 85 VFNGVLLGVIP 95 (132)
T ss_dssp EETTEECEEEE
T ss_pred EeCcEEEEEEE
Confidence 99998777654
No 400
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=93.84 E-value=0.029 Score=50.08 Aligned_cols=56 Identities=9% Similarity=-0.001 Sum_probs=40.5
Q ss_pred ccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHH
Q 024018 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256 (274)
Q Consensus 194 ~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 256 (274)
.+.|+|. .|...++.+|.++|+. ||.|.++..-.+. .-||.|||.+.+++..++..
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~-~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQ-FGPINNHFFYESF-----GLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGG-GSCCCCEEEECSS-----SEEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHh-cCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHhc
Confidence 4679997 7999999999999998 9999988665332 26999999999999877653
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=87.03 E-value=1.4 Score=39.91 Aligned_cols=55 Identities=24% Similarity=0.367 Sum_probs=44.8
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcC
Q 024018 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLE 162 (274)
Q Consensus 100 ~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~ 162 (274)
...++|+ +|..+...+|.+.|+.||.+ +|+.+. ...|||.|.+.+.|..+++.+.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~wid------dt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWID------DTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECS------SSEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEc------CCeEEEEECCHHHHHHHHHHHH
Confidence 3567776 99999999999999999954 455543 4579999999999999998874
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=78.94 E-value=5.9 Score=35.75 Aligned_cols=55 Identities=18% Similarity=0.235 Sum_probs=42.6
Q ss_pred cceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCC
Q 024018 195 FNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259 (274)
Q Consensus 195 ~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g 259 (274)
..++| .+|..+...+|.++|+. ||.| +| .+-+ ...|||.|.+.+.|..++.++..
T Consensus 441 ~vl~v-~f~~~~~~~~i~~~fs~-fg~v-~V--~wid-----dt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 441 HVLHV-TFPKEWKTSDLYQLFSA-FGNI-QI--SWID-----DTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GEEEE-ECCTTCCHHHHHHHGGG-GCCC-EE--EECS-----SSEEEEECSCHHHHHHHHHHHTT
T ss_pred cEEEE-eCCCCCCHHHHHHHHHh-cCCE-EE--EEEc-----CCeEEEEECCHHHHHHHHHHHHh
Confidence 44555 48999999999999998 8854 33 3323 24699999999999999998854
No 403
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=76.78 E-value=8.9 Score=25.50 Aligned_cols=57 Identities=11% Similarity=0.060 Sum_probs=44.1
Q ss_pred eEEecCCccccHHHHHHHHhhcCC-ceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHH
Q 024018 197 LFIANLSFEARAKDLREFFISEGW-DVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256 (274)
Q Consensus 197 l~V~nlp~~~~~~~l~~~f~~~~G-~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 256 (274)
-++-.++...+..+|++.++.+|| .|..++....+. ...-|+|.+....+|......
T Consensus 25 ~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~---~~KKA~V~L~~~~~a~dva~k 82 (86)
T 3j21_T 25 KLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPR---GEKKAYVKLKPEYSASEVAAR 82 (86)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTT---SCEEEEEEECTTSCHHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCC---CceEEEEEcCCCCcHHHHHHh
Confidence 445556789999999999999887 788888876653 345699999988887776554
No 404
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=62.73 E-value=12 Score=24.82 Aligned_cols=56 Identities=9% Similarity=-0.044 Sum_probs=42.0
Q ss_pred eEEecCCccccHHHHHHHHhhcCC-ceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHH
Q 024018 197 LFIANLSFEARAKDLREFFISEGW-DVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255 (274)
Q Consensus 197 l~V~nlp~~~~~~~l~~~f~~~~G-~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~ 255 (274)
-++-.++...+..+|++.++.+|| .|..++....+. ...-|+|.+...++|.....
T Consensus 24 ~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~---~~KKA~VtL~~g~~aid~~~ 80 (85)
T 1vq8_S 24 KLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMD---GEKKAVVRLSEDDDAQEVAS 80 (85)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTT---SSEEEEEEECTTSCHHHHHT
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCC---CceEEEEEECCCCcHHHHHH
Confidence 445567889999999999998887 788888877652 34569999988777655443
No 405
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=61.11 E-value=17 Score=26.56 Aligned_cols=58 Identities=14% Similarity=0.178 Sum_probs=43.7
Q ss_pred ceEEecCCccccHHHHHHHHhhcCC-ceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHH
Q 024018 196 NLFIANLSFEARAKDLREFFISEGW-DVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256 (274)
Q Consensus 196 ~l~V~nlp~~~~~~~l~~~f~~~~G-~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 256 (274)
+-++-.++...+..+|++.++.+|| .|..|..+..+. ...-|+|.+....+|......
T Consensus 80 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~---g~KKAyV~L~~~~daldvAnk 138 (142)
T 3u5e_X 80 NILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPN---GTKKAYVRLTADYDALDIANR 138 (142)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTT---SCEEEEEEECTTCCHHHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCC---CceEEEEEeCCCCcHHHHHHh
Confidence 3455556788999999999998887 788888877653 245699999887777766554
No 406
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=60.58 E-value=34 Score=22.73 Aligned_cols=55 Identities=13% Similarity=0.072 Sum_probs=44.0
Q ss_pred ccceEEecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHh
Q 024018 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAF 257 (274)
Q Consensus 194 ~~~l~V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l 257 (274)
.+-+-+-|+|..+-..++.-...- .|.--+|..+ .|.|.++|.+.++-.-|+.+|
T Consensus 12 nclikiinipqgtlkaevvlavrh-lgyefycdyi--------dgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 12 NCLIKIINIPQGTLKAEVVLAVRH-LGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHT-TCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHH
T ss_pred CcEEEEEecCCCceeeeeEEeehh-cCeeEeeeee--------cCeeEEEecCChHHHHHHHHH
Confidence 455778899999998888777775 6766666554 456999999999999999877
No 407
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=60.17 E-value=19 Score=26.53 Aligned_cols=57 Identities=7% Similarity=0.021 Sum_probs=43.1
Q ss_pred eEEecCCccccHHHHHHHHhhcCC-ceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHH
Q 024018 197 LFIANLSFEARAKDLREFFISEGW-DVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256 (274)
Q Consensus 197 l~V~nlp~~~~~~~l~~~f~~~~G-~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 256 (274)
-++-.++...+..+|++.++.+|| .|..|..+..+. ...-|||.+....+|......
T Consensus 89 ~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~---g~KKAyV~La~~~dAldvAnk 146 (150)
T 4a17_R 89 TMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTIT---GNKKAYIRLAADSDSLTLANK 146 (150)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTT---SCEEEEEEECSSSCHHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCC---CcEEEEEEcCCCCcHHHHHHh
Confidence 445556788899999999998887 788888877653 245699999887777766554
No 408
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=60.00 E-value=21 Score=26.98 Aligned_cols=48 Identities=13% Similarity=0.197 Sum_probs=33.6
Q ss_pred eEEEeCCCC---------CCCHHHHHHHH--hccCceEEEEEeecCCCCceeEEEEEECCH
Q 024018 102 RLVAQNVPW---------TSTHEDIRALF--EQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151 (274)
Q Consensus 102 ~l~v~nLp~---------~~t~~~L~~~f--~~~G~v~~v~~~~~~~~~~~g~afv~f~~~ 151 (274)
++.|-|+|. .....+|++.| ..|.++. ++-...+.| +.|+|.|.|..-
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~G-h~g~aIv~F~~d 72 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYLG-HSGTAIVEFNKD 72 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSSB-EEEEEEEECCSS
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCCC-CceeEEEEecCC
Confidence 355667765 13458999977 8998866 444455555 588999999754
No 409
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=58.74 E-value=4.7 Score=25.81 Aligned_cols=60 Identities=8% Similarity=0.088 Sum_probs=36.2
Q ss_pred cccHHHHHHHHhhcCC----ceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEee
Q 024018 205 EARAKDLREFFISEGW----DVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKVIMCLVIALSYLY 273 (274)
Q Consensus 205 ~~~~~~l~~~f~~~~G----~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a~ 273 (274)
.+...+|..++....| .|-.+.+. ..|.||+-... .|..++..|++..+.|+.++|+.++
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~--------d~~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIM--------DNASYVEILNG-KGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEEC--------SSCEEEEECTT-CHHHHHHHHTTCCC---CCCEEECC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEe--------CCcEEEEECHH-HHHHHHHHhccccCcCceEEEEECC
Confidence 3444555555554233 34445442 34788888764 5777999999999999999998764
No 410
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=56.58 E-value=41 Score=22.36 Aligned_cols=56 Identities=16% Similarity=0.252 Sum_probs=46.2
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHc
Q 024018 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNL 161 (274)
Q Consensus 99 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l 161 (274)
..+-|-|-|+|..+-..++.-.....|---.+..+ .|.|.+.|.+.++-+.|+..|
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyi-------dgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI-------DGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC-------SSCEEEEESSHHHHHHHHHHH
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee-------cCeeEEEecCChHHHHHHHHH
Confidence 44667889999999999998888888865566554 678999999999999999765
No 411
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=52.80 E-value=26 Score=26.05 Aligned_cols=57 Identities=9% Similarity=0.091 Sum_probs=42.8
Q ss_pred eEEecCCccccHHHHHHHHhhcCC-ceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHH
Q 024018 197 LFIANLSFEARAKDLREFFISEGW-DVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256 (274)
Q Consensus 197 l~V~nlp~~~~~~~l~~~f~~~~G-~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 256 (274)
-|+-.++...+..+|++.++.+|| .|..|+.+..+. ...-|+|.+....+|......
T Consensus 95 ~yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~---~~KKAiVtL~~g~~aid~~~k 152 (156)
T 2zkr_s 95 TLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPD---GEKKAYVRLAPDYDALDVANK 152 (156)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECSS---SCEEEEEEECTTSCHHHHHHH
T ss_pred cEEEEEECCCCHHHHHHHHHHHhCCcceEEEeeEcCC---CceEEEEEECCCCcHHHHHHh
Confidence 455567888999999999998887 788888776653 245699999887776655543
No 412
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=52.21 E-value=17 Score=26.83 Aligned_cols=57 Identities=7% Similarity=0.057 Sum_probs=42.4
Q ss_pred eEEecCCccccHHHHHHHHhhcCC-ceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHH
Q 024018 197 LFIANLSFEARAKDLREFFISEGW-DVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256 (274)
Q Consensus 197 l~V~nlp~~~~~~~l~~~f~~~~G-~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 256 (274)
-|+-.++...+..+|++.++.+|| .|..|+.+..+. ...-|+|.+....+|.+....
T Consensus 91 ~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~---g~KKAyV~L~~~~daldvAnk 148 (152)
T 3iz5_X 91 TLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPD---GKKKAYVKLTPDYDALDVANK 148 (152)
T ss_dssp EEEEEECSSCCSHHHHHHHHHHHTCCEEEEEEEECTT---SSEEEEEEECTTSCHHHHHGG
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCcceEEEeeEcCC---CceEEEEEcCCCCcHHHHHHh
Confidence 445556778888999999988777 788888876653 345699999988777765543
No 413
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=43.08 E-value=69 Score=21.10 Aligned_cols=54 Identities=17% Similarity=0.214 Sum_probs=39.9
Q ss_pred EEEeCCCCCCCHHHHHHHHhc-cCc-eEEEEEeecCCCCceeEEEEEECCHHHHHHHH
Q 024018 103 LVAQNVPWTSTHEDIRALFEQ-HGT-VLDIELSMHSKNRNRGLAFVTMGSPDEATAAL 158 (274)
Q Consensus 103 l~v~nLp~~~t~~~L~~~f~~-~G~-v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~ 158 (274)
.|+-.+....+..+|++.++. ||. |..|.....+.| ..-|||.+..-.+|....
T Consensus 25 ~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~--~KKA~V~L~~~~~a~dva 80 (86)
T 3j21_T 25 KLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRG--EKKAYVKLKPEYSASEVA 80 (86)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTS--CEEEEEEECTTSCHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCC--ceEEEEEcCCCCcHHHHH
Confidence 556668899999999999986 675 778877665444 335999998777766543
No 414
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=32.76 E-value=45 Score=31.02 Aligned_cols=56 Identities=16% Similarity=0.243 Sum_probs=42.9
Q ss_pred eCCCCCCCHHHHHHHHh----ccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHc
Q 024018 106 QNVPWTSTHEDIRALFE----QHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNL 161 (274)
Q Consensus 106 ~nLp~~~t~~~L~~~f~----~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l 161 (274)
+..+.+.+--||..+|- .+|.|..+.+...+......++++.|.+.++|.+++..+
T Consensus 349 ~~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i 408 (658)
T 4bby_A 349 CQGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREI 408 (658)
T ss_dssp CCCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHH
T ss_pred ccccccCCCcCHHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhhHHHH
Confidence 34555566668888883 578899998876665566778999999999999888755
No 415
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=32.30 E-value=22 Score=22.86 Aligned_cols=20 Identities=10% Similarity=0.112 Sum_probs=13.6
Q ss_pred CCceEEEEEEEcCCCCCCccEEEEEEcC
Q 024018 219 GWDVVSAEVIFHDNPRRSAGYGFVSFKS 246 (274)
Q Consensus 219 ~G~v~~~~i~~~~~~g~~~g~afV~f~~ 246 (274)
.|.|.+|. ..++.|+|.|++
T Consensus 44 LGTI~kV~--------~~~e~ClV~F~D 63 (79)
T 2m0o_A 44 LGTIKKVD--------SAREVCLVQFED 63 (79)
T ss_dssp EEEEEEEE--------TTTTEEEEEETT
T ss_pred eEEEEEec--------cCCCEEEEEEcC
Confidence 46776652 246679999987
No 416
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.47 E-value=24 Score=21.99 Aligned_cols=20 Identities=10% Similarity=0.112 Sum_probs=13.6
Q ss_pred CCceEEEEEEEcCCCCCCccEEEEEEcC
Q 024018 219 GWDVVSAEVIFHDNPRRSAGYGFVSFKS 246 (274)
Q Consensus 219 ~G~v~~~~i~~~~~~g~~~g~afV~f~~ 246 (274)
.|+|.+|. ..++.|+|.|++
T Consensus 27 lGtV~kV~--------~~~~~ClV~FeD 46 (68)
T 2e5p_A 27 LGTIKKVD--------SAREVCLVQFED 46 (68)
T ss_dssp EEEEEEEE--------TTTTEEEEEETT
T ss_pred EeEEEEEe--------cCCcEEEEEEcc
Confidence 46666553 236789999987
No 417
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=27.07 E-value=57 Score=23.55 Aligned_cols=48 Identities=23% Similarity=0.276 Sum_probs=29.4
Q ss_pred ccccHHHHHHHHhhcCCceEEEEEEE----cCCCCCCccEEEEEEcCHHHHHH
Q 024018 204 FEARAKDLREFFISEGWDVVSAEVIF----HDNPRRSAGYGFVSFKSKKVAET 252 (274)
Q Consensus 204 ~~~~~~~l~~~f~~~~G~v~~~~i~~----~~~~g~~~g~afV~f~~~~~a~~ 252 (274)
...+..+|++-+...|+.-.++.++. .-..|.+.|||.| |++.+.|.+
T Consensus 33 aTpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~I-Yds~d~akk 84 (135)
T 3u5c_Y 33 ANVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLV-YNSVAEAKK 84 (135)
T ss_dssp CCCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEEE-eCCHHHHHh
Confidence 35778899999988787432322222 2233456666655 777777654
No 418
>3lo3_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.38A {Colwellia psychrerythraea} SCOP: d.58.4.0
Probab=25.53 E-value=1.5e+02 Score=19.56 Aligned_cols=45 Identities=9% Similarity=0.003 Sum_probs=27.0
Q ss_pred HHHHHHhhcCCceEEEEEEEcCCCCC--CccEEEEEEcCHHHHHHHHH
Q 024018 210 DLREFFISEGWDVVSAEVIFHDNPRR--SAGYGFVSFKSKKVAETAIS 255 (274)
Q Consensus 210 ~l~~~f~~~~G~v~~~~i~~~~~~g~--~~g~afV~f~~~~~a~~A~~ 255 (274)
.....++++.|.+.--. ...-..|. ......|+|.+.++|.....
T Consensus 25 ~~~~~l~~~GG~~l~rg-~~~~lEG~~~~~~~viieFps~~aa~a~y~ 71 (94)
T 3lo3_A 25 RVASTLAKYSGEVLVKG-SVEQLHGKFEHKAQVILEFPSREDAYNWYH 71 (94)
T ss_dssp HHHHHHHTTTCEEEEEE-ECEEEESCCCCSEEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHcCCEEEEEc-ccccccCCCCCCeEEEEECCCHHHHHHHHC
Confidence 44566777445554332 21111132 45678999999999988764
No 419
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=25.19 E-value=61 Score=22.03 Aligned_cols=54 Identities=9% Similarity=0.065 Sum_probs=41.1
Q ss_pred EecCCccccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHHhCCc
Q 024018 199 IANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260 (274)
Q Consensus 199 V~nlp~~~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~ 260 (274)
|-.++..+.-++|..-....||.-.++... +. -..|-..+.+|..+|++.|+-.
T Consensus 21 Ii~f~RPv~f~eL~~Kv~~~fGq~ldL~y~-n~-------EllIpl~sQeDLDkaIellDrs 74 (103)
T 2cu1_A 21 ILQFPRPVKLEDLRSKAKIAFGQSMDLHYT-NN-------ELVIPLTTQDDLDKAVELLDRS 74 (103)
T ss_dssp EEEEESSCCHHHHHHHHHHHHSSCEEEEEC-SS-------SSCEECCSHHHHHHHHHHHHHC
T ss_pred EEeccCCccHHHHHHHHHHHhCCeeeEEEe-cc-------eEEEeccCHHHHHHHHHHHccC
Confidence 335678888888888888778987766554 22 2678999999999999987643
No 420
>3bbo_V Ribosomal protein L23; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=24.36 E-value=18 Score=27.73 Aligned_cols=57 Identities=11% Similarity=0.092 Sum_probs=42.2
Q ss_pred eEEecCCccccHHHHHHHHhhcCC-ceEEEEEEEcCCCCCCccEEEEEEcCHHHHHHHHHH
Q 024018 197 LFIANLSFEARAKDLREFFISEGW-DVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256 (274)
Q Consensus 197 l~V~nlp~~~~~~~l~~~f~~~~G-~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 256 (274)
-|+-.++...+..+|++.++.+|| .|..|..+..+. ...-|+|......+|......
T Consensus 133 kyvF~Vd~kANK~QIKqAVEkLFdVKV~kVNTln~~g---g~KKAyVtLaeG~~AID~anK 190 (198)
T 3bbo_V 133 SLLFTVDVRADKKMIREAISNFFGVKVRKVNTLIRPD---GTKKAYIMLNKEYNASELAKK 190 (198)
T ss_dssp EECCEECTTCCHHHHHHTTTTTSCCCEEECCCEEETT---TEEECCEEECTTTCTTTHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceeEEEeeEcCC---CeEEEEEEeCCCCchHHHHHh
Confidence 455567889999999999999887 677777665543 245699999887776555554
No 421
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=23.83 E-value=1.5e+02 Score=21.91 Aligned_cols=35 Identities=17% Similarity=0.253 Sum_probs=27.4
Q ss_pred CCHHHHHHHHhccCce---EEEEEeecC-CCCceeEEEE
Q 024018 112 STHEDIRALFEQHGTV---LDIELSMHS-KNRNRGLAFV 146 (274)
Q Consensus 112 ~t~~~L~~~f~~~G~v---~~v~~~~~~-~~~~~g~afv 146 (274)
.++++|+++-...|.+ +++.+..+. +|+.+.+||-
T Consensus 3 ~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv~ 41 (157)
T 3mfb_A 3 LTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGYH 41 (157)
T ss_dssp CCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEEE
T ss_pred cCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEEE
Confidence 5889999999999985 456666664 7888888875
No 422
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=23.35 E-value=11 Score=27.90 Aligned_cols=28 Identities=21% Similarity=0.266 Sum_probs=15.5
Q ss_pred HHHHHHHhccCceEEEEEeecCCCCceeEEEEEEC
Q 024018 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMG 149 (274)
Q Consensus 115 ~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~ 149 (274)
+|+.++|...|.|.-. .. .+||+||+-.
T Consensus 2 ~~~~~l~~~~G~Vkwf---n~----~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWF---NV----RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEE---ET----TTTEEEEEEE
T ss_pred CcccccccceeEEEEE---EC----CCCeeEEeeC
Confidence 3445566666655543 22 3899999876
No 423
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=22.99 E-value=77 Score=25.70 Aligned_cols=31 Identities=16% Similarity=0.354 Sum_probs=24.8
Q ss_pred CeEEEeCCCCCCCHHHHHHHHhccCceEEEEE
Q 024018 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIEL 132 (274)
Q Consensus 101 ~~l~v~nLp~~~t~~~L~~~f~~~G~v~~v~~ 132 (274)
..+.|+|||+.++..-|..++.. +.+....+
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~l 141 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVF 141 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEE
Confidence 45789999999999999999987 55554433
No 424
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.72 E-value=23 Score=21.70 Aligned_cols=11 Identities=27% Similarity=0.380 Sum_probs=8.9
Q ss_pred CccEEEEEEcC
Q 024018 236 SAGYGFVSFKS 246 (274)
Q Consensus 236 ~~g~afV~f~~ 246 (274)
.++.|+|.|++
T Consensus 34 ~~~~ClV~FeD 44 (63)
T 2e5q_A 34 SKQSCLVTFED 44 (63)
T ss_dssp TTSEEEEEETT
T ss_pred CCCEEEEEEcc
Confidence 46789999987
No 425
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=22.68 E-value=41 Score=21.00 Aligned_cols=11 Identities=18% Similarity=0.292 Sum_probs=9.0
Q ss_pred CccEEEEEEcC
Q 024018 236 SAGYGFVSFKS 246 (274)
Q Consensus 236 ~~g~afV~f~~ 246 (274)
.+|.|+|.|++
T Consensus 40 ~~gtC~V~F~D 50 (66)
T 2eqj_A 40 LKQSCFIIFED 50 (66)
T ss_dssp TTTEEEEEETT
T ss_pred CCcEEEEEEcc
Confidence 36789999987
No 426
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=22.47 E-value=89 Score=27.12 Aligned_cols=59 Identities=19% Similarity=0.360 Sum_probs=40.8
Q ss_pred EEEeCCCCCC----CHHHHHHHHhccCceEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCCCeecCcE
Q 024018 103 LVAQNVPWTS----THEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRT 170 (274)
Q Consensus 103 l~v~nLp~~~----t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~ 170 (274)
-+|||+..-. -...+.++.++||+|..+.+ .+.-+|...+.+.+..++.. ++..+.+|+
T Consensus 17 PliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~--------g~~~~vvv~~p~~~k~il~~-~~~~f~~rp 79 (494)
T 3swz_A 17 PLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRM--------GTKTTVIVGHHQLAKEVLIK-KGKDFSGRP 79 (494)
T ss_dssp CEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEE--------TTEEEEEECSHHHHHHHHTT-TTTTTBBCC
T ss_pred CeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEe--------CCCCEEEECCHHHHHHHHHh-CcHhhCCCC
Confidence 3578876432 13567778889999988877 33456778899999998864 555555554
No 427
>2od0_A Hypothetical protein VP1028; structural genomics, unknown functi 2, protein structure initiative, midwest center for structu genomics; 1.95A {Vibrio parahaemolyticus} SCOP: d.198.5.2
Probab=22.17 E-value=71 Score=21.59 Aligned_cols=28 Identities=25% Similarity=0.370 Sum_probs=22.0
Q ss_pred CCHHHHHHHHhccCceEEEEEeecCCCCceeEEEE
Q 024018 112 STHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFV 146 (274)
Q Consensus 112 ~t~~~L~~~f~~~G~v~~v~~~~~~~~~~~g~afv 146 (274)
.+++.|++.|+..|.|..-++. .|+||-
T Consensus 4 ~~~~~i~e~l~~lg~i~~r~MF-------Gg~~l~ 31 (105)
T 2od0_A 4 PILKDSMKLFEALGTIKSRSMF-------GGFGLF 31 (105)
T ss_dssp THHHHHHHHHGGGSCCEEEEET-------TEEEEE
T ss_pred hHHHHHHHHHhccCCceEeecc-------CcEEEE
Confidence 3567799999999999988775 666663
No 428
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=21.05 E-value=75 Score=21.03 Aligned_cols=33 Identities=15% Similarity=0.231 Sum_probs=25.1
Q ss_pred eEEEEEeecCCCCceeEEEEEECCHHHHHHHHHHcCC
Q 024018 127 VLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLES 163 (274)
Q Consensus 127 v~~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~ 163 (274)
|..+.+.. ...||-||++...++...+++...|
T Consensus 40 i~~v~vP~----~fPGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 40 VYSILASE----SLKGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp EEEEEECT----TSTTEEEEEESSHHHHHHHHTTCTT
T ss_pred EEEEEEec----ccCCEEEEEEecchhHHHHHHCCCC
Confidence 55665542 3699999999999999999876544
No 429
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=26.31 E-value=21 Score=24.69 Aligned_cols=51 Identities=18% Similarity=0.162 Sum_probs=30.1
Q ss_pred ccHHHHHHHHhhcCCceEEEEEEEcCCCCCCccEEEE--EEcCHHHHHHHHHHhCC
Q 024018 206 ARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFV--SFKSKKVAETAISAFQG 259 (274)
Q Consensus 206 ~~~~~l~~~f~~~~G~v~~~~i~~~~~~g~~~g~afV--~f~~~~~a~~A~~~l~g 259 (274)
..++++..+..+ .+ +..+.+......|. ..|..+ .|.+.++|.+|+..|-.
T Consensus 34 ~~~~~l~~f~~~-~~-l~~~~v~~t~rnGk-~WyvVlyG~Y~s~~~A~~A~~~LP~ 86 (106)
T 2lfv_A 34 SNYDNLNGWAKK-EN-LKNYVVYETTRNGQ-PWYVLVSGVYASKEEAKKAVSTLPA 86 (106)
Confidence 345566677666 44 33344443322222 234333 78999999999998864
No 430
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=20.42 E-value=50 Score=19.98 Aligned_cols=11 Identities=18% Similarity=0.332 Sum_probs=8.5
Q ss_pred CccEEEEEEcC
Q 024018 236 SAGYGFVSFKS 246 (274)
Q Consensus 236 ~~g~afV~f~~ 246 (274)
.++.++|.|++
T Consensus 30 ~~~~clV~F~D 40 (58)
T 4hcz_A 30 AREVCLVQFED 40 (58)
T ss_dssp TTTEEEEEETT
T ss_pred CCCEEEEEEcC
Confidence 35579999987
Done!