BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>024019
MAIRGVDFKWYDGFFLSMLATSVIIVAINWKRYHLCTYPLHIWIVVDYTTVFVFRLLMFV
DNGLASGMGLDLGWQQRYARFCGRVVVLSILSLLLYPFLWAWTIIGTLWFTSARDCLPEE
GQKWGFLIWLLFSYCGLLCIACMSMGKWLTRRQAHSIRAQQGIPVSEYGVLLDMIRVPEW
AFEAAGQEMRGIGQDTAAYHPGLYLTAAQREAVEALIQELPKFRLKAVPTDCSECPICLE
EFHVGNEVKISFLSIFYSSCSVSDFTYLRCGIEH

High Scoring Gene Products

Symbol, full name Information P value
SIS3
AT3G47990
protein from Arabidopsis thaliana 8.7e-111
PF10_0276
hypothetical protein
gene from Plasmodium falciparum 2.5e-10
PF10_0276
Zinc finger, C3HC4 type, putative
protein from Plasmodium falciparum 3D7 2.5e-10

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  024019
        (274 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2097830 - symbol:SIS3 "SUGAR-INSENSITIVE 3" sp...  1094  8.7e-111  1
GENEDB_PFALCIPARUM|PF10_0276 - symbol:PF10_0276 "hypothet...   136  2.5e-10   2
UNIPROTKB|Q8IJC2 - symbol:PF10_0276 "Zinc finger, C3HC4 t...   136  2.5e-10   2


>TAIR|locus:2097830 [details] [associations]
            symbol:SIS3 "SUGAR-INSENSITIVE 3" species:3702
            "Arabidopsis thaliana" [GO:0008270 "zinc ion binding"
            evidence=IEA;ISS] [GO:0004842 "ubiquitin-protein ligase activity"
            evidence=IDA] [GO:0010182 "sugar mediated signaling pathway"
            evidence=IMP] [GO:0016567 "protein ubiquitination" evidence=IDA]
            [GO:0009644 "response to high light intensity" evidence=RCA]
            [GO:0010413 "glucuronoxylan metabolic process" evidence=RCA]
            [GO:0042542 "response to hydrogen peroxide" evidence=RCA]
            [GO:0045492 "xylan biosynthetic process" evidence=RCA]
            InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089 SMART:SM00184
            UniPathway:UPA00143 Prosite:PS00518 GO:GO:0016021 EMBL:CP002686
            GenomeReviews:BA000014_GR GO:GO:0046872 GO:GO:0008270 GO:GO:0010182
            Gene3D:3.30.40.10 InterPro:IPR013083 HSSP:Q9LRB7 GO:GO:0004842
            EMBL:AL049658 EMBL:AK117391 IPI:IPI00536247 PIR:T06684
            RefSeq:NP_190382.2 UniGene:At.21725 ProteinModelPortal:Q8GYT9
            SMR:Q8GYT9 STRING:Q8GYT9 PaxDb:Q8GYT9 PRIDE:Q8GYT9
            EnsemblPlants:AT3G47990.1 GeneID:823954 KEGG:ath:AT3G47990
            TAIR:At3g47990 eggNOG:NOG317826 HOGENOM:HOG000077621
            InParanoid:Q8GYT9 KO:K16284 OMA:INWKRYR PhylomeDB:Q8GYT9
            ProtClustDB:CLSN2680356 Genevestigator:Q8GYT9 Uniprot:Q8GYT9
        Length = 358

 Score = 1094 (390.2 bits), Expect = 8.7e-111, P = 8.7e-111
 Identities = 194/249 (77%), Positives = 214/249 (85%)

Query:     1 MAIRGVDFKWYDGFFLSMLATSVIIVAINWKRYHLCTYPLHIWIVVDYTTVFVFRLLMFV 60
             MA+RGVDFKWYDGFFLSMLATSVIIVA+NW RY  C YPLHIWIVVDYTTVF+FR+ MFV
Sbjct:     1 MAMRGVDFKWYDGFFLSMLATSVIIVAVNWNRYRACEYPLHIWIVVDYTTVFIFRVFMFV 60

Query:    61 DNGLASGMGLDLGWQQRYARFCGRXXXXXXXXXXXYPFLWAWTIIGTLWFTSARDCLPEE 120
             DNGLASG+GLD G QQR A FCGR           YPFLWAWT+IGT WFT ++ CLPEE
Sbjct:    61 DNGLASGLGLDFGSQQRNAMFCGRVVVLSVLSLLLYPFLWAWTVIGTQWFTKSKTCLPEE 120

Query:   121 GQKWGFLIWLLFSYCGLLCIACMSMGKWLTRRQAHSIRAQQGIPVSEYGVLLDMIRVPEW 180
             GQKWGFLIWL+FSYCGLLCIA + +GKWLTRRQ H +RAQQGIP+SE+G+L+DMIRVP+W
Sbjct:   121 GQKWGFLIWLMFSYCGLLCIAFICVGKWLTRRQVHLLRAQQGIPISEFGILVDMIRVPDW 180

Query:   181 AFEAAGQEMRGIGQDTAAYHPGLYLTAAQREAVEALIQELPKFRLKAVPTDCSECPICLE 240
             AFEAAGQEMRGI QD A YHPGLYLT AQ EAVEALIQELPKFRLKAVP DC EC ICLE
Sbjct:   181 AFEAAGQEMRGISQDAATYHPGLYLTPAQTEAVEALIQELPKFRLKAVPDDCGECLICLE 240

Query:   241 EFHVGNEVK 249
             EFH+G+EV+
Sbjct:   241 EFHIGHEVR 249


>GENEDB_PFALCIPARUM|PF10_0276 [details] [associations]
            symbol:PF10_0276 "hypothetical protein"
            species:5833 "Plasmodium falciparum" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR001841 Pfam:PF13639
            PROSITE:PS50089 SMART:SM00184 GO:GO:0046872 GO:GO:0008270
            Gene3D:3.30.40.10 InterPro:IPR013083 EMBL:AE014185 HSSP:P28990
            RefSeq:XP_001347560.1 ProteinModelPortal:Q8IJC2
            EnsemblProtists:PF10_0276:mRNA GeneID:810433 KEGG:pfa:PF10_0276
            EuPathDB:PlasmoDB:PF3D7_1028200 HOGENOM:HOG000284583 OMA:LENDEVM
            ProtClustDB:CLSZ2429151 Uniprot:Q8IJC2
        Length = 274

 Score = 136 (52.9 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
 Identities = 31/121 (25%), Positives = 52/121 (42%)

Query:    22 SVIIVAINWKRYHLCTYPLHIWIVVDYTTVFVFRLLMFVDNGLASGMGLDLGWQQRYARF 81
             SV  + + W  +  C  P+ +W+VV + ++ ++RL  F    LA  +  D      Y R 
Sbjct:    28 SVGDIFVQWNEFSKCYKPIQLWLVVSFISIVLYRLSHF----LAQYLSNDNDDFIIYRRN 83

Query:    82 CGRXXXXXXXXXXXYPFLWAWTIIGTLWFTS----ARDCLPEEGQKWGFLIWLLFSYCGL 137
                           +PF + W IIGT+W         +CLP     W  ++W++  Y  +
Sbjct:    84 NPPYYISFLVLFILFPFFFIWNIIGTIWIYQIIKYTPNCLPRNNHPWFIVLWIVLCYIWI 143

Query:   138 L 138
             L
Sbjct:   144 L 144

 Score = 66 (28.3 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
 Identities = 15/46 (32%), Positives = 25/46 (54%)

Query:   217 IQELPKFRLKAVPTDCSECPICLEEFHVGNEVKISFLS--IFYSSC 260
             I+ LP + +K +  + S+C ICL +F +   V+   L    F+ SC
Sbjct:   203 IENLPFYYIKNISNE-SKCSICLNDFQIDECVRTLLLCNHTFHKSC 247


>UNIPROTKB|Q8IJC2 [details] [associations]
            symbol:PF10_0276 "Zinc finger, C3HC4 type, putative"
            species:36329 "Plasmodium falciparum 3D7" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR001841 Pfam:PF13639
            PROSITE:PS50089 SMART:SM00184 GO:GO:0046872 GO:GO:0008270
            Gene3D:3.30.40.10 InterPro:IPR013083 EMBL:AE014185 HSSP:P28990
            RefSeq:XP_001347560.1 ProteinModelPortal:Q8IJC2
            EnsemblProtists:PF10_0276:mRNA GeneID:810433 KEGG:pfa:PF10_0276
            EuPathDB:PlasmoDB:PF3D7_1028200 HOGENOM:HOG000284583 OMA:LENDEVM
            ProtClustDB:CLSZ2429151 Uniprot:Q8IJC2
        Length = 274

 Score = 136 (52.9 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
 Identities = 31/121 (25%), Positives = 52/121 (42%)

Query:    22 SVIIVAINWKRYHLCTYPLHIWIVVDYTTVFVFRLLMFVDNGLASGMGLDLGWQQRYARF 81
             SV  + + W  +  C  P+ +W+VV + ++ ++RL  F    LA  +  D      Y R 
Sbjct:    28 SVGDIFVQWNEFSKCYKPIQLWLVVSFISIVLYRLSHF----LAQYLSNDNDDFIIYRRN 83

Query:    82 CGRXXXXXXXXXXXYPFLWAWTIIGTLWFTS----ARDCLPEEGQKWGFLIWLLFSYCGL 137
                           +PF + W IIGT+W         +CLP     W  ++W++  Y  +
Sbjct:    84 NPPYYISFLVLFILFPFFFIWNIIGTIWIYQIIKYTPNCLPRNNHPWFIVLWIVLCYIWI 143

Query:   138 L 138
             L
Sbjct:   144 L 144

 Score = 66 (28.3 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
 Identities = 15/46 (32%), Positives = 25/46 (54%)

Query:   217 IQELPKFRLKAVPTDCSECPICLEEFHVGNEVKISFLS--IFYSSC 260
             I+ LP + +K +  + S+C ICL +F +   V+   L    F+ SC
Sbjct:   203 IENLPFYYIKNISNE-SKCSICLNDFQIDECVRTLLLCNHTFHKSC 247


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.329   0.142   0.488    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      274       263   0.00091  114 3  11 22  0.36    33
                                                     32  0.49    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  621 (66 KB)
  Total size of DFA:  243 KB (2128 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.11u 0.15s 19.26t   Elapsed:  00:00:01
  Total cpu time:  19.11u 0.15s 19.26t   Elapsed:  00:00:01
  Start:  Sat May 11 07:19:07 2013   End:  Sat May 11 07:19:08 2013

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