BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024019
(274 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8GYT9|SIS3_ARATH E3 ubiquitin-protein ligase SIS3 OS=Arabidopsis thaliana GN=SIS3
PE=2 SV=2
Length = 358
Score = 419 bits (1077), Expect = e-116, Method: Compositional matrix adjust.
Identities = 204/249 (81%), Positives = 225/249 (90%)
Query: 1 MAIRGVDFKWYDGFFLSMLATSVIIVAINWKRYHLCTYPLHIWIVVDYTTVFVFRLLMFV 60
MA+RGVDFKWYDGFFLSMLATSVIIVA+NW RY C YPLHIWIVVDYTTVF+FR+ MFV
Sbjct: 1 MAMRGVDFKWYDGFFLSMLATSVIIVAVNWNRYRACEYPLHIWIVVDYTTVFIFRVFMFV 60
Query: 61 DNGLASGMGLDLGWQQRYARFCGRVVVLSILSLLLYPFLWAWTIIGTLWFTSARDCLPEE 120
DNGLASG+GLD G QQR A FCGRVVVLS+LSLLLYPFLWAWT+IGT WFT ++ CLPEE
Sbjct: 61 DNGLASGLGLDFGSQQRNAMFCGRVVVLSVLSLLLYPFLWAWTVIGTQWFTKSKTCLPEE 120
Query: 121 GQKWGFLIWLLFSYCGLLCIACMSMGKWLTRRQAHSIRAQQGIPVSEYGVLLDMIRVPEW 180
GQKWGFLIWL+FSYCGLLCIA + +GKWLTRRQ H +RAQQGIP+SE+G+L+DMIRVP+W
Sbjct: 121 GQKWGFLIWLMFSYCGLLCIAFICVGKWLTRRQVHLLRAQQGIPISEFGILVDMIRVPDW 180
Query: 181 AFEAAGQEMRGIGQDTAAYHPGLYLTAAQREAVEALIQELPKFRLKAVPTDCSECPICLE 240
AFEAAGQEMRGI QD A YHPGLYLT AQ EAVEALIQELPKFRLKAVP DC EC ICLE
Sbjct: 181 AFEAAGQEMRGISQDAATYHPGLYLTPAQTEAVEALIQELPKFRLKAVPDDCGECLICLE 240
Query: 241 EFHVGNEVK 249
EFH+G+EV+
Sbjct: 241 EFHIGHEVR 249
>sp|Q9FKX5|NIPL1_ARATH NEP1-interacting protein-like 1 OS=Arabidopsis thaliana GN=ATL27
PE=2 SV=1
Length = 221
Score = 35.4 bits (80), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 30/69 (43%)
Query: 181 AFEAAGQEMRGIGQDTAAYHPGLYLTAAQREAVEALIQELPKFRLKAVPTDCSECPICLE 240
A +A Q G + H ++ TA + + +PK R+ + C +CL+
Sbjct: 122 AMLSAVQSQMGAVESQFQDHTDIFDTAISKGLTGDSLNRIPKVRITDTSPEIVSCSVCLQ 181
Query: 241 EFHVGNEVK 249
+F VG V+
Sbjct: 182 DFQVGETVR 190
>sp|P12567|HEMA_RINDK Hemagglutinin glycoprotein OS=Rinderpest virus (strain Kabete O)
GN=H PE=3 SV=1
Length = 609
Score = 35.4 bits (80), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 77/196 (39%), Gaps = 39/196 (19%)
Query: 78 YARFCGRVVVLSILSLLLYPFLWAWTIIGTLWFTSARDC---LPEEGQKWGFLIWLLFSY 134
Y ++C ++++L+ L T++ T R+C +GQ + L Y
Sbjct: 150 YDQYCAHTAAEDLITMLVNSSLTGTTVLRTSLVNLRRNCTGPTTTKGQFSNISLTLSGIY 209
Query: 135 CG-------LLCIACMSM-------GKWLTRRQAHSIRAQQGIPVSEYGVLLDMIRVPEW 180
G ++ I M GK+ R + SI QQ V E G++
Sbjct: 210 SGRGYNISSMITITGKGMYGSTYLVGKYNQRARRPSIVWQQDYRVFEVGII--------- 260
Query: 181 AFEAAGQEMRGIGQDTAAYHPGLYLTAAQREAVEALIQELPKFRLKAVPTDC-SECPICL 239
R +G T +H YL ++ +E + L + +L A+ C ++ P+ L
Sbjct: 261 ---------RELGVGTPVFHMTNYLELPRQPELETCMLALGESKLAAL---CLADSPVAL 308
Query: 240 EEFHVGNEVKISFLSI 255
VG++ KI F+ +
Sbjct: 309 HYGRVGDDNKIRFVKL 324
>sp|Q8GT74|NIP2_ARATH NEP1-interacting protein 2 OS=Arabidopsis thaliana GN=NIP2 PE=1
SV=1
Length = 241
Score = 34.3 bits (77), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Query: 176 RVPEWAFEAAGQEMRGIGQDTA-AYHPGLYLTAAQREAVEALIQELPKFRLKAVP-TDCS 233
R+ A +M + DTA H L+ T + L++++PK + TD S
Sbjct: 133 RIGPAMLSAVQSQMGAV--DTAFDDHTSLFDTGGSKGLTGDLVEKIPKMTITGNNNTDAS 190
Query: 234 E----CPICLEEFHVGNEVK 249
E C +CL++F +G V+
Sbjct: 191 ENTDSCSVCLQDFQLGETVR 210
>sp|F7EP40|ZNRF1_XENTR E3 ubiquitin-protein ligase znrf1 OS=Xenopus tropicalis GN=znrf1
PE=3 SV=1
Length = 195
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 231 DCSECPICLEEFHVGNEV-KISFLSIFYSSCSVSDFTYLRCGIEH 274
D EC ICLEE G+ + ++ L I++ SC S F RC EH
Sbjct: 148 DAGECVICLEELSQGDTIARLPCLCIYHKSCIDSWFEVNRCCPEH 192
>sp|Q66KG7|ZNRF1_XENLA E3 ubiquitin-protein ligase znrf1 OS=Xenopus laevis GN=znrf1 PE=2
SV=1
Length = 195
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 231 DCSECPICLEEFHVGNEV-KISFLSIFYSSCSVSDFTYLRCGIEH 274
D EC ICLEE G+ + ++ L I++ SC S F RC EH
Sbjct: 148 DAGECVICLEELSQGDTIARLPCLCIYHKSCIDSWFEVNRCCPEH 192
>sp|Q9LM69|ATL80_ARATH RING-H2 finger protein ATL80 OS=Arabidopsis thaliana GN=ATL80 PE=1
SV=1
Length = 197
Score = 32.3 bits (72), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 184 AAGQEMRGIGQDTAAYHPGLYLTAAQREAVEALIQELPKFRLKAVPTDC---SECPICLE 240
AAG Q + P + AA + + ++Q LPK + +EC ICL
Sbjct: 60 AAGNRTVSGSQTQSPQPP---VAAANKGLKKKVLQSLPKLTFSPESPESEKFAECAICLA 116
Query: 241 EFHVGNEVKI 250
EF G+E+++
Sbjct: 117 EFSAGDELRV 126
>sp|Q5M974|RN181_XENTR E3 ubiquitin-protein ligase RNF181 OS=Xenopus tropicalis GN=rnf181
PE=2 SV=1
Length = 156
Score = 32.0 bits (71), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 212 AVEALIQELPKFRLKAVPTDCS-ECPICLEEFHVGNEVK-ISFLSIFYSSC 260
A + +++ LPK + D + +CP+CL EF G V+ + +F+SSC
Sbjct: 55 AAKKVVESLPKVTVTPEQADAALKCPVCLLEFEEGETVRQLPCEHLFHSSC 105
>sp|P13540|MYH7_MESAU Myosin-7 OS=Mesocricetus auratus GN=MYH7 PE=2 SV=2
Length = 1934
Score = 31.2 bits (69), Expect = 8.3, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 123 KWGFLIWLLFSYCGLLCIACMSMGKWLTRRQAHSIRAQQGIPVSE 167
K G+ W++++Y GL C+ ++ KWL A + A +G SE
Sbjct: 105 KDGYASWMIYTYSGLFCVT-VNPYKWLPVYNAEVVAAYRGKKRSE 148
>sp|Q81I00|CLS1_BACCR Cardiolipin synthase 1 OS=Bacillus cereus (strain ATCC 14579 / DSM
31) GN=cls1 PE=3 SV=1
Length = 509
Score = 31.2 bits (69), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Query: 95 LYPF---LWAWTIIGTLWFTSARDCLPEEGQKWGFLIWLLFSYCGLLCIACMSMGKWLTR 151
LY F LW+ TI+G + + P+ W FL+ L G+L A +W +
Sbjct: 29 LYTFVGALWSITIVGISFVIFIENRSPQSTLAW-FLVLALLPIIGVLLYAIFGRSRWRRK 87
Query: 152 RQAHSIRAQQGI 163
+ H Q+ +
Sbjct: 88 KHLHRSEEQRKL 99
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.330 0.142 0.482
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,440,802
Number of Sequences: 539616
Number of extensions: 4069971
Number of successful extensions: 10724
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 10718
Number of HSP's gapped (non-prelim): 20
length of query: 274
length of database: 191,569,459
effective HSP length: 116
effective length of query: 158
effective length of database: 128,974,003
effective search space: 20377892474
effective search space used: 20377892474
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 60 (27.7 bits)