Query 024019
Match_columns 274
No_of_seqs 122 out of 275
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 16:48:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024019.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024019hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.1 4.8E-12 1.6E-16 95.8 -0.3 62 212-273 17-82 (91)
2 1x4j_A Ring finger protein 38; 99.1 7.7E-12 2.6E-16 90.6 -1.6 59 215-273 4-65 (75)
3 1iym_A EL5; ring-H2 finger, ub 98.7 3.1E-09 1.1E-13 72.1 2.1 42 232-273 5-48 (55)
4 2ect_A Ring finger protein 126 98.5 5.5E-08 1.9E-12 70.3 2.5 42 232-273 15-57 (78)
5 2kiz_A E3 ubiquitin-protein li 98.4 3.8E-08 1.3E-12 69.6 0.1 42 232-273 14-56 (69)
6 2ep4_A Ring finger protein 24; 98.4 3.7E-08 1.3E-12 70.5 -0.0 42 232-273 15-57 (74)
7 2ecl_A Ring-box protein 2; RNF 98.4 2.5E-08 8.4E-13 74.1 -1.3 39 235-273 29-69 (81)
8 2d8s_A Cellular modulator of i 98.2 1.9E-07 6.7E-12 70.5 0.7 40 232-272 15-62 (80)
9 1v87_A Deltex protein 2; ring- 98.2 9.2E-08 3.2E-12 73.6 -1.3 40 233-272 26-86 (114)
10 3dpl_R Ring-box protein 1; ubi 98.1 4E-07 1.4E-11 72.1 1.0 56 217-272 14-93 (106)
11 2ecm_A Ring finger and CHY zin 98.1 5.3E-07 1.8E-11 60.8 0.7 42 232-273 5-48 (55)
12 4a0k_B E3 ubiquitin-protein li 98.1 1.1E-07 3.7E-12 77.1 -3.4 41 232-272 48-104 (117)
13 3ng2_A RNF4, snurf, ring finge 97.9 1E-06 3.4E-11 62.1 -0.7 42 232-273 10-56 (71)
14 2ea6_A Ring finger protein 4; 97.9 1.2E-06 4.1E-11 61.0 -0.6 42 232-273 15-61 (69)
15 2xeu_A Ring finger protein 4; 97.8 1.4E-06 4.8E-11 59.8 -1.5 42 232-273 3-49 (64)
16 1chc_A Equine herpes virus-1 r 97.8 5.7E-06 2E-10 58.0 1.1 39 233-273 6-45 (68)
17 2ecn_A Ring finger protein 141 97.7 5.4E-06 1.8E-10 58.6 0.5 37 232-272 15-52 (70)
18 2ct2_A Tripartite motif protei 97.6 9.5E-06 3.2E-10 59.0 0.1 42 232-273 15-61 (88)
19 4ap4_A E3 ubiquitin ligase RNF 97.5 9.2E-06 3.1E-10 62.5 -0.7 42 232-273 7-53 (133)
20 2ecj_A Tripartite motif-contai 97.5 3.5E-05 1.2E-09 52.1 1.7 39 232-273 15-57 (58)
21 2d8t_A Dactylidin, ring finger 97.4 2.4E-05 8E-10 55.8 0.6 39 232-273 15-54 (71)
22 4ap4_A E3 ubiquitin ligase RNF 97.3 1.9E-05 6.5E-10 60.7 -1.2 42 232-273 72-118 (133)
23 2ysj_A Tripartite motif-contai 97.3 6E-05 2.1E-09 52.2 1.0 39 232-273 20-62 (63)
24 2djb_A Polycomb group ring fin 97.2 5.3E-05 1.8E-09 54.1 -0.0 40 232-273 15-55 (72)
25 2yur_A Retinoblastoma-binding 97.2 9.3E-05 3.2E-09 53.3 1.1 39 232-273 15-57 (74)
26 2ct0_A Non-SMC element 1 homol 97.1 0.00013 4.3E-09 55.0 0.9 37 233-272 16-56 (74)
27 2egp_A Tripartite motif-contai 97.0 0.00021 7E-09 51.0 1.6 39 232-273 12-58 (79)
28 1vyx_A ORF K3, K3RING; zinc-bi 97.0 0.00012 4.1E-09 52.5 0.1 37 233-272 7-51 (60)
29 2csy_A Zinc finger protein 183 97.0 0.00011 3.9E-09 53.3 -0.0 39 232-273 15-54 (81)
30 2ysl_A Tripartite motif-contai 97.0 0.00018 6.3E-09 50.7 1.0 39 232-273 20-62 (73)
31 4ayc_A E3 ubiquitin-protein li 96.9 0.00013 4.5E-09 58.5 -0.1 38 233-273 54-92 (138)
32 2ecy_A TNF receptor-associated 96.9 0.00024 8.3E-09 49.7 1.1 39 232-273 15-55 (66)
33 2ecv_A Tripartite motif-contai 96.9 0.00035 1.2E-08 49.9 1.7 39 232-273 19-64 (85)
34 2y43_A E3 ubiquitin-protein li 96.7 0.00023 7.7E-09 53.6 0.0 39 233-273 23-62 (99)
35 1jm7_A BRCA1, breast cancer ty 96.7 0.00022 7.6E-09 54.0 -0.0 38 233-273 22-63 (112)
36 2ecw_A Tripartite motif-contai 96.7 0.00035 1.2E-08 49.9 0.8 39 232-273 19-64 (85)
37 2ckl_A Polycomb group ring fin 96.7 0.00029 1E-08 53.9 0.1 40 232-273 15-55 (108)
38 3lrq_A E3 ubiquitin-protein li 96.5 0.00029 9.8E-09 53.7 -0.7 39 233-273 23-63 (100)
39 2ckl_B Ubiquitin ligase protei 96.5 0.00036 1.2E-08 57.0 -0.4 39 233-273 55-95 (165)
40 3k1l_B Fancl; UBC, ring, RWD, 96.3 0.0011 3.6E-08 63.7 1.6 50 219-268 289-350 (381)
41 1t1h_A Gspef-atpub14, armadill 96.1 0.0011 3.8E-08 47.4 0.5 39 232-273 8-48 (78)
42 3ztg_A E3 ubiquitin-protein li 96.1 0.00087 3E-08 49.4 -0.3 39 232-273 13-55 (92)
43 3l11_A E3 ubiquitin-protein li 96.0 0.0015 5.2E-08 50.2 0.7 38 233-273 16-55 (115)
44 1g25_A CDK-activating kinase a 95.9 0.0011 3.8E-08 46.2 -0.2 42 232-273 3-48 (65)
45 1bor_A Transcription factor PM 95.9 0.0057 2E-07 42.0 3.3 36 231-272 5-41 (56)
46 3hct_A TNF receptor-associated 95.5 0.0015 5.1E-08 50.8 -1.1 39 232-273 18-58 (118)
47 3fl2_A E3 ubiquitin-protein li 95.4 0.002 6.9E-08 50.3 -0.7 38 233-273 53-92 (124)
48 1jm7_B BARD1, BRCA1-associated 95.2 0.012 4E-07 45.7 3.0 36 233-273 23-60 (117)
49 1rmd_A RAG1; V(D)J recombinati 95.0 0.0027 9.4E-08 48.8 -1.1 38 233-273 24-63 (116)
50 2y1n_A E3 ubiquitin-protein li 95.0 0.0048 1.6E-07 59.0 0.4 38 233-273 333-372 (389)
51 1z6u_A NP95-like ring finger p 94.6 0.0042 1.4E-07 51.0 -0.9 38 233-273 79-118 (150)
52 1e4u_A Transcriptional repress 93.4 0.022 7.6E-07 42.3 1.0 42 231-273 10-55 (78)
53 3knv_A TNF receptor-associated 93.1 0.0064 2.2E-07 49.5 -2.4 39 231-272 30-70 (141)
54 1wim_A KIAA0161 protein; ring 92.9 0.018 6E-07 43.0 -0.1 35 233-267 6-41 (94)
55 3hcs_A TNF receptor-associated 90.1 0.041 1.4E-06 44.9 -0.8 40 231-273 17-58 (170)
56 4ic3_A E3 ubiquitin-protein li 89.8 0.089 3.1E-06 37.9 0.9 33 233-272 25-59 (74)
57 2c2l_A CHIP, carboxy terminus 89.1 0.17 6E-06 42.9 2.3 39 232-273 208-248 (281)
58 2yu4_A E3 SUMO-protein ligase 88.0 0.072 2.5E-06 40.1 -0.7 39 232-273 7-53 (94)
59 2kre_A Ubiquitin conjugation f 84.1 0.23 7.9E-06 38.2 0.3 38 233-273 30-68 (100)
60 1wgm_A Ubiquitin conjugation f 84.0 0.24 8.4E-06 37.9 0.4 38 233-273 23-62 (98)
61 2kr4_A Ubiquitin conjugation f 83.1 0.2 6.8E-06 37.2 -0.4 38 233-273 15-53 (85)
62 2vje_A E3 ubiquitin-protein li 82.5 0.19 6.4E-06 35.4 -0.7 39 233-272 9-49 (64)
63 3t6p_A Baculoviral IAP repeat- 82.5 0.63 2.2E-05 43.4 2.6 35 232-273 295-331 (345)
64 2ecg_A Baculoviral IAP repeat- 82.4 0.28 9.6E-06 35.1 0.2 33 233-272 26-60 (75)
65 2ea5_A Cell growth regulator w 80.1 1 3.4E-05 32.2 2.4 35 231-272 14-50 (68)
66 2yt5_A Metal-response element- 72.7 2.2 7.4E-05 30.0 2.5 35 232-266 6-43 (66)
67 2f42_A STIP1 homology and U-bo 71.3 0.67 2.3E-05 39.8 -0.6 39 232-273 106-146 (179)
68 1we9_A PHD finger family prote 70.9 2.1 7.2E-05 30.0 2.1 33 233-265 7-41 (64)
69 2vje_B MDM4 protein; proto-onc 70.0 0.61 2.1E-05 32.6 -0.9 39 233-272 8-48 (63)
70 2bay_A PRE-mRNA splicing facto 68.8 0.58 2E-05 33.1 -1.3 38 233-272 4-42 (61)
71 3nw0_A Non-structural maintena 68.5 1.1 3.6E-05 39.7 0.1 39 232-272 180-221 (238)
72 3htk_C E3 SUMO-protein ligase 68.1 1.1 3.9E-05 41.1 0.2 39 233-273 182-223 (267)
73 2yql_A PHD finger protein 21A; 62.8 5.1 0.00017 27.6 2.7 32 232-267 9-42 (56)
74 2kgg_A Histone demethylase jar 59.3 3.5 0.00012 28.1 1.3 30 234-263 4-36 (52)
75 1mm2_A MI2-beta; PHD, zinc fin 59.1 6.7 0.00023 27.6 2.8 31 233-267 10-42 (61)
76 1xwh_A Autoimmune regulator; P 58.3 6.2 0.00021 28.1 2.5 32 232-267 8-41 (66)
77 2xb1_A Pygopus homolog 2, B-ce 56.2 3.4 0.00011 32.3 0.9 31 233-263 4-37 (105)
78 2lri_C Autoimmune regulator; Z 55.4 3.6 0.00012 29.9 0.9 33 232-268 12-46 (66)
79 2vpb_A Hpygo1, pygopus homolog 54.2 2.2 7.6E-05 30.9 -0.4 31 233-263 9-42 (65)
80 1f62_A Transcription factor WS 53.9 3.1 0.00011 27.9 0.3 33 234-267 2-36 (51)
81 2k16_A Transcription initiatio 52.1 3.7 0.00013 29.6 0.5 34 233-267 19-54 (75)
82 2puy_A PHD finger protein 21A; 49.6 8.3 0.00029 26.8 2.0 31 233-267 6-38 (60)
83 2e6r_A Jumonji/ARID domain-con 47.6 13 0.00043 28.4 2.9 37 231-268 15-53 (92)
84 2yho_A E3 ubiquitin-protein li 45.8 6.2 0.00021 28.7 0.9 29 233-264 19-49 (79)
85 1fp0_A KAP-1 corepressor; PHD 43.4 14 0.00049 28.4 2.6 31 233-267 26-58 (88)
86 2l43_A N-teminal domain from h 42.6 9.4 0.00032 28.9 1.4 33 232-264 25-60 (88)
87 2lv9_A Histone-lysine N-methyl 42.3 13 0.00046 28.4 2.3 33 233-266 29-62 (98)
88 2ysm_A Myeloid/lymphoid or mix 42.0 21 0.0007 27.3 3.3 37 232-268 7-44 (111)
89 2l5u_A Chromodomain-helicase-D 41.5 8.5 0.00029 27.1 1.0 32 232-267 11-44 (61)
90 1wee_A PHD finger family prote 38.7 13 0.00043 26.8 1.6 31 233-264 17-49 (72)
91 3u3z_A Microcephalin; DNA repa 37.4 15 0.00052 30.8 2.1 51 188-240 2-54 (199)
92 1wil_A KIAA1045 protein; ring 36.7 12 0.0004 29.5 1.2 28 232-263 15-46 (89)
93 2j89_A Methionine sulfoxide re 35.1 9.6 0.00033 35.0 0.5 36 184-220 171-208 (261)
94 2ku3_A Bromodomain-containing 31.7 13 0.00043 27.3 0.6 34 231-264 15-51 (71)
95 3bqh_A PILB, peptide methionin 30.5 17 0.0006 31.7 1.4 36 184-220 79-116 (193)
96 3v43_A Histone acetyltransfera 30.4 22 0.00076 27.5 1.8 34 232-268 61-99 (112)
97 1nwa_A Peptide methionine sulf 30.4 13 0.00044 32.9 0.5 38 184-222 98-137 (203)
98 1ff3_A Peptide methionine sulf 28.9 15 0.0005 32.7 0.6 36 184-220 119-156 (211)
99 4gwb_A Peptide methionine sulf 28.8 14 0.00049 31.6 0.5 36 184-220 75-112 (168)
100 3ipz_A Monothiol glutaredoxin- 28.4 47 0.0016 24.8 3.3 35 205-239 3-37 (109)
101 3pim_A Peptide methionine sulf 27.4 14 0.00048 32.2 0.2 37 184-221 104-142 (187)
102 3gx8_A Monothiol glutaredoxin- 27.2 54 0.0018 25.2 3.5 35 205-239 1-35 (121)
103 2e6s_A E3 ubiquitin-protein li 27.0 28 0.00097 25.8 1.8 34 234-268 28-63 (77)
104 2kwj_A Zinc finger protein DPF 26.0 21 0.00071 27.8 1.0 32 234-265 3-42 (114)
105 3o70_A PHD finger protein 13; 25.5 33 0.0011 24.7 1.9 31 233-265 20-52 (68)
106 3asl_A E3 ubiquitin-protein li 25.4 24 0.00081 25.6 1.1 34 234-268 20-55 (70)
107 2kwj_A Zinc finger protein DPF 25.3 28 0.00095 27.1 1.6 35 233-268 59-95 (114)
108 1wev_A Riken cDNA 1110020M19; 25.0 32 0.0011 25.8 1.8 34 233-266 17-53 (88)
109 1wep_A PHF8; structural genomi 23.9 18 0.0006 26.4 0.2 30 233-263 13-44 (79)
110 1zfo_A LAsp-1; LIM domain, zin 23.0 39 0.0013 20.7 1.6 27 233-260 4-30 (31)
111 2rsd_A E3 SUMO-protein ligase 22.8 35 0.0012 24.2 1.6 29 233-262 11-42 (68)
112 1fvg_A Peptide methionine sulf 22.6 20 0.00068 31.5 0.3 36 184-220 120-157 (199)
113 3e0m_A Peptide methionine sulf 22.0 26 0.00089 32.8 0.9 36 184-220 77-114 (313)
114 3ql9_A Transcriptional regulat 21.8 13 0.00045 30.5 -1.0 26 233-265 58-88 (129)
115 2jun_A Midline-1; B-BOX, TRIM, 20.8 36 0.0012 24.9 1.3 31 233-263 4-35 (101)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.12 E-value=4.8e-12 Score=95.77 Aligned_cols=62 Identities=19% Similarity=0.213 Sum_probs=53.7
Q ss_pred HHHHHHhcCCceeeecCCC---CCcccccccccccccceeeecccC-cCCcCCcccccccccCCCC
Q 024019 212 AVEALIQELPKFRLKAVPT---DCSECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFTYLRCGIE 273 (274)
Q Consensus 212 avEa~IqaLP~~~~t~~~~---d~~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~~~~~~~~ 273 (274)
++++.|++||.+++++... +..+|+||+++|+.|+.++.|||- .||.+||..|+..++.||-
T Consensus 17 ~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~ 82 (91)
T 2l0b_A 17 ASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPV 82 (91)
T ss_dssp CCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTT
T ss_pred CCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcC
Confidence 4556899999999986532 336899999999999999999966 9999999999999999983
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.06 E-value=7.7e-12 Score=90.55 Aligned_cols=59 Identities=15% Similarity=0.285 Sum_probs=51.3
Q ss_pred HHHhcCCceeeecCC--CCCcccccccccccccceeeecccC-cCCcCCcccccccccCCCC
Q 024019 215 ALIQELPKFRLKAVP--TDCSECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFTYLRCGIE 273 (274)
Q Consensus 215 a~IqaLP~~~~t~~~--~d~~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~~~~~~~~ 273 (274)
+.|++||.++++... .+..+|+||+++|+.++.++.|||- .||.+||..|+..+..||-
T Consensus 4 ~~i~~lp~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~ 65 (75)
T 1x4j_A 4 GSSGQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPI 65 (75)
T ss_dssp CCCSSCCCEEBCSSSCSSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTT
T ss_pred hhHhhCCcEEecCccccCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcC
Confidence 457899999997653 2347899999999999999999966 9999999999999999983
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.73 E-value=3.1e-09 Score=72.05 Aligned_cols=42 Identities=21% Similarity=0.260 Sum_probs=38.6
Q ss_pred CcccccccccccccceeeecccC--cCCcCCcccccccccCCCC
Q 024019 232 CSECPICLEEFHVGNEVKISFLS--IFYSSCSVSDFTYLRCGIE 273 (274)
Q Consensus 232 ~~eCsICLedFe~GEevR~LPcC--~FH~~CI~~w~~~~~~~~~ 273 (274)
..+|+||+++|++|+.++.+|.| .||.+|+..|++.+..||.
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~ 48 (55)
T 1iym_A 5 GVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPL 48 (55)
T ss_dssp SCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSS
T ss_pred CCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcC
Confidence 36899999999999999999955 9999999999999999983
No 4
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.47 E-value=5.5e-08 Score=70.29 Aligned_cols=42 Identities=26% Similarity=0.470 Sum_probs=38.8
Q ss_pred CcccccccccccccceeeecccC-cCCcCCcccccccccCCCC
Q 024019 232 CSECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFTYLRCGIE 273 (274)
Q Consensus 232 ~~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~~~~~~~~ 273 (274)
..+|+||+++|+.++.++.|||- .||.+||..|++.++.||.
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~ 57 (78)
T 2ect_A 15 GLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPV 57 (78)
T ss_dssp SCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTT
T ss_pred CCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcC
Confidence 36899999999999999999977 9999999999999999984
No 5
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.39 E-value=3.8e-08 Score=69.63 Aligned_cols=42 Identities=19% Similarity=0.249 Sum_probs=38.7
Q ss_pred CcccccccccccccceeeecccC-cCCcCCcccccccccCCCC
Q 024019 232 CSECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFTYLRCGIE 273 (274)
Q Consensus 232 ~~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~~~~~~~~ 273 (274)
..+|+||+++|+.++.++.+||- .||.+|+..|+..++.||-
T Consensus 14 ~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~ 56 (69)
T 2kiz_A 14 EEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPI 56 (69)
T ss_dssp CCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTT
T ss_pred CCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcC
Confidence 36899999999999999999977 9999999999999998983
No 6
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.39 E-value=3.7e-08 Score=70.53 Aligned_cols=42 Identities=21% Similarity=0.384 Sum_probs=38.6
Q ss_pred CcccccccccccccceeeecccC-cCCcCCcccccccccCCCC
Q 024019 232 CSECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFTYLRCGIE 273 (274)
Q Consensus 232 ~~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~~~~~~~~ 273 (274)
..+|+||+++|+.++.++.|||- .||.+||..|+..++.||.
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~ 57 (74)
T 2ep4_A 15 HELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPL 57 (74)
T ss_dssp SCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTT
T ss_pred CCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCC
Confidence 36899999999999999999966 9999999999999998983
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.37 E-value=2.5e-08 Score=74.13 Aligned_cols=39 Identities=15% Similarity=0.005 Sum_probs=31.0
Q ss_pred cccccccccccceeeecccC--cCCcCCcccccccccCCCC
Q 024019 235 CPICLEEFHVGNEVKISFLS--IFYSSCSVSDFTYLRCGIE 273 (274)
Q Consensus 235 CsICLedFe~GEevR~LPcC--~FH~~CI~~w~~~~~~~~~ 273 (274)
|+||+++|+.+|.++.+|.| .||.+||+.|++.+..||-
T Consensus 29 C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~ 69 (81)
T 2ecl_A 29 CLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPL 69 (81)
T ss_dssp CTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTT
T ss_pred CcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCC
Confidence 44444444567889999856 9999999999999999983
No 8
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.23 E-value=1.9e-07 Score=70.53 Aligned_cols=40 Identities=20% Similarity=0.215 Sum_probs=34.5
Q ss_pred CcccccccccccccceeeecccC------cCCcCCcccccccc--cCCC
Q 024019 232 CSECPICLEEFHVGNEVKISFLS------IFYSSCSVSDFTYL--RCGI 272 (274)
Q Consensus 232 ~~eCsICLedFe~GEevR~LPcC------~FH~~CI~~w~~~~--~~~~ 272 (274)
..+|+||+++|++++.+ .+||. .||.+|++.|+... +.||
T Consensus 15 ~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~Cp 62 (80)
T 2d8s_A 15 QDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCE 62 (80)
T ss_dssp SCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCS
T ss_pred CCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCC
Confidence 36899999999999887 59982 89999999999886 4776
No 9
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.22 E-value=9.2e-08 Score=73.65 Aligned_cols=40 Identities=20% Similarity=0.326 Sum_probs=33.5
Q ss_pred cccccccccccccc---------------eeeecccC-cCCcCCccccc-----ccccCCC
Q 024019 233 SECPICLEEFHVGN---------------EVKISFLS-IFYSSCSVSDF-----TYLRCGI 272 (274)
Q Consensus 233 ~eCsICLedFe~GE---------------evR~LPcC-~FH~~CI~~w~-----~~~~~~~ 272 (274)
.+|+||+++|++++ .++.+||. .||.+||..|+ .....||
T Consensus 26 ~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP 86 (114)
T 1v87_A 26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCP 86 (114)
T ss_dssp CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCT
T ss_pred CcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCC
Confidence 58999999998765 45578877 99999999999 5677887
No 10
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.15 E-value=4e-07 Score=72.08 Aligned_cols=56 Identities=14% Similarity=0.111 Sum_probs=40.8
Q ss_pred HhcCCceeeecC--------CCCCccccccccccccc---------------ceeeecccC-cCCcCCcccccccccCCC
Q 024019 217 IQELPKFRLKAV--------PTDCSECPICLEEFHVG---------------NEVKISFLS-IFYSSCSVSDFTYLRCGI 272 (274)
Q Consensus 217 IqaLP~~~~t~~--------~~d~~eCsICLedFe~G---------------EevR~LPcC-~FH~~CI~~w~~~~~~~~ 272 (274)
.++.|++++++- ..+...|+||+++|++. ..++.+||. .||..||++|+..+..||
T Consensus 14 ~~~~~r~~ik~~~~v~~w~~d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP 93 (106)
T 3dpl_R 14 GAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCP 93 (106)
T ss_dssp ---CCSEEEEEEEEEEEEEESSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCS
T ss_pred ccccCceeEEEEEEeeEeecCCCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCc
Confidence 355666666532 12336899999999865 136778866 999999999999999998
No 11
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.11 E-value=5.3e-07 Score=60.77 Aligned_cols=42 Identities=21% Similarity=0.310 Sum_probs=35.6
Q ss_pred Cccccccccccccc-ceeeecccC-cCCcCCcccccccccCCCC
Q 024019 232 CSECPICLEEFHVG-NEVKISFLS-IFYSSCSVSDFTYLRCGIE 273 (274)
Q Consensus 232 ~~eCsICLedFe~G-EevR~LPcC-~FH~~CI~~w~~~~~~~~~ 273 (274)
..+|+||+++|.++ +.++.+||- .||.+|+..|+.....||.
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~ 48 (55)
T 2ecm_A 5 SSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPL 48 (55)
T ss_dssp CCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTT
T ss_pred CCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCC
Confidence 36899999999765 457788866 9999999999999888884
No 12
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.09 E-value=1.1e-07 Score=77.13 Aligned_cols=41 Identities=15% Similarity=0.260 Sum_probs=0.4
Q ss_pred Ccccccccccccc-------------cceeee--cccC-cCCcCCcccccccccCCC
Q 024019 232 CSECPICLEEFHV-------------GNEVKI--SFLS-IFYSSCSVSDFTYLRCGI 272 (274)
Q Consensus 232 ~~eCsICLedFe~-------------GEevR~--LPcC-~FH~~CI~~w~~~~~~~~ 272 (274)
+..|+||+++|++ ||+... +||. .||..||++|+..+..||
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP 104 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCP 104 (117)
T ss_dssp C--------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCC
Confidence 3689999999986 333333 4655 999999999999999998
No 13
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=97.92 E-value=1e-06 Score=62.07 Aligned_cols=42 Identities=19% Similarity=0.447 Sum_probs=36.3
Q ss_pred Ccccccccccccc----cceeeecccC-cCCcCCcccccccccCCCC
Q 024019 232 CSECPICLEEFHV----GNEVKISFLS-IFYSSCSVSDFTYLRCGIE 273 (274)
Q Consensus 232 ~~eCsICLedFe~----GEevR~LPcC-~FH~~CI~~w~~~~~~~~~ 273 (274)
..+|+||+++|.+ ++.+..+||- .||.+|+..|++....||.
T Consensus 10 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~ 56 (71)
T 3ng2_A 10 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPT 56 (71)
T ss_dssp CCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTT
T ss_pred CCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCC
Confidence 4789999999986 4667888877 9999999999999888884
No 14
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.90 E-value=1.2e-06 Score=61.03 Aligned_cols=42 Identities=17% Similarity=0.359 Sum_probs=36.0
Q ss_pred Cccccccccccccc----ceeeecccC-cCCcCCcccccccccCCCC
Q 024019 232 CSECPICLEEFHVG----NEVKISFLS-IFYSSCSVSDFTYLRCGIE 273 (274)
Q Consensus 232 ~~eCsICLedFe~G----EevR~LPcC-~FH~~CI~~w~~~~~~~~~ 273 (274)
..+|+||+++|++. +.+..+||- .||.+||..|++.++.||.
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~ 61 (69)
T 2ea6_A 15 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPT 61 (69)
T ss_dssp CCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTT
T ss_pred CCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCC
Confidence 46899999999874 555788877 9999999999999988984
No 15
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=97.80 E-value=1.4e-06 Score=59.85 Aligned_cols=42 Identities=17% Similarity=0.356 Sum_probs=35.9
Q ss_pred Cccccccccccccc----ceeeecccC-cCCcCCcccccccccCCCC
Q 024019 232 CSECPICLEEFHVG----NEVKISFLS-IFYSSCSVSDFTYLRCGIE 273 (274)
Q Consensus 232 ~~eCsICLedFe~G----EevR~LPcC-~FH~~CI~~w~~~~~~~~~ 273 (274)
..+|+||+++|++. +.+..+||- .||.+|+..|++.+..||.
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~ 49 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPT 49 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTT
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCC
Confidence 36899999999864 556788877 9999999999999988884
No 16
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=97.77 E-value=5.7e-06 Score=58.00 Aligned_cols=39 Identities=21% Similarity=0.158 Sum_probs=34.0
Q ss_pred cccccccccccccceeeecccC-cCCcCCcccccccccCCCC
Q 024019 233 SECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFTYLRCGIE 273 (274)
Q Consensus 233 ~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~~~~~~~~ 273 (274)
.+|+||++++++ .++.+||- .||.+|+..|++.+..||.
T Consensus 6 ~~C~IC~~~~~~--~~~~~~C~H~fc~~Ci~~~~~~~~~CP~ 45 (68)
T 1chc_A 6 ERCPICLEDPSN--YSMALPCLHAFCYVCITRWIRQNPTCPL 45 (68)
T ss_dssp CCCSSCCSCCCS--CEEETTTTEEESTTHHHHHHHHSCSTTT
T ss_pred CCCeeCCccccC--CcEecCCCCeeHHHHHHHHHhCcCcCcC
Confidence 689999999874 45789977 9999999999999999984
No 17
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.73 E-value=5.4e-06 Score=58.58 Aligned_cols=37 Identities=22% Similarity=0.152 Sum_probs=33.1
Q ss_pred CcccccccccccccceeeecccC-cCCcCCcccccccccCCC
Q 024019 232 CSECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFTYLRCGI 272 (274)
Q Consensus 232 ~~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~~~~~~~ 272 (274)
..+|+||++.+.+ ..+||- .||.+|+..|+...+.||
T Consensus 15 ~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP 52 (70)
T 2ecn_A 15 EEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCP 52 (70)
T ss_dssp CCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCH
T ss_pred CCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCC
Confidence 3689999999987 678977 999999999999888887
No 18
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.59 E-value=9.5e-06 Score=59.04 Aligned_cols=42 Identities=21% Similarity=0.278 Sum_probs=36.0
Q ss_pred Ccccccccccccccce-eeecccC-cCCcCCcccccccc---cCCCC
Q 024019 232 CSECPICLEEFHVGNE-VKISFLS-IFYSSCSVSDFTYL---RCGIE 273 (274)
Q Consensus 232 ~~eCsICLedFe~GEe-vR~LPcC-~FH~~CI~~w~~~~---~~~~~ 273 (274)
..+|+||++.|.+++. .+.+||- .||.+|+..|+... ..||.
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~ 61 (88)
T 2ct2_A 15 VLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPF 61 (88)
T ss_dssp CCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTT
T ss_pred CCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCC
Confidence 4789999999999886 7888966 99999999999875 67773
No 19
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.53 E-value=9.2e-06 Score=62.47 Aligned_cols=42 Identities=19% Similarity=0.447 Sum_probs=36.5
Q ss_pred Ccccccccccccc----cceeeecccC-cCCcCCcccccccccCCCC
Q 024019 232 CSECPICLEEFHV----GNEVKISFLS-IFYSSCSVSDFTYLRCGIE 273 (274)
Q Consensus 232 ~~eCsICLedFe~----GEevR~LPcC-~FH~~CI~~w~~~~~~~~~ 273 (274)
..+|+||+++|++ |+.+..+||- .||.+||..|++..+.||.
T Consensus 7 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~ 53 (133)
T 4ap4_A 7 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPT 53 (133)
T ss_dssp SCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTT
T ss_pred CCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCC
Confidence 4789999999986 4667888877 9999999999999999984
No 20
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.48 E-value=3.5e-05 Score=52.10 Aligned_cols=39 Identities=18% Similarity=0.146 Sum_probs=31.7
Q ss_pred CcccccccccccccceeeecccC-cCCcCCcccc---cccccCCCC
Q 024019 232 CSECPICLEEFHVGNEVKISFLS-IFYSSCSVSD---FTYLRCGIE 273 (274)
Q Consensus 232 ~~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w---~~~~~~~~~ 273 (274)
..+|+||++.+++. ..+||- .||.+||..| ++.++.||.
T Consensus 15 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~ 57 (58)
T 2ecj_A 15 EASCSVCLEYLKEP---VIIECGHNFCKACITRWWEDLERDFPCPV 57 (58)
T ss_dssp CCBCSSSCCBCSSC---CCCSSCCCCCHHHHHHHTTSSCCSCCCSC
T ss_pred CCCCccCCcccCcc---EeCCCCCccCHHHHHHHHHhcCCCCCCCC
Confidence 36899999999874 458866 9999999999 455677874
No 21
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.45 E-value=2.4e-05 Score=55.82 Aligned_cols=39 Identities=18% Similarity=0.158 Sum_probs=33.3
Q ss_pred CcccccccccccccceeeecccC-cCCcCCcccccccccCCCC
Q 024019 232 CSECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFTYLRCGIE 273 (274)
Q Consensus 232 ~~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~~~~~~~~ 273 (274)
..+|+||++.+++ ...+||- .||.+||..|+..+..||.
T Consensus 15 ~~~C~IC~~~~~~---~~~~~CgH~fC~~Ci~~~~~~~~~CP~ 54 (71)
T 2d8t_A 15 VPECAICLQTCVH---PVSLPCKHVFCYLCVKGASWLGKRCAL 54 (71)
T ss_dssp CCBCSSSSSBCSS---EEEETTTEEEEHHHHHHCTTCSSBCSS
T ss_pred CCCCccCCcccCC---CEEccCCCHHHHHHHHHHHHCCCcCcC
Confidence 3689999999976 3567966 9999999999999988884
No 22
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.33 E-value=1.9e-05 Score=60.67 Aligned_cols=42 Identities=17% Similarity=0.359 Sum_probs=35.3
Q ss_pred Cccccccccccccc----ceeeecccC-cCCcCCcccccccccCCCC
Q 024019 232 CSECPICLEEFHVG----NEVKISFLS-IFYSSCSVSDFTYLRCGIE 273 (274)
Q Consensus 232 ~~eCsICLedFe~G----EevR~LPcC-~FH~~CI~~w~~~~~~~~~ 273 (274)
..+|+||+++|++. +....+||- .||.+||++|++....||.
T Consensus 72 ~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~ 118 (133)
T 4ap4_A 72 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPT 118 (133)
T ss_dssp SCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTT
T ss_pred CCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCC
Confidence 37899999999874 444677766 9999999999999999983
No 23
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.28 E-value=6e-05 Score=52.24 Aligned_cols=39 Identities=18% Similarity=0.079 Sum_probs=32.0
Q ss_pred CcccccccccccccceeeecccC-cCCcCCcccccc---cccCCCC
Q 024019 232 CSECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFT---YLRCGIE 273 (274)
Q Consensus 232 ~~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~---~~~~~~~ 273 (274)
..+|+||++.|++ ...+||- .||.+||..|++ ..+.||.
T Consensus 20 ~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~ 62 (63)
T 2ysj_A 20 EVICPICLDILQK---PVTIDCGHNFCLKCITQIGETSCGFFKCPL 62 (63)
T ss_dssp CCBCTTTCSBCSS---CEECTTSSEECHHHHHHHHHHCSSCCCCSC
T ss_pred CCCCCcCCchhCC---eEEeCCCCcchHHHHHHHHHcCCCCCcCcC
Confidence 4789999999985 4457866 999999999998 4567874
No 24
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.19 E-value=5.3e-05 Score=54.10 Aligned_cols=40 Identities=25% Similarity=0.324 Sum_probs=32.8
Q ss_pred CcccccccccccccceeeecccC-cCCcCCcccccccccCCCC
Q 024019 232 CSECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFTYLRCGIE 273 (274)
Q Consensus 232 ~~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~~~~~~~~ 273 (274)
..+|+||++.|++ .+...||- .||.+||..|+...+.||.
T Consensus 15 ~~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~~~~~~~~CP~ 55 (72)
T 2djb_A 15 YILCSICKGYLID--ATTITECLHTFCKSCIVRHFYYSNRCPK 55 (72)
T ss_dssp GGSCTTTSSCCSS--CEECSSSCCEECHHHHHHHHHHCSSCTT
T ss_pred CCCCCCCChHHHC--cCEECCCCCHHHHHHHHHHHHcCCcCCC
Confidence 3689999999986 34334766 9999999999998888884
No 25
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=97.17 E-value=9.3e-05 Score=53.35 Aligned_cols=39 Identities=10% Similarity=0.099 Sum_probs=31.9
Q ss_pred CcccccccccccccceeeecccC--cCCcCCcccccccc--cCCCC
Q 024019 232 CSECPICLEEFHVGNEVKISFLS--IFYSSCSVSDFTYL--RCGIE 273 (274)
Q Consensus 232 ~~eCsICLedFe~GEevR~LPcC--~FH~~CI~~w~~~~--~~~~~ 273 (274)
..+|+||++.|++ -..+|+| .||.+||..|+... +.||.
T Consensus 15 ~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~ 57 (74)
T 2yur_A 15 ELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPT 57 (74)
T ss_dssp GGSCSSSCCCCTT---CEECSSSCCEECTTHHHHHHHHSSSSCCSS
T ss_pred CCCCcCCChHHhC---CeEcCCCCCHHHHHHHHHHHHhcCCCcCCC
Confidence 3789999999986 3459955 99999999999876 57874
No 26
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.06 E-value=0.00013 Score=55.00 Aligned_cols=37 Identities=16% Similarity=0.204 Sum_probs=32.3
Q ss_pred cccccccccccccceeeecccC--cCCcCCcccccccc--cCCC
Q 024019 233 SECPICLEEFHVGNEVKISFLS--IFYSSCSVSDFTYL--RCGI 272 (274)
Q Consensus 233 ~eCsICLedFe~GEevR~LPcC--~FH~~CI~~w~~~~--~~~~ 272 (274)
.+|+||.+.+..|+... .| .||..||..||... +.||
T Consensus 16 ~~C~IC~~~i~~g~~C~---~C~h~fH~~Ci~kWl~~~~~~~CP 56 (74)
T 2ct0_A 16 KICNICHSLLIQGQSCE---TCGIRMHLPCVAKYFQSNAEPRCP 56 (74)
T ss_dssp CBCSSSCCBCSSSEECS---SSCCEECHHHHHHHSTTCSSCCCT
T ss_pred CcCcchhhHcccCCccC---CCCchhhHHHHHHHHHhcCCCCCC
Confidence 68999999999987554 45 99999999999877 7888
No 27
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=97.01 E-value=0.00021 Score=51.04 Aligned_cols=39 Identities=18% Similarity=0.148 Sum_probs=32.1
Q ss_pred CcccccccccccccceeeecccC-cCCcCCccccccc-------ccCCCC
Q 024019 232 CSECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFTY-------LRCGIE 273 (274)
Q Consensus 232 ~~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~~-------~~~~~~ 273 (274)
..+|+||++.|.+ ...+||- .||.+|+..|+.. ...||.
T Consensus 12 ~~~C~IC~~~~~~---p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~ 58 (79)
T 2egp_A 12 EVTCPICLELLTE---PLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPV 58 (79)
T ss_dssp CCEETTTTEECSS---CCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSS
T ss_pred CCCCcCCCcccCC---eeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCC
Confidence 4789999999976 3458966 9999999999987 567774
No 28
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=96.98 E-value=0.00012 Score=52.52 Aligned_cols=37 Identities=30% Similarity=0.316 Sum_probs=29.6
Q ss_pred cccccccccccccceeeecccC------cCCcCCccccccc--ccCCC
Q 024019 233 SECPICLEEFHVGNEVKISFLS------IFYSSCSVSDFTY--LRCGI 272 (274)
Q Consensus 233 ~eCsICLedFe~GEevR~LPcC------~FH~~CI~~w~~~--~~~~~ 272 (274)
..|.||+++ .++++ .+||. .||.+|+..|+.. ++.||
T Consensus 7 ~~CrIC~~~--~~~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~ 51 (60)
T 1vyx_A 7 PVCWICNEE--LGNER-FRACGCTGELENVHRSCLSTWLTISRNTACQ 51 (60)
T ss_dssp CEETTTTEE--CSCCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCT
T ss_pred CEeEEeecC--CCCce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccC
Confidence 689999997 45554 69963 7999999999975 66676
No 29
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.98 E-value=0.00011 Score=53.34 Aligned_cols=39 Identities=21% Similarity=0.320 Sum_probs=32.9
Q ss_pred CcccccccccccccceeeecccC-cCCcCCcccccccccCCCC
Q 024019 232 CSECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFTYLRCGIE 273 (274)
Q Consensus 232 ~~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~~~~~~~~ 273 (274)
..+|+||++.|.+ ...+||- .||.+||..|++....||.
T Consensus 15 ~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~CP~ 54 (81)
T 2csy_A 15 PFRCFICRQAFQN---PVVTKCRHYFCESCALEHFRATPRCYI 54 (81)
T ss_dssp CSBCSSSCSBCCS---EEECTTSCEEEHHHHHHHHHHCSBCSS
T ss_pred CCCCcCCCchhcC---eeEccCCCHhHHHHHHHHHHCCCcCCC
Confidence 3689999999966 3358866 9999999999998888884
No 30
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.97 E-value=0.00018 Score=50.71 Aligned_cols=39 Identities=18% Similarity=0.079 Sum_probs=31.3
Q ss_pred CcccccccccccccceeeecccC-cCCcCCcccccc---cccCCCC
Q 024019 232 CSECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFT---YLRCGIE 273 (274)
Q Consensus 232 ~~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~---~~~~~~~ 273 (274)
..+|+||++.|++ ...+||- .||.+|+..|++ ..+.||.
T Consensus 20 ~~~C~IC~~~~~~---~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~ 62 (73)
T 2ysl_A 20 EVICPICLDILQK---PVTIDCGHNFCLKCITQIGETSCGFFKCPL 62 (73)
T ss_dssp CCBCTTTCSBCSS---EEECTTCCEEEHHHHHHHCSSSCSCCCCSS
T ss_pred CCEeccCCcccCC---eEEcCCCChhhHHHHHHHHHcCCCCCCCCC
Confidence 4789999999985 4456866 999999999997 4557773
No 31
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=96.92 E-value=0.00013 Score=58.47 Aligned_cols=38 Identities=21% Similarity=0.094 Sum_probs=33.5
Q ss_pred cccccccccccccceeeecccC-cCCcCCcccccccccCCCC
Q 024019 233 SECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFTYLRCGIE 273 (274)
Q Consensus 233 ~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~~~~~~~~ 273 (274)
.+|+||++.|.+ ...+||. .||.+||..|+.....||.
T Consensus 54 ~~C~iC~~~~~~---~~~~~CgH~fc~~Ci~~~~~~~~~CP~ 92 (138)
T 4ayc_A 54 LQCIICSEYFIE---AVTLNCAHSFCSYCINEWMKRKIECPI 92 (138)
T ss_dssp SBCTTTCSBCSS---EEEETTSCEEEHHHHHHHTTTCSBCTT
T ss_pred CCCcccCcccCC---ceECCCCCCccHHHHHHHHHcCCcCCC
Confidence 579999999976 4578977 9999999999999999984
No 32
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.89 E-value=0.00024 Score=49.70 Aligned_cols=39 Identities=13% Similarity=0.094 Sum_probs=31.3
Q ss_pred CcccccccccccccceeeecccC-cCCcCCccccc-ccccCCCC
Q 024019 232 CSECPICLEEFHVGNEVKISFLS-IFYSSCSVSDF-TYLRCGIE 273 (274)
Q Consensus 232 ~~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~-~~~~~~~~ 273 (274)
..+|+||++.+++.- .+||- .||.+|+..|+ ..+..||.
T Consensus 15 ~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~~CP~ 55 (66)
T 2ecy_A 15 KYKCEKCHLVLCSPK---QTECGHRFCESCMAALLSSSSPKCTA 55 (66)
T ss_dssp CEECTTTCCEESSCC---CCSSSCCCCHHHHHHHHTTSSCCCTT
T ss_pred CCCCCCCChHhcCee---ECCCCCHHHHHHHHHHHHhCcCCCCC
Confidence 478999999997643 37866 99999999999 45667874
No 33
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.85 E-value=0.00035 Score=49.88 Aligned_cols=39 Identities=21% Similarity=0.252 Sum_probs=32.2
Q ss_pred CcccccccccccccceeeecccC-cCCcCCccccccc------ccCCCC
Q 024019 232 CSECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFTY------LRCGIE 273 (274)
Q Consensus 232 ~~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~~------~~~~~~ 273 (274)
..+|+||++.|++ ...+||- .||.+|+..|+.. ...||.
T Consensus 19 ~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~ 64 (85)
T 2ecv_A 19 EVTCPICLELLTQ---PLSLDCGHSFCQACLTANHKKSMLDKGESSCPV 64 (85)
T ss_dssp CCCCTTTCSCCSS---CBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTT
T ss_pred CCCCCCCCcccCC---ceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCC
Confidence 4789999999975 4567866 9999999999987 677774
No 34
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=96.75 E-value=0.00023 Score=53.56 Aligned_cols=39 Identities=26% Similarity=0.403 Sum_probs=32.4
Q ss_pred cccccccccccccceeeecccC-cCCcCCcccccccccCCCC
Q 024019 233 SECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFTYLRCGIE 273 (274)
Q Consensus 233 ~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~~~~~~~~ 273 (274)
.+|+||++.|.+ .+..+||. .||.+|+..|+.....||.
T Consensus 23 ~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~~~~~~~~CP~ 62 (99)
T 2y43_A 23 LRCGICFEYFNI--AMIIPQCSHNYCSLCIRKFLSYKTQCPT 62 (99)
T ss_dssp TBCTTTCSBCSS--EEECTTTCCEEEHHHHHHHHTTCCBCTT
T ss_pred CCcccCChhhCC--cCEECCCCCHhhHHHHHHHHHCCCCCCC
Confidence 689999999986 33334766 9999999999999888984
No 35
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.75 E-value=0.00022 Score=54.01 Aligned_cols=38 Identities=26% Similarity=0.353 Sum_probs=30.9
Q ss_pred cccccccccccccceeeecccC-cCCcCCccccccccc---CCCC
Q 024019 233 SECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFTYLR---CGIE 273 (274)
Q Consensus 233 ~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~~~~---~~~~ 273 (274)
.+|+||++.|++. ..+||- .||.+|+..|+.... .||.
T Consensus 22 ~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~ 63 (112)
T 1jm7_A 22 LECPICLELIKEP---VSTKCDHIFCKFCMLKLLNQKKGPSQCPL 63 (112)
T ss_dssp TSCSSSCCCCSSC---CBCTTSCCCCSHHHHHHHHSSSSSCCCTT
T ss_pred CCCcccChhhcCe---EECCCCCHHHHHHHHHHHHhCCCCCCCcC
Confidence 5899999999753 347866 999999999998754 7774
No 36
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=96.72 E-value=0.00035 Score=49.92 Aligned_cols=39 Identities=21% Similarity=0.292 Sum_probs=32.1
Q ss_pred CcccccccccccccceeeecccC-cCCcCCccccccc------ccCCCC
Q 024019 232 CSECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFTY------LRCGIE 273 (274)
Q Consensus 232 ~~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~~------~~~~~~ 273 (274)
..+|+||++.|.+. ..+||- .||.+|+..|++. ...||.
T Consensus 19 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~ 64 (85)
T 2ecw_A 19 EVTCPICLELLKEP---VSADCNHSFCRACITLNYESNRNTDGKGNCPV 64 (85)
T ss_dssp TTSCTTTCSCCSSC---EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTT
T ss_pred CCCCcCCChhhCcc---eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCC
Confidence 36899999999764 368966 9999999999988 667774
No 37
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=96.66 E-value=0.00029 Score=53.86 Aligned_cols=40 Identities=18% Similarity=0.140 Sum_probs=33.6
Q ss_pred CcccccccccccccceeeecccC-cCCcCCcccccccccCCCC
Q 024019 232 CSECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFTYLRCGIE 273 (274)
Q Consensus 232 ~~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~~~~~~~~ 273 (274)
..+|+||++.|.+ .+..+||- .||..||..|+.....||.
T Consensus 15 ~~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~~~~~~~~CP~ 55 (108)
T 2ckl_A 15 HLMCVLCGGYFID--ATTIIECLHSFCKTCIVRYLETSKYCPI 55 (108)
T ss_dssp GTBCTTTSSBCSS--EEEETTTCCEEEHHHHHHHHTSCSBCTT
T ss_pred cCCCccCChHHhC--cCEeCCCCChhhHHHHHHHHHhCCcCcC
Confidence 3789999999975 45545866 9999999999999999984
No 38
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=96.54 E-value=0.00029 Score=53.72 Aligned_cols=39 Identities=21% Similarity=0.174 Sum_probs=32.6
Q ss_pred cccccccccccccceeeecccC-cCCcCCcccccccc-cCCCC
Q 024019 233 SECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFTYL-RCGIE 273 (274)
Q Consensus 233 ~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~~~-~~~~~ 273 (274)
.+|+||++.|.+ .+..+||- .||.+||..|+... +.||.
T Consensus 23 ~~C~IC~~~~~~--p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~ 63 (100)
T 3lrq_A 23 FRCFICMEKLRD--ARLCPHCSKLCCFSCIRRWLTEQRAQCPH 63 (100)
T ss_dssp TBCTTTCSBCSS--EEECTTTCCEEEHHHHHHHHHHTCSBCTT
T ss_pred CCCccCCccccC--ccccCCCCChhhHHHHHHHHHHCcCCCCC
Confidence 689999999974 44448866 99999999999988 68884
No 39
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=96.50 E-value=0.00036 Score=57.03 Aligned_cols=39 Identities=18% Similarity=0.350 Sum_probs=32.6
Q ss_pred cccccccccccccceeeecccC-cCCcCCccccccc-ccCCCC
Q 024019 233 SECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFTY-LRCGIE 273 (274)
Q Consensus 233 ~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~~-~~~~~~ 273 (274)
..|+||++.|.+ .+..+||- .||.+||..|+.. ...||.
T Consensus 55 ~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~ 95 (165)
T 2ckl_B 55 LMCPICLDMLKN--TMTTKECLHRFCADCIITALRSGNKECPT 95 (165)
T ss_dssp HBCTTTSSBCSS--EEEETTTCCEEEHHHHHHHHHTTCCBCTT
T ss_pred CCCcccChHhhC--cCEeCCCCChhHHHHHHHHHHhCcCCCCC
Confidence 589999999986 55556866 9999999999987 777884
No 40
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=96.32 E-value=0.0011 Score=63.66 Aligned_cols=50 Identities=20% Similarity=0.224 Sum_probs=34.4
Q ss_pred cCCceeeec------CCCCCcccccccccccccceeee----cccC--cCCcCCcccccccc
Q 024019 219 ELPKFRLKA------VPTDCSECPICLEEFHVGNEVKI----SFLS--IFYSSCSVSDFTYL 268 (274)
Q Consensus 219 aLP~~~~t~------~~~d~~eCsICLedFe~GEevR~----LPcC--~FH~~CI~~w~~~~ 268 (274)
++|...-++ +..+..+|+||++.+.+++++-. .|.| .||..|+..||.-.
T Consensus 289 ~fP~p~~~~~~~~~e~ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~ 350 (381)
T 3k1l_B 289 YFPMPDWSDGPKLDEEDNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTL 350 (381)
T ss_dssp SCCCCCGGGCCSCTTCCCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHH
T ss_pred ccCCCcccccccccccccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhC
Confidence 456655443 22244799999999998554432 2345 99999999999643
No 41
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=96.13 E-value=0.0011 Score=47.42 Aligned_cols=39 Identities=18% Similarity=0.110 Sum_probs=32.0
Q ss_pred CcccccccccccccceeeecccC-cCCcCCccccccc-ccCCCC
Q 024019 232 CSECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFTY-LRCGIE 273 (274)
Q Consensus 232 ~~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~~-~~~~~~ 273 (274)
...|+||++.|++- ..+||- .|+.+||..|+.. .+.||.
T Consensus 8 ~~~C~IC~~~~~~P---v~~~CgH~fc~~Ci~~~~~~~~~~CP~ 48 (78)
T 1t1h_A 8 YFRCPISLELMKDP---VIVSTGQTYERSSIQKWLDAGHKTCPK 48 (78)
T ss_dssp SSSCTTTSCCCSSE---EEETTTEEEEHHHHHHHHTTTCCBCTT
T ss_pred cCCCCCccccccCC---EEcCCCCeecHHHHHHHHHHCcCCCCC
Confidence 37899999999763 346866 9999999999987 777874
No 42
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=96.08 E-value=0.00087 Score=49.43 Aligned_cols=39 Identities=10% Similarity=0.099 Sum_probs=31.3
Q ss_pred CcccccccccccccceeeecccC--cCCcCCcccccccc--cCCCC
Q 024019 232 CSECPICLEEFHVGNEVKISFLS--IFYSSCSVSDFTYL--RCGIE 273 (274)
Q Consensus 232 ~~eCsICLedFe~GEevR~LPcC--~FH~~CI~~w~~~~--~~~~~ 273 (274)
...|+||++.|.+ -..+|+| .|+.+||..|+... ..||.
T Consensus 13 ~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~ 55 (92)
T 3ztg_A 13 ELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPT 55 (92)
T ss_dssp TTEETTTTEECSS---CEECTTTCCEECHHHHHHHHHHCTTCCCTT
T ss_pred CCCCCCCChhhcC---ceECCCCCCHHHHHHHHHHHHhcCCCcCcC
Confidence 4789999999985 3478956 99999999999654 47774
No 43
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=95.99 E-value=0.0015 Score=50.21 Aligned_cols=38 Identities=18% Similarity=0.228 Sum_probs=31.7
Q ss_pred cccccccccccccceeeecccC-cCCcCCccccccc-ccCCCC
Q 024019 233 SECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFTY-LRCGIE 273 (274)
Q Consensus 233 ~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~~-~~~~~~ 273 (274)
.+|+||++.|.+ -..+||. .||..|+..|+.. ...||.
T Consensus 16 ~~C~iC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~ 55 (115)
T 3l11_A 16 CQCGICMEILVE---PVTLPCNHTLCKPCFQSTVEKASLCCPF 55 (115)
T ss_dssp HBCTTTCSBCSS---CEECTTSCEECHHHHCCCCCTTTSBCTT
T ss_pred CCCccCCcccCc---eeEcCCCCHHhHHHHHHHHhHCcCCCCC
Confidence 689999999975 4567977 9999999999977 667874
No 44
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=95.94 E-value=0.0011 Score=46.16 Aligned_cols=42 Identities=17% Similarity=0.201 Sum_probs=31.0
Q ss_pred Ccccccccc-ccccccee-eecccC-cCCcCCcccccccc-cCCCC
Q 024019 232 CSECPICLE-EFHVGNEV-KISFLS-IFYSSCSVSDFTYL-RCGIE 273 (274)
Q Consensus 232 ~~eCsICLe-dFe~GEev-R~LPcC-~FH~~CI~~w~~~~-~~~~~ 273 (274)
..+|+||++ .|...... ..+||- .||.+|+..|+..+ ..||.
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~ 48 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPE 48 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTT
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCC
Confidence 368999999 77765443 346866 99999999997543 45773
No 45
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=95.92 E-value=0.0057 Score=42.02 Aligned_cols=36 Identities=17% Similarity=0.130 Sum_probs=28.7
Q ss_pred CCcccccccccccccceeeecccC-cCCcCCcccccccccCCC
Q 024019 231 DCSECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFTYLRCGI 272 (274)
Q Consensus 231 d~~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~~~~~~~ 272 (274)
+..+|+||++.|.+ -+.|||- .|+..|+..| ...||
T Consensus 5 ~~~~C~IC~~~~~~---p~~l~CgH~fC~~Ci~~~---~~~CP 41 (56)
T 1bor_A 5 QFLRCQQCQAEAKC---PKLLPCLHTLCSGCLEAS---GMQCP 41 (56)
T ss_dssp CCSSCSSSCSSCBC---CSCSTTSCCSBTTTCSSS---SSSCS
T ss_pred cCCCceEeCCccCC---eEEcCCCCcccHHHHccC---CCCCC
Confidence 34789999999985 4789966 9999999883 45565
No 46
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=95.50 E-value=0.0015 Score=50.83 Aligned_cols=39 Identities=21% Similarity=0.300 Sum_probs=31.8
Q ss_pred CcccccccccccccceeeecccC-cCCcCCccccccccc-CCCC
Q 024019 232 CSECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFTYLR-CGIE 273 (274)
Q Consensus 232 ~~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~~~~-~~~~ 273 (274)
..+|+||++.+.+. ..+||- .|+.+||..|+.... .||.
T Consensus 18 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~ 58 (118)
T 3hct_A 18 KYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPV 58 (118)
T ss_dssp GGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTT
T ss_pred CCCCCcCChhhcCe---EECCcCChhhHHHHHHHHhhCCCCCCC
Confidence 47899999999864 457866 999999999998765 7773
No 47
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=95.39 E-value=0.002 Score=50.28 Aligned_cols=38 Identities=13% Similarity=0.126 Sum_probs=30.7
Q ss_pred cccccccccccccceeeecccC-cCCcCCccccccc-ccCCCC
Q 024019 233 SECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFTY-LRCGIE 273 (274)
Q Consensus 233 ~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~~-~~~~~~ 273 (274)
..|+||++.|.+ -..+||- .||.+||..|+.. .+.||.
T Consensus 53 ~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~ 92 (124)
T 3fl2_A 53 FQCICCQELVFR---PITTVCQHNVCKDCLDRSFRAQVFSCPA 92 (124)
T ss_dssp TBCTTTSSBCSS---EEECTTSCEEEHHHHHHHHHTTCCBCTT
T ss_pred CCCCcCChHHcC---cEEeeCCCcccHHHHHHHHhHCcCCCCC
Confidence 689999999985 3457866 9999999999974 447874
No 48
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=95.15 E-value=0.012 Score=45.69 Aligned_cols=36 Identities=17% Similarity=0.144 Sum_probs=29.5
Q ss_pred cccccccccccccceeeec-ccC-cCCcCCcccccccccCCCC
Q 024019 233 SECPICLEEFHVGNEVKIS-FLS-IFYSSCSVSDFTYLRCGIE 273 (274)
Q Consensus 233 ~eCsICLedFe~GEevR~L-PcC-~FH~~CI~~w~~~~~~~~~ 273 (274)
..|+||++.|.+ -..+ ||- .|+..||..|++ ..||.
T Consensus 23 ~~C~IC~~~~~~---pv~~~~CgH~fC~~Ci~~~~~--~~CP~ 60 (117)
T 1jm7_B 23 LRCSRCTNILRE---PVCLGGCEHIFCSNCVSDCIG--TGCPV 60 (117)
T ss_dssp TSCSSSCSCCSS---CBCCCSSSCCBCTTTGGGGTT--TBCSS
T ss_pred CCCCCCChHhhC---ccEeCCCCCHHHHHHHHHHhc--CCCcC
Confidence 689999999975 3456 766 999999999998 66774
No 49
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=94.97 E-value=0.0027 Score=48.84 Aligned_cols=38 Identities=13% Similarity=0.157 Sum_probs=31.5
Q ss_pred cccccccccccccceeeecccC-cCCcCCccccccc-ccCCCC
Q 024019 233 SECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFTY-LRCGIE 273 (274)
Q Consensus 233 ~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~~-~~~~~~ 273 (274)
..|+||++.+.+ . ..+||- .||.+||..|++. .+.||.
T Consensus 24 ~~C~IC~~~~~~--p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~ 63 (116)
T 1rmd_A 24 ISCQICEHILAD--P-VETSCKHLFCRICILRCLKVMGSYCPS 63 (116)
T ss_dssp TBCTTTCSBCSS--E-EECTTSCEEEHHHHHHHHHHTCSBCTT
T ss_pred CCCCCCCcHhcC--c-EEcCCCCcccHHHHHHHHhHCcCcCCC
Confidence 689999999975 2 347866 9999999999987 778874
No 50
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=94.97 E-value=0.0048 Score=59.05 Aligned_cols=38 Identities=26% Similarity=0.190 Sum_probs=32.8
Q ss_pred cccccccccccccceeeecccC-cCCcCCcccccc-cccCCCC
Q 024019 233 SECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFT-YLRCGIE 273 (274)
Q Consensus 233 ~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~-~~~~~~~ 273 (274)
.+|+||++.+++ ...+||- .||.+|+..|+. ..+.||.
T Consensus 333 ~~C~ICle~~~~---pv~lpCGH~FC~~Ci~~wl~~~~~~CP~ 372 (389)
T 2y1n_A 333 QLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPF 372 (389)
T ss_dssp SBCTTTSSSBCC---EEEETTCCEECHHHHHHHHHHTCSBCTT
T ss_pred CCCCccCcCCCC---eEEeCCCChhhHHHHHHHHhcCCCCCCC
Confidence 589999999865 6778977 999999999998 6888884
No 51
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=94.61 E-value=0.0042 Score=51.00 Aligned_cols=38 Identities=13% Similarity=0.026 Sum_probs=31.1
Q ss_pred cccccccccccccceeeecccC-cCCcCCccccccccc-CCCC
Q 024019 233 SECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFTYLR-CGIE 273 (274)
Q Consensus 233 ~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~~~~-~~~~ 273 (274)
..|+||++.|.+- ..+||- .|+..||..|+.... .||.
T Consensus 79 ~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~ 118 (150)
T 1z6u_A 79 FMCVCCQELVYQP---VTTECFHNVCKDCLQRSFKAQVFSCPA 118 (150)
T ss_dssp TBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTT
T ss_pred CEeecCChhhcCC---EEcCCCCchhHHHHHHHHHhCCCcCCC
Confidence 6899999999763 348977 999999999998754 6874
No 52
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=93.37 E-value=0.022 Score=42.30 Aligned_cols=42 Identities=17% Similarity=0.242 Sum_probs=29.8
Q ss_pred CCcccccccccccccceeeecc--cC-cCCcCCccccc-ccccCCCC
Q 024019 231 DCSECPICLEEFHVGNEVKISF--LS-IFYSSCSVSDF-TYLRCGIE 273 (274)
Q Consensus 231 d~~eCsICLedFe~GEevR~LP--cC-~FH~~CI~~w~-~~~~~~~~ 273 (274)
+..+|+||++.+...| .+.+| |- .|+..|+.... +.+..||.
T Consensus 10 ~~~~CpICle~~~~~d-~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~ 55 (78)
T 1e4u_A 10 DPVECPLCMEPLEIDD-INFFPCTCGYQICRFCWHRIRTDENGLCPA 55 (78)
T ss_dssp CCCBCTTTCCBCCTTT-TTCCSSTTSCCCCHHHHHHHTTSSCSBCTT
T ss_pred cCCcCCccCccCcccc-ccccccCCCCCcCHHHHHHHHhcCCCCCCC
Confidence 3478999999886544 45666 44 99999998765 33556764
No 53
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=93.14 E-value=0.0064 Score=49.53 Aligned_cols=39 Identities=13% Similarity=0.037 Sum_probs=31.1
Q ss_pred CCcccccccccccccceeeecccC-cCCcCCccccccccc-CCC
Q 024019 231 DCSECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFTYLR-CGI 272 (274)
Q Consensus 231 d~~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~~~~-~~~ 272 (274)
+..+|+||++.+++- .++||- .|+..||..|+.... .||
T Consensus 30 ~~~~C~IC~~~~~~p---v~~~CgH~FC~~Ci~~~~~~~~~~CP 70 (141)
T 3knv_A 30 AKYLCSACRNVLRRP---FQAQCGHRYCSFCLASILSSGPQNCA 70 (141)
T ss_dssp GGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHGGGSCEECH
T ss_pred cCcCCCCCChhhcCc---EECCCCCccCHHHHHHHHhcCCCCCC
Confidence 347999999999874 347866 999999999997553 665
No 54
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=92.91 E-value=0.018 Score=43.03 Aligned_cols=35 Identities=29% Similarity=0.524 Sum_probs=29.5
Q ss_pred cccccccccccccceeeecccC-cCCcCCccccccc
Q 024019 233 SECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFTY 267 (274)
Q Consensus 233 ~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~~ 267 (274)
.+|+||+++|...+.++..||- .|..+|+...++.
T Consensus 6 ~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~ 41 (94)
T 1wim_A 6 SGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVEL 41 (94)
T ss_dssp CCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHH
T ss_pred cCCcccCcccccccceEcCCCCCcccHHHHHHHHHH
Confidence 6899999999988877767866 9999999887763
No 55
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=90.12 E-value=0.041 Score=44.90 Aligned_cols=40 Identities=20% Similarity=0.297 Sum_probs=31.4
Q ss_pred CCcccccccccccccceeeecccC-cCCcCCccccccccc-CCCC
Q 024019 231 DCSECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFTYLR-CGIE 273 (274)
Q Consensus 231 d~~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~~~~-~~~~ 273 (274)
+...|+||++.|.+- ..+||- .|..+|+..|+.... .||.
T Consensus 17 ~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~ 58 (170)
T 3hcs_A 17 SKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPV 58 (170)
T ss_dssp GGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTT
T ss_pred CCCCCCCCChhhcCc---EECCCCCHHHHHHHHHHHHhCCCCCCC
Confidence 347999999999863 347866 999999999997643 6763
No 56
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=89.80 E-value=0.089 Score=37.86 Aligned_cols=33 Identities=12% Similarity=0.229 Sum_probs=27.0
Q ss_pred cccccccccccccceeeecccC-c-CCcCCcccccccccCCC
Q 024019 233 SECPICLEEFHVGNEVKISFLS-I-FYSSCSVSDFTYLRCGI 272 (274)
Q Consensus 233 ~eCsICLedFe~GEevR~LPcC-~-FH~~CI~~w~~~~~~~~ 272 (274)
.+|+||++.+.+ ...+||- . |..+|+..| +.||
T Consensus 25 ~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~----~~CP 59 (74)
T 4ic3_A 25 KLCKICMDRNIA---IVFVPCGHLVTCKQCAEAV----DKCP 59 (74)
T ss_dssp TBCTTTSSSBCC---EEEETTCCBCCCHHHHTTC----SBCT
T ss_pred CCCCCCCCCCCC---EEEcCCCChhHHHHhhhcC----ccCC
Confidence 589999998875 5578977 6 999999988 5666
No 57
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=89.09 E-value=0.17 Score=42.90 Aligned_cols=39 Identities=8% Similarity=-0.084 Sum_probs=31.0
Q ss_pred CcccccccccccccceeeecccC-cCCcCCccccccccc-CCCC
Q 024019 232 CSECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFTYLR-CGIE 273 (274)
Q Consensus 232 ~~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~~~~-~~~~ 273 (274)
...|+||++-|++ .| .+||- .|-.+||..|+..+. .||.
T Consensus 208 ~~~c~i~~~~~~d--Pv-~~~~gh~f~~~~i~~~~~~~~~~cP~ 248 (281)
T 2c2l_A 208 YLCGKISFELMRE--PC-ITPSGITYDRKDIEEHLQRVGHFNPV 248 (281)
T ss_dssp TTBCTTTCSBCSS--EE-ECSSCCEEETTHHHHHHHHTCSSCTT
T ss_pred ccCCcCcCCHhcC--Ce-ECCCCCEECHHHHHHHHHHCCCCCcC
Confidence 4789999999986 33 57855 999999999998643 4885
No 58
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.98 E-value=0.072 Score=40.12 Aligned_cols=39 Identities=18% Similarity=0.129 Sum_probs=30.7
Q ss_pred Ccccccccccccccceeeecc-cC-cCCcCCcccccccc------cCCCC
Q 024019 232 CSECPICLEEFHVGNEVKISF-LS-IFYSSCSVSDFTYL------RCGIE 273 (274)
Q Consensus 232 ~~eCsICLedFe~GEevR~LP-cC-~FH~~CI~~w~~~~------~~~~~ 273 (274)
...|+||++-|++ -| .+| |- .|-.+||..|+..+ ..||.
T Consensus 7 ~~~CPI~~~~~~d--PV-~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~ 53 (94)
T 2yu4_A 7 GFTCPITKEEMKK--PV-KNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQ 53 (94)
T ss_dssp CCBCTTTCSBCSS--EE-EESSSCCEEEHHHHHHHHHHHHTTTCCBCCCS
T ss_pred EeECcCcCchhcC--CE-EcCCCCCeecHHHHHHHHHHccCcCCCCCCCc
Confidence 3689999999985 44 466 44 99999999999875 37774
No 59
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=84.09 E-value=0.23 Score=38.20 Aligned_cols=38 Identities=8% Similarity=-0.214 Sum_probs=32.0
Q ss_pred cccccccccccccceeeecccC-cCCcCCcccccccccCCCC
Q 024019 233 SECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFTYLRCGIE 273 (274)
Q Consensus 233 ~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~~~~~~~~ 273 (274)
..|+||++-|++ =-.+||- .|-.+||..|+..+..||.
T Consensus 30 ~~CpI~~~~m~d---PV~~~cGhtf~r~~I~~~l~~~~~cP~ 68 (100)
T 2kre_A 30 FRDPLMDTLMTD---PVRLPSGTIMDRSIILRHLLNSPTDPF 68 (100)
T ss_dssp TBCTTTCSBCSS---EEEETTTEEEEHHHHHHHTTSCSBCSS
T ss_pred hCCcCccCcccC---CeECCCCCEEchHHHHHHHHcCCCCCC
Confidence 689999999986 2357855 9999999999998888884
No 60
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=83.95 E-value=0.24 Score=37.94 Aligned_cols=38 Identities=13% Similarity=-0.167 Sum_probs=32.3
Q ss_pred cccccccccccccceeeecccC--cCCcCCcccccccccCCCC
Q 024019 233 SECPICLEEFHVGNEVKISFLS--IFYSSCSVSDFTYLRCGIE 273 (274)
Q Consensus 233 ~eCsICLedFe~GEevR~LPcC--~FH~~CI~~w~~~~~~~~~ 273 (274)
..|+||++-|++ -| .+||. .|-..||..|+..+..||.
T Consensus 23 ~~CpI~~~~m~d--PV-~~~cG~htf~r~cI~~~l~~~~~cP~ 62 (98)
T 1wgm_A 23 FLDPIMSTLMCD--PV-VLPSSRVTVDRSTIARHLLSDQTDPF 62 (98)
T ss_dssp TBCTTTCSBCSS--EE-ECTTTCCEEEHHHHHHHTTTSCBCTT
T ss_pred cCCcCccccccC--Ce-ECCCCCeEECHHHHHHHHHhCCCCCC
Confidence 689999999986 33 47877 8999999999998888885
No 61
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=83.07 E-value=0.2 Score=37.17 Aligned_cols=38 Identities=5% Similarity=-0.222 Sum_probs=32.0
Q ss_pred cccccccccccccceeeecccC-cCCcCCcccccccccCCCC
Q 024019 233 SECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFTYLRCGIE 273 (274)
Q Consensus 233 ~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~~~~~~~~ 273 (274)
..|+||++-|++ =-.+||- .|-.+||..|+..+..||.
T Consensus 15 ~~CpI~~~~m~d---PV~~~cGhtf~r~~I~~~l~~~~~cP~ 53 (85)
T 2kr4_A 15 FRDPLMDTLMTD---PVRLPSGTVMDRSIILRHLLNSPTDPF 53 (85)
T ss_dssp TBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHCSBCTT
T ss_pred eECcccCchhcC---CeECCCCCEECHHHHHHHHhcCCCCCC
Confidence 689999999986 2357855 9999999999998888884
No 62
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=82.55 E-value=0.19 Score=35.43 Aligned_cols=39 Identities=13% Similarity=0.091 Sum_probs=29.6
Q ss_pred cccccccccccccceeeecccC-c-CCcCCcccccccccCCC
Q 024019 233 SECPICLEEFHVGNEVKISFLS-I-FYSSCSVSDFTYLRCGI 272 (274)
Q Consensus 233 ~eCsICLedFe~GEevR~LPcC-~-FH~~CI~~w~~~~~~~~ 272 (274)
.+|+||++++.+.- +..+||- . |=.+|+..|.+.+..||
T Consensus 9 ~~C~IC~~~~~~~~-~~~~pCgH~~~C~~C~~~~~~~~~~CP 49 (64)
T 2vje_A 9 EPCVICQGRPKNGC-IVHGKTGHLMACFTCAKKLKKRNKPCP 49 (64)
T ss_dssp SCCTTTSSSCSCEE-EEETTEEEEEECHHHHHHHHHTTCCCT
T ss_pred CCCCcCCCCCCCEE-EECCCCCChhhHHHHHHHHHHcCCcCC
Confidence 68999999887641 1234966 5 66899999998888887
No 63
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=82.49 E-value=0.63 Score=43.36 Aligned_cols=35 Identities=17% Similarity=0.234 Sum_probs=28.5
Q ss_pred CcccccccccccccceeeecccC-c-CCcCCcccccccccCCCC
Q 024019 232 CSECPICLEEFHVGNEVKISFLS-I-FYSSCSVSDFTYLRCGIE 273 (274)
Q Consensus 232 ~~eCsICLedFe~GEevR~LPcC-~-FH~~CI~~w~~~~~~~~~ 273 (274)
...|+||++.+.+ ...+||- . |...|+..| +.||-
T Consensus 295 ~~~C~IC~~~~~~---~v~lpCgH~~fC~~C~~~~----~~CP~ 331 (345)
T 3t6p_A 295 ERTCKVCMDKEVS---VVFIPCGHLVVCQECAPSL----RKCPI 331 (345)
T ss_dssp TCBCTTTSSSBCC---EEEETTCCEEECTTTGGGC----SBCTT
T ss_pred CCCCCccCCcCCc---eEEcCCCChhHhHHHHhcC----CcCCC
Confidence 3689999999875 5677977 6 999999988 67773
No 64
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.36 E-value=0.28 Score=35.11 Aligned_cols=33 Identities=12% Similarity=0.276 Sum_probs=25.5
Q ss_pred cccccccccccccceeeecccC-c-CCcCCcccccccccCCC
Q 024019 233 SECPICLEEFHVGNEVKISFLS-I-FYSSCSVSDFTYLRCGI 272 (274)
Q Consensus 233 ~eCsICLedFe~GEevR~LPcC-~-FH~~CI~~w~~~~~~~~ 272 (274)
.+|+||++.+.+ ...+||- . |..+|+.. .+.||
T Consensus 26 ~~C~IC~~~~~~---~~~~pCgH~~~C~~C~~~----~~~CP 60 (75)
T 2ecg_A 26 KLCKICMDRNIA---IVFVPCGHLVTCKQCAEA----VDKCP 60 (75)
T ss_dssp HSCSSSCSSCCC---BCCSSSCCCCBCHHHHHH----CSBCT
T ss_pred CCCCcCCCCCCC---EEEecCCCHHHHHHHhhC----CCCCc
Confidence 589999998865 5678977 6 99999953 35666
No 65
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.12 E-value=1 Score=32.22 Aligned_cols=35 Identities=9% Similarity=0.170 Sum_probs=26.8
Q ss_pred CCcccccccccccccceeeecccC-c-CCcCCcccccccccCCC
Q 024019 231 DCSECPICLEEFHVGNEVKISFLS-I-FYSSCSVSDFTYLRCGI 272 (274)
Q Consensus 231 d~~eCsICLedFe~GEevR~LPcC-~-FH~~CI~~w~~~~~~~~ 272 (274)
+..+|+||++...+ +..|||- . |-.+|+.. .+.||
T Consensus 14 ~~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~----~~~CP 50 (68)
T 2ea5_A 14 NSKDCVVCQNGTVN---WVLLPCRHTCLCDGCVKY----FQQCP 50 (68)
T ss_dssp CSSCCSSSSSSCCC---CEETTTTBCCSCTTHHHH----CSSCT
T ss_pred CCCCCCCcCcCCCC---EEEECCCChhhhHHHHhc----CCCCC
Confidence 34789999998765 7789976 5 99999872 46666
No 66
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=72.68 E-value=2.2 Score=30.05 Aligned_cols=35 Identities=26% Similarity=0.450 Sum_probs=23.6
Q ss_pred Ccccccccccccc-cceeeecccC--cCCcCCcccccc
Q 024019 232 CSECPICLEEFHV-GNEVKISFLS--IFYSSCSVSDFT 266 (274)
Q Consensus 232 ~~eCsICLedFe~-GEevR~LPcC--~FH~~CI~~w~~ 266 (274)
...|.||.+...+ ++.+..=.-| .||..|..|-++
T Consensus 6 ~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~ 43 (66)
T 2yt5_A 6 SGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHID 43 (66)
T ss_dssp CCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCC
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCccc
Confidence 3689999876532 3333333345 999999998665
No 67
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=71.27 E-value=0.67 Score=39.79 Aligned_cols=39 Identities=5% Similarity=-0.124 Sum_probs=31.0
Q ss_pred CcccccccccccccceeeecccC-cCCcCCcccccccc-cCCCC
Q 024019 232 CSECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFTYL-RCGIE 273 (274)
Q Consensus 232 ~~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~~~-~~~~~ 273 (274)
...||||++-+++ .|. +||- .|=.+||..|+..+ +.||.
T Consensus 106 ~f~CPI~~elm~D--PV~-~~~Ghtfer~~I~~~l~~~~~tcP~ 146 (179)
T 2f42_A 106 YLCGKISFELMRE--PCI-TPSGITYDRKDIEEHLQRVGHFDPV 146 (179)
T ss_dssp GGBCTTTCSBCSS--EEE-CTTSCEEEHHHHHHHHHHTCSBCTT
T ss_pred hhcccCccccCCC--CeE-CCCCCEECHHHHHHHHHhCCCCCCC
Confidence 3789999999985 454 4865 99999999999864 46884
No 68
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=70.91 E-value=2.1 Score=29.98 Aligned_cols=33 Identities=18% Similarity=0.246 Sum_probs=23.7
Q ss_pred cccccccccccccceeeecccC--cCCcCCccccc
Q 024019 233 SECPICLEEFHVGNEVKISFLS--IFYSSCSVSDF 265 (274)
Q Consensus 233 ~eCsICLedFe~GEevR~LPcC--~FH~~CI~~w~ 265 (274)
..|++|.+.+.+++.+.+==.| .||..|+..--
T Consensus 7 ~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~ 41 (64)
T 1we9_A 7 GQCGACGESYAADEFWICCDLCEMWFHGKCVKITP 41 (64)
T ss_dssp CCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCT
T ss_pred CCCCCCCCccCCCCCEEEccCCCCCCCccccCcCh
Confidence 5799999999765544433345 99999997543
No 69
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=69.97 E-value=0.61 Score=32.65 Aligned_cols=39 Identities=13% Similarity=0.110 Sum_probs=29.0
Q ss_pred cccccccccccccceeeecccC-c-CCcCCcccccccccCCC
Q 024019 233 SECPICLEEFHVGNEVKISFLS-I-FYSSCSVSDFTYLRCGI 272 (274)
Q Consensus 233 ~eCsICLedFe~GEevR~LPcC-~-FH~~CI~~w~~~~~~~~ 272 (274)
.+|+||++...+.- +.-+||- . |-.+|+..+.+.+..||
T Consensus 8 ~~C~IC~~~~~~~~-~~~~pCgH~~~C~~C~~~~~~~~~~CP 48 (63)
T 2vje_B 8 KPCSLCEKRPRDGN-IIHGRTGHLVTCFHCARRLKKAGASCP 48 (63)
T ss_dssp SBCTTTSSSBSCEE-EEETTEEEEEECHHHHHHHHHTTCBCT
T ss_pred CCCcccCCcCCCeE-EEecCCCCHhHHHHHHHHHHHhCCcCC
Confidence 58999999876532 2224966 4 89999999887777777
No 70
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=68.84 E-value=0.58 Score=33.09 Aligned_cols=38 Identities=16% Similarity=-0.098 Sum_probs=30.5
Q ss_pred cccccccccccccceeeecccC-cCCcCCcccccccccCCC
Q 024019 233 SECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFTYLRCGI 272 (274)
Q Consensus 233 ~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~~~~~~~ 272 (274)
..|+||++-+++ -|..-|+- .|-.+||..|+..+..||
T Consensus 4 ~~CpIs~~~m~d--PV~~~~sG~~yer~~I~~~l~~~~~cP 42 (61)
T 2bay_A 4 MLCAISGKVPRR--PVLSPKSRTIFEKSLLEQYVKDTGNDP 42 (61)
T ss_dssp CCCTTTCSCCSS--EEEETTTTEEEEHHHHHHHHHHHSBCT
T ss_pred EEecCCCCCCCC--CEEeCCCCcEEcHHHHHHHHHhCCCCc
Confidence 469999999984 55443544 999999999998887787
No 71
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=68.53 E-value=1.1 Score=39.73 Aligned_cols=39 Identities=15% Similarity=0.189 Sum_probs=29.9
Q ss_pred CcccccccccccccceeeecccC-cCCcCCcccccccc--cCCC
Q 024019 232 CSECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFTYL--RCGI 272 (274)
Q Consensus 232 ~~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~~~--~~~~ 272 (274)
..+|.+|-+---.|..-.. |- .||..|+..|+... +.||
T Consensus 180 i~~C~iC~~iv~~g~~C~~--C~~~~H~~C~~~~~~~~~~~~CP 221 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCET--CGIRMHLPCVAKYFQSNAEPRCP 221 (238)
T ss_dssp CCBCTTTCSBCSSCEECSS--SCCEECHHHHHHHTTTCSSCBCT
T ss_pred CCcCcchhhHHhCCcccCc--cChHHHHHHHHHHHHhCCCCCCC
Confidence 3689999888888754433 33 99999999999754 3787
No 72
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=68.06 E-value=1.1 Score=41.08 Aligned_cols=39 Identities=13% Similarity=0.134 Sum_probs=31.8
Q ss_pred cccccccccccccceeeecccC-cCCcCCcccccccc--cCCCC
Q 024019 233 SECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFTYL--RCGIE 273 (274)
Q Consensus 233 ~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~~~--~~~~~ 273 (274)
..||||++-|++ -|+...|- .|=.+||..|++.+ ..||.
T Consensus 182 l~CPIcl~~f~D--PVts~~CGHsFcR~cI~~~~~~~~~~~CPv 223 (267)
T 3htk_C 182 LTCPITCKPYEA--PLISRKCNHVFDRDGIQNYLQGYTTRDCPQ 223 (267)
T ss_dssp SBCTTTSSBCSS--EEEESSSCCEEEHHHHHHHSTTCSCEECSG
T ss_pred eECcCccCcccC--CeeeCCCCCcccHHHHHHHHHhCCCCCCCc
Confidence 689999999954 77766755 99999999999865 46884
No 73
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.85 E-value=5.1 Score=27.61 Aligned_cols=32 Identities=13% Similarity=0.347 Sum_probs=21.9
Q ss_pred CcccccccccccccceeeecccC--cCCcCCccccccc
Q 024019 232 CSECPICLEEFHVGNEVKISFLS--IFYSSCSVSDFTY 267 (274)
Q Consensus 232 ~~eCsICLedFe~GEevR~LPcC--~FH~~CI~~w~~~ 267 (274)
...|.||.+. |+.+.-= -| .||..|+.|-++.
T Consensus 9 ~~~C~vC~~~---g~ll~Cd-~C~~~~H~~Cl~ppl~~ 42 (56)
T 2yql_A 9 EDFCSVCRKS---GQLLMCD-TCSRVYHLDCLDPPLKT 42 (56)
T ss_dssp CCSCSSSCCS---SCCEECS-SSSCEECSSSSSSCCCS
T ss_pred CCCCccCCCC---CeEEEcC-CCCcceECccCCCCcCC
Confidence 3679999763 4433322 34 9999999987764
No 74
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=59.28 E-value=3.5 Score=28.15 Aligned_cols=30 Identities=10% Similarity=-0.030 Sum_probs=22.9
Q ss_pred ccccccccccccceeeecc-cC--cCCcCCccc
Q 024019 234 ECPICLEEFHVGNEVKISF-LS--IFYSSCSVS 263 (274)
Q Consensus 234 eCsICLedFe~GEevR~LP-cC--~FH~~CI~~ 263 (274)
.|.+|.+.+.+|+.+..== .| .||..|+.-
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl 36 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGV 36 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTC
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCC
Confidence 5779999998776665544 45 899999864
No 75
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=59.13 E-value=6.7 Score=27.62 Aligned_cols=31 Identities=13% Similarity=0.282 Sum_probs=20.5
Q ss_pred cccccccccccccceeeecccC--cCCcCCccccccc
Q 024019 233 SECPICLEEFHVGNEVKISFLS--IFYSSCSVSDFTY 267 (274)
Q Consensus 233 ~eCsICLedFe~GEevR~LPcC--~FH~~CI~~w~~~ 267 (274)
..|.||.+ .|+.+.-= .| .||..|+.|-++.
T Consensus 10 ~~C~vC~~---~g~ll~Cd-~C~~~fH~~Cl~ppl~~ 42 (61)
T 1mm2_A 10 EFCRVCKD---GGELLCCD-TCPSSYHIHCLNPPLPE 42 (61)
T ss_dssp SSCTTTCC---CSSCBCCS-SSCCCBCSSSSSSCCSS
T ss_pred CcCCCCCC---CCCEEEcC-CCCHHHcccccCCCcCc
Confidence 57999964 24322221 23 9999999987654
No 76
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=58.35 E-value=6.2 Score=28.10 Aligned_cols=32 Identities=19% Similarity=0.392 Sum_probs=21.6
Q ss_pred CcccccccccccccceeeecccC--cCCcCCccccccc
Q 024019 232 CSECPICLEEFHVGNEVKISFLS--IFYSSCSVSDFTY 267 (274)
Q Consensus 232 ~~eCsICLedFe~GEevR~LPcC--~FH~~CI~~w~~~ 267 (274)
+..|.||.+. |+.+.-= -| .||..|+.|-++.
T Consensus 8 ~~~C~vC~~~---g~ll~CD-~C~~~fH~~Cl~ppl~~ 41 (66)
T 1xwh_A 8 EDECAVCRDG---GELICCD-GCPRAFHLACLSPPLRE 41 (66)
T ss_dssp CCSBSSSSCC---SSCEECS-SCCCEECTTTSSSCCSS
T ss_pred CCCCccCCCC---CCEEEcC-CCChhhcccccCCCcCc
Confidence 3689999752 4433222 34 9999999987764
No 77
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=56.18 E-value=3.4 Score=32.33 Aligned_cols=31 Identities=16% Similarity=0.303 Sum_probs=22.2
Q ss_pred cccccccccccccceeeecc-cC--cCCcCCccc
Q 024019 233 SECPICLEEFHVGNEVKISF-LS--IFYSSCSVS 263 (274)
Q Consensus 233 ~eCsICLedFe~GEevR~LP-cC--~FH~~CI~~ 263 (274)
-.|.+|.+.|.+++++..== .| .||.+|+.-
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVgl 37 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGM 37 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTC
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCc
Confidence 36999999987655443332 45 999999864
No 78
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=55.42 E-value=3.6 Score=29.87 Aligned_cols=33 Identities=15% Similarity=0.269 Sum_probs=21.5
Q ss_pred CcccccccccccccceeeecccC--cCCcCCcccccccc
Q 024019 232 CSECPICLEEFHVGNEVKISFLS--IFYSSCSVSDFTYL 268 (274)
Q Consensus 232 ~~eCsICLedFe~GEevR~LPcC--~FH~~CI~~w~~~~ 268 (274)
..+|.||.+ .|+.+.-= .| .||..|.+|.++..
T Consensus 12 ~~~C~vC~~---~~~ll~Cd-~C~~~~H~~Cl~P~l~~~ 46 (66)
T 2lri_C 12 GARCGVCGD---GTDVLRCT-HCAAAFHWRCHFPAGTSR 46 (66)
T ss_dssp TCCCTTTSC---CTTCEECS-SSCCEECHHHHCTTTCCC
T ss_pred CCCcCCCCC---CCeEEECC-CCCCceecccCCCccCcC
Confidence 368999963 34422211 23 99999999887654
No 79
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=54.20 E-value=2.2 Score=30.88 Aligned_cols=31 Identities=19% Similarity=0.350 Sum_probs=24.9
Q ss_pred cccccccccccccceeeecc-cC--cCCcCCccc
Q 024019 233 SECPICLEEFHVGNEVKISF-LS--IFYSSCSVS 263 (274)
Q Consensus 233 ~eCsICLedFe~GEevR~LP-cC--~FH~~CI~~ 263 (274)
..|.+|.+.+.+++.+..== .| .||..|+.-
T Consensus 9 ~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvgl 42 (65)
T 2vpb_A 9 YPCGICTNEVNDDQDAILCEASCQKWFHRICTGM 42 (65)
T ss_dssp CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTC
T ss_pred CcCccCCCccCCCCCeEecccCccccCchhccCC
Confidence 47999999998887766665 66 999999853
No 80
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=53.94 E-value=3.1 Score=27.90 Aligned_cols=33 Identities=12% Similarity=0.186 Sum_probs=21.6
Q ss_pred ccccccccccccceeeecccC--cCCcCCccccccc
Q 024019 234 ECPICLEEFHVGNEVKISFLS--IFYSSCSVSDFTY 267 (274)
Q Consensus 234 eCsICLedFe~GEevR~LPcC--~FH~~CI~~w~~~ 267 (274)
.|.||.+.-..++.+.-= -| .||..|++|-++.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd-~C~~~~H~~Cl~p~l~~ 36 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCD-ECNKAFHLFCLRPALYE 36 (51)
T ss_dssp CCTTTCCSSCCSCCEECT-TTCCEECHHHHCTTCCS
T ss_pred CCCCCCCCCCCCCEEECC-CCChhhCcccCCCCcCC
Confidence 589997654333333332 34 9999999987654
No 81
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=52.10 E-value=3.7 Score=29.57 Aligned_cols=34 Identities=15% Similarity=0.001 Sum_probs=22.6
Q ss_pred cccccccccccccceeeecccC--cCCcCCccccccc
Q 024019 233 SECPICLEEFHVGNEVKISFLS--IFYSSCSVSDFTY 267 (274)
Q Consensus 233 ~eCsICLedFe~GEevR~LPcC--~FH~~CI~~w~~~ 267 (274)
..|.||.+.. +|+.+..==.| .||..|+.+-...
T Consensus 19 ~~C~~C~~~~-~~~~mi~CD~C~~wfH~~Cv~~~~~~ 54 (75)
T 2k16_A 19 WICPGCNKPD-DGSPMIGCDDCDDWYHWPCVGIMAAP 54 (75)
T ss_dssp ECBTTTTBCC-SSCCEEECSSSSSEEEHHHHTCSSCC
T ss_pred cCCCCCCCCC-CCCCEEEcCCCCcccccccCCCCccC
Confidence 5699997765 35433333334 9999999876543
No 82
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=49.65 E-value=8.3 Score=26.79 Aligned_cols=31 Identities=13% Similarity=0.390 Sum_probs=21.4
Q ss_pred cccccccccccccceeeecccC--cCCcCCccccccc
Q 024019 233 SECPICLEEFHVGNEVKISFLS--IFYSSCSVSDFTY 267 (274)
Q Consensus 233 ~eCsICLedFe~GEevR~LPcC--~FH~~CI~~w~~~ 267 (274)
..|.||.+. |+.+.-= -| .||..|+.|-++.
T Consensus 6 ~~C~vC~~~---g~ll~Cd-~C~~~fH~~Cl~ppl~~ 38 (60)
T 2puy_A 6 DFCSVCRKS---GQLLMCD-TCSRVYHLDCLDPPLKT 38 (60)
T ss_dssp SSCTTTCCC---SSCEECS-SSSCEECGGGSSSCCSS
T ss_pred CCCcCCCCC---CcEEEcC-CCCcCEECCcCCCCcCC
Confidence 579999763 5433322 34 9999999987654
No 83
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.65 E-value=13 Score=28.37 Aligned_cols=37 Identities=11% Similarity=0.109 Sum_probs=23.2
Q ss_pred CCcccccccccccccceeeecccC--cCCcCCcccccccc
Q 024019 231 DCSECPICLEEFHVGNEVKISFLS--IFYSSCSVSDFTYL 268 (274)
Q Consensus 231 d~~eCsICLedFe~GEevR~LPcC--~FH~~CI~~w~~~~ 268 (274)
++..|.||.+.-..++.+.- --| .||..|+.|-++..
T Consensus 15 ~~~~C~vC~~~~~~~~ll~C-D~C~~~~H~~Cl~Ppl~~~ 53 (92)
T 2e6r_A 15 DSYICQVCSRGDEDDKLLFC-DGCDDNYHIFCLLPPLPEI 53 (92)
T ss_dssp CCCCCSSSCCSGGGGGCEEC-TTTCCEECSSSSSSCCSSC
T ss_pred CCCCCccCCCcCCCCCEEEc-CCCCchhccccCCCCcccC
Confidence 34579999765433222221 224 99999999877643
No 84
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=45.78 E-value=6.2 Score=28.70 Aligned_cols=29 Identities=21% Similarity=0.250 Sum_probs=22.8
Q ss_pred cccccccccccccceeeecccC-c-CCcCCcccc
Q 024019 233 SECPICLEEFHVGNEVKISFLS-I-FYSSCSVSD 264 (274)
Q Consensus 233 ~eCsICLedFe~GEevR~LPcC-~-FH~~CI~~w 264 (274)
.+|+||++.+.+ +..+||- . |=.+|+..+
T Consensus 19 ~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~~ 49 (79)
T 2yho_A 19 MLCMVCCEEEIN---STFCPCGHTVCCESCAAQL 49 (79)
T ss_dssp TBCTTTSSSBCC---EEEETTCBCCBCHHHHTTC
T ss_pred CEeEEeCcccCc---EEEECCCCHHHHHHHHHhc
Confidence 589999988765 6678966 4 778888765
No 85
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=43.38 E-value=14 Score=28.45 Aligned_cols=31 Identities=19% Similarity=0.430 Sum_probs=21.1
Q ss_pred cccccccccccccceeeecccC--cCCcCCccccccc
Q 024019 233 SECPICLEEFHVGNEVKISFLS--IFYSSCSVSDFTY 267 (274)
Q Consensus 233 ~eCsICLedFe~GEevR~LPcC--~FH~~CI~~w~~~ 267 (274)
..|.+|.+. |+.+.- --| .||..|++|-++.
T Consensus 26 ~~C~vC~~~---g~LL~C-D~C~~~fH~~Cl~PpL~~ 58 (88)
T 1fp0_A 26 TICRVCQKP---GDLVMC-NQCEFCFHLDCHLPALQD 58 (88)
T ss_dssp SCCSSSCSS---SCCEEC-TTSSCEECTTSSSTTCCC
T ss_pred CcCcCcCCC---CCEEEC-CCCCCceecccCCCCCCC
Confidence 589999753 442221 223 9999999998764
No 86
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=42.60 E-value=9.4 Score=28.91 Aligned_cols=33 Identities=15% Similarity=0.285 Sum_probs=22.0
Q ss_pred Ccccccccccc-cccceeeecccC--cCCcCCcccc
Q 024019 232 CSECPICLEEF-HVGNEVKISFLS--IFYSSCSVSD 264 (274)
Q Consensus 232 ~~eCsICLedF-e~GEevR~LPcC--~FH~~CI~~w 264 (274)
...|.||.+.- .+++++..=-.| .||..|+.|-
T Consensus 25 ~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~ 60 (88)
T 2l43_A 25 DAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVP 60 (88)
T ss_dssp CCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCS
T ss_pred CCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCC
Confidence 46899997643 333444443445 9999999875
No 87
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=42.29 E-value=13 Score=28.39 Aligned_cols=33 Identities=21% Similarity=0.172 Sum_probs=23.1
Q ss_pred cccccccccccccceeeecccC-cCCcCCcccccc
Q 024019 233 SECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFT 266 (274)
Q Consensus 233 ~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~ 266 (274)
..| ||-.....|+.|.-==|- .||..|+.+-.+
T Consensus 29 vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~ 62 (98)
T 2lv9_A 29 TRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQ 62 (98)
T ss_dssp CCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTT
T ss_pred EEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCcc
Confidence 567 898887777654433222 999999988654
No 88
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=42.03 E-value=21 Score=27.31 Aligned_cols=37 Identities=14% Similarity=0.183 Sum_probs=22.8
Q ss_pred CcccccccccccccceeeecccC-cCCcCCcccccccc
Q 024019 232 CSECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFTYL 268 (274)
Q Consensus 232 ~~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~~~ 268 (274)
+..|.||.+.=+.++.+.=--|. .||..|+.+..+.+
T Consensus 7 ~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~ 44 (111)
T 2ysm_A 7 GANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPL 44 (111)
T ss_dssp CSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTT
T ss_pred CCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccc
Confidence 35799997652222223222222 99999999987643
No 89
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=41.46 E-value=8.5 Score=27.09 Aligned_cols=32 Identities=16% Similarity=0.340 Sum_probs=22.0
Q ss_pred CcccccccccccccceeeecccC--cCCcCCccccccc
Q 024019 232 CSECPICLEEFHVGNEVKISFLS--IFYSSCSVSDFTY 267 (274)
Q Consensus 232 ~~eCsICLedFe~GEevR~LPcC--~FH~~CI~~w~~~ 267 (274)
...|.+|.+ .|+.+.-= -| .||..|+.|-++.
T Consensus 11 ~~~C~vC~~---~g~ll~CD-~C~~~fH~~Cl~p~l~~ 44 (61)
T 2l5u_A 11 QDYCEVCQQ---GGEIILCD-TCPRAYHMVCLDPDMEK 44 (61)
T ss_dssp CSSCTTTSC---CSSEEECS-SSSCEEEHHHHCTTCCS
T ss_pred CCCCccCCC---CCcEEECC-CCChhhhhhccCCCCCC
Confidence 368999976 25443333 34 9999999997654
No 90
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=38.72 E-value=13 Score=26.76 Aligned_cols=31 Identities=13% Similarity=0.155 Sum_probs=22.5
Q ss_pred cccccccccccccceeeecccC--cCCcCCcccc
Q 024019 233 SECPICLEEFHVGNEVKISFLS--IFYSSCSVSD 264 (274)
Q Consensus 233 ~eCsICLedFe~GEevR~LPcC--~FH~~CI~~w 264 (274)
..| ||.+.+.+|+.+.+=-.| .||..|+..-
T Consensus 17 ~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~ 49 (72)
T 1wee_A 17 VDC-KCGTKDDDGERMLACDGCGVWHHTRCIGIN 49 (72)
T ss_dssp ECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCC
T ss_pred eEe-eCCCccCCCCcEEECCCCCCccCCeeeccC
Confidence 568 798888778654443445 9999998754
No 91
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A*
Probab=37.39 E-value=15 Score=30.80 Aligned_cols=51 Identities=12% Similarity=0.245 Sum_probs=28.1
Q ss_pred hhcccCCCcc--ccCCCCccChhhHHHHHHHHhcCCceeeecCCCCCcccccccc
Q 024019 188 EMRGIGQDTA--AYHPGLYLTAAQREAVEALIQELPKFRLKAVPTDCSECPICLE 240 (274)
Q Consensus 188 ~~r~~~~D~~--~~~~G~~ltPaqreavEa~IqaLP~~~~t~~~~d~~eCsICLe 240 (274)
+|||+|.-.. ..--| +++.+++..++.|++|--..++++..+..+.-||.+
T Consensus 2 ~~~~~~~~~~~~~~~sg--l~~~~~~~l~~~i~~lgG~~~~~~~~~~~THlv~~~ 54 (199)
T 3u3z_A 2 HMSGRGKKPTRTLVMTS--MPSEKQNVVIQVVDKLKGFSIAPDVCETTTHVLSGK 54 (199)
T ss_dssp --------CCCEEEEES--CCHHHHHHHHHHHHHHCSCEEESSCCTTEEEEEESS
T ss_pred CcCcCCCCCCeEEEEcC--CCHHHHHHHHHHHHHcCCcEEecCCCCCCeEEEECC
Confidence 6788777654 22335 889999999999999987777544333233445543
No 92
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=36.71 E-value=12 Score=29.51 Aligned_cols=28 Identities=18% Similarity=0.434 Sum_probs=21.1
Q ss_pred Ccccccccccccccceeeeccc--C--cCCcCCccc
Q 024019 232 CSECPICLEEFHVGNEVKISFL--S--IFYSSCSVS 263 (274)
Q Consensus 232 ~~eCsICLedFe~GEevR~LPc--C--~FH~~CI~~ 263 (274)
+..|+|| +-|..++ .+|| | .||..|.-+
T Consensus 15 D~~C~VC-~~~t~~~---l~pCRvC~RvfH~~CL~r 46 (89)
T 1wil_A 15 DEMCDVC-EVWTAES---LFPCRVCTRVFHDGCLRR 46 (89)
T ss_dssp SCCCTTT-CCCCSSC---CSSCSSSSSCCCHHHHHH
T ss_pred CcccCcc-ccccccc---eeccccccccccHhhccc
Confidence 3689999 6677665 5674 3 999999866
No 93
>2j89_A Methionine sulfoxide reductase A; MSRA, poplar, oxidoreductase; 1.7A {Populus trichocarpa}
Probab=35.07 E-value=9.6 Score=34.99 Aligned_cols=36 Identities=25% Similarity=0.436 Sum_probs=29.1
Q ss_pred hhhhhhcccCCCcc-ccCCCC-ccChhhHHHHHHHHhcC
Q 024019 184 AAGQEMRGIGQDTA-AYHPGL-YLTAAQREAVEALIQEL 220 (274)
Q Consensus 184 ~~~~~~r~~~~D~~-~~~~G~-~ltPaqreavEa~IqaL 220 (274)
||-+.+| -|+|.| -||.|. |.+++|+++.|+.++++
T Consensus 171 DPT~~nr-QG~D~GtQYRSaIfy~~eeQ~~~Ae~s~~~~ 208 (261)
T 2j89_A 171 DPTTLNR-QGNDVGTQYRSGIYYYTPEQEKAAKESLERQ 208 (261)
T ss_dssp CTTSTTE-ETTEESGGGCEEEEESSHHHHHHHHHHHHHH
T ss_pred CCcccCC-CCCCCCccccccccCCCHHHHHHHHHHHHHH
Confidence 7777776 468998 888887 67899999988887755
No 94
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=31.72 E-value=13 Score=27.27 Aligned_cols=34 Identities=15% Similarity=0.303 Sum_probs=21.7
Q ss_pred CCcccccccccc-cccceeeecccC--cCCcCCcccc
Q 024019 231 DCSECPICLEEF-HVGNEVKISFLS--IFYSSCSVSD 264 (274)
Q Consensus 231 d~~eCsICLedF-e~GEevR~LPcC--~FH~~CI~~w 264 (274)
+...|.||.+.- .+++++..==.| .||..|..+-
T Consensus 15 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~ 51 (71)
T 2ku3_A 15 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVP 51 (71)
T ss_dssp SSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCS
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCC
Confidence 346899997653 333333332334 9999999875
No 95
>3bqh_A PILB, peptide methionine sulfoxide reductase MSRA/MSRB; methionine sulfoxide reductase A, oxidized form, elect transport; 1.95A {Neisseria meningitidis} PDB: 3bqe_A 3bqf_A* 3bqg_A
Probab=30.51 E-value=17 Score=31.71 Aligned_cols=36 Identities=22% Similarity=0.434 Sum_probs=28.2
Q ss_pred hhhhhhcccCCCcc-ccCCCC-ccChhhHHHHHHHHhcC
Q 024019 184 AAGQEMRGIGQDTA-AYHPGL-YLTAAQREAVEALIQEL 220 (274)
Q Consensus 184 ~~~~~~r~~~~D~~-~~~~G~-~ltPaqreavEa~IqaL 220 (274)
+|-+.+| -|+|.| -||.+. |.+++|+++.++.|++|
T Consensus 79 DPT~~nr-QG~D~G~QYRS~If~~~~~Q~~~A~~~~~~~ 116 (193)
T 3bqh_A 79 DPTSLNK-QGNDTGTQYRSGVYYTDPAEKAVIAAALKRE 116 (193)
T ss_dssp CCBGGGS-SSCCTTCTTCEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCCCC-CCCCcCccceeeeecCCHHHHHHHHHHHHHH
Confidence 7777666 368988 888887 67899999988887654
No 96
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=30.42 E-value=22 Score=27.50 Aligned_cols=34 Identities=18% Similarity=0.433 Sum_probs=21.0
Q ss_pred CcccccccccccccceeeecccC-----cCCcCCcccccccc
Q 024019 232 CSECPICLEEFHVGNEVKISFLS-----IFYSSCSVSDFTYL 268 (274)
Q Consensus 232 ~~eCsICLedFe~GEevR~LPcC-----~FH~~CI~~w~~~~ 268 (274)
+..|.||.+.=++++ .|-+| .||..|.+|-++..
T Consensus 61 C~~C~vC~~~~~~~~---~ll~Cd~C~~~yH~~Cl~p~l~~~ 99 (112)
T 3v43_A 61 CKTCSSCRDQGKNAD---NMLFCDSCDRGFHMECCDPPLTRM 99 (112)
T ss_dssp TCCBTTTCCCCCTTC---CCEECTTTCCEECGGGCSSCCSSC
T ss_pred CCccccccCcCCCcc---ceEEcCCCCCeeecccCCCCCCCC
Confidence 346778865422222 23334 89999999877643
No 97
>1nwa_A Peptide methionine sulfoxide reductase MSRA; oxidoreductase, product complex, structural genomics, PSI, protein structure initiative; 1.50A {Mycobacterium tuberculosis} SCOP: d.58.28.1
Probab=30.37 E-value=13 Score=32.88 Aligned_cols=38 Identities=18% Similarity=0.379 Sum_probs=29.3
Q ss_pred hhhhhhcccCCCcc-ccCCCC-ccChhhHHHHHHHHhcCCc
Q 024019 184 AAGQEMRGIGQDTA-AYHPGL-YLTAAQREAVEALIQELPK 222 (274)
Q Consensus 184 ~~~~~~r~~~~D~~-~~~~G~-~ltPaqreavEa~IqaLP~ 222 (274)
||-+.+| -|+|.| -||.+. |.+++|+++.++.|++|-.
T Consensus 98 DPT~~nr-QG~D~GtQYRSaIfy~~~eQ~~~A~~~~~~lq~ 137 (203)
T 1nwa_A 98 DPTTKDR-QGNDRGTSYRSAIFYFDEQQKRIALDTIADVEA 137 (203)
T ss_dssp CTTSTTE-ETTEESGGGCEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCcccCC-CCCCCCccccccccCCCHHHHHHHHHHHHHHHH
Confidence 7777666 368888 788887 6779999998888876543
No 98
>1ff3_A Peptide methionine sulfoxide reductase; alpha beta roll, PMSR, MSRA, oxidoreductase; 1.90A {Escherichia coli} SCOP: d.58.28.1 PDB: 2gt3_A 2iem_A
Probab=28.94 E-value=15 Score=32.66 Aligned_cols=36 Identities=31% Similarity=0.462 Sum_probs=28.0
Q ss_pred hhhhhhcccCCCcc-ccCCCC-ccChhhHHHHHHHHhcC
Q 024019 184 AAGQEMRGIGQDTA-AYHPGL-YLTAAQREAVEALIQEL 220 (274)
Q Consensus 184 ~~~~~~r~~~~D~~-~~~~G~-~ltPaqreavEa~IqaL 220 (274)
||-+.+| -|+|.| -||.+. |.+++|+++.|+.++++
T Consensus 119 DPT~~nr-QG~D~GtQYRSaIf~~~~eQ~~~A~~~~~~~ 156 (211)
T 1ff3_A 119 DPAQGMR-QGNDHGTQYRSAIYPLTPEQDAAARASLERF 156 (211)
T ss_dssp CTTSSSE-ETTEESGGGCCEECCSSHHHHHHHHHHHHHH
T ss_pred CCcccCC-CCCCcCccceeeeecCCHHHHHHHHHHHHHH
Confidence 7777776 368888 888887 67799999988877643
No 99
>4gwb_A Peptide methionine sulfoxide reductase MSRA 3; structural genomics, protein structure initiative, nysgrc, R PSI-biology; 1.20A {Sinorhizobium meliloti}
Probab=28.80 E-value=14 Score=31.58 Aligned_cols=36 Identities=19% Similarity=0.446 Sum_probs=28.3
Q ss_pred hhhhhhcccCCCcc-ccCCCC-ccChhhHHHHHHHHhcC
Q 024019 184 AAGQEMRGIGQDTA-AYHPGL-YLTAAQREAVEALIQEL 220 (274)
Q Consensus 184 ~~~~~~r~~~~D~~-~~~~G~-~ltPaqreavEa~IqaL 220 (274)
||-+.+| -|+|.| -||.+. |.+++|++..++.+++|
T Consensus 75 DPT~~nr-Qg~D~G~QYRS~If~~~~~Q~~~a~~~~~~l 112 (168)
T 4gwb_A 75 DPTTKDR-QGNDIGTSYRSAIYYVDDEQKRIAQETIADV 112 (168)
T ss_dssp CTTSTTE-ETTEESGGGCEEEEESSHHHHHHHHHHHHHH
T ss_pred CCcCcCC-CCCCCCcCceEEEecCCHHHHHHHHHHHHHH
Confidence 7777666 368888 788887 77899999988888765
No 100
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=28.36 E-value=47 Score=24.76 Aligned_cols=35 Identities=17% Similarity=0.229 Sum_probs=27.7
Q ss_pred cChhhHHHHHHHHhcCCceeeecCCCCCccccccc
Q 024019 205 LTAAQREAVEALIQELPKFRLKAVPTDCSECPICL 239 (274)
Q Consensus 205 ltPaqreavEa~IqaLP~~~~t~~~~d~~eCsICL 239 (274)
++|+-++.++++|++-|.+.++...-+...|+-|.
T Consensus 3 ~s~~~~~~v~~~i~~~~Vvvy~k~t~~~p~Cp~C~ 37 (109)
T 3ipz_A 3 LTPQLKDTLEKLVNSEKVVLFMKGTRDFPMCGFSN 37 (109)
T ss_dssp CCHHHHHHHHHHHTSSSEEEEESBCSSSBSSHHHH
T ss_pred CCHHHHHHHHHHHccCCEEEEEecCCCCCCChhHH
Confidence 78888999999999999999976532335688884
No 101
>3pim_A Peptide methionine sulfoxide reductase; methionine-S-sulfoxide reductase, oxidoreductase; 1.90A {Saccharomyces cerevisiae} PDB: 3pil_A 3pin_B
Probab=27.37 E-value=14 Score=32.19 Aligned_cols=37 Identities=19% Similarity=0.286 Sum_probs=25.7
Q ss_pred hhhhhhcccCCCcc-ccCCCC-ccChhhHHHHHHHHhcCC
Q 024019 184 AAGQEMRGIGQDTA-AYHPGL-YLTAAQREAVEALIQELP 221 (274)
Q Consensus 184 ~~~~~~r~~~~D~~-~~~~G~-~ltPaqreavEa~IqaLP 221 (274)
||-+.+| -|+|.| -||.+. |.+++||+..++.+++|-
T Consensus 104 DPT~~nr-QG~D~G~QYRS~Ify~~~~Q~~~A~~~~~~l~ 142 (187)
T 3pim_A 104 DPTTSNS-QGPDKGTQYRSGLFAHSDADLKELAKIKEEWQ 142 (187)
T ss_dssp CCBTTCC------CGGGCCEEEESSHHHHHHHHHHHHHHG
T ss_pred CCCcCCC-CCCCcCcccceeeEeCCHHHHHHHHHHHHHHH
Confidence 6766665 258888 888888 678999999999888764
No 102
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=27.17 E-value=54 Score=25.23 Aligned_cols=35 Identities=20% Similarity=0.340 Sum_probs=26.6
Q ss_pred cChhhHHHHHHHHhcCCceeeecCCCCCccccccc
Q 024019 205 LTAAQREAVEALIQELPKFRLKAVPTDCSECPICL 239 (274)
Q Consensus 205 ltPaqreavEa~IqaLP~~~~t~~~~d~~eCsICL 239 (274)
|+++-++.++++|++=|.+.++....++..|+-|.
T Consensus 1 ~~~~~~~~v~~~i~~~~Vvvfsk~t~~~p~Cp~C~ 35 (121)
T 3gx8_A 1 LSTEIRKAIEDAIESAPVVLFMKGTPEFPKCGFSR 35 (121)
T ss_dssp -CHHHHHHHHHHHHSCSEEEEESBCSSSBCTTHHH
T ss_pred CCHHHHHHHHHHhccCCEEEEEeccCCCCCCccHH
Confidence 46777888999999999999986533345788884
No 103
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.98 E-value=28 Score=25.76 Aligned_cols=34 Identities=9% Similarity=0.192 Sum_probs=21.3
Q ss_pred ccccccccccccceeeecccC--cCCcCCcccccccc
Q 024019 234 ECPICLEEFHVGNEVKISFLS--IFYSSCSVSDFTYL 268 (274)
Q Consensus 234 eCsICLedFe~GEevR~LPcC--~FH~~CI~~w~~~~ 268 (274)
.|.||.+.=..|+.+. ==-| .||..|++|-++..
T Consensus 28 ~C~vC~~~~~~~~ll~-CD~C~~~yH~~Cl~Ppl~~~ 63 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLL-CDECNVAYHIYCLNPPLDKV 63 (77)
T ss_dssp SCSSSCCCCCSTTEEE-CSSSCCEEETTSSSSCCSSC
T ss_pred CCcCcCCcCCCCCEEE-cCCCCccccccccCCCccCC
Confidence 6789976433333222 2223 99999999877654
No 104
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=26.03 E-value=21 Score=27.79 Aligned_cols=32 Identities=16% Similarity=0.240 Sum_probs=20.1
Q ss_pred ccccccccc----cccceeeeccc--C--cCCcCCccccc
Q 024019 234 ECPICLEEF----HVGNEVKISFL--S--IFYSSCSVSDF 265 (274)
Q Consensus 234 eCsICLedF----e~GEevR~LPc--C--~FH~~CI~~w~ 265 (274)
.|.+|++.= +.|+.-..+-| | .||..|+.+..
T Consensus 3 ~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~ 42 (114)
T 2kwj_A 3 YCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTL 42 (114)
T ss_dssp CCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCH
T ss_pred cCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChh
Confidence 599998754 22333223322 2 99999998764
No 105
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=25.51 E-value=33 Score=24.67 Aligned_cols=31 Identities=19% Similarity=0.353 Sum_probs=20.7
Q ss_pred cccccccccccccceeeecccC--cCCcCCccccc
Q 024019 233 SECPICLEEFHVGNEVKISFLS--IFYSSCSVSDF 265 (274)
Q Consensus 233 ~eCsICLedFe~GEevR~LPcC--~FH~~CI~~w~ 265 (274)
..| ||.+.+. |+.+.+=-.| .||.+|+..--
T Consensus 20 ~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~ 52 (68)
T 3o70_A 20 VTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRK 52 (68)
T ss_dssp CCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCT
T ss_pred eEe-ECCCcCC-CCCEEECCCCCccccccccCcCc
Confidence 568 9988776 5433333335 99999997543
No 106
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=25.37 E-value=24 Score=25.55 Aligned_cols=34 Identities=12% Similarity=0.253 Sum_probs=20.4
Q ss_pred ccccccccccccceeeecccC--cCCcCCcccccccc
Q 024019 234 ECPICLEEFHVGNEVKISFLS--IFYSSCSVSDFTYL 268 (274)
Q Consensus 234 eCsICLedFe~GEevR~LPcC--~FH~~CI~~w~~~~ 268 (274)
.|.||.+.=..|+.+ .==-| .||..|++|-++..
T Consensus 20 ~C~~C~~~~~~~~ll-~CD~C~~~yH~~Cl~Ppl~~~ 55 (70)
T 3asl_A 20 ACHLCGGRQDPDKQL-MCDECDMAFHIYCLDPPLSSV 55 (70)
T ss_dssp SBTTTCCCSCGGGEE-ECTTTCCEEEGGGSSSCCSSC
T ss_pred CCcCCCCcCCCCCEE-EcCCCCCceecccCCCCcCCC
Confidence 466886543333322 22223 99999999877643
No 107
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=25.32 E-value=28 Score=27.06 Aligned_cols=35 Identities=9% Similarity=0.034 Sum_probs=22.5
Q ss_pred cccccccccccccceeeecccC--cCCcCCcccccccc
Q 024019 233 SECPICLEEFHVGNEVKISFLS--IFYSSCSVSDFTYL 268 (274)
Q Consensus 233 ~eCsICLedFe~GEevR~LPcC--~FH~~CI~~w~~~~ 268 (274)
..|.||.+.-.+|+.+.-= -| .||..|+.|-++..
T Consensus 59 ~~C~~C~~~~~~~~ll~Cd-~C~~~yH~~Cl~ppl~~~ 95 (114)
T 2kwj_A 59 KSCILCGTSENDDQLLFCD-DCDRGYHMYCLNPPVAEP 95 (114)
T ss_dssp CCCTTTTCCTTTTTEEECS-SSCCEEETTTSSSCCSSC
T ss_pred CccCcccccCCCCceEEcC-CCCccccccccCCCccCC
Confidence 4678887654444433322 23 99999999876643
No 108
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=24.96 E-value=32 Score=25.81 Aligned_cols=34 Identities=18% Similarity=0.391 Sum_probs=21.6
Q ss_pred cccccccccccc-cceeeecccC--cCCcCCcccccc
Q 024019 233 SECPICLEEFHV-GNEVKISFLS--IFYSSCSVSDFT 266 (274)
Q Consensus 233 ~eCsICLedFe~-GEevR~LPcC--~FH~~CI~~w~~ 266 (274)
..|.||.+.-.. ++.+..==-| .||..|.+|-++
T Consensus 17 ~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~ 53 (88)
T 1wev_A 17 LACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVT 53 (88)
T ss_dssp CSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCC
T ss_pred CcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCccc
Confidence 579999765332 2222222223 999999999776
No 109
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=23.94 E-value=18 Score=26.43 Aligned_cols=30 Identities=23% Similarity=0.393 Sum_probs=19.4
Q ss_pred cccccccccccccceeeecccC--cCCcCCccc
Q 024019 233 SECPICLEEFHVGNEVKISFLS--IFYSSCSVS 263 (274)
Q Consensus 233 ~eCsICLedFe~GEevR~LPcC--~FH~~CI~~ 263 (274)
.-| ||.+.+.+++.+.+==.| .||.+|+.-
T Consensus 13 ~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl 44 (79)
T 1wep_A 13 VYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGI 44 (79)
T ss_dssp CCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTC
T ss_pred cEE-EcCCccCCCCceEEcCCCCCcEEeeecCc
Confidence 456 999888644433332235 999999853
No 110
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=23.05 E-value=39 Score=20.75 Aligned_cols=27 Identities=15% Similarity=0.311 Sum_probs=21.0
Q ss_pred cccccccccccccceeeecccCcCCcCC
Q 024019 233 SECPICLEEFHVGNEVKISFLSIFYSSC 260 (274)
Q Consensus 233 ~eCsICLedFe~GEevR~LPcC~FH~~C 260 (274)
..|+.|.+..-..|.+...- ..||.+|
T Consensus 4 ~~C~~C~k~Vy~~Ek~~~~g-~~~Hk~C 30 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVNCLD-KFWHKAC 30 (31)
T ss_dssp CBCSSSCSBCCGGGCCCSSS-SCCCGGG
T ss_pred CcCCccCCEEecceeEEECC-eEecccC
Confidence 47999999998888766441 2899988
No 111
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=22.75 E-value=35 Score=24.21 Aligned_cols=29 Identities=14% Similarity=0.281 Sum_probs=20.0
Q ss_pred cccccccccccccceeeec-ccC--cCCcCCcc
Q 024019 233 SECPICLEEFHVGNEVKIS-FLS--IFYSSCSV 262 (274)
Q Consensus 233 ~eCsICLedFe~GEevR~L-PcC--~FH~~CI~ 262 (274)
..| ||.+....|.+|.-= +.| .||..|+.
T Consensus 11 v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvg 42 (68)
T 2rsd_A 11 VRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVL 42 (68)
T ss_dssp ECC-TTCCCSCCSCEEECSCTTTCEEEETTTSC
T ss_pred EEe-ECCCCcCCCCEEEECCCCCCCeEchhhCC
Confidence 457 897777777655432 236 99999984
No 112
>1fvg_A Peptide methionine sulfoxide reductase; oxidoreductase; 1.60A {Bos taurus} SCOP: d.58.28.1 PDB: 1fva_A 2l90_A*
Probab=22.60 E-value=20 Score=31.50 Aligned_cols=36 Identities=22% Similarity=0.274 Sum_probs=27.9
Q ss_pred hhhhhhcccCCCcc-ccCCCC-ccChhhHHHHHHHHhcC
Q 024019 184 AAGQEMRGIGQDTA-AYHPGL-YLTAAQREAVEALIQEL 220 (274)
Q Consensus 184 ~~~~~~r~~~~D~~-~~~~G~-~ltPaqreavEa~IqaL 220 (274)
||-+.+| -|+|.| -||.+. |.+++|++..++.++++
T Consensus 120 DPT~~nr-QG~D~G~QYRS~If~~~~~Q~~~A~~~~~~~ 157 (199)
T 1fvg_A 120 DPTQGMR-QGNDHGSQYRSAIYPTSAEHVGAALKSKEDY 157 (199)
T ss_dssp CTTCSSE-ETTEESGGGCEEECCSSHHHHHHHHHHHHHH
T ss_pred CCcccCC-CCCCCChhheeccccCCHHHHHHHHHHHHHH
Confidence 7777776 368888 888887 66799999988877643
No 113
>3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion, msrab, linker, hinge, cell membrane, membrane, multifunctional enzyme, oxidoreductase; 2.40A {Streptococcus pneumoniae}
Probab=21.95 E-value=26 Score=32.79 Aligned_cols=36 Identities=25% Similarity=0.374 Sum_probs=28.7
Q ss_pred hhhhhhcccCCCcc-ccCCCC-ccChhhHHHHHHHHhcC
Q 024019 184 AAGQEMRGIGQDTA-AYHPGL-YLTAAQREAVEALIQEL 220 (274)
Q Consensus 184 ~~~~~~r~~~~D~~-~~~~G~-~ltPaqreavEa~IqaL 220 (274)
+|-+.+| -|+|.| -||.+. |.+++|+++.++.+++|
T Consensus 77 DPT~~nr-QG~D~G~QYRS~Ify~~~~Q~~~a~~~~~~~ 114 (313)
T 3e0m_A 77 DPLSINQ-QGNDRGRQYRTGIYYQDEADLPAIYTVVQEQ 114 (313)
T ss_dssp CTTCSSE-ETTEESGGGCCEEEESCGGGHHHHHHHHHHH
T ss_pred CCCcCCC-cCCCCccccceeEecCCHHHHHHHHHHHHHH
Confidence 7777666 368888 888887 67899999988888766
No 114
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=21.79 E-value=13 Score=30.51 Aligned_cols=26 Identities=23% Similarity=0.612 Sum_probs=19.2
Q ss_pred cccccccccccccceeeecccC-----cCCcCCccccc
Q 024019 233 SECPICLEEFHVGNEVKISFLS-----IFYSSCSVSDF 265 (274)
Q Consensus 233 ~eCsICLedFe~GEevR~LPcC-----~FH~~CI~~w~ 265 (274)
..|.||.+ |. +|.|| .||.+|++|-+
T Consensus 58 ~~C~vC~d----GG---~LlcCd~Cpr~Fc~~Cl~~~l 88 (129)
T 3ql9_A 58 EQCRWCAE----GG---NLICCDFCHNAFCKKCILRNL 88 (129)
T ss_dssp SSCTTTCC----CS---EEEECSSSSCEEEHHHHHHHT
T ss_pred CcCeecCC----CC---eeEecCCCchhhhHHHhCCCc
Confidence 57999964 33 34455 99999999864
No 115
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=20.80 E-value=36 Score=24.92 Aligned_cols=31 Identities=10% Similarity=0.188 Sum_probs=20.3
Q ss_pred cccccccccccccceeeecccC-cCCcCCccc
Q 024019 233 SECPICLEEFHVGNEVKISFLS-IFYSSCSVS 263 (274)
Q Consensus 233 ~eCsICLedFe~GEevR~LPcC-~FH~~CI~~ 263 (274)
..|+||+++|...-..+-++|- .|=.+|+..
T Consensus 4 ~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~ 35 (101)
T 2jun_A 4 VLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA 35 (101)
T ss_dssp CBCTTCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred CCCcCCCCCCCCCceEECCcCChHHhHHHCHH
Confidence 6799998876543334447765 666666664
Done!