BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024020
(274 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 384 bits (987), Expect = e-107, Method: Compositional matrix adjust.
Identities = 199/318 (62%), Positives = 217/318 (68%), Gaps = 47/318 (14%)
Query: 2 ENFPVISLENINGAERAAILEKINEACENWGFFE-------------------------- 35
ENFP+ISL+ +NG ERAA E I +ACENWGFFE
Sbjct: 2 ENFPIISLDKVNGVERAATXEXIKDACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCX 61
Query: 36 -------------------VNDMDWESTFYVRHLPQSTINEVPDLDEEYRKVMXXXXXXX 76
V D DWESTF+++HLP S I+EVPDLDEEYR+V
Sbjct: 62 EQRFKELVASKALEGVQAEVTDXDWESTFFLKHLPISNISEVPDLDEEYREVXRDFAKRL 121
Query: 77 XXXXXXXXXXXXXXXXXXXGYLKKVFHGANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAG 136
GYLK F+G+ GP FGTKVSNYPPCPKPDLIKGLRAHTDAG
Sbjct: 122 EKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAG 181
Query: 137 GIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVVSQTD 196
GIILLFQDDKVSGLQLLKDGQWIDVPP RHSIVVNLGDQ+EVITNGKYKSV HRV++Q D
Sbjct: 182 GIILLFQDDKVSGLQLLKDGQWIDVPPXRHSIVVNLGDQLEVITNGKYKSVXHRVIAQKD 241
Query: 197 GEGRMSLASFYNPGSDAVIYPAPALLEKEAEK-KQVYPKFVFEDYMKLYVPLKFQAKEPR 255
G R SLASFYNPGSDAVIYPAPAL+EKEAE+ KQVYPKFVF+DY KLY LKFQAKEPR
Sbjct: 242 G-ARXSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDYXKLYAGLKFQAKEPR 300
Query: 256 FEAMKAVETNVNLGPIAT 273
FEA KA ET+V PIAT
Sbjct: 301 FEAXKAXETDVKXDPIAT 318
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 87.8 bits (216), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 82/146 (56%), Gaps = 5/146 (3%)
Query: 98 LKKVFHGANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQ 157
L+K G K++ YP CP+P+L G+ AHTD + + + V GLQL +G+
Sbjct: 198 LEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHN-MVPGLQLFYEGK 256
Query: 158 WIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVVSQTDGEGRMSLASFYNPGSDAVIY- 216
W+ + SIV+++GD +E+++NGKYKS+ HR + + + R+S A F P D ++
Sbjct: 257 WVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKE-KVRISWAVFCEPPKDKIVLK 315
Query: 217 PAPALLEKEAEKKQVYPKFVFEDYMK 242
P P ++ E+ K +P F +++
Sbjct: 316 PLPEMVSVESPAK--FPPRTFAQHIE 339
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 87.4 bits (215), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 82/146 (56%), Gaps = 5/146 (3%)
Query: 98 LKKVFHGANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQ 157
L+K G K++ YP CP+P+L G+ AHTD + + + V GLQL +G+
Sbjct: 197 LEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHN-MVPGLQLFYEGK 255
Query: 158 WIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVVSQTDGEGRMSLASFYNPGSDAVIY- 216
W+ + SIV+++GD +E+++NGKYKS+ HR + + + R+S A F P D ++
Sbjct: 256 WVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKE-KVRISWAVFCEPPKDKIVLK 314
Query: 217 PAPALLEKEAEKKQVYPKFVFEDYMK 242
P P ++ E+ K +P F +++
Sbjct: 315 PLPEMVSVESPAK--FPPRTFAQHIE 338
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 80/146 (54%), Gaps = 5/146 (3%)
Query: 98 LKKVFHGANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQ 157
L+K G K++ YP CP+P+L G+ AHTD + + + V GLQL +G+
Sbjct: 198 LEKEVGGLEELLLQXKINYYPKCPQPELALGVEAHTDVSALTFILHN-XVPGLQLFYEGK 256
Query: 158 WIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVVSQTDGEGRMSLASFYNPGSDAVIY- 216
W+ + SIV ++GD +E+++NGKYKS+ HR + + + R+S A F P D ++
Sbjct: 257 WVTAKCVPDSIVXHIGDTLEILSNGKYKSILHRGLVNKE-KVRISWAVFCEPPKDKIVLK 315
Query: 217 PAPALLEKEAEKKQVYPKFVFEDYMK 242
P P + E+ K +P F +++
Sbjct: 316 PLPEXVSVESPAK--FPPRTFAQHIE 339
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 55/104 (52%), Gaps = 5/104 (4%)
Query: 113 KVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLL-KDGQWIDVPPLRHSIVVN 171
++ +YPP PK AH D I LL ++ GL++L +DGQW+ + P +V+N
Sbjct: 172 RLLHYPPIPKDATGVRAGAHGDINTITLLLGAEE-GGLEVLDRDGQWLPINPPPGCLVIN 230
Query: 172 LGDQIEVITNGKYKSVEHRVVS---QTDGEGRMSLASFYNPGSD 212
+GD +E +TN S HRVV+ + G R S F + SD
Sbjct: 231 IGDXLERLTNNVLPSTVHRVVNPPPERRGVPRYSTPFFLHFASD 274
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 63/117 (53%), Gaps = 7/117 (5%)
Query: 105 ANGPTFGTKVSNYPPCPKPDLIKGLRA--HTDAGGIILLFQDDKVSGLQL-LKDGQWIDV 161
AN ++ +YPP + +RA H D I +L ++ GLQ+ KDG W+DV
Sbjct: 145 ANSHKTLLRILHYPPXTGDEEXGAIRAAAHEDINLITVLPTANE-PGLQVKAKDGSWLDV 203
Query: 162 PPLRHSIVVNLGDQIEVITNGKYKSVEHRVVS--QTD-GEGRMSLASFYNPGSDAVI 215
P +I++N+GD ++ ++G + S HRV++ TD + R+SL F +P V+
Sbjct: 204 PSDFGNIIINIGDXLQEASDGYFPSTSHRVINPEGTDKTKSRISLPLFLHPHPSVVL 260
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 132 HTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRV 191
H D I +L+Q + V LQ+ + D+ ++N G + +TN YK+ HR
Sbjct: 214 HEDVSLITVLYQSN-VQNLQVETAAGYQDIEADDTGYLINCGSYMAHLTNNYYKAPIHR- 271
Query: 192 VSQTDGEGRMSLASFYNPGSDAVIYP 217
V + E R SL F N G D+VI P
Sbjct: 272 VKWVNAE-RQSLPFFVNLGYDSVIDP 296
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 132 HTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRV 191
H D I +L+Q + V LQ+ + D+ ++N G + +TN YK+ HR
Sbjct: 214 HEDVSLITVLYQSN-VQNLQVETAAGYQDIEADDTGYLINCGSYMAHLTNNYYKAPIHR- 271
Query: 192 VSQTDGEGRMSLASFYNPGSDAVIYP 217
V + E R SL F N G D+VI P
Sbjct: 272 VKWVNAE-RQSLPFFVNLGYDSVIDP 296
>pdb|1E5H|A Chain A, Delta-R307a Deacetoxycephalosporin C Synthase Complexed
With Succinate And Carbon Dioxide
Length = 308
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 7/88 (7%)
Query: 132 HTDAGGIILLFQDDKVSG---LQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVE 188
H D + L+ Q +G LQ G + D+P +++V G ++T G+ K+
Sbjct: 183 HYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPYRPDAVLVFCGAIATLVTGGQVKAPR 242
Query: 189 HRVVS----QTDGEGRMSLASFYNPGSD 212
H V + Q G R S F P +D
Sbjct: 243 HHVAAPRRDQIAGSSRTSSVFFLRPNAD 270
>pdb|1UNB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Ampicillin
pdb|1UO9|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Succinate
pdb|1UOB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Penicillin G
pdb|1UOF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Penicillin G
pdb|1UOG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Deacetoxycephalosporin C
pdb|1DCS|A Chain A, Deacetoxycephalosporin C Synthase From S. Clavuligerus
pdb|1RXF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
pdb|1RXG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
And 2- Oxoglutarate
pdb|2JB8|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
5-hydroxy- 4-keto Valeric Acid
Length = 311
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 7/88 (7%)
Query: 132 HTDAGGIILLFQDDKVSG---LQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVE 188
H D + L+ Q +G LQ G + D+P +++V G ++T G+ K+
Sbjct: 183 HYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPYRPDAVLVFCGAIATLVTGGQVKAPR 242
Query: 189 HRVVS----QTDGEGRMSLASFYNPGSD 212
H V + Q G R S F P +D
Sbjct: 243 HHVAAPRRDQIAGSSRTSSVFFLRPNAD 270
>pdb|1E5I|A Chain A, Delta-R306 Deacetoxycephalosporin C Synthase Complexed
With Iron And 2-Oxoglutarate
Length = 306
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 7/88 (7%)
Query: 132 HTDAGGIILLFQDDKVSG---LQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVE 188
H D + L+ Q +G LQ G + D+P +++V G ++T G+ K+
Sbjct: 183 HYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPYRPDAVLVFCGAIATLVTGGQVKAPR 242
Query: 189 HRVVS----QTDGEGRMSLASFYNPGSD 212
H V + Q G R S F P +D
Sbjct: 243 HHVAAPRRDQIAGSSRTSSVFFLRPNAD 270
>pdb|1W28|A Chain A, Conformational Flexibility Of The C-Terminus With
Implications For Substrate Binding And Catalysis In A
New Crystal Form Of Deacetoxycephalosporin C Synthase
pdb|1W2A|X Chain X, Deacetoxycephalosporin C Synthase (With His-Tag) Complexed
With Fe(Ii) And Ethylene Glycol
pdb|1W2N|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Ampicillin
pdb|1W2O|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Deacetoxycephalosporin C
Length = 331
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 7/88 (7%)
Query: 132 HTDAGGIILLFQDDKVSG---LQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVE 188
H D + L+ Q +G LQ G + D+P +++V G ++T G+ K+
Sbjct: 203 HYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPYRPDAVLVFCGAIATLVTGGQVKAPR 262
Query: 189 HRVVS----QTDGEGRMSLASFYNPGSD 212
H V + Q G R S F P +D
Sbjct: 263 HHVAAPRRDQIAGSSRTSSVFFLRPNAD 290
>pdb|1HJF|A Chain A, Alteration Of The Co-Substrate Selectivity Of
Deacetoxycephalosporin C Synthase: The Role Of
Arginine-258
pdb|1HJG|A Chain A, Alteration Of The Co-Substrate Selectivity Of
Deacetoxycephalosporin C Synthase: The Role Of
Arginine-258
Length = 311
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 7/88 (7%)
Query: 132 HTDAGGIILLFQDDKVSG---LQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVE 188
H D + L+ Q +G LQ G + D+P +++V G ++T G+ K+
Sbjct: 183 HYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPYRPDAVLVFCGAIATLVTGGQVKAPR 242
Query: 189 HRVVS----QTDGEGRMSLASFYNPGSD 212
H V + Q G + S F P +D
Sbjct: 243 HHVAAPRRDQIAGSSQTSSVFFLRPNAD 270
>pdb|3L8F|A Chain A, Crystal Structure Of D,D-Heptose 1.7-Bisphosphate
Phosphatase From E. Coli Complexed With Magnesium And
Phosphate
pdb|3L8G|A Chain A, Crystal Structure Of D,D-Heptose 1.7-Bisphosphate
Phosphatase From E. Coli Complexed With
D-Glycero-D-Manno- Heptose 1 ,7-Bisphosphate
Length = 187
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 9/68 (13%)
Query: 4 FPVISLENINGAERAAILEKINEACENWGFFEV--NDMDWESTFYVRHLPQSTINEVPDL 61
F ++ + N +G R E E W + + D+D + +Y H PQ ++
Sbjct: 47 FALVVVTNQSGIARGKFTEAQFETLTEWXDWSLADRDVDLDGIYYCPHHPQGSV------ 100
Query: 62 DEEYRKVM 69
EE+R+V
Sbjct: 101 -EEFRQVC 107
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.137 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,991,870
Number of Sequences: 62578
Number of extensions: 314860
Number of successful extensions: 747
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 732
Number of HSP's gapped (non-prelim): 22
length of query: 274
length of database: 14,973,337
effective HSP length: 97
effective length of query: 177
effective length of database: 8,903,271
effective search space: 1575878967
effective search space used: 1575878967
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)