Query 024021
Match_columns 274
No_of_seqs 191 out of 3120
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 08:20:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024021.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024021hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03840 TMPT_Se_Te thiopurin 99.9 1E-22 2.2E-27 165.2 19.7 175 77-252 2-191 (213)
2 PRK13255 thiopurine S-methyltr 99.9 7E-22 1.5E-26 160.9 19.7 179 75-254 3-196 (218)
3 PRK13256 thiopurine S-methyltr 99.9 4.6E-22 9.9E-27 161.2 18.4 174 74-248 8-197 (226)
4 PF05724 TPMT: Thiopurine S-me 99.9 3.1E-22 6.6E-27 162.6 14.0 174 75-250 3-192 (218)
5 PRK11207 tellurite resistance 99.9 6.2E-21 1.3E-25 153.7 17.4 154 91-249 15-171 (197)
6 PLN02244 tocopherol O-methyltr 99.9 3.6E-20 7.7E-25 161.2 20.7 190 60-252 55-282 (340)
7 PF01209 Ubie_methyltran: ubiE 99.8 7.2E-21 1.6E-25 156.4 11.3 149 97-250 38-222 (233)
8 PRK11036 putative S-adenosyl-L 99.8 5.4E-20 1.2E-24 154.3 15.2 149 98-248 34-207 (255)
9 COG2230 Cfa Cyclopropane fatty 99.8 6.5E-20 1.4E-24 151.9 14.0 197 65-269 29-239 (283)
10 PF03848 TehB: Tellurite resis 99.8 1.6E-19 3.5E-24 142.5 15.2 166 76-254 7-175 (192)
11 PTZ00098 phosphoethanolamine N 99.8 3E-19 6.5E-24 150.1 17.4 172 73-250 19-204 (263)
12 COG2226 UbiE Methylase involve 99.8 1.8E-19 4E-24 146.7 15.3 138 108-248 51-224 (238)
13 TIGR00477 tehB tellurite resis 99.8 6.6E-19 1.4E-23 141.6 17.4 154 95-254 19-175 (195)
14 KOG2361 Predicted methyltransf 99.8 3.2E-20 7E-25 147.6 9.3 200 71-274 32-264 (264)
15 PF02353 CMAS: Mycolic acid cy 99.8 2.5E-19 5.4E-24 150.5 14.6 165 98-270 51-234 (273)
16 PLN02396 hexaprenyldihydroxybe 99.8 3.4E-19 7.5E-24 152.6 15.0 141 108-250 131-291 (322)
17 PF12847 Methyltransf_18: Meth 99.8 3.9E-19 8.5E-24 130.2 12.1 106 108-213 1-111 (112)
18 PLN02233 ubiquinone biosynthes 99.8 1.3E-18 2.8E-23 146.1 16.5 141 107-249 72-249 (261)
19 PRK15451 tRNA cmo(5)U34 methyl 99.8 1.6E-18 3.4E-23 144.6 14.5 108 106-214 54-165 (247)
20 PRK12335 tellurite resistance 99.8 6.5E-18 1.4E-22 143.9 17.6 150 95-250 109-261 (287)
21 TIGR00452 methyltransferase, p 99.8 7.2E-18 1.6E-22 143.9 16.1 145 106-252 119-277 (314)
22 smart00828 PKS_MT Methyltransf 99.8 5.1E-18 1.1E-22 139.7 14.6 142 110-253 1-149 (224)
23 PRK15068 tRNA mo(5)U34 methylt 99.8 7.8E-18 1.7E-22 145.1 15.9 145 106-252 120-278 (322)
24 COG2227 UbiG 2-polyprenyl-3-me 99.8 1.8E-18 3.8E-23 138.7 10.6 138 107-248 58-215 (243)
25 TIGR00740 methyltransferase, p 99.8 1.5E-17 3.2E-22 138.2 16.3 138 107-245 52-224 (239)
26 TIGR02752 MenG_heptapren 2-hep 99.8 2.4E-17 5.1E-22 136.4 16.6 150 99-251 35-221 (231)
27 PRK14103 trans-aconitate 2-met 99.8 3.3E-17 7.1E-22 137.5 15.6 157 99-267 19-201 (255)
28 TIGR02021 BchM-ChlM magnesium 99.7 6.4E-17 1.4E-21 132.7 15.7 145 107-253 54-211 (219)
29 PF13489 Methyltransf_23: Meth 99.7 2.2E-17 4.8E-22 128.6 12.3 135 97-245 12-160 (161)
30 PLN02336 phosphoethanolamine N 99.7 4.5E-17 9.7E-22 148.5 15.4 169 76-251 236-417 (475)
31 PLN02585 magnesium protoporphy 99.7 2.7E-16 5.9E-21 134.4 18.8 185 62-250 89-301 (315)
32 KOG1271 Methyltransferases [Ge 99.7 4.1E-17 9E-22 124.3 11.7 163 76-249 19-206 (227)
33 PRK07580 Mg-protoporphyrin IX 99.7 3.6E-16 7.7E-21 129.2 17.6 188 63-252 10-218 (230)
34 KOG1540 Ubiquinone biosynthesi 99.7 2.1E-16 4.6E-21 126.8 14.8 137 107-245 99-278 (296)
35 TIGR02716 C20_methyl_CrtF C-20 99.7 2.2E-16 4.8E-21 135.9 15.9 136 108-246 149-304 (306)
36 PF08241 Methyltransf_11: Meth 99.7 6.9E-17 1.5E-21 114.3 10.6 93 113-211 1-95 (95)
37 PF08003 Methyltransf_9: Prote 99.7 1.8E-16 3.9E-21 131.6 14.3 144 106-251 113-270 (315)
38 TIGR00537 hemK_rel_arch HemK-r 99.7 6E-16 1.3E-20 122.9 16.7 135 107-254 18-171 (179)
39 PF05401 NodS: Nodulation prot 99.7 1.1E-16 2.5E-21 124.9 12.0 133 110-247 45-178 (201)
40 PRK00107 gidB 16S rRNA methylt 99.7 1E-16 2.3E-21 127.3 12.0 134 109-262 46-181 (187)
41 PF13847 Methyltransf_31: Meth 99.7 1.3E-16 2.9E-21 123.3 11.9 105 108-215 3-112 (152)
42 KOG1270 Methyltransferases [Co 99.7 2.3E-17 4.9E-22 133.2 7.5 136 109-248 90-249 (282)
43 COG4106 Tam Trans-aconitate me 99.7 2E-16 4.3E-21 124.0 12.4 157 106-272 28-208 (257)
44 PRK11705 cyclopropane fatty ac 99.7 8.4E-16 1.8E-20 135.4 17.7 152 107-270 166-329 (383)
45 PRK01683 trans-aconitate 2-met 99.7 1.1E-15 2.4E-20 128.4 16.8 159 100-268 22-205 (258)
46 PRK10258 biotin biosynthesis p 99.7 1.4E-15 3E-20 127.4 17.2 128 108-243 42-182 (251)
47 PRK11873 arsM arsenite S-adeno 99.7 9E-16 1.9E-20 130.0 15.8 140 107-249 76-231 (272)
48 PLN02490 MPBQ/MSBQ methyltrans 99.7 6.3E-16 1.4E-20 133.0 14.6 137 108-250 113-258 (340)
49 TIGR00138 gidB 16S rRNA methyl 99.7 7.2E-16 1.6E-20 122.2 13.4 128 107-252 41-173 (181)
50 PF13649 Methyltransf_25: Meth 99.7 3E-16 6.5E-21 112.8 7.7 94 112-207 1-101 (101)
51 PRK14968 putative methyltransf 99.7 7.4E-15 1.6E-19 117.4 16.2 135 107-251 22-176 (188)
52 TIGR03587 Pse_Me-ase pseudamin 99.7 5.4E-15 1.2E-19 119.5 15.2 101 107-215 42-144 (204)
53 PRK08287 cobalt-precorrin-6Y C 99.7 4.6E-15 9.9E-20 118.7 14.6 126 107-249 30-157 (187)
54 PRK00216 ubiE ubiquinone/menaq 99.6 3E-15 6.4E-20 124.2 13.3 141 108-250 51-227 (239)
55 COG4123 Predicted O-methyltran 99.6 6.4E-15 1.4E-19 120.2 14.4 135 109-254 45-200 (248)
56 PLN02336 phosphoethanolamine N 99.6 4.8E-15 1.1E-19 135.1 15.3 137 108-247 37-181 (475)
57 PRK14967 putative methyltransf 99.6 2.1E-14 4.6E-19 118.0 17.1 147 97-255 24-191 (223)
58 COG2264 PrmA Ribosomal protein 99.6 4.2E-15 9.2E-20 124.3 12.8 137 98-249 152-289 (300)
59 PRK00517 prmA ribosomal protei 99.6 7.1E-15 1.5E-19 122.8 14.2 121 106-248 117-238 (250)
60 TIGR02072 BioC biotin biosynth 99.6 9.2E-15 2E-19 121.3 14.6 136 108-252 34-180 (240)
61 PRK08317 hypothetical protein; 99.6 2.6E-14 5.6E-19 118.5 17.2 146 107-256 18-184 (241)
62 TIGR03534 RF_mod_PrmC protein- 99.6 2.3E-14 5E-19 119.9 16.7 140 97-248 76-241 (251)
63 PF05175 MTS: Methyltransferas 99.6 7.9E-15 1.7E-19 115.4 13.0 106 108-214 31-141 (170)
64 TIGR00406 prmA ribosomal prote 99.6 1.4E-14 2.9E-19 123.5 14.8 132 100-248 151-283 (288)
65 PRK05134 bifunctional 3-demeth 99.6 1.1E-14 2.4E-19 120.5 13.8 139 106-248 46-205 (233)
66 PF06325 PrmA: Ribosomal prote 99.6 5.1E-15 1.1E-19 125.0 11.2 132 98-248 151-283 (295)
67 PLN03075 nicotianamine synthas 99.6 1.2E-14 2.7E-19 122.0 13.4 137 76-213 80-233 (296)
68 PF08242 Methyltransf_12: Meth 99.6 7.8E-17 1.7E-21 115.4 -0.4 95 113-209 1-99 (99)
69 PRK00121 trmB tRNA (guanine-N( 99.6 7.6E-15 1.6E-19 118.7 11.0 126 108-244 40-177 (202)
70 PRK06202 hypothetical protein; 99.6 1.5E-14 3.3E-19 119.7 13.0 138 107-251 59-225 (232)
71 TIGR01983 UbiG ubiquinone bios 99.6 3.1E-14 6.7E-19 117.1 14.4 138 108-248 45-203 (224)
72 TIGR03533 L3_gln_methyl protei 99.6 4.3E-14 9.4E-19 120.0 15.4 129 108-248 121-274 (284)
73 TIGR01934 MenG_MenH_UbiE ubiqu 99.6 4.8E-14 1E-18 115.7 14.4 138 108-250 39-212 (223)
74 PRK04266 fibrillarin; Provisio 99.6 6.6E-14 1.4E-18 114.6 14.9 134 107-249 71-211 (226)
75 PF13659 Methyltransf_26: Meth 99.6 1.5E-14 3.2E-19 106.7 9.1 105 109-213 1-115 (117)
76 PRK00377 cbiT cobalt-precorrin 99.6 1.1E-13 2.4E-18 111.7 14.9 123 106-243 38-165 (198)
77 PF05891 Methyltransf_PK: AdoM 99.6 7.1E-14 1.5E-18 111.2 13.3 139 110-249 57-202 (218)
78 PRK15001 SAM-dependent 23S rib 99.6 9.1E-14 2E-18 121.4 15.2 105 109-213 229-340 (378)
79 PRK14966 unknown domain/N5-glu 99.6 3.5E-13 7.5E-18 118.0 18.6 127 108-247 251-404 (423)
80 PRK05785 hypothetical protein; 99.6 4.5E-14 9.7E-19 116.1 11.7 88 108-206 51-140 (226)
81 smart00138 MeTrc Methyltransfe 99.6 1.4E-14 3.1E-19 121.6 8.7 105 109-213 100-242 (264)
82 PRK11805 N5-glutamine S-adenos 99.6 1.4E-13 3.1E-18 117.9 14.9 127 110-248 135-286 (307)
83 TIGR01177 conserved hypothetic 99.6 1E-13 2.3E-18 120.3 14.2 127 107-248 181-315 (329)
84 PRK11088 rrmA 23S rRNA methylt 99.5 1.9E-13 4.2E-18 115.7 15.4 141 108-270 85-238 (272)
85 PRK09328 N5-glutamine S-adenos 99.5 4.2E-13 9E-18 113.9 17.2 128 107-246 107-260 (275)
86 COG2519 GCD14 tRNA(1-methylade 99.5 8.5E-14 1.8E-18 112.7 12.2 125 106-247 92-219 (256)
87 PRK13944 protein-L-isoaspartat 99.5 1.1E-13 2.4E-18 112.2 12.9 99 107-213 71-173 (205)
88 TIGR03438 probable methyltrans 99.5 2.2E-13 4.9E-18 116.7 15.5 104 108-211 63-175 (301)
89 TIGR00536 hemK_fam HemK family 99.5 3.7E-13 8E-18 114.6 16.7 126 110-246 116-267 (284)
90 PRK06922 hypothetical protein; 99.5 8.3E-14 1.8E-18 127.2 12.5 106 107-214 417-538 (677)
91 PRK01544 bifunctional N5-gluta 99.5 1.8E-13 3.9E-18 124.8 14.7 127 109-246 139-291 (506)
92 COG2242 CobL Precorrin-6B meth 99.5 5.7E-13 1.2E-17 103.4 15.1 124 106-246 32-159 (187)
93 PHA03411 putative methyltransf 99.5 3.8E-13 8.3E-18 111.4 14.9 140 93-245 50-211 (279)
94 TIGR02469 CbiT precorrin-6Y C5 99.5 1.9E-13 4.1E-18 101.6 12.0 100 108-213 19-122 (124)
95 KOG1541 Predicted protein carb 99.5 3.6E-13 7.9E-18 106.0 12.8 128 109-250 51-189 (270)
96 PF07021 MetW: Methionine bios 99.5 4.3E-13 9.2E-18 104.8 12.7 135 106-253 11-172 (193)
97 COG2890 HemK Methylase of poly 99.5 8.6E-13 1.9E-17 111.5 15.3 124 111-247 113-262 (280)
98 TIGR00091 tRNA (guanine-N(7)-) 99.5 1.7E-13 3.7E-18 110.1 10.6 128 108-246 16-156 (194)
99 PTZ00146 fibrillarin; Provisio 99.5 5.4E-13 1.2E-17 111.7 13.9 132 107-250 131-273 (293)
100 TIGR02081 metW methionine bios 99.5 7.9E-13 1.7E-17 106.4 13.8 133 108-253 13-172 (194)
101 TIGR00080 pimt protein-L-isoas 99.5 6.4E-13 1.4E-17 108.6 12.2 98 107-213 76-177 (215)
102 PRK13942 protein-L-isoaspartat 99.5 7.4E-13 1.6E-17 107.8 12.5 98 107-213 75-176 (212)
103 TIGR03704 PrmC_rel_meth putati 99.5 1.7E-12 3.6E-17 108.4 14.7 126 110-250 88-242 (251)
104 COG2518 Pcm Protein-L-isoaspar 99.5 7.2E-13 1.6E-17 105.1 11.8 105 101-214 64-170 (209)
105 PRK09489 rsmC 16S ribosomal RN 99.5 1.6E-12 3.4E-17 112.9 14.8 103 109-214 197-304 (342)
106 COG4976 Predicted methyltransf 99.5 5.3E-14 1.2E-18 111.3 4.9 147 97-251 113-268 (287)
107 PF00891 Methyltransf_2: O-met 99.5 6.4E-13 1.4E-17 110.6 11.2 100 110-219 102-205 (241)
108 KOG4300 Predicted methyltransf 99.4 5.6E-13 1.2E-17 104.0 9.6 136 110-248 78-232 (252)
109 PRK00312 pcm protein-L-isoaspa 99.4 2.3E-12 5E-17 105.1 13.6 129 77-214 43-176 (212)
110 COG2813 RsmC 16S RNA G1207 met 99.4 3.4E-12 7.4E-17 106.4 13.8 124 89-214 138-267 (300)
111 PRK11188 rrmJ 23S rRNA methylt 99.4 7.6E-12 1.6E-16 101.6 13.8 119 107-248 50-189 (209)
112 PRK07402 precorrin-6B methylas 99.4 7.7E-12 1.7E-16 100.8 13.1 124 107-247 39-169 (196)
113 COG2263 Predicted RNA methylas 99.4 2.9E-11 6.2E-16 93.7 14.9 131 106-254 43-174 (198)
114 PRK11783 rlmL 23S rRNA m(2)G24 99.4 5.2E-12 1.1E-16 119.7 13.0 132 108-250 538-682 (702)
115 PRK15128 23S rRNA m(5)C1962 me 99.4 8.1E-12 1.8E-16 110.4 13.0 131 108-247 220-368 (396)
116 PLN02781 Probable caffeoyl-CoA 99.4 5.6E-12 1.2E-16 104.1 11.1 102 107-213 67-178 (234)
117 PF08704 GCD14: tRNA methyltra 99.4 4.3E-12 9.3E-17 104.6 9.9 126 106-248 38-171 (247)
118 PRK14121 tRNA (guanine-N(7)-)- 99.4 1.1E-11 2.3E-16 108.1 12.8 105 107-213 121-235 (390)
119 PF01135 PCMT: Protein-L-isoas 99.3 5.3E-12 1.1E-16 102.0 9.3 107 99-214 62-173 (209)
120 cd02440 AdoMet_MTases S-adenos 99.3 2.5E-11 5.3E-16 86.4 11.8 100 111-212 1-103 (107)
121 PLN02232 ubiquinone biosynthes 99.3 6.5E-12 1.4E-16 97.8 9.1 114 134-249 1-148 (160)
122 PHA03412 putative methyltransf 99.3 3.3E-11 7.2E-16 97.7 13.2 129 108-243 49-197 (241)
123 PLN02672 methionine S-methyltr 99.3 3.7E-11 8E-16 116.5 15.9 131 109-250 119-305 (1082)
124 PRK13168 rumA 23S rRNA m(5)U19 99.3 3.2E-11 7E-16 108.9 13.8 140 107-265 296-440 (443)
125 PRK04457 spermidine synthase; 99.3 1.3E-11 2.9E-16 103.6 10.5 108 108-215 66-179 (262)
126 PF12147 Methyltransf_20: Puta 99.3 7E-11 1.5E-15 97.5 14.4 140 108-247 135-297 (311)
127 PF03291 Pox_MCEL: mRNA cappin 99.3 1.7E-11 3.7E-16 105.7 11.2 144 108-251 62-270 (331)
128 PLN02476 O-methyltransferase 99.3 5E-11 1.1E-15 99.8 13.3 102 107-213 117-228 (278)
129 COG4122 Predicted O-methyltran 99.3 2.9E-11 6.2E-16 97.4 11.0 119 88-213 41-166 (219)
130 PRK03522 rumB 23S rRNA methylu 99.3 9.1E-11 2E-15 101.3 13.9 139 107-265 172-312 (315)
131 PRK14904 16S rRNA methyltransf 99.3 1E-10 2.2E-15 105.6 14.8 132 106-245 248-403 (445)
132 PF06080 DUF938: Protein of un 99.3 9.1E-11 2E-15 93.1 12.6 138 111-248 28-192 (204)
133 PRK00811 spermidine synthase; 99.3 5.6E-11 1.2E-15 101.0 12.2 106 108-213 76-191 (283)
134 PF01596 Methyltransf_3: O-met 99.3 2.8E-11 6.1E-16 97.4 9.3 102 107-213 44-155 (205)
135 KOG1975 mRNA cap methyltransfe 99.3 4.2E-11 9.2E-16 99.6 10.4 151 101-251 110-320 (389)
136 PRK10901 16S rRNA methyltransf 99.3 2.4E-10 5.1E-15 102.8 16.1 131 106-245 242-398 (427)
137 TIGR00438 rrmJ cell division p 99.3 1.1E-10 2.3E-15 93.5 12.0 117 107-246 31-168 (188)
138 KOG3191 Predicted N6-DNA-methy 99.2 2.8E-10 6E-15 87.3 13.5 130 109-250 44-195 (209)
139 PRK13943 protein-L-isoaspartat 99.2 1.1E-10 2.3E-15 100.4 12.1 105 100-213 71-180 (322)
140 PRK01581 speE spermidine synth 99.2 2.3E-10 5.1E-15 98.5 14.1 140 107-253 149-302 (374)
141 KOG1499 Protein arginine N-met 99.2 3.9E-11 8.5E-16 101.5 8.6 104 106-210 58-164 (346)
142 TIGR02085 meth_trns_rumB 23S r 99.2 1.4E-10 3E-15 102.4 12.6 138 107-264 232-371 (374)
143 PRK10909 rsmD 16S rRNA m(2)G96 99.2 2.5E-10 5.4E-15 91.6 12.7 106 107-216 52-162 (199)
144 smart00650 rADc Ribosomal RNA 99.2 1.6E-10 3.6E-15 90.8 11.4 97 107-211 12-111 (169)
145 PRK03612 spermidine synthase; 99.2 1.3E-10 2.8E-15 106.8 12.2 133 107-245 296-441 (521)
146 PRK14902 16S rRNA methyltransf 99.2 4.3E-10 9.3E-15 101.7 15.4 133 107-247 249-407 (444)
147 PRK14903 16S rRNA methyltransf 99.2 5.1E-10 1.1E-14 100.5 15.4 133 106-246 235-393 (431)
148 TIGR00563 rsmB ribosomal RNA s 99.2 4.5E-10 9.8E-15 101.0 15.2 130 106-242 236-391 (426)
149 PRK14901 16S rRNA methyltransf 99.2 3.9E-10 8.5E-15 101.6 14.6 131 106-244 250-409 (434)
150 PLN02589 caffeoyl-CoA O-methyl 99.2 1.5E-10 3.2E-15 95.7 10.1 101 107-212 78-189 (247)
151 PF01739 CheR: CheR methyltran 99.2 5.8E-11 1.3E-15 94.9 7.4 105 109-213 32-175 (196)
152 COG2521 Predicted archaeal met 99.2 1.3E-10 2.9E-15 92.5 9.3 139 108-249 134-278 (287)
153 TIGR00479 rumA 23S rRNA (uraci 99.2 3.5E-10 7.5E-15 102.0 12.8 126 108-250 292-422 (431)
154 KOG2899 Predicted methyltransf 99.2 4.4E-10 9.5E-15 90.1 11.3 154 95-250 46-257 (288)
155 COG1041 Predicted DNA modifica 99.2 8.2E-10 1.8E-14 94.0 13.3 143 92-250 179-332 (347)
156 KOG3010 Methyltransferase [Gen 99.1 1.2E-10 2.7E-15 93.3 7.5 103 110-215 35-139 (261)
157 PF02390 Methyltransf_4: Putat 99.1 5.2E-10 1.1E-14 89.7 10.9 125 110-245 19-157 (195)
158 PLN02366 spermidine synthase 99.1 8.8E-10 1.9E-14 94.3 12.8 107 107-213 90-206 (308)
159 KOG1500 Protein arginine N-met 99.1 7.2E-10 1.6E-14 92.8 11.8 105 106-212 175-281 (517)
160 PRK11727 23S rRNA mA1618 methy 99.1 7.5E-10 1.6E-14 94.8 12.3 140 109-248 115-292 (321)
161 PF05185 PRMT5: PRMT5 arginine 99.1 2.5E-10 5.4E-15 102.3 9.6 102 109-210 187-294 (448)
162 TIGR00417 speE spermidine synt 99.1 6.9E-10 1.5E-14 93.8 11.6 105 108-212 72-185 (270)
163 PF10294 Methyltransf_16: Puta 99.1 4.7E-10 1E-14 88.4 9.7 105 106-213 43-156 (173)
164 KOG3178 Hydroxyindole-O-methyl 99.1 1.2E-09 2.6E-14 92.6 12.7 136 110-252 179-334 (342)
165 COG1092 Predicted SAM-dependen 99.1 1.1E-09 2.3E-14 95.9 12.7 134 109-247 218-365 (393)
166 TIGR00446 nop2p NOL1/NOP2/sun 99.1 1.7E-09 3.6E-14 91.2 13.5 110 106-216 69-202 (264)
167 PF05219 DREV: DREV methyltran 99.1 1.6E-09 3.4E-14 88.5 12.7 135 109-254 95-246 (265)
168 PF05148 Methyltransf_8: Hypot 99.1 7.7E-10 1.7E-14 87.4 9.7 141 78-248 44-185 (219)
169 PF07942 N2227: N2227-like pro 99.1 7.2E-09 1.6E-13 86.3 15.8 138 109-248 57-242 (270)
170 PF01170 UPF0020: Putative RNA 99.1 3.3E-09 7.2E-14 84.0 13.1 127 107-248 27-171 (179)
171 TIGR00095 RNA methyltransferas 99.1 2.3E-09 5E-14 85.6 12.0 104 107-213 48-159 (189)
172 PRK10611 chemotaxis methyltran 99.1 5.6E-10 1.2E-14 94.2 8.7 105 109-213 116-262 (287)
173 PF10672 Methyltrans_SAM: S-ad 99.1 1.2E-09 2.5E-14 92.0 10.4 126 108-242 123-258 (286)
174 KOG2904 Predicted methyltransf 99.0 5.8E-09 1.3E-13 85.2 11.9 106 108-213 148-285 (328)
175 COG1352 CheR Methylase of chem 99.0 4.7E-09 1E-13 87.5 11.7 105 109-213 97-241 (268)
176 PRK05031 tRNA (uracil-5-)-meth 99.0 5.5E-09 1.2E-13 91.8 12.6 135 109-265 207-359 (362)
177 PF03602 Cons_hypoth95: Conser 99.0 1.3E-09 2.9E-14 86.4 7.8 108 107-216 41-156 (183)
178 PF01234 NNMT_PNMT_TEMT: NNMT/ 99.0 4.2E-09 9.1E-14 87.1 10.8 146 102-247 50-238 (256)
179 COG3963 Phospholipid N-methylt 99.0 8.5E-09 1.8E-13 78.2 11.3 112 100-217 39-160 (194)
180 KOG1661 Protein-L-isoaspartate 99.0 3.7E-09 8E-14 83.1 9.4 111 95-213 69-193 (237)
181 KOG3045 Predicted RNA methylas 98.9 8.3E-09 1.8E-13 83.6 10.2 110 109-248 181-291 (325)
182 PF02475 Met_10: Met-10+ like- 98.9 5.4E-09 1.2E-13 83.7 9.2 99 106-210 99-199 (200)
183 PF04816 DUF633: Family of unk 98.9 1.8E-08 3.9E-13 81.1 12.1 121 112-248 1-124 (205)
184 KOG2940 Predicted methyltransf 98.9 1.3E-09 2.8E-14 86.7 4.6 139 108-251 72-230 (325)
185 TIGR02143 trmA_only tRNA (urac 98.9 2.6E-08 5.6E-13 87.3 12.9 137 109-266 198-351 (353)
186 PTZ00338 dimethyladenosine tra 98.9 1.5E-08 3.2E-13 86.3 11.1 89 98-187 25-114 (294)
187 PF09445 Methyltransf_15: RNA 98.9 2.1E-09 4.5E-14 82.8 4.9 75 111-185 2-80 (163)
188 KOG1663 O-methyltransferase [S 98.9 7.4E-08 1.6E-12 77.1 13.7 111 96-213 63-183 (237)
189 COG0220 Predicted S-adenosylme 98.9 1.9E-08 4.1E-13 82.1 10.4 102 110-213 50-164 (227)
190 TIGR00478 tly hemolysin TlyA f 98.9 5.6E-08 1.2E-12 79.5 12.7 137 98-252 63-221 (228)
191 COG2265 TrmA SAM-dependent met 98.8 7.5E-08 1.6E-12 86.0 13.9 126 108-250 293-422 (432)
192 PRK14896 ksgA 16S ribosomal RN 98.8 2.9E-08 6.2E-13 83.4 10.6 86 97-186 17-103 (258)
193 PRK00274 ksgA 16S ribosomal RN 98.8 8.1E-08 1.7E-12 81.3 13.3 85 97-185 30-116 (272)
194 PF02527 GidB: rRNA small subu 98.8 4E-08 8.6E-13 77.8 10.6 128 110-252 50-179 (184)
195 COG0742 N6-adenine-specific me 98.8 1E-07 2.3E-12 74.7 12.6 108 107-214 42-155 (187)
196 PRK04148 hypothetical protein; 98.8 5.4E-08 1.2E-12 72.3 10.5 94 108-216 16-112 (134)
197 PLN02823 spermine synthase 98.8 4.4E-08 9.5E-13 84.8 11.5 105 108-213 103-220 (336)
198 COG2520 Predicted methyltransf 98.8 9E-08 1.9E-12 82.2 12.8 130 107-246 187-318 (341)
199 TIGR00755 ksgA dimethyladenosi 98.8 1.1E-07 2.4E-12 79.7 12.7 87 95-185 15-105 (253)
200 PF11968 DUF3321: Putative met 98.8 1E-07 2.2E-12 76.0 11.6 119 110-248 53-181 (219)
201 KOG2915 tRNA(1-methyladenosine 98.8 1.3E-07 2.9E-12 77.3 11.5 135 98-250 97-237 (314)
202 PF09243 Rsm22: Mitochondrial 98.7 1.1E-07 2.4E-12 80.4 11.0 139 106-252 31-172 (274)
203 TIGR03439 methyl_EasF probable 98.7 7E-07 1.5E-11 76.7 15.7 105 108-212 76-196 (319)
204 PF01564 Spermine_synth: Sperm 98.7 1.4E-07 3E-12 78.5 11.0 129 107-241 75-213 (246)
205 PF03141 Methyltransf_29: Puta 98.7 1.2E-08 2.6E-13 90.3 4.4 132 110-248 119-253 (506)
206 KOG3420 Predicted RNA methylas 98.7 3.3E-08 7.1E-13 73.2 5.2 79 106-186 46-126 (185)
207 PRK04338 N(2),N(2)-dimethylgua 98.7 8.9E-08 1.9E-12 84.5 8.2 98 109-213 58-158 (382)
208 KOG0820 Ribosomal RNA adenine 98.7 2.6E-07 5.7E-12 75.6 10.1 88 98-186 47-135 (315)
209 COG0357 GidB Predicted S-adeno 98.6 2.3E-07 5E-12 74.7 9.7 132 109-255 68-202 (215)
210 PRK00536 speE spermidine synth 98.6 1.1E-06 2.4E-11 73.2 13.4 122 107-246 71-197 (262)
211 PF05958 tRNA_U5-meth_tr: tRNA 98.6 1.1E-06 2.4E-11 77.0 13.3 142 103-265 191-349 (352)
212 COG0030 KsgA Dimethyladenosine 98.6 7.6E-07 1.7E-11 73.7 11.4 86 98-186 19-107 (259)
213 COG1189 Predicted rRNA methyla 98.6 5.9E-07 1.3E-11 72.5 10.3 150 106-268 77-242 (245)
214 KOG2730 Methylase [General fun 98.6 9.2E-08 2E-12 75.8 5.5 98 108-207 94-196 (263)
215 COG0421 SpeE Spermidine syntha 98.6 5.9E-07 1.3E-11 75.8 10.7 104 110-213 78-190 (282)
216 PRK01544 bifunctional N5-gluta 98.6 4.4E-07 9.5E-12 83.2 10.7 103 109-213 348-462 (506)
217 KOG2798 Putative trehalase [Ca 98.6 1.6E-06 3.5E-11 72.4 12.7 146 109-256 151-345 (369)
218 COG0116 Predicted N6-adenine-s 98.5 1.4E-06 3.1E-11 75.4 11.4 107 107-213 190-344 (381)
219 COG4262 Predicted spermidine s 98.5 2E-06 4.4E-11 73.3 12.0 137 110-255 291-443 (508)
220 PRK11933 yebU rRNA (cytosine-C 98.5 5.5E-06 1.2E-10 74.9 14.4 110 106-216 111-245 (470)
221 PF04672 Methyltransf_19: S-ad 98.5 2.4E-06 5.2E-11 70.8 11.1 133 110-245 70-233 (267)
222 PF02384 N6_Mtase: N-6 DNA Met 98.4 1.1E-06 2.3E-11 76.0 9.3 136 107-248 45-212 (311)
223 PRK11783 rlmL 23S rRNA m(2)G24 98.4 2.9E-06 6.3E-11 81.0 12.9 106 108-213 190-347 (702)
224 TIGR00308 TRM1 tRNA(guanine-26 98.4 9E-07 2E-11 77.8 8.5 97 110-213 46-147 (374)
225 COG0293 FtsJ 23S rRNA methylas 98.4 7.1E-06 1.5E-10 65.4 12.4 122 106-250 43-185 (205)
226 PF13679 Methyltransf_32: Meth 98.4 1.8E-06 4E-11 65.6 8.6 84 107-190 24-115 (141)
227 PF01728 FtsJ: FtsJ-like methy 98.4 8.2E-07 1.8E-11 70.5 6.3 119 109-250 24-165 (181)
228 KOG1269 SAM-dependent methyltr 98.4 4.6E-07 1E-11 79.0 5.1 109 106-216 108-218 (364)
229 COG3897 Predicted methyltransf 98.3 3.3E-06 7.2E-11 66.0 8.7 120 75-211 54-176 (218)
230 COG4076 Predicted RNA methylas 98.3 9.9E-07 2.1E-11 68.4 5.5 101 109-211 33-133 (252)
231 PF06962 rRNA_methylase: Putat 98.3 1.6E-06 3.4E-11 64.9 6.1 117 132-252 1-129 (140)
232 PF01269 Fibrillarin: Fibrilla 98.3 1.4E-05 3.1E-10 64.2 11.8 136 107-250 72-214 (229)
233 PRK00050 16S rRNA m(4)C1402 me 98.3 2.3E-06 5E-11 72.6 7.8 72 107-181 18-97 (296)
234 PF03059 NAS: Nicotianamine sy 98.3 2.2E-06 4.8E-11 71.8 7.2 104 109-213 121-230 (276)
235 TIGR02987 met_A_Alw26 type II 98.3 1.6E-05 3.4E-10 73.7 13.1 78 109-187 32-125 (524)
236 COG0144 Sun tRNA and rRNA cyto 98.3 3.2E-05 6.9E-10 67.9 14.3 133 106-246 154-315 (355)
237 KOG1331 Predicted methyltransf 98.3 1.9E-06 4.1E-11 71.3 6.0 113 95-217 33-147 (293)
238 PF08123 DOT1: Histone methyla 98.3 5.7E-06 1.2E-10 66.7 8.5 113 96-211 29-156 (205)
239 COG2384 Predicted SAM-dependen 98.2 3.6E-05 7.9E-10 61.6 12.7 122 109-246 17-141 (226)
240 COG0500 SmtA SAM-dependent met 98.2 3.8E-05 8.3E-10 58.6 12.2 102 112-217 52-159 (257)
241 KOG2352 Predicted spermine/spe 98.2 1.9E-05 4.1E-10 70.2 11.1 107 107-215 46-163 (482)
242 PRK11760 putative 23S rRNA C24 98.1 9.5E-06 2.1E-10 69.5 8.0 86 107-206 210-296 (357)
243 COG1889 NOP1 Fibrillarin-like 98.1 6.4E-05 1.4E-09 59.2 11.8 135 107-249 75-215 (231)
244 KOG3201 Uncharacterized conser 98.1 5.6E-06 1.2E-10 62.7 5.4 133 108-251 29-169 (201)
245 PF00398 RrnaAD: Ribosomal RNA 98.1 2.2E-05 4.8E-10 66.1 9.4 100 98-205 19-123 (262)
246 KOG1709 Guanidinoacetate methy 98.1 3.9E-05 8.4E-10 61.0 9.7 115 95-213 88-206 (271)
247 COG4798 Predicted methyltransf 98.1 4.7E-05 1E-09 59.6 9.9 138 106-248 46-205 (238)
248 KOG3987 Uncharacterized conser 98.1 1.7E-06 3.7E-11 68.1 1.7 132 109-251 113-263 (288)
249 PF05971 Methyltransf_10: Prot 98.0 2.2E-05 4.7E-10 66.5 7.8 80 110-189 104-192 (299)
250 PF01861 DUF43: Protein of unk 98.0 0.00098 2.1E-08 54.4 16.2 155 101-265 37-195 (243)
251 PF13578 Methyltransf_24: Meth 98.0 4.4E-06 9.6E-11 60.2 2.3 97 113-213 1-105 (106)
252 PF07091 FmrO: Ribosomal RNA m 97.9 9.6E-05 2.1E-09 60.6 9.8 135 108-247 105-243 (251)
253 KOG4589 Cell division protein 97.8 0.00021 4.4E-09 55.7 9.7 119 107-248 68-208 (232)
254 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.8 0.00023 5E-09 60.6 10.1 132 106-245 83-245 (283)
255 TIGR01444 fkbM_fam methyltrans 97.8 8.5E-05 1.8E-09 56.4 6.7 57 111-168 1-59 (143)
256 KOG2187 tRNA uracil-5-methyltr 97.8 0.00011 2.4E-09 65.7 7.8 103 109-216 384-493 (534)
257 PF03492 Methyltransf_7: SAM d 97.7 0.0011 2.4E-08 57.7 13.6 142 109-250 17-255 (334)
258 PLN02668 indole-3-acetate carb 97.7 0.0012 2.5E-08 58.2 13.4 142 109-250 64-311 (386)
259 KOG3115 Methyltransferase-like 97.7 0.00034 7.4E-09 55.2 8.6 103 110-213 62-183 (249)
260 KOG4058 Uncharacterized conser 97.7 0.00044 9.5E-09 51.8 8.7 118 94-217 57-176 (199)
261 PRK10742 putative methyltransf 97.7 0.00034 7.4E-09 57.6 8.8 77 111-187 91-177 (250)
262 COG0275 Predicted S-adenosylme 97.6 0.001 2.3E-08 55.9 11.6 79 100-180 14-102 (314)
263 KOG1501 Arginine N-methyltrans 97.5 0.00023 5E-09 62.4 5.8 100 110-209 68-171 (636)
264 PF11599 AviRa: RRNA methyltra 97.4 0.0037 8.1E-08 50.0 11.3 118 96-213 38-214 (246)
265 TIGR00006 S-adenosyl-methyltra 97.4 0.001 2.2E-08 56.8 8.9 73 107-181 19-99 (305)
266 TIGR00027 mthyl_TIGR00027 meth 97.4 0.011 2.5E-07 49.6 15.0 136 110-246 83-248 (260)
267 COG5459 Predicted rRNA methyla 97.3 0.00061 1.3E-08 58.2 6.1 110 106-216 111-228 (484)
268 PRK01747 mnmC bifunctional tRN 97.3 0.0018 4E-08 61.8 10.3 124 109-246 58-225 (662)
269 PF02005 TRM: N2,N2-dimethylgu 97.3 0.00081 1.8E-08 59.4 6.7 100 109-214 50-155 (377)
270 PHA01634 hypothetical protein 97.2 0.0031 6.7E-08 46.1 8.2 49 106-154 26-75 (156)
271 cd00315 Cyt_C5_DNA_methylase C 97.2 0.0054 1.2E-07 52.0 11.1 127 111-248 2-143 (275)
272 PF04989 CmcI: Cephalosporin h 97.2 0.0018 3.8E-08 51.9 7.6 139 98-243 24-185 (206)
273 PF03141 Methyltransf_29: Puta 97.2 0.00087 1.9E-08 60.1 6.3 124 110-250 367-493 (506)
274 KOG0822 Protein kinase inhibit 97.1 0.0013 2.8E-08 59.1 6.5 103 110-214 369-479 (649)
275 PRK11524 putative methyltransf 97.1 0.0017 3.7E-08 55.3 6.9 60 93-152 193-252 (284)
276 COG0286 HsdM Type I restrictio 97.0 0.0092 2E-07 54.8 11.7 124 93-216 170-329 (489)
277 COG1565 Uncharacterized conser 97.0 0.011 2.4E-07 51.2 11.2 56 98-153 66-132 (370)
278 COG4627 Uncharacterized protei 96.9 0.00083 1.8E-08 50.7 3.3 80 169-248 42-138 (185)
279 PF01555 N6_N4_Mtase: DNA meth 96.9 0.0019 4E-08 52.8 5.4 58 91-148 174-231 (231)
280 KOG1596 Fibrillarin and relate 96.9 0.0095 2.1E-07 48.5 9.0 102 106-218 154-266 (317)
281 KOG1122 tRNA and rRNA cytosine 96.9 0.023 5E-07 50.0 11.9 111 106-217 239-375 (460)
282 PRK13699 putative methylase; P 96.8 0.0041 8.8E-08 51.2 6.8 60 93-152 148-207 (227)
283 PF04445 SAM_MT: Putative SAM- 96.8 0.0042 9.1E-08 50.8 6.2 77 110-186 77-163 (234)
284 KOG2793 Putative N2,N2-dimethy 96.7 0.022 4.7E-07 47.2 10.1 102 109-213 87-199 (248)
285 COG1568 Predicted methyltransf 96.7 0.014 3.1E-07 48.5 8.8 152 102-266 146-306 (354)
286 PF01795 Methyltransf_5: MraW 96.7 0.0084 1.8E-07 51.3 7.7 73 106-180 18-99 (310)
287 COG3129 Predicted SAM-dependen 96.7 0.0085 1.8E-07 48.5 7.2 79 109-187 79-166 (292)
288 KOG1562 Spermidine synthase [A 96.6 0.0088 1.9E-07 50.2 7.4 106 108-213 121-236 (337)
289 KOG1099 SAM-dependent methyltr 96.6 0.0034 7.4E-08 50.6 4.8 95 110-216 43-166 (294)
290 COG0270 Dcm Site-specific DNA 96.5 0.014 3E-07 50.9 8.5 122 110-242 4-141 (328)
291 PF02254 TrkA_N: TrkA-N domain 96.4 0.07 1.5E-06 38.6 10.6 101 117-244 4-113 (116)
292 COG4301 Uncharacterized conser 96.3 0.098 2.1E-06 43.0 11.3 105 109-213 79-193 (321)
293 PRK13699 putative methylase; P 96.2 0.03 6.5E-07 46.0 8.2 81 159-250 2-98 (227)
294 COG1064 AdhP Zn-dependent alco 96.2 0.031 6.8E-07 48.4 8.6 94 106-216 164-262 (339)
295 PF05430 Methyltransf_30: S-ad 96.1 0.005 1.1E-07 45.5 3.0 77 158-248 32-111 (124)
296 PF02636 Methyltransf_28: Puta 96.1 0.037 8E-07 46.3 8.4 43 110-152 20-72 (252)
297 KOG2671 Putative RNA methylase 96.0 0.014 3E-07 50.0 5.3 111 106-216 206-357 (421)
298 PF07757 AdoMet_MTase: Predict 96.0 0.0058 1.3E-07 43.3 2.6 46 95-140 43-90 (112)
299 COG3510 CmcI Cephalosporin hyd 95.9 0.17 3.8E-06 39.9 10.5 133 98-240 61-211 (237)
300 KOG1227 Putative methyltransfe 95.9 0.016 3.4E-07 48.8 5.0 100 108-213 194-296 (351)
301 PF03269 DUF268: Caenorhabditi 95.8 0.017 3.6E-07 44.2 4.5 130 109-248 2-145 (177)
302 KOG1253 tRNA methyltransferase 95.6 0.0077 1.7E-07 53.9 2.4 103 108-216 109-219 (525)
303 COG1867 TRM1 N2,N2-dimethylgua 95.6 0.064 1.4E-06 46.6 7.8 99 109-214 53-155 (380)
304 PF00145 DNA_methylase: C-5 cy 95.5 0.072 1.6E-06 46.1 8.2 124 111-248 2-142 (335)
305 TIGR00675 dcm DNA-methyltransf 95.4 0.092 2E-06 45.5 8.4 124 112-246 1-138 (315)
306 PTZ00357 methyltransferase; Pr 95.3 0.067 1.4E-06 50.2 7.3 96 111-208 703-830 (1072)
307 PF10237 N6-adenineMlase: Prob 95.2 0.56 1.2E-05 36.4 11.2 106 95-213 12-123 (162)
308 PF10354 DUF2431: Domain of un 95.1 0.28 6.1E-06 38.2 9.5 82 162-251 58-155 (166)
309 PF11899 DUF3419: Protein of u 94.8 0.066 1.4E-06 47.5 5.8 60 157-216 275-337 (380)
310 KOG2920 Predicted methyltransf 94.8 0.0097 2.1E-07 49.8 0.5 106 106-213 114-234 (282)
311 COG3315 O-Methyltransferase in 94.8 0.49 1.1E-05 40.6 10.9 136 109-247 93-263 (297)
312 PF06859 Bin3: Bicoid-interact 94.8 0.019 4.2E-07 41.0 1.9 74 174-247 1-91 (110)
313 KOG2078 tRNA modification enzy 94.8 0.035 7.5E-07 49.0 3.9 64 105-168 246-310 (495)
314 COG2933 Predicted SAM-dependen 94.7 0.14 3E-06 42.5 6.8 86 107-206 210-296 (358)
315 KOG2912 Predicted DNA methylas 94.6 0.11 2.5E-06 44.1 6.3 90 95-184 86-188 (419)
316 PRK10458 DNA cytosine methylas 94.2 0.69 1.5E-05 42.3 11.0 128 110-244 89-255 (467)
317 COG1255 Uncharacterized protei 94.1 0.53 1.1E-05 33.9 7.8 81 109-206 14-97 (129)
318 PF05711 TylF: Macrocin-O-meth 94.0 0.27 5.8E-06 40.9 7.4 123 108-243 74-233 (248)
319 cd08283 FDH_like_1 Glutathione 94.0 0.11 2.4E-06 46.3 5.5 103 107-213 183-306 (386)
320 PRK11524 putative methyltransf 94.0 0.24 5.2E-06 42.2 7.4 57 157-213 7-80 (284)
321 KOG2198 tRNA cytosine-5-methyl 94.0 1.3 2.9E-05 38.7 11.6 135 106-248 153-326 (375)
322 PF11312 DUF3115: Protein of u 93.9 0.15 3.3E-06 43.4 5.8 108 110-217 88-246 (315)
323 COG1063 Tdh Threonine dehydrog 93.9 0.19 4.2E-06 44.2 6.7 98 108-217 168-273 (350)
324 KOG2918 Carboxymethyl transfer 93.5 3.5 7.5E-05 35.3 13.0 158 96-254 76-283 (335)
325 PRK09424 pntA NAD(P) transhydr 93.4 0.88 1.9E-05 42.0 10.2 98 107-214 163-286 (509)
326 PF00107 ADH_zinc_N: Zinc-bind 93.2 0.035 7.7E-07 41.0 0.8 84 118-216 1-92 (130)
327 PF07279 DUF1442: Protein of u 93.2 3 6.5E-05 33.8 11.6 84 95-180 30-121 (218)
328 cd08254 hydroxyacyl_CoA_DH 6-h 92.9 0.29 6.4E-06 42.2 6.2 92 107-214 164-264 (338)
329 KOG2651 rRNA adenine N-6-methy 92.5 0.34 7.3E-06 42.4 5.8 39 110-148 155-194 (476)
330 PRK09880 L-idonate 5-dehydroge 92.4 0.6 1.3E-05 40.8 7.6 96 107-214 168-267 (343)
331 PRK03659 glutathione-regulated 92.4 0.56 1.2E-05 44.5 7.7 90 110-214 401-499 (601)
332 cd05188 MDR Medium chain reduc 92.3 0.57 1.2E-05 38.8 7.1 96 107-214 133-233 (271)
333 PRK09496 trkA potassium transp 91.6 2.4 5.2E-05 38.5 10.9 65 108-180 230-303 (453)
334 TIGR00497 hsdM type I restrict 91.3 2 4.4E-05 39.8 10.1 107 108-214 217-356 (501)
335 PRK10669 putative cation:proto 91.1 1.1 2.3E-05 42.2 8.1 107 110-245 418-533 (558)
336 cd08230 glucose_DH Glucose deh 91.1 0.75 1.6E-05 40.3 6.8 95 107-214 171-270 (355)
337 PF03686 UPF0146: Uncharacteri 90.6 0.45 9.8E-06 35.0 4.0 89 109-216 14-105 (127)
338 PRK03562 glutathione-regulated 90.6 2.8 6E-05 40.0 10.4 90 109-213 400-498 (621)
339 KOG0024 Sorbitol dehydrogenase 90.5 1.1 2.4E-05 38.5 6.7 99 106-217 167-277 (354)
340 PF04072 LCM: Leucine carboxyl 89.9 1.8 3.9E-05 34.2 7.4 89 110-199 80-182 (183)
341 KOG2539 Mitochondrial/chloropl 89.8 2.4 5.3E-05 38.3 8.6 108 109-217 201-319 (491)
342 COG0863 DNA modification methy 89.8 1.2 2.7E-05 37.9 6.9 62 92-153 206-267 (302)
343 KOG2352 Predicted spermine/spe 89.2 1 2.3E-05 40.7 6.0 105 109-214 296-417 (482)
344 COG0604 Qor NADPH:quinone redu 88.6 1.3 2.8E-05 38.6 6.1 97 107-216 141-244 (326)
345 KOG3924 Putative protein methy 88.5 1.3 2.8E-05 39.0 5.9 113 98-213 181-308 (419)
346 TIGR03451 mycoS_dep_FDH mycoth 88.5 0.63 1.4E-05 40.9 4.2 96 107-214 175-277 (358)
347 cd08237 ribitol-5-phosphate_DH 88.4 2.4 5.3E-05 37.0 7.8 92 107-214 162-257 (341)
348 PF05050 Methyltransf_21: Meth 87.4 1.6 3.4E-05 33.3 5.4 36 114-149 1-42 (167)
349 TIGR02822 adh_fam_2 zinc-bindi 87.3 6.2 0.00013 34.2 9.7 90 107-214 164-255 (329)
350 PRK05786 fabG 3-ketoacyl-(acyl 87.2 12 0.00026 30.3 11.0 103 108-214 4-136 (238)
351 cd00401 AdoHcyase S-adenosyl-L 87.1 3 6.5E-05 37.5 7.6 96 98-213 189-289 (413)
352 cd08281 liver_ADH_like1 Zinc-d 87.0 1.8 4E-05 38.2 6.3 96 107-214 190-291 (371)
353 KOG1201 Hydroxysteroid 17-beta 86.9 9.1 0.0002 32.6 9.9 60 106-168 35-97 (300)
354 PLN03154 putative allyl alcoho 86.9 4 8.6E-05 35.8 8.3 95 107-213 157-258 (348)
355 TIGR02825 B4_12hDH leukotriene 86.5 2.9 6.2E-05 36.1 7.1 94 107-213 137-237 (325)
356 PRK07417 arogenate dehydrogena 86.3 4.8 0.0001 34.1 8.2 84 111-209 2-87 (279)
357 cd08261 Zn_ADH7 Alcohol dehydr 86.1 1.3 2.8E-05 38.4 4.8 95 107-213 158-258 (337)
358 TIGR03366 HpnZ_proposed putati 85.6 1.6 3.5E-05 36.9 5.0 96 107-214 119-219 (280)
359 PRK07533 enoyl-(acyl carrier p 85.5 17 0.00038 30.1 11.2 75 107-184 8-98 (258)
360 PRK09496 trkA potassium transp 85.5 20 0.00042 32.6 12.3 89 111-213 2-99 (453)
361 PF03446 NAD_binding_2: NAD bi 85.1 2.6 5.5E-05 32.6 5.5 111 111-247 3-119 (163)
362 cd08232 idonate-5-DH L-idonate 85.1 4.4 9.6E-05 35.0 7.7 92 107-213 164-262 (339)
363 PRK05872 short chain dehydroge 85.0 18 0.00039 30.8 11.2 75 107-184 7-95 (296)
364 cd05278 FDH_like Formaldehyde 84.7 2.8 6E-05 36.4 6.2 94 108-213 167-267 (347)
365 cd08239 THR_DH_like L-threonin 84.7 3.5 7.7E-05 35.7 6.8 96 107-214 162-263 (339)
366 PRK08213 gluconate 5-dehydroge 84.3 3.7 7.9E-05 34.0 6.5 74 107-183 10-98 (259)
367 TIGR01202 bchC 2-desacetyl-2-h 84.1 3.1 6.7E-05 35.7 6.2 86 108-214 144-232 (308)
368 PF11253 DUF3052: Protein of u 83.8 11 0.00025 27.7 7.9 73 171-251 42-114 (127)
369 PRK07109 short chain dehydroge 83.8 21 0.00046 31.0 11.3 73 108-183 7-94 (334)
370 COG1748 LYS9 Saccharopine dehy 83.7 9.1 0.0002 34.2 8.8 67 110-183 2-77 (389)
371 cd08236 sugar_DH NAD(P)-depend 83.6 3.9 8.5E-05 35.4 6.7 95 107-213 158-258 (343)
372 KOG1209 1-Acyl dihydroxyaceton 83.4 23 0.0005 28.9 10.3 68 108-183 6-90 (289)
373 PF02086 MethyltransfD12: D12 83.3 3.2 6.9E-05 34.5 5.8 43 108-150 20-62 (260)
374 PRK08324 short chain dehydroge 83.3 16 0.00034 35.4 11.1 72 108-183 421-507 (681)
375 TIGR00561 pntA NAD(P) transhyd 83.1 6.4 0.00014 36.5 7.9 95 107-211 162-282 (511)
376 PRK05708 2-dehydropantoate 2-r 83.0 24 0.00052 30.3 11.1 101 110-216 3-107 (305)
377 PRK05808 3-hydroxybutyryl-CoA 82.9 19 0.00041 30.5 10.4 92 111-211 5-116 (282)
378 TIGR03201 dearomat_had 6-hydro 82.8 2.5 5.5E-05 36.9 5.2 96 107-214 165-273 (349)
379 PRK08217 fabG 3-ketoacyl-(acyl 82.5 25 0.00054 28.6 12.3 73 108-183 4-91 (253)
380 PRK12939 short chain dehydroge 82.5 18 0.0004 29.4 10.0 73 108-183 6-93 (250)
381 PRK07502 cyclohexadienyl dehyd 82.5 9.4 0.0002 32.8 8.5 87 110-210 7-97 (307)
382 cd08293 PTGR2 Prostaglandin re 82.3 4.8 0.0001 34.9 6.7 91 110-213 156-254 (345)
383 COG5379 BtaA S-adenosylmethion 82.3 3.2 6.9E-05 35.3 5.1 74 135-214 291-367 (414)
384 PRK05867 short chain dehydroge 82.3 26 0.00057 28.7 11.4 75 107-183 7-95 (253)
385 PRK06701 short chain dehydroge 82.3 22 0.00048 30.1 10.6 105 107-213 44-181 (290)
386 PRK05854 short chain dehydroge 82.0 11 0.00025 32.3 8.8 77 107-183 12-102 (313)
387 PF06016 Reovirus_L2: Reovirus 81.9 6.2 0.00013 40.1 7.7 94 108-208 822-920 (1289)
388 cd08234 threonine_DH_like L-th 81.8 15 0.00032 31.6 9.6 93 107-214 158-258 (334)
389 KOG0821 Predicted ribosomal RN 81.8 2.1 4.6E-05 34.8 3.8 60 107-168 49-109 (326)
390 cd08294 leukotriene_B4_DH_like 81.7 4 8.6E-05 35.0 5.9 94 107-213 142-241 (329)
391 TIGR00872 gnd_rel 6-phosphoglu 81.5 17 0.00037 31.1 9.7 113 111-246 2-117 (298)
392 PRK06035 3-hydroxyacyl-CoA deh 81.4 17 0.00037 30.9 9.6 95 110-211 4-119 (291)
393 PF02153 PDH: Prephenate dehyd 81.3 5 0.00011 33.6 6.2 74 123-211 2-77 (258)
394 cd08255 2-desacetyl-2-hydroxye 81.3 13 0.00029 30.9 8.9 92 107-213 96-190 (277)
395 cd05285 sorbitol_DH Sorbitol d 80.9 5.6 0.00012 34.5 6.6 95 107-213 161-265 (343)
396 PRK10537 voltage-gated potassi 80.7 6.8 0.00015 35.1 7.1 104 110-244 241-353 (393)
397 PRK06139 short chain dehydroge 80.6 20 0.00043 31.2 9.9 74 108-183 6-93 (330)
398 cd08245 CAD Cinnamyl alcohol d 80.4 12 0.00025 32.2 8.4 94 107-213 161-256 (330)
399 PF13460 NAD_binding_10: NADH( 80.3 19 0.00042 27.8 9.0 119 117-249 5-144 (183)
400 PRK09260 3-hydroxybutyryl-CoA 80.1 16 0.00034 31.1 8.9 96 111-212 3-116 (288)
401 PRK07806 short chain dehydroge 80.1 31 0.00067 28.1 10.7 103 108-213 5-134 (248)
402 TIGR00936 ahcY adenosylhomocys 80.0 18 0.00038 32.6 9.4 104 107-238 193-299 (406)
403 PRK07066 3-hydroxybutyryl-CoA 80.0 8.8 0.00019 33.4 7.3 96 110-211 8-117 (321)
404 cd05281 TDH Threonine dehydrog 79.7 5.2 0.00011 34.7 6.0 95 107-213 162-262 (341)
405 PRK08594 enoyl-(acyl carrier p 79.7 34 0.00073 28.3 10.9 73 107-183 5-96 (257)
406 cd08295 double_bond_reductase_ 79.5 13 0.00027 32.2 8.4 94 107-213 150-251 (338)
407 cd08285 NADP_ADH NADP(H)-depen 79.4 3.3 7.1E-05 36.1 4.7 95 107-213 165-266 (351)
408 PRK07819 3-hydroxybutyryl-CoA 79.2 22 0.00047 30.3 9.5 97 110-213 6-121 (286)
409 PRK07984 enoyl-(acyl carrier p 78.8 37 0.0008 28.3 11.6 74 108-184 5-94 (262)
410 PRK07063 short chain dehydroge 78.2 13 0.00028 30.7 7.8 76 108-183 6-95 (260)
411 PF14740 DUF4471: Domain of un 78.2 1.7 3.7E-05 36.9 2.4 78 158-244 201-285 (289)
412 KOG0023 Alcohol dehydrogenase, 78.1 17 0.00038 31.4 8.3 98 107-217 180-283 (360)
413 PF02737 3HCDH_N: 3-hydroxyacy 77.7 13 0.00029 29.2 7.2 96 112-214 2-115 (180)
414 PF03514 GRAS: GRAS domain fam 77.6 37 0.0008 30.2 10.7 101 108-211 110-242 (374)
415 KOG1197 Predicted quinone oxid 77.5 12 0.00026 31.3 6.9 96 106-214 144-246 (336)
416 PF07109 Mg-por_mtran_C: Magne 77.0 15 0.00033 25.7 6.4 70 182-253 3-87 (97)
417 PRK11154 fadJ multifunctional 76.9 22 0.00048 34.6 9.8 97 110-213 310-425 (708)
418 PRK11730 fadB multifunctional 76.9 19 0.00041 35.1 9.4 97 110-213 314-428 (715)
419 PRK06124 gluconate 5-dehydroge 76.8 14 0.00031 30.3 7.6 75 106-183 8-97 (256)
420 PF11899 DUF3419: Protein of u 76.7 6.1 0.00013 35.2 5.5 45 106-150 33-77 (380)
421 CHL00194 ycf39 Ycf39; Provisio 76.6 25 0.00055 30.2 9.3 129 111-248 2-144 (317)
422 PRK06522 2-dehydropantoate 2-r 76.6 39 0.00084 28.7 10.5 98 111-214 2-101 (304)
423 PRK06079 enoyl-(acyl carrier p 76.4 42 0.00091 27.6 11.1 72 108-184 6-93 (252)
424 cd08278 benzyl_alcohol_DH Benz 76.2 7.3 0.00016 34.3 6.0 90 108-213 186-285 (365)
425 KOG1208 Dehydrogenases with di 76.2 45 0.00098 28.9 10.6 79 106-184 32-124 (314)
426 COG0686 Ald Alanine dehydrogen 75.7 11 0.00023 32.6 6.4 96 109-211 168-266 (371)
427 COG4121 Uncharacterized conser 75.4 10 0.00022 31.7 6.0 124 109-246 59-227 (252)
428 PRK07985 oxidoreductase; Provi 75.3 50 0.0011 28.0 11.2 105 107-213 47-185 (294)
429 KOG4174 Uncharacterized conser 75.3 24 0.00053 29.4 8.1 132 110-249 58-218 (282)
430 PTZ00142 6-phosphogluconate de 75.2 19 0.00041 33.2 8.4 119 112-246 4-125 (470)
431 cd08233 butanediol_DH_like (2R 75.1 4.9 0.00011 35.0 4.6 96 107-214 171-273 (351)
432 TIGR00692 tdh L-threonine 3-de 74.4 9.4 0.0002 33.1 6.2 96 107-214 160-262 (340)
433 PRK06172 short chain dehydroge 74.4 18 0.00039 29.6 7.6 74 107-183 5-93 (253)
434 KOG1098 Putative SAM-dependent 74.3 2.7 5.8E-05 39.3 2.7 96 108-215 44-160 (780)
435 PRK08293 3-hydroxybutyryl-CoA 74.3 22 0.00048 30.1 8.3 96 110-211 4-118 (287)
436 PRK06940 short chain dehydroge 74.3 51 0.0011 27.6 11.0 70 111-184 4-86 (275)
437 PRK15057 UDP-glucose 6-dehydro 74.2 63 0.0014 28.9 11.3 38 112-149 3-41 (388)
438 PRK10309 galactitol-1-phosphat 74.1 13 0.00027 32.4 6.9 96 107-214 159-261 (347)
439 PRK07523 gluconate 5-dehydroge 73.7 19 0.00041 29.6 7.6 75 107-184 8-97 (255)
440 TIGR00518 alaDH alanine dehydr 73.3 11 0.00024 33.5 6.3 100 108-214 166-268 (370)
441 PRK12490 6-phosphogluconate de 73.1 32 0.00069 29.4 9.0 111 112-245 3-117 (299)
442 PRK11064 wecC UDP-N-acetyl-D-m 72.9 21 0.00045 32.2 8.1 114 110-239 4-136 (415)
443 PRK12548 shikimate 5-dehydroge 72.8 25 0.00055 29.9 8.2 121 107-244 124-256 (289)
444 PRK09291 short chain dehydroge 72.8 22 0.00048 29.1 7.8 71 110-183 3-82 (257)
445 PRK07062 short chain dehydroge 72.7 21 0.00046 29.5 7.7 77 107-183 6-96 (265)
446 PF01555 N6_N4_Mtase: DNA meth 72.4 8.5 0.00019 30.9 5.1 52 192-252 35-87 (231)
447 PRK12823 benD 1,6-dihydroxycyc 72.3 53 0.0011 26.9 13.4 72 108-182 7-92 (260)
448 PF01210 NAD_Gly3P_dh_N: NAD-d 72.3 19 0.0004 27.5 6.7 94 112-213 2-103 (157)
449 PRK06128 oxidoreductase; Provi 72.2 60 0.0013 27.5 10.7 104 107-213 53-191 (300)
450 PLN02989 cinnamyl-alcohol dehy 72.2 12 0.00026 32.1 6.3 74 109-183 5-86 (325)
451 PRK07454 short chain dehydroge 72.1 21 0.00046 28.9 7.5 73 109-184 6-93 (241)
452 TIGR02818 adh_III_F_hyde S-(hy 72.0 5.9 0.00013 34.9 4.3 95 107-214 184-288 (368)
453 PRK07035 short chain dehydroge 71.8 23 0.0005 29.0 7.7 75 107-183 6-94 (252)
454 PRK09599 6-phosphogluconate de 71.6 39 0.00085 28.9 9.2 113 111-245 2-117 (301)
455 PRK07097 gluconate 5-dehydroge 71.5 22 0.00048 29.5 7.5 76 107-184 8-97 (265)
456 PRK06949 short chain dehydroge 71.5 25 0.00054 28.8 7.8 74 107-183 7-95 (258)
457 PTZ00075 Adenosylhomocysteinas 71.3 27 0.0006 32.1 8.3 86 106-213 251-341 (476)
458 PRK07890 short chain dehydroge 71.0 24 0.00052 28.9 7.6 73 108-183 4-91 (258)
459 cd08238 sorbose_phosphate_red 70.9 34 0.00073 30.7 9.0 98 107-212 174-287 (410)
460 PF03807 F420_oxidored: NADP o 70.9 7.2 0.00016 26.8 3.8 79 118-211 6-92 (96)
461 PRK07677 short chain dehydroge 70.8 23 0.00049 29.1 7.4 71 110-182 2-86 (252)
462 COG5379 BtaA S-adenosylmethion 70.8 13 0.00028 31.8 5.6 45 107-151 62-106 (414)
463 PLN02896 cinnamyl-alcohol dehy 70.7 71 0.0015 27.8 10.9 72 108-183 9-88 (353)
464 PLN02662 cinnamyl-alcohol dehy 70.7 11 0.00024 32.2 5.7 74 109-183 4-85 (322)
465 PRK05396 tdh L-threonine 3-deh 70.7 14 0.0003 31.9 6.4 96 107-214 162-264 (341)
466 PRK08507 prephenate dehydrogen 70.6 23 0.00051 29.8 7.5 83 111-210 2-88 (275)
467 cd08279 Zn_ADH_class_III Class 70.2 7.9 0.00017 34.0 4.7 92 107-213 181-282 (363)
468 PRK06914 short chain dehydroge 70.2 27 0.00058 29.1 7.8 73 110-183 4-90 (280)
469 PRK06505 enoyl-(acyl carrier p 70.1 64 0.0014 27.0 11.2 74 108-184 6-95 (271)
470 COG0287 TyrA Prephenate dehydr 69.5 19 0.00042 30.6 6.7 88 110-210 4-95 (279)
471 COG0677 WecC UDP-N-acetyl-D-ma 69.4 38 0.00083 30.3 8.5 94 110-213 10-128 (436)
472 PRK06125 short chain dehydroge 69.4 33 0.00072 28.2 8.1 74 108-183 6-90 (259)
473 PLN02545 3-hydroxybutyryl-CoA 69.2 71 0.0015 27.1 12.1 95 110-211 5-117 (295)
474 PRK08339 short chain dehydroge 69.2 30 0.00064 28.8 7.8 76 107-183 6-94 (263)
475 PRK08862 short chain dehydroge 68.7 27 0.00059 28.4 7.3 73 108-182 4-91 (227)
476 PRK07326 short chain dehydroge 68.6 26 0.00056 28.3 7.2 71 109-183 6-91 (237)
477 PRK07814 short chain dehydroge 68.4 31 0.00068 28.5 7.8 74 107-183 8-96 (263)
478 PRK06484 short chain dehydroge 68.3 87 0.0019 28.9 11.4 71 108-183 268-352 (520)
479 TIGR02441 fa_ox_alpha_mit fatt 68.3 22 0.00047 34.8 7.5 98 110-214 336-451 (737)
480 PRK05876 short chain dehydroge 68.3 29 0.00063 29.1 7.6 74 108-184 5-93 (275)
481 PRK09242 tropinone reductase; 68.1 31 0.00067 28.4 7.7 77 108-184 8-98 (257)
482 PRK08415 enoyl-(acyl carrier p 68.0 72 0.0016 26.8 11.4 103 108-213 4-143 (274)
483 cd01842 SGNH_hydrolase_like_5 68.0 45 0.00099 26.3 7.8 81 170-250 46-152 (183)
484 PRK00258 aroE shikimate 5-dehy 68.0 51 0.0011 27.9 9.0 116 107-244 121-241 (278)
485 PRK12743 oxidoreductase; Provi 67.9 67 0.0014 26.3 10.3 71 110-183 3-89 (256)
486 PLN02586 probable cinnamyl alc 67.8 24 0.00052 31.0 7.3 92 107-214 182-279 (360)
487 PRK06249 2-dehydropantoate 2-r 67.7 53 0.0012 28.2 9.3 100 109-215 5-108 (313)
488 cd08241 QOR1 Quinone oxidoredu 67.6 11 0.00025 31.7 5.1 94 107-213 138-238 (323)
489 PRK06194 hypothetical protein; 67.3 31 0.00068 28.9 7.7 73 109-184 6-93 (287)
490 cd08263 Zn_ADH10 Alcohol dehyd 67.2 15 0.00033 32.1 6.0 92 107-213 186-287 (367)
491 COG2910 Putative NADH-flavin r 67.1 23 0.00049 28.2 6.0 79 117-205 7-94 (211)
492 PRK07478 short chain dehydroge 67.1 35 0.00077 27.9 7.8 74 108-183 5-92 (254)
493 PRK07889 enoyl-(acyl carrier p 67.0 71 0.0015 26.3 10.7 101 108-213 6-145 (256)
494 PRK08655 prephenate dehydrogen 66.8 41 0.00088 30.7 8.6 86 111-211 2-90 (437)
495 PRK08703 short chain dehydroge 66.8 42 0.00091 27.2 8.1 75 107-183 4-96 (239)
496 PRK07530 3-hydroxybutyryl-CoA 66.6 80 0.0017 26.8 10.1 93 110-211 5-117 (292)
497 PRK09186 flagellin modificatio 66.6 34 0.00073 28.0 7.6 73 109-182 4-91 (256)
498 PRK07370 enoyl-(acyl carrier p 66.5 73 0.0016 26.3 9.9 74 108-184 5-97 (258)
499 cd08266 Zn_ADH_like1 Alcohol d 66.0 16 0.00035 31.2 5.8 94 107-213 165-265 (342)
500 COG2961 ComJ Protein involved 65.9 79 0.0017 26.5 11.6 137 92-242 71-216 (279)
No 1
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.91 E-value=1e-22 Score=165.18 Aligned_cols=175 Identities=22% Similarity=0.412 Sum_probs=143.4
Q ss_pred chhHhhhcCCCCccCCCccHHHHHHHhcCC-CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcC--
Q 024021 77 GWEKCWEEGLTPWDIGQPAPIIVHLHQSGA-LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSL-- 153 (274)
Q Consensus 77 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~-- 153 (274)
+|+++|..+..+|+...+.+.+.+++.... .++.+|||+|||.|..+.+|++.|..|+|+|+|+.+++.+.......
T Consensus 2 ~Wd~ry~~~~~~w~~~~p~~~l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~ 81 (213)
T TIGR03840 2 FWHERWQEGQIGFHQSEVNPLLVKHWPALGLPAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPT 81 (213)
T ss_pred hHHHHHhcCCCCCccCCCCHHHHHHHHhhCCCCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcc
Confidence 799999999999998999999999887643 35679999999999999999999999999999999999864422110
Q ss_pred ---------CCCcceEEEEcccCCCCC--CCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCC-CCCC
Q 024021 154 ---------PNAKFVSFLKADFFTWCP--TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS-DHVG 221 (274)
Q Consensus 154 ---------~~~~~~~~~~~d~~~~~~--~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~-~~~~ 221 (274)
....+++++++|+++... .++||.|+...++++++++.+..+++.+.++|+|||.+++..+... ....
T Consensus 82 ~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~ 161 (213)
T TIGR03840 82 VTQQGEFTRYRAGNIEIFCGDFFALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEMA 161 (213)
T ss_pred eeccccceeeecCceEEEEccCCCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCC
Confidence 012469999999998543 3579999999999999999999999999999999998777766542 3346
Q ss_pred CCCcccCHHHHHHHHhcCCCcEEEEeecccc
Q 024021 222 GPPYKVSVSDYEEVLQPMGFQAISIVDNKLA 252 (274)
Q Consensus 222 ~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~ 252 (274)
++++..+.+++.+++.. +|.+..+......
T Consensus 162 gpp~~~~~~eL~~~f~~-~~~i~~~~~~~~~ 191 (213)
T TIGR03840 162 GPPFSVSPAEVEALYGG-HYEIELLESRDVL 191 (213)
T ss_pred CcCCCCCHHHHHHHhcC-CceEEEEeecccc
Confidence 78888999999999975 6888877765543
No 2
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.90 E-value=7e-22 Score=160.88 Aligned_cols=179 Identities=21% Similarity=0.354 Sum_probs=144.1
Q ss_pred ccchhHhhhcCCCCccCCCccHHHHHHHhcCC-CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcC
Q 024021 75 SGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGA-LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSL 153 (274)
Q Consensus 75 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~ 153 (274)
..+|+++|..+..+|+...+++.+.+++.... .++.+|||+|||.|..+.+|++.|++|+|+|+|+.+++.+.......
T Consensus 3 ~~~Wd~rw~~~~~~~~~~~p~~~L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~~l~ 82 (218)
T PRK13255 3 PDFWHEKWAENQIGFHQEEVNPLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENGLT 82 (218)
T ss_pred HhHHHHHHcCCCCCCCCCCCCHHHHHHHHhhCCCCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHcCCC
Confidence 46899999999999998999999999887543 34579999999999999999999999999999999999875422111
Q ss_pred -----------CCCcceEEEEcccCCCCC--CCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc-cCCCC
Q 024021 154 -----------PNAKFVSFLKADFFTWCP--TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF-PISDH 219 (274)
Q Consensus 154 -----------~~~~~~~~~~~d~~~~~~--~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~-~~~~~ 219 (274)
....++++.++|++++.+ ...||+|+...++++++++.+..++..+.++|+|||.+++..+ .....
T Consensus 83 ~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~ 162 (218)
T PRK13255 83 PQTRQSGEFEHYQAGEITIYCGDFFALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEE 162 (218)
T ss_pred ccccccccccccccCceEEEECcccCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCcc
Confidence 013579999999998543 2579999999999999999999999999999999996554333 23344
Q ss_pred CCCCCcccCHHHHHHHHhcCCCcEEEEeecccccC
Q 024021 220 VGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIG 254 (274)
Q Consensus 220 ~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~ 254 (274)
..|+++.++.+++.+++.. +|.+..+........
T Consensus 163 ~~gPp~~~~~~el~~~~~~-~~~i~~~~~~~~~~~ 196 (218)
T PRK13255 163 LAGPPFSVSDEEVEALYAG-CFEIELLERQDVLED 196 (218)
T ss_pred CCCCCCCCCHHHHHHHhcC-CceEEEeeecccccc
Confidence 5788889999999999964 488888776554443
No 3
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.90 E-value=4.6e-22 Score=161.23 Aligned_cols=174 Identities=17% Similarity=0.310 Sum_probs=147.9
Q ss_pred cccchhHhhhcCCCCccCCCccHHHHHHHhcCCC-CCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhc
Q 024021 74 SSGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSS 152 (274)
Q Consensus 74 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~ 152 (274)
...+|+++|..+..+|+...+++.+.+++..... ++.+||++|||.|..+.+|+..|++|+|+|+|+.+++.+.+....
T Consensus 8 ~~~fW~~rw~~~~~~f~~~~pnp~L~~~~~~l~~~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~ 87 (226)
T PRK13256 8 NNQYWLDRWQNDDVGFCQESPNEFLVKHFSKLNINDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTI 87 (226)
T ss_pred CHHHHHHHHhcCCCCCccCCCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCC
Confidence 4468999999999999999999999888876644 457999999999999999999999999999999999998663211
Q ss_pred C-----------CCCcceEEEEcccCCCCC----CCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCC
Q 024021 153 L-----------PNAKFVSFLKADFFTWCP----TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS 217 (274)
Q Consensus 153 ~-----------~~~~~~~~~~~d~~~~~~----~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 217 (274)
. ....++++.++|++++.+ .++||+|+...++++++++.+..+++.+.++|+|||.+++..+...
T Consensus 88 ~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~ 167 (226)
T PRK13256 88 NYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHD 167 (226)
T ss_pred CcceecccccceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecC
Confidence 0 012479999999999643 2589999999999999999999999999999999999998888655
Q ss_pred CCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024021 218 DHVGGPPYKVSVSDYEEVLQPMGFQAISIVD 248 (274)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 248 (274)
....||||..+.+++.+++.. +|.+..+..
T Consensus 168 ~~~~GPPf~v~~~e~~~lf~~-~~~i~~l~~ 197 (226)
T PRK13256 168 KKSQTPPYSVTQAELIKNFSA-KIKFELIDS 197 (226)
T ss_pred CCCCCCCCcCCHHHHHHhccC-CceEEEeee
Confidence 556899999999999999976 577666654
No 4
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.89 E-value=3.1e-22 Score=162.63 Aligned_cols=174 Identities=40% Similarity=0.758 Sum_probs=134.5
Q ss_pred ccchhHhhhcCCCCccCCCccHHHHHHHhcCCC-CCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhc-
Q 024021 75 SGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSS- 152 (274)
Q Consensus 75 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~- 152 (274)
..+|++.|..+..+|+.+.+.+.+.+++..... ++.+||..|||.|..+..|++.|.+|+|+|+|+.+++.+.+....
T Consensus 3 ~~~W~~~w~~~~~~w~~~~~~p~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~ 82 (218)
T PF05724_consen 3 PEFWEERWQEGQTPWDQGEPNPALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLE 82 (218)
T ss_dssp HHHHHHHHHTT--TT--TTSTHHHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTE
T ss_pred HHHHHHHHhcCCCCCCCCCCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccC
Confidence 478999999999999999999999999987433 346999999999999999999999999999999999998543221
Q ss_pred ------CC----CCcceEEEEcccCCCCCC--CCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEE--EEccCCC
Q 024021 153 ------LP----NAKFVSFLKADFFTWCPT--ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT--LMFPISD 218 (274)
Q Consensus 153 ------~~----~~~~~~~~~~d~~~~~~~--~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~--~~~~~~~ 218 (274)
.. ...++++.++|+++..+. ++||+|+-..+++.++++.+..+.+.+.++|+|||.+++ ..+.. .
T Consensus 83 ~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~-~ 161 (218)
T PF05724_consen 83 PTVTSVGGFKRYQAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQ-G 161 (218)
T ss_dssp EECTTCTTEEEETTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-C-S
T ss_pred CCcccccceeeecCCceEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCC-c
Confidence 00 134689999999995443 479999999999999999999999999999999999443 33333 3
Q ss_pred CCCCCCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024021 219 HVGGPPYKVSVSDYEEVLQPMGFQAISIVDNK 250 (274)
Q Consensus 219 ~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 250 (274)
...||||..+.+++.+++. .+|++..++...
T Consensus 162 ~~~GPPf~v~~~ev~~l~~-~~f~i~~l~~~~ 192 (218)
T PF05724_consen 162 EMEGPPFSVTEEEVRELFG-PGFEIEELEEED 192 (218)
T ss_dssp CSSSSS----HHHHHHHHT-TTEEEEEEEEEE
T ss_pred CCCCcCCCCCHHHHHHHhc-CCcEEEEEeccc
Confidence 3449999999999999999 689999888733
No 5
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.87 E-value=6.2e-21 Score=153.68 Aligned_cols=154 Identities=14% Similarity=0.255 Sum_probs=125.3
Q ss_pred CCCccHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC
Q 024021 91 IGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC 170 (274)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 170 (274)
...+.+.+.+.+. ..++.+|||+|||+|..+..+++.|.+|+|+|+|+.+++.++++....++ .++++...|+.+..
T Consensus 15 ~~~~~~~l~~~l~--~~~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~~ 91 (197)
T PRK11207 15 LTRTHSEVLEAVK--VVKPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENL-DNLHTAVVDLNNLT 91 (197)
T ss_pred CCCChHHHHHhcc--cCCCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCC-CcceEEecChhhCC
Confidence 3456777777766 34568999999999999999999999999999999999999998877655 35889999987754
Q ss_pred CCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEE-EccCCCC--CCCCCcccCHHHHHHHHhcCCCcEEEEe
Q 024021 171 PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITL-MFPISDH--VGGPPYKVSVSDYEEVLQPMGFQAISIV 247 (274)
Q Consensus 171 ~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 247 (274)
..++||+|++..++++++++.+..+++.+.++|+|||++++. .+...+. ..++++.++.+++.++++ ||.++...
T Consensus 92 ~~~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~--~~~~~~~~ 169 (197)
T PRK11207 92 FDGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYE--GWEMVKYN 169 (197)
T ss_pred cCCCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCCCCCCCccCHHHHHHHhC--CCeEEEee
Confidence 456799999999999888778899999999999999996554 3333221 245677789999999998 89988875
Q ss_pred ec
Q 024021 248 DN 249 (274)
Q Consensus 248 ~~ 249 (274)
..
T Consensus 170 ~~ 171 (197)
T PRK11207 170 ED 171 (197)
T ss_pred CC
Confidence 53
No 6
>PLN02244 tocopherol O-methyltransferase
Probab=99.86 E-value=3.6e-20 Score=161.17 Aligned_cols=190 Identities=23% Similarity=0.307 Sum_probs=140.8
Q ss_pred hhHHHHHHHHhhcccccchhHhhhcCCC--CccCCC--------ccHHHHHHHhcCC------CCCCeEEEEcCCcchhH
Q 024021 60 HPRVNKLQQLMHIESSGGWEKCWEEGLT--PWDIGQ--------PAPIIVHLHQSGA------LPKGRALVPGCGTGYDV 123 (274)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~--~~~~~~--------~~~~~~~~~~~~~------~~~~~vLDiG~G~G~~~ 123 (274)
....+.+..+|+ .....|+..|+.... .|.... ....+..++.... .++.+|||+|||+|..+
T Consensus 55 ~~~~~~i~~~Yd-~~~~~~e~~~g~~~h~g~~~~~~~~~~~~~aq~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~ 133 (340)
T PLN02244 55 ADLKEGIAEFYD-ESSGVWEDVWGEHMHHGYYDPGASRGDHRQAQIRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSS 133 (340)
T ss_pred hhHHHHHHHHHc-cchHHHHHHhCCcceeeccCCCCCcccHHHHHHHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHH
Confidence 334555666666 556788888765432 232210 0122334444433 34579999999999999
Q ss_pred HHhhCC-CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEecccccccChhHHHHHHHHHHh
Q 024021 124 VAMASP-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKD 201 (274)
Q Consensus 124 ~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~ 201 (274)
..+++. +.+|+|+|+++.+++.++++....+..++++|+.+|+.+ +.++++||+|++..+++|+++ ...+++++.+
T Consensus 134 ~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~~h~~d--~~~~l~e~~r 211 (340)
T PLN02244 134 RYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESGEHMPD--KRKFVQELAR 211 (340)
T ss_pred HHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCchhccCC--HHHHHHHHHH
Confidence 999874 789999999999999999998877776789999999987 456689999999999999864 4678999999
Q ss_pred cccCCcEEEEEEccCCCCCC--------------------CCCcccCHHHHHHHHhcCCCcEEEEeecccc
Q 024021 202 FLKPDGELITLMFPISDHVG--------------------GPPYKVSVSDYEEVLQPMGFQAISIVDNKLA 252 (274)
Q Consensus 202 ~L~pgG~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~ 252 (274)
+|+|||.+++.++....... ..+...+.+++.++++++||..+.+.++...
T Consensus 212 vLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~~v~~~d~s~~ 282 (340)
T PLN02244 212 VAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLGLQDIKTEDWSEH 282 (340)
T ss_pred HcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCCCCeeEeeeCcHH
Confidence 99999999998764322110 1112247899999999999999998876643
No 7
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.85 E-value=7.2e-21 Score=156.40 Aligned_cols=149 Identities=23% Similarity=0.266 Sum_probs=86.9
Q ss_pred HHHHHHhcCCCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCC
Q 024021 97 IIVHLHQSGALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPT 172 (274)
Q Consensus 97 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~ 172 (274)
.+...+. ..++.+|||+|||||.++..+++ +..+|+++|+|+.|++.|+++....+.. +++++++|+.+ +.++
T Consensus 38 ~~~~~~~--~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~lp~~d 114 (233)
T PF01209_consen 38 KLIKLLG--LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAEDLPFPD 114 (233)
T ss_dssp HHHHHHT----S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB--S-T
T ss_pred HHHhccC--CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHHhcCCC
Confidence 3444443 45678999999999999998876 3469999999999999999998876553 79999999998 5677
Q ss_pred CCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCC---------------------C----------
Q 024021 173 ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHV---------------------G---------- 221 (274)
Q Consensus 173 ~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~---------------------~---------- 221 (274)
++||+|++...+..+++ ....+++++|+|||||.+++.+++..... .
T Consensus 115 ~sfD~v~~~fglrn~~d--~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~ 192 (233)
T PF01209_consen 115 NSFDAVTCSFGLRNFPD--RERALREMYRVLKPGGRLVILEFSKPRNPLLRALYKFYFKYILPLIGRLLSGDREAYRYLP 192 (233)
T ss_dssp T-EEEEEEES-GGG-SS--HHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHHHHH------------------------
T ss_pred CceeEEEHHhhHHhhCC--HHHHHHHHHHHcCCCeEEEEeeccCCCCchhhceeeeeecccccccccccccccccccccc
Confidence 89999999999998864 46789999999999999999888765430 0
Q ss_pred -CCCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024021 222 -GPPYKVSVSDYEEVLQPMGFQAISIVDNK 250 (274)
Q Consensus 222 -~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 250 (274)
....+.+.+++.++++++||+.++.....
T Consensus 193 ~Si~~f~~~~~~~~~l~~~Gf~~v~~~~~~ 222 (233)
T PF01209_consen 193 ESIRRFPSPEELKELLEEAGFKNVEYRPLT 222 (233)
T ss_dssp ------------------------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 00112478999999999999988765543
No 8
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.84 E-value=5.4e-20 Score=154.30 Aligned_cols=149 Identities=17% Similarity=0.197 Sum_probs=120.5
Q ss_pred HHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC--CCCCCe
Q 024021 98 IVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--CPTELF 175 (274)
Q Consensus 98 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~ 175 (274)
+..++.....++.+|||+|||+|..+..+++.+.+|+++|+++++++.|+++....+..++++++.+|+.+. .+.++|
T Consensus 34 ~~~~l~~l~~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~f 113 (255)
T PRK11036 34 LDRLLAELPPRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPV 113 (255)
T ss_pred HHHHHHhcCCCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCC
Confidence 445555545556799999999999999999999999999999999999999998877667899999998763 345789
Q ss_pred eEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC-----------------------CCCCCcccCHHHH
Q 024021 176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH-----------------------VGGPPYKVSVSDY 232 (274)
Q Consensus 176 D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~ 232 (274)
|+|++..+++++++. ..++.++.++|+|||++++..++.... ...+.+.++++++
T Consensus 114 D~V~~~~vl~~~~~~--~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l 191 (255)
T PRK11036 114 DLILFHAVLEWVADP--KSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQV 191 (255)
T ss_pred CEEEehhHHHhhCCH--HHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHHH
Confidence 999999999998643 578999999999999998876543210 1112345689999
Q ss_pred HHHHhcCCCcEEEEee
Q 024021 233 EEVLQPMGFQAISIVD 248 (274)
Q Consensus 233 ~~~l~~~Gf~~~~~~~ 248 (274)
.++++++||+++...-
T Consensus 192 ~~~l~~aGf~~~~~~g 207 (255)
T PRK11036 192 YQWLEEAGWQIMGKTG 207 (255)
T ss_pred HHHHHHCCCeEeeeee
Confidence 9999999999986544
No 9
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.83 E-value=6.5e-20 Score=151.89 Aligned_cols=197 Identities=18% Similarity=0.164 Sum_probs=153.6
Q ss_pred HHHHHhhcccccchhHhhhcCCCCccCCCccHHHHHHHhcC-CCCCCeEEEEcCCcchhHHHhhCC-CCeEEEEeCChHH
Q 024021 65 KLQQLMHIESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQSG-ALPKGRALVPGCGTGYDVVAMASP-ERYVVGLEISDIA 142 (274)
Q Consensus 65 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~-~~~v~~vD~~~~~ 142 (274)
.+.+++.+....||..+|......-. ..-...+...++.+ ..++++|||||||+|.+++++++. |.+|+|+++|+++
T Consensus 29 ~fy~l~Ld~~~~Yscayf~~~~~tL~-eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q 107 (283)
T COG2230 29 DFYRLFLDPSMTYSCAYFEDPDMTLE-EAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQ 107 (283)
T ss_pred HHHHHhcCCCCceeeEEeCCCCCChH-HHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHH
Confidence 56667777788888888876543101 11133344444444 456689999999999999999985 8999999999999
Q ss_pred HHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCC-
Q 024021 143 IKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVG- 221 (274)
Q Consensus 143 ~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~- 221 (274)
.+.+++++...++..+++++..|..+... +||-|++.++++|+..+..+.++..+.++|+|||.+++......+...
T Consensus 108 ~~~~~~r~~~~gl~~~v~v~l~d~rd~~e--~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~ 185 (283)
T COG2230 108 LAYAEKRIAARGLEDNVEVRLQDYRDFEE--PFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFR 185 (283)
T ss_pred HHHHHHHHHHcCCCcccEEEecccccccc--ccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccc
Confidence 99999999999988899999999987553 399999999999998888999999999999999999987776665322
Q ss_pred CC-----------CcccCHHHHHHHHhcCCCcEEEEeecccccCCccchhHHHHhhhhh
Q 024021 222 GP-----------PYKVSVSDYEEVLQPMGFQAISIVDNKLAIGPRKGREKLGRWKRSV 269 (274)
Q Consensus 222 ~~-----------~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (274)
+. ....+..++.+..+++||.+.........+ ..++..|...+
T Consensus 186 ~~~~~i~~yiFPgG~lPs~~~i~~~~~~~~~~v~~~~~~~~hY-----a~Tl~~W~~~f 239 (283)
T COG2230 186 RFPDFIDKYIFPGGELPSISEILELASEAGFVVLDVESLRPHY-----ARTLRLWRERF 239 (283)
T ss_pred cchHHHHHhCCCCCcCCCHHHHHHHHHhcCcEEehHhhhcHHH-----HHHHHHHHHHH
Confidence 11 011367999999999999998877655433 46777776654
No 10
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.83 E-value=1.6e-19 Score=142.53 Aligned_cols=166 Identities=20% Similarity=0.275 Sum_probs=120.5
Q ss_pred cchhHhhhcCCCCccCCCccHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCC
Q 024021 76 GGWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPN 155 (274)
Q Consensus 76 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~ 155 (274)
++|.+.|..+.. +..+.+.++ ..++.++||+|||.|.++.+|++.|+.|+++|.|+.+++.+++.....++
T Consensus 7 ~y~~kky~~~~~-------hs~v~~a~~--~~~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l 77 (192)
T PF03848_consen 7 DYFHKKYGLTPT-------HSEVLEAVP--LLKPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGL 77 (192)
T ss_dssp THHHHHHTB-----------HHHHHHCT--TS-SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-
T ss_pred HHHHHhhCCCCC-------cHHHHHHHh--hcCCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCc
Confidence 455666654322 344555544 34578999999999999999999999999999999999999998877765
Q ss_pred CcceEEEEcccCCCCCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC---CCCCCcccCHHHH
Q 024021 156 AKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH---VGGPPYKVSVSDY 232 (274)
Q Consensus 156 ~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~---~~~~~~~~~~~~~ 232 (274)
. ++....|+.+...++.||+|++..++.+++.+.++.+++.+...++|||++++..+..... ...+++.+.+.|+
T Consensus 78 ~--i~~~~~Dl~~~~~~~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~~~~~f~~~~~EL 155 (192)
T PF03848_consen 78 D--IRTRVADLNDFDFPEEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMETPDYPCPSPFPFLLKPGEL 155 (192)
T ss_dssp T--EEEEE-BGCCBS-TTTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--SS--S--B-TTHH
T ss_pred e--eEEEEecchhccccCCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCCCCCCcccCHHHH
Confidence 3 8999999988666688999999999999999999999999999999999988865533222 2234566788999
Q ss_pred HHHHhcCCCcEEEEeecccccC
Q 024021 233 EEVLQPMGFQAISIVDNKLAIG 254 (274)
Q Consensus 233 ~~~l~~~Gf~~~~~~~~~~~~~ 254 (274)
...+. ||+++...+..-..+
T Consensus 156 ~~~y~--dW~il~y~E~~g~~h 175 (192)
T PF03848_consen 156 REYYA--DWEILKYNEDVGELH 175 (192)
T ss_dssp HHHTT--TSEEEEEEEEEEEEE
T ss_pred HHHhC--CCeEEEEEcccccee
Confidence 99988 599988766444444
No 11
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.83 E-value=3e-19 Score=150.07 Aligned_cols=172 Identities=17% Similarity=0.227 Sum_probs=129.9
Q ss_pred ccccchhHhhhcCCCCccCCCccHHHHHHHhcCC-CCCCeEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHh
Q 024021 73 ESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGA-LPKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELS 150 (274)
Q Consensus 73 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~ 150 (274)
..-..|+..|+.+... .+. .+....++.... .++.+|||+|||+|..+..+++ .+.+|+++|+++.+++.|+++.
T Consensus 19 ~~~~~~e~~~g~~~~~--~gg-~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~ 95 (263)
T PTZ00098 19 EGIKAYEFIFGEDYIS--SGG-IEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRN 95 (263)
T ss_pred ccchhHHHHhCCCCCC--CCc-hHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHc
Confidence 3345667777654432 122 233555665553 4557999999999999988876 5679999999999999999987
Q ss_pred hcCCCCcceEEEEcccCC-CCCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCC--------
Q 024021 151 SSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVG-------- 221 (274)
Q Consensus 151 ~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~-------- 221 (274)
... +++.+..+|+.+ +.++++||+|++..++.|++......+++++.++|+|||.+++.++.......
T Consensus 96 ~~~---~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~ 172 (263)
T PTZ00098 96 SDK---NKIEFEANDILKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAY 172 (263)
T ss_pred CcC---CceEEEECCcccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHH
Confidence 542 579999999987 45567899999999888887667789999999999999999998764432110
Q ss_pred ---CCCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024021 222 ---GPPYKVSVSDYEEVLQPMGFQAISIVDNK 250 (274)
Q Consensus 222 ---~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 250 (274)
......+.+++.++++++||+.+...+..
T Consensus 173 ~~~~~~~~~~~~~~~~~l~~aGF~~v~~~d~~ 204 (263)
T PTZ00098 173 IKKRKYTLIPIQEYGDLIKSCNFQNVVAKDIS 204 (263)
T ss_pred HHhcCCCCCCHHHHHHHHHHCCCCeeeEEeCc
Confidence 01122478999999999999999887643
No 12
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.83 E-value=1.8e-19 Score=146.71 Aligned_cols=138 Identities=22% Similarity=0.286 Sum_probs=117.2
Q ss_pred CCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEecccc
Q 024021 108 PKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFF 184 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~~~~ 184 (274)
++.+|||+|||||.++..+++. ..+|+++|+|+.|++.|+++....+..+ ++|+.+|+.+ +.++++||+|.+...+
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~LPf~D~sFD~vt~~fgl 129 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENLPFPDNSFDAVTISFGL 129 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhCCCCCCccCEEEeeehh
Confidence 6899999999999999999984 3699999999999999999998877665 9999999999 7788999999999999
Q ss_pred cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCC----------------------CC-----------CcccCHHH
Q 024021 185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVG----------------------GP-----------PYKVSVSD 231 (274)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~----------------------~~-----------~~~~~~~~ 231 (274)
.+++ +.+.+|++++|+|||||++++.++....... +. ..+.+.++
T Consensus 130 rnv~--d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~ 207 (238)
T COG2226 130 RNVT--DIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEE 207 (238)
T ss_pred hcCC--CHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCCCHHH
Confidence 9996 4578999999999999999999987653300 00 11248899
Q ss_pred HHHHHhcCCCcEEEEee
Q 024021 232 YEEVLQPMGFQAISIVD 248 (274)
Q Consensus 232 ~~~~l~~~Gf~~~~~~~ 248 (274)
+.++++++||..+....
T Consensus 208 l~~~~~~~gf~~i~~~~ 224 (238)
T COG2226 208 LKQMIEKAGFEEVRYEN 224 (238)
T ss_pred HHHHHHhcCceEEeeEe
Confidence 99999999999887433
No 13
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.82 E-value=6.6e-19 Score=141.64 Aligned_cols=154 Identities=10% Similarity=0.115 Sum_probs=119.1
Q ss_pred cHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCC
Q 024021 95 APIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTEL 174 (274)
Q Consensus 95 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 174 (274)
...+...+. ..++.+|||+|||+|.++..+++.|.+|+++|+++.+++.++++....+. ++.+...|+......++
T Consensus 19 ~~~l~~~~~--~~~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~ 94 (195)
T TIGR00477 19 HSAVREAVK--TVAPCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENL--PLRTDAYDINAAALNED 94 (195)
T ss_pred hHHHHHHhc--cCCCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCC--CceeEeccchhccccCC
Confidence 444555554 33467999999999999999999999999999999999999988776654 37777788765444568
Q ss_pred eeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC-CC--CCCcccCHHHHHHHHhcCCCcEEEEeeccc
Q 024021 175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH-VG--GPPYKVSVSDYEEVLQPMGFQAISIVDNKL 251 (274)
Q Consensus 175 ~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~ 251 (274)
||+|+++.++++++.+....+++.+.++|+|||++++..+..... .. ..++.++.+++.+++. +|+++.......
T Consensus 95 fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~~~~~~~el~~~f~--~~~~~~~~e~~~ 172 (195)
T TIGR00477 95 YDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCHMPFSFTFKEDELRQYYA--DWELLKYNEAVG 172 (195)
T ss_pred CCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCCCCcCccCCHHHHHHHhC--CCeEEEeecccc
Confidence 999999999999987788899999999999999966655432221 22 2345689999999997 599988876543
Q ss_pred ccC
Q 024021 252 AIG 254 (274)
Q Consensus 252 ~~~ 254 (274)
.++
T Consensus 173 ~~~ 175 (195)
T TIGR00477 173 ELH 175 (195)
T ss_pred ccc
Confidence 333
No 14
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.82 E-value=3.2e-20 Score=147.58 Aligned_cols=200 Identities=19% Similarity=0.227 Sum_probs=153.0
Q ss_pred hcccccchhHhhhcCCCCccCCCccHHHHH----HHhcCCCCCCeEEEEcCCcchhHHHhhC----CCCeEEEEeCChHH
Q 024021 71 HIESSGGWEKCWEEGLTPWDIGQPAPIIVH----LHQSGALPKGRALVPGCGTGYDVVAMAS----PERYVVGLEISDIA 142 (274)
Q Consensus 71 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~vLDiG~G~G~~~~~l~~----~~~~v~~vD~~~~~ 142 (274)
......+|+.+|..+...|. .-+..+.. ++........+|||+|||.|.....+.+ ++..++++|.||.+
T Consensus 32 ~~~~~k~wD~fy~~~~~rFf--kdR~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~A 109 (264)
T KOG2361|consen 32 EREASKYWDTFYKIHENRFF--KDRNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRA 109 (264)
T ss_pred hcchhhhhhhhhhhcccccc--chhHHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHH
Confidence 34566899999998766432 11222222 2222222234899999999999998887 34799999999999
Q ss_pred HHHHHHHhhcCCCCcceEEEEcccCC-----CCCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCC
Q 024021 143 IKKAEELSSSLPNAKFVSFLKADFFT-----WCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS 217 (274)
Q Consensus 143 ~~~a~~~~~~~~~~~~~~~~~~d~~~-----~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 217 (274)
++..+++..... .++.-...|+.. ....+++|+|++..++..++++....+++.+.++|||||.+++-+++..
T Consensus 110 i~~vk~~~~~~e--~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~ 187 (264)
T KOG2361|consen 110 IELVKKSSGYDE--SRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRY 187 (264)
T ss_pred HHHHHhccccch--hhhcccceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccc
Confidence 999999876554 456666666655 3456789999999999999999999999999999999999999998876
Q ss_pred CC-------------------CCCCCcccCHHHHHHHHhcCCCcEEEEeeccc-ccCCccchhHHHHhhhhhcccCC
Q 024021 218 DH-------------------VGGPPYKVSVSDYEEVLQPMGFQAISIVDNKL-AIGPRKGREKLGRWKRSVRHSLL 274 (274)
Q Consensus 218 ~~-------------------~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 274 (274)
+. .++..|+++.+++.++|+++||..++.....+ .........+.+.|.+..++.|+
T Consensus 188 DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~agf~~~~~~~~~rl~vNr~k~lkm~Rvwvq~~f~k~~ 264 (264)
T KOG2361|consen 188 DLAQLRFKKGQCISENFYVRGDGTRAYFFTEEELDELFTKAGFEEVQLEVDCRLLVNRKKQLKMYRVWVQAKFQKPL 264 (264)
T ss_pred hHHHHhccCCceeecceEEccCCceeeeccHHHHHHHHHhcccchhcccceeeeeeehhccCccceEEEEEEeecCC
Confidence 43 23345889999999999999999999866554 44444467888899999888764
No 15
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.82 E-value=2.5e-19 Score=150.46 Aligned_cols=165 Identities=22% Similarity=0.253 Sum_probs=123.4
Q ss_pred HHHHHhcCC-CCCCeEEEEcCCcchhHHHhhCC-CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCe
Q 024021 98 IVHLHQSGA-LPKGRALVPGCGTGYDVVAMASP-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELF 175 (274)
Q Consensus 98 ~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 175 (274)
+..+++... .++.+|||||||.|.++..+++. |++|+|+++|+++.+.+++++...++.+++++...|..+... +|
T Consensus 51 ~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~--~f 128 (273)
T PF02353_consen 51 LDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG--KF 128 (273)
T ss_dssp HHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-----S-
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC--CC
Confidence 444455443 45679999999999999999996 999999999999999999999999998899999999987543 89
Q ss_pred eEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC------C-----------CCCCcccCHHHHHHHHhc
Q 024021 176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH------V-----------GGPPYKVSVSDYEEVLQP 238 (274)
Q Consensus 176 D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~------~-----------~~~~~~~~~~~~~~~l~~ 238 (274)
|.|++..+++|+.......+++++.++|+|||++++-....... . +|. ..++.+++...++.
T Consensus 129 D~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~kyiFPgg-~lps~~~~~~~~~~ 207 (273)
T PF02353_consen 129 DRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKYIFPGG-YLPSLSEILRAAED 207 (273)
T ss_dssp SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS----BHHHHHHHHHH
T ss_pred CEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEeeCCCC-CCCCHHHHHHHHhc
Confidence 99999999999988888999999999999999998765543321 0 111 12478899999999
Q ss_pred CCCcEEEEeecccccCCccchhHHHHhhhhhc
Q 024021 239 MGFQAISIVDNKLAIGPRKGREKLGRWKRSVR 270 (274)
Q Consensus 239 ~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (274)
.||++..+......+ .+++..|.+.+.
T Consensus 208 ~~l~v~~~~~~~~hY-----~~Tl~~W~~~f~ 234 (273)
T PF02353_consen 208 AGLEVEDVENLGRHY-----ARTLRAWRENFD 234 (273)
T ss_dssp TT-EEEEEEE-HHHH-----HHHHHHHHHHHH
T ss_pred CCEEEEEEEEcCcCH-----HHHHHHHHHHHH
Confidence 999999888765444 478888887653
No 16
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.82 E-value=3.4e-19 Score=152.65 Aligned_cols=141 Identities=15% Similarity=0.166 Sum_probs=114.7
Q ss_pred CCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCCeeEEEecccccc
Q 024021 108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTFFCA 186 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~~~~ 186 (274)
++.+|||+|||+|.++..+++.|.+|+|+|+++++++.|+.+....+...+++++.+|+.+. ...++||+|++..+++|
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeH 210 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEH 210 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHHh
Confidence 45699999999999999999999999999999999999998865544445799999998773 34568999999999999
Q ss_pred cChhHHHHHHHHHHhcccCCcEEEEEEccCCC----------------CCCC-C--CcccCHHHHHHHHhcCCCcEEEEe
Q 024021 187 IEPEMRAAWAQKIKDFLKPDGELITLMFPISD----------------HVGG-P--PYKVSVSDYEEVLQPMGFQAISIV 247 (274)
Q Consensus 187 ~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~----------------~~~~-~--~~~~~~~~~~~~l~~~Gf~~~~~~ 247 (274)
+++. ..+++.+.++|+|||.+++.+..... ...+ . ..+++++++.++++++||+++.+.
T Consensus 211 v~d~--~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~~ 288 (322)
T PLN02396 211 VANP--AEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEMA 288 (322)
T ss_pred cCCH--HHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEEe
Confidence 9654 57999999999999999998754421 0111 1 124689999999999999998875
Q ss_pred ecc
Q 024021 248 DNK 250 (274)
Q Consensus 248 ~~~ 250 (274)
-..
T Consensus 289 G~~ 291 (322)
T PLN02396 289 GFV 291 (322)
T ss_pred eeE
Confidence 533
No 17
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.81 E-value=3.9e-19 Score=130.22 Aligned_cols=106 Identities=31% Similarity=0.430 Sum_probs=91.7
Q ss_pred CCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEccc-CCCCCCCCeeEEEecc-c
Q 024021 108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADF-FTWCPTELFDLIFDYT-F 183 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~D~v~~~~-~ 183 (274)
|+.+|||+|||+|..+..+++ ++.+++++|+++++++.|+++....+..++++++.+|+ ......++||+|++.. .
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFT 80 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCc
Confidence 468999999999999999999 89999999999999999999996666678999999999 4455566799999999 5
Q ss_pred ccccC-hhHHHHHHHHHHhcccCCcEEEEEE
Q 024021 184 FCAIE-PEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 184 ~~~~~-~~~~~~~l~~~~~~L~pgG~~~~~~ 213 (274)
++++. .+....+++++.+.|+|||++++..
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 55333 2567889999999999999999865
No 18
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.81 E-value=1.3e-18 Score=146.09 Aligned_cols=141 Identities=19% Similarity=0.160 Sum_probs=111.7
Q ss_pred CCCCeEEEEcCCcchhHHHhhCC---CCeEEEEeCChHHHHHHHHHhhc--CCCCcceEEEEcccCC-CCCCCCeeEEEe
Q 024021 107 LPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSS--LPNAKFVSFLKADFFT-WCPTELFDLIFD 180 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~--~~~~~~~~~~~~d~~~-~~~~~~~D~v~~ 180 (274)
.++.+|||+|||+|..+..+++. ..+|+|+|+|++|++.|+++... .....+++++.+|+.+ +.++++||+|++
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~ 151 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITM 151 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEE
Confidence 45679999999999999888762 35999999999999999887542 1223579999999988 455678999999
Q ss_pred cccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCC--------------------C--C---------CcccCH
Q 024021 181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVG--------------------G--P---------PYKVSV 229 (274)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~--------------------~--~---------~~~~~~ 229 (274)
..+++++++ ...+++++.++|+|||++++.++....... + . ..+.+.
T Consensus 152 ~~~l~~~~d--~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~f~s~ 229 (261)
T PLN02233 152 GYGLRNVVD--RLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEWMIDNVVVPVATGYGLAKEYEYLKSSINEYLTG 229 (261)
T ss_pred ecccccCCC--HHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHHHHHhhhhhHHHHHhCChHHHHHHHHHHHhcCCH
Confidence 999999863 467899999999999999998876543200 0 0 123589
Q ss_pred HHHHHHHhcCCCcEEEEeec
Q 024021 230 SDYEEVLQPMGFQAISIVDN 249 (274)
Q Consensus 230 ~~~~~~l~~~Gf~~~~~~~~ 249 (274)
+++.++++++||+.+.....
T Consensus 230 ~el~~ll~~aGF~~~~~~~~ 249 (261)
T PLN02233 230 EELEKLALEAGFSSAKHYEI 249 (261)
T ss_pred HHHHHHHHHCCCCEEEEEEc
Confidence 99999999999999876553
No 19
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.80 E-value=1.6e-18 Score=144.64 Aligned_cols=108 Identities=18% Similarity=0.215 Sum_probs=93.6
Q ss_pred CCCCCeEEEEcCCcchhHHHhhC----CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEec
Q 024021 106 ALPKGRALVPGCGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDY 181 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~ 181 (274)
..++.+|||+|||+|..+..+++ ++.+++++|+|+.+++.|+++....+...+++++.+|+.+... ..+|+|+++
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~-~~~D~vv~~ 132 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI-ENASMVVLN 132 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC-CCCCEEehh
Confidence 34568999999999999887764 5789999999999999999999876665689999999987443 359999999
Q ss_pred ccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021 182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (274)
Q Consensus 182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 214 (274)
.++++++++....++++++++|+|||.+++.+.
T Consensus 133 ~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 133 FTLQFLEPSERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred hHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 999999877778999999999999999999773
No 20
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.79 E-value=6.5e-18 Score=143.93 Aligned_cols=150 Identities=15% Similarity=0.225 Sum_probs=118.9
Q ss_pred cHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCC
Q 024021 95 APIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTEL 174 (274)
Q Consensus 95 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 174 (274)
...+...+.. .++.+|||+|||+|.++..+++.|.+|+|+|+|+.+++.++++....+. ++++...|+.....+++
T Consensus 109 ~~~~~~~~~~--~~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~~~~~ 184 (287)
T PRK12335 109 HSEVLEAVQT--VKPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSASIQEE 184 (287)
T ss_pred cHHHHHHhhc--cCCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhcccccCC
Confidence 3334444442 3456999999999999999999999999999999999999999877664 58888888877545678
Q ss_pred eeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE-ccCCCCCCCC--CcccCHHHHHHHHhcCCCcEEEEeecc
Q 024021 175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM-FPISDHVGGP--PYKVSVSDYEEVLQPMGFQAISIVDNK 250 (274)
Q Consensus 175 ~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 250 (274)
||+|++..++++++++....+++.+.++|+|||++++.. +...+..... ++.++.+++.+.++. |+++...+..
T Consensus 185 fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~~--~~i~~~~e~~ 261 (287)
T PRK12335 185 YDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQD--WEIVKYNENV 261 (287)
T ss_pred ccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhCC--CEEEEEeccc
Confidence 999999999999988888899999999999999976654 3322222122 455789999999975 9998886543
No 21
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.78 E-value=7.2e-18 Score=143.91 Aligned_cols=145 Identities=21% Similarity=0.275 Sum_probs=110.1
Q ss_pred CCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccc
Q 024021 106 ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF 184 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~ 184 (274)
..++++|||+|||+|..+..++..|. .|+|+|+|+.++..++..........++.+..+++.+..+...||+|++++++
T Consensus 119 ~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~FD~V~s~gvL 198 (314)
T TIGR00452 119 PLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAFDTVFSMGVL 198 (314)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCcCEEEEcchh
Confidence 45678999999999999988888776 79999999999876543222111224688888888775555689999999999
Q ss_pred cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCC-------------CCCCcccCHHHHHHHHhcCCCcEEEEeeccc
Q 024021 185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHV-------------GGPPYKVSVSDYEEVLQPMGFQAISIVDNKL 251 (274)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~ 251 (274)
+|+++. ..++.+++++|+|||.+++.+....... .+..+..+..++..+++++||+.+++.....
T Consensus 199 ~H~~dp--~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~V~i~~~~~ 276 (314)
T TIGR00452 199 YHRKSP--LEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFENFRILDVLK 276 (314)
T ss_pred hccCCH--HHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeEEEEEeccC
Confidence 998543 5789999999999999998764332110 1123345889999999999999999877554
Q ss_pred c
Q 024021 252 A 252 (274)
Q Consensus 252 ~ 252 (274)
.
T Consensus 277 t 277 (314)
T TIGR00452 277 T 277 (314)
T ss_pred C
Confidence 4
No 22
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.78 E-value=5.1e-18 Score=139.68 Aligned_cols=142 Identities=24% Similarity=0.326 Sum_probs=116.6
Q ss_pred CeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccccc
Q 024021 110 GRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAI 187 (274)
Q Consensus 110 ~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~ 187 (274)
.+|||+|||+|..+..+++ ++.+++|+|+++++++.++++....+..++++++..|+......++||+|++..+++++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 3799999999999998877 35799999999999999999998877778899999999764335689999999999998
Q ss_pred ChhHHHHHHHHHHhcccCCcEEEEEEccCCC-----CCCCCCcccCHHHHHHHHhcCCCcEEEEeeccccc
Q 024021 188 EPEMRAAWAQKIKDFLKPDGELITLMFPISD-----HVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAI 253 (274)
Q Consensus 188 ~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~ 253 (274)
++ ...+++.+.++|+|||.+++.++.... ......+..+.+++.++++++||++++.......+
T Consensus 81 ~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~~~~~~ 149 (224)
T smart00828 81 KD--KMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGVDASLEI 149 (224)
T ss_pred CC--HHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeEECcHhH
Confidence 53 468999999999999999998764321 11122345688999999999999999988765544
No 23
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.78 E-value=7.8e-18 Score=145.14 Aligned_cols=145 Identities=24% Similarity=0.349 Sum_probs=110.6
Q ss_pred CCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccc
Q 024021 106 ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF 184 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~ 184 (274)
..++.+|||+|||+|..+..++..+. .|+|+|+++.++..++......+...+++++.+|+.+....+.||+|++..++
T Consensus 120 ~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~FD~V~s~~vl 199 (322)
T PRK15068 120 PLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAFDTVFSMGVL 199 (322)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCcCEEEECChh
Confidence 35678999999999999999988765 69999999998876544322222224799999999875446789999999999
Q ss_pred cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCC-------------CCCCcccCHHHHHHHHhcCCCcEEEEeeccc
Q 024021 185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHV-------------GGPPYKVSVSDYEEVLQPMGFQAISIVDNKL 251 (274)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~ 251 (274)
+|+.+ ...+++++++.|+|||.+++..+...... .+..+..+.+++..+++++||+.+.+.....
T Consensus 200 ~H~~d--p~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i~~~~~~~ 277 (322)
T PRK15068 200 YHRRS--PLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKDVRIVDVSV 277 (322)
T ss_pred hccCC--HHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCceEEEEeCCC
Confidence 98853 35789999999999999998654322110 1112334889999999999999999877554
Q ss_pred c
Q 024021 252 A 252 (274)
Q Consensus 252 ~ 252 (274)
.
T Consensus 278 t 278 (322)
T PRK15068 278 T 278 (322)
T ss_pred C
Confidence 3
No 24
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.78 E-value=1.8e-18 Score=138.66 Aligned_cols=138 Identities=17% Similarity=0.189 Sum_probs=113.5
Q ss_pred CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-CCCeeEEEeccccc
Q 024021 107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-TELFDLIFDYTFFC 185 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~~~ 185 (274)
.++.+|||+|||-|.++..+++.|+.|+|+|+++.+++.|+.+..+.++ .+++....+.+... .++||+|+|..+++
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv--~i~y~~~~~edl~~~~~~FDvV~cmEVlE 135 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGV--NIDYRQATVEDLASAGGQFDVVTCMEVLE 135 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhccc--cccchhhhHHHHHhcCCCccEEEEhhHHH
Confidence 5789999999999999999999999999999999999999999988774 36677777776433 37999999999999
Q ss_pred ccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC----------------CCCC---CcccCHHHHHHHHhcCCCcEEEE
Q 024021 186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH----------------VGGP---PYKVSVSDYEEVLQPMGFQAISI 246 (274)
Q Consensus 186 ~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~----------------~~~~---~~~~~~~~~~~~l~~~Gf~~~~~ 246 (274)
|++++ ..++..+.+.+||||.+++.+...... +.+. .-.+.++|+..++...|+.+.+.
T Consensus 136 Hv~dp--~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~~~~~~ 213 (243)
T COG2227 136 HVPDP--ESFLRACAKLVKPGGILFLSTINRTLKAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANLKIIDR 213 (243)
T ss_pred ccCCH--HHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCceEEee
Confidence 99765 469999999999999999988664321 1111 12257899999999999988776
Q ss_pred ee
Q 024021 247 VD 248 (274)
Q Consensus 247 ~~ 248 (274)
.-
T Consensus 214 ~g 215 (243)
T COG2227 214 KG 215 (243)
T ss_pred cc
Confidence 54
No 25
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.77 E-value=1.5e-17 Score=138.24 Aligned_cols=138 Identities=17% Similarity=0.206 Sum_probs=110.5
Q ss_pred CCCCeEEEEcCCcchhHHHhhC----CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecc
Q 024021 107 LPKGRALVPGCGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYT 182 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~ 182 (274)
.++.+|||+|||+|..+..+++ ++.+++|+|+++.+++.|+++....+...+++++.+|+.+... ..+|+|++..
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~d~v~~~~ 130 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI-KNASMVILNF 130 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC-CCCCEEeeec
Confidence 4567999999999999988875 4779999999999999999998765544579999999987543 3589999999
Q ss_pred cccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCC----------------C---------------CCCcccCHHH
Q 024021 183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHV----------------G---------------GPPYKVSVSD 231 (274)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~----------------~---------------~~~~~~~~~~ 231 (274)
++++++++....+++++.++|+|||.+++.+....... . +..+..+.++
T Consensus 131 ~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~ 210 (239)
T TIGR00740 131 TLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEISQKRTALENVMRTDSIET 210 (239)
T ss_pred chhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCCHHH
Confidence 99999877788999999999999999999864322110 0 1123457889
Q ss_pred HHHHHhcCCCcEEE
Q 024021 232 YEEVLQPMGFQAIS 245 (274)
Q Consensus 232 ~~~~l~~~Gf~~~~ 245 (274)
+.++++++||..+.
T Consensus 211 ~~~~l~~aGF~~~~ 224 (239)
T TIGR00740 211 HKARLKNVGFSHVE 224 (239)
T ss_pred HHHHHHHcCCchHH
Confidence 99999999998544
No 26
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.77 E-value=2.4e-17 Score=136.36 Aligned_cols=150 Identities=17% Similarity=0.188 Sum_probs=115.2
Q ss_pred HHHHhcCC-CCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCC
Q 024021 99 VHLHQSGA-LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTE 173 (274)
Q Consensus 99 ~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~ 173 (274)
..++.... .++.+|||+|||+|.++..+++ ++.+|+|+|+++.+++.++++....+. ++++++.+|+... .+.+
T Consensus 35 ~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~ 113 (231)
T TIGR02752 35 KDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMELPFDDN 113 (231)
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechhcCCCCCC
Confidence 33444333 3467999999999999998876 356999999999999999999876554 5799999999873 4567
Q ss_pred CeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCC--------------------------------
Q 024021 174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVG-------------------------------- 221 (274)
Q Consensus 174 ~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~-------------------------------- 221 (274)
+||+|++..+++++++ ...+++++.++|+|||.+++.+........
T Consensus 114 ~fD~V~~~~~l~~~~~--~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 191 (231)
T TIGR02752 114 SFDYVTIGFGLRNVPD--YMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQE 191 (231)
T ss_pred CccEEEEecccccCCC--HHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcChhHHhhHHhcCCHHHHHHHHH
Confidence 8999999999888754 357899999999999999987754322100
Q ss_pred CCCcccCHHHHHHHHhcCCCcEEEEeeccc
Q 024021 222 GPPYKVSVSDYEEVLQPMGFQAISIVDNKL 251 (274)
Q Consensus 222 ~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~ 251 (274)
.....++.+++.++++++||+.+++.....
T Consensus 192 ~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~ 221 (231)
T TIGR02752 192 STRDFPGMDELAEMFQEAGFKDVEVKSYTG 221 (231)
T ss_pred HHHHcCCHHHHHHHHHHcCCCeeEEEEccc
Confidence 001123678999999999999998877553
No 27
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.75 E-value=3.3e-17 Score=137.46 Aligned_cols=157 Identities=17% Similarity=0.153 Sum_probs=113.7
Q ss_pred HHHHhcCC-CCCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCe
Q 024021 99 VHLHQSGA-LPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELF 175 (274)
Q Consensus 99 ~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 175 (274)
..++.... .++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++. +++++.+|+.+..+.++|
T Consensus 19 ~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~f 90 (255)
T PRK14103 19 YDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER--------GVDARTGDVRDWKPKPDT 90 (255)
T ss_pred HHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCCCCCCc
Confidence 34444443 45689999999999999999874 77999999999999999763 378899999876566789
Q ss_pred eEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC------------------CCCC-----CcccCHHHH
Q 024021 176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH------------------VGGP-----PYKVSVSDY 232 (274)
Q Consensus 176 D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~------------------~~~~-----~~~~~~~~~ 232 (274)
|+|+++.+++++++ ...++.++.++|+|||.+++........ .... ....+.+++
T Consensus 91 D~v~~~~~l~~~~d--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 168 (255)
T PRK14103 91 DVVVSNAALQWVPE--HADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGY 168 (255)
T ss_pred eEEEEehhhhhCCC--HHHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHH
Confidence 99999999999864 3678999999999999998865432110 0001 123478999
Q ss_pred HHHHhcCCCcEEEEeecccccCCccchhHHHHhhh
Q 024021 233 EEVLQPMGFQAISIVDNKLAIGPRKGREKLGRWKR 267 (274)
Q Consensus 233 ~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (274)
.++|+++||++..... ... ....+.+.+..|.+
T Consensus 169 ~~~l~~aGf~v~~~~~-~~~-~~~~~~~~~~~~~~ 201 (255)
T PRK14103 169 AELLTDAGCKVDAWET-TYV-HQLTGEDPVLDWIT 201 (255)
T ss_pred HHHHHhCCCeEEEEee-eee-eeCCCchhhhhhhh
Confidence 9999999998644333 111 12233444555554
No 28
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.75 E-value=6.4e-17 Score=132.69 Aligned_cols=145 Identities=19% Similarity=0.216 Sum_probs=113.8
Q ss_pred CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccc
Q 024021 107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA 186 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~ 186 (274)
.++.+|||+|||+|..+..+++.+.+++|+|++++++..|+++....+...++.+..+|+.+.. ++||+|++..++.+
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~fD~ii~~~~l~~ 131 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC--GEFDIVVCMDVLIH 131 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC--CCcCEEEEhhHHHh
Confidence 3468999999999999999998888999999999999999999876655457999999987754 78999999999988
Q ss_pred cChhHHHHHHHHHHhcccCCcEEEEEEccCC-------------CCCCCCCcccCHHHHHHHHhcCCCcEEEEeeccccc
Q 024021 187 IEPEMRAAWAQKIKDFLKPDGELITLMFPIS-------------DHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAI 253 (274)
Q Consensus 187 ~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~ 253 (274)
++++....++.++.+++++++++.+...... .......+.++.+++.++++++||+++........+
T Consensus 132 ~~~~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~~~~~~ 211 (219)
T TIGR02021 132 YPASDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREGLVSTGF 211 (219)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeeecccccc
Confidence 8777778899999999887655554322110 000111234689999999999999999887655443
No 29
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.75 E-value=2.2e-17 Score=128.57 Aligned_cols=135 Identities=27% Similarity=0.348 Sum_probs=104.1
Q ss_pred HHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCe
Q 024021 97 IIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELF 175 (274)
Q Consensus 97 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~ 175 (274)
.+..+... ..++.+|||+|||+|.++..+++.+.+++|+|+++.+++. .++.....+... ..+.++|
T Consensus 12 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~f 79 (161)
T PF13489_consen 12 LLERLLPR-LKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK-----------RNVVFDNFDAQDPPFPDGSF 79 (161)
T ss_dssp HHHHHHTC-TTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH-----------TTSEEEEEECHTHHCHSSSE
T ss_pred HHHHHhcc-cCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh-----------hhhhhhhhhhhhhhccccch
Confidence 34444432 3556899999999999999998888999999999999988 112333332223 4556799
Q ss_pred eEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC-------------CCCCCcccCHHHHHHHHhcCCCc
Q 024021 176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH-------------VGGPPYKVSVSDYEEVLQPMGFQ 242 (274)
Q Consensus 176 D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~l~~~Gf~ 242 (274)
|+|+++.+++|++ +...+++.+.++|+|||++++........ ..+....++.+++.++++++||+
T Consensus 80 D~i~~~~~l~~~~--d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~ 157 (161)
T PF13489_consen 80 DLIICNDVLEHLP--DPEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFE 157 (161)
T ss_dssp EEEEEESSGGGSS--HHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEE
T ss_pred hhHhhHHHHhhcc--cHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCE
Confidence 9999999999997 46789999999999999999988765310 11233457999999999999999
Q ss_pred EEE
Q 024021 243 AIS 245 (274)
Q Consensus 243 ~~~ 245 (274)
+++
T Consensus 158 iv~ 160 (161)
T PF13489_consen 158 IVE 160 (161)
T ss_dssp EEE
T ss_pred EEE
Confidence 875
No 30
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.74 E-value=4.5e-17 Score=148.45 Aligned_cols=169 Identities=24% Similarity=0.277 Sum_probs=123.7
Q ss_pred cchhHhhhcCCCCccCCCccHHHHHHHhcCC-CCCCeEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcC
Q 024021 76 GGWEKCWEEGLTPWDIGQPAPIIVHLHQSGA-LPKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSL 153 (274)
Q Consensus 76 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~ 153 (274)
..|..+|+.+..- .........+++... .++.+|||+|||+|..+..+++ .+.+|+|+|+|+.+++.|+++....
T Consensus 236 ~~~~~f~g~~~~v---~~~v~~te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~ 312 (475)
T PLN02336 236 LRYERVFGEGFVS---TGGLETTKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGR 312 (475)
T ss_pred HHHHHHhCCCCCC---CchHHHHHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcC
Confidence 3466666543321 111112344444433 3457999999999999988876 5779999999999999999886533
Q ss_pred CCCcceEEEEcccCCC-CCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCC---------
Q 024021 154 PNAKFVSFLKADFFTW-CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGP--------- 223 (274)
Q Consensus 154 ~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~--------- 223 (274)
..+++|..+|+... .+.++||+|++..+++|+++ ...++++++++|+|||.+++.++.........
T Consensus 313 --~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~h~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~ 388 (475)
T PLN02336 313 --KCSVEFEVADCTKKTYPDNSFDVIYSRDTILHIQD--KPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQR 388 (475)
T ss_pred --CCceEEEEcCcccCCCCCCCEEEEEECCcccccCC--HHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhc
Confidence 35799999999874 45678999999999999864 46789999999999999999876543211110
Q ss_pred -CcccCHHHHHHHHhcCCCcEEEEeeccc
Q 024021 224 -PYKVSVSDYEEVLQPMGFQAISIVDNKL 251 (274)
Q Consensus 224 -~~~~~~~~~~~~l~~~Gf~~~~~~~~~~ 251 (274)
....+.+++.++++++||.++.+++...
T Consensus 389 g~~~~~~~~~~~~l~~aGF~~i~~~d~~~ 417 (475)
T PLN02336 389 GYDLHDVQAYGQMLKDAGFDDVIAEDRTD 417 (475)
T ss_pred CCCCCCHHHHHHHHHHCCCeeeeeecchH
Confidence 1234789999999999999998766443
No 31
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.74 E-value=2.7e-16 Score=134.43 Aligned_cols=185 Identities=17% Similarity=0.219 Sum_probs=123.8
Q ss_pred HHHHHHHHhhcccccchhHhhhcCCC----CccCC----CccHHHHHHHhcC-CCCCCeEEEEcCCcchhHHHhhCCCCe
Q 024021 62 RVNKLQQLMHIESSGGWEKCWEEGLT----PWDIG----QPAPIIVHLHQSG-ALPKGRALVPGCGTGYDVVAMASPERY 132 (274)
Q Consensus 62 ~~~~~~~~~~~~~~~~w~~~~~~~~~----~~~~~----~~~~~~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~ 132 (274)
..+....++.+.....|...|+.... .++.. .....+..++... ..++.+|||+|||+|.++..+++.|.+
T Consensus 89 ~~~~V~~~Fd~~a~~~w~~iy~~~d~v~~~~l~~~~~~~~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~~ 168 (315)
T PLN02585 89 DKEVVREYFNTTGFERWRKIYGETDEVNKVQLDIRLGHAQTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGAI 168 (315)
T ss_pred HHHHHHHHhcccchhhHHHhcCCccccCceeeecccChHHHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCCE
Confidence 34455566654445667777776221 11211 1112233344322 235679999999999999999999999
Q ss_pred EEEEeCChHHHHHHHHHhhcCC----CCcceEEEEcccCCCCCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcE
Q 024021 133 VVGLEISDIAIKKAEELSSSLP----NAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGE 208 (274)
Q Consensus 133 v~~vD~~~~~~~~a~~~~~~~~----~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~ 208 (274)
|+|+|+|+.+++.++++..... ...+++|...|+... .++||+|++..+++|++++....++..+.+ +.+||.
T Consensus 169 V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l--~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~l 245 (315)
T PLN02585 169 VSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL--SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRL 245 (315)
T ss_pred EEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc--CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEE
Confidence 9999999999999999876541 123578888887644 478999999999998877666667777775 455555
Q ss_pred EEEEEccCCC----------CCCCC-----CcccCHHHHHHHHhcCCCcEEEEeecc
Q 024021 209 LITLMFPISD----------HVGGP-----PYKVSVSDYEEVLQPMGFQAISIVDNK 250 (274)
Q Consensus 209 ~~~~~~~~~~----------~~~~~-----~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 250 (274)
++. ...... ...++ .+..+.+++.++++++||+++..+...
T Consensus 246 iIs-~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v~~~~~~~ 301 (315)
T PLN02585 246 IIS-FAPKTLYYDILKRIGELFPGPSKATRAYLHAEADVERALKKAGWKVARREMTA 301 (315)
T ss_pred EEE-eCCcchHHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCCEEEEEEEee
Confidence 443 321110 01121 233479999999999999988765433
No 32
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.73 E-value=4.1e-17 Score=124.34 Aligned_cols=163 Identities=20% Similarity=0.291 Sum_probs=126.3
Q ss_pred cchhHhhhcCCC----------CccCCCccHHHHHHHhcC------CCCCCeEEEEcCCcchhHHHhhCCCC--eEEEEe
Q 024021 76 GGWEKCWEEGLT----------PWDIGQPAPIIVHLHQSG------ALPKGRALVPGCGTGYDVVAMASPER--YVVGLE 137 (274)
Q Consensus 76 ~~w~~~~~~~~~----------~~~~~~~~~~~~~~~~~~------~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD 137 (274)
.||++.|..... -|........+..++... .....+|||+|||.|.++..|++.|. ..+|+|
T Consensus 19 ~yWD~~Y~~El~Nfr~hgd~GEvWFg~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvD 98 (227)
T KOG1271|consen 19 SYWDAAYELELTNFREHGDEGEVWFGEDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVD 98 (227)
T ss_pred HHHHHHHHHHHhhcccCCCccceecCCcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccc
Confidence 577777765222 355444445555555432 12234999999999999999999776 489999
Q ss_pred CChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEecccccccC--h----hHHHHHHHHHHhcccCCcEEE
Q 024021 138 ISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFFCAIE--P----EMRAAWAQKIKDFLKPDGELI 210 (274)
Q Consensus 138 ~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~~~~~~~~--~----~~~~~~l~~~~~~L~pgG~~~ 210 (274)
+|+.+++.|+...+..+.++.++|.+.|+.+ ....++||+|+..+.+..+. + ..+..++..+.+.|+|||+++
T Consensus 99 Ys~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifv 178 (227)
T KOG1271|consen 99 YSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFV 178 (227)
T ss_pred cCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEE
Confidence 9999999999999988888889999999998 44567899999998887752 1 233678899999999999999
Q ss_pred EEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeec
Q 024021 211 TLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDN 249 (274)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 249 (274)
+...+ ++.+|+.+.++..||......+.
T Consensus 179 ItSCN-----------~T~dELv~~f~~~~f~~~~tvp~ 206 (227)
T KOG1271|consen 179 ITSCN-----------FTKDELVEEFENFNFEYLSTVPT 206 (227)
T ss_pred EEecC-----------ccHHHHHHHHhcCCeEEEEeecc
Confidence 97643 37999999999999888765543
No 33
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.73 E-value=3.6e-16 Score=129.19 Aligned_cols=188 Identities=14% Similarity=0.139 Sum_probs=129.3
Q ss_pred HHHHHHHhhcccccchhHhhhcCCCCccCC----Cc---cHHHHHHHhcC-CCCCCeEEEEcCCcchhHHHhhCCCCeEE
Q 024021 63 VNKLQQLMHIESSGGWEKCWEEGLTPWDIG----QP---APIIVHLHQSG-ALPKGRALVPGCGTGYDVVAMASPERYVV 134 (274)
Q Consensus 63 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~----~~---~~~~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~v~ 134 (274)
...+.+.+.+...+.|...|.......... .. ...+..++... ..++.+|||+|||+|..+..+++.+..|+
T Consensus 10 ~~~v~~~~~~~~~~~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~~~v~ 89 (230)
T PRK07580 10 KSEVRTYFNRTGFDRWARIYSDAPVSKVRATVRAGHQRMRDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRGAKVV 89 (230)
T ss_pred hhhhhHHHhhhccchHHHhhCcCchhHHHHHhcchHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcCCEEE
Confidence 345555666555688988887643321100 01 11223333321 23567999999999999999998888999
Q ss_pred EEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021 135 GLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (274)
Q Consensus 135 ~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 214 (274)
++|+++.+++.|+++....+..+++.+..+|+.. ..++||+|++..++++++++....+++.+.+.+++++.+.+...
T Consensus 90 ~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~ 167 (230)
T PRK07580 90 ASDISPQMVEEARERAPEAGLAGNITFEVGDLES--LLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFTFAPY 167 (230)
T ss_pred EEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh--ccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEEECCc
Confidence 9999999999999998776655679999999543 24679999999999888877788888999887754444332211
Q ss_pred cCC-------------CCCCCCCcccCHHHHHHHHhcCCCcEEEEeecccc
Q 024021 215 PIS-------------DHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLA 252 (274)
Q Consensus 215 ~~~-------------~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~ 252 (274)
... ..........+..++.++++.+||++.........
T Consensus 168 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~ 218 (230)
T PRK07580 168 TPLLALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKVVRTERISSG 218 (230)
T ss_pred cHHHHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCceEeeeeccch
Confidence 100 00111123457899999999999999988775543
No 34
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.72 E-value=2.1e-16 Score=126.82 Aligned_cols=137 Identities=16% Similarity=0.132 Sum_probs=112.6
Q ss_pred CCCCeEEEEcCCcchhHHHhhC--------CCCeEEEEeCChHHHHHHHHHhhcCCCCcc--eEEEEcccCC-CCCCCCe
Q 024021 107 LPKGRALVPGCGTGYDVVAMAS--------PERYVVGLEISDIAIKKAEELSSSLPNAKF--VSFLKADFFT-WCPTELF 175 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~--------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~--~~~~~~d~~~-~~~~~~~ 175 (274)
..++++||++||||..+..+.+ .+.+|+++|++|+|++.++++....++..+ +.++.+|+.+ +++++.|
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~ 178 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSF 178 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcc
Confidence 3458999999999999988876 236899999999999999999876655444 9999999999 6778899
Q ss_pred eEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCC----------------CC----------------C
Q 024021 176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHV----------------GG----------------P 223 (274)
Q Consensus 176 D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~----------------~~----------------~ 223 (274)
|.+...+.+..++ +.++.+++++|+|||||++.+.+|+..+.. .| .
T Consensus 179 D~yTiafGIRN~t--h~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLveSI 256 (296)
T KOG1540|consen 179 DAYTIAFGIRNVT--HIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVESI 256 (296)
T ss_pred eeEEEecceecCC--CHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhhhchhhHhhhhhHhhhhhHHhhh
Confidence 9999999888885 456899999999999999999998876520 00 0
Q ss_pred CcccCHHHHHHHHhcCCCcEEE
Q 024021 224 PYKVSVSDYEEVLQPMGFQAIS 245 (274)
Q Consensus 224 ~~~~~~~~~~~~l~~~Gf~~~~ 245 (274)
..+.+.+++..+.+++||..+.
T Consensus 257 ~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 257 RRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred hcCCCHHHHHHHHHHcCCcccc
Confidence 1123789999999999999876
No 35
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.72 E-value=2.2e-16 Score=135.91 Aligned_cols=136 Identities=19% Similarity=0.236 Sum_probs=110.8
Q ss_pred CCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccc
Q 024021 108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC 185 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~ 185 (274)
+..+|||+|||+|..+..+++ ++.+++++|. +.+++.++++....+..++++++.+|+++...+ .+|+|++..+++
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~-~~D~v~~~~~lh 226 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP-EADAVLFCRILY 226 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCC-CCCEEEeEhhhh
Confidence 347999999999999998887 5679999997 899999999998888878999999999863322 379999999999
Q ss_pred ccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCC------------------cccCHHHHHHHHhcCCCcEEEE
Q 024021 186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPP------------------YKVSVSDYEEVLQPMGFQAISI 246 (274)
Q Consensus 186 ~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~l~~~Gf~~~~~ 246 (274)
+++++....++++++++|+|||++++.++...+.. .+. -....+++.++++++||+.+.+
T Consensus 227 ~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~aGf~~v~~ 304 (306)
T TIGR02716 227 SANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPE-NPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESLGYKDVTM 304 (306)
T ss_pred cCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCC-CchhhHHHHHHHHcccccccccCCCHHHHHHHHHHcCCCeeEe
Confidence 88877778899999999999999999887443321 110 0123689999999999988765
No 36
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.72 E-value=6.9e-17 Score=114.31 Aligned_cols=93 Identities=31% Similarity=0.422 Sum_probs=80.3
Q ss_pred EEEcCCcchhHHHhhCC-CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEecccccccChh
Q 024021 113 LVPGCGTGYDVVAMASP-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFFCAIEPE 190 (274)
Q Consensus 113 LDiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~~~~~~~~~~ 190 (274)
||+|||+|..+..+++. +.+++++|+++++++.++++.... ++.+..+|+.+ +.++++||+|++..+++++ +
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~----~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~--~ 74 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE----GVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL--E 74 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS----TEEEEESBTTSSSS-TT-EEEEEEESHGGGS--S
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc----CchheeehHHhCccccccccccccccceeec--c
Confidence 89999999999999987 889999999999999999998654 36699999988 5667899999999999999 5
Q ss_pred HHHHHHHHHHhcccCCcEEEE
Q 024021 191 MRAAWAQKIKDFLKPDGELIT 211 (274)
Q Consensus 191 ~~~~~l~~~~~~L~pgG~~~~ 211 (274)
+...+++++.++|||||++++
T Consensus 75 ~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 75 DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHHHEEEEEEEEE
T ss_pred CHHHHHHHHHHHcCcCeEEeC
Confidence 668899999999999999875
No 37
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.72 E-value=1.8e-16 Score=131.60 Aligned_cols=144 Identities=23% Similarity=0.279 Sum_probs=107.8
Q ss_pred CCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccc
Q 024021 106 ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF 184 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~ 184 (274)
.+.+++|||||||.|+.+..++..|+ .|+|+|.++......+-.....+....+.++...+.+....+.||+|++.+++
T Consensus 113 ~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~~FDtVF~MGVL 192 (315)
T PF08003_consen 113 DLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLGAFDTVFSMGVL 192 (315)
T ss_pred CcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccCCcCEEEEeeeh
Confidence 67789999999999999999999888 79999999877665433222222223344443445554446789999999999
Q ss_pred cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC-------------CCCCCcccCHHHHHHHHhcCCCcEEEEeeccc
Q 024021 185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH-------------VGGPPYKVSVSDYEEVLQPMGFQAISIVDNKL 251 (274)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~ 251 (274)
+|...+ -..+..+++.|+|||.+++.+...... -.+..|..+..-+..+++.+||+.+++.+...
T Consensus 193 YHrr~P--l~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v~~v~~~~ 270 (315)
T PF08003_consen 193 YHRRSP--LDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKDVRCVDVSP 270 (315)
T ss_pred hccCCH--HHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCceEEEecCcc
Confidence 998544 467899999999999999866644322 12334556999999999999999999877553
No 38
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.71 E-value=6e-16 Score=122.92 Aligned_cols=135 Identities=18% Similarity=0.272 Sum_probs=110.2
Q ss_pred CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccc
Q 024021 107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA 186 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~ 186 (274)
.++.+|||+|||+|.++..+++.+.+++++|+++.+++.++++....+. +++++.+|+.+.. .++||+|+++.++++
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~-~~~fD~Vi~n~p~~~ 94 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGV-RGKFDVILFNPPYLP 94 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEccccccc-CCcccEEEECCCCCC
Confidence 4457899999999999999998777999999999999999999876653 5888999987744 358999999988866
Q ss_pred cChh-------------------HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEe
Q 024021 187 IEPE-------------------MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIV 247 (274)
Q Consensus 187 ~~~~-------------------~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 247 (274)
.++. ....+++.+.++|+|||.+++...... ...++.+.++++||....+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~----------~~~~~~~~l~~~gf~~~~~~ 164 (179)
T TIGR00537 95 LEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN----------GEPDTFDKLDERGFRYEIVA 164 (179)
T ss_pred CcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC----------ChHHHHHHHHhCCCeEEEEE
Confidence 5421 145789999999999999988774332 37889999999999999888
Q ss_pred ecccccC
Q 024021 248 DNKLAIG 254 (274)
Q Consensus 248 ~~~~~~~ 254 (274)
....+..
T Consensus 165 ~~~~~~~ 171 (179)
T TIGR00537 165 ERGLFFE 171 (179)
T ss_pred EeecCce
Confidence 7665543
No 39
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.71 E-value=1.1e-16 Score=124.93 Aligned_cols=133 Identities=23% Similarity=0.256 Sum_probs=100.5
Q ss_pred CeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccccCh
Q 024021 110 GRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEP 189 (274)
Q Consensus 110 ~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~ 189 (274)
.++||+|||.|.++..|+..+-+++++|+++.+++.|+++.... ++|++.+.|+.+..|.++||+|+++.+++++++
T Consensus 45 ~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~---~~V~~~~~dvp~~~P~~~FDLIV~SEVlYYL~~ 121 (201)
T PF05401_consen 45 RRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGL---PHVEWIQADVPEFWPEGRFDLIVLSEVLYYLDD 121 (201)
T ss_dssp EEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT----SSEEEEES-TTT---SS-EEEEEEES-GGGSSS
T ss_pred ceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCC---CCeEEEECcCCCCCCCCCeeEEEEehHhHcCCC
Confidence 69999999999999999998889999999999999999999765 579999999999888899999999999999975
Q ss_pred -hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEe
Q 024021 190 -EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIV 247 (274)
Q Consensus 190 -~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 247 (274)
+.+..+++.+...|+|||.+++..+... ...+..+.+..+-+.++|++. +..++..
T Consensus 122 ~~~L~~~l~~l~~~L~pgG~LV~g~~rd~-~c~~wgh~~ga~tv~~~~~~~-~~~~~~~ 178 (201)
T PF05401_consen 122 AEDLRAALDRLVAALAPGGHLVFGHARDA-NCRRWGHAAGAETVLEMLQEH-LTEVERV 178 (201)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEEEEEE-HH-HHHHTT-S--HHHHHHHHHHH-SEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEEecCC-cccccCcccchHHHHHHHHHH-hhheeEE
Confidence 6788999999999999999999876421 111112234678889999885 5554443
No 40
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.71 E-value=1e-16 Score=127.30 Aligned_cols=134 Identities=19% Similarity=0.245 Sum_probs=107.0
Q ss_pred CCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccc
Q 024021 109 KGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA 186 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~ 186 (274)
+.+|||+|||+|..+..++. ++.+|+++|.++.+++.|+++....+.. +++++.+|+.+....++||+|+++..
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~-~i~~~~~d~~~~~~~~~fDlV~~~~~--- 121 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLK-NVTVVHGRAEEFGQEEKFDVVTSRAV--- 121 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCC-CEEEEeccHhhCCCCCCccEEEEccc---
Confidence 68999999999999988875 6789999999999999999999888764 49999999988544668999998753
Q ss_pred cChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecccccCCccchhHH
Q 024021 187 IEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIGPRKGREKL 262 (274)
Q Consensus 187 ~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~~ 262 (274)
.....+++.+.++|+|||.+++..... ...++.++.+..|+.+..+.....+ +.++..++
T Consensus 122 ---~~~~~~l~~~~~~LkpGG~lv~~~~~~-----------~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 181 (187)
T PRK00107 122 ---ASLSDLVELCLPLLKPGGRFLALKGRD-----------PEEEIAELPKALGGKVEEVIELTLP--GLDGERHL 181 (187)
T ss_pred ---cCHHHHHHHHHHhcCCCeEEEEEeCCC-----------hHHHHHHHHHhcCceEeeeEEEecC--CCCCcEEE
Confidence 123578899999999999999886332 5678888888889998777664443 33344443
No 41
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.71 E-value=1.3e-16 Score=123.31 Aligned_cols=105 Identities=26% Similarity=0.375 Sum_probs=90.5
Q ss_pred CCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC--CCCeeEEEecc
Q 024021 108 PKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--TELFDLIFDYT 182 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~D~v~~~~ 182 (274)
.+.+|||+|||+|..+..+++ ++.+++|+|+++++++.|+++....+.. +++|+++|+.+... .++||+|++..
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~l~~~~~~~~D~I~~~~ 81 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIEDLPQELEEKFDIIISNG 81 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTCGCGCSSTTEEEEEEES
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhccccccCCCeeEEEEcC
Confidence 457999999999999999983 5779999999999999999998877765 89999999999432 27899999999
Q ss_pred cccccChhHHHHHHHHHHhcccCCcEEEEEEcc
Q 024021 183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP 215 (274)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 215 (274)
+++++++ ...+++.+.++|++||.+++..+.
T Consensus 82 ~l~~~~~--~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 82 VLHHFPD--PEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp TGGGTSH--HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred chhhccC--HHHHHHHHHHHcCCCcEEEEEECC
Confidence 9988853 457899999999999999988765
No 42
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.71 E-value=2.3e-17 Score=133.17 Aligned_cols=136 Identities=19% Similarity=0.222 Sum_probs=107.9
Q ss_pred CCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCc-----ceEEEEcccCCCCCCCCeeEEEeccc
Q 024021 109 KGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAK-----FVSFLKADFFTWCPTELFDLIFDYTF 183 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-----~~~~~~~d~~~~~~~~~~D~v~~~~~ 183 (274)
+++|||+|||+|.++..|++.|++|+|+|+++.+++.|+++........ ++++...|+.... +.||.|+|+.+
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~--~~fDaVvcsev 167 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT--GKFDAVVCSEV 167 (282)
T ss_pred CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc--cccceeeeHHH
Confidence 4789999999999999999999999999999999999999854443222 3667777766544 44999999999
Q ss_pred ccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC----------------CCC---CCcccCHHHHHHHHhcCCCcEE
Q 024021 184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH----------------VGG---PPYKVSVSDYEEVLQPMGFQAI 244 (274)
Q Consensus 184 ~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~----------------~~~---~~~~~~~~~~~~~l~~~Gf~~~ 244 (274)
++|+ .+.+.+++.+.+.|+|||.+++.+....-. +.| ..-+.+++++..+++..++++.
T Consensus 168 leHV--~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~~~v~ 245 (282)
T KOG1270|consen 168 LEHV--KDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNANGAQVN 245 (282)
T ss_pred HHHH--hCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcCcchh
Confidence 9998 455789999999999999999987654321 111 1223689999999999999887
Q ss_pred EEee
Q 024021 245 SIVD 248 (274)
Q Consensus 245 ~~~~ 248 (274)
.+.-
T Consensus 246 ~v~G 249 (282)
T KOG1270|consen 246 DVVG 249 (282)
T ss_pred hhhc
Confidence 7654
No 43
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.71 E-value=2e-16 Score=124.00 Aligned_cols=157 Identities=22% Similarity=0.314 Sum_probs=124.1
Q ss_pred CCCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccc
Q 024021 106 ALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTF 183 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~ 183 (274)
..+..+|.|+|||+|..+..|++ +++.++|+|-|++|++.|+++. ++++|..+|+..+.+....|+++++.+
T Consensus 28 ~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl------p~~~f~~aDl~~w~p~~~~dllfaNAv 101 (257)
T COG4106 28 LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL------PDATFEEADLRTWKPEQPTDLLFANAV 101 (257)
T ss_pred ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC------CCCceecccHhhcCCCCccchhhhhhh
Confidence 34458999999999999999988 7899999999999999999887 679999999999988899999999999
Q ss_pred ccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCC------------------CC----CCcccCHHHHHHHHhcCCC
Q 024021 184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHV------------------GG----PPYKVSVSDYEEVLQPMGF 241 (274)
Q Consensus 184 ~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~------------------~~----~~~~~~~~~~~~~l~~~Gf 241 (274)
++++++. ..++.++...|.|||.+-+-.....+.. .+ ..-..++..+-++|...+-
T Consensus 102 lqWlpdH--~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~Yy~lLa~~~~ 179 (257)
T COG4106 102 LQWLPDH--PELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAAYYELLAPLAC 179 (257)
T ss_pred hhhcccc--HHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHHHHHHHhCcccc
Confidence 9999754 5789999999999999988664433220 01 1112478888888888866
Q ss_pred cEEEEeecccccCCccchhHHHHhhhhhccc
Q 024021 242 QAISIVDNKLAIGPRKGREKLGRWKRSVRHS 272 (274)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (274)
++---++ ..++..++.+.|.-|.+.....
T Consensus 180 rvDiW~T--~Y~h~l~~a~aIvdWvkgTgLr 208 (257)
T COG4106 180 RVDIWHT--TYYHQLPGADAIVDWVKGTGLR 208 (257)
T ss_pred eeeeeee--eccccCCCccchhhheeccccc
Confidence 5543333 4566667788888887766543
No 44
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.70 E-value=8.4e-16 Score=135.41 Aligned_cols=152 Identities=23% Similarity=0.231 Sum_probs=118.2
Q ss_pred CCCCeEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccc
Q 024021 107 LPKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC 185 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~ 185 (274)
.++.+|||+|||+|.++..+++ .+.+|+|+|+|+++++.|+++.... .+++...|.... .++||.|++..+++
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l----~v~~~~~D~~~l--~~~fD~Ivs~~~~e 239 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGL----PVEIRLQDYRDL--NGQFDRIVSVGMFE 239 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccC----eEEEEECchhhc--CCCCCEEEEeCchh
Confidence 4567999999999999998887 5789999999999999999987432 478888887654 46899999999999
Q ss_pred ccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCC--C---------CcccCHHHHHHHHhcCCCcEEEEeecccccC
Q 024021 186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGG--P---------PYKVSVSDYEEVLQPMGFQAISIVDNKLAIG 254 (274)
Q Consensus 186 ~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~--~---------~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~ 254 (274)
+++......+++++.++|+|||++++..+........ . ....+.+++.+.++ .||.+.++......+
T Consensus 240 hvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~~~~i~~yifp~g~lps~~~i~~~~~-~~~~v~d~~~~~~hy- 317 (383)
T PRK11705 240 HVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNVDPWINKYIFPNGCLPSVRQIAQASE-GLFVMEDWHNFGADY- 317 (383)
T ss_pred hCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCCCCCceeeecCCCcCCCHHHHHHHHH-CCcEEEEEecChhhH-
Confidence 9977777889999999999999999977654322110 0 11236788888766 489988877654444
Q ss_pred CccchhHHHHhhhhhc
Q 024021 255 PRKGREKLGRWKRSVR 270 (274)
Q Consensus 255 ~~~~~~~~~~~~~~~~ 270 (274)
.+++..|.+.+.
T Consensus 318 ----~~TL~~W~~~f~ 329 (383)
T PRK11705 318 ----DRTLMAWHENFE 329 (383)
T ss_pred ----HHHHHHHHHHHH
Confidence 478888877653
No 45
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.70 E-value=1.1e-15 Score=128.44 Aligned_cols=159 Identities=19% Similarity=0.300 Sum_probs=114.6
Q ss_pred HHHhcCC-CCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCee
Q 024021 100 HLHQSGA-LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFD 176 (274)
Q Consensus 100 ~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D 176 (274)
.++.... .++.+|||+|||+|.++..+++ ++.+|+|+|+++.+++.|+++. .++.++.+|+....+.++||
T Consensus 22 ~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~~~~~~~~fD 95 (258)
T PRK01683 22 DLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL------PDCQFVEADIASWQPPQALD 95 (258)
T ss_pred HHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC------CCCeEEECchhccCCCCCcc
Confidence 3444333 3457999999999999998887 4679999999999999999875 35889999998766667999
Q ss_pred EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC--------------------CCC--CCcccCHHHHHH
Q 024021 177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH--------------------VGG--PPYKVSVSDYEE 234 (274)
Q Consensus 177 ~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~--------------------~~~--~~~~~~~~~~~~ 234 (274)
+|+++.+++++++ ...+++++.++|+|||.+++........ ..+ .....+..++.+
T Consensus 96 ~v~~~~~l~~~~d--~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 173 (258)
T PRK01683 96 LIFANASLQWLPD--HLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQNLPDRGARRAPLPPPHAYYD 173 (258)
T ss_pred EEEEccChhhCCC--HHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHHHhccccccCcCCCCHHHHHH
Confidence 9999999998864 3578999999999999998864321110 001 122346778999
Q ss_pred HHhcCCCcEEEEeecccccCCccchhHHHHhhhh
Q 024021 235 VLQPMGFQAISIVDNKLAIGPRKGREKLGRWKRS 268 (274)
Q Consensus 235 ~l~~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (274)
++..+|+.+ .+...... .+....+.+..|.+.
T Consensus 174 ~l~~~g~~v-~~~~~~~~-~~~~~~~~~~~~~~~ 205 (258)
T PRK01683 174 ALAPAACRV-DIWHTTYY-HPMPSAQAIVEWVKG 205 (258)
T ss_pred HHHhCCCce-eeeeeeee-eecCCchhhhhhhhh
Confidence 999999875 44333332 222334555556553
No 46
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.70 E-value=1.4e-15 Score=127.38 Aligned_cols=128 Identities=16% Similarity=0.153 Sum_probs=102.7
Q ss_pred CCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEecccccc
Q 024021 108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFFCA 186 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~~~~~~ 186 (274)
+..+|||+|||+|.++..++..+.+++++|+++.+++.++++.. ...++.+|+.. +.+.++||+|+++.++++
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~ 115 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDA------ADHYLAGDIESLPLATATFDLAWSNLAVQW 115 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCC------CCCEEEcCcccCcCCCCcEEEEEECchhhh
Confidence 45799999999999999998888999999999999999998753 25678899877 445668999999999987
Q ss_pred cChhHHHHHHHHHHhcccCCcEEEEEEccCCCC------------CCCCCcccCHHHHHHHHhcCCCcE
Q 024021 187 IEPEMRAAWAQKIKDFLKPDGELITLMFPISDH------------VGGPPYKVSVSDYEEVLQPMGFQA 243 (274)
Q Consensus 187 ~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~l~~~Gf~~ 243 (274)
.++ ...++.++.++|+|||.+++..+..... ........+.+++.++++..|+..
T Consensus 116 ~~d--~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 182 (251)
T PRK10258 116 CGN--LSTALRELYRVVRPGGVVAFTTLVQGSLPELHQAWQAVDERPHANRFLPPDAIEQALNGWRYQH 182 (251)
T ss_pred cCC--HHHHHHHHHHHcCCCeEEEEEeCCCCchHHHHHHHHHhccCCccccCCCHHHHHHHHHhCCcee
Confidence 753 4678999999999999999987665321 111122358899999999888764
No 47
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.69 E-value=9e-16 Score=130.01 Aligned_cols=140 Identities=19% Similarity=0.235 Sum_probs=109.4
Q ss_pred CCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEecc
Q 024021 107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYT 182 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~~ 182 (274)
.++.+|||+|||+|..+..+++ ...+|+++|+++.+++.|+++....+. ++++++.+|+.+ ..+.+.||+|+++.
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~-~~v~~~~~d~~~l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY-TNVEFRLGEIEALPVADNSVDVIISNC 154 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC-CCEEEEEcchhhCCCCCCceeEEEEcC
Confidence 4568999999999998876655 335899999999999999998876654 478999999987 34456899999999
Q ss_pred cccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCC------------CCCcccCHHHHHHHHhcCCCcEEEEeec
Q 024021 183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVG------------GPPYKVSVSDYEEVLQPMGFQAISIVDN 249 (274)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 249 (274)
++++.++ ...+++++.++|+|||++++..+....... ......+.+++.++++++||..+.+...
T Consensus 155 v~~~~~d--~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v~i~~~ 231 (272)
T PRK11873 155 VINLSPD--KERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDITIQPK 231 (272)
T ss_pred cccCCCC--HHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCceEEEec
Confidence 9987753 357899999999999999997654332110 0011246789999999999999887553
No 48
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.69 E-value=6.3e-16 Score=133.05 Aligned_cols=137 Identities=15% Similarity=0.090 Sum_probs=107.5
Q ss_pred CCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEecccc
Q 024021 108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFF 184 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~~~~ 184 (274)
++.+|||+|||+|..+..+++ .+.+++++|+++++++.|+++... .+++++.+|+.+ ..+.+.||+|+++.++
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~----~~i~~i~gD~e~lp~~~~sFDvVIs~~~L 188 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIIEGDAEDLPFPTDYADRYVSAGSI 188 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc----cCCeEEeccHHhCCCCCCceeEEEEcChh
Confidence 457999999999999888876 457999999999999999987642 358899999987 3456789999999999
Q ss_pred cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCC-----CC-CCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024021 185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHV-----GG-PPYKVSVSDYEEVLQPMGFQAISIVDNK 250 (274)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 250 (274)
+++++. ..+++++.++|+|||.+++......... .. .....+.+++.++++++||+.+++....
T Consensus 189 ~~~~d~--~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~i~ 258 (340)
T PLN02490 189 EYWPDP--QRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKRIG 258 (340)
T ss_pred hhCCCH--HHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEEcC
Confidence 988654 4689999999999999987653221110 00 0112478999999999999999887643
No 49
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.68 E-value=7.2e-16 Score=122.25 Aligned_cols=128 Identities=17% Similarity=0.217 Sum_probs=99.5
Q ss_pred CCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccc
Q 024021 107 LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF 184 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~ 184 (274)
.++.+|||+|||+|..+..++. ++.+|+++|.++.+++.++++....+. ++++++.+|+.+....++||+|++.. +
T Consensus 41 ~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~-~~i~~i~~d~~~~~~~~~fD~I~s~~-~ 118 (181)
T TIGR00138 41 LDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGL-NNVEIVNGRAEDFQHEEQFDVITSRA-L 118 (181)
T ss_pred cCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCC-CCeEEEecchhhccccCCccEEEehh-h
Confidence 4478999999999999988765 456899999999999999998877765 46999999998865567899999876 3
Q ss_pred cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhc---CCCcEEEEeecccc
Q 024021 185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQP---MGFQAISIVDNKLA 252 (274)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~Gf~~~~~~~~~~~ 252 (274)
++ ...+++.+.++|+|||.+++.... . ...++..+.+. .||+.++......+
T Consensus 119 ~~-----~~~~~~~~~~~LkpgG~lvi~~~~--------~---~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 173 (181)
T TIGR00138 119 AS-----LNVLLELTLNLLKVGGYFLAYKGK--------K---YLDEIEEAKRKCQVLGVEPLEVPPLTGP 173 (181)
T ss_pred hC-----HHHHHHHHHHhcCCCCEEEEEcCC--------C---cHHHHHHHHHhhhhcCceEeeccccCCC
Confidence 32 245778889999999999987521 1 34444444444 79999888776655
No 50
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.66 E-value=3e-16 Score=112.79 Aligned_cols=94 Identities=30% Similarity=0.357 Sum_probs=79.1
Q ss_pred EEEEcCCcchhHHHhhCC---C--CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEec-ccc
Q 024021 112 ALVPGCGTGYDVVAMASP---E--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDY-TFF 184 (274)
Q Consensus 112 vLDiG~G~G~~~~~l~~~---~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~-~~~ 184 (274)
|||+|||+|..+..+++. + .+++++|+++++++.++++....+. +++++++|+.+ ....++||+|++. .++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~~~~~~~D~v~~~~~~~ 78 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLPFSDGKFDLVVCSGLSL 78 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHHHHSSSEEEEEE-TTGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCcccCCCeeEEEEcCCcc
Confidence 799999999999988863 3 7999999999999999999876553 69999999988 3345699999995 459
Q ss_pred cccChhHHHHHHHHHHhcccCCc
Q 024021 185 CAIEPEMRAAWAQKIKDFLKPDG 207 (274)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~L~pgG 207 (274)
+|++++....+++++.++|+|||
T Consensus 79 ~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 79 HHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999998
No 51
>PRK14968 putative methyltransferase; Provisional
Probab=99.65 E-value=7.4e-15 Score=117.43 Aligned_cols=135 Identities=23% Similarity=0.358 Sum_probs=107.1
Q ss_pred CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcc-eEEEEcccCCCCCCCCeeEEEeccccc
Q 024021 107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKF-VSFLKADFFTWCPTELFDLIFDYTFFC 185 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~D~v~~~~~~~ 185 (274)
.++.+|||+|||+|..+..+++.+.+++++|+++++++.++++....+..++ +.++.+|+.+..+.++||+|+++..+.
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p~~ 101 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPPYL 101 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCCcC
Confidence 4567999999999999999988888999999999999999999877665433 889999988865566899999887654
Q ss_pred ccC-------------------hhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEE
Q 024021 186 AIE-------------------PEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISI 246 (274)
Q Consensus 186 ~~~-------------------~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 246 (274)
... ......+++++.++|+|||.+++..... ...+++.++++++||++..+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~----------~~~~~l~~~~~~~g~~~~~~ 171 (188)
T PRK14968 102 PTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL----------TGEDEVLEYLEKLGFEAEVV 171 (188)
T ss_pred CCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc----------CCHHHHHHHHHHCCCeeeee
Confidence 311 1234678999999999999988876322 24678999999999998776
Q ss_pred eeccc
Q 024021 247 VDNKL 251 (274)
Q Consensus 247 ~~~~~ 251 (274)
.....
T Consensus 172 ~~~~~ 176 (188)
T PRK14968 172 AEEKF 176 (188)
T ss_pred eeccc
Confidence 65433
No 52
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.65 E-value=5.4e-15 Score=119.47 Aligned_cols=101 Identities=17% Similarity=0.302 Sum_probs=86.0
Q ss_pred CCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccc
Q 024021 107 LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF 184 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~ 184 (274)
.++.+|||+|||+|..+..+++ ++.+++|+|+|+++++.|+++. .++.+..+|+.++.+.++||+|+++.++
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~------~~~~~~~~d~~~~~~~~sfD~V~~~~vL 115 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL------PNINIIQGSLFDPFKDNFFDLVLTKGVL 115 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC------CCCcEEEeeccCCCCCCCEEEEEECChh
Confidence 3457999999999999999877 3679999999999999999875 2467888998886667899999999999
Q ss_pred cccChhHHHHHHHHHHhcccCCcEEEEEEcc
Q 024021 185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFP 215 (274)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 215 (274)
+|++++....+++++.+++ ++.+++.++.
T Consensus 116 ~hl~p~~~~~~l~el~r~~--~~~v~i~e~~ 144 (204)
T TIGR03587 116 IHINPDNLPTAYRELYRCS--NRYILIAEYY 144 (204)
T ss_pred hhCCHHHHHHHHHHHHhhc--CcEEEEEEee
Confidence 9998888889999999987 4677776653
No 53
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.65 E-value=4.6e-15 Score=118.70 Aligned_cols=126 Identities=17% Similarity=0.113 Sum_probs=99.9
Q ss_pred CCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccc
Q 024021 107 LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF 184 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~ 184 (274)
.++.+|||+|||+|..+..+++ ++.+++++|+++.+++.++++....+. .+++++.+|..... .++||+|++....
T Consensus 30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~-~~i~~~~~d~~~~~-~~~~D~v~~~~~~ 107 (187)
T PRK08287 30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGC-GNIDIIPGEAPIEL-PGKADAIFIGGSG 107 (187)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC-CCeEEEecCchhhc-CcCCCEEEECCCc
Confidence 3567999999999999998876 456999999999999999998876654 46899999875433 3579999987665
Q ss_pred cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeec
Q 024021 185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDN 249 (274)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 249 (274)
.++ ..+++.+.+.|+|||++++..... .+..++.++++++||..+.+...
T Consensus 108 ~~~-----~~~l~~~~~~Lk~gG~lv~~~~~~----------~~~~~~~~~l~~~g~~~~~~~~~ 157 (187)
T PRK08287 108 GNL-----TAIIDWSLAHLHPGGRLVLTFILL----------ENLHSALAHLEKCGVSELDCVQL 157 (187)
T ss_pred cCH-----HHHHHHHHHhcCCCeEEEEEEecH----------hhHHHHHHHHHHCCCCcceEEEE
Confidence 433 467889999999999998865322 15678899999999987776443
No 54
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.64 E-value=3e-15 Score=124.23 Aligned_cols=141 Identities=22% Similarity=0.278 Sum_probs=111.2
Q ss_pred CCCeEEEEcCCcchhHHHhhCC---CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCCeeEEEeccc
Q 024021 108 PKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTF 183 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~ 183 (274)
++.+|||+|||+|..+..++.. ..+++++|+++.+++.++++....+...++++..+|+.+. .+.+.||+|++..+
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~ 130 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFG 130 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecc
Confidence 4579999999999999988773 3799999999999999999987654446799999999873 34568999999999
Q ss_pred ccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCC---------------------CC-C----------CcccCHHH
Q 024021 184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHV---------------------GG-P----------PYKVSVSD 231 (274)
Q Consensus 184 ~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~---------------------~~-~----------~~~~~~~~ 231 (274)
++++++ ...+++.+.++|+|||.+++.++...... .+ . ...++.++
T Consensus 131 l~~~~~--~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (239)
T PRK00216 131 LRNVPD--IDKALREMYRVLKPGGRLVILEFSKPTNPPLKKAYDFYLFKVLPLIGKLISKNAEAYSYLAESIRAFPDQEE 208 (239)
T ss_pred cccCCC--HHHHHHHHHHhccCCcEEEEEEecCCCchHHHHHHHHHHHhhhHHHHHHHcCCcHHHHHHHHHHHhCCCHHH
Confidence 888753 46789999999999999988765443211 00 0 11236788
Q ss_pred HHHHHhcCCCcEEEEeecc
Q 024021 232 YEEVLQPMGFQAISIVDNK 250 (274)
Q Consensus 232 ~~~~l~~~Gf~~~~~~~~~ 250 (274)
+.++++++||+.+.+....
T Consensus 209 ~~~~l~~aGf~~~~~~~~~ 227 (239)
T PRK00216 209 LAAMLEEAGFERVRYRNLT 227 (239)
T ss_pred HHHHHHhCCCceeeeeeee
Confidence 9999999999998887643
No 55
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.64 E-value=6.4e-15 Score=120.19 Aligned_cols=135 Identities=24% Similarity=0.274 Sum_probs=113.2
Q ss_pred CCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC---CCCCCeeEEEeccc
Q 024021 109 KGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---CPTELFDLIFDYTF 183 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~D~v~~~~~ 183 (274)
..+|||+|||+|..++.++.+ .+++++||+.+++.+.|++++..+++..+++++++|+.+. ....+||+|+|+..
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPP 124 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNPP 124 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCCC
Confidence 689999999999999999884 4799999999999999999999999999999999999873 23346999999998
Q ss_pred ccccChh----------------HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEe
Q 024021 184 FCAIEPE----------------MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIV 247 (274)
Q Consensus 184 ~~~~~~~----------------~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 247 (274)
+...... ....+++...++|||||.+.++.... ...++.++++..+|....+.
T Consensus 125 yf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~e-----------rl~ei~~~l~~~~~~~k~i~ 193 (248)
T COG4123 125 YFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPE-----------RLAEIIELLKSYNLEPKRIQ 193 (248)
T ss_pred CCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHH-----------HHHHHHHHHHhcCCCceEEE
Confidence 8664322 13689999999999999999987333 56788999999999998887
Q ss_pred ecccccC
Q 024021 248 DNKLAIG 254 (274)
Q Consensus 248 ~~~~~~~ 254 (274)
.+.....
T Consensus 194 ~V~p~~~ 200 (248)
T COG4123 194 FVYPKIG 200 (248)
T ss_pred EecCCCC
Confidence 7554443
No 56
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.64 E-value=4.8e-15 Score=135.13 Aligned_cols=137 Identities=20% Similarity=0.184 Sum_probs=109.9
Q ss_pred CCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---CCCCCCeeEEEecccc
Q 024021 108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPTELFDLIFDYTFF 184 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~D~v~~~~~~ 184 (274)
++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.++..... .++++++.+|+.. ..+.++||+|++..++
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~~~~---~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l 113 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESINGH---YKNVKFMCADVTSPDLNISDGSVDLIFSNWLL 113 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHhcc---CCceEEEEecccccccCCCCCCEEEEehhhhH
Confidence 457999999999999999998888999999999999988664322 2578999999864 3456789999999999
Q ss_pred cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC-----CCCCCcccCHHHHHHHHhcCCCcEEEEe
Q 024021 185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH-----VGGPPYKVSVSDYEEVLQPMGFQAISIV 247 (274)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 247 (274)
++++++....++.++.++|+|||++++.+...... ...+........+.+++.++||......
T Consensus 114 ~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 181 (475)
T PLN02336 114 MYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNNPTHYREPRFYTKVFKECHTRDEDGN 181 (475)
T ss_pred HhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccCCCCeecChHHHHHHHHHheeccCCCC
Confidence 99988778899999999999999999876543221 1133444468899999999998876543
No 57
>PRK14967 putative methyltransferase; Provisional
Probab=99.63 E-value=2.1e-14 Score=118.01 Aligned_cols=147 Identities=20% Similarity=0.233 Sum_probs=110.8
Q ss_pred HHHHHHhcC-CCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCC
Q 024021 97 IIVHLHQSG-ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTEL 174 (274)
Q Consensus 97 ~~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 174 (274)
.+...+... ..++.+|||+|||+|.++..+++.+. +++++|+++.+++.++++....+. +++++.+|+.+..+.++
T Consensus 24 ~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~~~~~~ 101 (223)
T PRK14967 24 LLADALAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARAVEFRP 101 (223)
T ss_pred HHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhhccCCC
Confidence 344444433 23457999999999999998888665 999999999999999998876653 58889999887656678
Q ss_pred eeEEEecccccccCh-------------------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHH
Q 024021 175 FDLIFDYTFFCAIEP-------------------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEV 235 (274)
Q Consensus 175 ~D~v~~~~~~~~~~~-------------------~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (274)
||+|+++..+..-+. .....+++++.++|+|||++++...... ...++.+.
T Consensus 102 fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~----------~~~~~~~~ 171 (223)
T PRK14967 102 FDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELS----------GVERTLTR 171 (223)
T ss_pred eeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEeccc----------CHHHHHHH
Confidence 999999865432211 1245678899999999999988653221 45688899
Q ss_pred HhcCCCcEEEEeecccccCC
Q 024021 236 LQPMGFQAISIVDNKLAIGP 255 (274)
Q Consensus 236 l~~~Gf~~~~~~~~~~~~~~ 255 (274)
++..||..........++.+
T Consensus 172 l~~~g~~~~~~~~~~~~~~~ 191 (223)
T PRK14967 172 LSEAGLDAEVVASQWIPFGP 191 (223)
T ss_pred HHHCCCCeEEEEeeccCccH
Confidence 99999988777776666543
No 58
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=4.2e-15 Score=124.34 Aligned_cols=137 Identities=22% Similarity=0.244 Sum_probs=105.7
Q ss_pred HHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCee
Q 024021 98 IVHLHQSGALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFD 176 (274)
Q Consensus 98 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D 176 (274)
..++++....++.+|||+|||+|.+++..++.|+ +++|+|++|.+++.|+.|+..++....++....+.......++||
T Consensus 152 cL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~D 231 (300)
T COG2264 152 CLEALEKLLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFD 231 (300)
T ss_pred HHHHHHHhhcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCccc
Confidence 4455566667889999999999999999999888 699999999999999999998876532333333333333346899
Q ss_pred EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeec
Q 024021 177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDN 249 (274)
Q Consensus 177 ~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 249 (274)
+|+++-.-+ ....+...+.+.++|||++++.-.-.. ..+.+.+.++.+||.++.+...
T Consensus 232 vIVANILA~-----vl~~La~~~~~~lkpgg~lIlSGIl~~----------q~~~V~~a~~~~gf~v~~~~~~ 289 (300)
T COG2264 232 VIVANILAE-----VLVELAPDIKRLLKPGGRLILSGILED----------QAESVAEAYEQAGFEVVEVLER 289 (300)
T ss_pred EEEehhhHH-----HHHHHHHHHHHHcCCCceEEEEeehHh----------HHHHHHHHHHhCCCeEeEEEec
Confidence 999876432 335788999999999999998653221 4678888998999999887654
No 59
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.63 E-value=7.1e-15 Score=122.82 Aligned_cols=121 Identities=23% Similarity=0.281 Sum_probs=95.8
Q ss_pred CCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccc
Q 024021 106 ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF 184 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~ 184 (274)
..++.+|||+|||+|.++..+++.|. +|+++|+++.+++.|+++...++...++.+..+|. +||+|+++...
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~-------~fD~Vvani~~ 189 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL-------KADVIVANILA 189 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC-------CcCEEEEcCcH
Confidence 45678999999999999998888766 59999999999999999988776544454444332 69999986542
Q ss_pred cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024021 185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD 248 (274)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 248 (274)
+....++..+.++|+|||.+++...... ..+++.+.++..||.++....
T Consensus 190 -----~~~~~l~~~~~~~LkpgG~lilsgi~~~----------~~~~v~~~l~~~Gf~~~~~~~ 238 (250)
T PRK00517 190 -----NPLLELAPDLARLLKPGGRLILSGILEE----------QADEVLEAYEEAGFTLDEVLE 238 (250)
T ss_pred -----HHHHHHHHHHHHhcCCCcEEEEEECcHh----------hHHHHHHHHHHCCCEEEEEEE
Confidence 2345778999999999999999764321 567899999999999987655
No 60
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.63 E-value=9.2e-15 Score=121.26 Aligned_cols=136 Identities=22% Similarity=0.262 Sum_probs=106.5
Q ss_pred CCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEecccc
Q 024021 108 PKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFF 184 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~~~~ 184 (274)
.+.+|||+|||+|.++..+++. ..+++++|+++.++..++++.. +++.++.+|+.+ +.+.++||+|++..++
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~~~~~fD~vi~~~~l 108 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-----ENVQFICGDAEKLPLEDSSFDLIVSNLAL 108 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-----CCCeEEecchhhCCCCCCceeEEEEhhhh
Confidence 3479999999999999988874 4578999999999999988764 358899999987 3456789999999999
Q ss_pred cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCC--------CCCCcccCHHHHHHHHhcCCCcEEEEeecccc
Q 024021 185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHV--------GGPPYKVSVSDYEEVLQPMGFQAISIVDNKLA 252 (274)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~ 252 (274)
+++++ ...++..+.++|+|||.+++..+...... .+. ...+.+++.++++.+ |..+.+......
T Consensus 109 ~~~~~--~~~~l~~~~~~L~~~G~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~-f~~~~~~~~~~~ 180 (240)
T TIGR02072 109 QWCDD--LSQALSELARVLKPGGLLAFSTFGPGTLHELRQSFGQHGL-RYLSLDELKALLKNS-FELLTLEEELIT 180 (240)
T ss_pred hhccC--HHHHHHHHHHHcCCCcEEEEEeCCccCHHHHHHHHHHhcc-CCCCHHHHHHHHHHh-cCCcEEEEEEEE
Confidence 98853 46789999999999999999876543210 111 224778899999998 887776554443
No 61
>PRK08317 hypothetical protein; Provisional
Probab=99.63 E-value=2.6e-14 Score=118.51 Aligned_cols=146 Identities=24% Similarity=0.292 Sum_probs=110.5
Q ss_pred CCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEecc
Q 024021 107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYT 182 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~~ 182 (274)
.++.+|||+|||+|.++..+++ ++.+++++|+++.+++.++++.... ..++++..+|+.. ..+.++||+|++..
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~--~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 95 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL--GPNVEFVRGDADGLPFPDGSFDAVRSDR 95 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC--CCceEEEecccccCCCCCCCceEEEEec
Confidence 4457999999999999998876 3469999999999999999883322 2578999999876 44557899999999
Q ss_pred cccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCC----C-------------CCCcccCHHHHHHHHhcCCCcEEE
Q 024021 183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHV----G-------------GPPYKVSVSDYEEVLQPMGFQAIS 245 (274)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~----~-------------~~~~~~~~~~~~~~l~~~Gf~~~~ 245 (274)
+++++.+ ...+++++.++|+|||.+++......... . .........++.++++++||..+.
T Consensus 96 ~~~~~~~--~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~ 173 (241)
T PRK08317 96 VLQHLED--PARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSDHFADPWLGRRLPGLFREAGLTDIE 173 (241)
T ss_pred hhhccCC--HHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHcCCCcee
Confidence 9998854 46789999999999999998774321100 0 000112456899999999999988
Q ss_pred EeecccccCCc
Q 024021 246 IVDNKLAIGPR 256 (274)
Q Consensus 246 ~~~~~~~~~~~ 256 (274)
+..........
T Consensus 174 ~~~~~~~~~~~ 184 (241)
T PRK08317 174 VEPYTLIETDL 184 (241)
T ss_pred EEEEEEeccCc
Confidence 87766554443
No 62
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.62 E-value=2.3e-14 Score=119.89 Aligned_cols=140 Identities=24% Similarity=0.295 Sum_probs=107.4
Q ss_pred HHHHHHhcCCCCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCC
Q 024021 97 IIVHLHQSGALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTEL 174 (274)
Q Consensus 97 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 174 (274)
.+..++......+.+|||+|||+|..+..++. ++.+++++|+++.+++.++++....+.. +++++.+|+.+..+.++
T Consensus 76 l~~~~l~~~~~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~ 154 (251)
T TIGR03534 76 LVEAALERLKKGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWFEPLPGGK 154 (251)
T ss_pred HHHHHHHhcccCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhccCcCCc
Confidence 33444444333456999999999999999987 4679999999999999999998776653 69999999988666678
Q ss_pred eeEEEeccccccc------Chh------------------HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHH
Q 024021 175 FDLIFDYTFFCAI------EPE------------------MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVS 230 (274)
Q Consensus 175 ~D~v~~~~~~~~~------~~~------------------~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~ 230 (274)
||+|+++.++... ... ....+++.+.++|+|||.+++.... ...+
T Consensus 155 fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~-----------~~~~ 223 (251)
T TIGR03534 155 FDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGY-----------DQGE 223 (251)
T ss_pred eeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECc-----------cHHH
Confidence 9999998765431 111 1246789999999999998886411 1467
Q ss_pred HHHHHHhcCCCcEEEEee
Q 024021 231 DYEEVLQPMGFQAISIVD 248 (274)
Q Consensus 231 ~~~~~l~~~Gf~~~~~~~ 248 (274)
++.++++++||..+.+..
T Consensus 224 ~~~~~l~~~gf~~v~~~~ 241 (251)
T TIGR03534 224 AVRALFEAAGFADVETRK 241 (251)
T ss_pred HHHHHHHhCCCCceEEEe
Confidence 899999999998877644
No 63
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.62 E-value=7.9e-15 Score=115.41 Aligned_cols=106 Identities=26% Similarity=0.407 Sum_probs=88.9
Q ss_pred CCCeEEEEcCCcchhHHHhhCCCC--eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccc
Q 024021 108 PKGRALVPGCGTGYDVVAMASPER--YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC 185 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~ 185 (274)
+..+|||+|||+|..+..+++.+. +|+++|+++.+++.++++...++..+ ++++..|+.+..+.++||+|+++.+++
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~~~~~~fD~Iv~NPP~~ 109 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEALPDGKFDLIVSNPPFH 109 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTTCCTTCEEEEEE---SB
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccc-cccccccccccccccceeEEEEccchh
Confidence 568999999999999999988443 69999999999999999999988765 999999999877778999999998876
Q ss_pred ccCh---hHHHHHHHHHHhcccCCcEEEEEEc
Q 024021 186 AIEP---EMRAAWAQKIKDFLKPDGELITLMF 214 (274)
Q Consensus 186 ~~~~---~~~~~~l~~~~~~L~pgG~~~~~~~ 214 (274)
.-.. .....+++...++|+|||.++++..
T Consensus 110 ~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 110 AGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp TTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 5443 3467889999999999999977653
No 64
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.62 E-value=1.4e-14 Score=123.49 Aligned_cols=132 Identities=16% Similarity=0.149 Sum_probs=102.6
Q ss_pred HHHhcCCCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEE
Q 024021 100 HLHQSGALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLI 178 (274)
Q Consensus 100 ~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v 178 (274)
.++.....++.+|||+|||+|.++..+++.|. +|+++|+++.+++.|+++...++...++.+...+... ...++||+|
T Consensus 151 ~~l~~~~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~-~~~~~fDlV 229 (288)
T TIGR00406 151 EWLEDLDLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ-PIEGKADVI 229 (288)
T ss_pred HHHHhhcCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc-ccCCCceEE
Confidence 33444455678999999999999988887665 8999999999999999999888776667777776433 235689999
Q ss_pred EecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024021 179 FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD 248 (274)
Q Consensus 179 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 248 (274)
+++.... ....++..+.++|+|||.+++...... ..+++.+.++.. |.++.+..
T Consensus 230 van~~~~-----~l~~ll~~~~~~LkpgG~li~sgi~~~----------~~~~v~~~~~~~-f~~~~~~~ 283 (288)
T TIGR00406 230 VANILAE-----VIKELYPQFSRLVKPGGWLILSGILET----------QAQSVCDAYEQG-FTVVEIRQ 283 (288)
T ss_pred EEecCHH-----HHHHHHHHHHHHcCCCcEEEEEeCcHh----------HHHHHHHHHHcc-CceeeEec
Confidence 9876533 345788999999999999998764321 467888888876 98877654
No 65
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.62 E-value=1.1e-14 Score=120.52 Aligned_cols=139 Identities=18% Similarity=0.197 Sum_probs=108.8
Q ss_pred CCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC--CCCCeeEEEeccc
Q 024021 106 ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--PTELFDLIFDYTF 183 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~D~v~~~~~ 183 (274)
..++.+|||+|||+|..+..+++.+.+++++|+++.++..++++....+. .+++...|+.+.. ..++||+|++..+
T Consensus 46 ~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~fD~Ii~~~~ 123 (233)
T PRK05134 46 GLFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELAAEHPGQFDVVTCMEM 123 (233)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhhhhcCCCccEEEEhhH
Confidence 34567999999999999999988888999999999999999988765543 4778888876632 4578999999999
Q ss_pred ccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC-----------------CC--CCCcccCHHHHHHHHhcCCCcEE
Q 024021 184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH-----------------VG--GPPYKVSVSDYEEVLQPMGFQAI 244 (274)
Q Consensus 184 ~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~-----------------~~--~~~~~~~~~~~~~~l~~~Gf~~~ 244 (274)
+++.++ ...+++.+.++|+|||.+++........ .. .....++.+++.++++.+||.++
T Consensus 124 l~~~~~--~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~v 201 (233)
T PRK05134 124 LEHVPD--PASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLEVQ 201 (233)
T ss_pred hhccCC--HHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCeEe
Confidence 998854 3578899999999999999876532110 00 01123578899999999999998
Q ss_pred EEee
Q 024021 245 SIVD 248 (274)
Q Consensus 245 ~~~~ 248 (274)
....
T Consensus 202 ~~~~ 205 (233)
T PRK05134 202 DITG 205 (233)
T ss_pred eeee
Confidence 7754
No 66
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.61 E-value=5.1e-15 Score=125.03 Aligned_cols=132 Identities=23% Similarity=0.253 Sum_probs=101.3
Q ss_pred HHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCee
Q 024021 98 IVHLHQSGALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFD 176 (274)
Q Consensus 98 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D 176 (274)
..+++.....++.+|||+|||+|.+++..++.|+ +|+++|++|.+++.|++|+..++...++.+. ........+||
T Consensus 151 cl~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~---~~~~~~~~~~d 227 (295)
T PF06325_consen 151 CLELLEKYVKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS---LSEDLVEGKFD 227 (295)
T ss_dssp HHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES---CTSCTCCS-EE
T ss_pred HHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE---EecccccccCC
Confidence 4455555567788999999999999999999888 7999999999999999999999987766553 12223348899
Q ss_pred EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024021 177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD 248 (274)
Q Consensus 177 ~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 248 (274)
+|+++-... .+..++..+.++|+|||++++.-.-.. ..+++.+.+++ ||.++....
T Consensus 228 lvvANI~~~-----vL~~l~~~~~~~l~~~G~lIlSGIl~~----------~~~~v~~a~~~-g~~~~~~~~ 283 (295)
T PF06325_consen 228 LVVANILAD-----VLLELAPDIASLLKPGGYLILSGILEE----------QEDEVIEAYKQ-GFELVEERE 283 (295)
T ss_dssp EEEEES-HH-----HHHHHHHHCHHHEEEEEEEEEEEEEGG----------GHHHHHHHHHT-TEEEEEEEE
T ss_pred EEEECCCHH-----HHHHHHHHHHHhhCCCCEEEEccccHH----------HHHHHHHHHHC-CCEEEEEEE
Confidence 999876654 335677889999999999998654332 57888889977 999987655
No 67
>PLN03075 nicotianamine synthase; Provisional
Probab=99.61 E-value=1.2e-14 Score=121.99 Aligned_cols=137 Identities=16% Similarity=0.135 Sum_probs=103.5
Q ss_pred cchhHhhhcCCCCccCCCccHHHHHHHhcC-----------CCCCCeEEEEcCCcchhH-HHhhC---CCCeEEEEeCCh
Q 024021 76 GGWEKCWEEGLTPWDIGQPAPIIVHLHQSG-----------ALPKGRALVPGCGTGYDV-VAMAS---PERYVVGLEISD 140 (274)
Q Consensus 76 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~vLDiG~G~G~~~-~~l~~---~~~~v~~vD~~~ 140 (274)
.+|.........+|......++...+++.. ..++.+|+|||||.|..+ ..++. ++.+++++|.++
T Consensus 80 ~~~a~~i~~~~~p~~~l~~Fpy~~nY~~L~~lE~~~L~~~~~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~ 159 (296)
T PLN03075 80 AHFSTILGSFDNPLDHLNLFPYYNNYLKLSKLEFDLLSQHVNGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDP 159 (296)
T ss_pred HHHHHHHhcCCcHHHHhhcCCchHHHHHHHHHHHHHHHHhhcCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCH
Confidence 455555555556666555544444443321 225689999999977543 33332 667999999999
Q ss_pred HHHHHHHHHhhc-CCCCcceEEEEcccCCCC-CCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021 141 IAIKKAEELSSS-LPNAKFVSFLKADFFTWC-PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 141 ~~~~~a~~~~~~-~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 213 (274)
++++.|++.+.. .++.++++|..+|+.+.. ..++||+|++. ++.+++.+....+++++.+.|+|||.+++-.
T Consensus 160 ~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 160 SANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred HHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 999999999954 667788999999998854 34689999999 8888876677899999999999999999876
No 68
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.60 E-value=7.8e-17 Score=115.39 Aligned_cols=95 Identities=33% Similarity=0.478 Sum_probs=62.2
Q ss_pred EEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCc--ceEEEEcccCCCCCCCCeeEEEecccccccC
Q 024021 113 LVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAK--FVSFLKADFFTWCPTELFDLIFDYTFFCAIE 188 (274)
Q Consensus 113 LDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~ 188 (274)
||+|||+|..+..+++ +..+++++|+|+.+++.++++........ .+++...+..+....++||+|++..+++|+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l- 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL- 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS---
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh-
Confidence 7999999999998877 47799999999999998888887654321 233333333333334689999999999999
Q ss_pred hhHHHHHHHHHHhcccCCcEE
Q 024021 189 PEMRAAWAQKIKDFLKPDGEL 209 (274)
Q Consensus 189 ~~~~~~~l~~~~~~L~pgG~~ 209 (274)
++...+++.++++|+|||+|
T Consensus 80 -~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 -EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -S-HHHHHHHHTTT-TSS-EE
T ss_pred -hhHHHHHHHHHHHcCCCCCC
Confidence 45678999999999999986
No 69
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.60 E-value=7.6e-15 Score=118.70 Aligned_cols=126 Identities=21% Similarity=0.100 Sum_probs=98.4
Q ss_pred CCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEccc-CCC---CCCCCeeEEEec
Q 024021 108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADF-FTW---CPTELFDLIFDY 181 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~-~~~---~~~~~~D~v~~~ 181 (274)
++.+|||+|||+|..+..+++ ++.+++++|+++.+++.++++....+. .++.++.+|+ ... .+.++||+|+++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL-TNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC-CCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 567999999999999998876 456899999999999999998877655 5699999998 432 446789999987
Q ss_pred ccccccCh------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEE
Q 024021 182 TFFCAIEP------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAI 244 (274)
Q Consensus 182 ~~~~~~~~------~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~ 244 (274)
....+... .....+++.+.++|+|||.+++..... .-..++.+.+++.|+.+.
T Consensus 119 ~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~----------~~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 119 FPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWE----------GYAEYMLEVLSAEGGFLV 177 (202)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCH----------HHHHHHHHHHHhCccccc
Confidence 54332110 013578999999999999999876322 135688899999998765
No 70
>PRK06202 hypothetical protein; Provisional
Probab=99.60 E-value=1.5e-14 Score=119.66 Aligned_cols=138 Identities=14% Similarity=0.076 Sum_probs=100.8
Q ss_pred CCCCeEEEEcCCcchhHHHhhC------CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEE
Q 024021 107 LPKGRALVPGCGTGYDVVAMAS------PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIF 179 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~ 179 (274)
.++.+|||+|||+|.++..+++ .+.+++|+|+++.+++.|+++.... ++++...+... ..++++||+|+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~----~~~~~~~~~~~l~~~~~~fD~V~ 134 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP----GVTFRQAVSDELVAEGERFDVVT 134 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC----CCeEEEEecccccccCCCccEEE
Confidence 3457999999999999887764 2359999999999999999876433 35555555443 22457899999
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC-------------------CCC---CCcccCHHHHHHHHh
Q 024021 180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH-------------------VGG---PPYKVSVSDYEEVLQ 237 (274)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~-------------------~~~---~~~~~~~~~~~~~l~ 237 (274)
++.+++|++++....+++++.++++ |.+++.++..... ..+ ....++.+++.++++
T Consensus 135 ~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ll~ 212 (232)
T PRK06202 135 SNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRLAYALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAALAP 212 (232)
T ss_pred ECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHHHHHHHHHHHHHhccCceeeccchHHHHhhcCHHHHHHHhh
Confidence 9999999987777789999999998 5555544432210 001 112368999999999
Q ss_pred cCCCcEEEEeeccc
Q 024021 238 PMGFQAISIVDNKL 251 (274)
Q Consensus 238 ~~Gf~~~~~~~~~~ 251 (274)
+ ||++........
T Consensus 213 ~-Gf~~~~~~~~~~ 225 (232)
T PRK06202 213 Q-GWRVERQWPFRY 225 (232)
T ss_pred C-CCeEEeccceee
Confidence 9 999877655443
No 71
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.60 E-value=3.1e-14 Score=117.12 Aligned_cols=138 Identities=18% Similarity=0.198 Sum_probs=108.1
Q ss_pred CCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC--CCCeeEEEeccccc
Q 024021 108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--TELFDLIFDYTFFC 185 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~D~v~~~~~~~ 185 (274)
.+.+|||+|||+|.++..+++.+..++++|+++.+++.++++....+. .++++...|+.+... .++||+|++..+++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~ 123 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPL-LKIEYRCTSVEDLAEKGAKSFDVVTCMEVLE 123 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCC-CceEEEeCCHHHhhcCCCCCccEEEehhHHH
Confidence 467999999999999998888778899999999999999998766543 258888888876322 36899999999999
Q ss_pred ccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC-----------------CCC--CCcccCHHHHHHHHhcCCCcEEEE
Q 024021 186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH-----------------VGG--PPYKVSVSDYEEVLQPMGFQAISI 246 (274)
Q Consensus 186 ~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~-----------------~~~--~~~~~~~~~~~~~l~~~Gf~~~~~ 246 (274)
++.+ ...+++.+.++|+|||.+++........ ..+ ....++.+++.++++++||+++.+
T Consensus 124 ~~~~--~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~i~~~ 201 (224)
T TIGR01983 124 HVPD--PQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAGLRVKDV 201 (224)
T ss_pred hCCC--HHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCeeeee
Confidence 8853 3578999999999999988876432210 001 112347889999999999999887
Q ss_pred ee
Q 024021 247 VD 248 (274)
Q Consensus 247 ~~ 248 (274)
..
T Consensus 202 ~~ 203 (224)
T TIGR01983 202 KG 203 (224)
T ss_pred ee
Confidence 64
No 72
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.59 E-value=4.3e-14 Score=119.97 Aligned_cols=129 Identities=23% Similarity=0.276 Sum_probs=102.3
Q ss_pred CCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccc
Q 024021 108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC 185 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~ 185 (274)
++.+|||+|||+|..+..+++ ++.+++++|+|+.+++.|+++....+..++++++.+|+.+..+.++||+|+++..+.
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPYV 200 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCCC
Confidence 346999999999999999987 467999999999999999999988877678999999998755556899999986542
Q ss_pred c------cCh-----------------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCc
Q 024021 186 A------IEP-----------------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQ 242 (274)
Q Consensus 186 ~------~~~-----------------~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 242 (274)
. +++ +....++..+.++|+|||++++... .+.+.+.+++..+||.
T Consensus 201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g------------~~~~~v~~~~~~~~~~ 268 (284)
T TIGR03533 201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG------------NSMEALEEAYPDVPFT 268 (284)
T ss_pred CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC------------cCHHHHHHHHHhCCCc
Confidence 2 111 1235778899999999999887551 1456899999999987
Q ss_pred EEEEee
Q 024021 243 AISIVD 248 (274)
Q Consensus 243 ~~~~~~ 248 (274)
-.....
T Consensus 269 ~~~~~~ 274 (284)
T TIGR03533 269 WLEFEN 274 (284)
T ss_pred eeeecC
Confidence 754433
No 73
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.58 E-value=4.8e-14 Score=115.73 Aligned_cols=138 Identities=20% Similarity=0.232 Sum_probs=107.9
Q ss_pred CCCeEEEEcCCcchhHHHhhCCC---CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCCeeEEEeccc
Q 024021 108 PKGRALVPGCGTGYDVVAMASPE---RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTF 183 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~ 183 (274)
++.+|||+|||+|..+..+++.. .+++++|+++.+++.++++.. ...++++..+|+.+. .+.++||+|+++.+
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~ 115 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALPFEDNSFDAVTIAFG 115 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCCCCCCcEEEEEEeee
Confidence 56899999999999999888733 489999999999999998875 225689999999873 34568999999998
Q ss_pred ccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCC-----------------------CC--C-------CcccCHHH
Q 024021 184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHV-----------------------GG--P-------PYKVSVSD 231 (274)
Q Consensus 184 ~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~-----------------------~~--~-------~~~~~~~~ 231 (274)
+++.+ ....+++.+.+.|+|||++++.++...... .. . ....+.++
T Consensus 116 ~~~~~--~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (223)
T TIGR01934 116 LRNVT--DIQKALREMYRVLKPGGRLVILEFSKPANALLKKFYKFYLKNVLPSIGGLISKNAEAYTYLPESIRAFPSQEE 193 (223)
T ss_pred eCCcc--cHHHHHHHHHHHcCCCcEEEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhcCCchhhHHHHHHHHhCCCHHH
Confidence 88775 356789999999999999998775432210 00 0 01236788
Q ss_pred HHHHHhcCCCcEEEEeecc
Q 024021 232 YEEVLQPMGFQAISIVDNK 250 (274)
Q Consensus 232 ~~~~l~~~Gf~~~~~~~~~ 250 (274)
+.++++++||+.+.+....
T Consensus 194 ~~~~l~~aGf~~~~~~~~~ 212 (223)
T TIGR01934 194 LAAMLKEAGFEEVRYRSLT 212 (223)
T ss_pred HHHHHHHcCCccceeeeee
Confidence 9999999999988877644
No 74
>PRK04266 fibrillarin; Provisional
Probab=99.58 E-value=6.6e-14 Score=114.59 Aligned_cols=134 Identities=20% Similarity=0.226 Sum_probs=95.0
Q ss_pred CCCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC----CCCCCeeEEEe
Q 024021 107 LPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW----CPTELFDLIFD 180 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~D~v~~ 180 (274)
.++.+|||+|||+|.++..+++. ..+|+++|+++.+++.+.++.... .++.++.+|...+ ...++||+|++
T Consensus 71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~~~~l~~~~D~i~~ 147 (226)
T PRK04266 71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPERYAHVVEKVDVIYQ 147 (226)
T ss_pred CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcchhhhccccCCEEEE
Confidence 45679999999999999999873 358999999999999877766543 4689999998752 11356999995
Q ss_pred cccccccChhHHHHHHHHHHhcccCCcEEEEEEccC-CCCCCCCCcccCHHHHHHHHhcCCCcEEEEeec
Q 024021 181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI-SDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDN 249 (274)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 249 (274)
... .+.....+++.+.++|||||.+++..... .+.... +... .++..++++++||+.++..+.
T Consensus 148 d~~----~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~-~~~~-~~~~~~~l~~aGF~~i~~~~l 211 (226)
T PRK04266 148 DVA----QPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKD-PKEI-FKEEIRKLEEGGFEILEVVDL 211 (226)
T ss_pred CCC----ChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCC-HHHH-HHHHHHHHHHcCCeEEEEEcC
Confidence 422 12233456899999999999999843221 111111 1111 244569999999999988774
No 75
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.57 E-value=1.5e-14 Score=106.67 Aligned_cols=105 Identities=24% Similarity=0.321 Sum_probs=88.0
Q ss_pred CCeEEEEcCCcchhHHHhhCCC-CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC---CCCCCeeEEEecccc
Q 024021 109 KGRALVPGCGTGYDVVAMASPE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---CPTELFDLIFDYTFF 184 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~D~v~~~~~~ 184 (274)
+.+|||+|||+|.++..+++.+ .+++++|+++.+++.++.++...+...+++++.+|+.+. .+.++||+|+++..+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 3589999999999999998877 899999999999999999999988778899999999873 467899999999888
Q ss_pred cccCh------hHHHHHHHHHHhcccCCcEEEEEE
Q 024021 185 CAIEP------EMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 185 ~~~~~------~~~~~~l~~~~~~L~pgG~~~~~~ 213 (274)
..... .....+++++.++|+|||.+++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 75321 234688999999999999998865
No 76
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.57 E-value=1.1e-13 Score=111.70 Aligned_cols=123 Identities=19% Similarity=0.171 Sum_probs=96.5
Q ss_pred CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC--CCCCeeEEEe
Q 024021 106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--PTELFDLIFD 180 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~D~v~~ 180 (274)
..++.+|||+|||+|.++..+++ .+.+|+++|+++.+++.+++++...+..+++.++.+|..+.. ..+.||.|++
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~ 117 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFI 117 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEE
Confidence 34568999999999999988765 346999999999999999999887765568999999987632 2367999998
Q ss_pred cccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcE
Q 024021 181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQA 243 (274)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~ 243 (274)
.... .....+++.+.+.|+|||++++..... -+..+..+.++++||..
T Consensus 118 ~~~~-----~~~~~~l~~~~~~LkpgG~lv~~~~~~----------~~~~~~~~~l~~~g~~~ 165 (198)
T PRK00377 118 GGGS-----EKLKEIISASWEIIKKGGRIVIDAILL----------ETVNNALSALENIGFNL 165 (198)
T ss_pred CCCc-----ccHHHHHHHHHHHcCCCcEEEEEeecH----------HHHHHHHHHHHHcCCCe
Confidence 5422 234578899999999999998744211 14678889999999954
No 77
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.57 E-value=7.1e-14 Score=111.19 Aligned_cols=139 Identities=19% Similarity=0.215 Sum_probs=102.9
Q ss_pred CeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCC-CCeeEEEeccccccc
Q 024021 110 GRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT-ELFDLIFDYTFFCAI 187 (274)
Q Consensus 110 ~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~D~v~~~~~~~~~ 187 (274)
.+.||+|||.|..+..++.+-+ +|-.+|..+..++.|++...... ....++++..+.++.|. .+||+||+.+++.|+
T Consensus 57 ~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~-~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lghL 135 (218)
T PF05891_consen 57 NRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDN-PRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGHL 135 (218)
T ss_dssp SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGG-CCEEEEEES-GGG----TT-EEEEEEES-GGGS
T ss_pred ceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccC-CCcceEEecCHhhccCCCCcEeEEEehHhhccC
Confidence 6999999999999998876545 89999999999999998765521 13467888888886664 689999999999999
Q ss_pred ChhHHHHHHHHHHhcccCCcEEEEEEccCCCC-----CCCCCcccCHHHHHHHHhcCCCcEEEEeec
Q 024021 188 EPEMRAAWAQKIKDFLKPDGELITLMFPISDH-----VGGPPYKVSVSDYEEVLQPMGFQAISIVDN 249 (274)
Q Consensus 188 ~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 249 (274)
.++++..++.++...|+|+|.|++-+...... ....+..-+.+.+.++++++|++++..+..
T Consensus 136 TD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q 202 (218)
T PF05891_consen 136 TDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEKQ 202 (218)
T ss_dssp -HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-
T ss_pred CHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEeccc
Confidence 99999999999999999999999965433221 111233457899999999999999887653
No 78
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.57 E-value=9.1e-14 Score=121.42 Aligned_cols=105 Identities=17% Similarity=0.209 Sum_probs=87.7
Q ss_pred CCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCC--cceEEEEcccCCCCCCCCeeEEEecccc
Q 024021 109 KGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNA--KFVSFLKADFFTWCPTELFDLIFDYTFF 184 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~D~v~~~~~~ 184 (274)
..+|||+|||+|.++..+++ ++.+|+++|.|+.+++.|++++..++.. .+++++..|..+..+..+||+|+++.++
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~~~fDlIlsNPPf 308 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFRFNAVLCNPPF 308 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCCCCEEEEEECcCc
Confidence 36999999999999999887 4679999999999999999998766432 3689999998775555689999999887
Q ss_pred ccc---ChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021 185 CAI---EPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 185 ~~~---~~~~~~~~l~~~~~~L~pgG~~~~~~ 213 (274)
+.. .+.....++..+.++|+|||.++++.
T Consensus 309 h~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 309 HQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred ccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 653 33455688999999999999999885
No 79
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.56 E-value=3.5e-13 Score=118.04 Aligned_cols=127 Identities=23% Similarity=0.268 Sum_probs=98.7
Q ss_pred CCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-C-CCCCeeEEEeccc
Q 024021 108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-C-PTELFDLIFDYTF 183 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~-~~~~~D~v~~~~~ 183 (274)
++.+|||+|||+|..+..++. ++.+++++|+|+.+++.|+++....+ .+++++.+|+.+. . ..++||+|+++.+
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g--~rV~fi~gDl~e~~l~~~~~FDLIVSNPP 328 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLG--ARVEFAHGSWFDTDMPSEGKWDIIVSNPP 328 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--CcEEEEEcchhccccccCCCccEEEECCC
Confidence 456999999999999998875 57799999999999999999987765 3799999999763 2 2457999999886
Q ss_pred ccccCh-----------------------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCC
Q 024021 184 FCAIEP-----------------------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMG 240 (274)
Q Consensus 184 ~~~~~~-----------------------~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 240 (274)
+..-.+ +....+++.+.+.|+|||.+++... . ...+.+.+++++.|
T Consensus 329 YI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG-~----------~Q~e~V~~ll~~~G 397 (423)
T PRK14966 329 YIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHG-F----------DQGAAVRGVLAENG 397 (423)
T ss_pred CCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEEC-c----------cHHHHHHHHHHHCC
Confidence 532110 1234677788899999999876541 1 14788999999999
Q ss_pred CcEEEEe
Q 024021 241 FQAISIV 247 (274)
Q Consensus 241 f~~~~~~ 247 (274)
|..+.+.
T Consensus 398 f~~v~v~ 404 (423)
T PRK14966 398 FSGVETL 404 (423)
T ss_pred CcEEEEE
Confidence 9876663
No 80
>PRK05785 hypothetical protein; Provisional
Probab=99.55 E-value=4.5e-14 Score=116.05 Aligned_cols=88 Identities=14% Similarity=0.115 Sum_probs=74.9
Q ss_pred CCCeEEEEcCCcchhHHHhhCC-CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEeccccc
Q 024021 108 PKGRALVPGCGTGYDVVAMASP-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFFC 185 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~~~~~ 185 (274)
++.+|||+|||||..+..+++. +.+|+|+|+|++|++.|++.. .++++|+.+ +.++++||+|++..+++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~---------~~~~~d~~~lp~~d~sfD~v~~~~~l~ 121 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD---------DKVVGSFEALPFRDKSFDVVMSSFALH 121 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc---------ceEEechhhCCCCCCCEEEEEecChhh
Confidence 4679999999999999999886 679999999999999998642 346788877 45678999999999999
Q ss_pred ccChhHHHHHHHHHHhcccCC
Q 024021 186 AIEPEMRAAWAQKIKDFLKPD 206 (274)
Q Consensus 186 ~~~~~~~~~~l~~~~~~L~pg 206 (274)
++++ ...+++++.++|+|.
T Consensus 122 ~~~d--~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 122 ASDN--IEKVIAEFTRVSRKQ 140 (226)
T ss_pred ccCC--HHHHHHHHHHHhcCc
Confidence 8853 467999999999994
No 81
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.55 E-value=1.4e-14 Score=121.63 Aligned_cols=105 Identities=24% Similarity=0.323 Sum_probs=85.2
Q ss_pred CCeEEEEcCCcchh----HHHhhC-------CCCeEEEEeCChHHHHHHHHHhhcC------------------------
Q 024021 109 KGRALVPGCGTGYD----VVAMAS-------PERYVVGLEISDIAIKKAEELSSSL------------------------ 153 (274)
Q Consensus 109 ~~~vLDiG~G~G~~----~~~l~~-------~~~~v~~vD~~~~~~~~a~~~~~~~------------------------ 153 (274)
+.+|+|+|||+|.. ++.+++ .+.+|+|+|+|+.+++.|++.....
T Consensus 100 ~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v 179 (264)
T smart00138 100 RVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRV 179 (264)
T ss_pred CEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEE
Confidence 46999999999974 444433 1468999999999999999864210
Q ss_pred --CCCcceEEEEcccCCCC-CCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021 154 --PNAKFVSFLKADFFTWC-PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 154 --~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 213 (274)
....+++|...|+.+.. +.++||+|+|.++++|++++....++++++++|+|||++++..
T Consensus 180 ~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 180 KPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred ChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 01246899999999844 4678999999999999988888899999999999999999854
No 82
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.55 E-value=1.4e-13 Score=117.91 Aligned_cols=127 Identities=23% Similarity=0.267 Sum_probs=100.2
Q ss_pred CeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccc-
Q 024021 110 GRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA- 186 (274)
Q Consensus 110 ~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~- 186 (274)
.+|||+|||+|..+..++. ++.+++++|+|+.+++.|+++....+..++++++.+|+.+..+.++||+|+++.++..
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~~ 214 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVDA 214 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCCc
Confidence 6899999999999999886 4679999999999999999999887766789999999987555568999999865421
Q ss_pred -----cCh-----------------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEE
Q 024021 187 -----IEP-----------------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAI 244 (274)
Q Consensus 187 -----~~~-----------------~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~ 244 (274)
+++ +....++..+.++|+|||.+++... . +.+++.+++...||.-.
T Consensus 215 ~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g-~-----------~~~~~~~~~~~~~~~~~ 282 (307)
T PRK11805 215 EDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVG-N-----------SRVHLEEAYPDVPFTWL 282 (307)
T ss_pred cchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEEC-c-----------CHHHHHHHHhhCCCEEE
Confidence 110 2235778999999999999988541 1 34568888888887665
Q ss_pred EEee
Q 024021 245 SIVD 248 (274)
Q Consensus 245 ~~~~ 248 (274)
....
T Consensus 283 ~~~~ 286 (307)
T PRK11805 283 EFEN 286 (307)
T ss_pred EecC
Confidence 5443
No 83
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.55 E-value=1e-13 Score=120.34 Aligned_cols=127 Identities=16% Similarity=0.106 Sum_probs=102.4
Q ss_pred CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCCeeEEEeccccc
Q 024021 107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTFFC 185 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~~~ 185 (274)
.++.+|||+|||+|.++..++..+..++|+|+++.++..++.++...+..+ +++..+|+.+. .+.+.||+|+++.++.
T Consensus 181 ~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l~~~~~~~D~Iv~dPPyg 259 (329)
T TIGR01177 181 TEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKLPLSSESVDAIATDPPYG 259 (329)
T ss_pred CCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcCCcccCCCCEEEECCCCc
Confidence 456799999999999998888888999999999999999999988777654 88999999884 3457899999987664
Q ss_pred cc-------ChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024021 186 AI-------EPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD 248 (274)
Q Consensus 186 ~~-------~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 248 (274)
.. ..+....+++.+.++|+|||++++... +..++.++++.+|| ++....
T Consensus 260 ~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~-------------~~~~~~~~~~~~g~-i~~~~~ 315 (329)
T TIGR01177 260 RSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVP-------------TRIDLESLAEDAFR-VVKRFE 315 (329)
T ss_pred CcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEc-------------CCCCHHHHHhhcCc-chheee
Confidence 31 113357899999999999999888762 23366778999999 766554
No 84
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.55 E-value=1.9e-13 Score=115.66 Aligned_cols=141 Identities=23% Similarity=0.228 Sum_probs=97.1
Q ss_pred CCCeEEEEcCCcchhHHHhhCC-----CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEec
Q 024021 108 PKGRALVPGCGTGYDVVAMASP-----ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDY 181 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~~-----~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~ 181 (274)
...+|||+|||+|.++..+++. +..++|+|+|+.++..|+++. +++.+..+|+.+ +.++++||+|++.
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~lp~~~~sfD~I~~~ 158 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQVTFCVASSHRLPFADQSLDAIIRI 158 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CCCeEEEeecccCCCcCCceeEEEEe
Confidence 4478999999999999888652 247999999999999998764 458899999887 4556789999975
Q ss_pred ccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC------C-CCCCcccCHHHHHHHHhcCCCcEEEEeecccccC
Q 024021 182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH------V-GGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIG 254 (274)
Q Consensus 182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~------~-~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~ 254 (274)
... ..++++.++|+|||+++++..+.... . ..+..+.... ....||+.+..+.......
T Consensus 159 ~~~---------~~~~e~~rvLkpgG~li~~~p~~~~l~el~~~~~~~~~~~~~~~-----~~~~gF~~~~~~~~~~~~~ 224 (272)
T PRK11088 159 YAP---------CKAEELARVVKPGGIVITVTPGPRHLFELKGLIYDEVRLHAPEA-----EQLEGFELQHSERLAYPMR 224 (272)
T ss_pred cCC---------CCHHHHHhhccCCCEEEEEeCCCcchHHHHHHhcccccccccch-----hhccCCCeeeEEEEEEEEE
Confidence 431 23478999999999999987554311 0 0111111111 1235899888877666665
Q ss_pred CccchhHHHHhhhhhc
Q 024021 255 PRKGREKLGRWKRSVR 270 (274)
Q Consensus 255 ~~~~~~~~~~~~~~~~ 270 (274)
. ++.+.+. |.+..+
T Consensus 225 l-~~~~~~~-ll~mtP 238 (272)
T PRK11088 225 L-TGSEAVA-LLQMTP 238 (272)
T ss_pred e-CHHHHHH-HHcCCc
Confidence 4 3344444 666543
No 85
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.55 E-value=4.2e-13 Score=113.88 Aligned_cols=128 Identities=25% Similarity=0.315 Sum_probs=99.4
Q ss_pred CCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccc
Q 024021 107 LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF 184 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~ 184 (274)
.++.+|||+|||+|..+..++. +..+++++|+++.+++.++++.. .....++.++.+|+.+..+.++||+|+++..+
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy 185 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWFEPLPGGRFDLIVSNPPY 185 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccccCcCCCCceeEEEECCCc
Confidence 3457999999999999999987 45799999999999999999987 22335799999999875556789999998665
Q ss_pred cccC------h------------------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCC
Q 024021 185 CAIE------P------------------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMG 240 (274)
Q Consensus 185 ~~~~------~------------------~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 240 (274)
.... + +....+++.+.++|+|||.+++... . ...+++.++++..|
T Consensus 186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g--------~---~~~~~~~~~l~~~g 254 (275)
T PRK09328 186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIG--------Y---DQGEAVRALLAAAG 254 (275)
T ss_pred CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEEC--------c---hHHHHHHHHHHhCC
Confidence 3211 1 1235678888899999999988541 1 13567999999999
Q ss_pred CcEEEE
Q 024021 241 FQAISI 246 (274)
Q Consensus 241 f~~~~~ 246 (274)
|..+.+
T Consensus 255 f~~v~~ 260 (275)
T PRK09328 255 FADVET 260 (275)
T ss_pred CceeEE
Confidence 986655
No 86
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=8.5e-14 Score=112.70 Aligned_cols=125 Identities=26% Similarity=0.274 Sum_probs=104.1
Q ss_pred CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecc
Q 024021 106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYT 182 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~ 182 (274)
..++.+|||.|+|+|.++.+|+. +..+|+.+|+.++.++.|++|+...++.+++++..+|+.+....+.||.|+
T Consensus 92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~~vDav~--- 168 (256)
T COG2519 92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEEDVDAVF--- 168 (256)
T ss_pred CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccccccCEEE---
Confidence 45678999999999999999986 446999999999999999999999888888999999999966666999999
Q ss_pred cccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEe
Q 024021 183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIV 247 (274)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 247 (274)
++-++...++++++++|+|||.+++..... -..+...+.|++.||..++..
T Consensus 169 ----LDmp~PW~~le~~~~~Lkpgg~~~~y~P~v----------eQv~kt~~~l~~~g~~~ie~~ 219 (256)
T COG2519 169 ----LDLPDPWNVLEHVSDALKPGGVVVVYSPTV----------EQVEKTVEALRERGFVDIEAV 219 (256)
T ss_pred ----EcCCChHHHHHHHHHHhCCCcEEEEEcCCH----------HHHHHHHHHHHhcCccchhhh
Confidence 333455789999999999999998876322 245667777888898876653
No 87
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.54 E-value=1.1e-13 Score=112.15 Aligned_cols=99 Identities=22% Similarity=0.151 Sum_probs=82.3
Q ss_pred CCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCCeeEEEecc
Q 024021 107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYT 182 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~ 182 (274)
.++.+|||+|||+|..+..+++ .+.+|+++|+++++++.|++++...+..++++++.+|..+. ....+||+|++..
T Consensus 71 ~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~ 150 (205)
T PRK13944 71 RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVTA 150 (205)
T ss_pred CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEEcc
Confidence 3557999999999999988776 24699999999999999999988777666799999999873 3346899999998
Q ss_pred cccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021 183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 213 (274)
++.+++ +.+.+.|+|||++++..
T Consensus 151 ~~~~~~--------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 151 AASTIP--------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred Ccchhh--------HHHHHhcCcCcEEEEEE
Confidence 877664 35778999999998865
No 88
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.54 E-value=2.2e-13 Score=116.74 Aligned_cols=104 Identities=21% Similarity=0.197 Sum_probs=82.0
Q ss_pred CCCeEEEEcCCcchhHHHhhCC---CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC--CCCC----CeeEE
Q 024021 108 PKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--CPTE----LFDLI 178 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~----~~D~v 178 (274)
++.+|||+|||+|..+..+++. +.+|+++|+|+++++.+++++.......++.++.+|+.+. .+.. ...++
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~ 142 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGF 142 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEE
Confidence 4579999999999999988874 6799999999999999998875432123577889999862 2221 23345
Q ss_pred EecccccccChhHHHHHHHHHHhcccCCcEEEE
Q 024021 179 FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT 211 (274)
Q Consensus 179 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~ 211 (274)
++...+++++++....++++++++|+|||.+++
T Consensus 143 ~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~li 175 (301)
T TIGR03438 143 FPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLI 175 (301)
T ss_pred EecccccCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 555678888888888999999999999999986
No 89
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.54 E-value=3.7e-13 Score=114.57 Aligned_cols=126 Identities=21% Similarity=0.271 Sum_probs=99.1
Q ss_pred CeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccccc
Q 024021 110 GRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAI 187 (274)
Q Consensus 110 ~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~ 187 (274)
.+|||+|||+|..+..++. ++.+++++|+++.+++.|+++....+..++++++.+|+.+..+.++||+|+++..+..-
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~~ 195 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYIDE 195 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCCc
Confidence 6899999999999999987 45799999999999999999998777666799999999886555589999998544221
Q ss_pred -------------Ch----------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHh-cCCCcE
Q 024021 188 -------------EP----------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQ-PMGFQA 243 (274)
Q Consensus 188 -------------~~----------~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gf~~ 243 (274)
|. .....++..+.++|+|||++++..... ..+.+.+++. ..||..
T Consensus 196 ~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~-----------q~~~~~~~~~~~~~~~~ 264 (284)
T TIGR00536 196 EDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW-----------QQKSLKELLRIKFTWYD 264 (284)
T ss_pred chhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc-----------HHHHHHHHHHhcCCCce
Confidence 10 134678899999999999988765211 3567788887 468876
Q ss_pred EEE
Q 024021 244 ISI 246 (274)
Q Consensus 244 ~~~ 246 (274)
+.+
T Consensus 265 ~~~ 267 (284)
T TIGR00536 265 VEN 267 (284)
T ss_pred eEE
Confidence 655
No 90
>PRK06922 hypothetical protein; Provisional
Probab=99.53 E-value=8.3e-14 Score=127.25 Aligned_cols=106 Identities=18% Similarity=0.211 Sum_probs=88.0
Q ss_pred CCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC---CCCCCeeEEEec
Q 024021 107 LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---CPTELFDLIFDY 181 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~D~v~~~ 181 (274)
.++.+|||+|||+|..+..+++ ++.+++|+|+++.+++.|+++....+ .++.++.+|..+. .++++||+|+++
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g--~~ie~I~gDa~dLp~~fedeSFDvVVsn 494 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG--RSWNVIKGDAINLSSSFEKESVDTIVYS 494 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC--CCeEEEEcchHhCccccCCCCEEEEEEc
Confidence 3578999999999999888875 67899999999999999998875543 4588898998763 456789999999
Q ss_pred ccccccC-----------hhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021 182 TFFCAIE-----------PEMRAAWAQKIKDFLKPDGELITLMF 214 (274)
Q Consensus 182 ~~~~~~~-----------~~~~~~~l~~~~~~L~pgG~~~~~~~ 214 (274)
.+++++. ......+++++.++|+|||.+++.+.
T Consensus 495 ~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 495 SILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred hHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 8887642 34667899999999999999999874
No 91
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.53 E-value=1.8e-13 Score=124.82 Aligned_cols=127 Identities=20% Similarity=0.296 Sum_probs=100.6
Q ss_pred CCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccc
Q 024021 109 KGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA 186 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~ 186 (274)
+.+|||+|||+|.++..++. ++.+++++|+|+.+++.|+++....+..++++++.+|+.+..+.++||+|+++..+..
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi~ 218 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYIS 218 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCCC
Confidence 35899999999999998875 5779999999999999999999877776789999999877555568999999865432
Q ss_pred cCh------------------------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCc
Q 024021 187 IEP------------------------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQ 242 (274)
Q Consensus 187 ~~~------------------------~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 242 (274)
... +....+++.+.++|+|||.+++.. +. ...+.+.++++..||.
T Consensus 219 ~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi-g~----------~q~~~v~~~~~~~g~~ 287 (506)
T PRK01544 219 HSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI-GF----------KQEEAVTQIFLDHGYN 287 (506)
T ss_pred chhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE-CC----------chHHHHHHHHHhcCCC
Confidence 110 123457788889999999988754 11 1467888999999998
Q ss_pred EEEE
Q 024021 243 AISI 246 (274)
Q Consensus 243 ~~~~ 246 (274)
.+.+
T Consensus 288 ~~~~ 291 (506)
T PRK01544 288 IESV 291 (506)
T ss_pred ceEE
Confidence 7655
No 92
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.53 E-value=5.7e-13 Score=103.41 Aligned_cols=124 Identities=21% Similarity=0.241 Sum_probs=103.7
Q ss_pred CCCCCeEEEEcCCcchhHHHhh--CCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCC-CeeEEEecc
Q 024021 106 ALPKGRALVPGCGTGYDVVAMA--SPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE-LFDLIFDYT 182 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~--~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~D~v~~~~ 182 (274)
..++.+++|+|||||..+..++ .+..+++++|.++++++..++|....+ .+|+.++.+|.-+..++. ++|.|+..+
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg-~~n~~vv~g~Ap~~L~~~~~~daiFIGG 110 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFG-VDNLEVVEGDAPEALPDLPSPDAIFIGG 110 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhC-CCcEEEEeccchHhhcCCCCCCEEEECC
Confidence 5667899999999999999888 477899999999999999999999988 578999999998854433 699999877
Q ss_pred cccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCC-cEEEE
Q 024021 183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGF-QAISI 246 (274)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf-~~~~~ 246 (274)
. ..+ ..+++.+...|+|||++++..-... +.....+++++.|+ +++++
T Consensus 111 g-~~i-----~~ile~~~~~l~~ggrlV~naitlE----------~~~~a~~~~~~~g~~ei~~v 159 (187)
T COG2242 111 G-GNI-----EEILEAAWERLKPGGRLVANAITLE----------TLAKALEALEQLGGREIVQV 159 (187)
T ss_pred C-CCH-----HHHHHHHHHHcCcCCeEEEEeecHH----------HHHHHHHHHHHcCCceEEEE
Confidence 7 433 5789999999999999998764332 56788899999999 55544
No 93
>PHA03411 putative methyltransferase; Provisional
Probab=99.53 E-value=3.8e-13 Score=111.39 Aligned_cols=140 Identities=17% Similarity=0.218 Sum_probs=103.9
Q ss_pred CccHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC
Q 024021 93 QPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC 170 (274)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 170 (274)
+|...+..++.. .....+|||+|||+|.++..++.. +.+|+++|+++.+++.++++. ++++++.+|+.+..
T Consensus 50 TP~~i~~~f~~~-~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~------~~v~~v~~D~~e~~ 122 (279)
T PHA03411 50 TPEGLAWDFTID-AHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL------PEAEWITSDVFEFE 122 (279)
T ss_pred CCHHHHHHHHhc-cccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------cCCEEEECchhhhc
Confidence 344555444322 233579999999999998877663 569999999999999999875 35889999999866
Q ss_pred CCCCeeEEEecccccccChhH------------------HHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcc--cCHH
Q 024021 171 PTELFDLIFDYTFFCAIEPEM------------------RAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYK--VSVS 230 (274)
Q Consensus 171 ~~~~~D~v~~~~~~~~~~~~~------------------~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~--~~~~ 230 (274)
...+||+|+++..+.+.+... ....+.....+|+|+|.++++- .. .+-|+ .+++
T Consensus 123 ~~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~y-ss-----~~~y~~sl~~~ 196 (279)
T PHA03411 123 SNEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAY-SG-----RPYYDGTMKSN 196 (279)
T ss_pred ccCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEE-ec-----cccccccCCHH
Confidence 567899999999988764422 1356677788999999766652 22 11222 5799
Q ss_pred HHHHHHhcCCCcEEE
Q 024021 231 DYEEVLQPMGFQAIS 245 (274)
Q Consensus 231 ~~~~~l~~~Gf~~~~ 245 (274)
++.++++++||..-.
T Consensus 197 ~y~~~l~~~g~~~~~ 211 (279)
T PHA03411 197 KYLKWSKQTGLVTYA 211 (279)
T ss_pred HHHHHHHhcCcEecC
Confidence 999999999998743
No 94
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.53 E-value=1.9e-13 Score=101.59 Aligned_cols=100 Identities=17% Similarity=0.108 Sum_probs=81.3
Q ss_pred CCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC--CCCCCeeEEEeccc
Q 024021 108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--CPTELFDLIFDYTF 183 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~D~v~~~~~ 183 (274)
++.+|||+|||+|..+..+++ ++.+++++|+++.+++.++++....+. .+++++.+|+... ...++||+|++...
T Consensus 19 ~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~D~v~~~~~ 97 (124)
T TIGR02469 19 PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGV-SNIVIVEGDAPEALEDSLPEPDRVFIGGS 97 (124)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCC-CceEEEeccccccChhhcCCCCEEEECCc
Confidence 357999999999999999987 356999999999999999998876654 3689998887642 22358999998765
Q ss_pred ccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021 184 FCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 184 ~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 213 (274)
.. ....+++.+.+.|+|||.+++..
T Consensus 98 ~~-----~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 98 GG-----LLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred ch-----hHHHHHHHHHHHcCCCCEEEEEe
Confidence 43 33578999999999999998865
No 95
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.51 E-value=3.6e-13 Score=106.05 Aligned_cols=128 Identities=16% Similarity=0.207 Sum_probs=99.6
Q ss_pred CCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC--CCCCCCeeEEEecccccc
Q 024021 109 KGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT--WCPTELFDLIFDYTFFCA 186 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~D~v~~~~~~~~ 186 (274)
+.-|||||||+|..+..+...|..++|+|+|+.|++.|.+.--+ -.++.+|+-. ++.+++||.+|+..++++
T Consensus 51 ~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~e~e------gdlil~DMG~GlpfrpGtFDg~ISISAvQW 124 (270)
T KOG1541|consen 51 SGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVERELE------GDLILCDMGEGLPFRPGTFDGVISISAVQW 124 (270)
T ss_pred CcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHhhhh------cCeeeeecCCCCCCCCCccceEEEeeeeee
Confidence 46899999999999999999999999999999999999974311 3578888877 667889999999877665
Q ss_pred c---------ChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024021 187 I---------EPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNK 250 (274)
Q Consensus 187 ~---------~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 250 (274)
+ |..-+..++..++.+|++|++.++-.++..+. ..+-+.+....+||.---+.+++
T Consensus 125 LcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~--------q~d~i~~~a~~aGF~GGlvVd~P 189 (270)
T KOG1541|consen 125 LCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEA--------QIDMIMQQAMKAGFGGGLVVDWP 189 (270)
T ss_pred ecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchH--------HHHHHHHHHHhhccCCceeeecc
Confidence 4 22334567888999999999999988766433 45666677777787755555443
No 96
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.50 E-value=4.3e-13 Score=104.80 Aligned_cols=135 Identities=17% Similarity=0.192 Sum_probs=102.7
Q ss_pred CCCCCeEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---CCCCCCeeEEEec
Q 024021 106 ALPKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPTELFDLIFDY 181 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~D~v~~~ 181 (274)
..++.+|||+|||.|.++..|.+ .+...+|+|++++.+..+..+- +.++++|+.+ ..++++||.|+.+
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~rG--------v~Viq~Dld~gL~~f~d~sFD~VIls 82 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVARG--------VSVIQGDLDEGLADFPDQSFDYVILS 82 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHcC--------CCEEECCHHHhHhhCCCCCccEEehH
Confidence 34578999999999999999987 7889999999999988887664 7789999987 4678899999999
Q ss_pred ccccccChhHHHHHHHHHHhcccCCcEEEEEEccCC-----------------CC-----CCCCC-cccCHHHHHHHHhc
Q 024021 182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS-----------------DH-----VGGPP-YKVSVSDYEEVLQP 238 (274)
Q Consensus 182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~-----------------~~-----~~~~~-~~~~~~~~~~~l~~ 238 (274)
.+++++. ....+++++.|+ |...++...+-. .. -.+|. +..|..+++++.++
T Consensus 83 qtLQ~~~--~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~ 157 (193)
T PF07021_consen 83 QTLQAVR--RPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRE 157 (193)
T ss_pred hHHHhHh--HHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHH
Confidence 9999984 345677777665 555555432211 11 11122 23589999999999
Q ss_pred CCCcEEEEeeccccc
Q 024021 239 MGFQAISIVDNKLAI 253 (274)
Q Consensus 239 ~Gf~~~~~~~~~~~~ 253 (274)
.|+++++-.......
T Consensus 158 ~~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 158 LGIRIEERVFLDGGR 172 (193)
T ss_pred CCCEEEEEEEEcCCC
Confidence 999998877755544
No 97
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=8.6e-13 Score=111.50 Aligned_cols=124 Identities=26% Similarity=0.312 Sum_probs=98.7
Q ss_pred eEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccccC
Q 024021 111 RALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIE 188 (274)
Q Consensus 111 ~vLDiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~ 188 (274)
+|||+|||+|..+..++.. .++|+++|+|+.+++.|++|...+++ .++.++.+|+++.... +||+|++|..+-.-.
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf~~~~~-~fDlIVsNPPYip~~ 190 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL-VRVLVVQSDLFEPLRG-KFDLIVSNPPYIPAE 190 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeecccccCC-ceeEEEeCCCCCCCc
Confidence 7999999999999999984 45999999999999999999999887 6677788898886654 899999997753221
Q ss_pred -----h------------------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCC-CcEE
Q 024021 189 -----P------------------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMG-FQAI 244 (274)
Q Consensus 189 -----~------------------~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G-f~~~ 244 (274)
+ +....++..+.+.|+|||.+++..-.. ..+.+.+++.+.| |..+
T Consensus 191 ~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~-----------q~~~v~~~~~~~~~~~~v 259 (280)
T COG2890 191 DPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLT-----------QGEAVKALFEDTGFFEIV 259 (280)
T ss_pred ccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCC-----------cHHHHHHHHHhcCCceEE
Confidence 1 123678888999999999888865211 4788999999999 5544
Q ss_pred EEe
Q 024021 245 SIV 247 (274)
Q Consensus 245 ~~~ 247 (274)
...
T Consensus 260 ~~~ 262 (280)
T COG2890 260 ETL 262 (280)
T ss_pred EEE
Confidence 443
No 98
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.50 E-value=1.7e-13 Score=110.14 Aligned_cols=128 Identities=20% Similarity=0.183 Sum_probs=96.4
Q ss_pred CCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC----CCCCCeeEEEec
Q 024021 108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW----CPTELFDLIFDY 181 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~D~v~~~ 181 (274)
...+|||+|||+|.++..+++ ++..++|+|+++.+++.|+++....++. +++++.+|+.+. .+.+.+|.|+++
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 346899999999999998887 5679999999999999999988777654 799999999752 345689999987
Q ss_pred ccccccChhH------HHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCC-CcEEEE
Q 024021 182 TFFCAIEPEM------RAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMG-FQAISI 246 (274)
Q Consensus 182 ~~~~~~~~~~------~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G-f~~~~~ 246 (274)
....+..... ...+++.+.++|+|||.+++.+.... ..+++.+.+..++ |..+..
T Consensus 95 ~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~----------~~~~~~~~~~~~~~f~~~~~ 156 (194)
T TIGR00091 95 FPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEP----------LFEDMLKVLSENDLFENTSK 156 (194)
T ss_pred CCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHH----------HHHHHHHHHHhCCCeEeccc
Confidence 6533221110 14689999999999999988762221 2455667777776 776543
No 99
>PTZ00146 fibrillarin; Provisional
Probab=99.50 E-value=5.4e-13 Score=111.68 Aligned_cols=132 Identities=17% Similarity=0.138 Sum_probs=93.0
Q ss_pred CCCCeEEEEcCCcchhHHHhhCC---CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC----CCCCeeEEE
Q 024021 107 LPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC----PTELFDLIF 179 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~D~v~ 179 (274)
.++.+|||+|||+|.++..+++. ...|+++|+++.+........... .++.++.+|+..+. +.+.||+|+
T Consensus 131 kpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~Da~~p~~y~~~~~~vDvV~ 207 (293)
T PTZ00146 131 KPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPIIEDARYPQKYRMLVPMVDVIF 207 (293)
T ss_pred CCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCCEEEECCccChhhhhcccCCCCEEE
Confidence 45679999999999999999883 358999999987654444443322 46889999986531 345799999
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHH----HHHHhcCCCcEEEEeecc
Q 024021 180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDY----EEVLQPMGFQAISIVDNK 250 (274)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~Gf~~~~~~~~~ 250 (274)
+... .+++...++.++.++|||||.+++..... ....++ +++++ .++|+++||+.++..+..
T Consensus 208 ~Dva----~pdq~~il~~na~r~LKpGG~~vI~ika~-~id~g~----~pe~~f~~ev~~L~~~GF~~~e~v~L~ 273 (293)
T PTZ00146 208 ADVA----QPDQARIVALNAQYFLKNGGHFIISIKAN-CIDSTA----KPEVVFASEVQKLKKEGLKPKEQLTLE 273 (293)
T ss_pred EeCC----CcchHHHHHHHHHHhccCCCEEEEEEecc-ccccCC----CHHHHHHHHHHHHHHcCCceEEEEecC
Confidence 8764 22344566778999999999999943222 222222 33333 488999999988877643
No 100
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.49 E-value=7.9e-13 Score=106.37 Aligned_cols=133 Identities=14% Similarity=0.150 Sum_probs=95.9
Q ss_pred CCCeEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---CCCCCCeeEEEeccc
Q 024021 108 PKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPTELFDLIFDYTF 183 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~D~v~~~~~ 183 (274)
++.+|||+|||+|.++..+++ .+..++|+|+++++++.++.. +++++.+|+.+ ..++++||+|+++.+
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~--------~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~ 84 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR--------GVNVIQGDLDEGLEAFPDKSFDYVILSQT 84 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc--------CCeEEEEEhhhcccccCCCCcCEEEEhhH
Confidence 457999999999999988875 456889999999999988642 36788888865 234578999999999
Q ss_pred ccccChhHHHHHHHHHHhcccCCcEEEEEEccC--------------CC--C-------CCCCCcccCHHHHHHHHhcCC
Q 024021 184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI--------------SD--H-------VGGPPYKVSVSDYEEVLQPMG 240 (274)
Q Consensus 184 ~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~--------------~~--~-------~~~~~~~~~~~~~~~~l~~~G 240 (274)
++++++ ...+++++.+.+++ +++..... .. . ......+.+.+++.++++++|
T Consensus 85 l~~~~d--~~~~l~e~~r~~~~---~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~G 159 (194)
T TIGR02081 85 LQATRN--PEEILDEMLRVGRH---AIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELN 159 (194)
T ss_pred hHcCcC--HHHHHHHHHHhCCe---EEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCC
Confidence 999864 35677777776553 33321110 00 0 000123468999999999999
Q ss_pred CcEEEEeeccccc
Q 024021 241 FQAISIVDNKLAI 253 (274)
Q Consensus 241 f~~~~~~~~~~~~ 253 (274)
|+++.........
T Consensus 160 f~v~~~~~~~~~~ 172 (194)
T TIGR02081 160 LRILDRAAFDVDG 172 (194)
T ss_pred CEEEEEEEecccc
Confidence 9999987765433
No 101
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.47 E-value=6.4e-13 Score=108.61 Aligned_cols=98 Identities=26% Similarity=0.233 Sum_probs=80.4
Q ss_pred CCCCeEEEEcCCcchhHHHhhCC---CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCCeeEEEecc
Q 024021 107 LPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYT 182 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~ 182 (274)
.++.+|||+|||+|..+..+++. ..+|+++|+++++++.|++++...+. ++++++.+|.... ....+||+|++..
T Consensus 76 ~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-~~v~~~~~d~~~~~~~~~~fD~Ii~~~ 154 (215)
T TIGR00080 76 KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL-DNVIVIVGDGTQGWEPLAPYDRIYVTA 154 (215)
T ss_pred CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-CCeEEEECCcccCCcccCCCCEEEEcC
Confidence 45689999999999999988873 34699999999999999999988775 5799999999773 3346899999877
Q ss_pred cccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021 183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 213 (274)
....++ +.+.+.|+|||++++..
T Consensus 155 ~~~~~~--------~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 155 AGPKIP--------EALIDQLKEGGILVMPV 177 (215)
T ss_pred Cccccc--------HHHHHhcCcCcEEEEEE
Confidence 655443 45788899999998865
No 102
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.47 E-value=7.4e-13 Score=107.84 Aligned_cols=98 Identities=20% Similarity=0.186 Sum_probs=80.2
Q ss_pred CCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEecc
Q 024021 107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYT 182 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~~ 182 (274)
.++.+|||+|||+|..+..+++ .+.+|+++|+++++++.++++....+. .+++++.+|... .....+||+|++..
T Consensus 75 ~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~-~~v~~~~gd~~~~~~~~~~fD~I~~~~ 153 (212)
T PRK13942 75 KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY-DNVEVIVGDGTLGYEENAPYDRIYVTA 153 (212)
T ss_pred CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCeEEEECCcccCCCcCCCcCEEEECC
Confidence 4568999999999999988776 346999999999999999999887665 479999999877 33457899999887
Q ss_pred cccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021 183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 213 (274)
....++ ..+.+.|+|||++++..
T Consensus 154 ~~~~~~--------~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 154 AGPDIP--------KPLIEQLKDGGIMVIPV 176 (212)
T ss_pred Ccccch--------HHHHHhhCCCcEEEEEE
Confidence 665442 35677899999988865
No 103
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.47 E-value=1.7e-12 Score=108.36 Aligned_cols=126 Identities=17% Similarity=0.184 Sum_probs=97.3
Q ss_pred CeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC---CCCeeEEEecccc
Q 024021 110 GRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP---TELFDLIFDYTFF 184 (274)
Q Consensus 110 ~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~D~v~~~~~~ 184 (274)
.+|||+|||+|.++..+++ ++.+++++|+++.+++.|+++...++ ++++.+|+.+..+ .++||+|+++..+
T Consensus 88 ~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~~~l~~~~~~~fDlVv~NPPy 163 (251)
T TIGR03704 88 LVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG----GTVHEGDLYDALPTALRGRVDILAANAPY 163 (251)
T ss_pred CEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeechhhcchhcCCCEeEEEECCCC
Confidence 5899999999999998876 46799999999999999999987654 5789999876432 3579999999775
Q ss_pred cc------cChh------------------HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCC
Q 024021 185 CA------IEPE------------------MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMG 240 (274)
Q Consensus 185 ~~------~~~~------------------~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 240 (274)
.. ++++ ....++..+.++|+|||.+++..... ..+++.++++++|
T Consensus 164 ~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~-----------~~~~v~~~l~~~g 232 (251)
T TIGR03704 164 VPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSER-----------QAPLAVEAFARAG 232 (251)
T ss_pred CCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcc-----------hHHHHHHHHHHCC
Confidence 32 1111 13477888889999999999875221 4578999999999
Q ss_pred CcEEEEeecc
Q 024021 241 FQAISIVDNK 250 (274)
Q Consensus 241 f~~~~~~~~~ 250 (274)
|...-....+
T Consensus 233 ~~~~~~~~~~ 242 (251)
T TIGR03704 233 LIARVASSEE 242 (251)
T ss_pred CCceeeEccc
Confidence 9876655433
No 104
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=7.2e-13 Score=105.08 Aligned_cols=105 Identities=24% Similarity=0.253 Sum_probs=89.7
Q ss_pred HHhcC-CCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEE
Q 024021 101 LHQSG-ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLI 178 (274)
Q Consensus 101 ~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v 178 (274)
+++.+ ..++.+|||||||+|+.+..+++...+|+.+|..++..+.|++++...+.. |+.+.++|... +....+||.|
T Consensus 64 m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~-nV~v~~gDG~~G~~~~aPyD~I 142 (209)
T COG2518 64 MLQLLELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYE-NVTVRHGDGSKGWPEEAPYDRI 142 (209)
T ss_pred HHHHhCCCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCC-ceEEEECCcccCCCCCCCcCEE
Confidence 33433 456689999999999999999997679999999999999999999998875 49999999988 5556899999
Q ss_pred EecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021 179 FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (274)
Q Consensus 179 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 214 (274)
+.......+| +.+.+.|++||++++...
T Consensus 143 ~Vtaaa~~vP--------~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 143 IVTAAAPEVP--------EALLDQLKPGGRLVIPVG 170 (209)
T ss_pred EEeeccCCCC--------HHHHHhcccCCEEEEEEc
Confidence 9998888776 347788999999999774
No 105
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.47 E-value=1.6e-12 Score=112.92 Aligned_cols=103 Identities=19% Similarity=0.248 Sum_probs=85.6
Q ss_pred CCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccc
Q 024021 109 KGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA 186 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~ 186 (274)
..+|||+|||+|.++..+++ ++.+++++|+++.+++.+++++..++.. .+++..|..+.. .++||+|+++.+++.
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~--~~~~~~D~~~~~-~~~fDlIvsNPPFH~ 273 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLE--GEVFASNVFSDI-KGRFDMIISNPPFHD 273 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CEEEEccccccc-CCCccEEEECCCccC
Confidence 46899999999999999887 4569999999999999999998887643 567778876643 568999999999876
Q ss_pred c---ChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021 187 I---EPEMRAAWAQKIKDFLKPDGELITLMF 214 (274)
Q Consensus 187 ~---~~~~~~~~l~~~~~~L~pgG~~~~~~~ 214 (274)
. .......++..+.+.|+|||.++++..
T Consensus 274 g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 274 GIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred CccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 3 234567899999999999999988763
No 106
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.46 E-value=5.3e-14 Score=111.34 Aligned_cols=147 Identities=22% Similarity=0.259 Sum_probs=109.5
Q ss_pred HHHHHHhcCCCC-CCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---CCCC
Q 024021 97 IIVHLHQSGALP-KGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPT 172 (274)
Q Consensus 97 ~~~~~~~~~~~~-~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~---~~~~ 172 (274)
.+.+++...... -.++||+|||||..+..+.....+++|+|+|..|+++|.++-.. -+..++|... ...+
T Consensus 113 ~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eKg~Y------D~L~~Aea~~Fl~~~~~ 186 (287)
T COG4976 113 LLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKGLY------DTLYVAEAVLFLEDLTQ 186 (287)
T ss_pred HHHHHHHhccCCccceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhccch------HHHHHHHHHHHhhhccC
Confidence 355566544333 36999999999999999988777999999999999999876422 1223333332 2445
Q ss_pred CCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCC-----CCCCcccCHHHHHHHHhcCCCcEEEEe
Q 024021 173 ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHV-----GGPPYKVSVSDYEEVLQPMGFQAISIV 247 (274)
Q Consensus 173 ~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 247 (274)
++||+|.+..++.++ ..+..++-.+...|+|||.+.+..-...+.. ....|..+...+..+++..||.++.++
T Consensus 187 er~DLi~AaDVl~Yl--G~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~ 264 (287)
T COG4976 187 ERFDLIVAADVLPYL--GALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIE 264 (287)
T ss_pred CcccchhhhhHHHhh--cchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEee
Confidence 789999999999988 4667888999999999999888664433321 112344688999999999999999987
Q ss_pred eccc
Q 024021 248 DNKL 251 (274)
Q Consensus 248 ~~~~ 251 (274)
+...
T Consensus 265 ~tti 268 (287)
T COG4976 265 DTTI 268 (287)
T ss_pred cccc
Confidence 7443
No 107
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.46 E-value=6.4e-13 Score=110.58 Aligned_cols=100 Identities=24% Similarity=0.330 Sum_probs=86.5
Q ss_pred CeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccccc
Q 024021 110 GRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAI 187 (274)
Q Consensus 110 ~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~ 187 (274)
.+|+|||+|+|.++..+++ ++.+++.+|. |++++.+++ .++++++.+|+++..|. +|+|+..+++|.+
T Consensus 102 ~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f~~~P~--~D~~~l~~vLh~~ 171 (241)
T PF00891_consen 102 KTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-------ADRVEFVPGDFFDPLPV--ADVYLLRHVLHDW 171 (241)
T ss_dssp SEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-------TTTEEEEES-TTTCCSS--ESEEEEESSGGGS
T ss_pred cEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-------ccccccccccHHhhhcc--ccceeeehhhhhc
Confidence 6899999999999999887 8889999999 999999988 37899999999966655 9999999999999
Q ss_pred ChhHHHHHHHHHHhcccCC--cEEEEEEccCCCC
Q 024021 188 EPEMRAAWAQKIKDFLKPD--GELITLMFPISDH 219 (274)
Q Consensus 188 ~~~~~~~~l~~~~~~L~pg--G~~~~~~~~~~~~ 219 (274)
+++....+|+++++.|+|| |+|++.++-..+.
T Consensus 172 ~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~ 205 (241)
T PF00891_consen 172 SDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDD 205 (241)
T ss_dssp -HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSS
T ss_pred chHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCC
Confidence 9999999999999999999 9999988766544
No 108
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.45 E-value=5.6e-13 Score=104.00 Aligned_cols=136 Identities=21% Similarity=0.287 Sum_probs=103.6
Q ss_pred CeEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceE-EEEcccCCC--CCCCCeeEEEeccccc
Q 024021 110 GRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVS-FLKADFFTW--CPTELFDLIFDYTFFC 185 (274)
Q Consensus 110 ~~vLDiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~-~~~~d~~~~--~~~~~~D~v~~~~~~~ 185 (274)
..|||+|||||.+-.+.-- ++.+|+++|.++.|-+.+.+.+.+.. ..++. |+.++..+. .++.+||.|++-.+++
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k-~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLC 156 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKK-PLQVERFVVADGENLPQLADGSYDTVVCTLVLC 156 (252)
T ss_pred cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhcc-CcceEEEEeechhcCcccccCCeeeEEEEEEEe
Confidence 4789999999999877753 88899999999999999999887763 34566 999999884 4788999999999998
Q ss_pred ccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCC---------CCCCcc------cCHHHHHHHHhcCCCcEEEEee
Q 024021 186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHV---------GGPPYK------VSVSDYEEVLQPMGFQAISIVD 248 (274)
Q Consensus 186 ~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~---------~~~~~~------~~~~~~~~~l~~~Gf~~~~~~~ 248 (274)
... +..+.+.++.++|+|||++++.++....-. ..+.++ .=..+..+.++++.|...+...
T Consensus 157 Sve--~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~v~ep~~~~~~dGC~ltrd~~e~Leda~f~~~~~kr 232 (252)
T KOG4300|consen 157 SVE--DPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQVAEPLWHLESDGCVLTRDTGELLEDAEFSIDSCKR 232 (252)
T ss_pred ccC--CHHHHHHHHHHhcCCCcEEEEEecccccchHHHHHHHHHhchhhheeccceEEehhHHHHhhhcccccchhhc
Confidence 774 446789999999999999999987664320 011001 0124566777777787766554
No 109
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.45 E-value=2.3e-12 Score=105.12 Aligned_cols=129 Identities=24% Similarity=0.213 Sum_probs=93.8
Q ss_pred chhHhhhcCCCCccCCC--ccHHHHH-HHhcC-CCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhc
Q 024021 77 GWEKCWEEGLTPWDIGQ--PAPIIVH-LHQSG-ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSS 152 (274)
Q Consensus 77 ~w~~~~~~~~~~~~~~~--~~~~~~~-~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~ 152 (274)
++...|.....+|..+. ..+.+.. ++... ..++.+|||+|||+|..+..+++...+++++|+++++++.+++++..
T Consensus 43 ~~~~ay~d~~~~~~~~~~~~~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~ 122 (212)
T PRK00312 43 FKHKAYENRALPIGCGQTISQPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQ 122 (212)
T ss_pred HHhcCccCCCccCCCCCeeCcHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHH
Confidence 34555655555554333 2333333 33333 34558999999999999988777656999999999999999999887
Q ss_pred CCCCcceEEEEcccCCCC-CCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021 153 LPNAKFVSFLKADFFTWC-PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (274)
Q Consensus 153 ~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 214 (274)
.+.. ++++..+|..+.. ..++||+|++...+.++ .+.+.+.|+|||.+++...
T Consensus 123 ~~~~-~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~~--------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 123 LGLH-NVSVRHGDGWKGWPAYAPFDRILVTAAAPEI--------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred CCCC-ceEEEECCcccCCCcCCCcCEEEEccCchhh--------hHHHHHhcCCCcEEEEEEc
Confidence 6653 5999999987643 34689999988766544 2457789999999988764
No 110
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=3.4e-12 Score=106.41 Aligned_cols=124 Identities=19% Similarity=0.207 Sum_probs=95.6
Q ss_pred ccCCCccHHHHHHHhcCCC-CCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcc
Q 024021 89 WDIGQPAPIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD 165 (274)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~-~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d 165 (274)
|+......--.-+++.+.. ...+|||+|||.|.++..+++ +..+++.+|.+..+++.|+.+...++..+ ..+...|
T Consensus 138 FS~~~lD~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~-~~v~~s~ 216 (300)
T COG2813 138 FSRDKLDKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVEN-TEVWASN 216 (300)
T ss_pred CcCCCcChHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCc-cEEEEec
Confidence 4444444434444444432 245999999999999999988 55699999999999999999998887643 3778888
Q ss_pred cCCCCCCCCeeEEEecccccccC---hhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021 166 FFTWCPTELFDLIFDYTFFCAIE---PEMRAAWAQKIKDFLKPDGELITLMF 214 (274)
Q Consensus 166 ~~~~~~~~~~D~v~~~~~~~~~~---~~~~~~~l~~~~~~L~pgG~~~~~~~ 214 (274)
..+.... +||+|+++..|+.-- ...-.+++....+.|++||.+.++..
T Consensus 217 ~~~~v~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 217 LYEPVEG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred ccccccc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 8876555 899999999998631 22335889999999999999888875
No 111
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.40 E-value=7.6e-12 Score=101.59 Aligned_cols=119 Identities=14% Similarity=0.157 Sum_probs=85.7
Q ss_pred CCCCeEEEEcCCcchhHHHhhCC---CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC---------CCCCC
Q 024021 107 LPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---------CPTEL 174 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~---------~~~~~ 174 (274)
.++.+|||+|||+|.++..+++. +..|+++|+++. .. . .+++++++|+.+. ...++
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~---------~~--~-~~v~~i~~D~~~~~~~~~i~~~~~~~~ 117 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM---------DP--I-VGVDFLQGDFRDELVLKALLERVGDSK 117 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc---------cC--C-CCcEEEecCCCChHHHHHHHHHhCCCC
Confidence 45679999999999999988773 358999999881 11 1 3589999999873 34578
Q ss_pred eeEEEecccccccChh---------HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEE
Q 024021 175 FDLIFDYTFFCAIEPE---------MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAIS 245 (274)
Q Consensus 175 ~D~v~~~~~~~~~~~~---------~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 245 (274)
||+|+++.+.+..... ....+++.+.++|+|||.+++..+... ...++...++. .|..+.
T Consensus 118 ~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~----------~~~~~l~~l~~-~f~~v~ 186 (209)
T PRK11188 118 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGE----------GFDEYLREIRS-LFTKVK 186 (209)
T ss_pred CCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCc----------CHHHHHHHHHh-CceEEE
Confidence 9999998765443211 124688999999999999999775442 34455444444 687777
Q ss_pred Eee
Q 024021 246 IVD 248 (274)
Q Consensus 246 ~~~ 248 (274)
+..
T Consensus 187 ~~K 189 (209)
T PRK11188 187 VRK 189 (209)
T ss_pred EEC
Confidence 643
No 112
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.39 E-value=7.7e-12 Score=100.79 Aligned_cols=124 Identities=16% Similarity=0.131 Sum_probs=89.1
Q ss_pred CCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC--CCCCCeeEEEecc
Q 024021 107 LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--CPTELFDLIFDYT 182 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~D~v~~~~ 182 (274)
.++.+|||+|||+|.++..+++ ++.+|+++|+++.+++.+++++...+. .+++++.+|+.+. .....+|.++...
T Consensus 39 ~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~-~~v~~~~~d~~~~~~~~~~~~d~v~~~~ 117 (196)
T PRK07402 39 EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGV-KNVEVIEGSAPECLAQLAPAPDRVCIEG 117 (196)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CCeEEEECchHHHHhhCCCCCCEEEEEC
Confidence 3557999999999999988875 567999999999999999999877665 4699999988652 1123457665422
Q ss_pred cccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHh---cCCCcEEEEe
Q 024021 183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQ---PMGFQAISIV 247 (274)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~Gf~~~~~~ 247 (274)
. .....+++.+.++|+|||.+++...... +..++.+.++ ..+++++++.
T Consensus 118 ~------~~~~~~l~~~~~~LkpgG~li~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 169 (196)
T PRK07402 118 G------RPIKEILQAVWQYLKPGGRLVATASSLE----------GLYAISEGLAQLQARNIEVVQAA 169 (196)
T ss_pred C------cCHHHHHHHHHHhcCCCeEEEEEeecHH----------HHHHHHHHHHhcCCCCceEEEEE
Confidence 1 2345789999999999999998764221 2233444454 4466766654
No 113
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=2.9e-11 Score=93.69 Aligned_cols=131 Identities=19% Similarity=0.155 Sum_probs=98.0
Q ss_pred CCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccc
Q 024021 106 ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF 184 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~ 184 (274)
+..+.+|+|+|||||.+++..+-.|+ +|+++|+++++++.++++.... ..++.|+.+|+.+.. .++|.|+.+..|
T Consensus 43 ~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l--~g~v~f~~~dv~~~~--~~~dtvimNPPF 118 (198)
T COG2263 43 DLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEEL--LGDVEFVVADVSDFR--GKFDTVIMNPPF 118 (198)
T ss_pred CcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhh--CCceEEEEcchhhcC--CccceEEECCCC
Confidence 56678999999999999999988786 8999999999999999999873 367999999998654 568999999998
Q ss_pred cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecccccC
Q 024021 185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIG 254 (274)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~ 254 (274)
...-...-..++....+.. -.++...... +.+.+.+..+.+|+++........+++
T Consensus 119 G~~~rhaDr~Fl~~Ale~s---~vVYsiH~a~-----------~~~f~~~~~~~~G~~v~~~~~~~~~iP 174 (198)
T COG2263 119 GSQRRHADRPFLLKALEIS---DVVYSIHKAG-----------SRDFVEKFAADLGGTVTHIERARFPIP 174 (198)
T ss_pred ccccccCCHHHHHHHHHhh---heEEEeeccc-----------cHHHHHHHHHhcCCeEEEEEEEEEecC
Confidence 7652111124445554433 3333333211 678899999999999887765554444
No 114
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.38 E-value=5.2e-12 Score=119.70 Aligned_cols=132 Identities=22% Similarity=0.163 Sum_probs=102.9
Q ss_pred CCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCC-cceEEEEcccCCCC--CCCCeeEEEeccc
Q 024021 108 PKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNA-KFVSFLKADFFTWC--PTELFDLIFDYTF 183 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~--~~~~~D~v~~~~~ 183 (274)
++.+|||+|||+|.++..++..|+ +|+++|+|+.+++.|++++..+++. ++++++.+|+.+.. ..++||+|++...
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 468999999999999999998776 6999999999999999999988875 58999999987732 2468999999765
Q ss_pred ccccC---------hhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024021 184 FCAIE---------PEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNK 250 (274)
Q Consensus 184 ~~~~~---------~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 250 (274)
...-. ......++..+.++|+|||.+++..... . .....+.++++|+.+..+....
T Consensus 618 ~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~---------~--~~~~~~~~~~~g~~~~~i~~~~ 682 (702)
T PRK11783 618 TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKR---------G--FKMDEEGLAKLGLKAEEITAKT 682 (702)
T ss_pred CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCc---------c--CChhHHHHHhCCCeEEEEecCC
Confidence 32111 1234577888999999999988865322 1 1223778888999998887644
No 115
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.37 E-value=8.1e-12 Score=110.40 Aligned_cols=131 Identities=18% Similarity=0.095 Sum_probs=96.4
Q ss_pred CCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCC-cceEEEEcccCCCC-----CCCCeeEEEe
Q 024021 108 PKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNA-KFVSFLKADFFTWC-----PTELFDLIFD 180 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~-----~~~~~D~v~~ 180 (274)
++.+|||+|||+|.++..++..++ +|+++|+++.+++.|++++..+++. .+++++.+|+++.. ..++||+|++
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil 299 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence 468999999999999987666555 9999999999999999999988775 47999999998732 2457999999
Q ss_pred cccccccCh-------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHh----cCCCcEEEEe
Q 024021 181 YTFFCAIEP-------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQ----PMGFQAISIV 247 (274)
Q Consensus 181 ~~~~~~~~~-------~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~Gf~~~~~~ 247 (274)
..+...-.. .....++....++|+|||.+++...+. +.+.+++.+++. .+|-++..+.
T Consensus 300 DPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~---------~~~~~~f~~~v~~aa~~~~~~~~~l~ 368 (396)
T PRK15128 300 DPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSG---------LMTSDLFQKIIADAAIDAGRDVQFIE 368 (396)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCC---------cCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 877533222 123456677889999999999876433 234555555554 4454444443
No 116
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.37 E-value=5.6e-12 Score=104.11 Aligned_cols=102 Identities=17% Similarity=0.239 Sum_probs=84.0
Q ss_pred CCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-------CCCCee
Q 024021 107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-------PTELFD 176 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-------~~~~~D 176 (274)
.++.+|||+|||+|+.+..++. .+.+++++|+++++++.|++++...++.++++++.+|+.+.. +.++||
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD 146 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFD 146 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCC
Confidence 3468999999999998887765 356999999999999999999999988889999999997731 246899
Q ss_pred EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021 177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 177 ~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 213 (274)
+|+... +.+....+++.+.+.|+|||.+++..
T Consensus 147 ~VfiDa-----~k~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 147 FAFVDA-----DKPNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred EEEECC-----CHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 999532 23455678899999999999988743
No 117
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.36 E-value=4.3e-12 Score=104.56 Aligned_cols=126 Identities=25% Similarity=0.225 Sum_probs=96.5
Q ss_pred CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CC---CCCCeeEE
Q 024021 106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WC---PTELFDLI 178 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~---~~~~~D~v 178 (274)
..|+.+|||.|+|+|.++..|++ +..+|+.+|+.++.++.|++++...++.+++++...|+.+ .+ ....+|.|
T Consensus 38 i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~Dav 117 (247)
T PF08704_consen 38 IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDFDAV 117 (247)
T ss_dssp --TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSEEEE
T ss_pred CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCcccEE
Confidence 45778999999999999999987 5679999999999999999999999998899999999975 22 23579999
Q ss_pred EecccccccChhHHHHHHHHHHhcc-cCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024021 179 FDYTFFCAIEPEMRAAWAQKIKDFL-KPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD 248 (274)
Q Consensus 179 ~~~~~~~~~~~~~~~~~l~~~~~~L-~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 248 (274)
+.. + +....++..+.++| ++||++++...... ......+.|++.||..+++.+
T Consensus 118 fLD-----l--p~Pw~~i~~~~~~L~~~gG~i~~fsP~ie----------Qv~~~~~~L~~~gf~~i~~~E 171 (247)
T PF08704_consen 118 FLD-----L--PDPWEAIPHAKRALKKPGGRICCFSPCIE----------QVQKTVEALREHGFTDIETVE 171 (247)
T ss_dssp EEE-----S--SSGGGGHHHHHHHE-EEEEEEEEEESSHH----------HHHHHHHHHHHTTEEEEEEEE
T ss_pred EEe-----C--CCHHHHHHHHHHHHhcCCceEEEECCCHH----------HHHHHHHHHHHCCCeeeEEEE
Confidence 942 2 23356789999999 89999988773332 456677788889998877544
No 118
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.36 E-value=1.1e-11 Score=108.13 Aligned_cols=105 Identities=19% Similarity=0.206 Sum_probs=85.8
Q ss_pred CCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---CCCCCCeeEEEec
Q 024021 107 LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPTELFDLIFDY 181 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~D~v~~~ 181 (274)
..+..+||||||+|..+..++. ++..++|+|+++.+++.+.+++...++ .++.++.+|+.. ..+++++|.|+++
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL-~NV~~i~~DA~~ll~~~~~~s~D~I~ln 199 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNL-KNLLIINYDARLLLELLPSNSVEKIFVH 199 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHhhhhCCCCceeEEEEe
Confidence 3446999999999999999987 577999999999999999999887766 469999999864 4567899999987
Q ss_pred ccccccChh-H----HHHHHHHHHhcccCCcEEEEEE
Q 024021 182 TFFCAIEPE-M----RAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 182 ~~~~~~~~~-~----~~~~l~~~~~~L~pgG~~~~~~ 213 (274)
....+ +.. . ...+++.+.++|+|||.+.+.+
T Consensus 200 FPdPW-~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 200 FPVPW-DKKPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred CCCCc-cccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 65432 211 1 1578999999999999998866
No 119
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.34 E-value=5.3e-12 Score=101.95 Aligned_cols=107 Identities=24% Similarity=0.293 Sum_probs=80.8
Q ss_pred HHHHhcC-CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCC
Q 024021 99 VHLHQSG-ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTE 173 (274)
Q Consensus 99 ~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~ 173 (274)
..+++.+ ..++.+|||||||+|+.+..++. +...|+++|.++..++.|++++...+. .++.++.+|... .....
T Consensus 62 a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~-~nv~~~~gdg~~g~~~~a 140 (209)
T PF01135_consen 62 ARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI-DNVEVVVGDGSEGWPEEA 140 (209)
T ss_dssp HHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT-HSEEEEES-GGGTTGGG-
T ss_pred HHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc-CceeEEEcchhhccccCC
Confidence 3444444 45668999999999999988877 345899999999999999999987654 479999999877 34456
Q ss_pred CeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021 174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (274)
Q Consensus 174 ~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 214 (274)
+||.|++......+| ..+.+.|++||++++...
T Consensus 141 pfD~I~v~~a~~~ip--------~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 141 PFDRIIVTAAVPEIP--------EALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp SEEEEEESSBBSS----------HHHHHTEEEEEEEEEEES
T ss_pred CcCEEEEeeccchHH--------HHHHHhcCCCcEEEEEEc
Confidence 899999988877664 347778999999998764
No 120
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.34 E-value=2.5e-11 Score=86.43 Aligned_cols=100 Identities=34% Similarity=0.454 Sum_probs=82.5
Q ss_pred eEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC--CCCCeeEEEeccccccc
Q 024021 111 RALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--PTELFDLIFDYTFFCAI 187 (274)
Q Consensus 111 ~vLDiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~D~v~~~~~~~~~ 187 (274)
+++|+|||+|..+..+++ .+.+++++|.++.++..+++..... ...++.++.+|+.+.. ..++||+|++..+++++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAAL-LADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcc-cccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 589999999999999987 6679999999999999998543322 2356899999998844 45789999999998874
Q ss_pred ChhHHHHHHHHHHhcccCCcEEEEE
Q 024021 188 EPEMRAAWAQKIKDFLKPDGELITL 212 (274)
Q Consensus 188 ~~~~~~~~l~~~~~~L~pgG~~~~~ 212 (274)
......+++.+.+.++|||.+++.
T Consensus 80 -~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 -VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred -hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 356678899999999999998875
No 121
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.33 E-value=6.5e-12 Score=97.78 Aligned_cols=114 Identities=17% Similarity=0.123 Sum_probs=88.0
Q ss_pred EEEeCChHHHHHHHHHhhcC--CCCcceEEEEcccCC-CCCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEE
Q 024021 134 VGLEISDIAIKKAEELSSSL--PNAKFVSFLKADFFT-WCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI 210 (274)
Q Consensus 134 ~~vD~~~~~~~~a~~~~~~~--~~~~~~~~~~~d~~~-~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~ 210 (274)
+|+|+|++|++.|+++.... +...+++++++|+.+ +.++++||+|++..++++++ +...++++++++|||||.++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~--d~~~~l~ei~rvLkpGG~l~ 78 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVV--DRLRAMKEMYRVLKPGSRVS 78 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCC--CHHHHHHHHHHHcCcCeEEE
Confidence 48999999999998776432 223579999999988 44566899999999999885 44688999999999999999
Q ss_pred EEEccCCCCC------------C--------C--C---------CcccCHHHHHHHHhcCCCcEEEEeec
Q 024021 211 TLMFPISDHV------------G--------G--P---------PYKVSVSDYEEVLQPMGFQAISIVDN 249 (274)
Q Consensus 211 ~~~~~~~~~~------------~--------~--~---------~~~~~~~~~~~~l~~~Gf~~~~~~~~ 249 (274)
+.++...... . + . ....+.+++.++++++||+.+.....
T Consensus 79 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~ 148 (160)
T PLN02232 79 ILDFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEI 148 (160)
T ss_pred EEECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEEC
Confidence 9888654220 0 0 0 11248899999999999998866543
No 122
>PHA03412 putative methyltransferase; Provisional
Probab=99.33 E-value=3.3e-11 Score=97.75 Aligned_cols=129 Identities=19% Similarity=0.218 Sum_probs=90.9
Q ss_pred CCCeEEEEcCCcchhHHHhhC-----CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecc
Q 024021 108 PKGRALVPGCGTGYDVVAMAS-----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYT 182 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~-----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~ 182 (274)
.+.+|||+|||+|.++..+++ ...+|+++|+++.+++.|+++. .++.++.+|+......++||+|+++.
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~------~~~~~~~~D~~~~~~~~~FDlIIsNP 122 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV------PEATWINADALTTEFDTLFDMAISNP 122 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc------cCCEEEEcchhcccccCCccEEEECC
Confidence 467999999999999988765 2459999999999999999886 34789999998754456899999998
Q ss_pred cccccCh----------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcc-----cCHHHHHHHHhcCCCcE
Q 024021 183 FFCAIEP----------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYK-----VSVSDYEEVLQPMGFQA 243 (274)
Q Consensus 183 ~~~~~~~----------~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~Gf~~ 243 (274)
.+..... .....++++..+++++|+. ++-.......-.+.++. .+-..+.++.++.|...
T Consensus 123 PY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-ILP~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (241)
T PHA03412 123 PFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF-IIPQMSANFRYSGTHYFRQDESTTSSKCKKFLDETGLEM 197 (241)
T ss_pred CCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE-EeCcccccCcccCccceeeccCcccHHHHHHHHhcCeee
Confidence 8874321 1235688888886666665 44222221111122211 25577788888888665
No 123
>PLN02672 methionine S-methyltransferase
Probab=99.33 E-value=3.7e-11 Score=116.48 Aligned_cols=131 Identities=21% Similarity=0.213 Sum_probs=100.1
Q ss_pred CCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCC---------------CcceEEEEcccCCCCC
Q 024021 109 KGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPN---------------AKFVSFLKADFFTWCP 171 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~---------------~~~~~~~~~d~~~~~~ 171 (274)
+.+|||+|||+|..+..+++ +..+++++|+|+.+++.|++|...+++ .++++|+.+|+.+...
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 46899999999999999987 446999999999999999999976532 2579999999988553
Q ss_pred C--CCeeEEEecccccc------cCh------------------------------hHHHHHHHHHHhcccCCcEEEEEE
Q 024021 172 T--ELFDLIFDYTFFCA------IEP------------------------------EMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 172 ~--~~~D~v~~~~~~~~------~~~------------------------------~~~~~~l~~~~~~L~pgG~~~~~~ 213 (274)
. .+||+|+++..+-. +++ +....++....++|+|||.+++..
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 3 36999999877431 111 112567788889999999888755
Q ss_pred ccCCCCCCCCCcccCHHHHH-HHHhcCCCcEEEEeecc
Q 024021 214 FPISDHVGGPPYKVSVSDYE-EVLQPMGFQAISIVDNK 250 (274)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~-~~l~~~Gf~~~~~~~~~ 250 (274)
... ..+.+. ++++..||..+.+....
T Consensus 279 G~~-----------q~~~v~~~l~~~~gf~~~~~~~~~ 305 (1082)
T PLN02672 279 GGR-----------PGQAVCERLFERRGFRITKLWQTK 305 (1082)
T ss_pred Ccc-----------HHHHHHHHHHHHCCCCeeEEeeeh
Confidence 211 345677 69999999998876644
No 124
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.32 E-value=3.2e-11 Score=108.89 Aligned_cols=140 Identities=19% Similarity=0.163 Sum_probs=102.3
Q ss_pred CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----CCCCeeEEEec
Q 024021 107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----PTELFDLIFDY 181 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~D~v~~~ 181 (274)
.++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.|+++...++. .+++++.+|+.+.. ..++||+|+++
T Consensus 296 ~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~d 374 (443)
T PRK13168 296 QPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGL-DNVTFYHANLEEDFTDQPWALGGFDKVLLD 374 (443)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEeChHHhhhhhhhhcCCCCEEEEC
Confidence 3457999999999999999998888999999999999999999887765 46999999987532 23579999987
Q ss_pred ccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecccccCCccchhH
Q 024021 182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIGPRKGREK 261 (274)
Q Consensus 182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~ 261 (274)
.....+ ...++.+.+ ++|++++++.+.+. +...=...|.+.||++.++...+. ++.-+.-|+
T Consensus 375 PPr~g~-----~~~~~~l~~-~~~~~ivyvSCnp~-----------tlaRDl~~L~~~gY~l~~i~~~Dm-FP~T~HvE~ 436 (443)
T PRK13168 375 PPRAGA-----AEVMQALAK-LGPKRIVYVSCNPA-----------TLARDAGVLVEAGYRLKRAGMLDM-FPHTGHVES 436 (443)
T ss_pred cCCcCh-----HHHHHHHHh-cCCCeEEEEEeChH-----------HhhccHHHHhhCCcEEEEEEEecc-CCCCCcEEE
Confidence 765543 234555555 68999999987433 233333455677999999887653 222234555
Q ss_pred HHHh
Q 024021 262 LGRW 265 (274)
Q Consensus 262 ~~~~ 265 (274)
+.++
T Consensus 437 v~lL 440 (443)
T PRK13168 437 MALF 440 (443)
T ss_pred EEEE
Confidence 5444
No 125
>PRK04457 spermidine synthase; Provisional
Probab=99.32 E-value=1.3e-11 Score=103.55 Aligned_cols=108 Identities=18% Similarity=0.173 Sum_probs=83.7
Q ss_pred CCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC--CCCCCeeEEEeccc
Q 024021 108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--CPTELFDLIFDYTF 183 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~D~v~~~~~ 183 (274)
++.+|||+|||+|..+..+++ ++.+++++|+++++++.|++++...+..++++++.+|..+. ...++||+|++...
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~~ 145 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDGF 145 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeCC
Confidence 457899999999999998876 56799999999999999999986554446899999998762 22357999997532
Q ss_pred cc-ccChh-HHHHHHHHHHhcccCCcEEEEEEcc
Q 024021 184 FC-AIEPE-MRAAWAQKIKDFLKPDGELITLMFP 215 (274)
Q Consensus 184 ~~-~~~~~-~~~~~l~~~~~~L~pgG~~~~~~~~ 215 (274)
-. ..+.. ....+++.+.+.|+|||++++..+.
T Consensus 146 ~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~ 179 (262)
T PRK04457 146 DGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWS 179 (262)
T ss_pred CCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCC
Confidence 11 12211 2368899999999999999986543
No 126
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=99.32 E-value=7e-11 Score=97.54 Aligned_cols=140 Identities=19% Similarity=0.237 Sum_probs=111.4
Q ss_pred CCCeEEEEcCCcchhHHHhhC--CC--CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC----CCCCCeeEEE
Q 024021 108 PKGRALVPGCGTGYDVVAMAS--PE--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW----CPTELFDLIF 179 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~--~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~D~v~ 179 (274)
.+-+||||.||+|........ +. .+|...|+++..++..++.+...++.+.++|.++|+++. .....+|+++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~i 214 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAI 214 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEE
Confidence 346999999999999887765 32 489999999999999999999999988779999999982 2234579999
Q ss_pred ecccccccChh-HHHHHHHHHHhcccCCcEEEEEEcc--CC---------CCCCCCCc---ccCHHHHHHHHhcCCCcEE
Q 024021 180 DYTFFCAIEPE-MRAAWAQKIKDFLKPDGELITLMFP--IS---------DHVGGPPY---KVSVSDYEEVLQPMGFQAI 244 (274)
Q Consensus 180 ~~~~~~~~~~~-~~~~~l~~~~~~L~pgG~~~~~~~~--~~---------~~~~~~~~---~~~~~~~~~~l~~~Gf~~~ 244 (274)
.++.++.+++. .....+..+.+++.|||+++.+..+ +. .+..|.++ .-+..|+.++++.+||+.+
T Consensus 215 VsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~aGF~K~ 294 (311)
T PF12147_consen 215 VSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAAGFEKI 294 (311)
T ss_pred EecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHcCCchh
Confidence 99999999874 4566789999999999999987632 21 11233333 3489999999999999965
Q ss_pred EEe
Q 024021 245 SIV 247 (274)
Q Consensus 245 ~~~ 247 (274)
...
T Consensus 295 ~q~ 297 (311)
T PF12147_consen 295 DQR 297 (311)
T ss_pred hhe
Confidence 543
No 127
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.31 E-value=1.7e-11 Score=105.68 Aligned_cols=144 Identities=22% Similarity=0.292 Sum_probs=100.4
Q ss_pred CCCeEEEEcCCcchhHHHhhCC-CCeEEEEeCChHHHHHHHHHhhc---------CCCCcceEEEEcccCC-----CCCC
Q 024021 108 PKGRALVPGCGTGYDVVAMASP-ERYVVGLEISDIAIKKAEELSSS---------LPNAKFVSFLKADFFT-----WCPT 172 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~---------~~~~~~~~~~~~d~~~-----~~~~ 172 (274)
++.+|||+|||.|+.+.-.... -..++|+|++...++.|+++... ....-...|+.+|.+. ..++
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 5689999999999988777664 45999999999999999999821 1011246778888875 1233
Q ss_pred --CCeeEEEeccccccc--ChhHHHHHHHHHHhcccCCcEEEEEEccCCC--------------C-------------C-
Q 024021 173 --ELFDLIFDYTFFCAI--EPEMRAAWAQKIKDFLKPDGELITLMFPISD--------------H-------------V- 220 (274)
Q Consensus 173 --~~~D~v~~~~~~~~~--~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~--------------~-------------~- 220 (274)
.+||+|-|...+|+. +.+....++..+.+.|+|||+++.++..... . .
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i~~~l~~~~~~~~~~~~gN~~y~I~f~~~~ 221 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSDEIVKRLREKKSNSEKKKFGNSVYSIEFDSDD 221 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHCCHHC-EEECCCSCSETSSEEEEESCCS
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHHHHHHHHhhcccccccccCCccEEEEecccC
Confidence 489999999999996 4456678999999999999999986643210 0 0
Q ss_pred C----C--------------CCcccCHHHHHHHHhcCCCcEEEEeeccc
Q 024021 221 G----G--------------PPYKVSVSDYEEVLQPMGFQAISIVDNKL 251 (274)
Q Consensus 221 ~----~--------------~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~ 251 (274)
. | +.|....+.+.+++++.|++.+.......
T Consensus 222 ~~~~fG~~Y~F~L~~~v~~~~EYlV~~~~~~~la~eyGLeLV~~~~F~e 270 (331)
T PF03291_consen 222 FFPPFGAKYDFYLEDAVDDCPEYLVPFDFFVKLAKEYGLELVEKKNFHE 270 (331)
T ss_dssp S--CTTEEEEEEETTCSSCEEEE---HHHHHHHHHHTTEEEEEEEEHHH
T ss_pred CCCCCCcEEEEEecCcCCCCceEEeeHHHHHHHHHHcCCEEEEeCChHH
Confidence 0 1 11224688999999999999998765443
No 128
>PLN02476 O-methyltransferase
Probab=99.31 E-value=5e-11 Score=99.78 Aligned_cols=102 Identities=16% Similarity=0.148 Sum_probs=85.7
Q ss_pred CCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-------CCCee
Q 024021 107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-------TELFD 176 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-------~~~~D 176 (274)
.++.+|||+||++|+.+.+++. .+.+++++|.+++..+.|++++...++.++++++.+|+.+..+ .++||
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD 196 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYD 196 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCC
Confidence 4468999999999999999987 3568999999999999999999999998899999999977221 35799
Q ss_pred EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021 177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 177 ~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 213 (274)
+|+.-. +......+++.+.++|+|||.+++-.
T Consensus 197 ~VFIDa-----~K~~Y~~y~e~~l~lL~~GGvIV~DN 228 (278)
T PLN02476 197 FAFVDA-----DKRMYQDYFELLLQLVRVGGVIVMDN 228 (278)
T ss_pred EEEECC-----CHHHHHHHHHHHHHhcCCCcEEEEec
Confidence 999432 23566788999999999999988743
No 129
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.30 E-value=2.9e-11 Score=97.42 Aligned_cols=119 Identities=18% Similarity=0.210 Sum_probs=93.2
Q ss_pred CccCCCccHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhC--C-CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEE-
Q 024021 88 PWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMAS--P-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLK- 163 (274)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~--~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~- 163 (274)
+.........+..++. ...+++|||+|++.|+.+++++. + ..+++.+|++++....|++++...+..+++..+.
T Consensus 41 pi~~~e~g~~L~~L~~--~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~ 118 (219)
T COG4122 41 PIIDPETGALLRLLAR--LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLG 118 (219)
T ss_pred CCCChhHHHHHHHHHH--hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEec
Confidence 3333333444444544 34568999999999999999987 3 5699999999999999999999999988899988
Q ss_pred cccCCC---CCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021 164 ADFFTW---CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 164 ~d~~~~---~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 213 (274)
+|..+. ...++||+||.- .+....+.+++.+.++|+|||.+++-.
T Consensus 119 gdal~~l~~~~~~~fDliFID-----adK~~yp~~le~~~~lLr~GGliv~DN 166 (219)
T COG4122 119 GDALDVLSRLLDGSFDLVFID-----ADKADYPEYLERALPLLRPGGLIVADN 166 (219)
T ss_pred CcHHHHHHhccCCCccEEEEe-----CChhhCHHHHHHHHHHhCCCcEEEEee
Confidence 587762 235789999932 234566789999999999999998854
No 130
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.28 E-value=9.1e-11 Score=101.35 Aligned_cols=139 Identities=20% Similarity=0.154 Sum_probs=99.3
Q ss_pred CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC--CCCCeeEEEecccc
Q 024021 107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--PTELFDLIFDYTFF 184 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~D~v~~~~~~ 184 (274)
.++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.|+++...++. .+++|+.+|+.+.. ..+.||+|++...-
T Consensus 172 ~~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr 250 (315)
T PRK03522 172 LPPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFATAQGEVPDLVLVNPPR 250 (315)
T ss_pred cCCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHHhcCCCCeEEEECCCC
Confidence 3468999999999999999999889999999999999999999988876 57999999997632 23579999988664
Q ss_pred cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecccccCCccchhHHHH
Q 024021 185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIGPRKGREKLGR 264 (274)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~~~~ 264 (274)
..+. ..+++.+ ..++|++++++.+.+.. -..++..+ .||++..+...+. ++.-+..|++.+
T Consensus 251 ~G~~----~~~~~~l-~~~~~~~ivyvsc~p~t----------~~rd~~~l---~~y~~~~~~~~Dm-FP~T~HvE~v~~ 311 (315)
T PRK03522 251 RGIG----KELCDYL-SQMAPRFILYSSCNAQT----------MAKDLAHL---PGYRIERVQLFDM-FPHTAHYEVLTL 311 (315)
T ss_pred CCcc----HHHHHHH-HHcCCCeEEEEECCccc----------chhHHhhc---cCcEEEEEEEecc-CCCCCeEEEEEE
Confidence 3332 2333333 33678888888774332 12344333 5999998877543 222234555444
Q ss_pred h
Q 024021 265 W 265 (274)
Q Consensus 265 ~ 265 (274)
+
T Consensus 312 l 312 (315)
T PRK03522 312 L 312 (315)
T ss_pred E
Confidence 3
No 131
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.28 E-value=1e-10 Score=105.64 Aligned_cols=132 Identities=20% Similarity=0.230 Sum_probs=97.6
Q ss_pred CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecc
Q 024021 106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYT 182 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~ 182 (274)
..++.+|||+|||+|..+..+++ .+.+|+++|+++.+++.+++++...+. .+++++.+|.....+.++||+|++..
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~-~~v~~~~~Da~~~~~~~~fD~Vl~D~ 326 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI-TIIETIEGDARSFSPEEQPDAILLDA 326 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC-CeEEEEeCcccccccCCCCCEEEEcC
Confidence 34567999999999998887765 356999999999999999999988776 36999999998865667899999642
Q ss_pred c------ccc-------cChh-------HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcC-CC
Q 024021 183 F------FCA-------IEPE-------MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPM-GF 241 (274)
Q Consensus 183 ~------~~~-------~~~~-------~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gf 241 (274)
. +.. +.++ ....++..+.+.|+|||+++..+.+.... -+.+.+..+++.+ +|
T Consensus 327 Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~-------Ene~~v~~~l~~~~~~ 399 (445)
T PRK14904 327 PCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPE-------ENELQIEAFLQRHPEF 399 (445)
T ss_pred CCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChh-------hHHHHHHHHHHhCCCC
Confidence 2 111 1111 12468999999999999999987655311 1345667777776 46
Q ss_pred cEEE
Q 024021 242 QAIS 245 (274)
Q Consensus 242 ~~~~ 245 (274)
..+.
T Consensus 400 ~~~~ 403 (445)
T PRK14904 400 SAEP 403 (445)
T ss_pred EEec
Confidence 6543
No 132
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.28 E-value=9.1e-11 Score=93.10 Aligned_cols=138 Identities=20% Similarity=0.133 Sum_probs=103.8
Q ss_pred eEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-C--------CCCCeeEEE
Q 024021 111 RALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-C--------PTELFDLIF 179 (274)
Q Consensus 111 ~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~--------~~~~~D~v~ 179 (274)
+|||||||||..+.++++ +..+..-.|.++.............+..+-..-+..|+... . ..+.||.|+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~ 107 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF 107 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence 599999999999999988 77899999999998777776665554433333455666652 1 245899999
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC---------------CCCCCcc-cCHHHHHHHHhcCCCcE
Q 024021 180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH---------------VGGPPYK-VSVSDYEEVLQPMGFQA 243 (274)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~---------------~~~~~~~-~~~~~~~~~l~~~Gf~~ 243 (274)
+.+++|..+-.....++..+.++|++||.+++.-.-..+. ...+.+. -+.+++.++.+++|+..
T Consensus 108 ~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL~l 187 (204)
T PF06080_consen 108 CINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHGLEL 187 (204)
T ss_pred ehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCCCcc
Confidence 9999999888888999999999999999998865322221 1122222 36789999999999997
Q ss_pred EEEee
Q 024021 244 ISIVD 248 (274)
Q Consensus 244 ~~~~~ 248 (274)
++..+
T Consensus 188 ~~~~~ 192 (204)
T PF06080_consen 188 EEDID 192 (204)
T ss_pred Ccccc
Confidence 66544
No 133
>PRK00811 spermidine synthase; Provisional
Probab=99.27 E-value=5.6e-11 Score=100.97 Aligned_cols=106 Identities=17% Similarity=0.210 Sum_probs=81.9
Q ss_pred CCCeEEEEcCCcchhHHHhhCC-C-CeEEEEeCChHHHHHHHHHhhcCC----CCcceEEEEcccCCCC--CCCCeeEEE
Q 024021 108 PKGRALVPGCGTGYDVVAMASP-E-RYVVGLEISDIAIKKAEELSSSLP----NAKFVSFLKADFFTWC--PTELFDLIF 179 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~~-~-~~v~~vD~~~~~~~~a~~~~~~~~----~~~~~~~~~~d~~~~~--~~~~~D~v~ 179 (274)
.+.+||++|||+|..+..+++. + .+|+++|+++.+++.|++.++... ..++++++.+|..... ..++||+|+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 155 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII 155 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence 4579999999999999988773 4 489999999999999999876421 1468999999988732 356899999
Q ss_pred ecccccccChh--HHHHHHHHHHhcccCCcEEEEEE
Q 024021 180 DYTFFCAIEPE--MRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 180 ~~~~~~~~~~~--~~~~~l~~~~~~L~pgG~~~~~~ 213 (274)
+...-...+.. ....+++.+.+.|+|||++++..
T Consensus 156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 156 VDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred ECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 86432222222 23678899999999999988753
No 134
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.26 E-value=2.8e-11 Score=97.44 Aligned_cols=102 Identities=20% Similarity=0.217 Sum_probs=84.2
Q ss_pred CCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-------CCCCee
Q 024021 107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-------PTELFD 176 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-------~~~~~D 176 (274)
..+.+||||||++|+.+.++++ .+.+++.+|.+++..+.|++++...++.++++++.+|..+.. ..++||
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD 123 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD 123 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence 3568999999999999999986 467999999999999999999999988889999999997621 135799
Q ss_pred EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021 177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 177 ~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 213 (274)
+|+... +......+++.+.++|+|||.+++-.
T Consensus 124 ~VFiDa-----~K~~y~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 124 FVFIDA-----DKRNYLEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp EEEEES-----TGGGHHHHHHHHHHHEEEEEEEEEET
T ss_pred EEEEcc-----cccchhhHHHHHhhhccCCeEEEEcc
Confidence 999533 23455678899999999999998854
No 135
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=99.26 E-value=4.2e-11 Score=99.58 Aligned_cols=151 Identities=20% Similarity=0.259 Sum_probs=110.6
Q ss_pred HHhcCCCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCC-----CcceEEEEcccCC------
Q 024021 101 LHQSGALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPN-----AKFVSFLKADFFT------ 168 (274)
Q Consensus 101 ~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~-----~~~~~~~~~d~~~------ 168 (274)
++.....++..++|+|||.|+.++..-+.|. .++|+|++...++.|+++...-.. .-.+.|+.+|.+.
T Consensus 110 LI~~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~ 189 (389)
T KOG1975|consen 110 LINLYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDL 189 (389)
T ss_pred HHHHHhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHh
Confidence 4444456678899999999999988877666 899999999999999998764211 1137889999876
Q ss_pred C-CCCCCeeEEEeccccccc--ChhHHHHHHHHHHhcccCCcEEEEEEccCC----------------------------
Q 024021 169 W-CPTELFDLIFDYTFFCAI--EPEMRAAWAQKIKDFLKPDGELITLMFPIS---------------------------- 217 (274)
Q Consensus 169 ~-~~~~~~D~v~~~~~~~~~--~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~---------------------------- 217 (274)
. .++.+||+|-|..++|+. ..+..+.++..+.++|+|||+++-+.....
T Consensus 190 ~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~~e~~~~gNdiykv~y~~~~~ 269 (389)
T KOG1975|consen 190 LEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDVIIKRLRAGEVERFGNDIYKVTYEIEFQ 269 (389)
T ss_pred ccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHHHHHHHHhccchhhcceeeeEeeeeecc
Confidence 2 233449999999999985 345667899999999999999987553211
Q ss_pred ---C-CC-------------CCCCcccCHHHHHHHHhcCCCcEEEEeeccc
Q 024021 218 ---D-HV-------------GGPPYKVSVSDYEEVLQPMGFQAISIVDNKL 251 (274)
Q Consensus 218 ---~-~~-------------~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~ 251 (274)
+ .. ..|.|...-.-+..++++.|.+++.+.....
T Consensus 270 k~~~~p~fG~kY~F~LedaVdcPEylV~F~~l~~lae~y~LeLv~~k~F~d 320 (389)
T KOG1975|consen 270 KEFDVPPFGAKYRFHLEDAVDCPEYLVPFPTLVSLAEEYGLELVFVKPFAD 320 (389)
T ss_pred cccCCCCccceEEEEcccccCCcceeeehHHHHHHHHhcCcEEEEeccHHH
Confidence 0 01 1122334567888999999999988776443
No 136
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.26 E-value=2.4e-10 Score=102.75 Aligned_cols=131 Identities=18% Similarity=0.162 Sum_probs=96.6
Q ss_pred CCCCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC---CCCCeeEEEe
Q 024021 106 ALPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC---PTELFDLIFD 180 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~D~v~~ 180 (274)
..++.+|||+|||+|..+..+++. +.+|+++|+++.+++.++++....+. +++++.+|..+.. ..++||.|++
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~--~~~~~~~D~~~~~~~~~~~~fD~Vl~ 319 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL--KATVIVGDARDPAQWWDGQPFDRILL 319 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC--CeEEEEcCcccchhhcccCCCCEEEE
Confidence 345689999999999999988873 36999999999999999999988764 3789999997632 3467999997
Q ss_pred cccccc-------------cChh-------HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcC-
Q 024021 181 YTFFCA-------------IEPE-------MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPM- 239 (274)
Q Consensus 181 ~~~~~~-------------~~~~-------~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~- 239 (274)
...... ..+. ....++..+.+.|+|||.+++.+.+.... -+.+.+...++++
T Consensus 320 D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~-------Ene~~v~~~l~~~~ 392 (427)
T PRK10901 320 DAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPE-------ENEQQIKAFLARHP 392 (427)
T ss_pred CCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChh-------hCHHHHHHHHHhCC
Confidence 553221 0111 12478999999999999999877544211 1456777777776
Q ss_pred CCcEEE
Q 024021 240 GFQAIS 245 (274)
Q Consensus 240 Gf~~~~ 245 (274)
+|.++.
T Consensus 393 ~~~~~~ 398 (427)
T PRK10901 393 DAELLD 398 (427)
T ss_pred CCEEec
Confidence 566544
No 137
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.25 E-value=1.1e-10 Score=93.47 Aligned_cols=117 Identities=17% Similarity=0.304 Sum_probs=81.6
Q ss_pred CCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC---------CCCCC
Q 024021 107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---------CPTEL 174 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~---------~~~~~ 174 (274)
.++.+|||+|||+|.++..+++ ...+++++|+++.+ . ..+++++.+|+.+. .+.++
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~--------~----~~~i~~~~~d~~~~~~~~~l~~~~~~~~ 98 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK--------P----IENVDFIRGDFTDEEVLNKIRERVGDDK 98 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc--------c----CCCceEEEeeCCChhHHHHHHHHhCCCC
Confidence 4568999999999999988866 33489999999864 1 13578888888753 24567
Q ss_pred eeEEEeccccc---c--cCh----hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEE
Q 024021 175 FDLIFDYTFFC---A--IEP----EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAIS 245 (274)
Q Consensus 175 ~D~v~~~~~~~---~--~~~----~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 245 (274)
||+|++....+ . ++. +....++..+.++|+|||.+++..+... ...++...++.. |..+.
T Consensus 99 ~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~----------~~~~~l~~l~~~-~~~~~ 167 (188)
T TIGR00438 99 VDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGE----------EIDEYLNELRKL-FEKVK 167 (188)
T ss_pred ccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCc----------cHHHHHHHHHhh-hceEE
Confidence 99999865321 1 111 2236789999999999999998653321 455666666663 65444
Q ss_pred E
Q 024021 246 I 246 (274)
Q Consensus 246 ~ 246 (274)
+
T Consensus 168 ~ 168 (188)
T TIGR00438 168 V 168 (188)
T ss_pred E
Confidence 4
No 138
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=2.8e-10 Score=87.30 Aligned_cols=130 Identities=17% Similarity=0.283 Sum_probs=103.8
Q ss_pred CCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccc
Q 024021 109 KGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC 185 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~ 185 (274)
...++|||||+|..+.++++ ++..+.++|++|.+++..++.+..++ .+++.+..|+......++.|+++.+..+.
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~--~~~~~V~tdl~~~l~~~~VDvLvfNPPYV 121 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNR--VHIDVVRTDLLSGLRNESVDVLVFNPPYV 121 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcC--CccceeehhHHhhhccCCccEEEECCCcC
Confidence 57899999999999998887 45689999999999999999887775 45888999999855559999999987654
Q ss_pred ccChh-------------------HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEE
Q 024021 186 AIEPE-------------------MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISI 246 (274)
Q Consensus 186 ~~~~~-------------------~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 246 (274)
--+++ ..+.++..+-.+|.|.|.+++...... .++++.+.++..||.....
T Consensus 122 pt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N----------~p~ei~k~l~~~g~~~~~~ 191 (209)
T KOG3191|consen 122 PTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRAN----------KPKEILKILEKKGYGVRIA 191 (209)
T ss_pred cCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhc----------CHHHHHHHHhhcccceeEE
Confidence 32211 135667777788999999998775442 6889999999999998776
Q ss_pred eecc
Q 024021 247 VDNK 250 (274)
Q Consensus 247 ~~~~ 250 (274)
..+.
T Consensus 192 ~~Rk 195 (209)
T KOG3191|consen 192 MQRK 195 (209)
T ss_pred EEEe
Confidence 6544
No 139
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.24 E-value=1.1e-10 Score=100.39 Aligned_cols=105 Identities=23% Similarity=0.178 Sum_probs=79.9
Q ss_pred HHHhcCC-CCCCeEEEEcCCcchhHHHhhCC---CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCC
Q 024021 100 HLHQSGA-LPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTEL 174 (274)
Q Consensus 100 ~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~ 174 (274)
.+++... .++.+|||+|||+|.++..+++. ...|+++|+++++++.|+++....+. +++.++.+|..+. ....+
T Consensus 71 ~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-~nV~~i~gD~~~~~~~~~~ 149 (322)
T PRK13943 71 LFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI-ENVIFVCGDGYYGVPEFAP 149 (322)
T ss_pred HHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCChhhcccccCC
Confidence 3444333 35579999999999999988872 24799999999999999999877765 5699999998763 33357
Q ss_pred eeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021 175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 175 ~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 213 (274)
||+|++......+ ...+.+.|+|||.+++..
T Consensus 150 fD~Ii~~~g~~~i--------p~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 150 YDVIFVTVGVDEV--------PETWFTQLKEGGRVIVPI 180 (322)
T ss_pred ccEEEECCchHHh--------HHHHHHhcCCCCEEEEEe
Confidence 9999987554433 234678899999988754
No 140
>PRK01581 speE spermidine synthase; Validated
Probab=99.24 E-value=2.3e-10 Score=98.50 Aligned_cols=140 Identities=15% Similarity=0.120 Sum_probs=98.8
Q ss_pred CCCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHh--h---cCC-CCcceEEEEcccCCC--CCCCCee
Q 024021 107 LPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELS--S---SLP-NAKFVSFLKADFFTW--CPTELFD 176 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~--~---~~~-~~~~~~~~~~d~~~~--~~~~~~D 176 (274)
..+.+||++|||+|..+..+++. ..+|+++|+++++++.|++.. . ... ..++++++.+|..+. ...++||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 44579999999999999888873 359999999999999999721 1 111 247899999999873 3346799
Q ss_pred EEEeccccc---ccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCccc-CHHHHHHHHhcCCCcEEEEeecccc
Q 024021 177 LIFDYTFFC---AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKV-SVSDYEEVLQPMGFQAISIVDNKLA 252 (274)
Q Consensus 177 ~v~~~~~~~---~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~Gf~~~~~~~~~~~ 252 (274)
+|++...-. ....-....+++.+.+.|+|||++++..-+. .... ....+.+.++++|+.+.........
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp-------~~~~~~~~~i~~tL~~af~~v~~y~t~vPs 301 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSP-------ADAPLVYWSIGNTIEHAGLTVKSYHTIVPS 301 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCCh-------hhhHHHHHHHHHHHHHhCCceEEEEEecCC
Confidence 999874311 0111223678899999999999987764211 1110 1244788899999988877766544
Q ss_pred c
Q 024021 253 I 253 (274)
Q Consensus 253 ~ 253 (274)
+
T Consensus 302 y 302 (374)
T PRK01581 302 F 302 (374)
T ss_pred C
Confidence 4
No 141
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=99.23 E-value=3.9e-11 Score=101.45 Aligned_cols=104 Identities=19% Similarity=0.170 Sum_probs=89.0
Q ss_pred CCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEeccc
Q 024021 106 ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTF 183 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~~~ 183 (274)
...++.|||+|||||.+++..++.|+ +|+++|.|. +.+.|.+.+..+++.+.++++.+.+.+ ..|.+++|+|++-+.
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~-ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWM 136 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASS-IADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWM 136 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechH-HHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhh
Confidence 35678999999999999999999888 899999866 459999999999998899999999988 445689999999877
Q ss_pred cccc-ChhHHHHHHHHHHhcccCCcEEE
Q 024021 184 FCAI-EPEMRAAWAQKIKDFLKPDGELI 210 (274)
Q Consensus 184 ~~~~-~~~~~~~~l~~~~~~L~pgG~~~ 210 (274)
-+++ .+..+..++-.=.++|+|||.++
T Consensus 137 Gy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 137 GYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred hHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 5554 34677788888889999999876
No 142
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.23 E-value=1.4e-10 Score=102.36 Aligned_cols=138 Identities=18% Similarity=0.143 Sum_probs=100.2
Q ss_pred CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC--CCCeeEEEecccc
Q 024021 107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--TELFDLIFDYTFF 184 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~D~v~~~~~~ 184 (274)
.++.+|||+|||+|.++..++..+.+|+++|+++.+++.|+++...++. .+++|+.+|+.+... ..+||+|++....
T Consensus 232 ~~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~-~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr 310 (374)
T TIGR02085 232 IPVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGL-DNLSFAALDSAKFATAQMSAPELVLVNPPR 310 (374)
T ss_pred cCCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHHHHhcCCCCCEEEECCCC
Confidence 3457999999999999999998888999999999999999999988776 479999999976332 2469999988776
Q ss_pred cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecccccCCccchhHHHH
Q 024021 185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIGPRKGREKLGR 264 (274)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~~~~ 264 (274)
..+. ..+++.+.+ ++|++++++.+.+. +...=...| .||++..+...+. ++.-+.-|.+.+
T Consensus 311 ~G~~----~~~l~~l~~-~~p~~ivyvsc~p~-----------TlaRDl~~L--~gy~l~~~~~~Dm-FPqT~HvE~v~l 371 (374)
T TIGR02085 311 RGIG----KELCDYLSQ-MAPKFILYSSCNAQ-----------TMAKDIAEL--SGYQIERVQLFDM-FPHTSHYEVLTL 371 (374)
T ss_pred CCCc----HHHHHHHHh-cCCCeEEEEEeCHH-----------HHHHHHHHh--cCceEEEEEEecc-CCCCCcEEEEEE
Confidence 5443 344555544 78999999987332 222223334 6999998877543 222234444443
No 143
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.22 E-value=2.5e-10 Score=91.61 Aligned_cols=106 Identities=12% Similarity=0.072 Sum_probs=80.7
Q ss_pred CCCCeEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC--CCCCeeEEEeccc
Q 024021 107 LPKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--PTELFDLIFDYTF 183 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~D~v~~~~~ 183 (274)
.++.+|||+|||+|.++..++. ...+|+++|.++.+++.+++++...+. .+++++.+|+.+.. ..++||+|+++..
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~-~~v~~~~~D~~~~l~~~~~~fDlV~~DPP 130 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKA-GNARVVNTNALSFLAQPGTPHNVVFVDPP 130 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCC-CcEEEEEchHHHHHhhcCCCceEEEECCC
Confidence 3457999999999999986544 345999999999999999999887765 47999999997732 2346999999988
Q ss_pred ccccChhHHHHHHHHHHh--cccCCcEEEEEEccC
Q 024021 184 FCAIEPEMRAAWAQKIKD--FLKPDGELITLMFPI 216 (274)
Q Consensus 184 ~~~~~~~~~~~~l~~~~~--~L~pgG~~~~~~~~~ 216 (274)
+.. .....+++.+.. +|+|++++++.....
T Consensus 131 y~~---g~~~~~l~~l~~~~~l~~~~iv~ve~~~~ 162 (199)
T PRK10909 131 FRK---GLLEETINLLEDNGWLADEALIYVESEVE 162 (199)
T ss_pred CCC---ChHHHHHHHHHHCCCcCCCcEEEEEecCC
Confidence 543 233445565655 478999888876443
No 144
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.22 E-value=1.6e-10 Score=90.78 Aligned_cols=97 Identities=15% Similarity=0.110 Sum_probs=73.3
Q ss_pred CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-CCCCeeEEEeccccc
Q 024021 107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-PTELFDLIFDYTFFC 185 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~~~~ 185 (274)
.++.+|||+|||+|.++..+++.+.+++++|+++.+++.++++.... ++++++.+|+.+.. +...||.|+++..++
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~~---~~v~ii~~D~~~~~~~~~~~d~vi~n~Py~ 88 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAAA---DNLTVIHGDALKFDLPKLQPYKVVGNLPYN 88 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhccC---CCEEEEECchhcCCccccCCCEEEECCCcc
Confidence 34579999999999999999988889999999999999999987542 57999999999854 334699999887765
Q ss_pred ccChhHHHHHHHHHHhc--ccCCcEEEE
Q 024021 186 AIEPEMRAAWAQKIKDF--LKPDGELIT 211 (274)
Q Consensus 186 ~~~~~~~~~~l~~~~~~--L~pgG~~~~ 211 (274)
+..+ .+.++.+. +.++|.+++
T Consensus 89 -~~~~----~i~~~l~~~~~~~~~~l~~ 111 (169)
T smart00650 89 -ISTP----ILFKLLEEPPAFRDAVLMV 111 (169)
T ss_pred -cHHH----HHHHHHhcCCCcceEEEEE
Confidence 3223 33333332 335666655
No 145
>PRK03612 spermidine synthase; Provisional
Probab=99.22 E-value=1.3e-10 Score=106.75 Aligned_cols=133 Identities=20% Similarity=0.207 Sum_probs=94.5
Q ss_pred CCCCeEEEEcCCcchhHHHhhCC-C-CeEEEEeCChHHHHHHHHHh--hcC---C-CCcceEEEEcccCCC--CCCCCee
Q 024021 107 LPKGRALVPGCGTGYDVVAMASP-E-RYVVGLEISDIAIKKAEELS--SSL---P-NAKFVSFLKADFFTW--CPTELFD 176 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~~-~-~~v~~vD~~~~~~~~a~~~~--~~~---~-~~~~~~~~~~d~~~~--~~~~~~D 176 (274)
.++++|||+|||+|..+..+++. + .+++++|+++++++.++++. ... . ..++++++.+|..+. ...++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 34579999999999999988773 3 59999999999999999842 211 1 136899999999872 2346899
Q ss_pred EEEecccccccCh---hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEE
Q 024021 177 LIFDYTFFCAIEP---EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAIS 245 (274)
Q Consensus 177 ~v~~~~~~~~~~~---~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 245 (274)
+|++.......+. -...++++.+.+.|+|||.+++...+.... .....++.+.+++.||.+..
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~------~~~~~~i~~~l~~~gf~v~~ 441 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFA------PKAFWSIEATLEAAGLATTP 441 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccc------hHHHHHHHHHHHHcCCEEEE
Confidence 9998754332211 112468899999999999988765221100 01245788999999994433
No 146
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.21 E-value=4.3e-10 Score=101.67 Aligned_cols=133 Identities=19% Similarity=0.164 Sum_probs=97.1
Q ss_pred CCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC--CCCCeeEEEec
Q 024021 107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--PTELFDLIFDY 181 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~D~v~~~ 181 (274)
.++.+|||+|||+|..+..+++ .+.+|+++|+++.+++.+++++...+.. +++++.+|+.+.. ..++||+|++.
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~~~~~~fD~Vl~D 327 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT-NIETKALDARKVHEKFAEKFDKILVD 327 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCCcccccchhcccCCEEEEc
Confidence 4567999999999999998876 3569999999999999999999888764 4999999997742 12679999986
Q ss_pred cccccc------C-------hh-------HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCC-
Q 024021 182 TFFCAI------E-------PE-------MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMG- 240 (274)
Q Consensus 182 ~~~~~~------~-------~~-------~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G- 240 (274)
...... | +. ....++..+.++|+|||.++..+...... -....+.+.++.++
T Consensus 328 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~-------Ene~vv~~~l~~~~~ 400 (444)
T PRK14902 328 APCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKE-------ENEEVIEAFLEEHPE 400 (444)
T ss_pred CCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChh-------hhHHHHHHHHHhCCC
Confidence 442111 1 11 12467899999999999998765433211 13456666777764
Q ss_pred CcEEEEe
Q 024021 241 FQAISIV 247 (274)
Q Consensus 241 f~~~~~~ 247 (274)
|+.+.+.
T Consensus 401 ~~~~~~~ 407 (444)
T PRK14902 401 FELVPLQ 407 (444)
T ss_pred cEEeccc
Confidence 7776654
No 147
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.21 E-value=5.1e-10 Score=100.48 Aligned_cols=133 Identities=17% Similarity=0.167 Sum_probs=97.4
Q ss_pred CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC--CCCCeeEEEe
Q 024021 106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--PTELFDLIFD 180 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~D~v~~ 180 (274)
..++.+|||+|||+|..+..++. .+.+|+++|+++.+++.+++++...+.. ++++..+|..... ..++||.|++
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~-~v~~~~~Da~~l~~~~~~~fD~Vl~ 313 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS-SIEIKIADAERLTEYVQDTFDRILV 313 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhhhhhhhhccCCEEEE
Confidence 34567999999999999988876 3569999999999999999999887764 5899999987632 3567999997
Q ss_pred ccccc---cc--Chh---------------HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcC-
Q 024021 181 YTFFC---AI--EPE---------------MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPM- 239 (274)
Q Consensus 181 ~~~~~---~~--~~~---------------~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~- 239 (274)
..... .+ .++ ....++..+.+.|+|||.++..+.+.... -+.+.+.+.++.+
T Consensus 314 DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~e-------Ene~vv~~fl~~~~ 386 (431)
T PRK14903 314 DAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKE-------ENTEVVKRFVYEQK 386 (431)
T ss_pred CCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChh-------hCHHHHHHHHHhCC
Confidence 54331 11 111 22567899999999999998887655321 1455666666654
Q ss_pred CCcEEEE
Q 024021 240 GFQAISI 246 (274)
Q Consensus 240 Gf~~~~~ 246 (274)
+|..+..
T Consensus 387 ~~~~~~~ 393 (431)
T PRK14903 387 DAEVIDI 393 (431)
T ss_pred CcEEecc
Confidence 5765543
No 148
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.21 E-value=4.5e-10 Score=100.96 Aligned_cols=130 Identities=18% Similarity=0.129 Sum_probs=94.8
Q ss_pred CCCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC---CCCCeeEEEe
Q 024021 106 ALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC---PTELFDLIFD 180 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~D~v~~ 180 (274)
..++.+|||+|||+|..+..+++ .+.+++++|+++.+++.+++++...+...++.+..+|..... +.++||.|++
T Consensus 236 ~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~Vll 315 (426)
T TIGR00563 236 PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILL 315 (426)
T ss_pred CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEE
Confidence 34568999999999999988876 346999999999999999999988776544555777766532 3567999996
Q ss_pred c------ccccccCh-------h-------HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCC
Q 024021 181 Y------TFFCAIEP-------E-------MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMG 240 (274)
Q Consensus 181 ~------~~~~~~~~-------~-------~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 240 (274)
. +++...|+ . ....++..+.++|+|||.++..+.+.... -+...+...++.++
T Consensus 316 DaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~-------Ene~~v~~~l~~~~ 388 (426)
T TIGR00563 316 DAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPE-------ENSEQIKAFLQEHP 388 (426)
T ss_pred cCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChh-------hCHHHHHHHHHhCC
Confidence 4 23333221 1 13578899999999999999987655321 14566777777763
Q ss_pred -Cc
Q 024021 241 -FQ 242 (274)
Q Consensus 241 -f~ 242 (274)
|.
T Consensus 389 ~~~ 391 (426)
T TIGR00563 389 DFP 391 (426)
T ss_pred CCe
Confidence 54
No 149
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.20 E-value=3.9e-10 Score=101.57 Aligned_cols=131 Identities=18% Similarity=0.174 Sum_probs=97.4
Q ss_pred CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----CCCCeeE
Q 024021 106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----PTELFDL 177 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~D~ 177 (274)
..++.+|||+|||+|..+..+++ ...+|+++|+++.+++.+++++...+.. +++++.+|..+.. ..++||.
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~~~fD~ 328 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK-SIKILAADSRNLLELKPQWRGYFDR 328 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC-eEEEEeCChhhcccccccccccCCE
Confidence 34568999999999999988876 2458999999999999999999888764 5999999987642 2468999
Q ss_pred EEecc------cccccCh-------h-------HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHh
Q 024021 178 IFDYT------FFCAIEP-------E-------MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQ 237 (274)
Q Consensus 178 v~~~~------~~~~~~~-------~-------~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 237 (274)
|++.. ++..-++ . ....++..+.+.|+|||+++..+.+.... -..+.+...++
T Consensus 329 Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~-------Ene~~v~~~l~ 401 (434)
T PRK14901 329 ILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPA-------ENEAQIEQFLA 401 (434)
T ss_pred EEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChh-------hHHHHHHHHHH
Confidence 99743 2222221 1 13578999999999999998876544211 13567777888
Q ss_pred cC-CCcEE
Q 024021 238 PM-GFQAI 244 (274)
Q Consensus 238 ~~-Gf~~~ 244 (274)
++ +|.+.
T Consensus 402 ~~~~~~~~ 409 (434)
T PRK14901 402 RHPDWKLE 409 (434)
T ss_pred hCCCcEec
Confidence 77 57644
No 150
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.19 E-value=1.5e-10 Score=95.73 Aligned_cols=101 Identities=16% Similarity=0.213 Sum_probs=84.7
Q ss_pred CCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC--------CCCe
Q 024021 107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--------TELF 175 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~ 175 (274)
..+.+|||+|+++|+.+.+++. ++.+++.+|.+++..+.|++++...++.++++++.+|..+..+ .++|
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~f 157 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTF 157 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcc
Confidence 4568999999999999998876 4679999999999999999999999988999999999877221 2589
Q ss_pred eEEEecccccccChhHHHHHHHHHHhcccCCcEEEEE
Q 024021 176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITL 212 (274)
Q Consensus 176 D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~ 212 (274)
|+|+... +......+++.+.+.|+|||.|++-
T Consensus 158 D~iFiDa-----dK~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 158 DFIFVDA-----DKDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred cEEEecC-----CHHHhHHHHHHHHHhcCCCeEEEEc
Confidence 9999432 2345678889999999999998873
No 151
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=99.19 E-value=5.8e-11 Score=94.90 Aligned_cols=105 Identities=25% Similarity=0.307 Sum_probs=72.9
Q ss_pred CCeEEEEcCCcchhHHHh----hC-----C--CCeEEEEeCChHHHHHHHHHhhcC-------------------C----
Q 024021 109 KGRALVPGCGTGYDVVAM----AS-----P--ERYVVGLEISDIAIKKAEELSSSL-------------------P---- 154 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l----~~-----~--~~~v~~vD~~~~~~~~a~~~~~~~-------------------~---- 154 (274)
..+|+..||++|.-...+ .+ . ..+|+|+|+|+.+++.|++-.-.. +
T Consensus 32 ~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~ 111 (196)
T PF01739_consen 32 PLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGYR 111 (196)
T ss_dssp -EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTT
T ss_pred CeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCcee
Confidence 469999999999764322 22 2 248999999999999997732111 0
Q ss_pred ----CCcceEEEEcccCC-CCCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021 155 ----NAKFVSFLKADFFT-WCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 155 ----~~~~~~~~~~d~~~-~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 213 (274)
+..+|+|...|+.+ ..+.+.||+|+|.+++.+++++....+++.+++.|+|||++++..
T Consensus 112 v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 112 VKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp E-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred EChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 12469999999998 666678999999999999999999999999999999999999854
No 152
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=99.19 E-value=1.3e-10 Score=92.50 Aligned_cols=139 Identities=18% Similarity=0.176 Sum_probs=105.1
Q ss_pred CCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCC-CcceEEEEcccCC---CCCCCCeeEEEecc
Q 024021 108 PKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPN-AKFVSFLKADFFT---WCPTELFDLIFDYT 182 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~~~d~~~---~~~~~~~D~v~~~~ 182 (274)
.+.+|||.+.|-|+.++..++.|+ +|+.+|.+|..++.|+-|--+.++ ..+++++.+|..+ ..++++||+|+-..
T Consensus 134 ~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHDP 213 (287)
T COG2521 134 RGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIHDP 213 (287)
T ss_pred cCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEeeCC
Confidence 468999999999999999999999 999999999999999876544332 3468999999987 46678899999543
Q ss_pred c-ccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeec
Q 024021 183 F-FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDN 249 (274)
Q Consensus 183 ~-~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 249 (274)
. |.....=....+.++++++|+|||.++-..-.+.....|-. -+..+.+.|+++||.+++....
T Consensus 214 PRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d---~~~gVa~RLr~vGF~~v~~~~~ 278 (287)
T COG2521 214 PRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLD---LPKGVAERLRRVGFEVVKKVRE 278 (287)
T ss_pred CccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCC---hhHHHHHHHHhcCceeeeeehh
Confidence 3 22111113357889999999999999887754432222211 3688999999999998776553
No 153
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.17 E-value=3.5e-10 Score=101.99 Aligned_cols=126 Identities=19% Similarity=0.183 Sum_probs=95.4
Q ss_pred CCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----CCCCeeEEEecc
Q 024021 108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----PTELFDLIFDYT 182 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~D~v~~~~ 182 (274)
++.+|||+|||+|.++..+++...+|+++|+++.+++.|++++..++. .+++|+.+|+.+.. ....||+|++..
T Consensus 292 ~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~-~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dP 370 (431)
T TIGR00479 292 GEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGI-ANVEFLAGTLETVLPKQPWAGQIPDVLLLDP 370 (431)
T ss_pred CCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCC-CceEEEeCCHHHHHHHHHhcCCCCCEEEECc
Confidence 447999999999999999998777999999999999999999987765 57999999987521 234699999766
Q ss_pred cccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024021 183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNK 250 (274)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 250 (274)
.-..+. ..+++.+.+ ++|++++++.+.+. +...-.+.|...||++..+...+
T Consensus 371 Pr~G~~----~~~l~~l~~-l~~~~ivyvsc~p~-----------tlard~~~l~~~gy~~~~~~~~D 422 (431)
T TIGR00479 371 PRKGCA----AEVLRTIIE-LKPERIVYVSCNPA-----------TLARDLEFLCKEGYGITWVQPVD 422 (431)
T ss_pred CCCCCC----HHHHHHHHh-cCCCEEEEEcCCHH-----------HHHHHHHHHHHCCeeEEEEEEec
Confidence 543332 345555554 78998887765221 44455666777899988877654
No 154
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=99.16 E-value=4.4e-10 Score=90.08 Aligned_cols=154 Identities=21% Similarity=0.275 Sum_probs=101.2
Q ss_pred cHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhC-CC-CeEEEEeCChHHHHHHHHHhhcCCC-----------------
Q 024021 95 APIIVHLHQSGALPKGRALVPGCGTGYDVVAMAS-PE-RYVVGLEISDIAIKKAEELSSSLPN----------------- 155 (274)
Q Consensus 95 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~-~~-~~v~~vD~~~~~~~~a~~~~~~~~~----------------- 155 (274)
.+.+..+ +.....+..+|||||..|.++..+++ -+ ..+.|+|+++..+..|+++++..-.
T Consensus 46 D~rLk~L-~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~ 124 (288)
T KOG2899|consen 46 DPRLKVL-EKDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQF 124 (288)
T ss_pred Chhhhhc-cccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccc
Confidence 3444444 33345678999999999999999998 33 4799999999999999997653210
Q ss_pred -----------------CcceEE-------EEcccCCCCCCCCeeEEEeccc--cccc--ChhHHHHHHHHHHhcccCCc
Q 024021 156 -----------------AKFVSF-------LKADFFTWCPTELFDLIFDYTF--FCAI--EPEMRAAWAQKIKDFLKPDG 207 (274)
Q Consensus 156 -----------------~~~~~~-------~~~d~~~~~~~~~~D~v~~~~~--~~~~--~~~~~~~~l~~~~~~L~pgG 207 (274)
.+++.| ...|+. ......||+|+|..+ +-|+ .++-+..++.++.++|.|||
T Consensus 125 ~~is~~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl-~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgG 203 (288)
T KOG2899|consen 125 GPISQRNEADRAFTTDFPDNVWFQKENYVLESDDFL-DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGG 203 (288)
T ss_pred ccccccccccccccccCCcchhcccccEEEecchhh-hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCc
Confidence 001111 122222 223467999999755 3333 45667889999999999999
Q ss_pred EEEEEEccCCC-----------CCCCCCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024021 208 ELITLMFPISD-----------HVGGPPYKVSVSDYEEVLQPMGFQAISIVDNK 250 (274)
Q Consensus 208 ~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 250 (274)
++++.-.+-.. ...-....+.++.+..++.+.+.....++...
T Consensus 204 iLvvEPQpWksY~kaar~~e~~~~ny~~i~lkp~~f~~~l~q~~vgle~~e~~~ 257 (288)
T KOG2899|consen 204 ILVVEPQPWKSYKKAARRSEKLAANYFKIFLKPEDFEDWLNQIVVGLESVEDLG 257 (288)
T ss_pred EEEEcCCchHHHHHHHHHHHHhhcCccceecCHHHHHhhhhhhhhheeeecccc
Confidence 99984432210 01112334688999999988865555555544
No 155
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.16 E-value=8.2e-10 Score=94.00 Aligned_cols=143 Identities=18% Similarity=0.181 Sum_probs=109.7
Q ss_pred CCccHHHHHHHhcC--CCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc-ccCC
Q 024021 92 GQPAPIIVHLHQSG--ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA-DFFT 168 (274)
Q Consensus 92 ~~~~~~~~~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~-d~~~ 168 (274)
....+.+...+-++ ..++..|||.-||||.+++.+...|++++|+|++..|+.-|+.|+...+..+ ..+... |+..
T Consensus 179 ~s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~-~~~~~~~Da~~ 257 (347)
T COG1041 179 GSMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIED-YPVLKVLDATN 257 (347)
T ss_pred CCcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcCc-eeEEEeccccc
Confidence 34466666666554 4456799999999999999999999999999999999999999998876543 444554 8888
Q ss_pred -CCCCCCeeEEEecccccccC-------hhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCC
Q 024021 169 -WCPTELFDLIFDYTFFCAIE-------PEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMG 240 (274)
Q Consensus 169 -~~~~~~~D~v~~~~~~~~~~-------~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 240 (274)
+.+.+.+|.|++-..+.-.. ++....+++.+.++|++||++++... ......+++.|
T Consensus 258 lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p---------------~~~~~~~~~~~ 322 (347)
T COG1041 258 LPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP---------------RDPRHELEELG 322 (347)
T ss_pred CCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC---------------CcchhhHhhcC
Confidence 44445699999988776532 24567899999999999999988763 22334567789
Q ss_pred CcEEEEeecc
Q 024021 241 FQAISIVDNK 250 (274)
Q Consensus 241 f~~~~~~~~~ 250 (274)
|.++......
T Consensus 323 f~v~~~~~~~ 332 (347)
T COG1041 323 FKVLGRFTMR 332 (347)
T ss_pred ceEEEEEEEe
Confidence 9998876543
No 156
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.15 E-value=1.2e-10 Score=93.27 Aligned_cols=103 Identities=16% Similarity=0.147 Sum_probs=77.1
Q ss_pred CeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEecccccccC
Q 024021 110 GRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFFCAIE 188 (274)
Q Consensus 110 ~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~~~~~~~~ 188 (274)
+.++|+|||+|..++.++..--+|+|+|+++.|++.|++..+..-.....++...+..+ ...++++|+|++..++|+++
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWFd 114 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWFD 114 (261)
T ss_pred ceEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHhhc
Confidence 48999999999777777776558999999999999998876543222223444444444 23468999999999999985
Q ss_pred hhHHHHHHHHHHhcccCCc-EEEEEEcc
Q 024021 189 PEMRAAWAQKIKDFLKPDG-ELITLMFP 215 (274)
Q Consensus 189 ~~~~~~~l~~~~~~L~pgG-~~~~~~~~ 215 (274)
+..+.+.+.++|+++| .+.+-.+.
T Consensus 115 ---le~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 115 ---LERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred ---hHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 3577899999998877 55555544
No 157
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.14 E-value=5.2e-10 Score=89.67 Aligned_cols=125 Identities=24% Similarity=0.241 Sum_probs=90.1
Q ss_pred CeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC----CCCCCCeeEEEeccc
Q 024021 110 GRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLIFDYTF 183 (274)
Q Consensus 110 ~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~----~~~~~~~D~v~~~~~ 183 (274)
..+||||||.|.++..++. ++..++|+|+....+..+..++...++ .|+.++.+|+.. ..+++++|-|+.+++
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l-~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGL-KNVRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTT-SSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcc-cceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 4899999999999998887 788999999999999999998877655 579999999987 455688999997654
Q ss_pred ccccChhH------HHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcC--CCcEEE
Q 024021 184 FCAIEPEM------RAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPM--GFQAIS 245 (274)
Q Consensus 184 ~~~~~~~~------~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--Gf~~~~ 245 (274)
=-+.-... ...+++.+.++|+|||.+.+.+-.. .-.+.+.+.++.. +|..+.
T Consensus 98 DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~----------~y~~~~~~~~~~~~~~f~~~~ 157 (195)
T PF02390_consen 98 DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVE----------EYAEWMLEQFEESHPGFENIE 157 (195)
T ss_dssp ----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-H----------HHHHHHHHHHHHHSTTEEEE-
T ss_pred CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCH----------HHHHHHHHHHHhcCcCeEEcc
Confidence 32211111 2588999999999999999877111 1235666666663 677664
No 158
>PLN02366 spermidine synthase
Probab=99.14 E-value=8.8e-10 Score=94.27 Aligned_cols=107 Identities=18% Similarity=0.206 Sum_probs=81.7
Q ss_pred CCCCeEEEEcCCcchhHHHhhC-CC-CeEEEEeCChHHHHHHHHHhhcCC---CCcceEEEEcccCCC---CCCCCeeEE
Q 024021 107 LPKGRALVPGCGTGYDVVAMAS-PE-RYVVGLEISDIAIKKAEELSSSLP---NAKFVSFLKADFFTW---CPTELFDLI 178 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~-~~-~~v~~vD~~~~~~~~a~~~~~~~~---~~~~~~~~~~d~~~~---~~~~~~D~v 178 (274)
..+.+||++|||.|..+..+++ ++ .+|+.+|+++.+++.+++.++..+ ..++++++.+|.... .+.++||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 3468999999999999999987 33 589999999999999999876421 236899999998662 235689999
Q ss_pred EecccccccChh--HHHHHHHHHHhcccCCcEEEEEE
Q 024021 179 FDYTFFCAIEPE--MRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 179 ~~~~~~~~~~~~--~~~~~l~~~~~~L~pgG~~~~~~ 213 (274)
++...-...+.. ....+++.+.+.|+|||++++..
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 986433222211 23578899999999999987643
No 159
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=99.13 E-value=7.2e-10 Score=92.79 Aligned_cols=105 Identities=18% Similarity=0.207 Sum_probs=85.5
Q ss_pred CCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccc
Q 024021 106 ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF 184 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~ 184 (274)
+..++.|||+|||+|.+++..+..|+ +|+++|. .+|.+.|++.+..+.+.++++.+.+.+.+...+++.|++++-..-
T Consensus 175 DF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEA-S~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPMG 253 (517)
T KOG1500|consen 175 DFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEA-SEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPMG 253 (517)
T ss_pred ccCCcEEEEecCCccHHHHHHHHhCcceEEEEeh-hHHHHHHHHHHhcCCccceEEEccCccccccCchhccEEEeccch
Confidence 56778999999999999999999887 8999998 569999999999998899999999999997777899999986543
Q ss_pred ccc-ChhHHHHHHHHHHhcccCCcEEEEE
Q 024021 185 CAI-EPEMRAAWAQKIKDFLKPDGELITL 212 (274)
Q Consensus 185 ~~~-~~~~~~~~l~~~~~~L~pgG~~~~~ 212 (274)
..+ .+.++..++ ..++.|+|.|.++-.
T Consensus 254 ~mL~NERMLEsYl-~Ark~l~P~GkMfPT 281 (517)
T KOG1500|consen 254 YMLVNERMLESYL-HARKWLKPNGKMFPT 281 (517)
T ss_pred hhhhhHHHHHHHH-HHHhhcCCCCcccCc
Confidence 333 333444443 456999999987643
No 160
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=99.13 E-value=7.5e-10 Score=94.83 Aligned_cols=140 Identities=17% Similarity=0.130 Sum_probs=92.4
Q ss_pred CCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcC-CCCcceEEEE-ccc---CCC--CCCCCeeEEE
Q 024021 109 KGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSL-PNAKFVSFLK-ADF---FTW--CPTELFDLIF 179 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~~~~~~-~d~---~~~--~~~~~~D~v~ 179 (274)
..++||||||+|.....++. .+.+++|+|+++.+++.|++++..+ ++.+++++.. .|. ... .+.+.||+|+
T Consensus 115 ~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDliv 194 (321)
T PRK11727 115 NVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDATL 194 (321)
T ss_pred CceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEEE
Confidence 46999999999988777655 5789999999999999999999988 6777888864 232 221 2356899999
Q ss_pred ecccccccChhHH---HHHHHH----------------HHhcccCCcEEEEEEccCCCC----CCCCCcc------cCHH
Q 024021 180 DYTFFCAIEPEMR---AAWAQK----------------IKDFLKPDGELITLMFPISDH----VGGPPYK------VSVS 230 (274)
Q Consensus 180 ~~~~~~~~~~~~~---~~~l~~----------------~~~~L~pgG~~~~~~~~~~~~----~~~~~~~------~~~~ 230 (274)
|+..|+.-..+.. ..-.+. ..+++.+||.+-++..-..+. ....+|. -+..
T Consensus 195 cNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS~~~~~~~gwftsmv~kk~~l~ 274 (321)
T PRK11727 195 CNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEESKAFAKQVLWFTSLVSKKENLP 274 (321)
T ss_pred eCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHHHHHHhhCcEEEEEeeccCCHH
Confidence 9999875432211 111111 234455777755433222111 0011111 2788
Q ss_pred HHHHHHhcCCCcEEEEee
Q 024021 231 DYEEVLQPMGFQAISIVD 248 (274)
Q Consensus 231 ~~~~~l~~~Gf~~~~~~~ 248 (274)
.+.+.|++.|...+.+.+
T Consensus 275 ~l~~~L~~~~~~~~~~~e 292 (321)
T PRK11727 275 PLYRALKKVGAVEVKTIE 292 (321)
T ss_pred HHHHHHHHcCCceEEEEE
Confidence 999999999986666554
No 161
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=99.13 E-value=2.5e-10 Score=102.30 Aligned_cols=102 Identities=20% Similarity=0.153 Sum_probs=79.0
Q ss_pred CCeEEEEcCCcchhHHHhhCCC------CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecc
Q 024021 109 KGRALVPGCGTGYDVVAMASPE------RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYT 182 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l~~~~------~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~ 182 (274)
+..|||+|||+|.+....++.+ .+|+++|-++.++...++++..+++.++|+++.+|+++...+.++|+|++=.
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSEl 266 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSEL 266 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE--
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEec
Confidence 4689999999999987665543 4999999999999888887777778889999999999977777999999854
Q ss_pred cccccChhHHHHHHHHHHhcccCCcEEE
Q 024021 183 FFCAIEPEMRAAWAQKIKDFLKPDGELI 210 (274)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~ 210 (274)
.-.....+...+.+....+.|+|||+++
T Consensus 267 LGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 267 LGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp -BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred cCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 4333444566778899999999999876
No 162
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.13 E-value=6.9e-10 Score=93.81 Aligned_cols=105 Identities=19% Similarity=0.190 Sum_probs=79.8
Q ss_pred CCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcCC---CCcceEEEEcccCCC--CCCCCeeEEEe
Q 024021 108 PKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLP---NAKFVSFLKADFFTW--CPTELFDLIFD 180 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~~~~~~~d~~~~--~~~~~~D~v~~ 180 (274)
.+.+||++|||+|..+..+++. ..+++++|+++++++.+++.++... ..++++++.+|..+. ...++||+|++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 3469999999999999888763 3589999999999999999875432 135788888888662 22468999998
Q ss_pred cccccccChhH--HHHHHHHHHhcccCCcEEEEE
Q 024021 181 YTFFCAIEPEM--RAAWAQKIKDFLKPDGELITL 212 (274)
Q Consensus 181 ~~~~~~~~~~~--~~~~l~~~~~~L~pgG~~~~~ 212 (274)
......-+... ...+++.+.+.|+|||.+++.
T Consensus 152 D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 152 DSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred eCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 65532222122 467889999999999999886
No 163
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.12 E-value=4.7e-10 Score=88.40 Aligned_cols=105 Identities=21% Similarity=0.214 Sum_probs=73.6
Q ss_pred CCCCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcCC--CCcceEEEEcccCCC-----CCCCCee
Q 024021 106 ALPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLP--NAKFVSFLKADFFTW-----CPTELFD 176 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~~-----~~~~~~D 176 (274)
..++.+|||+|||+|..++.++.. +.+|+..|.++ .++..+.++..++ ...++.+...|..+. ....+||
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 345689999999999999988886 66999999988 9999999998875 456788888887651 2346899
Q ss_pred EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021 177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 177 ~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 213 (274)
+|++..+++. ++....+++.+.++|+++|.+++..
T Consensus 122 ~IlasDv~Y~--~~~~~~L~~tl~~ll~~~~~vl~~~ 156 (173)
T PF10294_consen 122 VILASDVLYD--EELFEPLVRTLKRLLKPNGKVLLAY 156 (173)
T ss_dssp EEEEES--S---GGGHHHHHHHHHHHBTT-TTEEEEE
T ss_pred EEEEecccch--HHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 9999999875 3667889999999999999866654
No 164
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=99.12 E-value=1.2e-09 Score=92.64 Aligned_cols=136 Identities=16% Similarity=0.158 Sum_probs=107.8
Q ss_pred CeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccccCh
Q 024021 110 GRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEP 189 (274)
Q Consensus 110 ~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~ 189 (274)
...+|+|.|.|..+..+...-.++-+++++...+..++.... .+ |+.+.+|.++..|. -|+||..+++++|.+
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~~P~--~daI~mkWiLhdwtD 251 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQDTPK--GDAIWMKWILHDWTD 251 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc-CC----cceecccccccCCC--cCeEEEEeecccCCh
Confidence 689999999999999888733368888888877777776664 32 88899999886544 479999999999999
Q ss_pred hHHHHHHHHHHhcccCCcEEEEEEccCCCC-CCC---C----------------CcccCHHHHHHHHhcCCCcEEEEeec
Q 024021 190 EMRAAWAQKIKDFLKPDGELITLMFPISDH-VGG---P----------------PYKVSVSDYEEVLQPMGFQAISIVDN 249 (274)
Q Consensus 190 ~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~-~~~---~----------------~~~~~~~~~~~~l~~~Gf~~~~~~~~ 249 (274)
++..++++++++.|+|||.+++.+...... ..+ . -...+..+++..+.++||.+..+...
T Consensus 252 edcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~q~l~~~~gF~~~~~~~~ 331 (342)
T KOG3178|consen 252 EDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEFQALLPEEGFPVCMVALT 331 (342)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceeccHHHHHhcchhhcCceeEEEec
Confidence 999999999999999999999988744321 111 0 11237899999999999999888775
Q ss_pred ccc
Q 024021 250 KLA 252 (274)
Q Consensus 250 ~~~ 252 (274)
...
T Consensus 332 ~~~ 334 (342)
T KOG3178|consen 332 AYS 334 (342)
T ss_pred cCc
Confidence 543
No 165
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.12 E-value=1.1e-09 Score=95.93 Aligned_cols=134 Identities=22% Similarity=0.130 Sum_probs=100.1
Q ss_pred CCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCC-cceEEEEcccCCCC-----CCCCeeEEEec
Q 024021 109 KGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNA-KFVSFLKADFFTWC-----PTELFDLIFDY 181 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~-----~~~~~D~v~~~ 181 (274)
+++|||+-|-||.++...+..|+ +|++||.|..+++.|++|+..+++. .++.|+++|+++.. ...+||+|+..
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilD 297 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIILD 297 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEEC
Confidence 88999999999999999999999 9999999999999999999999874 56899999999832 23489999975
Q ss_pred cc-ccccC------hhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEe
Q 024021 182 TF-FCAIE------PEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIV 247 (274)
Q Consensus 182 ~~-~~~~~------~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 247 (274)
.+ |..-. ......++..+.++|+|||.+++.+....-. ...-.+.+.+.+...|.....+.
T Consensus 298 PPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~-----~~~f~~~i~~a~~~~~~~~~~~~ 365 (393)
T COG1092 298 PPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFS-----SDLFLEIIARAAAAAGRRAQEIE 365 (393)
T ss_pred CcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccC-----HHHHHHHHHHHHHhcCCcEEEee
Confidence 43 22111 1234678899999999999999877433210 00123445555566666665554
No 166
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.12 E-value=1.7e-09 Score=91.16 Aligned_cols=110 Identities=19% Similarity=0.123 Sum_probs=83.8
Q ss_pred CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCCeeEEEec
Q 024021 106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDY 181 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~ 181 (274)
..++.+|||+|||+|..+..++. ....|+++|+++.+++.+++++...+. .++.++..|.... ...+.||.|++.
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~-~~v~~~~~D~~~~~~~~~~fD~Vl~D 147 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV-LNVAVTNFDGRVFGAAVPKFDAILLD 147 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC-CcEEEecCCHHHhhhhccCCCEEEEc
Confidence 34668999999999999988766 245899999999999999999988776 3589999998663 233569999975
Q ss_pred ccccc-------------cChh-------HHHHHHHHHHhcccCCcEEEEEEccC
Q 024021 182 TFFCA-------------IEPE-------MRAAWAQKIKDFLKPDGELITLMFPI 216 (274)
Q Consensus 182 ~~~~~-------------~~~~-------~~~~~l~~~~~~L~pgG~~~~~~~~~ 216 (274)
..... +.+. ....+++.+.+.|+|||+++..+.+.
T Consensus 148 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 148 APCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred CCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 43221 1111 12468999999999999998876544
No 167
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=99.11 E-value=1.6e-09 Score=88.54 Aligned_cols=135 Identities=21% Similarity=0.228 Sum_probs=94.6
Q ss_pred CCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccccC
Q 024021 109 KGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIE 188 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~ 188 (274)
..++||||+|.|..+..++..-.+|++.|.|+.|....+++- .+.+..|-.. ..+.+||+|.|.+++...+
T Consensus 95 ~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~kg--------~~vl~~~~w~-~~~~~fDvIscLNvLDRc~ 165 (265)
T PF05219_consen 95 DKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSKKG--------FTVLDIDDWQ-QTDFKFDVISCLNVLDRCD 165 (265)
T ss_pred CCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHhCC--------CeEEehhhhh-ccCCceEEEeehhhhhccC
Confidence 468999999999999999876668999999999987776542 3333322211 1235799999999998875
Q ss_pred hhHHHHHHHHHHhcccCCcEEEEEE---------ccC-CCC-------CCCCCcccCHHHHHHHHhcCCCcEEEEeeccc
Q 024021 189 PEMRAAWAQKIKDFLKPDGELITLM---------FPI-SDH-------VGGPPYKVSVSDYEEVLQPMGFQAISIVDNKL 251 (274)
Q Consensus 189 ~~~~~~~l~~~~~~L~pgG~~~~~~---------~~~-~~~-------~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~ 251 (274)
.+ ..+++.+++.|+|+|++++.. ++. ... ..|..+.-....+.+.++.+||+++.....++
T Consensus 166 ~P--~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~~v~~p~GF~v~~~tr~PY 243 (265)
T PF05219_consen 166 RP--LTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLVNVFEPAGFEVERWTRLPY 243 (265)
T ss_pred CH--HHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHHHHHHhcCCEEEEEeccCc
Confidence 33 578999999999999988733 221 000 01111222345555889999999999887665
Q ss_pred ccC
Q 024021 252 AIG 254 (274)
Q Consensus 252 ~~~ 254 (274)
-..
T Consensus 244 LcE 246 (265)
T PF05219_consen 244 LCE 246 (265)
T ss_pred ccc
Confidence 443
No 168
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=99.09 E-value=7.7e-10 Score=87.45 Aligned_cols=141 Identities=15% Similarity=0.182 Sum_probs=88.9
Q ss_pred hhHhhhcCCCCccCCCccHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCc
Q 024021 78 WEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAK 157 (274)
Q Consensus 78 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~ 157 (274)
|.+.|.+....|- ..|-..+...+.. ..+...|-|+|||.+.++..+. .+..|..+|+-+ .
T Consensus 44 YH~Gfr~Qv~~WP-~nPvd~iI~~l~~-~~~~~viaD~GCGdA~la~~~~-~~~~V~SfDLva----------------~ 104 (219)
T PF05148_consen 44 YHEGFRQQVKKWP-VNPVDVIIEWLKK-RPKSLVIADFGCGDAKLAKAVP-NKHKVHSFDLVA----------------P 104 (219)
T ss_dssp HHHHHHHHHCTSS-S-HHHHHHHHHCT-S-TTS-EEEES-TT-HHHHH---S---EEEEESS-----------------S
T ss_pred HHHHHHHHHhcCC-CCcHHHHHHHHHh-cCCCEEEEECCCchHHHHHhcc-cCceEEEeeccC----------------C
Confidence 3445555555665 3344444555542 1223699999999999996653 556899999954 2
Q ss_pred ceEEEEcccCC-CCCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHH
Q 024021 158 FVSFLKADFFT-WCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVL 236 (274)
Q Consensus 158 ~~~~~~~d~~~-~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 236 (274)
+-.+..+|+.+ +.+++.+|++++...+.. .++..++.+..|+|||||.+.+++-... +.+.+++.+.+
T Consensus 105 n~~Vtacdia~vPL~~~svDv~VfcLSLMG---Tn~~~fi~EA~RvLK~~G~L~IAEV~SR--------f~~~~~F~~~~ 173 (219)
T PF05148_consen 105 NPRVTACDIANVPLEDESVDVAVFCLSLMG---TNWPDFIREANRVLKPGGILKIAEVKSR--------FENVKQFIKAL 173 (219)
T ss_dssp STTEEES-TTS-S--TT-EEEEEEES---S---S-HHHHHHHHHHHEEEEEEEEEEEEGGG---------S-HHHHHHHH
T ss_pred CCCEEEecCccCcCCCCceeEEEEEhhhhC---CCcHHHHHHHHheeccCcEEEEEEeccc--------CcCHHHHHHHH
Confidence 34567899987 778889999997766654 4677899999999999999999884332 23789999999
Q ss_pred hcCCCcEEEEee
Q 024021 237 QPMGFQAISIVD 248 (274)
Q Consensus 237 ~~~Gf~~~~~~~ 248 (274)
+..||.......
T Consensus 174 ~~~GF~~~~~d~ 185 (219)
T PF05148_consen 174 KKLGFKLKSKDE 185 (219)
T ss_dssp HCTTEEEEEEE-
T ss_pred HHCCCeEEeccc
Confidence 999999988654
No 169
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=99.09 E-value=7.2e-09 Score=86.28 Aligned_cols=138 Identities=22% Similarity=0.290 Sum_probs=102.1
Q ss_pred CCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhc---CC-------------------------------
Q 024021 109 KGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSS---LP------------------------------- 154 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~---~~------------------------------- 154 (274)
+.+||-.|||.|.++..++..|..+.|.|+|--|+-...-.+.. .+
T Consensus 57 ~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv~p 136 (270)
T PF07942_consen 57 KIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDVDP 136 (270)
T ss_pred ccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCcCc
Confidence 36999999999999999999999999999999887554432221 00
Q ss_pred -----CCcceEEEEcccCCCC-C---CCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEcc---CCCC--C
Q 024021 155 -----NAKFVSFLKADFFTWC-P---TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP---ISDH--V 220 (274)
Q Consensus 155 -----~~~~~~~~~~d~~~~~-~---~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~---~~~~--~ 220 (274)
...++....||+.+.. + .++||+|++...+.-. .+.-.+++.|.++|||||+++=.-.- ..+. .
T Consensus 137 ~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA--~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~~~ 214 (270)
T PF07942_consen 137 SSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTA--ENIIEYIETIEHLLKPGGYWINFGPLLYHFEPMSIP 214 (270)
T ss_pred ccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeech--HHHHHHHHHHHHHhccCCEEEecCCccccCCCCCCC
Confidence 1235778888988832 2 2589999998776654 56789999999999999976542211 1111 1
Q ss_pred CCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024021 221 GGPPYKVSVSDYEEVLQPMGFQAISIVD 248 (274)
Q Consensus 221 ~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 248 (274)
......++.+|+.++++..||+++..+.
T Consensus 215 ~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 215 NEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred CCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 1223668999999999999999988766
No 170
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.08 E-value=3.3e-09 Score=83.98 Aligned_cols=127 Identities=20% Similarity=0.293 Sum_probs=92.2
Q ss_pred CCCCeEEEEcCCcchhHHHhhC--CCCe---------EEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-CCCC
Q 024021 107 LPKGRALVPGCGTGYDVVAMAS--PERY---------VVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-PTEL 174 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~--~~~~---------v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~ 174 (274)
.++..|||.-||+|.+.+..+. .+.. ++|+|+++.++..|++++...+....+.+...|+.+.. ..+.
T Consensus 27 ~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~~ 106 (179)
T PF01170_consen 27 RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDGS 106 (179)
T ss_dssp -TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTSB
T ss_pred CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccCC
Confidence 4457999999999999987765 3333 89999999999999999998888888999999999855 6778
Q ss_pred eeEEEeccccccc-Ch-----hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024021 175 FDLIFDYTFFCAI-EP-----EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD 248 (274)
Q Consensus 175 ~D~v~~~~~~~~~-~~-----~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 248 (274)
+|.|+++..+..- .. .....+++.+.+++++ ..+++.. ....+.+.+...++.......
T Consensus 107 ~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~--------------~~~~~~~~~~~~~~~~~~~~~ 171 (179)
T PF01170_consen 107 VDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTT--------------SNRELEKALGLKGWRKRKLYN 171 (179)
T ss_dssp SCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEE--------------SCCCHHHHHTSTTSEEEEEEE
T ss_pred CCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEE--------------CCHHHHHHhcchhhceEEEEE
Confidence 9999999998753 21 2335678888999998 4444433 345677888888887766544
No 171
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.07 E-value=2.3e-09 Score=85.61 Aligned_cols=104 Identities=12% Similarity=-0.048 Sum_probs=79.9
Q ss_pred CCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC----CC-CCeeEEEe
Q 024021 107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC----PT-ELFDLIFD 180 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----~~-~~~D~v~~ 180 (274)
..+.+|||++||+|.++..++..|+ .|+++|.++.+++.+++++...+..++++++.+|+.+.. .. ..||+|+.
T Consensus 48 ~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 48 IQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred cCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 3568999999999999999999887 899999999999999999988876667999999996621 12 24799888
Q ss_pred cccccccChhHHHHHHHHHH--hcccCCcEEEEEE
Q 024021 181 YTFFCAIEPEMRAAWAQKIK--DFLKPDGELITLM 213 (274)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~~~--~~L~pgG~~~~~~ 213 (274)
...+..- ....++..+. .+|+++|.+++..
T Consensus 128 DPPy~~~---~~~~~l~~l~~~~~l~~~~iiv~E~ 159 (189)
T TIGR00095 128 DPPFFNG---ALQALLELCENNWILEDTVLIVVEE 159 (189)
T ss_pred CcCCCCC---cHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 7777542 2234444443 4688888776654
No 172
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=99.07 E-value=5.6e-10 Score=94.20 Aligned_cols=105 Identities=20% Similarity=0.228 Sum_probs=83.1
Q ss_pred CCeEEEEcCCcchhHH----HhhC------CCCeEEEEeCChHHHHHHHHHhhc-----------------------CC-
Q 024021 109 KGRALVPGCGTGYDVV----AMAS------PERYVVGLEISDIAIKKAEELSSS-----------------------LP- 154 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~----~l~~------~~~~v~~vD~~~~~~~~a~~~~~~-----------------------~~- 154 (274)
..+|+..||+||.-.. .+.+ ...+|+|+|+|+.+++.|++-.-. .+
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 3699999999996643 2222 135899999999999999875211 00
Q ss_pred ------CCcceEEEEcccCCC--CCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021 155 ------NAKFVSFLKADFFTW--CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 155 ------~~~~~~~~~~d~~~~--~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 213 (274)
+...|+|...|+.+. .+.+.||+|+|.+++.|++++....+++++.+.|+|||++++..
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 235689999999873 23578999999999999999889999999999999999987754
No 173
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.07 E-value=1.2e-09 Score=92.04 Aligned_cols=126 Identities=23% Similarity=0.164 Sum_probs=91.3
Q ss_pred CCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCC-cceEEEEcccCCCC----CCCCeeEEEec
Q 024021 108 PKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNA-KFVSFLKADFFTWC----PTELFDLIFDY 181 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~----~~~~~D~v~~~ 181 (274)
.+++|||+-|-||.++...+..|+ +|+.||.|..+++.+++++..+++. .+++|+..|+++.. ..++||+|++.
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlD 202 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILD 202 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE-
T ss_pred CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEEC
Confidence 468999999999999999888887 8999999999999999999988874 67999999998722 24689999986
Q ss_pred cc-ccc--cC-hhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCc
Q 024021 182 TF-FCA--IE-PEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQ 242 (274)
Q Consensus 182 ~~-~~~--~~-~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 242 (274)
.+ |.. .. ......++..+.++|+|||.++++..+. .++.+.+.+.+.+++-+
T Consensus 203 PPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~---------~i~~~~l~~~~~~~a~~ 258 (286)
T PF10672_consen 203 PPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSH---------HISPDFLLEAVAEAARE 258 (286)
T ss_dssp -SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--T---------TS-HHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCc---------ccCHHHHHHHHHHhCcc
Confidence 44 211 00 1344678889999999999988776433 34667777777766533
No 174
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.01 E-value=5.8e-09 Score=85.21 Aligned_cols=106 Identities=17% Similarity=0.164 Sum_probs=83.0
Q ss_pred CCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC------CCCCCCeeEEE
Q 024021 108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT------WCPTELFDLIF 179 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~------~~~~~~~D~v~ 179 (274)
.+..+||+|||+|..+..++. +..+++++|.|+.++..|.+|+...++.+++..++-+... ....+++|+++
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllv 227 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLV 227 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEe
Confidence 345899999999999999887 6679999999999999999999998888888888554443 23457899999
Q ss_pred ecccccccCh------------------------hHHHHHHHHHHhcccCCcEEEEEE
Q 024021 180 DYTFFCAIEP------------------------EMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 180 ~~~~~~~~~~------------------------~~~~~~l~~~~~~L~pgG~~~~~~ 213 (274)
++..+..-++ +....+..-+.+.|+|||.+.+..
T Consensus 228 sNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~ 285 (328)
T KOG2904|consen 228 SNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLEL 285 (328)
T ss_pred cCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEe
Confidence 9987643221 112456677789999999888765
No 175
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.01 E-value=4.7e-09 Score=87.51 Aligned_cols=105 Identities=21% Similarity=0.220 Sum_probs=84.1
Q ss_pred CCeEEEEcCCcchhH----HHhhC-------CCCeEEEEeCChHHHHHHHHHhhc-----CC------------------
Q 024021 109 KGRALVPGCGTGYDV----VAMAS-------PERYVVGLEISDIAIKKAEELSSS-----LP------------------ 154 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~----~~l~~-------~~~~v~~vD~~~~~~~~a~~~~~~-----~~------------------ 154 (274)
.-+|.-.||+||.-. +.+.+ ...+|+|+|++..+++.|+.-.-. .+
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 569999999999654 33333 135899999999999999764322 11
Q ss_pred -----CCcceEEEEcccCCCC-CCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021 155 -----NAKFVSFLKADFFTWC-PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 155 -----~~~~~~~~~~d~~~~~-~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 213 (274)
+...|.|...|+.... ..+.||+|+|.+++.+++.+....++.+++..|+|||++++..
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 1235888889988744 6678999999999999999888999999999999999999854
No 176
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.01 E-value=5.5e-09 Score=91.82 Aligned_cols=135 Identities=17% Similarity=0.081 Sum_probs=94.7
Q ss_pred CCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----------------
Q 024021 109 KGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP----------------- 171 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~----------------- 171 (274)
+.+|||++||+|.++..+++...+|+++|.++.+++.+++++..++. .+++|+.+|+.+...
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~ 285 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGI-DNVQIIRMSAEEFTQAMNGVREFNRLKGIDLK 285 (362)
T ss_pred CCeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCC-CcEEEEECCHHHHHHHHhhccccccccccccc
Confidence 35799999999999998888767999999999999999999988776 479999999876211
Q ss_pred CCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCH-HHHHHHHhcCCCcEEEEeecc
Q 024021 172 TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSV-SDYEEVLQPMGFQAISIVDNK 250 (274)
Q Consensus 172 ~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~Gf~~~~~~~~~ 250 (274)
..+||+|+....-..+. ..+++.+.+ |++++++.+.+. +. .++. .|.+ ||++.++...+
T Consensus 286 ~~~~D~v~lDPPR~G~~----~~~l~~l~~---~~~ivyvSC~p~-----------tlarDl~-~L~~-gY~l~~v~~~D 345 (362)
T PRK05031 286 SYNFSTIFVDPPRAGLD----DETLKLVQA---YERILYISCNPE-----------TLCENLE-TLSQ-THKVERFALFD 345 (362)
T ss_pred CCCCCEEEECCCCCCCc----HHHHHHHHc---cCCEEEEEeCHH-----------HHHHHHH-HHcC-CcEEEEEEEcc
Confidence 12589999776643332 344455544 688888877332 32 3344 4444 99998887754
Q ss_pred cccCCccchhHHHHh
Q 024021 251 LAIGPRKGREKLGRW 265 (274)
Q Consensus 251 ~~~~~~~~~~~~~~~ 265 (274)
. ++.-...|.+.++
T Consensus 346 m-FPqT~HvE~v~lL 359 (362)
T PRK05031 346 Q-FPYTHHMECGVLL 359 (362)
T ss_pred c-CCCCCcEEEEEEE
Confidence 3 3333345555444
No 177
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.00 E-value=1.3e-09 Score=86.36 Aligned_cols=108 Identities=23% Similarity=0.171 Sum_probs=82.0
Q ss_pred CCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----CCCCeeEEEe
Q 024021 107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----PTELFDLIFD 180 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~D~v~~ 180 (274)
.++.++||+-||+|.++...+.+|+ +|+.||.++.++...++++...+..+++.++..|..... ...+||+|++
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 5678999999999999999988887 999999999999999999988877677999999976521 4578999999
Q ss_pred cccccccChhHHHHHHHHHH--hcccCCcEEEEEEccC
Q 024021 181 YTFFCAIEPEMRAAWAQKIK--DFLKPDGELITLMFPI 216 (274)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~~~--~~L~pgG~~~~~~~~~ 216 (274)
..++..-. ....+++.+. .+|+++|.+++.....
T Consensus 121 DPPY~~~~--~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 121 DPPYAKGL--YYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp --STTSCH--HHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred CCCcccch--HHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 88876531 1356777776 7999999888866433
No 178
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=99.00 E-value=4.2e-09 Score=87.15 Aligned_cols=146 Identities=20% Similarity=0.159 Sum_probs=95.8
Q ss_pred HhcCCCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCC----------------C---------
Q 024021 102 HQSGALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLP----------------N--------- 155 (274)
Q Consensus 102 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~----------------~--------- 155 (274)
+......+.++||+|||+-.....-+.+-+ +|+..|+.+..++..++.+...+ .
T Consensus 50 f~~g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~ 129 (256)
T PF01234_consen 50 FSSGGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEE 129 (256)
T ss_dssp HHTSSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHH
T ss_pred hCccCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHH
Confidence 333345567999999999544322232333 89999999999987777665432 0
Q ss_pred --Ccce-EEEEcccCCCCC--C-----CCeeEEEeccccccc--ChhHHHHHHHHHHhcccCCcEEEEEEccCCCC--CC
Q 024021 156 --AKFV-SFLKADFFTWCP--T-----ELFDLIFDYTFFCAI--EPEMRAAWAQKIKDFLKPDGELITLMFPISDH--VG 221 (274)
Q Consensus 156 --~~~~-~~~~~d~~~~~~--~-----~~~D~v~~~~~~~~~--~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~--~~ 221 (274)
...| .++.+|+.+..| + ++||+|++..+++.. +.+.....++++.++|||||.+++...-.... .+
T Consensus 130 ~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG 209 (256)
T PF01234_consen 130 KLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVG 209 (256)
T ss_dssp HHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEET
T ss_pred HHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEEC
Confidence 0113 477899987322 1 359999999999886 34677899999999999999998866432211 11
Q ss_pred CC---CcccCHHHHHHHHhcCCCcEEEEe
Q 024021 222 GP---PYKVSVSDYEEVLQPMGFQAISIV 247 (274)
Q Consensus 222 ~~---~~~~~~~~~~~~l~~~Gf~~~~~~ 247 (274)
+. ...++.+.+.+.++++||.++..+
T Consensus 210 ~~~F~~l~l~ee~v~~al~~aG~~i~~~~ 238 (256)
T PF01234_consen 210 GHKFPCLPLNEEFVREALEEAGFDIEDLE 238 (256)
T ss_dssp TEEEE---B-HHHHHHHHHHTTEEEEEEE
T ss_pred CEecccccCCHHHHHHHHHHcCCEEEecc
Confidence 11 223689999999999999999888
No 179
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.99 E-value=8.5e-09 Score=78.18 Aligned_cols=112 Identities=18% Similarity=0.125 Sum_probs=92.1
Q ss_pred HHHhcCCC-CCCeEEEEcCCcchhHHHhhCCCC---eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC------
Q 024021 100 HLHQSGAL-PKGRALVPGCGTGYDVVAMASPER---YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW------ 169 (274)
Q Consensus 100 ~~~~~~~~-~~~~vLDiG~G~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~------ 169 (274)
.+...... .+.-|||+|.|||.++..+++.|. .++++|++++.+....+.. +.++++.+|.++.
T Consensus 39 ~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~------p~~~ii~gda~~l~~~l~e 112 (194)
T COG3963 39 KMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY------PGVNIINGDAFDLRTTLGE 112 (194)
T ss_pred HHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC------CCccccccchhhHHHHHhh
Confidence 34444333 346999999999999999988543 7999999999999998887 4467899998772
Q ss_pred CCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCC
Q 024021 170 CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS 217 (274)
Q Consensus 170 ~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 217 (274)
.....||.|++.-.+-.+|....-++++.+...|.+||.++...+++-
T Consensus 113 ~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYgp~ 160 (194)
T COG3963 113 HKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYGPL 160 (194)
T ss_pred cCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEecCC
Confidence 345679999999888888888888999999999999999999888743
No 180
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=3.7e-09 Score=83.09 Aligned_cols=111 Identities=19% Similarity=0.195 Sum_probs=85.7
Q ss_pred cHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhC----CCCeEEEEeCChHHHHHHHHHhhcCC---------CCcceEE
Q 024021 95 APIIVHLHQSGALPKGRALVPGCGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLP---------NAKFVSF 161 (274)
Q Consensus 95 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~---------~~~~~~~ 161 (274)
+..+.+++.....++.+.||+|+|+|+++..++. .|...+|||.-++.++.+++++...- ...++.+
T Consensus 69 ha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~i 148 (237)
T KOG1661|consen 69 HATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSI 148 (237)
T ss_pred HHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEE
Confidence 4445566665567889999999999999876653 56567999999999999999886543 1356889
Q ss_pred EEcccCC-CCCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021 162 LKADFFT-WCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 162 ~~~d~~~-~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 213 (274)
+.+|... .....+||.|.+-.....+ -+++.+.|++||.+++-.
T Consensus 149 vvGDgr~g~~e~a~YDaIhvGAaa~~~--------pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 149 VVGDGRKGYAEQAPYDAIHVGAAASEL--------PQELLDQLKPGGRLLIPV 193 (237)
T ss_pred EeCCccccCCccCCcceEEEccCcccc--------HHHHHHhhccCCeEEEee
Confidence 9999988 5556789999987544333 367888899999998855
No 181
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.94 E-value=8.3e-09 Score=83.61 Aligned_cols=110 Identities=16% Similarity=0.115 Sum_probs=87.0
Q ss_pred CCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEeccccccc
Q 024021 109 KGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFFCAI 187 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~~~~~~~ 187 (274)
...|.|+|||-+.++. ..-..|+.+|+-+ .+-+++.+|+.+ +.++++.|++++...+..
T Consensus 181 ~~vIaD~GCGEakiA~---~~~~kV~SfDL~a----------------~~~~V~~cDm~~vPl~d~svDvaV~CLSLMg- 240 (325)
T KOG3045|consen 181 NIVIADFGCGEAKIAS---SERHKVHSFDLVA----------------VNERVIACDMRNVPLEDESVDVAVFCLSLMG- 240 (325)
T ss_pred ceEEEecccchhhhhh---ccccceeeeeeec----------------CCCceeeccccCCcCccCcccEEEeeHhhhc-
Confidence 3689999999988776 3345799999843 346788999998 778899999996655433
Q ss_pred ChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024021 188 EPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD 248 (274)
Q Consensus 188 ~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 248 (274)
.++..++.++.++|++||.+++.+... .+.+...+.+.+...||.+.....
T Consensus 241 --tn~~df~kEa~RiLk~gG~l~IAEv~S--------Rf~dv~~f~r~l~~lGF~~~~~d~ 291 (325)
T KOG3045|consen 241 --TNLADFIKEANRILKPGGLLYIAEVKS--------RFSDVKGFVRALTKLGFDVKHKDV 291 (325)
T ss_pred --ccHHHHHHHHHHHhccCceEEEEehhh--------hcccHHHHHHHHHHcCCeeeehhh
Confidence 466789999999999999999988433 334788899999999999877654
No 182
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.94 E-value=5.4e-09 Score=83.67 Aligned_cols=99 Identities=15% Similarity=0.116 Sum_probs=74.6
Q ss_pred CCCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccc
Q 024021 106 ALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTF 183 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~ 183 (274)
..++.+|+|+.||.|.++..+++ .+..|+++|++|.+++..++++..+++.+++..+.+|..+..+...+|-|++..+
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~lp 178 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNLP 178 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--T
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECCh
Confidence 45678999999999999999988 6779999999999999999999999988889999999998666788999997654
Q ss_pred ccccChhHHHHHHHHHHhcccCCcEEE
Q 024021 184 FCAIEPEMRAAWAQKIKDFLKPDGELI 210 (274)
Q Consensus 184 ~~~~~~~~~~~~l~~~~~~L~pgG~~~ 210 (274)
-.. ..++..+..++++||.+-
T Consensus 179 ~~~------~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 179 ESS------LEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp SSG------GGGHHHHHHHEEEEEEEE
T ss_pred HHH------HHHHHHHHHHhcCCcEEE
Confidence 332 246788999999998763
No 183
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.94 E-value=1.8e-08 Score=81.12 Aligned_cols=121 Identities=15% Similarity=0.042 Sum_probs=90.6
Q ss_pred EEEEcCCcchhHHHhhCCCC--eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCC-CeeEEEecccccccC
Q 024021 112 ALVPGCGTGYDVVAMASPER--YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE-LFDLIFDYTFFCAIE 188 (274)
Q Consensus 112 vLDiG~G~G~~~~~l~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~D~v~~~~~~~~~~ 188 (274)
|.||||-.|++..+|++.|. +++++|+++..++.|++++...++.+++++..+|-.+....+ ..|.|+..++-.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMGG--- 77 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMGG--- 77 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-H---
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecCCH---
Confidence 68999999999999999776 899999999999999999999998899999999988755444 489998766644
Q ss_pred hhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024021 189 PEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD 248 (274)
Q Consensus 189 ~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 248 (274)
.....+++.....++....+++.-.. ....++++|.++||.+++-.-
T Consensus 78 -~lI~~ILe~~~~~~~~~~~lILqP~~------------~~~~LR~~L~~~gf~I~~E~l 124 (205)
T PF04816_consen 78 -ELIIEILEAGPEKLSSAKRLILQPNT------------HAYELRRWLYENGFEIIDEDL 124 (205)
T ss_dssp -HHHHHHHHHTGGGGTT--EEEEEESS-------------HHHHHHHHHHTTEEEEEEEE
T ss_pred -HHHHHHHHhhHHHhccCCeEEEeCCC------------ChHHHHHHHHHCCCEEEEeEE
Confidence 34567777777777666666665421 578999999999999987543
No 184
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.91 E-value=1.3e-09 Score=86.74 Aligned_cols=139 Identities=19% Similarity=0.165 Sum_probs=104.9
Q ss_pred CCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEeccccc
Q 024021 108 PKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFFC 185 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~~~~~ 185 (274)
.-..++||||+-|.....+...+. +++.+|.|..|++.++..-. .+ -.+....+|-.. ....+++|+|+++..+|
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qd-p~--i~~~~~v~DEE~Ldf~ens~DLiisSlslH 148 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQD-PS--IETSYFVGDEEFLDFKENSVDLIISSLSLH 148 (325)
T ss_pred hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCC-Cc--eEEEEEecchhcccccccchhhhhhhhhhh
Confidence 346899999999999999988666 89999999999998876532 21 235666777655 45567999999999998
Q ss_pred ccChhHHHHHHHHHHhcccCCcEEEEEEccCCC--------------CCCCCCcc----cCHHHHHHHHhcCCCcEEEEe
Q 024021 186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISD--------------HVGGPPYK----VSVSDYEEVLQPMGFQAISIV 247 (274)
Q Consensus 186 ~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~--------------~~~~~~~~----~~~~~~~~~l~~~Gf~~~~~~ 247 (274)
+.. +++..+.++...|||+|.++...++..- ..+|..-+ ....++..++..+||....+.
T Consensus 149 W~N--dLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m~tvD 226 (325)
T KOG2940|consen 149 WTN--DLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRAGFSMLTVD 226 (325)
T ss_pred hhc--cCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhcCcccceec
Confidence 873 4567889999999999999987766531 12232222 246889999999999987765
Q ss_pred eccc
Q 024021 248 DNKL 251 (274)
Q Consensus 248 ~~~~ 251 (274)
....
T Consensus 227 tDEi 230 (325)
T KOG2940|consen 227 TDEI 230 (325)
T ss_pred ccce
Confidence 5433
No 185
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.90 E-value=2.6e-08 Score=87.30 Aligned_cols=137 Identities=15% Similarity=0.046 Sum_probs=93.7
Q ss_pred CCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCC----------------
Q 024021 109 KGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT---------------- 172 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~---------------- 172 (274)
+.+|||++||+|.++..+++....|+++|+++++++.|+++...++. .+++|+.+|+.+....
T Consensus 198 ~~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 276 (353)
T TIGR02143 198 KGDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANNI-DNVQIIRMSAEEFTQAMNGVREFRRLKGIDLK 276 (353)
T ss_pred CCcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEEcCHHHHHHHHhhccccccccccccc
Confidence 35799999999999999888667999999999999999999988776 3699999999762211
Q ss_pred -CCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeeccc
Q 024021 173 -ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKL 251 (274)
Q Consensus 173 -~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~ 251 (274)
..||+|+....=..+. ..+++.+.+ |++++++.+.+. +...=...|.+ ||++.++...+.
T Consensus 277 ~~~~d~v~lDPPR~G~~----~~~l~~l~~---~~~ivYvsC~p~-----------tlaRDl~~L~~-~Y~l~~v~~~Dm 337 (353)
T TIGR02143 277 SYNCSTIFVDPPRAGLD----PDTCKLVQA---YERILYISCNPE-----------TLKANLEQLSE-THRVERFALFDQ 337 (353)
T ss_pred cCCCCEEEECCCCCCCc----HHHHHHHHc---CCcEEEEEcCHH-----------HHHHHHHHHhc-CcEEEEEEEccc
Confidence 1379999765532222 344455444 788888887332 23233334443 599988877543
Q ss_pred ccCCccchhHHHHhh
Q 024021 252 AIGPRKGREKLGRWK 266 (274)
Q Consensus 252 ~~~~~~~~~~~~~~~ 266 (274)
++.-+..|++.++.
T Consensus 338 -FP~T~HvE~v~lL~ 351 (353)
T TIGR02143 338 -FPYTHHMECGVLLE 351 (353)
T ss_pred -CCCCCcEEEEEEEE
Confidence 33333455555443
No 186
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.90 E-value=1.5e-08 Score=86.31 Aligned_cols=89 Identities=17% Similarity=0.178 Sum_probs=70.8
Q ss_pred HHHHHhcCC-CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCee
Q 024021 98 IVHLHQSGA-LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFD 176 (274)
Q Consensus 98 ~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D 176 (274)
+..++.... .++.+|||||||+|.++..+++.+.+++++|+++.+++.+++++...+..++++++.+|+.+... ..||
T Consensus 25 ~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~-~~~d 103 (294)
T PTZ00338 25 LDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF-PYFD 103 (294)
T ss_pred HHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc-cccC
Confidence 444444333 35579999999999999999988889999999999999999988765544689999999987432 3689
Q ss_pred EEEeccccccc
Q 024021 177 LIFDYTFFCAI 187 (274)
Q Consensus 177 ~v~~~~~~~~~ 187 (274)
.|+++..++.-
T Consensus 104 ~VvaNlPY~Is 114 (294)
T PTZ00338 104 VCVANVPYQIS 114 (294)
T ss_pred EEEecCCcccC
Confidence 99988776643
No 187
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.89 E-value=2.1e-09 Score=82.82 Aligned_cols=75 Identities=21% Similarity=0.345 Sum_probs=58.4
Q ss_pred eEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCC---C-CeeEEEeccccc
Q 024021 111 RALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT---E-LFDLIFDYTFFC 185 (274)
Q Consensus 111 ~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~---~-~~D~v~~~~~~~ 185 (274)
.|+|+.||.|.+++++++...+|+++|+++..++.|+.++...|..++++++.+|+.+.... . .+|+|+++.++.
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSPPWG 80 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSPPWG 80 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE---BS
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECCCCC
Confidence 68999999999999999998899999999999999999999999888999999999884322 2 289999987765
No 188
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.89 E-value=7.4e-08 Score=77.13 Aligned_cols=111 Identities=22% Similarity=0.265 Sum_probs=89.2
Q ss_pred HHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC---
Q 024021 96 PIIVHLHQSGALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--- 169 (274)
Q Consensus 96 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--- 169 (274)
..+..+++ ...++++||+|.=||+.+..++. .+.+|+++|+++...+.+.+..+..+...++++++++..+.
T Consensus 63 ~fl~~li~--~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~ 140 (237)
T KOG1663|consen 63 QFLQMLIR--LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDE 140 (237)
T ss_pred HHHHHHHH--HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHH
Confidence 33445555 34578999999999999987776 67899999999999999999999999999999999998762
Q ss_pred ----CCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021 170 ----CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 170 ----~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 213 (274)
...++||++|. .+ +......+.+++.+++++||+|++-.
T Consensus 141 l~~~~~~~tfDfaFv----Da-dK~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 141 LLADGESGTFDFAFV----DA-DKDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred HHhcCCCCceeEEEE----cc-chHHHHHHHHHHHhhcccccEEEEec
Confidence 23568999993 22 23444588899999999999998844
No 189
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.88 E-value=1.9e-08 Score=82.10 Aligned_cols=102 Identities=25% Similarity=0.207 Sum_probs=83.6
Q ss_pred CeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC----CCCCCCeeEEEeccc
Q 024021 110 GRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLIFDYTF 183 (274)
Q Consensus 110 ~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~----~~~~~~~D~v~~~~~ 183 (274)
..+||||||.|.++..+|+ +...++|||+....+..|...+...++. |+.+++.|+.. ..++++.|-|+.++.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 5899999999999999987 6779999999999999999999888753 89999999977 445558999987654
Q ss_pred ccccChh-H------HHHHHHHHHhcccCCcEEEEEE
Q 024021 184 FCAIEPE-M------RAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 184 ~~~~~~~-~------~~~~l~~~~~~L~pgG~~~~~~ 213 (274)
=- ++.. . ...+++.+.+.|+|||.+.+.+
T Consensus 129 DP-WpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 129 DP-WPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred CC-CCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 22 2211 0 1578999999999999999876
No 190
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.86 E-value=5.6e-08 Score=79.53 Aligned_cols=137 Identities=14% Similarity=0.097 Sum_probs=84.5
Q ss_pred HHHHHhcC--CCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHH-HHHHhhcCCCCcce-EEEEcccCC----
Q 024021 98 IVHLHQSG--ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKK-AEELSSSLPNAKFV-SFLKADFFT---- 168 (274)
Q Consensus 98 ~~~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~-a~~~~~~~~~~~~~-~~~~~d~~~---- 168 (274)
+..++... ..++.+|||+|||+|.++..+++.|+ +|+++|+++.++.. .+++. ++ .+...|+..
T Consensus 63 L~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~-------~v~~~~~~ni~~~~~~ 135 (228)
T TIGR00478 63 LKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDE-------RVKVLERTNIRYVTPA 135 (228)
T ss_pred HHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCC-------CeeEeecCCcccCCHh
Confidence 44444433 24567999999999999999999865 89999999987765 32221 22 223333332
Q ss_pred -CC-CCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCC------CCC-----CcccCHHHHHHH
Q 024021 169 -WC-PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHV------GGP-----PYKVSVSDYEEV 235 (274)
Q Consensus 169 -~~-~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~------~~~-----~~~~~~~~~~~~ 235 (274)
.. .-..+|+++++.. .++..+.++|+| |.+++..-+..+.. .|. -+....+++...
T Consensus 136 ~~~~d~~~~DvsfiS~~----------~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~ 204 (228)
T TIGR00478 136 DIFPDFATFDVSFISLI----------SILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDK 204 (228)
T ss_pred HcCCCceeeeEEEeehH----------hHHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHH
Confidence 11 1125676664332 346788999999 87776553322110 010 011235677788
Q ss_pred HhcCCCcEEEEeecccc
Q 024021 236 LQPMGFQAISIVDNKLA 252 (274)
Q Consensus 236 l~~~Gf~~~~~~~~~~~ 252 (274)
+.+.||.+..+...+..
T Consensus 205 ~~~~~~~~~~~~~s~i~ 221 (228)
T TIGR00478 205 GESPDFQEKKIIFSLTK 221 (228)
T ss_pred HHcCCCeEeeEEECCCC
Confidence 88899999888775443
No 191
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.84 E-value=7.5e-08 Score=85.97 Aligned_cols=126 Identities=20% Similarity=0.216 Sum_probs=98.9
Q ss_pred CCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC----CCCeeEEEeccc
Q 024021 108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP----TELFDLIFDYTF 183 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~D~v~~~~~ 183 (274)
++.++||+=||.|.+++.+++...+|+|+|+++++++.|+++++.++..+ ++|..++..+..+ ...+|.|+....
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N-~~f~~~~ae~~~~~~~~~~~~d~VvvDPP 371 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDN-VEFIAGDAEEFTPAWWEGYKPDVVVVDPP 371 (432)
T ss_pred CCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCCc-EEEEeCCHHHHhhhccccCCCCEEEECCC
Confidence 44799999999999999999999999999999999999999999998765 9999999988332 247899996544
Q ss_pred ccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024021 184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNK 250 (274)
Q Consensus 184 ~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 250 (274)
=..++ ..+++.+.+ ++|-.++++.+.+. |...-...|...||.+.++...+
T Consensus 372 R~G~~----~~~lk~l~~-~~p~~IvYVSCNP~-----------TlaRDl~~L~~~gy~i~~v~~~D 422 (432)
T COG2265 372 RAGAD----REVLKQLAK-LKPKRIVYVSCNPA-----------TLARDLAILASTGYEIERVQPFD 422 (432)
T ss_pred CCCCC----HHHHHHHHh-cCCCcEEEEeCCHH-----------HHHHHHHHHHhCCeEEEEEEEec
Confidence 33332 245555555 78888999988444 56666778888899877776543
No 192
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.84 E-value=2.9e-08 Score=83.40 Aligned_cols=86 Identities=12% Similarity=0.076 Sum_probs=68.3
Q ss_pred HHHHHHhcCC-CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCe
Q 024021 97 IIVHLHQSGA-LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELF 175 (274)
Q Consensus 97 ~~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 175 (274)
.+..+++... .++.+|||+|||+|.++..+++.+.+++++|+++.+++.++++.... ++++++.+|+.+... ..|
T Consensus 17 ~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~~---~~v~ii~~D~~~~~~-~~~ 92 (258)
T PRK14896 17 VVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIAA---GNVEIIEGDALKVDL-PEF 92 (258)
T ss_pred HHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhccC---CCEEEEEeccccCCc-hhc
Confidence 3444444333 35679999999999999999998889999999999999999887542 579999999987432 348
Q ss_pred eEEEecccccc
Q 024021 176 DLIFDYTFFCA 186 (274)
Q Consensus 176 D~v~~~~~~~~ 186 (274)
|.|+++..++.
T Consensus 93 d~Vv~NlPy~i 103 (258)
T PRK14896 93 NKVVSNLPYQI 103 (258)
T ss_pred eEEEEcCCccc
Confidence 99999888653
No 193
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.84 E-value=8.1e-08 Score=81.29 Aligned_cols=85 Identities=15% Similarity=0.101 Sum_probs=65.7
Q ss_pred HHHHHHhcCC-CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCC-
Q 024021 97 IIVHLHQSGA-LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTEL- 174 (274)
Q Consensus 97 ~~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~- 174 (274)
.+..+++... .++.+|||+|||+|.++..+++.+.+|+++|+++.+++.++++... ++++++.+|+.+.....-
T Consensus 30 i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~~~~~~~ 105 (272)
T PRK00274 30 ILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKVDLSELQ 105 (272)
T ss_pred HHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcCCHHHcC
Confidence 3444554433 3557999999999999999998777999999999999999987642 479999999987533221
Q ss_pred eeEEEeccccc
Q 024021 175 FDLIFDYTFFC 185 (274)
Q Consensus 175 ~D~v~~~~~~~ 185 (274)
+|.|+++..+.
T Consensus 106 ~~~vv~NlPY~ 116 (272)
T PRK00274 106 PLKVVANLPYN 116 (272)
T ss_pred cceEEEeCCcc
Confidence 58888876654
No 194
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.84 E-value=4e-08 Score=77.79 Aligned_cols=128 Identities=19% Similarity=0.268 Sum_probs=96.5
Q ss_pred CeEEEEcCCcchhHHHhh--CCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccccc
Q 024021 110 GRALVPGCGTGYDVVAMA--SPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAI 187 (274)
Q Consensus 110 ~~vLDiG~G~G~~~~~l~--~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~ 187 (274)
.+++|+|+|.|.-++.++ .+..+++.+|....-+...+......++. |++++.+.+.+.....+||+|++..+-.
T Consensus 50 ~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~~~~~~~fd~v~aRAv~~-- 126 (184)
T PF02527_consen 50 KKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLS-NVEVINGRAEEPEYRESFDVVTARAVAP-- 126 (184)
T ss_dssp SEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-S-SEEEEES-HHHTTTTT-EEEEEEESSSS--
T ss_pred ceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCC-CEEEEEeeecccccCCCccEEEeehhcC--
Confidence 389999999998887654 58889999999999999998888777774 6999999988755667899999988743
Q ss_pred ChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecccc
Q 024021 188 EPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLA 252 (274)
Q Consensus 188 ~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~ 252 (274)
...+++-+...+++||.+++.- |+...-..++....++..|.+...+.....+
T Consensus 127 ----l~~l~~~~~~~l~~~G~~l~~K--------G~~~~~El~~~~~~~~~~~~~~~~v~~~~~~ 179 (184)
T PF02527_consen 127 ----LDKLLELARPLLKPGGRLLAYK--------GPDAEEELEEAKKAWKKLGLKVLSVPEFELP 179 (184)
T ss_dssp ----HHHHHHHHGGGEEEEEEEEEEE--------SS--HHHHHTHHHHHHCCCEEEEEEEEEE-T
T ss_pred ----HHHHHHHHHHhcCCCCEEEEEc--------CCChHHHHHHHHhHHHHhCCEEeeeccccCC
Confidence 2467788999999999998876 3333324566677778888888777665443
No 195
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.83 E-value=1e-07 Score=74.66 Aligned_cols=108 Identities=21% Similarity=0.129 Sum_probs=83.8
Q ss_pred CCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC----CCCCCeeEEEec
Q 024021 107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW----CPTELFDLIFDY 181 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~D~v~~~ 181 (274)
..+.++||+-+|+|.++...+.+|+ .++.+|.+..++...++|....+...++.++..|.... ...++||+|+..
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflD 121 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLD 121 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeC
Confidence 5678999999999999999999887 89999999999999999998887778899999998852 222359999998
Q ss_pred ccccc-cChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021 182 TFFCA-IEPEMRAAWAQKIKDFLKPDGELITLMF 214 (274)
Q Consensus 182 ~~~~~-~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 214 (274)
.+++. +-+.......-.-..+|+|+|.+++...
T Consensus 122 PPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 122 PPYAKGLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred CCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 88772 1111111112224578999999988663
No 196
>PRK04148 hypothetical protein; Provisional
Probab=98.83 E-value=5.4e-08 Score=72.32 Aligned_cols=94 Identities=16% Similarity=0.179 Sum_probs=69.6
Q ss_pred CCCeEEEEcCCcch-hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC--CCCeeEEEecccc
Q 024021 108 PKGRALVPGCGTGY-DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--TELFDLIFDYTFF 184 (274)
Q Consensus 108 ~~~~vLDiG~G~G~-~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~D~v~~~~~~ 184 (274)
++.++||+|||+|. .+..|++.|..|+++|+++.+++.++++. ++++.+|++++.. -..+|+|++...
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~--------~~~v~dDlf~p~~~~y~~a~liysirp- 86 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKLG--------LNAFVDDLFNPNLEIYKNAKLIYSIRP- 86 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhC--------CeEEECcCCCCCHHHHhcCCEEEEeCC-
Confidence 35789999999996 88888889999999999999999998774 7899999998543 367999997544
Q ss_pred cccChhHHHHHHHHHHhcccCCcEEEEEEccC
Q 024021 185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (274)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 216 (274)
+.++...+-++.+.+ |.-+++...+.
T Consensus 87 ----p~el~~~~~~la~~~--~~~~~i~~l~~ 112 (134)
T PRK04148 87 ----PRDLQPFILELAKKI--NVPLIIKPLSG 112 (134)
T ss_pred ----CHHHHHHHHHHHHHc--CCCEEEEcCCC
Confidence 233344445555544 34466655444
No 197
>PLN02823 spermine synthase
Probab=98.83 E-value=4.4e-08 Score=84.78 Aligned_cols=105 Identities=16% Similarity=0.127 Sum_probs=79.3
Q ss_pred CCCeEEEEcCCcchhHHHhhC-C-CCeEEEEeCChHHHHHHHHHhhcCC---CCcceEEEEcccCCC--CCCCCeeEEEe
Q 024021 108 PKGRALVPGCGTGYDVVAMAS-P-ERYVVGLEISDIAIKKAEELSSSLP---NAKFVSFLKADFFTW--CPTELFDLIFD 180 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~-~-~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~~~~~~~d~~~~--~~~~~~D~v~~ 180 (274)
.+.+||.+|+|.|..+..+++ . ..+++.+|+++++++.|++.++... ..++++++.+|..+. ...++||+|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 457999999999999998877 3 3589999999999999999886432 247899999999883 23468999997
Q ss_pred ccccccc---Chh--HHHHHHH-HHHhcccCCcEEEEEE
Q 024021 181 YTFFCAI---EPE--MRAAWAQ-KIKDFLKPDGELITLM 213 (274)
Q Consensus 181 ~~~~~~~---~~~--~~~~~l~-~~~~~L~pgG~~~~~~ 213 (274)
... ... +.. ....+++ .+.+.|+|||++++..
T Consensus 183 D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 183 DLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred cCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 632 111 110 1246777 8899999999987643
No 198
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.81 E-value=9e-08 Score=82.22 Aligned_cols=130 Identities=15% Similarity=0.057 Sum_probs=104.6
Q ss_pred CCCCeEEEEcCCcchhHHHhhCCCCe-EEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCC-CCeeEEEecccc
Q 024021 107 LPKGRALVPGCGTGYDVVAMASPERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT-ELFDLIFDYTFF 184 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~D~v~~~~~~ 184 (274)
.++.+|||.-||.|.+++.+++.|.. |+++|++|.++...++++..++..+.+..+.+|.....+. +.+|-|+...+-
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p~ 266 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLPK 266 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCCC
Confidence 44789999999999999999997774 9999999999999999999999888899999999986555 789999976553
Q ss_pred cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEE
Q 024021 185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISI 246 (274)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 246 (274)
. ...++....+.+++||.+-..++...+.... ....++.......|++....
T Consensus 267 ~------a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~----~~~~~i~~~~~~~~~~~~v~ 318 (341)
T COG2520 267 S------AHEFLPLALELLKDGGIIHYYEFVPEDDIEE----RPEKRIKSAARKGGYKVEVL 318 (341)
T ss_pred c------chhhHHHHHHHhhcCcEEEEEeccchhhccc----chHHHHHHHHhhccCcceEE
Confidence 2 2457788889999999998888766543221 24577888888887655443
No 199
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.80 E-value=1.1e-07 Score=79.65 Aligned_cols=87 Identities=15% Similarity=0.118 Sum_probs=66.4
Q ss_pred cHHHHHHHhcCC-CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCC
Q 024021 95 APIIVHLHQSGA-LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE 173 (274)
Q Consensus 95 ~~~~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 173 (274)
...+..+++... .++.+|||+|||+|.++..+++.+..++++|+++.+++.++.+... ..+++++.+|+.+....
T Consensus 15 ~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~~~~~- 90 (253)
T TIGR00755 15 ESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALKVDLP- 90 (253)
T ss_pred HHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhcCChh-
Confidence 334455555443 3457999999999999999999888899999999999999988743 25799999999874432
Q ss_pred Cee---EEEeccccc
Q 024021 174 LFD---LIFDYTFFC 185 (274)
Q Consensus 174 ~~D---~v~~~~~~~ 185 (274)
.+| +|+++..++
T Consensus 91 ~~d~~~~vvsNlPy~ 105 (253)
T TIGR00755 91 DFPKQLKVVSNLPYN 105 (253)
T ss_pred HcCCcceEEEcCChh
Confidence 466 777765544
No 200
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.79 E-value=1e-07 Score=76.02 Aligned_cols=119 Identities=18% Similarity=0.222 Sum_probs=91.1
Q ss_pred CeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CC---CCCCeeEEEeccccc
Q 024021 110 GRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WC---PTELFDLIFDYTFFC 185 (274)
Q Consensus 110 ~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~---~~~~~D~v~~~~~~~ 185 (274)
.++|||||=+..+...- ..-..|+.||+++. ...+.+.|+.+ +. +.++||+|.++.++.
T Consensus 53 lrlLEVGals~~N~~s~-~~~fdvt~IDLns~----------------~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLN 115 (219)
T PF11968_consen 53 LRLLEVGALSTDNACST-SGWFDVTRIDLNSQ----------------HPGILQQDFMERPLPKNESEKFDVISLSLVLN 115 (219)
T ss_pred ceEEeecccCCCCcccc-cCceeeEEeecCCC----------------CCCceeeccccCCCCCCcccceeEEEEEEEEe
Confidence 59999999765544332 13347999999763 35578888887 33 356899999999999
Q ss_pred ccCh-hHHHHHHHHHHhcccCCcE-----EEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024021 186 AIEP-EMRAAWAQKIKDFLKPDGE-----LITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD 248 (274)
Q Consensus 186 ~~~~-~~~~~~l~~~~~~L~pgG~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 248 (274)
++|. ..+-.++.++.+.|+|+|. ++++...... .....++.+.+.++|+..||..++.+.
T Consensus 116 fVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv---~NSRy~~~~~l~~im~~LGf~~~~~~~ 181 (219)
T PF11968_consen 116 FVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCV---TNSRYMTEERLREIMESLGFTRVKYKK 181 (219)
T ss_pred eCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHh---hcccccCHHHHHHHHHhCCcEEEEEEe
Confidence 9974 5788999999999999999 8887654432 122335889999999999999988754
No 201
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=1.3e-07 Score=77.29 Aligned_cols=135 Identities=21% Similarity=0.158 Sum_probs=99.4
Q ss_pred HHHHHhcCCCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC---CC
Q 024021 98 IVHLHQSGALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---CP 171 (274)
Q Consensus 98 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~---~~ 171 (274)
+..+++ ..|+.+|+|-|+|+|.++.++++ +-.+++.+|+.....+.|.+.+...++.+++++.+-|+... ..
T Consensus 97 I~~~L~--i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~k 174 (314)
T KOG2915|consen 97 ILSMLE--IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIK 174 (314)
T ss_pred HHHHhc--CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcccc
Confidence 444444 46778999999999999999988 44699999999999999999999999999999999999872 22
Q ss_pred CCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024021 172 TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNK 250 (274)
Q Consensus 172 ~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 250 (274)
...+|.|+.. -+.....+..+.++|+.+|. .++.|++.- --.+.-.+.|.+.||..+...+..
T Consensus 175 s~~aDaVFLD-------lPaPw~AiPha~~~lk~~g~-r~csFSPCI--------EQvqrtce~l~~~gf~~i~~vEv~ 237 (314)
T KOG2915|consen 175 SLKADAVFLD-------LPAPWEAIPHAAKILKDEGG-RLCSFSPCI--------EQVQRTCEALRSLGFIEIETVEVL 237 (314)
T ss_pred ccccceEEEc-------CCChhhhhhhhHHHhhhcCc-eEEeccHHH--------HHHHHHHHHHHhCCCceEEEEEee
Confidence 4679999842 22334567778888988774 222332221 124456677888899887765543
No 202
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.74 E-value=1.1e-07 Score=80.37 Aligned_cols=139 Identities=14% Similarity=0.127 Sum_probs=95.1
Q ss_pred CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecc
Q 024021 106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYT 182 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~ 182 (274)
...+.+|||+|||+|..+-.+.+ .-.+++++|.|+.+++.++....................+..+..+.|+|++++
T Consensus 31 ~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DLvi~s~ 110 (274)
T PF09243_consen 31 DFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPDDLVIASY 110 (274)
T ss_pred CCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCCcEEEEeh
Confidence 34568999999999977655544 234899999999999999987755421111111111111122223349999999
Q ss_pred cccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecccc
Q 024021 183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLA 252 (274)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~ 252 (274)
++.-++...+..+++.+.+.+.+ .+++++.+.... +-...+.++.+.+.|+.++--+.....
T Consensus 111 ~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~G------f~~i~~aR~~l~~~~~~v~APCph~~~ 172 (274)
T PF09243_consen 111 VLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPAG------FRRIAEARDQLLEKGAHVVAPCPHDGP 172 (274)
T ss_pred hhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChHH------HHHHHHHHHHHhhCCCceECCCccCCC
Confidence 99999878888899999888876 888887544321 124678888888889888776665433
No 203
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.73 E-value=7e-07 Score=76.68 Aligned_cols=105 Identities=10% Similarity=-0.034 Sum_probs=78.8
Q ss_pred CCCeEEEEcCCcchhHHHhhC------CCCeEEEEeCChHHHHHHHHHhh-cCCCCcceEEEEcccCCC---CC----CC
Q 024021 108 PKGRALVPGCGTGYDVVAMAS------PERYVVGLEISDIAIKKAEELSS-SLPNAKFVSFLKADFFTW---CP----TE 173 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~------~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~~~~~~~~d~~~~---~~----~~ 173 (274)
++..++|+|||.|.=+..|++ ....++++|+|.++++.+..++. ..--.-.+.-+.+|+.+. .+ ..
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~ 155 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRS 155 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccC
Confidence 446899999999987655443 34689999999999999999887 332112344488888662 21 23
Q ss_pred CeeEEEecc-cccccChhHHHHHHHHHHh-cccCCcEEEEE
Q 024021 174 LFDLIFDYT-FFCAIEPEMRAAWAQKIKD-FLKPDGELITL 212 (274)
Q Consensus 174 ~~D~v~~~~-~~~~~~~~~~~~~l~~~~~-~L~pgG~~~~~ 212 (274)
...+++..+ .++.++++....+++.+++ .|+|||.+++.
T Consensus 156 ~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 156 RPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIG 196 (319)
T ss_pred CccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEe
Confidence 456777664 8899988888899999999 99999998883
No 204
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.73 E-value=1.4e-07 Score=78.53 Aligned_cols=129 Identities=18% Similarity=0.095 Sum_probs=89.4
Q ss_pred CCCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcCC---CCcceEEEEcccCCC--CCCC-CeeEE
Q 024021 107 LPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLP---NAKFVSFLKADFFTW--CPTE-LFDLI 178 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~~~~~~~d~~~~--~~~~-~~D~v 178 (274)
..+.+||=||.|.|..+..+.+. ..+++++|+++.+++.|++.++... ..++++++.+|.... ...+ +||+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 35789999999999999999883 3599999999999999999776421 246899999999872 2233 89999
Q ss_pred EecccccccChh--HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCC
Q 024021 179 FDYTFFCAIEPE--MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGF 241 (274)
Q Consensus 179 ~~~~~~~~~~~~--~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf 241 (274)
+....-...+.. ....+++.+.+.|+|||++++...+.... .-....+.+.++....
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~------~~~~~~i~~tl~~~F~ 213 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLH------PELFKSILKTLRSVFP 213 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTT------HHHHHHHHHHHHTTSS
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccc------hHHHHHHHHHHHHhCC
Confidence 974332111111 13578899999999999999876322111 0124556677777755
No 205
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.71 E-value=1.2e-08 Score=90.35 Aligned_cols=132 Identities=12% Similarity=0.145 Sum_probs=84.5
Q ss_pred CeEEEEcCCcchhHHHhhCCCCeEEEE---eCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccc
Q 024021 110 GRALVPGCGTGYDVVAMASPERYVVGL---EISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA 186 (274)
Q Consensus 110 ~~vLDiG~G~G~~~~~l~~~~~~v~~v---D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~ 186 (274)
..+||+|||+|.++.+|.+.+..+..+ |..+.++++|.++.-.. +--+.+.-.-+.|.+.||+|.|+.++..
T Consensus 119 R~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa-----~~~~~~s~rLPfp~~~fDmvHcsrc~i~ 193 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPA-----MIGVLGSQRLPFPSNAFDMVHCSRCLIP 193 (506)
T ss_pred EEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcch-----hhhhhccccccCCccchhhhhccccccc
Confidence 588999999999999999987654443 34455666665553111 1111122222778899999999998877
Q ss_pred cChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024021 187 IEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD 248 (274)
Q Consensus 187 ~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 248 (274)
+.... -.++-++.|+|+|||++++...+.... ......-....+.++.+..-|+.+....
T Consensus 194 W~~~~-g~~l~evdRvLRpGGyfv~S~ppv~~r-~~~~~~~~~~~~~~l~~~lCW~~va~~~ 253 (506)
T PF03141_consen 194 WHPND-GFLLFEVDRVLRPGGYFVLSGPPVYQR-TDEDLEEEWNAMEDLAKSLCWKKVAEKG 253 (506)
T ss_pred chhcc-cceeehhhhhhccCceEEecCCccccc-chHHHHHHHHHHHHHHHHHHHHHheeeC
Confidence 75433 357889999999999999876554311 0000111345566666666666655444
No 206
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.68 E-value=3.3e-08 Score=73.20 Aligned_cols=79 Identities=19% Similarity=0.294 Sum_probs=66.9
Q ss_pred CCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-CCCeeEEEeccc
Q 024021 106 ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-TELFDLIFDYTF 183 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~ 183 (274)
+..+++++|+|||+|.+.....-.+. .|.|+|++|++++.+.+|.++..+ +++++++|+.++.+ .+.||.++.+..
T Consensus 46 diEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv--qidlLqcdildle~~~g~fDtaviNpp 123 (185)
T KOG3420|consen 46 DIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV--QIDLLQCDILDLELKGGIFDTAVINPP 123 (185)
T ss_pred cccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh--hhheeeeeccchhccCCeEeeEEecCC
Confidence 46789999999999999977777655 899999999999999999987653 47999999998544 367999999988
Q ss_pred ccc
Q 024021 184 FCA 186 (274)
Q Consensus 184 ~~~ 186 (274)
|+-
T Consensus 124 FGT 126 (185)
T KOG3420|consen 124 FGT 126 (185)
T ss_pred CCc
Confidence 764
No 207
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.65 E-value=8.9e-08 Score=84.49 Aligned_cols=98 Identities=14% Similarity=0.015 Sum_probs=77.9
Q ss_pred CCeEEEEcCCcchhHHHhhC-CC-CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-CCCeeEEEeccccc
Q 024021 109 KGRALVPGCGTGYDVVAMAS-PE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-TELFDLIFDYTFFC 185 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l~~-~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~~~ 185 (274)
+.+|||++||+|..++.++. .+ ..|+++|+++.+++.+++++..++.. ++++..+|+..... .+.||+|+.... .
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~-~~~v~~~Da~~~l~~~~~fD~V~lDP~-G 135 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLE-NEKVFNKDANALLHEERKFDVVDIDPF-G 135 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEhhhHHHHHhhcCCCCEEEECCC-C
Confidence 35899999999999998876 34 38999999999999999999887653 57789999876443 467999997643 2
Q ss_pred ccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021 186 AIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 186 ~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 213 (274)
.+ ..+++...+.+++||++++..
T Consensus 136 -s~----~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 136 -SP----APFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred -Cc----HHHHHHHHHHhcCCCEEEEEe
Confidence 22 356777777789999999974
No 208
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.65 E-value=2.6e-07 Score=75.61 Aligned_cols=88 Identities=22% Similarity=0.231 Sum_probs=72.7
Q ss_pred HHHHHhcC-CCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCee
Q 024021 98 IVHLHQSG-ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFD 176 (274)
Q Consensus 98 ~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D 176 (274)
+.+++... ..++..|||+|.|||.++..+.+.|..|+++|++|.++....+++.....+.+.+++.+|+.+... ..||
T Consensus 47 ~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~-P~fd 125 (315)
T KOG0820|consen 47 IDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL-PRFD 125 (315)
T ss_pred HHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC-cccc
Confidence 33444433 345689999999999999999999999999999999999999999887777899999999998542 2489
Q ss_pred EEEecccccc
Q 024021 177 LIFDYTFFCA 186 (274)
Q Consensus 177 ~v~~~~~~~~ 186 (274)
.++++-.+.-
T Consensus 126 ~cVsNlPyqI 135 (315)
T KOG0820|consen 126 GCVSNLPYQI 135 (315)
T ss_pred eeeccCCccc
Confidence 9998766653
No 209
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.65 E-value=2.3e-07 Score=74.73 Aligned_cols=132 Identities=17% Similarity=0.170 Sum_probs=102.8
Q ss_pred CCeEEEEcCCcchhHHHhh--CCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCC-eeEEEeccccc
Q 024021 109 KGRALVPGCGTGYDVVAMA--SPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTEL-FDLIFDYTFFC 185 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l~--~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~D~v~~~~~~~ 185 (274)
+.+++|||+|.|.-+..++ .+..+++-+|....-+.+.+......++ +|++++++.+.+.....+ ||+|.+..+-.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L-~nv~i~~~RaE~~~~~~~~~D~vtsRAva~ 146 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGL-ENVEIVHGRAEEFGQEKKQYDVVTSRAVAS 146 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCC-CCeEEehhhHhhcccccccCcEEEeehccc
Confidence 5799999999999988755 5777899999999999999888877766 569999999988655444 99999987743
Q ss_pred ccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecccccCC
Q 024021 186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIGP 255 (274)
Q Consensus 186 ~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~ 255 (274)
...+++-...++++||.+++.-+... .-...+........|+.+..+.....+...
T Consensus 147 ------L~~l~e~~~pllk~~g~~~~~k~~~~--------~~e~~e~~~a~~~~~~~~~~~~~~~~p~~~ 202 (215)
T COG0357 147 ------LNVLLELCLPLLKVGGGFLAYKGLAG--------KDELPEAEKAILPLGGQVEKVFSLTVPELD 202 (215)
T ss_pred ------hHHHHHHHHHhcccCCcchhhhHHhh--------hhhHHHHHHHHHhhcCcEEEEEEeecCCCC
Confidence 24567888999999998765442221 114567788888889999998887766654
No 210
>PRK00536 speE spermidine synthase; Provisional
Probab=98.62 E-value=1.1e-06 Score=73.21 Aligned_cols=122 Identities=14% Similarity=0.027 Sum_probs=85.4
Q ss_pred CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCC---CCcceEEEEcccCCCCCCCCeeEEEeccc
Q 024021 107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLP---NAKFVSFLKADFFTWCPTELFDLIFDYTF 183 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~D~v~~~~~ 183 (274)
..+++||=+|.|.|..++.+++-..+|+.||+++++++.+++.++... ..+|++++.. +. ....++||+|+.-..
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~-~~~~~~fDVIIvDs~ 148 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LL-DLDIKKYDLIICLQE 148 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hh-hccCCcCCEEEEcCC
Confidence 446899999999999999999844599999999999999999766421 2467777752 22 222368999997643
Q ss_pred ccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCccc--CHHHHHHHHhcCCCcEEEE
Q 024021 184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKV--SVSDYEEVLQPMGFQAISI 246 (274)
Q Consensus 184 ~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~Gf~~~~~ 246 (274)
+ + ..+.+.+.+.|+|||+++.-. +.++.. ....+.+.+++ .|..+..
T Consensus 149 ~----~---~~fy~~~~~~L~~~Gi~v~Qs--------~sp~~~~~~~~~i~~~l~~-~F~~v~~ 197 (262)
T PRK00536 149 P----D---IHKIDGLKRMLKEDGVFISVA--------KHPLLEHVSMQNALKNMGD-FFSIAMP 197 (262)
T ss_pred C----C---hHHHHHHHHhcCCCcEEEECC--------CCcccCHHHHHHHHHHHHh-hCCceEE
Confidence 2 1 356788999999999998854 223321 12445555555 5775443
No 211
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.59 E-value=1.1e-06 Score=77.02 Aligned_cols=142 Identities=18% Similarity=0.209 Sum_probs=85.3
Q ss_pred hcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC------------
Q 024021 103 QSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC------------ 170 (274)
Q Consensus 103 ~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~------------ 170 (274)
+.....+..|||+-||.|.++..++....+|+|+|.++++++.|+.++..++. .+++|+.++..+..
T Consensus 191 ~~l~~~~~~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~N~i-~n~~f~~~~~~~~~~~~~~~r~~~~~ 269 (352)
T PF05958_consen 191 EWLDLSKGDVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKLNGI-DNVEFIRGDAEDFAKALAKAREFNRL 269 (352)
T ss_dssp HHCTT-TTEEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHHTT---SEEEEE--SHHCCCHHCCS-GGTTG
T ss_pred HHhhcCCCcEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHHcCC-CcceEEEeeccchhHHHHhhHHHHhh
Confidence 33444445899999999999999999999999999999999999999998876 57999987654311
Q ss_pred -----CCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEE
Q 024021 171 -----PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAIS 245 (274)
Q Consensus 171 -----~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 245 (274)
....+|+|+...+=..++ ..+++.+.+ +.-++++.+.+. +...=...|.+ ||++..
T Consensus 270 ~~~~~~~~~~d~vilDPPR~G~~----~~~~~~~~~---~~~ivYvSCnP~-----------tlaRDl~~L~~-~y~~~~ 330 (352)
T PF05958_consen 270 KGIDLKSFKFDAVILDPPRAGLD----EKVIELIKK---LKRIVYVSCNPA-----------TLARDLKILKE-GYKLEK 330 (352)
T ss_dssp GGS-GGCTTESEEEE---TT-SC----HHHHHHHHH---SSEEEEEES-HH-----------HHHHHHHHHHC-CEEEEE
T ss_pred hhhhhhhcCCCEEEEcCCCCCch----HHHHHHHhc---CCeEEEEECCHH-----------HHHHHHHHHhh-cCEEEE
Confidence 122689998544433333 234444433 345666766322 33333344554 999988
Q ss_pred EeecccccCCccchhHHHHh
Q 024021 246 IVDNKLAIGPRKGREKLGRW 265 (274)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~ 265 (274)
+...+. ++.-...|++.++
T Consensus 331 v~~~Dm-FP~T~HvE~v~lL 349 (352)
T PF05958_consen 331 VQPVDM-FPQTHHVETVALL 349 (352)
T ss_dssp EEEE-S-STTSS--EEEEEE
T ss_pred EEEeec-CCCCCcEEEEEEE
Confidence 776542 3333345554443
No 212
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.59 E-value=7.6e-07 Score=73.66 Aligned_cols=86 Identities=13% Similarity=0.082 Sum_probs=70.0
Q ss_pred HHHHHhcCC-CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCC--C
Q 024021 98 IVHLHQSGA-LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE--L 174 (274)
Q Consensus 98 ~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~--~ 174 (274)
+...+.... .++..|||||+|.|.++..|++.+.+|+++|+++.+++..++..... ++++++.+|+.+...+. .
T Consensus 19 ~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~---~n~~vi~~DaLk~d~~~l~~ 95 (259)
T COG0030 19 IDKIVEAANISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAPY---DNLTVINGDALKFDFPSLAQ 95 (259)
T ss_pred HHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcccc---cceEEEeCchhcCcchhhcC
Confidence 444444443 33579999999999999999999999999999999999999987633 67999999999855444 6
Q ss_pred eeEEEecccccc
Q 024021 175 FDLIFDYTFFCA 186 (274)
Q Consensus 175 ~D~v~~~~~~~~ 186 (274)
++.|+++-.+.-
T Consensus 96 ~~~vVaNlPY~I 107 (259)
T COG0030 96 PYKVVANLPYNI 107 (259)
T ss_pred CCEEEEcCCCcc
Confidence 889998877663
No 213
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.58 E-value=5.9e-07 Score=72.50 Aligned_cols=150 Identities=19% Similarity=0.164 Sum_probs=102.9
Q ss_pred CCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcce-EEEEcccCCCCC---CCCeeEEEe
Q 024021 106 ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFV-SFLKADFFTWCP---TELFDLIFD 180 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~~d~~~~~~---~~~~D~v~~ 180 (274)
..++..+||+|+.||.++..+.+.|+ .|+++|....+++.--+.- +++ .+...|+....+ .+..|++++
T Consensus 77 ~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d------~rV~~~E~tN~r~l~~~~~~~~~d~~v~ 150 (245)
T COG1189 77 DVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRND------PRVIVLERTNVRYLTPEDFTEKPDLIVI 150 (245)
T ss_pred CCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcC------CcEEEEecCChhhCCHHHcccCCCeEEE
Confidence 55678999999999999999999887 8999999887665544332 233 344456654222 236789998
Q ss_pred cccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCC------C----CCCcc-cCHHHHHHHHhcCCCcEEEEeec
Q 024021 181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHV------G----GPPYK-VSVSDYEEVLQPMGFQAISIVDN 249 (274)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~------~----~~~~~-~~~~~~~~~l~~~Gf~~~~~~~~ 249 (274)
.-.|..+ ..++..+..+++|++.++...-+..+.. . .+..+ ....++.+++++.||.+..+...
T Consensus 151 DvSFISL-----~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~gl~~S 225 (245)
T COG1189 151 DVSFISL-----KLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKGLIKS 225 (245)
T ss_pred EeehhhH-----HHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEeeeEcc
Confidence 7666543 5678999999999999887664432210 0 11111 24578899999999999999884
Q ss_pred ccccCCccchhHHHHhhhh
Q 024021 250 KLAIGPRKGREKLGRWKRS 268 (274)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~ 268 (274)
+ +....++..+..|.+.
T Consensus 226 p--i~G~~GNiE~l~~~~k 242 (245)
T COG1189 226 P--IKGGKGNIEFLLLLKK 242 (245)
T ss_pred C--ccCCCCcEeeeeeeec
Confidence 4 4444456666665543
No 214
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.58 E-value=9.2e-08 Score=75.83 Aligned_cols=98 Identities=19% Similarity=0.277 Sum_probs=77.2
Q ss_pred CCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----CCCCeeEEEecc
Q 024021 108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----PTELFDLIFDYT 182 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~D~v~~~~ 182 (274)
....|+|.-||.|+.+.+.+..+..|+++|++|.-+..|+.+++..|..++++|+++|+.+.. ....+|+|+.+.
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~sp 173 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLSP 173 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecCC
Confidence 457899999999999999999999999999999999999999999999899999999998732 223477998887
Q ss_pred cccccChhHHHHHHHHHHhcccCCc
Q 024021 183 FFCAIEPEMRAAWAQKIKDFLKPDG 207 (274)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~~L~pgG 207 (274)
.+..- +....-+-.+...+.|.|
T Consensus 174 pwggp--~y~~~~~~DL~~~~~p~~ 196 (263)
T KOG2730|consen 174 PWGGP--SYLRADVYDLETHLKPMG 196 (263)
T ss_pred CCCCc--chhhhhhhhhhhhcchhH
Confidence 76653 222233344555555554
No 215
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.58 E-value=5.9e-07 Score=75.75 Aligned_cols=104 Identities=19% Similarity=0.178 Sum_probs=81.8
Q ss_pred CeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcCC--C-CcceEEEEcccCCCC--CCCCeeEEEecc
Q 024021 110 GRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLP--N-AKFVSFLKADFFTWC--PTELFDLIFDYT 182 (274)
Q Consensus 110 ~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~--~-~~~~~~~~~d~~~~~--~~~~~D~v~~~~ 182 (274)
++||-||.|.|..+..+.+. -.+++.+|+++..++.+++.++... . .+|++++.+|..+.. ..++||+|++..
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~ 157 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS 157 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence 69999999999999999883 3599999999999999999887643 2 478999999998832 234799999754
Q ss_pred cccccChh--HHHHHHHHHHhcccCCcEEEEEE
Q 024021 183 FFCAIEPE--MRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 183 ~~~~~~~~--~~~~~l~~~~~~L~pgG~~~~~~ 213 (274)
.-..-+.+ ....+++.+.++|+++|+++...
T Consensus 158 tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~ 190 (282)
T COG0421 158 TDPVGPAEALFTEEFYEGCRRALKEDGIFVAQA 190 (282)
T ss_pred CCCCCcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence 42211101 12578899999999999999874
No 216
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.58 E-value=4.4e-07 Score=83.20 Aligned_cols=103 Identities=17% Similarity=0.152 Sum_probs=81.6
Q ss_pred CCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---CCCCCCeeEEEeccc
Q 024021 109 KGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPTELFDLIFDYTF 183 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~D~v~~~~~ 183 (274)
...+||||||.|.++..++. +...++|+|+....+..+.......++ .|+.++..|+.. ..+.+++|.|+.+++
T Consensus 348 ~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l-~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP 426 (506)
T PRK01544 348 RKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNI-TNFLLFPNNLDLILNDLPNNSLDGIYILFP 426 (506)
T ss_pred CceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence 46899999999999998887 677999999999999998888766665 468888887743 456778999997655
Q ss_pred ccccChh-------HHHHHHHHHHhcccCCcEEEEEE
Q 024021 184 FCAIEPE-------MRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 184 ~~~~~~~-------~~~~~l~~~~~~L~pgG~~~~~~ 213 (274)
=-+ +.. ....+++.+.+.|+|||.+.+.+
T Consensus 427 DPW-pKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 427 DPW-IKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred CCC-CCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 332 211 12578999999999999999876
No 217
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=98.57 E-value=1.6e-06 Score=72.43 Aligned_cols=146 Identities=22% Similarity=0.230 Sum_probs=101.0
Q ss_pred CCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHh---hcCC-------------------------------
Q 024021 109 KGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELS---SSLP------------------------------- 154 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~---~~~~------------------------------- 154 (274)
..+||-.|||.|.++..++..|..+-|-|+|--|+--..-.+ ...+
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~p 230 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIHP 230 (369)
T ss_pred CceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCccccc
Confidence 368999999999999999998888888888766653221111 1110
Q ss_pred -----CCcceEEEEcccCCCCC----CCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE-----ccCCCC-
Q 024021 155 -----NAKFVSFLKADFFTWCP----TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM-----FPISDH- 219 (274)
Q Consensus 155 -----~~~~~~~~~~d~~~~~~----~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~-----~~~~~~- 219 (274)
..+...+..||+.+..+ .+.||+|+..+.+... .+.-++++.+.++|+|||+++=.. +.....
T Consensus 231 ~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa--~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g~ 308 (369)
T KOG2798|consen 231 ASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTA--HNILEYIDTIYKILKPGGVWINLGPLLYHFEDTHGV 308 (369)
T ss_pred cccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeech--HHHHHHHHHHHHhccCCcEEEeccceeeeccCCCCC
Confidence 11234446677776222 3469999988776654 566789999999999999987532 111111
Q ss_pred CCCCCcccCHHHHHHHHhcCCCcEEEEeecccccCCc
Q 024021 220 VGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIGPR 256 (274)
Q Consensus 220 ~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~ 256 (274)
.......++.+++..+++..||++++-......+..-
T Consensus 309 ~~~~siEls~edl~~v~~~~GF~~~ke~~Idt~Y~~n 345 (369)
T KOG2798|consen 309 ENEMSIELSLEDLKRVASHRGFEVEKERGIDTTYGTN 345 (369)
T ss_pred cccccccccHHHHHHHHHhcCcEEEEeeeeecccCCC
Confidence 1122345789999999999999999988777666654
No 218
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.51 E-value=1.4e-06 Score=75.44 Aligned_cols=107 Identities=17% Similarity=0.248 Sum_probs=83.4
Q ss_pred CCCCeEEEEcCCcchhHHHhhCCCC-----------------------------------------eEEEEeCChHHHHH
Q 024021 107 LPKGRALVPGCGTGYDVVAMASPER-----------------------------------------YVVGLEISDIAIKK 145 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~~~~-----------------------------------------~v~~vD~~~~~~~~ 145 (274)
.++..++|.-||+|.+++..+..+. .++|+|+++.+++.
T Consensus 190 ~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~ 269 (381)
T COG0116 190 KPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEG 269 (381)
T ss_pred CCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHH
Confidence 3446899999999999987765221 27799999999999
Q ss_pred HHHHhhcCCCCcceEEEEcccCCCCCC-CCeeEEEecccccc-cChh-----HHHHHHHHHHhcccCCcEEEEEE
Q 024021 146 AEELSSSLPNAKFVSFLKADFFTWCPT-ELFDLIFDYTFFCA-IEPE-----MRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 146 a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~D~v~~~~~~~~-~~~~-----~~~~~l~~~~~~L~pgG~~~~~~ 213 (274)
|+.|....|+.+.++|.++|+..+.++ +.+|+|+++.++.- +..+ ..+.+.+.+.+.++--+..+++.
T Consensus 270 Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt 344 (381)
T COG0116 270 AKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTT 344 (381)
T ss_pred HHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEc
Confidence 999999999999999999999985554 78999999998764 3222 23455566667777667776654
No 219
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=98.51 E-value=2e-06 Score=73.30 Aligned_cols=137 Identities=13% Similarity=0.211 Sum_probs=97.5
Q ss_pred CeEEEEcCCcchhHHHhhC-CCC-eEEEEeCChHHHHHHHHHh--hc-C--C-CCcceEEEEcccCCCC--CCCCeeEEE
Q 024021 110 GRALVPGCGTGYDVVAMAS-PER-YVVGLEISDIAIKKAEELS--SS-L--P-NAKFVSFLKADFFTWC--PTELFDLIF 179 (274)
Q Consensus 110 ~~vLDiG~G~G~~~~~l~~-~~~-~v~~vD~~~~~~~~a~~~~--~~-~--~-~~~~~~~~~~d~~~~~--~~~~~D~v~ 179 (274)
.+||-+|.|.|.-+.++.+ ++. +++-+|++|++++.++.+. .. + . ..++++++..|.+++. ..+.||.|+
T Consensus 291 ~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vI 370 (508)
T COG4262 291 RSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVI 370 (508)
T ss_pred ceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEEE
Confidence 6999999999999999988 544 9999999999999998432 11 1 1 2478999999999843 345899999
Q ss_pred eccc------ccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeeccccc
Q 024021 180 DYTF------FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAI 253 (274)
Q Consensus 180 ~~~~------~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~ 253 (274)
.... +..+ ...++...+.+.|+++|.+++..-++...+. .--.+.+.++++||.+...+.....+
T Consensus 371 VDl~DP~tps~~rl---YS~eFY~ll~~~l~e~Gl~VvQags~y~tp~------vfw~i~aTik~AG~~~~Pyhv~VPTF 441 (508)
T COG4262 371 VDLPDPSTPSIGRL---YSVEFYRLLSRHLAETGLMVVQAGSPYFTPR------VFWRIDATIKSAGYRVWPYHVHVPTF 441 (508)
T ss_pred EeCCCCCCcchhhh---hhHHHHHHHHHhcCcCceEEEecCCCccCCc------eeeeehhHHHhCcceeeeeEEecCcc
Confidence 5322 1111 1246678889999999999987633322111 12356778899999887776655554
Q ss_pred CC
Q 024021 254 GP 255 (274)
Q Consensus 254 ~~ 255 (274)
..
T Consensus 442 Ge 443 (508)
T COG4262 442 GE 443 (508)
T ss_pred cc
Confidence 44
No 220
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.46 E-value=5.5e-06 Score=74.95 Aligned_cols=110 Identities=20% Similarity=0.134 Sum_probs=83.0
Q ss_pred CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC--CCCCCeeEEEe
Q 024021 106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--CPTELFDLIFD 180 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~D~v~~ 180 (274)
..++.+|||++||.|.=+..++. ....++++|+++..+...++++...+. .++.+...|.... ...+.||.|++
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~-~nv~v~~~D~~~~~~~~~~~fD~ILv 189 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV-SNVALTHFDGRVFGAALPETFDAILL 189 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEeCchhhhhhhchhhcCeEEE
Confidence 45678999999999999988876 235899999999999999999998876 4588888887653 22457999995
Q ss_pred ccc------ccccC-------hh-------HHHHHHHHHHhcccCCcEEEEEEccC
Q 024021 181 YTF------FCAIE-------PE-------MRAAWAQKIKDFLKPDGELITLMFPI 216 (274)
Q Consensus 181 ~~~------~~~~~-------~~-------~~~~~l~~~~~~L~pgG~~~~~~~~~ 216 (274)
... +..-+ .+ ....+|....+.|+|||+++..+.+.
T Consensus 190 DaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~ 245 (470)
T PRK11933 190 DAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL 245 (470)
T ss_pred cCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence 322 22111 11 12578899999999999998766543
No 221
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=98.46 E-value=2.4e-06 Score=70.81 Aligned_cols=133 Identities=17% Similarity=0.192 Sum_probs=82.9
Q ss_pred CeEEEEcCCcc--hhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC---CC---------C
Q 024021 110 GRALVPGCGTG--YDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---CP---------T 172 (274)
Q Consensus 110 ~~vLDiG~G~G--~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~---~~---------~ 172 (274)
...||||||-- .+.-.+++ +.++|+-+|.+|-.+..++..+..... .+..++.+|+.++ .. -
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p~~iL~~p~~~~~lD~ 148 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDPEAILAHPEVRGLLDF 148 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-HHHHHCSHHHHCC--T
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCHHHHhcCHHHHhcCCC
Confidence 68999999954 23334443 789999999999999999998866531 2489999999872 11 1
Q ss_pred CCeeEEEecccccccCh-hHHHHHHHHHHhcccCCcEEEEEEccCCCC-------------CCCCCcccCHHHHHHHHhc
Q 024021 173 ELFDLIFDYTFFCAIEP-EMRAAWAQKIKDFLKPDGELITLMFPISDH-------------VGGPPYKVSVSDYEEVLQP 238 (274)
Q Consensus 173 ~~~D~v~~~~~~~~~~~-~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~l~~ 238 (274)
.+.=.++...+++++++ +....++..+.+.|.||.++.+........ ...+.+.-+.+++.++|.
T Consensus 149 ~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~~~~~~~~~~~~~~~~~~Rs~~ei~~~f~- 227 (267)
T PF04672_consen 149 DRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPERAEALEAVYAQAGSPGRPRSREEIAAFFD- 227 (267)
T ss_dssp TS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHHHHHHHHHHHHHCCS----B-HHHHHHCCT-
T ss_pred CCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHHHHHHHHHHHHcCCCCceecCHHHHHHHcC-
Confidence 22336777889999866 577899999999999999999988765432 122223347888888887
Q ss_pred CCCcEEE
Q 024021 239 MGFQAIS 245 (274)
Q Consensus 239 ~Gf~~~~ 245 (274)
||++++
T Consensus 228 -g~elve 233 (267)
T PF04672_consen 228 -GLELVE 233 (267)
T ss_dssp -TSEE-T
T ss_pred -CCccCC
Confidence 787754
No 222
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.45 E-value=1.1e-06 Score=75.98 Aligned_cols=136 Identities=19% Similarity=0.189 Sum_probs=84.9
Q ss_pred CCCCeEEEEcCCcchhHHHhhC---------CCCeEEEEeCChHHHHHHHHHhhcCCCC-cceEEEEcccCCCCC---CC
Q 024021 107 LPKGRALVPGCGTGYDVVAMAS---------PERYVVGLEISDIAIKKAEELSSSLPNA-KFVSFLKADFFTWCP---TE 173 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~---------~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~---~~ 173 (274)
.++.+|+|.+||+|.++..+.+ ....++|+|+++.++..|+.++...+.. .+..+..+|...... ..
T Consensus 45 ~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~~ 124 (311)
T PF02384_consen 45 KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKNQ 124 (311)
T ss_dssp -TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST-
T ss_pred cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccccccccc
Confidence 3446899999999999877765 4569999999999999998877555432 234688888876222 46
Q ss_pred CeeEEEeccccccc--Ch-----------------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHH
Q 024021 174 LFDLIFDYTFFCAI--EP-----------------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEE 234 (274)
Q Consensus 174 ~~D~v~~~~~~~~~--~~-----------------~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (274)
.||+|+++.++... .. ..-..++..+.+.|++||++.++.....-... .....+++
T Consensus 125 ~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~L~~~-----~~~~~iR~ 199 (311)
T PF02384_consen 125 KFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGFLFSS-----SSEKKIRK 199 (311)
T ss_dssp -EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHHHHGS-----THHHHHHH
T ss_pred ccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchhhhcc-----chHHHHHH
Confidence 89999999877644 11 01135889999999999997776632210000 02356766
Q ss_pred HHhcCCCcEEEEee
Q 024021 235 VLQPMGFQAISIVD 248 (274)
Q Consensus 235 ~l~~~Gf~~~~~~~ 248 (274)
.|-+.+ .+..+..
T Consensus 200 ~ll~~~-~i~aVI~ 212 (311)
T PF02384_consen 200 YLLENG-YIEAVIS 212 (311)
T ss_dssp HHHHHE-EEEEEEE
T ss_pred HHHhhc-hhhEEee
Confidence 666543 3444444
No 223
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.44 E-value=2.9e-06 Score=80.98 Aligned_cols=106 Identities=16% Similarity=0.118 Sum_probs=78.5
Q ss_pred CCCeEEEEcCCcchhHHHhhC------CC--------------------------------------CeEEEEeCChHHH
Q 024021 108 PKGRALVPGCGTGYDVVAMAS------PE--------------------------------------RYVVGLEISDIAI 143 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~------~~--------------------------------------~~v~~vD~~~~~~ 143 (274)
++..++|.+||+|.+++..+. +| ..++|+|+++.++
T Consensus 190 ~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av 269 (702)
T PRK11783 190 EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVI 269 (702)
T ss_pred CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHH
Confidence 457999999999999876643 11 2699999999999
Q ss_pred HHHHHHhhcCCCCcceEEEEcccCCCCC---CCCeeEEEeccccccc-C-hhHHHHHHHHHHhcc---cCCcEEEEEE
Q 024021 144 KKAEELSSSLPNAKFVSFLKADFFTWCP---TELFDLIFDYTFFCAI-E-PEMRAAWAQKIKDFL---KPDGELITLM 213 (274)
Q Consensus 144 ~~a~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~D~v~~~~~~~~~-~-~~~~~~~l~~~~~~L---~pgG~~~~~~ 213 (274)
+.|+.|+...++.+.++|..+|+.+... .++||+|+++..+..- . ......+...+.+.+ .+|+.+++.+
T Consensus 270 ~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~llt 347 (702)
T PRK11783 270 QAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAALFS 347 (702)
T ss_pred HHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 9999999999888889999999987432 2469999999887642 2 123333333333333 4888877765
No 224
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.43 E-value=9e-07 Score=77.79 Aligned_cols=97 Identities=12% Similarity=0.017 Sum_probs=79.0
Q ss_pred CeEEEEcCCcchhHHHhhCC--CC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC--CCCeeEEEecccc
Q 024021 110 GRALVPGCGTGYDVVAMASP--ER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--TELFDLIFDYTFF 184 (274)
Q Consensus 110 ~~vLDiG~G~G~~~~~l~~~--~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~D~v~~~~~~ 184 (274)
.+|||+.||+|..++.++.. |. .|+++|+++.+++.+++|+..++.. ++.++..|+..... ...||+|.... +
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~Da~~~l~~~~~~fDvIdlDP-f 123 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-NIEVPNEDAANVLRYRNRKFHVIDIDP-F 123 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEchhHHHHHHHhCCCCCEEEeCC-C
Confidence 58999999999999988874 54 8999999999999999999877653 58899999887432 35799999755 4
Q ss_pred cccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021 185 CAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 213 (274)
+ .+ ..+++.+.+.+++||+++++.
T Consensus 124 G-s~----~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 124 G-TP----APFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred C-Cc----HHHHHHHHHhcccCCEEEEEe
Confidence 3 22 257888999999999999975
No 225
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.42 E-value=7.1e-06 Score=65.38 Aligned_cols=122 Identities=17% Similarity=0.144 Sum_probs=85.3
Q ss_pred CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC---------CCCC
Q 024021 106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---------CPTE 173 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~---------~~~~ 173 (274)
..++..|+|+|+..|.|+..+++ .+..|+++|+.|- ... +++.++++|++.. ....
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~---------~~~---~~V~~iq~d~~~~~~~~~l~~~l~~~ 110 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM---------KPI---PGVIFLQGDITDEDTLEKLLEALGGA 110 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc---------ccC---CCceEEeeeccCccHHHHHHHHcCCC
Confidence 34568999999999999998887 3345999999763 111 4599999999872 2234
Q ss_pred CeeEEEecccc--------ccc-ChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEE
Q 024021 174 LFDLIFDYTFF--------CAI-EPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAI 244 (274)
Q Consensus 174 ~~D~v~~~~~~--------~~~-~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~ 244 (274)
++|+|++...- +|. .-.....+++-...+|+|||.+++-.+-.. ..+++...++. .|..+
T Consensus 111 ~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~----------~~~~~l~~~~~-~F~~v 179 (205)
T COG0293 111 PVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGE----------DFEDLLKALRR-LFRKV 179 (205)
T ss_pred CcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCC----------CHHHHHHHHHH-hhcee
Confidence 57999975443 111 012234566777889999999999776553 45677777776 48887
Q ss_pred EEeecc
Q 024021 245 SIVDNK 250 (274)
Q Consensus 245 ~~~~~~ 250 (274)
......
T Consensus 180 ~~~KP~ 185 (205)
T COG0293 180 KIFKPK 185 (205)
T ss_pred EEecCc
Confidence 776533
No 226
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.41 E-value=1.8e-06 Score=65.62 Aligned_cols=84 Identities=19% Similarity=0.260 Sum_probs=66.6
Q ss_pred CCCCeEEEEcCCcchhHHHhhC------CCCeEEEEeCChHHHHHHHHHhhcCC--CCcceEEEEcccCCCCCCCCeeEE
Q 024021 107 LPKGRALVPGCGTGYDVVAMAS------PERYVVGLEISDIAIKKAEELSSSLP--NAKFVSFLKADFFTWCPTELFDLI 178 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~------~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~D~v 178 (274)
.+..+|+|+|||.|+++..++. .+.+|+++|.++..++.+..+....+ ...++.+..++..........+++
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDIL 103 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeEE
Confidence 4457999999999999998877 57799999999999999998887665 445677777777654445678999
Q ss_pred EecccccccChh
Q 024021 179 FDYTFFCAIEPE 190 (274)
Q Consensus 179 ~~~~~~~~~~~~ 190 (274)
+..+.-..+.+.
T Consensus 104 vgLHaCG~Ls~~ 115 (141)
T PF13679_consen 104 VGLHACGDLSDR 115 (141)
T ss_pred EEeecccchHHH
Confidence 988877766543
No 227
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.38 E-value=8.2e-07 Score=70.53 Aligned_cols=119 Identities=20% Similarity=0.256 Sum_probs=75.4
Q ss_pred CCeEEEEcCCcchhHHHhhCCC---CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---------CCC--CCC
Q 024021 109 KGRALVPGCGTGYDVVAMASPE---RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---------WCP--TEL 174 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~---------~~~--~~~ 174 (274)
+.++||+||++|.++..+.+.+ .+|+|+|+.+. ... ..+.++.+|+.+ ... .++
T Consensus 24 ~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~---------~~~---~~~~~i~~d~~~~~~~~~i~~~~~~~~~~ 91 (181)
T PF01728_consen 24 GFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM---------DPL---QNVSFIQGDITNPENIKDIRKLLPESGEK 91 (181)
T ss_dssp TEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST---------GS----TTEEBTTGGGEEEEHSHHGGGSHGTTTCS
T ss_pred ccEEEEcCCcccceeeeeeecccccceEEEEecccc---------ccc---cceeeeecccchhhHHHhhhhhccccccC
Confidence 4799999999999999999976 69999999876 110 235556666544 111 258
Q ss_pred eeEEEecccccccC-----h----hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEE
Q 024021 175 FDLIFDYTFFCAIE-----P----EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAIS 245 (274)
Q Consensus 175 ~D~v~~~~~~~~~~-----~----~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 245 (274)
+|+|++......-. . ......+.-+.+.|+|||.+++-.+... ...++...++. .|+.+.
T Consensus 92 ~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~----------~~~~~~~~l~~-~F~~v~ 160 (181)
T PF01728_consen 92 FDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGP----------EIEELIYLLKR-CFSKVK 160 (181)
T ss_dssp ESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSST----------TSHHHHHHHHH-HHHHEE
T ss_pred cceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCc----------cHHHHHHHHHh-CCeEEE
Confidence 99999977432211 1 2223445566678999999988776532 12377777776 687776
Q ss_pred Eeecc
Q 024021 246 IVDNK 250 (274)
Q Consensus 246 ~~~~~ 250 (274)
+....
T Consensus 161 ~~Kp~ 165 (181)
T PF01728_consen 161 IVKPP 165 (181)
T ss_dssp EEE-T
T ss_pred EEECc
Confidence 66533
No 228
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.37 E-value=4.6e-07 Score=78.99 Aligned_cols=109 Identities=24% Similarity=0.232 Sum_probs=93.0
Q ss_pred CCCCCeEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEeccc
Q 024021 106 ALPKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTF 183 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~~~ 183 (274)
-.++..++|+|||.|....++.. .+..++|+|.++..+..+........+.++..++.+|+.+ +.+++.||.+.+..+
T Consensus 108 ~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~ 187 (364)
T KOG1269|consen 108 CFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEV 187 (364)
T ss_pred CcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEee
Confidence 34556899999999999999988 6679999999999999988887776666778888889988 677889999999999
Q ss_pred ccccChhHHHHHHHHHHhcccCCcEEEEEEccC
Q 024021 184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (274)
Q Consensus 184 ~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 216 (274)
.+|.+. ...++.++.++++|||+++..++..
T Consensus 188 ~~~~~~--~~~~y~Ei~rv~kpGG~~i~~e~i~ 218 (364)
T KOG1269|consen 188 VCHAPD--LEKVYAEIYRVLKPGGLFIVKEWIK 218 (364)
T ss_pred cccCCc--HHHHHHHHhcccCCCceEEeHHHHH
Confidence 999864 4678999999999999999866543
No 229
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.35 E-value=3.3e-06 Score=66.01 Aligned_cols=120 Identities=20% Similarity=0.262 Sum_probs=86.4
Q ss_pred ccchhHhhhcCCCCccCCCccHHHHHHHhcC--CCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhh
Q 024021 75 SGGWEKCWEEGLTPWDIGQPAPIIVHLHQSG--ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSS 151 (274)
Q Consensus 75 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~ 151 (274)
..+|.-.|..+. .+.+++... ...+++|||+|+|+|..++..++.|+ .|+..|+.|......+-|..
T Consensus 54 Ppfwa~~WagG~----------~lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~ 123 (218)
T COG3897 54 PPFWAFAWAGGQ----------VLARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAA 123 (218)
T ss_pred chHHHHHHhhhH----------HHHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchh
Confidence 346766665432 244555433 24568999999999999999999887 89999999998888888888
Q ss_pred cCCCCcceEEEEcccCCCCCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEE
Q 024021 152 SLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT 211 (274)
Q Consensus 152 ~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~ 211 (274)
.++ ..+.+...|..- .+..||++++..++..- ..-..++. ....++..|..++
T Consensus 124 ang--v~i~~~~~d~~g--~~~~~Dl~LagDlfy~~--~~a~~l~~-~~~~l~~~g~~vl 176 (218)
T COG3897 124 ANG--VSILFTHADLIG--SPPAFDLLLAGDLFYNH--TEADRLIP-WKDRLAEAGAAVL 176 (218)
T ss_pred hcc--ceeEEeeccccC--CCcceeEEEeeceecCc--hHHHHHHH-HHHHHHhCCCEEE
Confidence 877 358888888765 45679999999887643 33445666 5555555555444
No 230
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.33 E-value=9.9e-07 Score=68.37 Aligned_cols=101 Identities=19% Similarity=0.129 Sum_probs=79.8
Q ss_pred CCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccccC
Q 024021 109 KGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIE 188 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~ 188 (274)
...+.|+|+|+|.++...++..-+|++++.+|.....|.+++...+. +++.++.+|...... +..|+|+|-..=-.+-
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~-~n~evv~gDA~~y~f-e~ADvvicEmlDTaLi 110 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGD-VNWEVVVGDARDYDF-ENADVVICEMLDTALI 110 (252)
T ss_pred hhceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCCC-cceEEEecccccccc-cccceeHHHHhhHHhh
Confidence 37899999999999999988867999999999999999999766654 679999999988554 5679999754322222
Q ss_pred hhHHHHHHHHHHhcccCCcEEEE
Q 024021 189 PEMRAAWAQKIKDFLKPDGELIT 211 (274)
Q Consensus 189 ~~~~~~~l~~~~~~L~pgG~~~~ 211 (274)
.+....++..+.+.|+.++.++-
T Consensus 111 ~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 111 EEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred cccccHHHHHHHHHhhcCCcccc
Confidence 23345678888889999988764
No 231
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=98.31 E-value=1.6e-06 Score=64.90 Aligned_cols=117 Identities=15% Similarity=0.172 Sum_probs=74.7
Q ss_pred eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---CCCCCCeeEEEecccccccCh---------hHHHHHHHHH
Q 024021 132 YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPTELFDLIFDYTFFCAIEP---------EMRAAWAQKI 199 (274)
Q Consensus 132 ~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~D~v~~~~~~~~~~~---------~~~~~~l~~~ 199 (274)
+|+++|+-+++++..++++...+..++++++..+-.+ ..+.+++|+++.+ ++++|. +..-..++.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFN--LGYLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFN--LGYLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEE--ESB-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEE--CCcCCCCCCCCCcCcHHHHHHHHHH
Confidence 5899999999999999999998887889999987766 2333589999854 455543 2345788999
Q ss_pred HhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecccc
Q 024021 200 KDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLA 252 (274)
Q Consensus 200 ~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~ 252 (274)
.++|+|||++.++.+..... |..-.-...++.+-+....|.+.........
T Consensus 79 l~lL~~gG~i~iv~Y~GH~g--G~eE~~av~~~~~~L~~~~~~V~~~~~~N~~ 129 (140)
T PF06962_consen 79 LELLKPGGIITIVVYPGHPG--GKEESEAVEEFLASLDQKEFNVLKYQFINQK 129 (140)
T ss_dssp HHHEEEEEEEEEEE--STCH--HHHHHHHHHHHHHTS-TTTEEEEEEEESS-S
T ss_pred HHhhccCCEEEEEEeCCCCC--CHHHHHHHHHHHHhCCcceEEEEEEEccCCC
Confidence 99999999999999865321 0000012334444444556887776654443
No 232
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.31 E-value=1.4e-05 Score=64.18 Aligned_cols=136 Identities=21% Similarity=0.283 Sum_probs=88.2
Q ss_pred CCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC----CCCCeeEEE
Q 024021 107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC----PTELFDLIF 179 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~D~v~ 179 (274)
.++.+||-+|+.+|.....++. +...|+++|+++......-...... +|+--+.+|+..+. .-+.+|+|+
T Consensus 72 k~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R---~NIiPIl~DAr~P~~Y~~lv~~VDvI~ 148 (229)
T PF01269_consen 72 KPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR---PNIIPILEDARHPEKYRMLVEMVDVIF 148 (229)
T ss_dssp -TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS---TTEEEEES-TTSGGGGTTTS--EEEEE
T ss_pred CCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC---CceeeeeccCCChHHhhcccccccEEE
Confidence 4568999999999999888776 5779999999996554444433332 57888999998732 235899999
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024021 180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNK 250 (274)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 250 (274)
+.-. .+++..-++..+...||+||.+++..-...-.....+-. -..+-.+.|++.||+..+.....
T Consensus 149 ~DVa----Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~-vf~~e~~~L~~~~~~~~e~i~Le 214 (229)
T PF01269_consen 149 QDVA----QPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEE-VFAEEVKKLKEEGFKPLEQITLE 214 (229)
T ss_dssp EE-S----STTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHH-HHHHHHHHHHCTTCEEEEEEE-T
T ss_pred ecCC----ChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHH-HHHHHHHHHHHcCCChheEeccC
Confidence 6322 235667788889999999999988764322111111111 12333456677799998776643
No 233
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.31 E-value=2.3e-06 Score=72.64 Aligned_cols=72 Identities=15% Similarity=0.115 Sum_probs=59.4
Q ss_pred CCCCeEEEEcCCcchhHHHhhCC---CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC---CCCC--CeeEE
Q 024021 107 LPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---CPTE--LFDLI 178 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~---~~~~--~~D~v 178 (274)
.++..++|++||.|..+..+++. ..+|+|+|.++++++.|++++.. .++++++++|+.+. .+.+ ++|.|
T Consensus 18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~l~~~~~~vDgI 94 (296)
T PRK00050 18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEVLAEGLGKVDGI 94 (296)
T ss_pred CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHHHHcCCCccCEE
Confidence 45679999999999999999873 47999999999999999988755 36899999999872 2222 79999
Q ss_pred Eec
Q 024021 179 FDY 181 (274)
Q Consensus 179 ~~~ 181 (274)
++.
T Consensus 95 l~D 97 (296)
T PRK00050 95 LLD 97 (296)
T ss_pred EEC
Confidence 975
No 234
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=98.29 E-value=2.2e-06 Score=71.77 Aligned_cols=104 Identities=20% Similarity=0.288 Sum_probs=65.5
Q ss_pred CCeEEEEcCCcchhH-HHhhC---CCCeEEEEeCChHHHHHHHHHhh-cCCCCcceEEEEcccCCCC-CCCCeeEEEecc
Q 024021 109 KGRALVPGCGTGYDV-VAMAS---PERYVVGLEISDIAIKKAEELSS-SLPNAKFVSFLKADFFTWC-PTELFDLIFDYT 182 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~-~~l~~---~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~ 182 (274)
+.+|+=||||.=-++ +.+++ .+..++++|+++++++.+++.+. ..++..+++|+.+|..... .-..||+|+...
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 359999999975554 45554 46789999999999999999887 4456678999999997643 335799999776
Q ss_pred cccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021 183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 213 (274)
..+ ++.+...++++++.+.++||..+++-.
T Consensus 201 lVg-~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 201 LVG-MDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp T-S-----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred hcc-cccchHHHHHHHHHhhCCCCcEEEEec
Confidence 655 233455789999999999999888753
No 235
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.27 E-value=1.6e-05 Score=73.71 Aligned_cols=78 Identities=18% Similarity=0.309 Sum_probs=56.6
Q ss_pred CCeEEEEcCCcchhHHHhhC--C--------CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC----C--CCC
Q 024021 109 KGRALVPGCGTGYDVVAMAS--P--------ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----W--CPT 172 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l~~--~--------~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~----~--~~~ 172 (274)
..+|||.|||+|.++..+++ . ...++|+|+++.++..++.++...+. ....+...|... . ...
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~-~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL-LEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC-CCceeeeccccccccccccccc
Confidence 45899999999999987765 1 14799999999999999988765531 224555555432 1 112
Q ss_pred CCeeEEEeccccccc
Q 024021 173 ELFDLIFDYTFFCAI 187 (274)
Q Consensus 173 ~~~D~v~~~~~~~~~ 187 (274)
+.||+|+++.++...
T Consensus 111 ~~fD~IIgNPPy~~~ 125 (524)
T TIGR02987 111 DLFDIVITNPPYGRL 125 (524)
T ss_pred CcccEEEeCCCcccc
Confidence 579999999988754
No 236
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.27 E-value=3.2e-05 Score=67.89 Aligned_cols=133 Identities=20% Similarity=0.197 Sum_probs=95.2
Q ss_pred CCCCCeEEEEcCCcchhHHHhhC----CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---CCCC-CCeeE
Q 024021 106 ALPKGRALVPGCGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPT-ELFDL 177 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~---~~~~-~~~D~ 177 (274)
..++.+|||+.++.|.=+..++. .+..|+++|.++.-+...++++...|..+ +.....|... ..+. ++||.
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~n-v~~~~~d~~~~~~~~~~~~~fD~ 232 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRN-VIVVNKDARRLAELLPGGEKFDR 232 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCc-eEEEecccccccccccccCcCcE
Confidence 56678999999999998877776 35678999999999999999999988754 7777777654 2222 35999
Q ss_pred EEeccc------ccccCh-------h-------HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHh
Q 024021 178 IFDYTF------FCAIEP-------E-------MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQ 237 (274)
Q Consensus 178 v~~~~~------~~~~~~-------~-------~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 237 (274)
|++... +..=|+ . ....+|....+.|||||.++..+.+.... -+.+.+...++
T Consensus 233 iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~e-------ENE~vV~~~L~ 305 (355)
T COG0144 233 ILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPE-------ENEEVVERFLE 305 (355)
T ss_pred EEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchh-------cCHHHHHHHHH
Confidence 997432 211011 1 12588899999999999999877655322 14556667777
Q ss_pred cC-CCcEEEE
Q 024021 238 PM-GFQAISI 246 (274)
Q Consensus 238 ~~-Gf~~~~~ 246 (274)
+. +|+.+..
T Consensus 306 ~~~~~~~~~~ 315 (355)
T COG0144 306 RHPDFELEPV 315 (355)
T ss_pred hCCCceeecc
Confidence 75 5666554
No 237
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.26 E-value=1.9e-06 Score=71.31 Aligned_cols=113 Identities=18% Similarity=0.287 Sum_probs=88.0
Q ss_pred cHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCC
Q 024021 95 APIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTE 173 (274)
Q Consensus 95 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~ 173 (274)
-+.+.+++..... +..++|+|||.|..+.. .+...++|.|++...+..++..- ....+.+|+.+ +....
T Consensus 33 Wp~v~qfl~~~~~-gsv~~d~gCGngky~~~--~p~~~~ig~D~c~~l~~~ak~~~-------~~~~~~ad~l~~p~~~~ 102 (293)
T KOG1331|consen 33 WPMVRQFLDSQPT-GSVGLDVGCGNGKYLGV--NPLCLIIGCDLCTGLLGGAKRSG-------GDNVCRADALKLPFREE 102 (293)
T ss_pred cHHHHHHHhccCC-cceeeecccCCcccCcC--CCcceeeecchhhhhccccccCC-------CceeehhhhhcCCCCCC
Confidence 4567777775433 67999999999876532 26668999999988877776543 12577888888 66677
Q ss_pred CeeEEEecccccccCh-hHHHHHHHHHHhcccCCcEEEEEEccCC
Q 024021 174 LFDLIFDYTFFCAIEP-EMRAAWAQKIKDFLKPDGELITLMFPIS 217 (274)
Q Consensus 174 ~~D~v~~~~~~~~~~~-~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 217 (274)
+||.+++..+++|+.. ..+..+++++.++++|||..++..++..
T Consensus 103 s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~~ 147 (293)
T KOG1331|consen 103 SFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWALE 147 (293)
T ss_pred ccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehhh
Confidence 9999999999999864 4567899999999999999888777654
No 238
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.25 E-value=5.7e-06 Score=66.71 Aligned_cols=113 Identities=22% Similarity=0.214 Sum_probs=67.6
Q ss_pred HHHHHHHhcCCC-CCCeEEEEcCCcchhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhh-------cCCC-CcceEEEEc
Q 024021 96 PIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMAS-PER-YVVGLEISDIAIKKAEELSS-------SLPN-AKFVSFLKA 164 (274)
Q Consensus 96 ~~~~~~~~~~~~-~~~~vLDiG~G~G~~~~~l~~-~~~-~v~~vD~~~~~~~~a~~~~~-------~~~~-~~~~~~~~~ 164 (274)
..+..++..... ++...+|+|||.|....+.+. .++ +.+|||+.+...+.|+.... ..+. ..++++..+
T Consensus 29 ~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~g 108 (205)
T PF08123_consen 29 EFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHG 108 (205)
T ss_dssp HHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS
T ss_pred HHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeecc
Confidence 345555555543 457999999999999887765 455 69999999998888765332 2222 356888999
Q ss_pred ccCCCCC----CCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEE
Q 024021 165 DFFTWCP----TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT 211 (274)
Q Consensus 165 d~~~~~~----~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~ 211 (274)
|+.+... -...|+|++++.. ++++. ...+.++...||+|.+++.
T Consensus 109 dfl~~~~~~~~~s~AdvVf~Nn~~--F~~~l-~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 109 DFLDPDFVKDIWSDADVVFVNNTC--FDPDL-NLALAELLLELKPGARIIS 156 (205)
T ss_dssp -TTTHHHHHHHGHC-SEEEE--TT--T-HHH-HHHHHHHHTTS-TT-EEEE
T ss_pred CccccHhHhhhhcCCCEEEEeccc--cCHHH-HHHHHHHHhcCCCCCEEEE
Confidence 9886221 1357999998774 34444 3455777778999988765
No 239
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=98.25 E-value=3.6e-05 Score=61.56 Aligned_cols=122 Identities=13% Similarity=0.018 Sum_probs=94.2
Q ss_pred CCeEEEEcCCcchhHHHhhCCC--CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCCeeEEEeccccc
Q 024021 109 KGRALVPGCGTGYDVVAMASPE--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTFFC 185 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~~~ 185 (274)
+.++.||||-.|++..++.+.+ -.+++.|+++..++.|.+++...++.++++...+|.... .+...+|+|+..++-.
T Consensus 17 ~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGMGG 96 (226)
T COG2384 17 GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGMGG 96 (226)
T ss_pred CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCCcH
Confidence 4459999999999999998844 489999999999999999999999999999999999874 4445899998766644
Q ss_pred ccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEE
Q 024021 186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISI 246 (274)
Q Consensus 186 ~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 246 (274)
. ....++++-.+.|+.=-++++.- . .....+++++..++|.++.-
T Consensus 97 ~----lI~~ILee~~~~l~~~~rlILQP-n-----------~~~~~LR~~L~~~~~~I~~E 141 (226)
T COG2384 97 T----LIREILEEGKEKLKGVERLILQP-N-----------IHTYELREWLSANSYEIKAE 141 (226)
T ss_pred H----HHHHHHHHhhhhhcCcceEEECC-C-----------CCHHHHHHHHHhCCceeeee
Confidence 3 34566666666666333444421 0 15789999999999998763
No 240
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.21 E-value=3.8e-05 Score=58.63 Aligned_cols=102 Identities=25% Similarity=0.344 Sum_probs=70.0
Q ss_pred EEEEcCCcchhH--HHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC--CCCC--CCeeEEEeccccc
Q 024021 112 ALVPGCGTGYDV--VAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT--WCPT--ELFDLIFDYTFFC 185 (274)
Q Consensus 112 vLDiG~G~G~~~--~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~--~~~D~v~~~~~~~ 185 (274)
++|+|||+|... ..+...+..++++|+++.++..++..... .....+.+...|... .... ..||++......+
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 130 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLH 130 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCCCCCCceeEEeeeeehh
Confidence 999999999965 33322335899999999999985555432 211116778887765 2222 3799994444444
Q ss_pred ccChhHHHHHHHHHHhcccCCcEEEEEEccCC
Q 024021 186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPIS 217 (274)
Q Consensus 186 ~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 217 (274)
+.. ....+..+.+.++|+|.+++......
T Consensus 131 ~~~---~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 131 LLP---PAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred cCC---HHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 443 46788999999999999988776543
No 241
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=98.19 E-value=1.9e-05 Score=70.19 Aligned_cols=107 Identities=15% Similarity=0.233 Sum_probs=87.3
Q ss_pred CCCC-eEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEeccc
Q 024021 107 LPKG-RALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTF 183 (274)
Q Consensus 107 ~~~~-~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~~~ 183 (274)
.+.. ++|-+|||...+...+.+.|. .|+.+|+|+..++......... ..-..+...|... .+++++||+|+.-+.
T Consensus 46 ~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~--~~~~~~~~~d~~~l~fedESFdiVIdkGt 123 (482)
T KOG2352|consen 46 SPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKE--RPEMQMVEMDMDQLVFEDESFDIVIDKGT 123 (482)
T ss_pred chhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccC--CcceEEEEecchhccCCCcceeEEEecCc
Confidence 3444 999999999999999998887 7999999999999888776422 2458889999988 677899999999999
Q ss_pred ccccChh--------HHHHHHHHHHhcccCCcEEEEEEcc
Q 024021 184 FCAIEPE--------MRAAWAQKIKDFLKPDGELITLMFP 215 (274)
Q Consensus 184 ~~~~~~~--------~~~~~l~~~~~~L~pgG~~~~~~~~ 215 (274)
++++..+ .....+..+++++++||+.+.+...
T Consensus 124 lDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl~ 163 (482)
T KOG2352|consen 124 LDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTLV 163 (482)
T ss_pred cccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEee
Confidence 8886321 2356789999999999998887774
No 242
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=98.15 E-value=9.5e-06 Score=69.47 Aligned_cols=86 Identities=19% Similarity=0.175 Sum_probs=64.7
Q ss_pred CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-CCCeeEEEeccccc
Q 024021 107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-TELFDLIFDYTFFC 185 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~~~ 185 (274)
.++.++||+||++|.++..+++.|.+|++||..+- ... +.. .++|+....|.+...+ .+.+|+++|..+..
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l-~~~----L~~---~~~V~h~~~d~fr~~p~~~~vDwvVcDmve~ 281 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPM-AQS----LMD---TGQVEHLRADGFKFRPPRKNVDWLVCDMVEK 281 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechhc-CHh----hhC---CCCEEEEeccCcccCCCCCCCCEEEEecccC
Confidence 46789999999999999999999999999996542 111 111 2579999999888554 67899999866632
Q ss_pred ccChhHHHHHHHHHHhcccCC
Q 024021 186 AIEPEMRAAWAQKIKDFLKPD 206 (274)
Q Consensus 186 ~~~~~~~~~~l~~~~~~L~pg 206 (274)
...+.+.+.+++..|
T Consensus 282 ------P~rva~lm~~Wl~~g 296 (357)
T PRK11760 282 ------PARVAELMAQWLVNG 296 (357)
T ss_pred ------HHHHHHHHHHHHhcC
Confidence 235667777888766
No 243
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.14 E-value=6.4e-05 Score=59.24 Aligned_cols=135 Identities=20% Similarity=0.230 Sum_probs=92.3
Q ss_pred CCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC----CCCCeeEEEe
Q 024021 107 LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC----PTELFDLIFD 180 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~D~v~~ 180 (274)
.++.+||-+|+.+|.....++. ....++++|+++......-..+... +|+--+.+|+..+. .-+.+|+|+.
T Consensus 75 ~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R---~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~ 151 (231)
T COG1889 75 KEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR---PNIIPILEDARKPEKYRHLVEKVDVIYQ 151 (231)
T ss_pred CCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC---CCceeeecccCCcHHhhhhcccccEEEE
Confidence 4568999999999999988877 3468999999998776666655543 56778889988642 2356899984
Q ss_pred cccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeec
Q 024021 181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDN 249 (274)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 249 (274)
.- ..+.+..-+...+...|++||.+++..-...-.....+-..-.+++ +.|++.||++.+....
T Consensus 152 DV----AQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev-~kL~~~~f~i~e~~~L 215 (231)
T COG1889 152 DV----AQPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEV-EKLEEGGFEILEVVDL 215 (231)
T ss_pred ec----CCchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHH-HHHHhcCceeeEEecc
Confidence 21 1335667788899999999998777654433222222222223344 3455668998887654
No 244
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.12 E-value=5.6e-06 Score=62.69 Aligned_cols=133 Identities=17% Similarity=0.182 Sum_probs=93.2
Q ss_pred CCCeEEEEcCCcchhH-HHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCC--CcceEEEEcccCC---CCCCCCeeEEE
Q 024021 108 PKGRALVPGCGTGYDV-VAMAS--PERYVVGLEISDIAIKKAEELSSSLPN--AKFVSFLKADFFT---WCPTELFDLIF 179 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~-~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~~~d~~~---~~~~~~~D~v~ 179 (274)
.+.+|||+|.|--.++ ..++. +...|...|-+.+.+...++....+.. -.++..+.-+... .....+||+|+
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence 3578999999865554 34443 667999999999999888876654411 1223333333322 33456899999
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeeccc
Q 024021 180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKL 251 (274)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~ 251 (274)
+..++.. ++....+++.|..+|+|.|..++.... ..-+.+.+.+.....||.+...+.+..
T Consensus 109 aADClFf--dE~h~sLvdtIk~lL~p~g~Al~fsPR---------Rg~sL~kF~de~~~~gf~v~l~enyde 169 (201)
T KOG3201|consen 109 AADCLFF--DEHHESLVDTIKSLLRPSGRALLFSPR---------RGQSLQKFLDEVGTVGFTVCLEENYDE 169 (201)
T ss_pred eccchhH--HHHHHHHHHHHHHHhCcccceeEecCc---------ccchHHHHHHHHHhceeEEEecccHhH
Confidence 9887653 366788999999999999997665422 223789999999999999877666543
No 245
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.10 E-value=2.2e-05 Score=66.09 Aligned_cols=100 Identities=18% Similarity=0.184 Sum_probs=72.0
Q ss_pred HHHHHhcCCC-CCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCC---
Q 024021 98 IVHLHQSGAL-PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE--- 173 (274)
Q Consensus 98 ~~~~~~~~~~-~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~--- 173 (274)
...+++.... ++..|||+|+|+|.++..|++.+.+++++|.++..++..++..... ++++++.+|+.+.....
T Consensus 19 ~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~~~---~~~~vi~~D~l~~~~~~~~~ 95 (262)
T PF00398_consen 19 ADKIVDALDLSEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFASN---PNVEVINGDFLKWDLYDLLK 95 (262)
T ss_dssp HHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCTTC---SSEEEEES-TTTSCGGGHCS
T ss_pred HHHHHHhcCCCCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhhhc---ccceeeecchhccccHHhhc
Confidence 3334443333 5689999999999999999998899999999999999999987633 67999999999844333
Q ss_pred -CeeEEEecccccccChhHHHHHHHHHHhcccC
Q 024021 174 -LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKP 205 (274)
Q Consensus 174 -~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~p 205 (274)
....|+++..+ ++. ..++.++...-+.
T Consensus 96 ~~~~~vv~NlPy-~is----~~il~~ll~~~~~ 123 (262)
T PF00398_consen 96 NQPLLVVGNLPY-NIS----SPILRKLLELYRF 123 (262)
T ss_dssp SSEEEEEEEETG-TGH----HHHHHHHHHHGGG
T ss_pred CCceEEEEEecc-cch----HHHHHHHhhcccc
Confidence 56677776655 343 2345555553333
No 246
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=98.09 E-value=3.9e-05 Score=61.01 Aligned_cols=115 Identities=22% Similarity=0.230 Sum_probs=84.4
Q ss_pred cHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---CC
Q 024021 95 APIIVHLHQSGALPKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WC 170 (274)
Q Consensus 95 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~---~~ 170 (274)
.+.+....+....++++||++|-|-|.....+.+ +..+=+.+|..|..+...+....... .+|.++.+-..+ ..
T Consensus 88 tpiMha~A~ai~tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek--~nViil~g~WeDvl~~L 165 (271)
T KOG1709|consen 88 TPIMHALAEAISTKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREK--ENVIILEGRWEDVLNTL 165 (271)
T ss_pred hHHHHHHHHHHhhCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccc--cceEEEecchHhhhccc
Confidence 3444444444446689999999999999988877 34467789999999999988775543 568777775544 56
Q ss_pred CCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021 171 PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 171 ~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 213 (274)
+++.||-|+-.-.-.+. ++...+.+.+.++|||+|++-...
T Consensus 166 ~d~~FDGI~yDTy~e~y--Edl~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 166 PDKHFDGIYYDTYSELY--EDLRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred cccCcceeEeechhhHH--HHHHHHHHHHhhhcCCCceEEEec
Confidence 77889999843322222 456778889999999999876644
No 247
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=98.07 E-value=4.7e-05 Score=59.55 Aligned_cols=138 Identities=14% Similarity=0.102 Sum_probs=92.8
Q ss_pred CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChH----------HHHHHHHHhhcCCCCcceEEEEcccCCCCCC
Q 024021 106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDI----------AIKKAEELSSSLPNAKFVSFLKADFFTWCPT 172 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~----------~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 172 (274)
..++.+|+|+=.|.|.++..++. +...|+++-..+. +-..+++. ...|++.+..+.....+.
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~-----~~aN~e~~~~~~~A~~~p 120 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREP-----VYANVEVIGKPLVALGAP 120 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhh-----hhhhhhhhCCcccccCCC
Confidence 45678999999999999998877 2236666543322 11111111 123456666666665567
Q ss_pred CCeeEEEeccccccc-----ChhHHHHHHHHHHhcccCCcEEEEEEccCCCC----CCCCCcccCHHHHHHHHhcCCCcE
Q 024021 173 ELFDLIFDYTFFCAI-----EPEMRAAWAQKIKDFLKPDGELITLMFPISDH----VGGPPYKVSVSDYEEVLQPMGFQA 243 (274)
Q Consensus 173 ~~~D~v~~~~~~~~~-----~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~Gf~~ 243 (274)
+..|+++.....+.+ +......+...+.+.|||||.+++.++...-. ....-...+...+.+..+.+||..
T Consensus 121 q~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a~veaaGFkl 200 (238)
T COG4798 121 QKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRIDPAVVIAEVEAAGFKL 200 (238)
T ss_pred CcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccChHHHHHHHHhhccee
Confidence 778888876555543 34556788899999999999999988755321 112233468889999999999998
Q ss_pred EEEee
Q 024021 244 ISIVD 248 (274)
Q Consensus 244 ~~~~~ 248 (274)
.--..
T Consensus 201 ~aeS~ 205 (238)
T COG4798 201 EAESE 205 (238)
T ss_pred eeeeh
Confidence 76544
No 248
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=98.05 E-value=1.7e-06 Score=68.09 Aligned_cols=132 Identities=18% Similarity=0.211 Sum_probs=86.9
Q ss_pred CCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccccC
Q 024021 109 KGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIE 188 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~ 188 (274)
+.++||+|+|.|..+..++..--+|++.|+|..|....+...-.- -..++..+. +-+||+|.|.+++....
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk~ynV--l~~~ew~~t-------~~k~dli~clNlLDRc~ 183 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKKNYNV--LTEIEWLQT-------DVKLDLILCLNLLDRCF 183 (288)
T ss_pred CeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhhcCCce--eeehhhhhc-------CceeehHHHHHHHHhhc
Confidence 479999999999999988765557999999999998887653110 001112222 23699999998887653
Q ss_pred hhHHHHHHHHHHhcccC-CcEEEEEEc---------cCCCC---------CCCCCcccCHHHHHHHHhcCCCcEEEEeec
Q 024021 189 PEMRAAWAQKIKDFLKP-DGELITLMF---------PISDH---------VGGPPYKVSVSDYEEVLQPMGFQAISIVDN 249 (274)
Q Consensus 189 ~~~~~~~l~~~~~~L~p-gG~~~~~~~---------~~~~~---------~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 249 (274)
+ .-.+++.++.+|+| +|.+++..- +.... ..|..+.-....+.++++.+||.+......
T Consensus 184 ~--p~kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~~~rPdn~Le~~Gr~~ee~v~~~~e~lr~~g~~veawTrl 261 (288)
T KOG3987|consen 184 D--PFKLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTSGLPLRPDNLLENNGRSFEEEVARFMELLRNCGYRVEAWTRL 261 (288)
T ss_pred C--hHHHHHHHHHHhccCCCcEEEEEEecccceeecCCCCCcCCchHHHHhcCccHHHHHHHHHHHHHhcCchhhhhhcC
Confidence 2 24789999999999 787665321 11111 112222223456778899999998665554
Q ss_pred cc
Q 024021 250 KL 251 (274)
Q Consensus 250 ~~ 251 (274)
++
T Consensus 262 PY 263 (288)
T KOG3987|consen 262 PY 263 (288)
T ss_pred Ce
Confidence 43
No 249
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=98.02 E-value=2.2e-05 Score=66.50 Aligned_cols=80 Identities=19% Similarity=0.172 Sum_probs=50.3
Q ss_pred CeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcC-CCCcceEEEEcc----cCC--CCCCCCeeEEEe
Q 024021 110 GRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSL-PNAKFVSFLKAD----FFT--WCPTELFDLIFD 180 (274)
Q Consensus 110 ~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~~~~~~~d----~~~--~~~~~~~D~v~~ 180 (274)
-++||||||....-..|.. .+++++|.|+++..++.|++++..+ ++..+|+++... ++. ..+.+.||+.+|
T Consensus 104 v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftmC 183 (299)
T PF05971_consen 104 VRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTMC 183 (299)
T ss_dssp -EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEEE
T ss_pred eEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEec
Confidence 5899999999876544433 6889999999999999999999988 888889987653 332 123358999999
Q ss_pred cccccccCh
Q 024021 181 YTFFCAIEP 189 (274)
Q Consensus 181 ~~~~~~~~~ 189 (274)
+..|+.-.+
T Consensus 184 NPPFy~s~~ 192 (299)
T PF05971_consen 184 NPPFYSSQE 192 (299)
T ss_dssp -----SS--
T ss_pred CCccccChh
Confidence 999886543
No 250
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.98 E-value=0.00098 Score=54.45 Aligned_cols=155 Identities=15% Similarity=0.156 Sum_probs=87.5
Q ss_pred HHhcCCCCCCeEEEEcCCcchhH-HHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCC---CCee
Q 024021 101 LHQSGALPKGRALVPGCGTGYDV-VAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT---ELFD 176 (274)
Q Consensus 101 ~~~~~~~~~~~vLDiG~G~G~~~-~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~D 176 (274)
+.+...+.+++||-+|=..-... ..+.....+|+.+|+++..++..++.....++. ++....|+.++.|. ++||
T Consensus 37 ~~~~gdL~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~~LP~~~~~~fD 114 (243)
T PF01861_consen 37 MAERGDLEGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRDPLPEELRGKFD 114 (243)
T ss_dssp HHHTT-STT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS---TTTSS-BS
T ss_pred HHhcCcccCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecccccCCHHHhcCCC
Confidence 33445678899999984443222 233346679999999999999999998887753 99999999996654 6899
Q ss_pred EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecccccCCc
Q 024021 177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIGPR 256 (274)
Q Consensus 177 ~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~ 256 (274)
++++..+.- .+-..-++.+....|+.-|-.....++..+. + .....++++.+.+.||.+..+...--.+.+.
T Consensus 115 ~f~TDPPyT---~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~----s-~~~~~~~Q~~l~~~gl~i~dii~~Fn~Y~ga 186 (243)
T PF01861_consen 115 VFFTDPPYT---PEGLKLFLSRGIEALKGEGCAGYFGFTHKEA----S-PDKWLEVQRFLLEMGLVITDIIPDFNRYEGA 186 (243)
T ss_dssp EEEE---SS---HHHHHHHHHHHHHTB-STT-EEEEEE-TTT-------HHHHHHHHHHHHTS--EEEEEEEEEEEB---
T ss_pred EEEeCCCCC---HHHHHHHHHHHHHHhCCCCceEEEEEecCcC----c-HHHHHHHHHHHHHCCcCHHHHHhhhcccccc
Confidence 999876643 2455778899999998776433333333211 0 0113478899999999999988766666665
Q ss_pred cchhHHHHh
Q 024021 257 KGREKLGRW 265 (274)
Q Consensus 257 ~~~~~~~~~ 265 (274)
..-.....|
T Consensus 187 ~~i~~~~~~ 195 (243)
T PF01861_consen 187 EIIGNTRFW 195 (243)
T ss_dssp S-GGGSHHH
T ss_pred hhhccccee
Confidence 544433333
No 251
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.96 E-value=4.4e-06 Score=60.15 Aligned_cols=97 Identities=21% Similarity=0.149 Sum_probs=42.5
Q ss_pred EEEcCCcchhHHHhhC---CC--CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC---CCCCCeeEEEecccc
Q 024021 113 LVPGCGTGYDVVAMAS---PE--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---CPTELFDLIFDYTFF 184 (274)
Q Consensus 113 LDiG~G~G~~~~~l~~---~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~D~v~~~~~~ 184 (274)
||+|+..|..+..+++ .+ .+++++|..+. .+.+++.....+...+++++.++..+. .+.+++|+++.-..-
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGDH 79 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES--
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCCC
Confidence 6899999999888776 23 37999999985 333333333344456799999998762 224689999965421
Q ss_pred cccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021 185 CAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 213 (274)
. .+.....++.+.+.|+|||++++-+
T Consensus 80 ~---~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 80 S---YEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred C---HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 1 1344567888999999999988743
No 252
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.93 E-value=9.6e-05 Score=60.59 Aligned_cols=135 Identities=16% Similarity=0.170 Sum_probs=85.2
Q ss_pred CCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccc
Q 024021 108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC 185 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~ 185 (274)
++.+|+|||||.--++..... ++..++|+|+++.+++.........+ ...++...|+....+....|+.+..=++.
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~--~~~~~~v~Dl~~~~~~~~~DlaLllK~lp 182 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLG--VPHDARVRDLLSDPPKEPADLALLLKTLP 182 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT---CEEEEEE-TTTSHTTSEESEEEEET-HH
T ss_pred CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhC--CCcceeEeeeeccCCCCCcchhhHHHHHH
Confidence 368999999999888876665 56799999999999999998877765 45778888998877778899999887777
Q ss_pred ccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCC--CCcccCHHHHHHHHhcCCCcEEEEe
Q 024021 186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGG--PPYKVSVSDYEEVLQPMGFQAISIV 247 (274)
Q Consensus 186 ~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~Gf~~~~~~ 247 (274)
.+.....-..++-+.. + +...+++.|+.....+. .....-...+..++...||.+.+..
T Consensus 183 ~le~q~~g~g~~ll~~-~--~~~~~vVSfPtrSL~gR~~gm~~~y~~~fe~~~~~~~~~~~~~~ 243 (251)
T PF07091_consen 183 CLERQRRGAGLELLDA-L--RSPHVVVSFPTRSLGGRNKGMEQTYSAWFEALAAERGWIVDRLT 243 (251)
T ss_dssp HHHHHSTTHHHHHHHH-S--CESEEEEEEES-------TTHHHCHHHHHHHHCCTTCEEEEEEE
T ss_pred HHHHHhcchHHHHHHH-h--CCCeEEEeccccccccCccccccCHHHHHHHhcccCCceeeeee
Confidence 6643222122222222 2 34455556655432211 1112235778888888888855543
No 253
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.85 E-value=0.00021 Score=55.71 Aligned_cols=119 Identities=18% Similarity=0.228 Sum_probs=80.4
Q ss_pred CCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc-ccCC---------CCCCC
Q 024021 107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA-DFFT---------WCPTE 173 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~-d~~~---------~~~~~ 173 (274)
.++.+|||+||..|.|+....+ +...|.|||+-.- .+.. .++++.+ |+.+ ..|..
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~--------~p~~----Ga~~i~~~dvtdp~~~~ki~e~lp~r 135 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI--------EPPE----GATIIQGNDVTDPETYRKIFEALPNR 135 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec--------cCCC----CcccccccccCCHHHHHHHHHhCCCC
Confidence 4578999999999999987766 5668999998432 1222 3666666 7766 24567
Q ss_pred CeeEEEeccccccc-----Ch----hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEE
Q 024021 174 LFDLIFDYTFFCAI-----EP----EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAI 244 (274)
Q Consensus 174 ~~D~v~~~~~~~~~-----~~----~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~ 244 (274)
++|+|++...-..- +. +....++.-....++|+|.++.-.|... ....+...|++. |+.+
T Consensus 136 ~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~----------e~~~l~r~l~~~-f~~V 204 (232)
T KOG4589|consen 136 PVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGS----------EEALLQRRLQAV-FTNV 204 (232)
T ss_pred cccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCC----------chHHHHHHHHHH-hhhc
Confidence 89999986543221 10 2224455556677899999999887664 356677777764 7766
Q ss_pred EEee
Q 024021 245 SIVD 248 (274)
Q Consensus 245 ~~~~ 248 (274)
+...
T Consensus 205 k~vK 208 (232)
T KOG4589|consen 205 KKVK 208 (232)
T ss_pred EeeC
Confidence 6544
No 254
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.78 E-value=0.00023 Score=60.55 Aligned_cols=132 Identities=20% Similarity=0.205 Sum_probs=93.8
Q ss_pred CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC---CCCCCeeEEE
Q 024021 106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---CPTELFDLIF 179 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~D~v~ 179 (274)
..++.+|||++++.|.=+..++. ....+++.|+++..+...+.+....|.. ++.....|.... .....||.|+
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~-~v~~~~~D~~~~~~~~~~~~fd~Vl 161 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVF-NVIVINADARKLDPKKPESKFDRVL 161 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-S-SEEEEESHHHHHHHHHHTTTEEEEE
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCc-eEEEEeeccccccccccccccchhh
Confidence 56678999999999999888876 3469999999999999999999888764 577777777663 2234699999
Q ss_pred eccc------ccccCh--------------hHHHHHHHHHHhcc----cCCcEEEEEEccCCCCCCCCCcccCHHHHHHH
Q 024021 180 DYTF------FCAIEP--------------EMRAAWAQKIKDFL----KPDGELITLMFPISDHVGGPPYKVSVSDYEEV 235 (274)
Q Consensus 180 ~~~~------~~~~~~--------------~~~~~~l~~~~~~L----~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (274)
.... +..-++ .....+++...+.+ +|||+++..+.+.... -..+.+...
T Consensus 162 vDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~e-------ENE~vV~~f 234 (283)
T PF01189_consen 162 VDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPE-------ENEEVVEKF 234 (283)
T ss_dssp EECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGG-------GTHHHHHHH
T ss_pred cCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHH-------HHHHHHHHH
Confidence 7422 221111 11257889999999 9999999877554311 135566667
Q ss_pred HhcC-CCcEEE
Q 024021 236 LQPM-GFQAIS 245 (274)
Q Consensus 236 l~~~-Gf~~~~ 245 (274)
++.+ .|..+.
T Consensus 235 l~~~~~~~l~~ 245 (283)
T PF01189_consen 235 LKRHPDFELVP 245 (283)
T ss_dssp HHHSTSEEEEC
T ss_pred HHhCCCcEEEe
Confidence 7776 455544
No 255
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.77 E-value=8.5e-05 Score=56.38 Aligned_cols=57 Identities=21% Similarity=0.062 Sum_probs=47.7
Q ss_pred eEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024021 111 RALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT 168 (274)
Q Consensus 111 ~vLDiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 168 (274)
+++|+|||.|..+..+++. +.+++++|.++.+++.++++...++.. +++++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~-~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLP-NVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEEeeeeC
Confidence 4899999999999988874 347999999999999999998877653 58888877754
No 256
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.75 E-value=0.00011 Score=65.73 Aligned_cols=103 Identities=18% Similarity=0.131 Sum_probs=74.0
Q ss_pred CCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC---CC---CCee-EEEec
Q 024021 109 KGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC---PT---ELFD-LIFDY 181 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~---~~~D-~v~~~ 181 (274)
+..++|+.||||..+..+++.-.+|+|+|++++++..|+.++..++.+ |.+|+++-..+.. .. +.=+ +++..
T Consensus 384 ~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~Ngis-Na~Fi~gqaE~~~~sl~~~~~~~~~~v~iiD 462 (534)
T KOG2187|consen 384 DKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQINGIS-NATFIVGQAEDLFPSLLTPCCDSETLVAIID 462 (534)
T ss_pred CcEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchhcCcc-ceeeeecchhhccchhcccCCCCCceEEEEC
Confidence 468999999999999999998889999999999999999999998875 6999999555421 11 1234 33322
Q ss_pred ccccccChhHHHHHHHHHHhcccCCcEEEEEEccC
Q 024021 182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (274)
Q Consensus 182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 216 (274)
..=. ..-..++..+.+.-.+--.+++.+...
T Consensus 463 PpR~----Glh~~~ik~l~~~~~~~rlvyvSCn~~ 493 (534)
T KOG2187|consen 463 PPRK----GLHMKVIKALRAYKNPRRLVYVSCNPH 493 (534)
T ss_pred CCcc----cccHHHHHHHHhccCccceEEEEcCHH
Confidence 1111 122356677777666777777776443
No 257
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=97.72 E-value=0.0011 Score=57.72 Aligned_cols=142 Identities=14% Similarity=0.144 Sum_probs=81.4
Q ss_pred CCeEEEEcCCcchhHHHhhC------------CC------CeEEEEeCChHHHHHHHHHhhcC------CCCcceEEEEc
Q 024021 109 KGRALVPGCGTGYDVVAMAS------------PE------RYVVGLEISDIAIKKAEELSSSL------PNAKFVSFLKA 164 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l~~------------~~------~~v~~vD~~~~~~~~a~~~~~~~------~~~~~~~~~~~ 164 (274)
..+|+|+||.+|.+++.+.. .+ .+|+--|+-..-.+..-+.++.. ...--+..+.+
T Consensus 17 ~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvpg 96 (334)
T PF03492_consen 17 PFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVPG 96 (334)
T ss_dssp EEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEES
T ss_pred ceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecCc
Confidence 36999999999999876543 12 47888888433333222222111 00011344557
Q ss_pred ccCC-CCCCCCeeEEEecccccccCh------h-------------------------------HHHHHHHHHHhcccCC
Q 024021 165 DFFT-WCPTELFDLIFDYTFFCAIEP------E-------------------------------MRAAWAQKIKDFLKPD 206 (274)
Q Consensus 165 d~~~-~~~~~~~D~v~~~~~~~~~~~------~-------------------------------~~~~~l~~~~~~L~pg 206 (274)
.+.. ..|.++.|+++++..+|+++. + ++..+|+.=++-|+||
T Consensus 97 SFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~G 176 (334)
T PF03492_consen 97 SFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELVPG 176 (334)
T ss_dssp -TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEEEE
T ss_pred hhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheeccC
Confidence 7776 788899999999999888631 0 1134455555678999
Q ss_pred cEEEEEEccCCCCCC----------------------------------CCCcccCHHHHHHHHhcCC-CcEEEEeecc
Q 024021 207 GELITLMFPISDHVG----------------------------------GPPYKVSVSDYEEVLQPMG-FQAISIVDNK 250 (274)
Q Consensus 207 G~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~l~~~G-f~~~~~~~~~ 250 (274)
|++++...+..+... -|.|..+.+|+.+.+++.| |++..++...
T Consensus 177 G~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~~gsF~I~~le~~~ 255 (334)
T PF03492_consen 177 GRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEEEGSFEIEKLELFE 255 (334)
T ss_dssp EEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHHHHHTSEEEEEEEEEE
T ss_pred cEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHHhcCCCEEEEEEEEEe
Confidence 999998876654200 1234468999999999888 8877766655
No 258
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=97.70 E-value=0.0012 Score=58.24 Aligned_cols=142 Identities=16% Similarity=0.217 Sum_probs=89.1
Q ss_pred CCeEEEEcCCcchhHHHhhC-----------------CCCeEEEEeCChHHHHHHHHHhhcCC------------CCcc-
Q 024021 109 KGRALVPGCGTGYDVVAMAS-----------------PERYVVGLEISDIAIKKAEELSSSLP------------NAKF- 158 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l~~-----------------~~~~v~~vD~~~~~~~~a~~~~~~~~------------~~~~- 158 (274)
..+|+|+|||+|.+++.+.. +..+|..-|+-..-.+..-+.++... ...+
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 46899999999988755432 23577777774433333333322100 0011
Q ss_pred --eEEEEcccCC-CCCCCCeeEEEecccccccCh---h---------------------------------HHHHHHHHH
Q 024021 159 --VSFLKADFFT-WCPTELFDLIFDYTFFCAIEP---E---------------------------------MRAAWAQKI 199 (274)
Q Consensus 159 --~~~~~~d~~~-~~~~~~~D~v~~~~~~~~~~~---~---------------------------------~~~~~l~~~ 199 (274)
+..+.+.+.. ..|.++.++++++..+|+++. + ++..+|+.=
T Consensus 144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~R 223 (386)
T PLN02668 144 YFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRAR 223 (386)
T ss_pred eEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 1223345554 788899999999999988742 1 123445555
Q ss_pred HhcccCCcEEEEEEccCCCCC------------------------------------CCCCcccCHHHHHHHHhcCC-Cc
Q 024021 200 KDFLKPDGELITLMFPISDHV------------------------------------GGPPYKVSVSDYEEVLQPMG-FQ 242 (274)
Q Consensus 200 ~~~L~pgG~~~~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~l~~~G-f~ 242 (274)
.+-|.|||.+++...+..... .-|.|..+.+|+.+.++..| |.
T Consensus 224 a~ELvpGG~mvl~~~Gr~~~~~~~~~~~~~~~~~~l~~al~dlv~eGlI~eek~dsFniP~Y~ps~eEv~~~Ie~~gsF~ 303 (386)
T PLN02668 224 AQEMKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLVTSEKRDSFNIPVYAPSLQDFKEVVEANGSFA 303 (386)
T ss_pred HHHhccCcEEEEEEecCCCCCcccCCchhHHHHHHHHHHHHHHHHcCCCCHHHHhcccCcccCCCHHHHHHHHhhcCCEE
Confidence 677899999999876653210 01234458999999999988 87
Q ss_pred EEEEeecc
Q 024021 243 AISIVDNK 250 (274)
Q Consensus 243 ~~~~~~~~ 250 (274)
+..++...
T Consensus 304 I~~le~~~ 311 (386)
T PLN02668 304 IDKLEVFK 311 (386)
T ss_pred eeeeEEee
Confidence 77777644
No 259
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.67 E-value=0.00034 Score=55.21 Aligned_cols=103 Identities=20% Similarity=0.285 Sum_probs=65.7
Q ss_pred CeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCC------CCcceEEEEcccCCCCCCCCeeEEEec
Q 024021 110 GRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLP------NAKFVSFLKADFFTWCPTELFDLIFDY 181 (274)
Q Consensus 110 ~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~------~~~~~~~~~~d~~~~~~~~~~D~v~~~ 181 (274)
-...|||||-|.++..|+. +..-+.|.|+--...+..++++.... .-.++.....+.....|. -|.--..+
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn-~f~kgqLs 140 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPN-FFEKGQLS 140 (249)
T ss_pred ceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccc-hhhhcccc
Confidence 4689999999999999988 67789999998888777777665432 123455565555542221 01111111
Q ss_pred ccccccChhHH-----------HHHHHHHHhcccCCcEEEEEE
Q 024021 182 TFFCAIEPEMR-----------AAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 182 ~~~~~~~~~~~-----------~~~l~~~~~~L~pgG~~~~~~ 213 (274)
-.+..+|++.. ..++.+..-+|++||.++..+
T Consensus 141 kmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 141 KMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred cceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 11122333222 466788888999999999876
No 260
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.67 E-value=0.00044 Score=51.77 Aligned_cols=118 Identities=18% Similarity=0.213 Sum_probs=87.2
Q ss_pred ccHHHHHHHhcC-CCCCCeEEEEcCCcchhHHHhhCCC-CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC
Q 024021 94 PAPIIVHLHQSG-ALPKGRALVPGCGTGYDVVAMASPE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP 171 (274)
Q Consensus 94 ~~~~~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 171 (274)
..+.++..+... ..+.++.+|+|+|.|....+.++.| ...+|+|++|-.+..++-+.-..+...+..|..-|+.+...
T Consensus 57 tteQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl 136 (199)
T KOG4058|consen 57 TTEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDL 136 (199)
T ss_pred cHHHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccc
Confidence 344455555554 3444799999999999999998877 48999999999999999888888777889999999988443
Q ss_pred CCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCC
Q 024021 172 TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS 217 (274)
Q Consensus 172 ~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 217 (274)
. .|..|+...+ +..+..+-.++..-+..|..++..-|+..
T Consensus 137 ~-dy~~vviFga-----es~m~dLe~KL~~E~p~nt~vvacRFPLP 176 (199)
T KOG4058|consen 137 R-DYRNVVIFGA-----ESVMPDLEDKLRTELPANTRVVACRFPLP 176 (199)
T ss_pred c-ccceEEEeeh-----HHHHhhhHHHHHhhCcCCCeEEEEecCCC
Confidence 2 2444443232 23445566788878888999888776553
No 261
>PRK10742 putative methyltransferase; Provisional
Probab=97.65 E-value=0.00034 Score=57.57 Aligned_cols=77 Identities=16% Similarity=0.054 Sum_probs=63.6
Q ss_pred eEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcC------C--CCcceEEEEcccCCCC--CCCCeeEEEe
Q 024021 111 RALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSL------P--NAKFVSFLKADFFTWC--PTELFDLIFD 180 (274)
Q Consensus 111 ~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~------~--~~~~~~~~~~d~~~~~--~~~~~D~v~~ 180 (274)
+|||+-+|+|..++.++..|++|+++|-++......+.++... + ...+++++.+|..+.. ....||+|+.
T Consensus 91 ~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDVVYl 170 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVVYL 170 (250)
T ss_pred EEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCcEEEE
Confidence 8999999999999999999999999999999999888877653 1 1256889999987732 2347999999
Q ss_pred ccccccc
Q 024021 181 YTFFCAI 187 (274)
Q Consensus 181 ~~~~~~~ 187 (274)
-..|.+-
T Consensus 171 DPMfp~~ 177 (250)
T PRK10742 171 DPMFPHK 177 (250)
T ss_pred CCCCCCC
Confidence 8887763
No 262
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.64 E-value=0.001 Score=55.91 Aligned_cols=79 Identities=18% Similarity=0.142 Sum_probs=61.0
Q ss_pred HHHhcC-CCCCCeEEEEcCCcchhHHHhhCC---CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC------
Q 024021 100 HLHQSG-ALPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW------ 169 (274)
Q Consensus 100 ~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~------ 169 (274)
+.+..+ ..+++..+|.--|.|+.+..+++. ..+++++|.+|.+++.|++.....+ +++++++.++.+.
T Consensus 14 E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~~~l~~ 91 (314)
T COG0275 14 EVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLAEALKE 91 (314)
T ss_pred HHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHHHHHHHHh
Confidence 344433 455689999999999999999883 3579999999999999999987754 6899999988761
Q ss_pred CCCCCeeEEEe
Q 024021 170 CPTELFDLIFD 180 (274)
Q Consensus 170 ~~~~~~D~v~~ 180 (274)
...+++|.|+.
T Consensus 92 ~~i~~vDGiL~ 102 (314)
T COG0275 92 LGIGKVDGILL 102 (314)
T ss_pred cCCCceeEEEE
Confidence 12346777765
No 263
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=97.47 E-value=0.00023 Score=62.36 Aligned_cols=100 Identities=11% Similarity=0.018 Sum_probs=68.6
Q ss_pred CeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC--CCCCCCeeEEEecccccc
Q 024021 110 GRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT--WCPTELFDLIFDYTFFCA 186 (274)
Q Consensus 110 ~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~D~v~~~~~~~~ 186 (274)
..|||+|+|||.+++..++.|+ .|+++|.-..|.+.|++....++++++++.+.---.+ ..+..+.|+++.-.+.--
T Consensus 68 v~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~e~fdtE 147 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVREDFDTE 147 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhHhhhhhh
Confidence 4789999999999998888777 8999999999999999999999999999998765554 222234566654222111
Q ss_pred c-ChhHHHHHHHHHHhcccCCcEE
Q 024021 187 I-EPEMRAAWAQKIKDFLKPDGEL 209 (274)
Q Consensus 187 ~-~~~~~~~~l~~~~~~L~pgG~~ 209 (274)
+ -...++.+-.....++++|...
T Consensus 148 ligeGalps~qhAh~~L~~~nc~~ 171 (636)
T KOG1501|consen 148 LIGEGALPSLQHAHDMLLVDNCKT 171 (636)
T ss_pred hhccccchhHHHHHHHhcccCCee
Confidence 1 1112233333444555666543
No 264
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=97.41 E-value=0.0037 Score=49.98 Aligned_cols=118 Identities=16% Similarity=0.106 Sum_probs=70.5
Q ss_pred HHHHHHHhcCCC-CCCeEEEEcCCcchhHHHh--hCCC--CeEEEEeCChHHHHHHHHHhhcCC----------------
Q 024021 96 PIIVHLHQSGAL-PKGRALVPGCGTGYDVVAM--ASPE--RYVVGLEISDIAIKKAEELSSSLP---------------- 154 (274)
Q Consensus 96 ~~~~~~~~~~~~-~~~~vLDiG~G~G~~~~~l--~~~~--~~v~~vD~~~~~~~~a~~~~~~~~---------------- 154 (274)
+.+++.+..... .+-++.|..||.|+++..+ ++.. ..|++.|+++++++.|++|+....
T Consensus 38 Ei~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e 117 (246)
T PF11599_consen 38 EIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYE 117 (246)
T ss_dssp HHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHH
Confidence 334444444422 3359999999999998655 3332 389999999999999988765543
Q ss_pred -------------------------CCcceEEEEcccCCC------CCCCCeeEEEeccccccc-------ChhHHHHHH
Q 024021 155 -------------------------NAKFVSFLKADFFTW------CPTELFDLIFDYTFFCAI-------EPEMRAAWA 196 (274)
Q Consensus 155 -------------------------~~~~~~~~~~d~~~~------~~~~~~D~v~~~~~~~~~-------~~~~~~~~l 196 (274)
...-..+...|++++ ......|+|+..-.+..+ +.+-...++
T Consensus 118 ~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml 197 (246)
T PF11599_consen 118 QYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQML 197 (246)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHH
T ss_pred HcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHH
Confidence 111256788888872 223347999998776554 223457899
Q ss_pred HHHHhcccCCcEEEEEE
Q 024021 197 QKIKDFLKPDGELITLM 213 (274)
Q Consensus 197 ~~~~~~L~pgG~~~~~~ 213 (274)
..++.+|.+++++.+..
T Consensus 198 ~~l~~vLp~~sVV~v~~ 214 (246)
T PF11599_consen 198 NSLAPVLPERSVVAVSD 214 (246)
T ss_dssp HHHHCCS-TT-EEEEEE
T ss_pred HHHHhhCCCCcEEEEec
Confidence 99999996556666644
No 265
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.41 E-value=0.001 Score=56.78 Aligned_cols=73 Identities=21% Similarity=0.179 Sum_probs=59.3
Q ss_pred CCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC------CCCCCeeEE
Q 024021 107 LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW------CPTELFDLI 178 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~------~~~~~~D~v 178 (274)
.++..++|.-+|.|+.+..+++ +..+|+|+|.++.+++.+++++... ..++.++++++.+. ...+++|.|
T Consensus 19 ~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~~l~~~l~~~~~~~vDgI 96 (305)
T TIGR00006 19 KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFANFFEHLDELLVTKIDGI 96 (305)
T ss_pred CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHHHHHHHHHhcCCCcccEE
Confidence 4567999999999999998887 3479999999999999999987654 36899999998762 123568888
Q ss_pred Eec
Q 024021 179 FDY 181 (274)
Q Consensus 179 ~~~ 181 (274)
+..
T Consensus 97 l~D 99 (305)
T TIGR00006 97 LVD 99 (305)
T ss_pred EEe
Confidence 864
No 266
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=97.40 E-value=0.011 Score=49.59 Aligned_cols=136 Identities=15% Similarity=0.141 Sum_probs=93.8
Q ss_pred CeEEEEcCCcchhHHHhhCC-CCeEEEEeCChHHHHHHHHHhhcCC--CCcceEEEEcccCC-C--------CCCCCeeE
Q 024021 110 GRALVPGCGTGYDVVAMASP-ERYVVGLEISDIAIKKAEELSSSLP--NAKFVSFLKADFFT-W--------CPTELFDL 177 (274)
Q Consensus 110 ~~vLDiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~-~--------~~~~~~D~ 177 (274)
..|+.+|||-=.-...+..+ +.+++=+|. |+.++.-++.+...+ ...+.+++..|+.. + ......-+
T Consensus 83 ~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ptl 161 (260)
T TIGR00027 83 RQVVILGAGLDTRAYRLPWPDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAPTA 161 (260)
T ss_pred cEEEEeCCccccHHHhcCCCCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCCee
Confidence 57999999875555555333 456666665 566666666665432 23578899999863 1 11234568
Q ss_pred EEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC------------------CCCCCcccCHHHHHHHHhcC
Q 024021 178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH------------------VGGPPYKVSVSDYEEVLQPM 239 (274)
Q Consensus 178 v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~l~~~ 239 (274)
+++-+++.|++++....+++.+.+...||+.+++...+..+. .....+.++.+++.++|..+
T Consensus 162 ~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 241 (260)
T TIGR00027 162 WLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRPLDGEWRAGMRAPVYHAARGVDGSGLVFGIDRADVAEWLAER 241 (260)
T ss_pred eeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccccchhHHHHHHHHHHHhhhcccccccccCCChhhHHHHHHHC
Confidence 888899999999999999999999888999888755432110 01123446789999999999
Q ss_pred CCcEEEE
Q 024021 240 GFQAISI 246 (274)
Q Consensus 240 Gf~~~~~ 246 (274)
||+....
T Consensus 242 Gw~~~~~ 248 (260)
T TIGR00027 242 GWRASEH 248 (260)
T ss_pred CCeeecC
Confidence 9998665
No 267
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.30 E-value=0.00061 Score=58.22 Aligned_cols=110 Identities=17% Similarity=0.220 Sum_probs=69.1
Q ss_pred CCCCCeEEEEcCCcchhHHHhhC--CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccC----CCCCCCCeeEE
Q 024021 106 ALPKGRALVPGCGTGYDVVAMAS--PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFF----TWCPTELFDLI 178 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~--~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~----~~~~~~~~D~v 178 (274)
+..+.+|||+|.|.|.-+.++-. +.. .++.++.|+..-+..-....... .........|+. .......|+++
T Consensus 111 dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~-t~~td~r~s~vt~dRl~lp~ad~ytl~ 189 (484)
T COG5459 111 DFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVS-TEKTDWRASDVTEDRLSLPAADLYTLA 189 (484)
T ss_pred CcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcc-cccCCCCCCccchhccCCCccceeehh
Confidence 44567899999999987766654 443 68888888865555444332221 112223333333 24445567777
Q ss_pred Eeccccccc-ChhHHHHHHHHHHhcccCCcEEEEEEccC
Q 024021 179 FDYTFFCAI-EPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (274)
Q Consensus 179 ~~~~~~~~~-~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 216 (274)
+..+=+-+. .+......++.+..++.|||.+++++.+.
T Consensus 190 i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGt 228 (484)
T COG5459 190 IVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGT 228 (484)
T ss_pred hhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCC
Confidence 765433222 22345568999999999999999998654
No 268
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=97.30 E-value=0.0018 Score=61.81 Aligned_cols=124 Identities=20% Similarity=0.209 Sum_probs=81.0
Q ss_pred CCeEEEEcCCcchhHHHhhC---------C-----CCeEEEEeCCh---HHHHHHH-----------HHhhc-----CCC
Q 024021 109 KGRALVPGCGTGYDVVAMAS---------P-----ERYVVGLEISD---IAIKKAE-----------ELSSS-----LPN 155 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l~~---------~-----~~~v~~vD~~~---~~~~~a~-----------~~~~~-----~~~ 155 (274)
.-+|+|+|-|+|.+.....+ + ..+++++|..| +.+..+- +.... .+.
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 137 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC 137 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence 46999999999998654431 1 23899999754 2222221 11111 111
Q ss_pred --------CcceEEEEcccCCCCC--CCCeeEEEecccccccChhHH-HHHHHHHHhcccCCcEEEEEEccCCCCCCCCC
Q 024021 156 --------AKFVSFLKADFFTWCP--TELFDLIFDYTFFCAIEPEMR-AAWAQKIKDFLKPDGELITLMFPISDHVGGPP 224 (274)
Q Consensus 156 --------~~~~~~~~~d~~~~~~--~~~~D~v~~~~~~~~~~~~~~-~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~ 224 (274)
.-++++..+|+.+..+ ...+|+++..++--.-.++.+ ..++..+.++++|||.+...+
T Consensus 138 ~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t----------- 206 (662)
T PRK01747 138 HRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATFT----------- 206 (662)
T ss_pred eEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEee-----------
Confidence 0145567788876222 246999997654332223332 578999999999999998765
Q ss_pred cccCHHHHHHHHhcCCCcEEEE
Q 024021 225 YKVSVSDYEEVLQPMGFQAISI 246 (274)
Q Consensus 225 ~~~~~~~~~~~l~~~Gf~~~~~ 246 (274)
....+++.|..+||.+.+.
T Consensus 207 ---~a~~vr~~l~~~GF~v~~~ 225 (662)
T PRK01747 207 ---SAGFVRRGLQEAGFTVRKV 225 (662)
T ss_pred ---hHHHHHHHHHHcCCeeeec
Confidence 6788999999999998655
No 269
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=97.25 E-value=0.00081 Score=59.41 Aligned_cols=100 Identities=18% Similarity=0.054 Sum_probs=74.0
Q ss_pred CCeEEEEcCCcchhHHHhhC--CC-CeEEEEeCChHHHHHHHHHhhcCCCCc-ceEEEEcccCCCC--CCCCeeEEEecc
Q 024021 109 KGRALVPGCGTGYDVVAMAS--PE-RYVVGLEISDIAIKKAEELSSSLPNAK-FVSFLKADFFTWC--PTELFDLIFDYT 182 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l~~--~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~-~~~~~~~d~~~~~--~~~~~D~v~~~~ 182 (274)
+.++||.-+|+|.=++..+. .+ .+|+.-|+++++++..++|+..+++.+ ++++...|+.... ....||+|=...
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlDP 129 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLDP 129 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE--
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeCC
Confidence 45899999999988876654 34 389999999999999999999998877 6888888887754 567899987322
Q ss_pred cccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021 183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (274)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 214 (274)
. .....+++...+.++.||++.++.-
T Consensus 130 f------GSp~pfldsA~~~v~~gGll~vTaT 155 (377)
T PF02005_consen 130 F------GSPAPFLDSALQAVKDGGLLCVTAT 155 (377)
T ss_dssp S------S--HHHHHHHHHHEEEEEEEEEEE-
T ss_pred C------CCccHhHHHHHHHhhcCCEEEEecc
Confidence 2 2234688999999999999998763
No 270
>PHA01634 hypothetical protein
Probab=97.22 E-value=0.0031 Score=46.08 Aligned_cols=49 Identities=18% Similarity=0.186 Sum_probs=43.7
Q ss_pred CCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCC
Q 024021 106 ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLP 154 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~ 154 (274)
...+.+|+|||++.|..+++++..|+ .|+++|.++...+..+++...+.
T Consensus 26 dvk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nn 75 (156)
T PHA01634 26 NVYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFN 75 (156)
T ss_pred eecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhhe
Confidence 45678999999999999999999888 89999999999999999876653
No 271
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=97.21 E-value=0.0054 Score=52.05 Aligned_cols=127 Identities=14% Similarity=0.021 Sum_probs=80.6
Q ss_pred eEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC---CCCeeEEEecccccc
Q 024021 111 RALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP---TELFDLIFDYTFFCA 186 (274)
Q Consensus 111 ~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~D~v~~~~~~~~ 186 (274)
+++|+.||.|.....+...|. .+.++|+++.+++..+.+.+.. .+.+|+.+... ...+|+++.......
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~~-------~~~~Di~~~~~~~~~~~~D~l~~gpPCq~ 74 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPNK-------LIEGDITKIDEKDFIPDIDLLTGGFPCQP 74 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCCC-------CccCccccCchhhcCCCCCEEEeCCCChh
Confidence 689999999999998888888 5788999999999998887432 45667766322 346999998766544
Q ss_pred cCh--------hHHHHHHH---HHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024021 187 IEP--------EMRAAWAQ---KIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD 248 (274)
Q Consensus 187 ~~~--------~~~~~~l~---~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 248 (274)
++. +.+..++. ++.+.++|. +++.+....-... ........+.+.|++.||.+....-
T Consensus 75 fS~ag~~~~~~d~r~~L~~~~~~~i~~~~P~--~~v~ENV~g~~~~--~~~~~~~~i~~~l~~~GY~~~~~~l 143 (275)
T cd00315 75 FSIAGKRKGFEDTRGTLFFEIIRILKEKKPK--YFLLENVKGLLTH--DNGNTLKVILNTLEELGYNVYWKLL 143 (275)
T ss_pred hhHHhhcCCCCCchHHHHHHHHHHHHhcCCC--EEEEEcCcchhcc--CchHHHHHHHHHHHhCCcEEEEEEE
Confidence 321 11121222 333344554 5555533321110 0112467888899999998755433
No 272
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.20 E-value=0.0018 Score=51.93 Aligned_cols=139 Identities=18% Similarity=0.145 Sum_probs=68.7
Q ss_pred HHHHHhcCCCCCCeEEEEcCCcchhHHHhhC------CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-
Q 024021 98 IVHLHQSGALPKGRALVPGCGTGYDVVAMAS------PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC- 170 (274)
Q Consensus 98 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~- 170 (274)
+.+++. ..++..|+|+|.-.|+.+..++. ...+|+|+|++....+. ...+...+.++++++++|..++.
T Consensus 24 ~qeli~--~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~--~a~e~hp~~~rI~~i~Gds~d~~~ 99 (206)
T PF04989_consen 24 YQELIW--ELKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNR--KAIESHPMSPRITFIQGDSIDPEI 99 (206)
T ss_dssp HHHHHH--HH--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG----TTEEEEES-SSSTHH
T ss_pred HHHHHH--HhCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhch--HHHhhccccCceEEEECCCCCHHH
Confidence 444444 35678999999999999877764 45699999996443322 22233344578999999987621
Q ss_pred --------CCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC----CCCCCcc---cCHHHHHHH
Q 024021 171 --------PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH----VGGPPYK---VSVSDYEEV 235 (274)
Q Consensus 171 --------~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~----~~~~~~~---~~~~~~~~~ 235 (274)
......+|+.-.. |.. +.....++....++++|+++++.+....+. ....++. .....+.+.
T Consensus 100 ~~~v~~~~~~~~~vlVilDs~--H~~-~hvl~eL~~y~plv~~G~Y~IVeDt~~~~~~~~~~~~~~w~~g~~p~~av~~f 176 (206)
T PF04989_consen 100 VDQVRELASPPHPVLVILDSS--HTH-EHVLAELEAYAPLVSPGSYLIVEDTIIEDWPESWFPDRPWGPGNNPKTAVKEF 176 (206)
T ss_dssp HHTSGSS----SSEEEEESS-------SSHHHHHHHHHHT--TT-EEEETSHHHHHHHHS-------------HHHHHHH
T ss_pred HHHHHHhhccCCceEEEECCC--ccH-HHHHHHHHHhCccCCCCCEEEEEeccccccccccccccchhhhhHHHHHHHHH
Confidence 1123445553222 111 122456778999999999999854322110 1111121 246777888
Q ss_pred HhcCC-CcE
Q 024021 236 LQPMG-FQA 243 (274)
Q Consensus 236 l~~~G-f~~ 243 (274)
|+++. |.+
T Consensus 177 L~~~~~f~i 185 (206)
T PF04989_consen 177 LAEHPDFEI 185 (206)
T ss_dssp HHTTTTEEE
T ss_pred HHHCCCcEe
Confidence 88776 443
No 273
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.19 E-value=0.00087 Score=60.11 Aligned_cols=124 Identities=10% Similarity=0.048 Sum_probs=81.6
Q ss_pred CeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC--CCCCCCeeEEEeccccccc
Q 024021 110 GRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT--WCPTELFDLIFDYTFFCAI 187 (274)
Q Consensus 110 ~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~D~v~~~~~~~~~ 187 (274)
..|+|..+|.|.++.+|.+.. |+....-|..-...-..+-..|+. -.--|..+ ..-+.+||+|.+.++|...
T Consensus 367 RNVMDMnAg~GGFAAAL~~~~--VWVMNVVP~~~~ntL~vIydRGLI----G~yhDWCE~fsTYPRTYDLlHA~~lfs~~ 440 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDDP--VWVMNVVPVSGPNTLPVIYDRGLI----GVYHDWCEAFSTYPRTYDLLHADGLFSLY 440 (506)
T ss_pred eeeeeecccccHHHHHhccCC--ceEEEecccCCCCcchhhhhcccc----hhccchhhccCCCCcchhheehhhhhhhh
Confidence 689999999999999998754 444444332110011111111211 12224444 2335789999999998875
Q ss_pred Ch-hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024021 188 EP-EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNK 250 (274)
Q Consensus 188 ~~-~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 250 (274)
.. -....++-++.|+|+|||.+++-+... -..++..+++...|+........
T Consensus 441 ~~rC~~~~illEmDRILRP~G~~iiRD~~~-----------vl~~v~~i~~~lrW~~~~~d~e~ 493 (506)
T PF03141_consen 441 KDRCEMEDILLEMDRILRPGGWVIIRDTVD-----------VLEKVKKIAKSLRWEVRIHDTED 493 (506)
T ss_pred cccccHHHHHHHhHhhcCCCceEEEeccHH-----------HHHHHHHHHHhCcceEEEEecCC
Confidence 33 356788999999999999999965221 46788889999889887666544
No 274
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=97.11 E-value=0.0013 Score=59.14 Aligned_cols=103 Identities=22% Similarity=0.272 Sum_probs=76.3
Q ss_pred CeEEEEcCCcchhHHHhhC------CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCC-CCeeEEEecc
Q 024021 110 GRALVPGCGTGYDVVAMAS------PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT-ELFDLIFDYT 182 (274)
Q Consensus 110 ~~vLDiG~G~G~~~~~l~~------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~D~v~~~~ 182 (274)
-.|+-+|+|-|-+.....+ +..+++++|-+|.++.-.+. .....+.++|+++..|++.+.++ ++.|++++-
T Consensus 369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSE- 446 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDMRKWNAPREQADIIVSE- 446 (649)
T ss_pred EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeEEEeccccccCCchhhccchHHH-
Confidence 3688999999988754433 45589999999999887776 33344567899999999996664 889999863
Q ss_pred ccccc-ChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021 183 FFCAI-EPEMRAAWAQKIKDFLKPDGELITLMF 214 (274)
Q Consensus 183 ~~~~~-~~~~~~~~l~~~~~~L~pgG~~~~~~~ 214 (274)
.++.+ +.+.-++.++.+-+.|||+|+.+=..+
T Consensus 447 LLGSFGDNELSPECLDG~q~fLkpdgIsIP~sY 479 (649)
T KOG0822|consen 447 LLGSFGDNELSPECLDGAQKFLKPDGISIPSSY 479 (649)
T ss_pred hhccccCccCCHHHHHHHHhhcCCCceEccchh
Confidence 22222 334446778899999999988765443
No 275
>PRK11524 putative methyltransferase; Provisional
Probab=97.08 E-value=0.0017 Score=55.35 Aligned_cols=60 Identities=18% Similarity=0.206 Sum_probs=53.4
Q ss_pred CccHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhc
Q 024021 93 QPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSS 152 (274)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~ 152 (274)
.|...+..++.....++..|||.-||+|..+.+..+.|.+++|+|++++-++.|++++..
T Consensus 193 kP~~L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 193 KPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred ChHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHh
Confidence 446677788887778899999999999999999999999999999999999999999743
No 276
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=97.05 E-value=0.0092 Score=54.80 Aligned_cols=124 Identities=19% Similarity=0.195 Sum_probs=84.2
Q ss_pred CccHHHHHHHhcCCC-CCCeEEEEcCCcchhHHHhhC----C--CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcc
Q 024021 93 QPAPIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMAS----P--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD 165 (274)
Q Consensus 93 ~~~~~~~~~~~~~~~-~~~~vLDiG~G~G~~~~~l~~----~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d 165 (274)
+|+....-++..+.. +..+|+|..||+|.+.....+ . ...++|.|+++.....|+.+.-.++....+....+|
T Consensus 170 TP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~d 249 (489)
T COG0286 170 TPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGD 249 (489)
T ss_pred ChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccc
Confidence 344444444443332 446999999999999876654 2 267999999999999999998777654345666666
Q ss_pred cCC-CC-----CCCCeeEEEecccccc--cC--------------------h-hHHHHHHHHHHhcccCCcEEEEEEccC
Q 024021 166 FFT-WC-----PTELFDLIFDYTFFCA--IE--------------------P-EMRAAWAQKIKDFLKPDGELITLMFPI 216 (274)
Q Consensus 166 ~~~-~~-----~~~~~D~v~~~~~~~~--~~--------------------~-~~~~~~l~~~~~~L~pgG~~~~~~~~~ 216 (274)
... +. ....||.|+++..+.. +. . ..-..++.++...|+|||+.-++....
T Consensus 250 tl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~g 329 (489)
T COG0286 250 TLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPDG 329 (489)
T ss_pred cccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecCC
Confidence 554 21 2356999999887741 10 0 111578899999999998666555433
No 277
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=97.03 E-value=0.011 Score=51.17 Aligned_cols=56 Identities=16% Similarity=0.065 Sum_probs=42.3
Q ss_pred HHHHHhcCCCC-CCeEEEEcCCcchhHHHhhC----------CCCeEEEEeCChHHHHHHHHHhhcC
Q 024021 98 IVHLHQSGALP-KGRALVPGCGTGYDVVAMAS----------PERYVVGLEISDIAIKKAEELSSSL 153 (274)
Q Consensus 98 ~~~~~~~~~~~-~~~vLDiG~G~G~~~~~l~~----------~~~~v~~vD~~~~~~~~a~~~~~~~ 153 (274)
+.+.+.....| +..++|+|+|+|.++..+++ ...++..||+|++....-++++...
T Consensus 66 ~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 66 FLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred HHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 44444444454 36899999999999887765 2458999999999998888877654
No 278
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.94 E-value=0.00083 Score=50.74 Aligned_cols=80 Identities=14% Similarity=0.121 Sum_probs=56.9
Q ss_pred CCCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC-----------CCCCCcc------cCHHH
Q 024021 169 WCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH-----------VGGPPYK------VSVSD 231 (274)
Q Consensus 169 ~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~-----------~~~~~~~------~~~~~ 231 (274)
.+.+++.|+|++.++++|+..+....+++.+++.|+|||++-+........ ..++.-+ .+-+.
T Consensus 42 ~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f~~~~Y~~~vqvggpgpndhP~~r~v~t~r~ 121 (185)
T COG4627 42 MFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKFLDWLYQHDVQVGGPGPNDHPLHRIVKTMRM 121 (185)
T ss_pred cCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcchhHHHHhhhhhccCCCCCCCcHHHHHHHHHH
Confidence 566789999999999999987777889999999999999999877554311 1122211 13455
Q ss_pred HHHHHhcCCCcEEEEee
Q 024021 232 YEEVLQPMGFQAISIVD 248 (274)
Q Consensus 232 ~~~~l~~~Gf~~~~~~~ 248 (274)
+...+.++||.+.-..+
T Consensus 122 m~n~~m~~~~~~kl~e~ 138 (185)
T COG4627 122 MFNGFMDAGFVVKLLEY 138 (185)
T ss_pred HHHHHHhhhheehhhhH
Confidence 56667777776654433
No 279
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=96.89 E-value=0.0019 Score=52.83 Aligned_cols=58 Identities=26% Similarity=0.354 Sum_probs=46.0
Q ss_pred CCCccHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHH
Q 024021 91 IGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEE 148 (274)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~ 148 (274)
...+...+..++.....++..|||.-||+|..+.+..+.|.+.+|+|++++.++.|++
T Consensus 174 ~~kP~~l~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 174 TQKPVELIERLIKASTNPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp T-S-HHHHHHHHHHHS-TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHHH
T ss_pred ecCCHHHHHHHHHhhhccceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhcC
Confidence 3445677888887777888999999999999999999999999999999999998864
No 280
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=96.89 E-value=0.0095 Score=48.50 Aligned_cols=102 Identities=22% Similarity=0.246 Sum_probs=71.7
Q ss_pred CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChH----HHHHHHHHhhcCCCCcceEEEEcccCCCCC----CCC
Q 024021 106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDI----AIKKAEELSSSLPNAKFVSFLKADFFTWCP----TEL 174 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~----~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~----~~~ 174 (274)
..++.+||-+|+++|.....+.. +...|+++|+++. .+..|+++ .|+--+..|+..+.. -..
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR-------tNiiPIiEDArhP~KYRmlVgm 226 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR-------TNIIPIIEDARHPAKYRMLVGM 226 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc-------CCceeeeccCCCchheeeeeee
Confidence 45678999999999998877766 5668999999864 34444444 467777888876422 236
Q ss_pred eeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCC
Q 024021 175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISD 218 (274)
Q Consensus 175 ~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~ 218 (274)
+|+|++.-. ++++...+.-.....|++||-+++......-
T Consensus 227 VDvIFaDva----qpdq~RivaLNA~~FLk~gGhfvisikanci 266 (317)
T KOG1596|consen 227 VDVIFADVA----QPDQARIVALNAQYFLKNGGHFVISIKANCI 266 (317)
T ss_pred EEEEeccCC----CchhhhhhhhhhhhhhccCCeEEEEEecccc
Confidence 788875322 3345556666788899999999987765543
No 281
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=96.87 E-value=0.023 Score=50.01 Aligned_cols=111 Identities=14% Similarity=0.086 Sum_probs=80.3
Q ss_pred CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC---CCCCeeEEE
Q 024021 106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC---PTELFDLIF 179 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~D~v~ 179 (274)
..++.+|||..+..|.=+.+++. .-..|++.|.+...+...+.++...|. .+...+..|..++. ..++||-|+
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv-~ntiv~n~D~~ef~~~~~~~~fDRVL 317 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGV-TNTIVSNYDGREFPEKEFPGSFDRVL 317 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCC-CceEEEccCcccccccccCcccceee
Confidence 45568999999999988877765 445899999999999999999988875 34666666765421 123899999
Q ss_pred ecccccc--c---Ch---------------hHHHHHHHHHHhcccCCcEEEEEEccCC
Q 024021 180 DYTFFCA--I---EP---------------EMRAAWAQKIKDFLKPDGELITLMFPIS 217 (274)
Q Consensus 180 ~~~~~~~--~---~~---------------~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 217 (274)
....-.. + +. ...++++.....++++||+|+..+.+..
T Consensus 318 LDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~ 375 (460)
T KOG1122|consen 318 LDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSIT 375 (460)
T ss_pred ecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecc
Confidence 6433222 0 00 1225788888999999999998776654
No 282
>PRK13699 putative methylase; Provisional
Probab=96.83 E-value=0.0041 Score=51.18 Aligned_cols=60 Identities=22% Similarity=0.297 Sum_probs=52.1
Q ss_pred CccHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhc
Q 024021 93 QPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSS 152 (274)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~ 152 (274)
.|...+..++.....++..|||.-||+|..+.+..+.|.+++|+|++++-.+.+.+++..
T Consensus 148 kP~~l~~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 148 KPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred CcHHHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHH
Confidence 456667777776667889999999999999999999999999999999999999988754
No 283
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=96.75 E-value=0.0042 Score=50.85 Aligned_cols=77 Identities=22% Similarity=0.324 Sum_probs=47.5
Q ss_pred CeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHH---hhcCCC-----CcceEEEEcccCCC--CCCCCeeEEE
Q 024021 110 GRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEEL---SSSLPN-----AKFVSFLKADFFTW--CPTELFDLIF 179 (274)
Q Consensus 110 ~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~---~~~~~~-----~~~~~~~~~d~~~~--~~~~~~D~v~ 179 (274)
.+|||+-+|-|..+..++..|++|+++|-+|-.....+.- ...... ..+++++.+|..+. .+.++||+|+
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVVY 156 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDVVY 156 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SEEE
T ss_pred CEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEEE
Confidence 4899999999999999988899999999999777665532 222211 14799999999884 3357899999
Q ss_pred ecccccc
Q 024021 180 DYTFFCA 186 (274)
Q Consensus 180 ~~~~~~~ 186 (274)
....|.+
T Consensus 157 ~DPMFp~ 163 (234)
T PF04445_consen 157 FDPMFPE 163 (234)
T ss_dssp E--S---
T ss_pred ECCCCCC
Confidence 8887765
No 284
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=96.71 E-value=0.022 Score=47.15 Aligned_cols=102 Identities=17% Similarity=0.048 Sum_probs=65.5
Q ss_pred CCeEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhh-----cCCCCcceEEEEcccCCCC----CCCC-eeE
Q 024021 109 KGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSS-----SLPNAKFVSFLKADFFTWC----PTEL-FDL 177 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~-----~~~~~~~~~~~~~d~~~~~----~~~~-~D~ 177 (274)
..+||++|+|+|..++.++. .++.|+..|... .+...+.+.. .+.....+.....+..... ..+. +|+
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~-~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dl 165 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPK-VVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDL 165 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcceeccCCchh-hHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccE
Confidence 45799999999988887776 677899888843 3333333321 1222234555555554421 1123 899
Q ss_pred EEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021 178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 178 v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 213 (274)
|+++.++..- .....++..++..|..++.+++..
T Consensus 166 ilasDvvy~~--~~~e~Lv~tla~ll~~~~~i~l~~ 199 (248)
T KOG2793|consen 166 ILASDVVYEE--ESFEGLVKTLAFLLAKDGTIFLAY 199 (248)
T ss_pred EEEeeeeecC--CcchhHHHHHHHHHhcCCeEEEEE
Confidence 9999988754 344567788888898899554443
No 285
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=96.69 E-value=0.014 Score=48.51 Aligned_cols=152 Identities=18% Similarity=0.142 Sum_probs=102.3
Q ss_pred HhcCCCCCCeEEEEcCCcchhHHHhhCCCC--eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCC---CCee
Q 024021 102 HQSGALPKGRALVPGCGTGYDVVAMASPER--YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT---ELFD 176 (274)
Q Consensus 102 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~D 176 (274)
....++.++.|+-+| -.-..+++++-.+. +|..+|++...++...+..+..+. +++..+.-|+.++.|. ++||
T Consensus 146 ~~RGDL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~-~~ie~~~~Dlr~plpe~~~~kFD 223 (354)
T COG1568 146 YSRGDLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGY-NNIEAFVFDLRNPLPEDLKRKFD 223 (354)
T ss_pred ccccCcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCc-cchhheeehhcccChHHHHhhCC
Confidence 344577788999998 55555666665444 899999999999999998888775 4699999999997764 5899
Q ss_pred EEEecccccccChhHHHHHHHHHHhcccCC---cEEEEEEccCCCCCCCCCcccCHHHHHH-HHhcCCCcEEEEeecccc
Q 024021 177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPD---GELITLMFPISDHVGGPPYKVSVSDYEE-VLQPMGFQAISIVDNKLA 252 (274)
Q Consensus 177 ~v~~~~~~~~~~~~~~~~~l~~~~~~L~pg---G~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~Gf~~~~~~~~~~~ 252 (274)
+++...+-- + +....++.+=...|+.- |++.+...... .....++++ +..+.||.+.++...--.
T Consensus 224 vfiTDPpeT-i--~alk~FlgRGI~tLkg~~~aGyfgiT~ress--------idkW~eiQr~lIn~~gvVITdiirnFN~ 292 (354)
T COG1568 224 VFITDPPET-I--KALKLFLGRGIATLKGEGCAGYFGITRRESS--------IDKWREIQRILINEMGVVITDIIRNFNE 292 (354)
T ss_pred eeecCchhh-H--HHHHHHHhccHHHhcCCCccceEeeeecccc--------HHHHHHHHHHHHHhcCeeeHhhhhhhhc
Confidence 998643321 1 23456666666667655 66666542211 113456666 777889988887765555
Q ss_pred cCCccchhHHHHhh
Q 024021 253 IGPRKGREKLGRWK 266 (274)
Q Consensus 253 ~~~~~~~~~~~~~~ 266 (274)
+.++...+.=..|+
T Consensus 293 Y~nwey~~et~a~~ 306 (354)
T COG1568 293 YVNWEYIEETRAWK 306 (354)
T ss_pred ccccccchhhhhhh
Confidence 55554433333443
No 286
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=96.67 E-value=0.0084 Score=51.26 Aligned_cols=73 Identities=19% Similarity=0.236 Sum_probs=54.4
Q ss_pred CCCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC------C-CCCCee
Q 024021 106 ALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW------C-PTELFD 176 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~------~-~~~~~D 176 (274)
..++...+|.-.|.|+.+..+++ ++.+++|+|.++.+++.|++++... .+++.++.+++.+. . ...++|
T Consensus 18 ~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~l~~~l~~~~~~~~~d 95 (310)
T PF01795_consen 18 PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSNLDEYLKELNGINKVD 95 (310)
T ss_dssp --TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGGHHHHHHHTTTTS-EE
T ss_pred cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHHHHHHHHHccCCCccC
Confidence 45668999999999999998886 5689999999999999999888755 37899999998771 2 335789
Q ss_pred EEEe
Q 024021 177 LIFD 180 (274)
Q Consensus 177 ~v~~ 180 (274)
.|+.
T Consensus 96 giL~ 99 (310)
T PF01795_consen 96 GILF 99 (310)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8886
No 287
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.67 E-value=0.0085 Score=48.51 Aligned_cols=79 Identities=16% Similarity=0.086 Sum_probs=55.9
Q ss_pred CCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcC-CCCcceEEEEcccCC-C-----CCCCCeeEEE
Q 024021 109 KGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSL-PNAKFVSFLKADFFT-W-----CPTELFDLIF 179 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~~~~~~~d~~~-~-----~~~~~~D~v~ 179 (274)
..++||||.|.-+.--.+-. -|++.+|.|+++.+++.|+..+..+ ++...+++..-.-.. . ...+.||+++
T Consensus 79 ~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~tl 158 (292)
T COG3129 79 NIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDATL 158 (292)
T ss_pred ceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeeeEe
Confidence 35899998877655433322 5789999999999999999998776 444445554432222 1 1246899999
Q ss_pred eccccccc
Q 024021 180 DYTFFCAI 187 (274)
Q Consensus 180 ~~~~~~~~ 187 (274)
|+..|+.-
T Consensus 159 CNPPFh~s 166 (292)
T COG3129 159 CNPPFHDS 166 (292)
T ss_pred cCCCcchh
Confidence 99998864
No 288
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=96.64 E-value=0.0088 Score=50.19 Aligned_cols=106 Identities=22% Similarity=0.187 Sum_probs=78.8
Q ss_pred CCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcC--CC-CcceEEEEcccCC---CCCCCCeeEEE
Q 024021 108 PKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSL--PN-AKFVSFLKADFFT---WCPTELFDLIF 179 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~--~~-~~~~~~~~~d~~~---~~~~~~~D~v~ 179 (274)
.++++|-||.|.|......++. --.+..+|++...++..++-.+.. +. .+++.+..||-+. ....++||+|+
T Consensus 121 npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVii 200 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVII 200 (337)
T ss_pred CCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEEE
Confidence 4589999999999999877763 238999999999999998876542 11 3679999998876 34467899999
Q ss_pred ecc--cccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021 180 DYT--FFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 180 ~~~--~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 213 (274)
.-. .....-.-....+...+.+.||+||+++...
T Consensus 201 ~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 201 TDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred EecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 632 2211111234678899999999999988754
No 289
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.63 E-value=0.0034 Score=50.62 Aligned_cols=95 Identities=16% Similarity=0.133 Sum_probs=66.4
Q ss_pred CeEEEEcCCcchhHHHhhC--------CCC---eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC---------
Q 024021 110 GRALVPGCGTGYDVVAMAS--------PER---YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--------- 169 (274)
Q Consensus 110 ~~vLDiG~G~G~~~~~l~~--------~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--------- 169 (274)
.+++|+.+..|.|+..+.+ .+. .+++||+.+- .+- +.|.-+++|+++.
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M--------aPI----~GV~qlq~DIT~~stae~Ii~h 110 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM--------API----EGVIQLQGDITSASTAEAIIEH 110 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC--------Ccc----CceEEeecccCCHhHHHHHHHH
Confidence 6899999999999988865 122 3999999652 122 3477889999872
Q ss_pred CCCCCeeEEEecccc-----cccCh----hHHHHHHHHHHhcccCCcEEEEEEccC
Q 024021 170 CPTELFDLIFDYTFF-----CAIEP----EMRAAWAQKIKDFLKPDGELITLMFPI 216 (274)
Q Consensus 170 ~~~~~~D~v~~~~~~-----~~~~~----~~~~~~l~~~~~~L~pgG~~~~~~~~~ 216 (274)
+..++.|+|+|.+.- |.++. +.+...+.-...+|+|||.|+.-.|..
T Consensus 111 fggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg 166 (294)
T KOG1099|consen 111 FGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRG 166 (294)
T ss_pred hCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhcc
Confidence 234589999998763 33332 223455666778999999999755443
No 290
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=96.54 E-value=0.014 Score=50.86 Aligned_cols=122 Identities=11% Similarity=0.021 Sum_probs=83.7
Q ss_pred CeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCC---C-CeeEEEecccc
Q 024021 110 GRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT---E-LFDLIFDYTFF 184 (274)
Q Consensus 110 ~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~---~-~~D~v~~~~~~ 184 (274)
.+++|+-||.|.+..-+...|. .+.++|+++.+++.-+.+.+. ..+...|+...... . .+|+++.....
T Consensus 4 ~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~~~~~~DvligGpPC 77 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEALRKSDVDVLIGGPPC 77 (328)
T ss_pred ceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhccccCCCEEEeCCCC
Confidence 5899999999999999988887 678899999999988888742 44566676652221 1 78999987665
Q ss_pred cccCh--------hH---HHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCc
Q 024021 185 CAIEP--------EM---RAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQ 242 (274)
Q Consensus 185 ~~~~~--------~~---~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 242 (274)
+.++. +. +-.-+.++...++| .+++.+....-... ..-..+++.+.|++.||.
T Consensus 78 Q~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P--~~fv~ENV~gl~~~---~~~~~~~i~~~L~~~GY~ 141 (328)
T COG0270 78 QDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP--KFFVLENVKGLLSS---KGQTFDEIKKELEELGYG 141 (328)
T ss_pred cchhhcCcccCCcCccceeeHHHHHHHHhhCC--CEEEEecCchHHhc---CchHHHHHHHHHHHcCCc
Confidence 55421 11 12334566666788 55555543321111 122678999999999997
No 291
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=96.45 E-value=0.07 Score=38.62 Aligned_cols=101 Identities=18% Similarity=0.140 Sum_probs=68.1
Q ss_pred CCcchhHHHhhC----CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-----CCCCCeeEEEeccccccc
Q 024021 117 CGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-----CPTELFDLIFDYTFFCAI 187 (274)
Q Consensus 117 ~G~G~~~~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~D~v~~~~~~~~~ 187 (274)
||.|..+..+++ .+..++.+|.+++.++.++... +.++.+|..+. ..-+++|.+++..
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~--------~~~i~gd~~~~~~l~~a~i~~a~~vv~~~----- 70 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEG--------VEVIYGDATDPEVLERAGIEKADAVVILT----- 70 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT--------SEEEES-TTSHHHHHHTTGGCESEEEEES-----
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc--------cccccccchhhhHHhhcCccccCEEEEcc-----
Confidence 566777776665 4558999999999988887653 67899999872 2235688777432
Q ss_pred ChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEE
Q 024021 188 EPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAI 244 (274)
Q Consensus 188 ~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~ 244 (274)
+++.....+....+.+.|...+++.. ...+..+.|+..|...+
T Consensus 71 ~~d~~n~~~~~~~r~~~~~~~ii~~~--------------~~~~~~~~l~~~g~d~v 113 (116)
T PF02254_consen 71 DDDEENLLIALLARELNPDIRIIARV--------------NDPENAELLRQAGADHV 113 (116)
T ss_dssp SSHHHHHHHHHHHHHHTTTSEEEEEE--------------SSHHHHHHHHHTT-SEE
T ss_pred CCHHHHHHHHHHHHHHCCCCeEEEEE--------------CCHHHHHHHHHCCcCEE
Confidence 23344445556667778888888766 45566778888887654
No 292
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=96.32 E-value=0.098 Score=42.99 Aligned_cols=105 Identities=12% Similarity=0.093 Sum_probs=74.5
Q ss_pred CCeEEEEcCCcchhHHHhhC----CC--CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---CCCCCCee-EE
Q 024021 109 KGRALVPGCGTGYDVVAMAS----PE--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPTELFD-LI 178 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l~~----~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~D-~v 178 (274)
+...+|+|+|+..-+..+.. .+ .+++.+|++...+....+.+......-.+.-+.+|+.. ..+..+-- ++
T Consensus 79 ~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl~~ 158 (321)
T COG4301 79 ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRLFV 158 (321)
T ss_pred cceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEEEE
Confidence 57999999999877765544 34 48999999998876655544333222346677788765 23322223 33
Q ss_pred EecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021 179 FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 179 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 213 (274)
+....+..+.++....++.++...+.||-.+++..
T Consensus 159 flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGv 193 (321)
T COG4301 159 FLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGV 193 (321)
T ss_pred EecccccCCChHHHHHHHHHHHhcCCCcceEEEec
Confidence 44467888888888999999999999999988844
No 293
>PRK13699 putative methylase; Provisional
Probab=96.21 E-value=0.03 Score=46.04 Aligned_cols=81 Identities=15% Similarity=0.204 Sum_probs=55.6
Q ss_pred eEEEEcccCC---CCCCCCeeEEEecccccc---------cC----hhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCC
Q 024021 159 VSFLKADFFT---WCPTELFDLIFDYTFFCA---------IE----PEMRAAWAQKIKDFLKPDGELITLMFPISDHVGG 222 (274)
Q Consensus 159 ~~~~~~d~~~---~~~~~~~D~v~~~~~~~~---------~~----~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~ 222 (274)
++++.+|..+ ..+++++|+|+....+.. +. .+-...++.++.++|||||.+++.....
T Consensus 2 ~~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~------ 75 (227)
T PRK13699 2 SRFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWN------ 75 (227)
T ss_pred CeEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEeccc------
Confidence 3567788765 577889999999877641 00 0223578899999999999887643100
Q ss_pred CCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024021 223 PPYKVSVSDYEEVLQPMGFQAISIVDNK 250 (274)
Q Consensus 223 ~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 250 (274)
....+...++++||.+....-+.
T Consensus 76 -----~~~~~~~al~~~GF~l~~~IiW~ 98 (227)
T PRK13699 76 -----RVDRFMAAWKNAGFSVVGHLVFT 98 (227)
T ss_pred -----cHHHHHHHHHHCCCEEeeEEEEE
Confidence 24567778899999987654443
No 294
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.21 E-value=0.031 Score=48.41 Aligned_cols=94 Identities=22% Similarity=0.229 Sum_probs=65.0
Q ss_pred CCCCCeEEEEcCC-cchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc---ccCCCCCCCCeeEEEe
Q 024021 106 ALPKGRALVPGCG-TGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA---DFFTWCPTELFDLIFD 180 (274)
Q Consensus 106 ~~~~~~vLDiG~G-~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~---d~~~~~~~~~~D~v~~ 180 (274)
..++.+|+=+|+| .|..+.++++ .|++|+++|.+++-.+.|++.-.. .++.. |..+.. .+.||+|+.
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd-------~~i~~~~~~~~~~~-~~~~d~ii~ 235 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGAD-------HVINSSDSDALEAV-KEIADAIID 235 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCc-------EEEEcCCchhhHHh-HhhCcEEEE
Confidence 3466788887777 4456677777 789999999999999999887532 23332 222211 123999995
Q ss_pred cccccccChhHHHHHHHHHHhcccCCcEEEEEEccC
Q 024021 181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (274)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 216 (274)
.-. . ..+....+.|++||.++++-...
T Consensus 236 tv~-~--------~~~~~~l~~l~~~G~~v~vG~~~ 262 (339)
T COG1064 236 TVG-P--------ATLEPSLKALRRGGTLVLVGLPG 262 (339)
T ss_pred CCC-h--------hhHHHHHHHHhcCCEEEEECCCC
Confidence 433 2 34577888999999999987664
No 295
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=96.14 E-value=0.005 Score=45.48 Aligned_cols=77 Identities=23% Similarity=0.267 Sum_probs=50.7
Q ss_pred ceEEEEcccCCCC--CCCCeeEEEecccccccChhH-HHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHH
Q 024021 158 FVSFLKADFFTWC--PTELFDLIFDYTFFCAIEPEM-RAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEE 234 (274)
Q Consensus 158 ~~~~~~~d~~~~~--~~~~~D~v~~~~~~~~~~~~~-~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (274)
.+++..+|+.+.. ....||+|+..+.-..-.++. ...++..+.++++|||.+...+ ....+++
T Consensus 32 ~L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys--------------~a~~Vr~ 97 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQLDARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLATYS--------------SAGAVRR 97 (124)
T ss_dssp EEEEEES-HHHHHHHB-T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEES----------------BHHHHH
T ss_pred EEEEEEcHHHHHHHhCcccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEEee--------------chHHHHH
Confidence 4677778886621 236899999765432222222 1578999999999999887754 4578999
Q ss_pred HHhcCCCcEEEEee
Q 024021 235 VLQPMGFQAISIVD 248 (274)
Q Consensus 235 ~l~~~Gf~~~~~~~ 248 (274)
.|.++||.+.+..-
T Consensus 98 ~L~~aGF~v~~~~g 111 (124)
T PF05430_consen 98 ALQQAGFEVEKVPG 111 (124)
T ss_dssp HHHHCTEEEEEEE-
T ss_pred HHHHcCCEEEEcCC
Confidence 99999999876654
No 296
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=96.10 E-value=0.037 Score=46.31 Aligned_cols=43 Identities=21% Similarity=0.090 Sum_probs=34.5
Q ss_pred CeEEEEcCCcchhHHHhhC----------CCCeEEEEeCChHHHHHHHHHhhc
Q 024021 110 GRALVPGCGTGYDVVAMAS----------PERYVVGLEISDIAIKKAEELSSS 152 (274)
Q Consensus 110 ~~vLDiG~G~G~~~~~l~~----------~~~~v~~vD~~~~~~~~a~~~~~~ 152 (274)
.+|+|+|+|+|.++..+++ ...+++.+|.||.+.+.-++++..
T Consensus 20 ~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 20 LRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred cEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 6999999999999877765 125899999999999888888765
No 297
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=96.01 E-value=0.014 Score=50.04 Aligned_cols=111 Identities=21% Similarity=0.179 Sum_probs=79.2
Q ss_pred CCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHH-------HHHHhhcCCCC-cceEEEEcccCCCC--CCCCe
Q 024021 106 ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKK-------AEELSSSLPNA-KFVSFLKADFFTWC--PTELF 175 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~-------a~~~~~~~~~~-~~~~~~~~d~~~~~--~~~~~ 175 (274)
..++..|+|.-.|||.++...++-|+.|.|.|++-.++.. .+.+++..+.+ --+..+.+|+.+.. ....|
T Consensus 206 v~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~~f 285 (421)
T KOG2671|consen 206 VKPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNLKF 285 (421)
T ss_pred cCCCCEEecCccccCceeeehhhhcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhccee
Confidence 4567899999999999999999999999999999877762 23444444422 23567888887732 23479
Q ss_pred eEEEeccccccc------------------------Ch-------hHHHHHHHHHHhcccCCcEEEEEEccC
Q 024021 176 DLIFDYTFFCAI------------------------EP-------EMRAAWAQKIKDFLKPDGELITLMFPI 216 (274)
Q Consensus 176 D~v~~~~~~~~~------------------------~~-------~~~~~~l~~~~~~L~pgG~~~~~~~~~ 216 (274)
|.|+|...++-- |. ......+.-.++.|..||+++......
T Consensus 286 DaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p~~ 357 (421)
T KOG2671|consen 286 DAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLPTI 357 (421)
T ss_pred eEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecCch
Confidence 999997665321 10 112466777889999999988866543
No 298
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=96.00 E-value=0.0058 Score=43.34 Aligned_cols=46 Identities=20% Similarity=0.179 Sum_probs=34.6
Q ss_pred cHHHHHHHhcCCC--CCCeEEEEcCCcchhHHHhhCCCCeEEEEeCCh
Q 024021 95 APIIVHLHQSGAL--PKGRALVPGCGTGYDVVAMASPERYVVGLEISD 140 (274)
Q Consensus 95 ~~~~~~~~~~~~~--~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~ 140 (274)
++.+..+....-. +...-+|+|||.|.+.-.|...|..-+|+|.-.
T Consensus 43 AAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~R~ 90 (112)
T PF07757_consen 43 AAYLIELWRDMYGEQKFQGFVDLGCGNGLLVYILNSEGYPGWGIDARR 90 (112)
T ss_pred HHHHHHHHhcccCCCCCCceEEccCCchHHHHHHHhCCCCcccccccc
Confidence 4444454444322 346899999999999999999999999999854
No 299
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=95.92 E-value=0.17 Score=39.93 Aligned_cols=133 Identities=14% Similarity=0.090 Sum_probs=84.5
Q ss_pred HHHHHhcCCCCCCeEEEEcCCcchhHHHhhC----CC--CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC
Q 024021 98 IVHLHQSGALPKGRALVPGCGTGYDVVAMAS----PE--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP 171 (274)
Q Consensus 98 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~----~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 171 (274)
++.++. ..++..|+|.|.-.|..+.+.+. -| .+|.++|++-...+.+.... +++.|+.++-.++.-
T Consensus 61 yQellw--~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~------p~i~f~egss~dpai 132 (237)
T COG3510 61 YQELLW--ELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREV------PDILFIEGSSTDPAI 132 (237)
T ss_pred HHHHHH--hcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcC------CCeEEEeCCCCCHHH
Confidence 444554 45678999999999999988876 34 79999999866555544332 679999999876321
Q ss_pred -------CCCe-eEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCC-CCcc---cCHHHHHHHHhcC
Q 024021 172 -------TELF-DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGG-PPYK---VSVSDYEEVLQPM 239 (274)
Q Consensus 172 -------~~~~-D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~l~~~ 239 (274)
.+.+ -+.++...-|+. +..-..++.+..+|..|-++++.+-...+.... .++. -..+-+.+.++++
T Consensus 133 ~eqi~~~~~~y~kIfvilDsdHs~--~hvLAel~~~~pllsaG~Y~vVeDs~v~dlp~~~~p~~~g~gP~~AVe~ylr~~ 210 (237)
T COG3510 133 AEQIRRLKNEYPKIFVILDSDHSM--EHVLAELKLLAPLLSAGDYLVVEDSNVNDLPGPVLPWRFGGGPYEAVEAYLREF 210 (237)
T ss_pred HHHHHHHhcCCCcEEEEecCCchH--HHHHHHHHHhhhHhhcCceEEEecccccCCCCcccchhcCCChHHHHHHHHHhC
Confidence 1222 333333333333 334466788889999999999877555444311 1111 1345666667766
Q ss_pred C
Q 024021 240 G 240 (274)
Q Consensus 240 G 240 (274)
+
T Consensus 211 p 211 (237)
T COG3510 211 P 211 (237)
T ss_pred C
Confidence 5
No 300
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=95.88 E-value=0.016 Score=48.79 Aligned_cols=100 Identities=13% Similarity=0.098 Sum_probs=74.0
Q ss_pred CCCeEEEEcCCcchhHH-HhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccc
Q 024021 108 PKGRALVPGCGTGYDVV-AMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC 185 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~-~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~ 185 (274)
.+..|+|+=+|.|+++. .+...|+ .|+++|.+|.+++..+++++.++...+..+..+|-+.+-+....|-|....
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~~~~AdrVnLGL--- 270 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKPRLRADRVNLGL--- 270 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCccccchheeecc---
Confidence 34689999999999998 7777777 899999999999999999998888788888889988877777788777432
Q ss_pred ccChhHHHHHHHHHHhcccCCcE-EEEEE
Q 024021 186 AIEPEMRAAWAQKIKDFLKPDGE-LITLM 213 (274)
Q Consensus 186 ~~~~~~~~~~l~~~~~~L~pgG~-~~~~~ 213 (274)
+|. ....+ ....++|+|.|- ++-+.
T Consensus 271 -lPS-se~~W-~~A~k~Lk~eggsilHIH 296 (351)
T KOG1227|consen 271 -LPS-SEQGW-PTAIKALKPEGGSILHIH 296 (351)
T ss_pred -ccc-cccch-HHHHHHhhhcCCcEEEEe
Confidence 221 11122 234556666544 55443
No 301
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=95.81 E-value=0.017 Score=44.22 Aligned_cols=130 Identities=19% Similarity=0.153 Sum_probs=72.8
Q ss_pred CCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcce-EEEEcccCC--CCCCCCeeEEEecccc
Q 024021 109 KGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFV-SFLKADFFT--WCPTELFDLIFDYTFF 184 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~~d~~~--~~~~~~~D~v~~~~~~ 184 (274)
+++++-+|+..--.-......|+ ++..+|.++--++.- ..+++ .+...|+.+ ..-.++||.+.+..++
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~--------~~dr~ssi~p~df~~~~~~y~~~fD~~as~~si 73 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEE--------FRDRLSSILPVDFAKNWQKYAGSFDFAASFSSI 73 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCcc--------cccccccccHHHHHHHHHHhhccchhhheechh
Confidence 35667777764322222223444 789999865211110 01121 222334433 1234679999999988
Q ss_pred ccc---------ChhHHHHHHHHHHhcccCCcEEEEEEccCCCCC-CCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024021 185 CAI---------EPEMRAAWAQKIKDFLKPDGELITLMFPISDHV-GGPPYKVSVSDYEEVLQPMGFQAISIVD 248 (274)
Q Consensus 185 ~~~---------~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 248 (274)
+|. ++.-....+.++..+||+||.+++...-..+.. .+....+.+..+.-++. ||+.+..-.
T Consensus 74 Eh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d~i~fNahRiYg~~rL~mm~~--gfe~i~tfs 145 (177)
T PF03269_consen 74 EHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTDAIQFNAHRIYGPIRLAMMFY--GFEWIDTFS 145 (177)
T ss_pred ccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCcceEEecceeecHhHHHHHhC--CcEEEeeec
Confidence 775 111124567899999999999999776554331 12222345556554544 788887633
No 302
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.61 E-value=0.0077 Score=53.95 Aligned_cols=103 Identities=16% Similarity=0.100 Sum_probs=78.9
Q ss_pred CCCeEEEEcCCcchhHHHhhC--CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-----CCCCCCeeEEE
Q 024021 108 PKGRALVPGCGTGYDVVAMAS--PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-----WCPTELFDLIF 179 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~--~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-----~~~~~~~D~v~ 179 (274)
++.+|||.-|++|.-++..++ +|. +|++-|.++.+++..++++..++..+.+.--..|+.. ......||+|=
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvID 188 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVID 188 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceEe
Confidence 457999999999999887766 444 8999999999999999999888766667777777765 22346799887
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCcEEEEEEccC
Q 024021 180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (274)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 216 (274)
... ++ ....+|+...+.++.||+++++.-.+
T Consensus 189 LDP-yG-----s~s~FLDsAvqav~~gGLL~vT~TD~ 219 (525)
T KOG1253|consen 189 LDP-YG-----SPSPFLDSAVQAVRDGGLLCVTCTDM 219 (525)
T ss_pred cCC-CC-----CccHHHHHHHHHhhcCCEEEEEecch
Confidence 322 22 22467888999999999999976443
No 303
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.59 E-value=0.064 Score=46.62 Aligned_cols=99 Identities=19% Similarity=0.078 Sum_probs=73.0
Q ss_pred CCeEEEEcCCcchhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCC--CCeeEEEecccc
Q 024021 109 KGRALVPGCGTGYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT--ELFDLIFDYTFF 184 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l~~-~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~D~v~~~~~~ 184 (274)
+.+|+|.-+|+|.=++.++. .+. +++.-|++|.+++.+++|+..+.. .+...+..|....... ..||+|=. .+|
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~-~~~~v~n~DAN~lm~~~~~~fd~IDi-DPF 130 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSG-EDAEVINKDANALLHELHRAFDVIDI-DPF 130 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCc-ccceeecchHHHHHHhcCCCccEEec-CCC
Confidence 67999999999998876665 455 899999999999999999988732 3455555776654333 56887653 222
Q ss_pred cccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021 185 CAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (274)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 214 (274)
.. ...+++...+.++.||++.++.-
T Consensus 131 GS-----PaPFlDaA~~s~~~~G~l~vTAT 155 (380)
T COG1867 131 GS-----PAPFLDAALRSVRRGGLLCVTAT 155 (380)
T ss_pred CC-----CchHHHHHHHHhhcCCEEEEEec
Confidence 21 13577888888999999988653
No 304
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=95.53 E-value=0.072 Score=46.08 Aligned_cols=124 Identities=15% Similarity=0.062 Sum_probs=77.7
Q ss_pred eEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC----CCCCCeeEEEeccccc
Q 024021 111 RALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW----CPTELFDLIFDYTFFC 185 (274)
Q Consensus 111 ~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~D~v~~~~~~~ 185 (274)
+++|+-||.|.+..-+...|. .+.++|+++.+.+.-+.+.+ ....+|+.+. .+. .+|+++....-.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l~~-~~D~l~ggpPCQ 72 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDLPK-DVDLLIGGPPCQ 72 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHHHH-T-SEEEEE---T
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc--------ccccccccccccccccc-cceEEEeccCCc
Confidence 689999999999999998887 78899999999999998883 6788888873 222 599999875544
Q ss_pred ccCh--------h----HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024021 186 AIEP--------E----MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD 248 (274)
Q Consensus 186 ~~~~--------~----~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 248 (274)
.++. + ....++ ++.+.++|. +++.+....-... ........+.+.|++.||.+....-
T Consensus 73 ~fS~ag~~~~~~d~r~~L~~~~~-~~v~~~~Pk--~~~~ENV~~l~~~--~~~~~~~~i~~~l~~lGY~v~~~vl 142 (335)
T PF00145_consen 73 GFSIAGKRKGFDDPRNSLFFEFL-RIVKELKPK--YFLLENVPGLLSS--KNGEVFKEILEELEELGYNVQWRVL 142 (335)
T ss_dssp TTSTTSTHHCCCCHTTSHHHHHH-HHHHHHS-S--EEEEEEEGGGGTG--GGHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred eEeccccccccccccchhhHHHH-HHHhhccce--EEEecccceeecc--ccccccccccccccccceeehhccc
Confidence 3321 1 123333 334456774 3343422211100 0001357888999999998765433
No 305
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.43 E-value=0.092 Score=45.49 Aligned_cols=124 Identities=16% Similarity=0.050 Sum_probs=75.8
Q ss_pred EEEEcCCcchhHHHhhCCCCe-EEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC--CCCeeEEEecccccccC
Q 024021 112 ALVPGCGTGYDVVAMASPERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--TELFDLIFDYTFFCAIE 188 (274)
Q Consensus 112 vLDiG~G~G~~~~~l~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~D~v~~~~~~~~~~ 188 (274)
|+|+-||.|.+..-+...|.+ +.++|+++.+++..+.+.+. .+..+|+.+..+ -..+|+++.......++
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~~-------~~~~~Di~~~~~~~~~~~dvl~gg~PCq~fS 73 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFGN-------KVPFGDITKISPSDIPDFDILLGGFPCQPFS 73 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCCC-------CCCccChhhhhhhhCCCcCEEEecCCCcccc
Confidence 589999999999999888886 56799999999988888743 334567766321 23589998765543332
Q ss_pred h--------hHHHHHHH---HHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEE
Q 024021 189 P--------EMRAAWAQ---KIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISI 246 (274)
Q Consensus 189 ~--------~~~~~~l~---~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 246 (274)
. +.+..++. ++.+.++|. +++.+....-... ...-....+...|+..||.+...
T Consensus 74 ~ag~~~~~~d~r~~L~~~~~r~i~~~~P~--~~v~ENV~~l~~~--~~~~~~~~i~~~l~~~GY~v~~~ 138 (315)
T TIGR00675 74 IAGKRKGFEDTRGTLFFEIVRILKEKKPK--FFLLENVKGLVSH--DKGRTFKVIIETLEELGYKVYYK 138 (315)
T ss_pred hhcccCCCCCchhhHHHHHHHHHhhcCCC--EEEeeccHHHHhc--ccchHHHHHHHHHHhCCCEEEEE
Confidence 1 11222222 333445664 4554433211100 00113577888899999987543
No 306
>PTZ00357 methyltransferase; Provisional
Probab=95.29 E-value=0.067 Score=50.18 Aligned_cols=96 Identities=17% Similarity=0.110 Sum_probs=61.9
Q ss_pred eEEEEcCCcchhHHHhhC----C--CCeEEEEeCChHHHHHHHHHh-hcCCC-------CcceEEEEcccCCCCCC----
Q 024021 111 RALVPGCGTGYDVVAMAS----P--ERYVVGLEISDIAIKKAEELS-SSLPN-------AKFVSFLKADFFTWCPT---- 172 (274)
Q Consensus 111 ~vLDiG~G~G~~~~~l~~----~--~~~v~~vD~~~~~~~~a~~~~-~~~~~-------~~~~~~~~~d~~~~~~~---- 172 (274)
.|+-+|+|-|-+.....+ . ..+|++||-++.++.....+. ....+ .++|+++..|+..+..+
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 689999999988654433 2 348999999977554444432 11112 35699999999985322
Q ss_pred --------CCeeEEEe--cccccccChhHHHHHHHHHHhcccC----CcE
Q 024021 173 --------ELFDLIFD--YTFFCAIEPEMRAAWAQKIKDFLKP----DGE 208 (274)
Q Consensus 173 --------~~~D~v~~--~~~~~~~~~~~~~~~l~~~~~~L~p----gG~ 208 (274)
+++|+||+ .+.|+. .+..++.|+.+.+.||+ +|+
T Consensus 783 s~~~P~~~gKaDIVVSELLGSFGD--NELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSELLGSLGD--NELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccceehHhhhccccc--ccCCHHHHHHHHHhhhhhcccccc
Confidence 26999997 344443 23334556666666665 665
No 307
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=95.20 E-value=0.56 Score=36.36 Aligned_cols=106 Identities=21% Similarity=0.194 Sum_probs=70.2
Q ss_pred cHHHHHHHhcCCCCCCeEEEEcCCcchhHHHh-hCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC--C-
Q 024021 95 APIIVHLHQSGALPKGRALVPGCGTGYDVVAM-ASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--C- 170 (274)
Q Consensus 95 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l-~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~- 170 (274)
...+.+.+........+|+-|||=+-.....- ...+.+++..|++...-. .+ ++ .|+--|..++ .
T Consensus 12 ~~~l~~~l~~~~~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~--------~~--~~-~F~fyD~~~p~~~~ 80 (162)
T PF10237_consen 12 AEFLARELLDGALDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQ--------FG--GD-EFVFYDYNEPEELP 80 (162)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHh--------cC--Cc-ceEECCCCChhhhh
Confidence 34444444433345579999998775555444 225679999999875322 11 22 4566666552 1
Q ss_pred --CCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021 171 --PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 171 --~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 213 (274)
..++||+|++...+ +..+........+..++++++.+++.+
T Consensus 81 ~~l~~~~d~vv~DPPF--l~~ec~~k~a~ti~~L~k~~~kii~~T 123 (162)
T PF10237_consen 81 EELKGKFDVVVIDPPF--LSEECLTKTAETIRLLLKPGGKIILCT 123 (162)
T ss_pred hhcCCCceEEEECCCC--CCHHHHHHHHHHHHHHhCccceEEEec
Confidence 14689999999888 666777777788888889988888764
No 308
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=95.12 E-value=0.28 Score=38.22 Aligned_cols=82 Identities=20% Similarity=0.198 Sum_probs=57.4
Q ss_pred EEcccCCC-----CCCCCeeEEEecccccc-----------cChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCc
Q 024021 162 LKADFFTW-----CPTELFDLIFDYTFFCA-----------IEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPY 225 (274)
Q Consensus 162 ~~~d~~~~-----~~~~~~D~v~~~~~~~~-----------~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~ 225 (274)
...|+.+. .....||.|+.+++... .....+..++..+..+|+++|.+.+...... +
T Consensus 58 ~~VDat~l~~~~~~~~~~FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~------p- 130 (166)
T PF10354_consen 58 HGVDATKLHKHFRLKNQRFDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQ------P- 130 (166)
T ss_pred cCCCCCcccccccccCCcCCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC------C-
Confidence 44466652 23568999998766443 1123457888999999999999998774332 2
Q ss_pred ccCHHHHHHHHhcCCCcEEEEeeccc
Q 024021 226 KVSVSDYEEVLQPMGFQAISIVDNKL 251 (274)
Q Consensus 226 ~~~~~~~~~~l~~~Gf~~~~~~~~~~ 251 (274)
++.-.+.++.+.+||..++......
T Consensus 131 -y~~W~i~~lA~~~gl~l~~~~~F~~ 155 (166)
T PF10354_consen 131 -YDSWNIEELAAEAGLVLVRKVPFDP 155 (166)
T ss_pred -CccccHHHHHHhcCCEEEEEecCCH
Confidence 2456778999999999988876553
No 309
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=94.84 E-value=0.066 Score=47.46 Aligned_cols=60 Identities=13% Similarity=0.088 Sum_probs=53.6
Q ss_pred cceEEEEcccCC---CCCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccC
Q 024021 157 KFVSFLKADFFT---WCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (274)
Q Consensus 157 ~~~~~~~~d~~~---~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 216 (274)
+++++..+++.+ ..+++++|.++.+....+++++...+.++.+.+.++|||+++.-....
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~ 337 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAV 337 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCC
Confidence 789999999987 346789999999999999999999999999999999999999876554
No 310
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=94.81 E-value=0.0097 Score=49.77 Aligned_cols=106 Identities=17% Similarity=0.174 Sum_probs=62.6
Q ss_pred CCCCCeEEEEcCCcchhHHHhhCCC-CeEEEEeCChHHHHHHH-HHhhcCC-----CCcc---eEEEEc---ccCCCCCC
Q 024021 106 ALPKGRALVPGCGTGYDVVAMASPE-RYVVGLEISDIAIKKAE-ELSSSLP-----NAKF---VSFLKA---DFFTWCPT 172 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~~a~-~~~~~~~-----~~~~---~~~~~~---d~~~~~~~ 172 (274)
...+++|||+|||+|...+.....+ ..+...|++.+.+..-. .+..... ..+. ..+... |. .....
T Consensus 114 ~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg-~~~~t 192 (282)
T KOG2920|consen 114 SFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDG-VFNHT 192 (282)
T ss_pred EecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccc-hhhhc
Confidence 4567899999999999998887766 58888888877762110 0000000 0001 111222 21 11122
Q ss_pred C--CeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021 173 E--LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 173 ~--~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 213 (274)
+ .||+|.++-.+...+. ....+......+++++|+++++.
T Consensus 193 ~~~~ydlIlsSetiy~~~~-~~~~~~~~r~~l~~~D~~~~~aA 234 (282)
T KOG2920|consen 193 ERTHYDLILSSETIYSIDS-LAVLYLLHRPCLLKTDGVFYVAA 234 (282)
T ss_pred cccchhhhhhhhhhhCcch-hhhhHhhhhhhcCCccchhhhhh
Confidence 3 7999998888775532 22222556667788899887755
No 311
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.80 E-value=0.49 Score=40.58 Aligned_cols=136 Identities=15% Similarity=0.111 Sum_probs=94.8
Q ss_pred CCeEEEEcCCcchhHHHhhC--C-CCeEEEEeCChHHHHHHHHHhhcCCC--CcceEEEEcccCC-----CCC-----CC
Q 024021 109 KGRALVPGCGTGYDVVAMAS--P-ERYVVGLEISDIAIKKAEELSSSLPN--AKFVSFLKADFFT-----WCP-----TE 173 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l~~--~-~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~~~d~~~-----~~~-----~~ 173 (274)
...|+-+|||- .+....- + +.+|+-+|. |+.++.=++.+++.+. ..+++++..|+.+ ... .+
T Consensus 93 ~~qvViLgaGL--DTRayRl~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~ 169 (297)
T COG3315 93 IRQVVILGAGL--DTRAYRLDWPKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRS 169 (297)
T ss_pred ccEEEEecccc--ccceeecCCCCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcC
Confidence 36899998865 4444433 2 456777776 7777777777766542 2368999999984 112 34
Q ss_pred CeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc-cCC---C---C------------CCCCCcc-cCHHHHH
Q 024021 174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF-PIS---D---H------------VGGPPYK-VSVSDYE 233 (274)
Q Consensus 174 ~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~-~~~---~---~------------~~~~~~~-~~~~~~~ 233 (274)
..-++++-+++.|++++....+++.|...+.||..++.... ... . . ...+.++ ....++.
T Consensus 170 ~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~~ 249 (297)
T COG3315 170 RPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPAARKTMRGEDLDRGELVYFGDDPAEIE 249 (297)
T ss_pred CCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccchhhhhhccccccccccceeccCCHHHHH
Confidence 55688889999999999999999999999999888777542 110 0 0 0112223 3589999
Q ss_pred HHHhcCCCcEEEEe
Q 024021 234 EVLQPMGFQAISIV 247 (274)
Q Consensus 234 ~~l~~~Gf~~~~~~ 247 (274)
.++.+.||......
T Consensus 250 ~~l~~~g~~~~~~~ 263 (297)
T COG3315 250 TWLAERGWRSTLNR 263 (297)
T ss_pred HHHHhcCEEEEecC
Confidence 99999999987763
No 312
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=94.79 E-value=0.019 Score=40.98 Aligned_cols=74 Identities=22% Similarity=0.318 Sum_probs=42.4
Q ss_pred CeeEEEeccccccc----ChhHHHHHHHHHHhcccCCcEEEEEEccCCC--CCCCC---------CcccCHHHHHHHHhc
Q 024021 174 LFDLIFDYTFFCAI----EPEMRAAWAQKIKDFLKPDGELITLMFPISD--HVGGP---------PYKVSVSDYEEVLQP 238 (274)
Q Consensus 174 ~~D~v~~~~~~~~~----~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~--~~~~~---------~~~~~~~~~~~~l~~ 238 (274)
+||+|+|..+--++ .++-+..+++++++.|+|||.+++.-.+-.. ..... ...+.++.+...+..
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~sY~~~~~~~~~~~~n~~~i~lrP~~F~~~L~~ 80 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKSYKKAKRLSEEIRENYKSIKLRPDQFEDYLLE 80 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHHHHTTTTS-HHHHHHHHH----GGGHHHHHTS
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHHHHHHhhhhHHHHhHHhceEEChHHHHHHHHh
Confidence 48999998875443 2345678999999999999999985432110 00000 112467788888887
Q ss_pred --CCCcEEEEe
Q 024021 239 --MGFQAISIV 247 (274)
Q Consensus 239 --~Gf~~~~~~ 247 (274)
.||..++..
T Consensus 81 ~evGF~~~e~~ 91 (110)
T PF06859_consen 81 PEVGFSSVEEL 91 (110)
T ss_dssp TTT---EEEEE
T ss_pred cccceEEEEEc
Confidence 588877643
No 313
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=94.79 E-value=0.035 Score=49.00 Aligned_cols=64 Identities=13% Similarity=-0.075 Sum_probs=55.0
Q ss_pred CCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcc-eEEEEcccCC
Q 024021 105 GALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKF-VSFLKADFFT 168 (274)
Q Consensus 105 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~-~~~~~~d~~~ 168 (274)
...++..|.|+-||.|-++..++..+++|++-|.++++++..+.+++.+...+. ++....|...
T Consensus 246 ~fk~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~ 310 (495)
T KOG2078|consen 246 LFKPGEVVCDVFAGVGPFALPAAKKGCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKD 310 (495)
T ss_pred ccCCcchhhhhhcCcCccccchhhcCcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHH
Confidence 456778999999999999999999999999999999999999999988776554 7777666544
No 314
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=94.66 E-value=0.14 Score=42.50 Aligned_cols=86 Identities=20% Similarity=0.158 Sum_probs=63.6
Q ss_pred CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-CCCeeEEEeccccc
Q 024021 107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-TELFDLIFDYTFFC 185 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~~~ 185 (274)
.+++...|+|+..|+++-.|.+++..|++||-.+-+ .... ..+.++-...|-++..| ..+.|-.+|..+=
T Consensus 210 ~~~M~avDLGAcPGGWTyqLVkr~m~V~aVDng~ma----~sL~----dtg~v~h~r~DGfk~~P~r~~idWmVCDmVE- 280 (358)
T COG2933 210 APGMWAVDLGACPGGWTYQLVKRNMRVYAVDNGPMA----QSLM----DTGQVTHLREDGFKFRPTRSNIDWMVCDMVE- 280 (358)
T ss_pred cCCceeeecccCCCccchhhhhcceEEEEeccchhh----hhhh----cccceeeeeccCcccccCCCCCceEEeehhc-
Confidence 456899999999999999999999999999986532 2111 22568899999999666 5678988876552
Q ss_pred ccChhHHHHHHHHHHhcccCC
Q 024021 186 AIEPEMRAAWAQKIKDFLKPD 206 (274)
Q Consensus 186 ~~~~~~~~~~l~~~~~~L~pg 206 (274)
....+-..+..+|..|
T Consensus 281 -----kP~rv~~li~~Wl~nG 296 (358)
T COG2933 281 -----KPARVAALIAKWLVNG 296 (358)
T ss_pred -----CcHHHHHHHHHHHHcc
Confidence 2234556677777644
No 315
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=94.61 E-value=0.11 Score=44.14 Aligned_cols=90 Identities=16% Similarity=0.147 Sum_probs=63.2
Q ss_pred cHHHHHHHhcCCCCCCe---EEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-
Q 024021 95 APIIVHLHQSGALPKGR---ALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT- 168 (274)
Q Consensus 95 ~~~~~~~~~~~~~~~~~---vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~- 168 (274)
...+..++........+ =+|||+|+...--.+.. .++...++|++...+..|+.+++.++++..+..++....+
T Consensus 86 ihwI~DLLss~q~~k~~i~~GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~kt 165 (419)
T KOG2912|consen 86 IHWIEDLLSSQQSDKSTIRRGIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKT 165 (419)
T ss_pred HHHHHHHhhcccCCCcceeeeeeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhh
Confidence 44466666554322233 48998887665544433 5678999999999999999999999988888888775543
Q ss_pred -------CCCCCCeeEEEecccc
Q 024021 169 -------WCPTELFDLIFDYTFF 184 (274)
Q Consensus 169 -------~~~~~~~D~v~~~~~~ 184 (274)
..+...||+..|+..|
T Consensus 166 ll~d~~~~~~e~~ydFcMcNPPF 188 (419)
T KOG2912|consen 166 LLMDALKEESEIIYDFCMCNPPF 188 (419)
T ss_pred cchhhhccCccceeeEEecCCch
Confidence 2233459999998765
No 316
>PRK10458 DNA cytosine methylase; Provisional
Probab=94.24 E-value=0.69 Score=42.27 Aligned_cols=128 Identities=12% Similarity=-0.021 Sum_probs=75.0
Q ss_pred CeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----------------
Q 024021 110 GRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP----------------- 171 (274)
Q Consensus 110 ~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~----------------- 171 (274)
.+++|+-||.|.+..-+...|. .|.++|+++.+.+--+.+.... +....+.+|+.+...
T Consensus 89 ~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~~---p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~~~ 165 (467)
T PRK10458 89 FRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYCD---PATHRFNEDIRDITLSHKEGVSDEEAAEHIRQ 165 (467)
T ss_pred ceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCCC---CccceeccChhhCccccccccchhhhhhhhhc
Confidence 5999999999999999988777 6788999999888877775321 112333445544210
Q ss_pred -CCCeeEEEecccccccCh-----------------hHHHHHHH---HHHhcccCCcEEEEEEccCCCCCCCCCcccCHH
Q 024021 172 -TELFDLIFDYTFFCAIEP-----------------EMRAAWAQ---KIKDFLKPDGELITLMFPISDHVGGPPYKVSVS 230 (274)
Q Consensus 172 -~~~~D~v~~~~~~~~~~~-----------------~~~~~~l~---~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~ 230 (274)
...+|+++....-..++. +.+..++- ++.+..+|. +++.+....-.. .....+.+
T Consensus 166 ~~p~~DvL~gGpPCQ~FS~AG~~k~~~~gr~~g~~~d~rg~Lf~~~~rii~~~kPk--~fvlENV~gl~s--~~~g~~f~ 241 (467)
T PRK10458 166 HIPDHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFECETQGTLFFDVARIIDAKRPA--IFVLENVKNLKS--HDKGKTFR 241 (467)
T ss_pred cCCCCCEEEEcCCCCccchhcccccccccccccccCCccccHHHHHHHHHHHhCCC--EEEEeCcHhhhc--ccccHHHH
Confidence 125798887655433321 11111222 233344555 444443322110 01112467
Q ss_pred HHHHHHhcCCCcEE
Q 024021 231 DYEEVLQPMGFQAI 244 (274)
Q Consensus 231 ~~~~~l~~~Gf~~~ 244 (274)
.+.+.|++.||.+.
T Consensus 242 ~i~~~L~~lGY~v~ 255 (467)
T PRK10458 242 IIMQTLDELGYDVA 255 (467)
T ss_pred HHHHHHHHcCCeEE
Confidence 88889999999975
No 317
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=94.05 E-value=0.53 Score=33.89 Aligned_cols=81 Identities=17% Similarity=0.160 Sum_probs=54.7
Q ss_pred CCeEEEEcCCcchh-HHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC--CCCeeEEEeccccc
Q 024021 109 KGRALVPGCGTGYD-VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--TELFDLIFDYTFFC 185 (274)
Q Consensus 109 ~~~vLDiG~G~G~~-~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~D~v~~~~~~~ 185 (274)
.++|+|+|-|-=.. +..|++.|+.++++|+++. +.+ ..++++..|++++.- -...|+|++.-
T Consensus 14 ~gkVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~-------~a~-----~g~~~v~DDitnP~~~iY~~A~lIYSiR--- 78 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRLAERGFDVLATDINEK-------TAP-----EGLRFVVDDITNPNISIYEGADLIYSIR--- 78 (129)
T ss_pred CCcEEEEccchHHHHHHHHHHcCCcEEEEecccc-------cCc-----ccceEEEccCCCccHHHhhCccceeecC---
Confidence 35999998776433 4567779999999999876 222 238999999998532 35678888643
Q ss_pred ccChhHHHHHHHHHHhcccCC
Q 024021 186 AIEPEMRAAWAQKIKDFLKPD 206 (274)
Q Consensus 186 ~~~~~~~~~~l~~~~~~L~pg 206 (274)
|++.+...+-.+.+.++-.
T Consensus 79 --pppEl~~~ildva~aVga~ 97 (129)
T COG1255 79 --PPPELQSAILDVAKAVGAP 97 (129)
T ss_pred --CCHHHHHHHHHHHHhhCCC
Confidence 3344455556666655544
No 318
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=94.04 E-value=0.27 Score=40.93 Aligned_cols=123 Identities=16% Similarity=0.116 Sum_probs=70.4
Q ss_pred CCCeEEEEcCCcchhHHHhhC-------CCCeEEEEeCC--------------------------hHHHHHHHHHhhcCC
Q 024021 108 PKGRALVPGCGTGYDVVAMAS-------PERYVVGLEIS--------------------------DIAIKKAEELSSSLP 154 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~-------~~~~v~~vD~~--------------------------~~~~~~a~~~~~~~~ 154 (274)
-++-|+|+||-.|..+..++. .+.+++++|.- ....+..++++...+
T Consensus 74 vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g 153 (248)
T PF05711_consen 74 VPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG 153 (248)
T ss_dssp S-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT
T ss_pred CCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC
Confidence 347899999999987754432 34578887742 113455555555544
Q ss_pred C-CcceEEEEcccCCCCCCC---CeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHH
Q 024021 155 N-AKFVSFLKADFFTWCPTE---LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVS 230 (274)
Q Consensus 155 ~-~~~~~~~~~d~~~~~~~~---~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~ 230 (274)
+ .+++.++.|.+.+..+.. ++-++..-.= + -+.....|+.++..|.|||++++-++... --..
T Consensus 154 l~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~D---l-YesT~~aLe~lyprl~~GGiIi~DDY~~~---------gcr~ 220 (248)
T PF05711_consen 154 LLDDNVRFVKGWFPDTLPDAPIERIALLHLDCD---L-YESTKDALEFLYPRLSPGGIIIFDDYGHP---------GCRK 220 (248)
T ss_dssp TSSTTEEEEES-HHHHCCC-TT--EEEEEE------S-HHHHHHHHHHHGGGEEEEEEEEESSTTTH---------HHHH
T ss_pred CCcccEEEECCcchhhhccCCCccEEEEEEecc---c-hHHHHHHHHHHHhhcCCCeEEEEeCCCCh---------HHHH
Confidence 3 458999999997744432 2322221111 1 13456789999999999999999765441 0245
Q ss_pred HHHHHHhcCCCcE
Q 024021 231 DYEEVLQPMGFQA 243 (274)
Q Consensus 231 ~~~~~l~~~Gf~~ 243 (274)
-+.+.++++|...
T Consensus 221 AvdeF~~~~gi~~ 233 (248)
T PF05711_consen 221 AVDEFRAEHGITD 233 (248)
T ss_dssp HHHHHHHHTT--S
T ss_pred HHHHHHHHcCCCC
Confidence 5667777777654
No 319
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=94.00 E-value=0.11 Score=46.30 Aligned_cols=103 Identities=16% Similarity=0.138 Sum_probs=64.5
Q ss_pred CCCCeEEEEcCCc-chhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcc-cCC----CCCCCCeeEE
Q 024021 107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD-FFT----WCPTELFDLI 178 (274)
Q Consensus 107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d-~~~----~~~~~~~D~v 178 (274)
.++.+||..|||. |..+..+++ .|. ++++++.+++..+.+++.... ..+.....+ +.+ ......+|+|
T Consensus 183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~----~vi~~~~~~~~~~~l~~~~~~~~~D~v 258 (386)
T cd08283 183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGA----ETINFEEVDDVVEALRELTGGRGPDVC 258 (386)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCc----EEEcCCcchHHHHHHHHHcCCCCCCEE
Confidence 3457999999987 777777776 665 699999999999988876311 112222221 111 2233468999
Q ss_pred Eeccccc-----------cc--ChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021 179 FDYTFFC-----------AI--EPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 179 ~~~~~~~-----------~~--~~~~~~~~l~~~~~~L~pgG~~~~~~ 213 (274)
+..-.-. +. +.......+..+.++++++|.++...
T Consensus 259 ld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 259 IDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred EECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 8642110 00 00112346788899999999998764
No 320
>PRK11524 putative methyltransferase; Provisional
Probab=94.00 E-value=0.24 Score=42.20 Aligned_cols=57 Identities=21% Similarity=0.374 Sum_probs=41.8
Q ss_pred cceEEEEcccCC---CCCCCCeeEEEecccccc------c----Ch----hHHHHHHHHHHhcccCCcEEEEEE
Q 024021 157 KFVSFLKADFFT---WCPTELFDLIFDYTFFCA------I----EP----EMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 157 ~~~~~~~~d~~~---~~~~~~~D~v~~~~~~~~------~----~~----~~~~~~l~~~~~~L~pgG~~~~~~ 213 (274)
.+.+++.+|..+ ..++++||+|++...+.. . .. .-...++..+.++|+|||.+++..
T Consensus 7 ~~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 7 EAKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred CCCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 346788899887 456789999999877642 0 00 113578899999999999998853
No 321
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=93.99 E-value=1.3 Score=38.69 Aligned_cols=135 Identities=14% Similarity=0.133 Sum_probs=82.9
Q ss_pred CCCCCeEEEEcCCcchhHHHhhCC------CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC--------CC-
Q 024021 106 ALPKGRALVPGCGTGYDVVAMASP------ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT--------WC- 170 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~~------~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--------~~- 170 (274)
..++.+|||+++..|.=+.++.+. ...|++-|+++..+...+....... .++..+...|+.. ..
T Consensus 153 v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~-~~~~~v~~~~~~~~p~~~~~~~~~ 231 (375)
T KOG2198|consen 153 VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP-SPNLLVTNHDASLFPNIYLKDGND 231 (375)
T ss_pred cCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC-CcceeeecccceeccccccccCch
Confidence 456789999999999999887762 2379999999988888877663332 2334343333332 11
Q ss_pred -CCCCeeEEEeccc------ccccCh---------------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccC
Q 024021 171 -PTELFDLIFDYTF------FCAIEP---------------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVS 228 (274)
Q Consensus 171 -~~~~~D~v~~~~~------~~~~~~---------------~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~ 228 (274)
....||-|++.-. +..-+. ...-.++.+-.++|++||.++..+.+...- . .
T Consensus 232 ~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpi------e-N 304 (375)
T KOG2198|consen 232 KEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPI------E-N 304 (375)
T ss_pred hhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCch------h-h
Confidence 2236898886311 111000 111367888899999999999877554311 1 3
Q ss_pred HHHHHHHHhcCC--CcEEEEee
Q 024021 229 VSDYEEVLQPMG--FQAISIVD 248 (274)
Q Consensus 229 ~~~~~~~l~~~G--f~~~~~~~ 248 (274)
...+.++++..| +.++.+..
T Consensus 305 EaVV~~~L~~~~~~~~lv~~~~ 326 (375)
T KOG2198|consen 305 EAVVQEALQKVGGAVELVDVSG 326 (375)
T ss_pred HHHHHHHHHHhcCcccceeecc
Confidence 455666666655 44444433
No 322
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=93.90 E-value=0.15 Score=43.45 Aligned_cols=108 Identities=21% Similarity=0.227 Sum_probs=72.3
Q ss_pred CeEEEEcCCcchhHHHhhC--------------CC--------CeEEEEeCCh--HHHHHHHHHhhcC-----------C
Q 024021 110 GRALVPGCGTGYDVVAMAS--------------PE--------RYVVGLEISD--IAIKKAEELSSSL-----------P 154 (274)
Q Consensus 110 ~~vLDiG~G~G~~~~~l~~--------------~~--------~~v~~vD~~~--~~~~~a~~~~~~~-----------~ 154 (274)
.+||.||.|.|.-...++. .+ ..++.+|+.+ ..+......+... .
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~ 167 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW 167 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence 6999999999876654432 01 4899999964 5555555544333 0
Q ss_pred -----CCcceEEEEcccCCCCCC--------CCeeEEEeccccccc---ChhHHHHHHHHHHhcccCCcEEEEEEccCC
Q 024021 155 -----NAKFVSFLKADFFTWCPT--------ELFDLIFDYTFFCAI---EPEMRAAWAQKIKDFLKPDGELITLMFPIS 217 (274)
Q Consensus 155 -----~~~~~~~~~~d~~~~~~~--------~~~D~v~~~~~~~~~---~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 217 (274)
..-+++|.+.|+.....+ ...++|...+.+.-+ .....-+++.++-..++||..++|++-+..
T Consensus 168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSpGS 246 (315)
T PF11312_consen 168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSPGS 246 (315)
T ss_pred ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCCCC
Confidence 112588999999873321 246777665554433 224456889999999999999999886654
No 323
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=93.87 E-value=0.19 Score=44.15 Aligned_cols=98 Identities=18% Similarity=0.174 Sum_probs=63.2
Q ss_pred CCCeEEEEcCCc-chhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc-ccC----CCCCCCCeeEEE
Q 024021 108 PKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA-DFF----TWCPTELFDLIF 179 (274)
Q Consensus 108 ~~~~vLDiG~G~-G~~~~~l~~-~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~-d~~----~~~~~~~~D~v~ 179 (274)
++.+|+=+|||+ |.++..+++ .|+ +|+++|.++..++.|++..... .+..... +.. .......+|+++
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~----~~~~~~~~~~~~~~~~~t~g~g~D~vi 243 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGAD----VVVNPSEDDAGAEILELTGGRGADVVI 243 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCe----EeecCccccHHHHHHHHhCCCCCCEEE
Confidence 345899999997 444455555 554 8999999999999999855221 1111111 111 112223699999
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCC
Q 024021 180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS 217 (274)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 217 (274)
-.-- ....+..+.+++++||.+.+.-....
T Consensus 244 e~~G--------~~~~~~~ai~~~r~gG~v~~vGv~~~ 273 (350)
T COG1063 244 EAVG--------SPPALDQALEALRPGGTVVVVGVYGG 273 (350)
T ss_pred ECCC--------CHHHHHHHHHHhcCCCEEEEEeccCC
Confidence 4322 12467889999999999888665543
No 324
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.53 E-value=3.5 Score=35.32 Aligned_cols=158 Identities=12% Similarity=0.071 Sum_probs=96.5
Q ss_pred HHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCC----CeEEEEeCChHHHHHHHHHhhcCC-----------------
Q 024021 96 PIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPE----RYVVGLEISDIAIKKAEELSSSLP----------------- 154 (274)
Q Consensus 96 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~----~~v~~vD~~~~~~~~a~~~~~~~~----------------- 154 (274)
..+..++.. ......|+.+|||.-.....|...+ ..++=||+.+....+.........
T Consensus 76 ~~v~~Fl~~-~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~ 154 (335)
T KOG2918|consen 76 HAVRAFLEQ-TDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSG 154 (335)
T ss_pred HHHHHHHHh-cCCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhccccccccccCc
Confidence 335555554 2223689999999988888887744 367778887666555511111100
Q ss_pred ---CCcceEEEEcccCCC-----------CCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC-
Q 024021 155 ---NAKFVSFLKADFFTW-----------CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH- 219 (274)
Q Consensus 155 ---~~~~~~~~~~d~~~~-----------~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~- 219 (274)
.+++-..+.+|+.+. ...+-.-++++=.++.+++++....++..+.........+...-..+.+.
T Consensus 155 ~~l~s~~Y~~~g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~~a~fv~YEQi~~~D~F 234 (335)
T KOG2918|consen 155 TDLHSGRYHLIGCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFENAHFVNYEQINPNDRF 234 (335)
T ss_pred ceeccCceeeeccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCCcccEEEEeccCCCChH
Confidence 123455566666531 11223456666678889988887788888888777666555544443332
Q ss_pred ---------CCCCC-----cccCHHHHHHHHhcCCCcEEEEeecccccC
Q 024021 220 ---------VGGPP-----YKVSVSDYEEVLQPMGFQAISIVDNKLAIG 254 (274)
Q Consensus 220 ---------~~~~~-----~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~ 254 (274)
..+.+ -..+.+...+-+.++||.-+.+.+...-+.
T Consensus 235 g~vM~~nlk~r~~~L~gle~y~s~Esq~~Rf~~~Gw~~v~a~Dm~ei~n 283 (335)
T KOG2918|consen 235 GKVMLANLKRRGCPLHGLETYNSIESQRSRFLKAGWEYVIAVDMNEIYN 283 (335)
T ss_pred HHHHHHHHHhcCCCCchhhhcccHHHHHHHHHhcCCceeehhhHHHHHH
Confidence 11222 224788888889999999988877544333
No 325
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=93.39 E-value=0.88 Score=42.04 Aligned_cols=98 Identities=17% Similarity=0.263 Sum_probs=62.7
Q ss_pred CCCCeEEEEcCCcchh-HHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-----------C----
Q 024021 107 LPKGRALVPGCGTGYD-VVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-----------W---- 169 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~-~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-----------~---- 169 (274)
.++.+|+=+|||.=.. +...++ .|+.|+++|.+++..+.++..- .++...|..+ .
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslG--------A~~v~i~~~e~~~~~~gya~~~s~~~ 234 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMG--------AEFLELDFEEEGGSGDGYAKVMSEEF 234 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC--------CeEEEeccccccccccchhhhcchhH
Confidence 4578999999997554 444444 7889999999999999888742 1222111100 0
Q ss_pred --------CC-CCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021 170 --------CP-TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (274)
Q Consensus 170 --------~~-~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 214 (274)
.. ...+|+|+.......-+.+ ..+.+.+.+.++|||.++....
T Consensus 235 ~~~~~~~~~~~~~gaDVVIetag~pg~~aP--~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 235 IKAEMALFAEQAKEVDIIITTALIPGKPAP--KLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHHHHHHHhccCCCCEEEECCCCCcccCc--chHHHHHHHhcCCCCEEEEEcc
Confidence 00 1368999976543221111 1234889999999999887654
No 326
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=93.19 E-value=0.035 Score=40.98 Aligned_cols=84 Identities=17% Similarity=0.176 Sum_probs=57.7
Q ss_pred CcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccC---C----CCCCCCeeEEEecccccccCh
Q 024021 118 GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFF---T----WCPTELFDLIFDYTFFCAIEP 189 (274)
Q Consensus 118 G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~---~----~~~~~~~D~v~~~~~~~~~~~ 189 (274)
|.|..+..+++ .|.+|+++|.++...+.+++.-. ..++..+-. + ......+|+|+..-. .
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga-------~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g-----~ 68 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKELGA-------DHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG-----S 68 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTE-------SEEEETTTSSHHHHHHHHTTTSSEEEEEESSS-----S
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhhcc-------cccccccccccccccccccccccceEEEEecC-----c
Confidence 45778888877 78999999999999999987541 112222111 1 233357999994322 1
Q ss_pred hHHHHHHHHHHhcccCCcEEEEEEccC
Q 024021 190 EMRAAWAQKIKDFLKPDGELITLMFPI 216 (274)
Q Consensus 190 ~~~~~~l~~~~~~L~pgG~~~~~~~~~ 216 (274)
...++...++++++|.++++....
T Consensus 69 ---~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 69 ---GDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp ---HHHHHHHHHHEEEEEEEEEESSTS
T ss_pred ---HHHHHHHHHHhccCCEEEEEEccC
Confidence 246788899999999999887654
No 327
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=93.18 E-value=3 Score=33.76 Aligned_cols=84 Identities=12% Similarity=0.054 Sum_probs=56.1
Q ss_pred cHHHHHHHhcCCCCCCeEEEEcCCcch--hHHHhh----CCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024021 95 APIIVHLHQSGALPKGRALVPGCGTGY--DVVAMA----SPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT 168 (274)
Q Consensus 95 ~~~~~~~~~~~~~~~~~vLDiG~G~G~--~~~~l~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 168 (274)
.+++.++.. ......+++..|+-|. .++.|+ +.|.++++|-.+++.....++.....+..+-++|+.++..+
T Consensus 30 aEfISAlAA--G~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e 107 (218)
T PF07279_consen 30 AEFISALAA--GWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPE 107 (218)
T ss_pred HHHHHHHhc--cccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHH
Confidence 444444443 4445788999766443 233332 26889999999988888888888777766668999988543
Q ss_pred --CCCCCCeeEEEe
Q 024021 169 --WCPTELFDLIFD 180 (274)
Q Consensus 169 --~~~~~~~D~v~~ 180 (274)
...-...|+++.
T Consensus 108 ~~~~~~~~iDF~vV 121 (218)
T PF07279_consen 108 EVMPGLKGIDFVVV 121 (218)
T ss_pred HHHhhccCCCEEEE
Confidence 223356898884
No 328
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=92.87 E-value=0.29 Score=42.23 Aligned_cols=92 Identities=23% Similarity=0.316 Sum_probs=58.7
Q ss_pred CCCCeEEEEcCC-cchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccC-------CCCCCCCeeE
Q 024021 107 LPKGRALVPGCG-TGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFF-------TWCPTELFDL 177 (274)
Q Consensus 107 ~~~~~vLDiG~G-~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~-------~~~~~~~~D~ 177 (274)
.++.+||..|+| .|..+..+++ .|.++++++.+++..+.+++.. . +.+..+-. .......+|+
T Consensus 164 ~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~g----~----~~~~~~~~~~~~~~~~~~~~~~~D~ 235 (338)
T cd08254 164 KPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKELG----A----DEVLNSLDDSPKDKKAAGLGGGFDV 235 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhC----C----CEEEcCCCcCHHHHHHHhcCCCceE
Confidence 345688888775 3666666666 7889999999999888875532 1 11111111 1123456998
Q ss_pred EEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021 178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (274)
Q Consensus 178 v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 214 (274)
|+..... ...++.+.+.|+++|.++....
T Consensus 236 vid~~g~--------~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 236 IFDFVGT--------QPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred EEECCCC--------HHHHHHHHHHhhcCCEEEEECC
Confidence 8843211 2356788899999999987653
No 329
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=92.49 E-value=0.34 Score=42.39 Aligned_cols=39 Identities=18% Similarity=0.143 Sum_probs=33.9
Q ss_pred CeEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHH
Q 024021 110 GRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEE 148 (274)
Q Consensus 110 ~~vLDiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~ 148 (274)
..|+|+|+|.|+++..+.- -|..|.+||-+....+.|++
T Consensus 155 ~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 155 DQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred CeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence 6899999999999998865 68899999999877777655
No 330
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=92.40 E-value=0.6 Score=40.75 Aligned_cols=96 Identities=19% Similarity=0.284 Sum_probs=56.2
Q ss_pred CCCCeEEEEcCCc-chhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCCeeEEEecc
Q 024021 107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYT 182 (274)
Q Consensus 107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~ 182 (274)
.++.+||=.|||. |..+..+++ .|+ +|+++|.+++.++.+++.-... -+.....++.+. ...+.+|+|+..-
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~----vi~~~~~~~~~~~~~~g~~D~vid~~ 243 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADK----LVNPQNDDLDHYKAEKGYFDVSFEVS 243 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcE----EecCCcccHHHHhccCCCCCEEEECC
Confidence 4567888887642 233344444 677 6999999999999887642110 011111122111 1123589988432
Q ss_pred cccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021 183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (274)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 214 (274)
. . ...+....++|++||.++....
T Consensus 244 G-----~---~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 244 G-----H---PSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred C-----C---HHHHHHHHHHhhcCCEEEEEcc
Confidence 1 1 1345677889999999888754
No 331
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=92.35 E-value=0.56 Score=44.47 Aligned_cols=90 Identities=10% Similarity=-0.031 Sum_probs=58.6
Q ss_pred CeEEEEcCCcchhHHHhh----CCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-----CCCCCeeEEEe
Q 024021 110 GRALVPGCGTGYDVVAMA----SPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-----CPTELFDLIFD 180 (274)
Q Consensus 110 ~~vLDiG~G~G~~~~~l~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~D~v~~ 180 (274)
.+|+=+|+ |..+..++ +.+..++.+|.+++.++.+++. ....+.+|..+. ..-++.|++++
T Consensus 401 ~~vII~G~--Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~--------g~~v~~GDat~~~~L~~agi~~A~~vv~ 470 (601)
T PRK03659 401 PQVIIVGF--GRFGQVIGRLLMANKMRITVLERDISAVNLMRKY--------GYKVYYGDATQLELLRAAGAEKAEAIVI 470 (601)
T ss_pred CCEEEecC--chHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC--------CCeEEEeeCCCHHHHHhcCCccCCEEEE
Confidence 46666655 45555444 3788999999999999888652 266789999872 22346787774
Q ss_pred cccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021 181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (274)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 214 (274)
. .+++.....+-...+.+.|...++.-..
T Consensus 471 ~-----~~d~~~n~~i~~~~r~~~p~~~IiaRa~ 499 (601)
T PRK03659 471 T-----CNEPEDTMKIVELCQQHFPHLHILARAR 499 (601)
T ss_pred E-----eCCHHHHHHHHHHHHHHCCCCeEEEEeC
Confidence 2 3333333344455566788888887663
No 332
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=92.31 E-value=0.57 Score=38.77 Aligned_cols=96 Identities=20% Similarity=0.222 Sum_probs=58.4
Q ss_pred CCCCeEEEEcCCc-chhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---CCCCCCeeEEEec
Q 024021 107 LPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPTELFDLIFDY 181 (274)
Q Consensus 107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~D~v~~~ 181 (274)
.++.+||-.|+|. |..+..+++ .|.++++++.++...+.++...... -+.....+... ....+.+|+++..
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~----~~~~~~~~~~~~~~~~~~~~~d~vi~~ 208 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADH----VIDYKEEDLEEELRLTGGGGADVVIDA 208 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCce----eccCCcCCHHHHHHHhcCCCCCEEEEC
Confidence 4567999999985 555555555 6789999999988877775542110 01101011100 1223569999853
Q ss_pred ccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021 182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (274)
Q Consensus 182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 214 (274)
..- . ..+..+.+.|+++|.++....
T Consensus 209 ~~~-----~---~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 209 VGG-----P---ETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred CCC-----H---HHHHHHHHhcccCCEEEEEcc
Confidence 221 0 245677888999999887653
No 333
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=91.63 E-value=2.4 Score=38.51 Aligned_cols=65 Identities=17% Similarity=0.012 Sum_probs=45.9
Q ss_pred CCCeEEEEcCCcchhHHHhhC----CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-----CCCCCeeEE
Q 024021 108 PKGRALVPGCGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-----CPTELFDLI 178 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~D~v 178 (274)
...+++=+|+ |..+..+++ .+..++.+|.+++.++.++... ..+.++.+|..+. ..-..+|.|
T Consensus 230 ~~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~------~~~~~i~gd~~~~~~L~~~~~~~a~~v 301 (453)
T PRK09496 230 PVKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL------PNTLVLHGDGTDQELLEEEGIDEADAF 301 (453)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC------CCCeEEECCCCCHHHHHhcCCccCCEE
Confidence 3468888877 555555444 6889999999999888777653 2467888888762 223568888
Q ss_pred Ee
Q 024021 179 FD 180 (274)
Q Consensus 179 ~~ 180 (274)
++
T Consensus 302 i~ 303 (453)
T PRK09496 302 IA 303 (453)
T ss_pred EE
Confidence 74
No 334
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=91.34 E-value=2 Score=39.78 Aligned_cols=107 Identities=14% Similarity=0.136 Sum_probs=68.2
Q ss_pred CCCeEEEEcCCcchhHHHhhC------CCCeEEEEeCChHHHHHHHHHhhcCCCC-cceEEEEcccCC-C--CCCCCeeE
Q 024021 108 PKGRALVPGCGTGYDVVAMAS------PERYVVGLEISDIAIKKAEELSSSLPNA-KFVSFLKADFFT-W--CPTELFDL 177 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~------~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~-~--~~~~~~D~ 177 (274)
+...+.|..||+|.++....+ ....++|.+..+.+...++.+....+.. +......+|-.. + ....+||.
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~~~~~~D~ 296 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWENENGFEV 296 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccccccccCCE
Confidence 446899999999999865432 1236999999999999999885443321 123333344333 1 12346888
Q ss_pred EEecccccc-c-----C---------------h--hHHHHHHHHHHhcccCCcEEEEEEc
Q 024021 178 IFDYTFFCA-I-----E---------------P--EMRAAWAQKIKDFLKPDGELITLMF 214 (274)
Q Consensus 178 v~~~~~~~~-~-----~---------------~--~~~~~~l~~~~~~L~pgG~~~~~~~ 214 (274)
|+++..+.. + + + +.-..++..+...|++||...++..
T Consensus 297 v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~~ 356 (501)
T TIGR00497 297 VVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVCF 356 (501)
T ss_pred EeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEec
Confidence 887765432 1 1 0 1124677888899999998655543
No 335
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=91.14 E-value=1.1 Score=42.22 Aligned_cols=107 Identities=15% Similarity=0.067 Sum_probs=63.3
Q ss_pred CeEEEEcCCcchhHHHhhC----CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-----CCCCCeeEEEe
Q 024021 110 GRALVPGCGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-----CPTELFDLIFD 180 (274)
Q Consensus 110 ~~vLDiG~G~G~~~~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~D~v~~ 180 (274)
.+++=+|||. .+..+++ .|..++.+|.+++.++.+++. ....+.+|..+. ..-+++|.+++
T Consensus 418 ~hiiI~G~G~--~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~--------g~~~i~GD~~~~~~L~~a~i~~a~~viv 487 (558)
T PRK10669 418 NHALLVGYGR--VGSLLGEKLLAAGIPLVVIETSRTRVDELRER--------GIRAVLGNAANEEIMQLAHLDCARWLLL 487 (558)
T ss_pred CCEEEECCCh--HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC--------CCeEEEcCCCCHHHHHhcCccccCEEEE
Confidence 5666666654 5544443 688999999999988888642 277899999872 22346786653
Q ss_pred cccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEE
Q 024021 181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAIS 245 (274)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 245 (274)
. .+++.....+-...+...|+..++... +..+-.+.+++.|-+.+-
T Consensus 488 ~-----~~~~~~~~~iv~~~~~~~~~~~iiar~--------------~~~~~~~~l~~~Gad~vv 533 (558)
T PRK10669 488 T-----IPNGYEAGEIVASAREKRPDIEIIARA--------------HYDDEVAYITERGANQVV 533 (558)
T ss_pred E-----cCChHHHHHHHHHHHHHCCCCeEEEEE--------------CCHHHHHHHHHcCCCEEE
Confidence 1 222222222223334456777777654 122344455667766443
No 336
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=91.07 E-value=0.75 Score=40.32 Aligned_cols=95 Identities=26% Similarity=0.214 Sum_probs=55.1
Q ss_pred CCCCeEEEEcCCc-chhHHHhhC-CCCeEEEEeC---ChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEec
Q 024021 107 LPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEI---SDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDY 181 (274)
Q Consensus 107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~~v~~vD~---~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~ 181 (274)
.++.+||=+|+|. |..+.++++ .|+++++++. ++...+.+++.-.. .+.....+..+......+|+|+..
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~-----~v~~~~~~~~~~~~~~~~d~vid~ 245 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGAT-----YVNSSKTPVAEVKLVGEFDLIIEA 245 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE-----EecCCccchhhhhhcCCCCEEEEC
Confidence 3567888888753 334445555 6779999986 67777777653211 111111111110112468988843
Q ss_pred ccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021 182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (274)
Q Consensus 182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 214 (274)
-. . ...+....+.|++||.+++...
T Consensus 246 ~g-----~---~~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 246 TG-----V---PPLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred cC-----C---HHHHHHHHHHccCCcEEEEEec
Confidence 21 1 1256778899999999887654
No 337
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=90.63 E-value=0.45 Score=34.99 Aligned_cols=89 Identities=18% Similarity=0.126 Sum_probs=46.7
Q ss_pred CCeEEEEcCCcchhH-HHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC--CCCeeEEEeccccc
Q 024021 109 KGRALVPGCGTGYDV-VAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--TELFDLIFDYTFFC 185 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~-~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~D~v~~~~~~~ 185 (274)
..+|+|+|-|.=... ..|.+.|..|+++|+.+. ..+ ..+.++..|++++.. -...|+|++...-.
T Consensus 14 ~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~-------~a~-----~g~~~v~DDif~P~l~iY~~a~lIYSiRPP~ 81 (127)
T PF03686_consen 14 YGKIVEVGIGFNPEVAKKLKERGFDVIATDINPR-------KAP-----EGVNFVVDDIFNPNLEIYEGADLIYSIRPPP 81 (127)
T ss_dssp SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-S----------------STTEE---SSS--HHHHTTEEEEEEES--T
T ss_pred CCcEEEECcCCCHHHHHHHHHcCCcEEEEECccc-------ccc-----cCcceeeecccCCCHHHhcCCcEEEEeCCCh
Confidence 459999988876443 455668899999999886 111 248899999998543 25789999765433
Q ss_pred ccChhHHHHHHHHHHhcccCCcEEEEEEccC
Q 024021 186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (274)
Q Consensus 186 ~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 216 (274)
-+ +..+-++.+.+ |.-+++...+.
T Consensus 82 El-----~~~il~lA~~v--~adlii~pL~~ 105 (127)
T PF03686_consen 82 EL-----QPPILELAKKV--GADLIIRPLGG 105 (127)
T ss_dssp TS-----HHHHHHHHHHH--T-EEEEE-BTT
T ss_pred HH-----hHHHHHHHHHh--CCCEEEECCCC
Confidence 22 33344444433 45566655444
No 338
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=90.56 E-value=2.8 Score=39.99 Aligned_cols=90 Identities=11% Similarity=0.075 Sum_probs=58.4
Q ss_pred CCeEEEEcCCcchhHHH----hhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-----CCCCCeeEEE
Q 024021 109 KGRALVPGCGTGYDVVA----MASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-----CPTELFDLIF 179 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~----l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~D~v~ 179 (274)
..+|+=+|||. .+.. +.+.+..++.+|.+++.++.+++. ....+.+|..+. ..-++.|+++
T Consensus 400 ~~~vII~G~Gr--~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~--------g~~v~~GDat~~~~L~~agi~~A~~vv 469 (621)
T PRK03562 400 QPRVIIAGFGR--FGQIVGRLLLSSGVKMTVLDHDPDHIETLRKF--------GMKVFYGDATRMDLLESAGAAKAEVLI 469 (621)
T ss_pred cCcEEEEecCh--HHHHHHHHHHhCCCCEEEEECCHHHHHHHHhc--------CCeEEEEeCCCHHHHHhcCCCcCCEEE
Confidence 35787777765 4433 344788999999999999988652 266789999872 2234678777
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021 180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 213 (274)
+. .+++.....+-...+.+.|+-.+++-.
T Consensus 470 v~-----~~d~~~n~~i~~~ar~~~p~~~iiaRa 498 (621)
T PRK03562 470 NA-----IDDPQTSLQLVELVKEHFPHLQIIARA 498 (621)
T ss_pred EE-----eCCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 42 233333344445555667777776644
No 339
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=90.46 E-value=1.1 Score=38.54 Aligned_cols=99 Identities=12% Similarity=0.035 Sum_probs=64.1
Q ss_pred CCCCCeEEEEcCCcchh-HHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc-----ccCC----CCCCC
Q 024021 106 ALPKGRALVPGCGTGYD-VVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA-----DFFT----WCPTE 173 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~-~~~l~~-~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~-----d~~~----~~~~~ 173 (274)
...+.+||-+|+|.=.+ +...++ -|+ +|+.+|+++..++.|++.-... +..... ++.+ .....
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~-----~~~~~~~~~~~~~~~~v~~~~g~~ 241 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATV-----TDPSSHKSSPQELAELVEKALGKK 241 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeE-----EeeccccccHHHHHHHHHhhcccc
Confidence 34568999999997444 444444 565 8999999999999999832211 111111 1111 12224
Q ss_pred CeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCC
Q 024021 174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS 217 (274)
Q Consensus 174 ~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 217 (274)
.+|+.+....++ ..++.....++.||.++++.++..
T Consensus 242 ~~d~~~dCsG~~--------~~~~aai~a~r~gGt~vlvg~g~~ 277 (354)
T KOG0024|consen 242 QPDVTFDCSGAE--------VTIRAAIKATRSGGTVVLVGMGAE 277 (354)
T ss_pred CCCeEEEccCch--------HHHHHHHHHhccCCEEEEeccCCC
Confidence 588888544433 345677889999999888887654
No 340
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=89.92 E-value=1.8 Score=34.20 Aligned_cols=89 Identities=13% Similarity=0.112 Sum_probs=55.7
Q ss_pred CeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcCCC--CcceEEEEcccCCC----------CCCCCe
Q 024021 110 GRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPN--AKFVSFLKADFFTW----------CPTELF 175 (274)
Q Consensus 110 ~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~~~d~~~~----------~~~~~~ 175 (274)
..|+.+|||-=.....+... +.+++-+|. |++++.-++.++..+. ..+.+++.+|+.+. ...+..
T Consensus 80 ~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~p 158 (183)
T PF04072_consen 80 RQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDRP 158 (183)
T ss_dssp SEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTSE
T ss_pred cEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCCC
Confidence 48999999887777666663 557777777 6666666665554421 12367899999861 123456
Q ss_pred eEEEecccccccChhHHHHHHHHH
Q 024021 176 DLIFDYTFFCAIEPEMRAAWAQKI 199 (274)
Q Consensus 176 D~v~~~~~~~~~~~~~~~~~l~~~ 199 (274)
-++++-+++.|++++....+++.+
T Consensus 159 tl~i~Egvl~Yl~~~~~~~ll~~i 182 (183)
T PF04072_consen 159 TLFIAEGVLMYLSPEQVDALLRAI 182 (183)
T ss_dssp EEEEEESSGGGS-HHHHHHHHHHH
T ss_pred eEEEEcchhhcCCHHHHHHHHHHh
Confidence 788888999999887776666654
No 341
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=89.82 E-value=2.4 Score=38.26 Aligned_cols=108 Identities=12% Similarity=-0.022 Sum_probs=66.3
Q ss_pred CCeEEEEcCCcchhHHHhh--CC--CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc-ccCC----CCCCCCeeEEE
Q 024021 109 KGRALVPGCGTGYDVVAMA--SP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA-DFFT----WCPTELFDLIF 179 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l~--~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~-d~~~----~~~~~~~D~v~ 179 (274)
+..++|+|.|.|.-.-.+. -+ ...++.||.+..+............ ...--++.. -+.. ....+.||+|+
T Consensus 201 pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~-~~g~~~v~~~~~~r~~~pi~~~~~yDlvi 279 (491)
T KOG2539|consen 201 PDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGS-HIGEPIVRKLVFHRQRLPIDIKNGYDLVI 279 (491)
T ss_pred hHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChh-hcCchhccccchhcccCCCCcccceeeEE
Confidence 4678888888765443333 23 3479999999999998887765510 000111111 1111 23345699999
Q ss_pred ecccccccChh-HHHH-HHHHHHhcccCCcEEEEEEccCC
Q 024021 180 DYTFFCAIEPE-MRAA-WAQKIKDFLKPDGELITLMFPIS 217 (274)
Q Consensus 180 ~~~~~~~~~~~-~~~~-~l~~~~~~L~pgG~~~~~~~~~~ 217 (274)
+.+.++.+... .+-. .-....+..++|+.+++++.+..
T Consensus 280 ~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~ 319 (491)
T KOG2539|consen 280 CAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTT 319 (491)
T ss_pred eeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCc
Confidence 99999887532 2223 33445566788889888876543
No 342
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=89.79 E-value=1.2 Score=37.87 Aligned_cols=62 Identities=23% Similarity=0.266 Sum_probs=53.5
Q ss_pred CCccHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcC
Q 024021 92 GQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSL 153 (274)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~ 153 (274)
..+...+..++.....++..|||.-+|+|..+......+...+|+|++++-++.+.++....
T Consensus 206 ~~P~~l~~r~i~~~s~~~diVlDpf~GsGtt~~aa~~~~r~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 206 QKPLALIERLIRDYSFPGDIVLDPFAGSGTTGIAAKNLGRRFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred CChHHHHHHHHHhcCCCCCEEeecCCCCChHHHHHHHcCCceEEEecCHHHHHHHHHHHHhh
Confidence 44566677777776777899999999999999999999999999999999999999988654
No 343
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=89.18 E-value=1 Score=40.73 Aligned_cols=105 Identities=19% Similarity=0.152 Sum_probs=69.2
Q ss_pred CCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC--------CCCCCCeeEE
Q 024021 109 KGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT--------WCPTELFDLI 178 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--------~~~~~~~D~v 178 (274)
+..+|-+|-|.|.+...+.. +..++++++++|++++.|++.+..... .+......|..+ ...+..||++
T Consensus 296 ~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~-~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl 374 (482)
T KOG2352|consen 296 GGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQS-DRNKVHIADGLDFLQRTAKSQQEDICPDVL 374 (482)
T ss_pred cCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhh-hhhhhhHhhchHHHHHHhhccccccCCcEE
Confidence 46888899999999887755 557999999999999999988744321 122222222221 1234578988
Q ss_pred Eec---cccccc--Chh--HHHHHHHHHHhcccCCcEEEEEEc
Q 024021 179 FDY---TFFCAI--EPE--MRAAWAQKIKDFLKPDGELITLMF 214 (274)
Q Consensus 179 ~~~---~~~~~~--~~~--~~~~~l~~~~~~L~pgG~~~~~~~ 214 (274)
+.. .-.+.+ |+. ....++..+...|.|.|.+++..-
T Consensus 375 ~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv 417 (482)
T KOG2352|consen 375 MVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLV 417 (482)
T ss_pred EEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEe
Confidence 852 011111 222 236788999999999999977543
No 344
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=88.62 E-value=1.3 Score=38.61 Aligned_cols=97 Identities=21% Similarity=0.257 Sum_probs=62.4
Q ss_pred CCCCeEEEEcC--CcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC----CCCCCCeeEEE
Q 024021 107 LPKGRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLIF 179 (274)
Q Consensus 107 ~~~~~vLDiG~--G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~----~~~~~~~D~v~ 179 (274)
.++.+||=.|+ |.|..+.+|++ .|+.++++--+++-.+.+++.-... -+.+...|+.+ ......+|+|+
T Consensus 141 ~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd~----vi~y~~~~~~~~v~~~t~g~gvDvv~ 216 (326)
T COG0604 141 KPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGADH----VINYREEDFVEQVRELTGGKGVDVVL 216 (326)
T ss_pred CCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCCCE----EEcCCcccHHHHHHHHcCCCCceEEE
Confidence 34678888884 45566777877 6768888887777666665554221 23444445443 23334699999
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCcEEEEEEccC
Q 024021 180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (274)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 216 (274)
..-- ...+.+..+.|+++|.++......
T Consensus 217 D~vG---------~~~~~~~l~~l~~~G~lv~ig~~~ 244 (326)
T COG0604 217 DTVG---------GDTFAASLAALAPGGRLVSIGALS 244 (326)
T ss_pred ECCC---------HHHHHHHHHHhccCCEEEEEecCC
Confidence 4222 234567888999999988866543
No 345
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=88.53 E-value=1.3 Score=39.03 Aligned_cols=113 Identities=19% Similarity=0.164 Sum_probs=70.7
Q ss_pred HHHHHhcC-CCCCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHh-------hcCCC-CcceEEEEccc
Q 024021 98 IVHLHQSG-ALPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELS-------SSLPN-AKFVSFLKADF 166 (274)
Q Consensus 98 ~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~-------~~~~~-~~~~~~~~~d~ 166 (274)
+....+.. ..++..-.|+|+|.|.....++.. ...-+|+++.+..-+.+..+. .-.|. ...++.+++++
T Consensus 181 l~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf 260 (419)
T KOG3924|consen 181 LRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSF 260 (419)
T ss_pred HHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeeccccc
Confidence 44444444 345578899999999998877762 236677777544433333221 11222 24578888888
Q ss_pred CCC----CCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021 167 FTW----CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 167 ~~~----~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 213 (274)
... .-....++|+++.+.. +++.... +..+..-+++|.+++-..
T Consensus 261 ~~~~~v~eI~~eatvi~vNN~~F--dp~L~lr-~~eil~~ck~gtrIiS~~ 308 (419)
T KOG3924|consen 261 LDPKRVTEIQTEATVIFVNNVAF--DPELKLR-SKEILQKCKDGTRIISSK 308 (419)
T ss_pred CCHHHHHHHhhcceEEEEecccC--CHHHHHh-hHHHHhhCCCcceEeccc
Confidence 762 2234678999887753 3333333 358888899999988644
No 346
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=88.52 E-value=0.63 Score=40.90 Aligned_cols=96 Identities=17% Similarity=0.134 Sum_probs=55.5
Q ss_pred CCCCeEEEEcCCc-chhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC----CCCCCCeeEEE
Q 024021 107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLIF 179 (274)
Q Consensus 107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~----~~~~~~~D~v~ 179 (274)
.++.+||=.|+|. |..+.++++ .|. +|+++|.+++..+.+++.-.. .-+.....+..+ ......+|+|+
T Consensus 175 ~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~----~~i~~~~~~~~~~i~~~~~~~g~d~vi 250 (358)
T TIGR03451 175 KRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGAT----HTVNSSGTDPVEAIRALTGGFGADVVI 250 (358)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCc----eEEcCCCcCHHHHHHHHhCCCCCCEEE
Confidence 4567888888643 333344554 677 599999999988888653210 001111112111 12234689988
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021 180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (274)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 214 (274)
..-. . ...+....+.+++||.+++...
T Consensus 251 d~~g--~------~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 251 DAVG--R------PETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred ECCC--C------HHHHHHHHHHhccCCEEEEECC
Confidence 4221 1 1245667788999999887653
No 347
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=88.36 E-value=2.4 Score=36.95 Aligned_cols=92 Identities=14% Similarity=0.052 Sum_probs=54.7
Q ss_pred CCCCeEEEEcCCcch-hHHHhhC--C-CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecc
Q 024021 107 LPKGRALVPGCGTGY-DVVAMAS--P-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYT 182 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~-~~~~l~~--~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~ 182 (274)
.++.+||=+|||.=. .+..+++ . +.+|+++|.+++.++.++. . + .. ....+.. ....+|+|+..-
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~---~---~~-~~~~~~~---~~~g~d~viD~~ 230 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-A---D---ET-YLIDDIP---EDLAVDHAFECV 230 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-c---C---ce-eehhhhh---hccCCcEEEECC
Confidence 456799999875422 2334443 3 3589999999988888864 2 1 11 1111111 112489888422
Q ss_pred cccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021 183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (274)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 214 (274)
- . ......+....++|++||.+++.-.
T Consensus 231 G--~---~~~~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 231 G--G---RGSQSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred C--C---CccHHHHHHHHHhCcCCcEEEEEee
Confidence 1 1 0012456788899999999887654
No 348
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=87.42 E-value=1.6 Score=33.35 Aligned_cols=36 Identities=19% Similarity=0.180 Sum_probs=24.1
Q ss_pred EEcCCcc--hhHHHhh----CCCCeEEEEeCChHHHHHHHHH
Q 024021 114 VPGCGTG--YDVVAMA----SPERYVVGLEISDIAIKKAEEL 149 (274)
Q Consensus 114 DiG~G~G--~~~~~l~----~~~~~v~~vD~~~~~~~~a~~~ 149 (274)
|||++.| .....+. .++.+++++|.+|..++..+.+
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 5554442 2567999999999999999888
No 349
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=87.30 E-value=6.2 Score=34.21 Aligned_cols=90 Identities=18% Similarity=0.087 Sum_probs=55.7
Q ss_pred CCCCeEEEEcCCc-chhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccc
Q 024021 107 LPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF 184 (274)
Q Consensus 107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~ 184 (274)
.++.+||=.|+|. |..+..+++ .|+++++++.+++..+.+++.-... .+ |..+. ..+.+|+++.....
T Consensus 164 ~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~-------vi--~~~~~-~~~~~d~~i~~~~~ 233 (329)
T TIGR02822 164 PPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAAS-------AG--GAYDT-PPEPLDAAILFAPA 233 (329)
T ss_pred CCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCce-------ec--ccccc-CcccceEEEECCCc
Confidence 4567899888642 333344554 7889999999999888887653211 11 11111 12357876632221
Q ss_pred cccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021 185 CAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (274)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 214 (274)
...+....++|++||.+++.-.
T Consensus 234 --------~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 234 --------GGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred --------HHHHHHHHHhhCCCcEEEEEec
Confidence 1356778899999999987654
No 350
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=87.23 E-value=12 Score=30.30 Aligned_cols=103 Identities=9% Similarity=-0.070 Sum_probs=60.2
Q ss_pred CCCeEEEEcCCcchhHH----HhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----------C
Q 024021 108 PKGRALVPGCGTGYDVV----AMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T 172 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~----~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-----------~ 172 (274)
.+++||-.|++ |..+. .+++.|++|++++-+++............ .++.++.+|+.+... -
T Consensus 4 ~~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 79 (238)
T PRK05786 4 KGKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY---GNIHYVVGDVSSTESARNVIEKAAKVL 79 (238)
T ss_pred CCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEECCCCCHHHHHHHHHHHHHHh
Confidence 45688888875 44433 33447999999999887666554443322 257888999886210 1
Q ss_pred CCeeEEEecccccccC-h---hH-----------HHHHHHHHHhcccCCcEEEEEEc
Q 024021 173 ELFDLIFDYTFFCAIE-P---EM-----------RAAWAQKIKDFLKPDGELITLMF 214 (274)
Q Consensus 173 ~~~D~v~~~~~~~~~~-~---~~-----------~~~~l~~~~~~L~pgG~~~~~~~ 214 (274)
+.+|.++........+ . +. ...+++.+...++++|.+++...
T Consensus 80 ~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss 136 (238)
T PRK05786 80 NAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSS 136 (238)
T ss_pred CCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEec
Confidence 3468777654321110 0 00 11235556666777887776553
No 351
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=87.07 E-value=3 Score=37.54 Aligned_cols=96 Identities=14% Similarity=0.067 Sum_probs=58.1
Q ss_pred HHHHHhcC--CCCCCeEEEEcCCc-chhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCC
Q 024021 98 IVHLHQSG--ALPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE 173 (274)
Q Consensus 98 ~~~~~~~~--~~~~~~vLDiG~G~-G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 173 (274)
+..++... ..++.+|+=+|+|. |......++ .|++|+.+|.++.....|+..- .+... ..+.. .
T Consensus 189 ~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G--------~~~~~--~~e~v--~ 256 (413)
T cd00401 189 IDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEG--------YEVMT--MEEAV--K 256 (413)
T ss_pred HHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcC--------CEEcc--HHHHH--c
Confidence 34444432 35688999999986 333333333 7889999999998877776531 11111 11111 3
Q ss_pred CeeEEEecccccccChhHHHHHHH-HHHhcccCCcEEEEEE
Q 024021 174 LFDLIFDYTFFCAIEPEMRAAWAQ-KIKDFLKPDGELITLM 213 (274)
Q Consensus 174 ~~D~v~~~~~~~~~~~~~~~~~l~-~~~~~L~pgG~~~~~~ 213 (274)
.+|+|+..-. . ...+. ...+.+++||+++.+.
T Consensus 257 ~aDVVI~atG-------~-~~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 257 EGDIFVTTTG-------N-KDIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred CCCEEEECCC-------C-HHHHHHHHHhcCCCCcEEEEeC
Confidence 4799985321 1 12344 4588999999987765
No 352
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=86.97 E-value=1.8 Score=38.18 Aligned_cols=96 Identities=17% Similarity=0.157 Sum_probs=54.9
Q ss_pred CCCCeEEEEcCCc-chhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---CCCCCCeeEEEe
Q 024021 107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPTELFDLIFD 180 (274)
Q Consensus 107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~D~v~~ 180 (274)
.++.+||=.|+|. |..+..+++ .|+ .|+++|.+++..+.+++.-... -+.....|..+ ....+.+|+|+.
T Consensus 190 ~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~----~i~~~~~~~~~~i~~~~~~g~d~vid 265 (371)
T cd08281 190 RPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATA----TVNAGDPNAVEQVRELTGGGVDYAFE 265 (371)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCce----EeCCCchhHHHHHHHHhCCCCCEEEE
Confidence 3456787787642 333344444 687 6999999999988886542110 01111112111 011226899984
Q ss_pred cccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021 181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (274)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 214 (274)
.-. . ...+....++++++|.++....
T Consensus 266 ~~G--~------~~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 266 MAG--S------VPALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred CCC--C------hHHHHHHHHHHhcCCEEEEEcc
Confidence 221 1 1345677788999999887553
No 353
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=86.91 E-value=9.1 Score=32.65 Aligned_cols=60 Identities=13% Similarity=0.134 Sum_probs=46.5
Q ss_pred CCCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024021 106 ALPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT 168 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 168 (274)
...+..||==|+|.|. .+..+++.|+.+...|++++......+.....| ++....+|+.+
T Consensus 35 ~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~ 97 (300)
T KOG1201|consen 35 SVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISD 97 (300)
T ss_pred hccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC---ceeEEEecCCC
Confidence 3456789988988883 456777899999999999988887777766553 58888888865
No 354
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=86.87 E-value=4 Score=35.77 Aligned_cols=95 Identities=17% Similarity=0.105 Sum_probs=58.2
Q ss_pred CCCCeEEEEcC--CcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc-ccCC---CCCCCCeeEEE
Q 024021 107 LPKGRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA-DFFT---WCPTELFDLIF 179 (274)
Q Consensus 107 ~~~~~vLDiG~--G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~-d~~~---~~~~~~~D~v~ 179 (274)
.++.+||=.|+ |.|..+.++++ .|.++++++.+++..+.+++.+... .-+..... ++.+ ....+.+|+|+
T Consensus 157 ~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa~---~vi~~~~~~~~~~~i~~~~~~gvD~v~ 233 (348)
T PLN03154 157 KKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGFD---EAFNYKEEPDLDAALKRYFPEGIDIYF 233 (348)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCCC---EEEECCCcccHHHHHHHHCCCCcEEEE
Confidence 45678888887 46677777776 7889999999988877776332111 00111111 2211 11124689988
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021 180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 213 (274)
.. .. ...+....++|++||.++++-
T Consensus 234 d~-----vG----~~~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 234 DN-----VG----GDMLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred EC-----CC----HHHHHHHHHHhccCCEEEEEC
Confidence 42 11 124577888999999988754
No 355
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=86.48 E-value=2.9 Score=36.06 Aligned_cols=94 Identities=16% Similarity=0.136 Sum_probs=57.3
Q ss_pred CCCCeEEEEcC--CcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc-ccCC---CCCCCCeeEEE
Q 024021 107 LPKGRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA-DFFT---WCPTELFDLIF 179 (274)
Q Consensus 107 ~~~~~vLDiG~--G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~-d~~~---~~~~~~~D~v~ 179 (274)
.++.+||=.|+ |.|..+..+++ .|.++++++-+++..+.+++.- ...-+..... +..+ ....+.+|+|+
T Consensus 137 ~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~lG----a~~vi~~~~~~~~~~~~~~~~~~gvdvv~ 212 (325)
T TIGR02825 137 KGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKLG----FDVAFNYKTVKSLEETLKKASPDGYDCYF 212 (325)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcC----CCEEEeccccccHHHHHHHhCCCCeEEEE
Confidence 45678888874 56667777766 7889999999988888876532 1000111111 1111 11224689998
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021 180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 213 (274)
.. ... ..+....++|+++|.++...
T Consensus 213 d~-----~G~----~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 213 DN-----VGG----EFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred EC-----CCH----HHHHHHHHHhCcCcEEEEec
Confidence 42 111 23467889999999998754
No 356
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=86.31 E-value=4.8 Score=34.08 Aligned_cols=84 Identities=17% Similarity=0.142 Sum_probs=50.7
Q ss_pred eEEEEcCCc--chhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccccC
Q 024021 111 RALVPGCGT--GYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIE 188 (274)
Q Consensus 111 ~vLDiG~G~--G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~ 188 (274)
+|.=||+|. |.++..+.+.|.+|+++|.+++.++.+.... . +.....+. + .....|+|+.. ++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g----~---~~~~~~~~-~--~~~~aDlVila-----vp 66 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERG----L---VDEASTDL-S--LLKDCDLVILA-----LP 66 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCC----C---cccccCCH-h--HhcCCCEEEEc-----CC
Confidence 455677664 3445566667889999999998887776531 1 11111111 1 12357888853 34
Q ss_pred hhHHHHHHHHHHhcccCCcEE
Q 024021 189 PEMRAAWAQKIKDFLKPDGEL 209 (274)
Q Consensus 189 ~~~~~~~l~~~~~~L~pgG~~ 209 (274)
......+++.+...++++..+
T Consensus 67 ~~~~~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 67 IGLLLPPSEQLIPALPPEAIV 87 (279)
T ss_pred HHHHHHHHHHHHHhCCCCcEE
Confidence 444556778888888776544
No 357
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=86.09 E-value=1.3 Score=38.36 Aligned_cols=95 Identities=21% Similarity=0.271 Sum_probs=57.1
Q ss_pred CCCCeEEEEcCCc-chhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC----CCCCCCeeEEEe
Q 024021 107 LPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLIFD 180 (274)
Q Consensus 107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~----~~~~~~~D~v~~ 180 (274)
.++.+||-.|+|. |..+..+++ .|.+++++..+++..+.+++.... .-+.....++.+ ......+|+++.
T Consensus 158 ~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~g~~----~v~~~~~~~~~~~l~~~~~~~~vd~vld 233 (337)
T cd08261 158 TAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFARELGAD----DTINVGDEDVAARLRELTDGEGADVVID 233 (337)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHhCCC----EEecCcccCHHHHHHHHhCCCCCCEEEE
Confidence 3457888888753 555566665 788999998888888777543210 101111112111 223346899985
Q ss_pred cccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021 181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 213 (274)
... . ...+..+.+.|+++|.++...
T Consensus 234 ~~g----~----~~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 234 ATG----N----PASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred CCC----C----HHHHHHHHHHHhcCCEEEEEc
Confidence 321 1 134577888999999987654
No 358
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=85.64 E-value=1.6 Score=36.86 Aligned_cols=96 Identities=19% Similarity=0.092 Sum_probs=55.1
Q ss_pred CCCCeEEEEcCCc-chhHHHhhC-CCCe-EEEEeCChHHHHHHHHHhhcCCCCcceEEEE-cc-cCCCCCCCCeeEEEec
Q 024021 107 LPKGRALVPGCGT-GYDVVAMAS-PERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLK-AD-FFTWCPTELFDLIFDY 181 (274)
Q Consensus 107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~-~d-~~~~~~~~~~D~v~~~ 181 (274)
.++.+||=.|+|. |..+..+++ .|.+ |+++|.+++..+.+++.-...- +.... .+ +.+......+|+|+..
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~----i~~~~~~~~~~~~~~~~g~d~vid~ 194 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATAL----AEPEVLAERQGGLQNGRGVDVALEF 194 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcEe----cCchhhHHHHHHHhCCCCCCEEEEC
Confidence 3567888887642 223344444 6775 9999999988888876432110 00000 00 1111223458998842
Q ss_pred ccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021 182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (274)
Q Consensus 182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 214 (274)
-. . ...++...+.++++|.++....
T Consensus 195 ~G-----~---~~~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 195 SG-----A---TAAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred CC-----C---hHHHHHHHHHhcCCCEEEEecc
Confidence 11 0 2346778889999999887653
No 359
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=85.54 E-value=17 Score=30.06 Aligned_cols=75 Identities=21% Similarity=0.121 Sum_probs=45.2
Q ss_pred CCCCeEEEEcCCcc-hhHH----HhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------
Q 024021 107 LPKGRALVPGCGTG-YDVV----AMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC----------- 170 (274)
Q Consensus 107 ~~~~~vLDiG~G~G-~~~~----~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----------- 170 (274)
..++++|-.|+++| ..+. .+++.|++|+.++.+....+..++..... ..+.++.+|+.+..
T Consensus 8 ~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~v~~~~~~~~~ 84 (258)
T PRK07533 8 LAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEEL---DAPIFLPLDVREPGQLEAVFARIAE 84 (258)
T ss_pred cCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhh---ccceEEecCcCCHHHHHHHHHHHHH
Confidence 34678899998752 4443 44558899999888765433333332222 12456778887621
Q ss_pred CCCCeeEEEecccc
Q 024021 171 PTELFDLIFDYTFF 184 (274)
Q Consensus 171 ~~~~~D~v~~~~~~ 184 (274)
..++.|+++.+..+
T Consensus 85 ~~g~ld~lv~nAg~ 98 (258)
T PRK07533 85 EWGRLDFLLHSIAF 98 (258)
T ss_pred HcCCCCEEEEcCcc
Confidence 12468999987543
No 360
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=85.47 E-value=20 Score=32.56 Aligned_cols=89 Identities=15% Similarity=0.105 Sum_probs=55.4
Q ss_pred eEEEEcCCcchhHHHhhC----CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-----CCCCCeeEEEec
Q 024021 111 RALVPGCGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-----CPTELFDLIFDY 181 (274)
Q Consensus 111 ~vLDiG~G~G~~~~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~D~v~~~ 181 (274)
+|+=+|+ |..+..+++ .|..|+.+|.+++.++.+++.. .+.++.+|..+. ..-..+|.|++.
T Consensus 2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~-------~~~~~~gd~~~~~~l~~~~~~~a~~vi~~ 72 (453)
T PRK09496 2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRL-------DVRTVVGNGSSPDVLREAGAEDADLLIAV 72 (453)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhc-------CEEEEEeCCCCHHHHHHcCCCcCCEEEEe
Confidence 4666666 677766654 6889999999999877765422 367888888761 223568887753
Q ss_pred ccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021 182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 213 (274)
. +++.....+....+.+.|.-.+++..
T Consensus 73 ~-----~~~~~n~~~~~~~r~~~~~~~ii~~~ 99 (453)
T PRK09496 73 T-----DSDETNMVACQIAKSLFGAPTTIARV 99 (453)
T ss_pred c-----CChHHHHHHHHHHHHhcCCCeEEEEE
Confidence 2 22233344455556665555555543
No 361
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=85.14 E-value=2.6 Score=32.58 Aligned_cols=111 Identities=16% Similarity=0.045 Sum_probs=62.6
Q ss_pred eEEEEcCCcchhHHHhh----CCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccc
Q 024021 111 RALVPGCGTGYDVVAMA----SPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA 186 (274)
Q Consensus 111 ~vLDiG~G~G~~~~~l~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~ 186 (274)
+|-=||+ |..+..++ +.|..|++.|.+++..+...+.. .+. ..+..+.. ...|+|++.-.
T Consensus 3 ~Ig~IGl--G~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g--------~~~-~~s~~e~~--~~~dvvi~~v~--- 66 (163)
T PF03446_consen 3 KIGFIGL--GNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAG--------AEV-ADSPAEAA--EQADVVILCVP--- 66 (163)
T ss_dssp EEEEE----SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTT--------EEE-ESSHHHHH--HHBSEEEE-SS---
T ss_pred EEEEEch--HHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhh--------hhh-hhhhhhHh--hcccceEeecc---
Confidence 3444555 45555444 47999999999998776665442 111 12222211 23588884322
Q ss_pred cChhHHHHHHHH--HHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEe
Q 024021 187 IEPEMRAAWAQK--IKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIV 247 (274)
Q Consensus 187 ~~~~~~~~~l~~--~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 247 (274)
+++....++.. +...|++|..++-.. . ...-+..++.+.++.+|...++..
T Consensus 67 -~~~~v~~v~~~~~i~~~l~~g~iiid~s--T-------~~p~~~~~~~~~~~~~g~~~vdap 119 (163)
T PF03446_consen 67 -DDDAVEAVLFGENILAGLRPGKIIIDMS--T-------ISPETSRELAERLAAKGVRYVDAP 119 (163)
T ss_dssp -SHHHHHHHHHCTTHGGGS-TTEEEEE-S--S---------HHHHHHHHHHHHHTTEEEEEEE
T ss_pred -cchhhhhhhhhhHHhhccccceEEEecC--C-------cchhhhhhhhhhhhhccceeeeee
Confidence 23556677777 888888777665432 1 111246788888888897666543
No 362
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=85.12 E-value=4.4 Score=35.01 Aligned_cols=92 Identities=22% Similarity=0.339 Sum_probs=55.9
Q ss_pred CCCCeEEEEcCCc-chhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc---ccCCCC-CCCCeeEEE
Q 024021 107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA---DFFTWC-PTELFDLIF 179 (274)
Q Consensus 107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~---d~~~~~-~~~~~D~v~ 179 (274)
.++.+||-.|||. |..+..+++ .|. .+++++.+++..+.+++... + .++.. ++.... ..+.+|+++
T Consensus 164 ~~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~-----~--~vi~~~~~~~~~~~~~~~~vd~vl 236 (339)
T cd08232 164 LAGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGA-----D--ETVNLARDPLAAYAADKGDFDVVF 236 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCC-----C--EEEcCCchhhhhhhccCCCccEEE
Confidence 3567888888764 455555555 677 79999998888776655321 1 11111 111111 123589998
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021 180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 213 (274)
..... ...++.+.+.|+++|.++...
T Consensus 237 d~~g~--------~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 237 EASGA--------PAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred ECCCC--------HHHHHHHHHHHhcCCEEEEEe
Confidence 53221 124577889999999988754
No 363
>PRK05872 short chain dehydrogenase; Provisional
Probab=84.97 E-value=18 Score=30.76 Aligned_cols=75 Identities=11% Similarity=0.077 Sum_probs=47.7
Q ss_pred CCCCeEEEEcCCcchh---HHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------CC
Q 024021 107 LPKGRALVPGCGTGYD---VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PT 172 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~---~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~ 172 (274)
..++++|-.|++.|.- +..+++.|++|+.++.+++.++...+.... ..++..+.+|+.+.. ..
T Consensus 7 l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~---~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 83 (296)
T PRK05872 7 LAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELGG---DDRVLTVVADVTDLAAMQAAAEEAVERF 83 (296)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC---CCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 4467888887655422 234445899999999988876665544422 134566678887621 11
Q ss_pred CCeeEEEecccc
Q 024021 173 ELFDLIFDYTFF 184 (274)
Q Consensus 173 ~~~D~v~~~~~~ 184 (274)
+++|+++.+...
T Consensus 84 g~id~vI~nAG~ 95 (296)
T PRK05872 84 GGIDVVVANAGI 95 (296)
T ss_pred CCCCEEEECCCc
Confidence 468999987543
No 364
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=84.67 E-value=2.8 Score=36.35 Aligned_cols=94 Identities=16% Similarity=0.223 Sum_probs=53.9
Q ss_pred CCCeEEEEcCC-cchhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccC----CCCCCCCeeEEEe
Q 024021 108 PKGRALVPGCG-TGYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFF----TWCPTELFDLIFD 180 (274)
Q Consensus 108 ~~~~vLDiG~G-~G~~~~~l~~-~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~----~~~~~~~~D~v~~ 180 (274)
++.+||-.|+| .|..+..+++ .|. .+++++.++...+.+++.... .-+.....++. .....+.+|+++.
T Consensus 167 ~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~~----~vi~~~~~~~~~~i~~~~~~~~~d~vld 242 (347)
T cd05278 167 PGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGAT----DIINPKNGDIVEQILELTGGRGVDCVIE 242 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCCc----EEEcCCcchHHHHHHHHcCCCCCcEEEE
Confidence 45678777764 3555555655 675 788888888777766643210 00111111111 1223356999885
Q ss_pred cccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021 181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 213 (274)
...- ...+....+.|+++|.++...
T Consensus 243 ~~g~--------~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 243 AVGF--------EETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred ccCC--------HHHHHHHHHHhhcCCEEEEEc
Confidence 3111 135677788999999988653
No 365
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=84.65 E-value=3.5 Score=35.68 Aligned_cols=96 Identities=18% Similarity=0.202 Sum_probs=54.3
Q ss_pred CCCCeEEEEcCCc-chhHHHhhC-CCCe-EEEEeCChHHHHHHHHHhhcCCCCcceEEEEcc---cCCCCCCCCeeEEEe
Q 024021 107 LPKGRALVPGCGT-GYDVVAMAS-PERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD---FFTWCPTELFDLIFD 180 (274)
Q Consensus 107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d---~~~~~~~~~~D~v~~ 180 (274)
.++.+||=.|+|. |..+..+++ .|++ |++++.+++..+.+++.-... -+.....+ +.+......+|+|+.
T Consensus 162 ~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~----~i~~~~~~~~~~~~~~~~~~~d~vid 237 (339)
T cd08239 162 SGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADF----VINSGQDDVQEIRELTSGAGADVAIE 237 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCE----EEcCCcchHHHHHHHhCCCCCCEEEE
Confidence 4567888887632 222333444 6777 999999998888886542110 01111111 111222346999984
Q ss_pred cccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021 181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (274)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 214 (274)
... . ...+....+.|+++|.+++...
T Consensus 238 ~~g-----~---~~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 238 CSG-----N---TAARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred CCC-----C---HHHHHHHHHHhhcCCEEEEEcC
Confidence 321 1 1234567788999999887553
No 366
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=84.26 E-value=3.7 Score=34.01 Aligned_cols=74 Identities=18% Similarity=0.054 Sum_probs=49.8
Q ss_pred CCCCeEEEEcCCcchhHHHhh----CCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----------
Q 024021 107 LPKGRALVPGCGTGYDVVAMA----SPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP----------- 171 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~----------- 171 (274)
.+++++|=.|+ +|..+..++ +.|++|+.++.++...+.........+ .++.++.+|+.+...
T Consensus 10 ~~~k~ilItGa-~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~Dl~d~~~i~~~~~~~~~~ 86 (259)
T PRK08213 10 LSGKTALVTGG-SRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALG--IDALWIAADVADEADIERLAEETLER 86 (259)
T ss_pred cCCCEEEEECC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 45678888884 555555544 478899999998877666655543332 457889999986211
Q ss_pred CCCeeEEEeccc
Q 024021 172 TELFDLIFDYTF 183 (274)
Q Consensus 172 ~~~~D~v~~~~~ 183 (274)
.++.|.|+.+..
T Consensus 87 ~~~id~vi~~ag 98 (259)
T PRK08213 87 FGHVDILVNNAG 98 (259)
T ss_pred hCCCCEEEECCC
Confidence 146899887654
No 367
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=84.13 E-value=3.1 Score=35.72 Aligned_cols=86 Identities=17% Similarity=0.129 Sum_probs=51.9
Q ss_pred CCCeEEEEcCC-cchhHHHhhC-CCCe-EEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccc
Q 024021 108 PKGRALVPGCG-TGYDVVAMAS-PERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF 184 (274)
Q Consensus 108 ~~~~vLDiG~G-~G~~~~~l~~-~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~ 184 (274)
++.+||=+||| .|..+.++++ .|++ +.++|.+++.++.+.... .+ |..+. ....+|+|+..-.
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~----------~i--~~~~~-~~~g~Dvvid~~G- 209 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYE----------VL--DPEKD-PRRDYRAIYDASG- 209 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcc----------cc--Chhhc-cCCCCCEEEECCC-
Confidence 45678888764 2444455555 6775 777898887776665321 00 11111 1246899884321
Q ss_pred cccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021 185 CAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (274)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 214 (274)
. ...++...++|+++|.+++.-.
T Consensus 210 ----~---~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 210 ----D---PSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred ----C---HHHHHHHHHhhhcCcEEEEEee
Confidence 1 1345778889999999987654
No 368
>PF11253 DUF3052: Protein of unknown function (DUF3052); InterPro: IPR021412 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=83.79 E-value=11 Score=27.67 Aligned_cols=73 Identities=16% Similarity=0.090 Sum_probs=52.9
Q ss_pred CCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024021 171 PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNK 250 (274)
Q Consensus 171 ~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 250 (274)
..+-+|+|+..+-- .+..+...|-.+.+.|..+|.+.+..... +.+-+.++.++.+....+|+...+.....
T Consensus 42 ~ddvvD~vllWwR~---~DgDL~D~LvDa~~~L~d~G~IWvltPK~-----gr~g~V~~~~I~eaA~taGL~~t~~~~v~ 113 (127)
T PF11253_consen 42 YDDVVDVVLLWWRD---DDGDLVDALVDARTNLADDGVIWVLTPKA-----GRPGHVEPSDIREAAPTAGLVQTKSCAVG 113 (127)
T ss_pred ccccccEEEEEEEC---CcchHHHHHHHHHhhhcCCCEEEEEccCC-----CCCCCCCHHHHHHHHhhcCCeeeeeeccC
Confidence 34567888754332 23455667777888999999988877544 33455689999999999999998877654
Q ss_pred c
Q 024021 251 L 251 (274)
Q Consensus 251 ~ 251 (274)
.
T Consensus 114 ~ 114 (127)
T PF11253_consen 114 D 114 (127)
T ss_pred C
Confidence 3
No 369
>PRK07109 short chain dehydrogenase; Provisional
Probab=83.79 E-value=21 Score=31.00 Aligned_cols=73 Identities=14% Similarity=0.016 Sum_probs=48.9
Q ss_pred CCCeEEEEcCCcchhH----HHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----------C
Q 024021 108 PKGRALVPGCGTGYDV----VAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T 172 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~----~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-----------~ 172 (274)
.+++||=.|++.| ++ ..+++.|++|+.++.+++.++...+.+...+ .++.++.+|+.+... -
T Consensus 7 ~~k~vlITGas~g-IG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g--~~~~~v~~Dv~d~~~v~~~~~~~~~~~ 83 (334)
T PRK07109 7 GRQVVVITGASAG-VGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAG--GEALAVVADVADAEAVQAAADRAEEEL 83 (334)
T ss_pred CCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHHHC
Confidence 3467787776544 33 3445589999999998887776665554433 458888999877211 1
Q ss_pred CCeeEEEeccc
Q 024021 173 ELFDLIFDYTF 183 (274)
Q Consensus 173 ~~~D~v~~~~~ 183 (274)
+++|+++.+..
T Consensus 84 g~iD~lInnAg 94 (334)
T PRK07109 84 GPIDTWVNNAM 94 (334)
T ss_pred CCCCEEEECCC
Confidence 46899887654
No 370
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=83.72 E-value=9.1 Score=34.16 Aligned_cols=67 Identities=22% Similarity=0.092 Sum_probs=47.0
Q ss_pred CeEEEEcCCcchhHHHhh----CCC-CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC----CCCCeeEEEe
Q 024021 110 GRALVPGCGTGYDVVAMA----SPE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC----PTELFDLIFD 180 (274)
Q Consensus 110 ~~vLDiG~G~G~~~~~l~----~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~D~v~~ 180 (274)
++||=||| |..+...+ +.+ .+|+..|-+++.++.+...... +++....|+.+.. .-..+|+|+.
T Consensus 2 ~~ilviGa--G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~-----~v~~~~vD~~d~~al~~li~~~d~VIn 74 (389)
T COG1748 2 MKILVIGA--GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGG-----KVEALQVDAADVDALVALIKDFDLVIN 74 (389)
T ss_pred CcEEEECC--chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccc-----cceeEEecccChHHHHHHHhcCCEEEE
Confidence 47899999 55554433 355 7999999999988888776532 5888999987731 1135699986
Q ss_pred ccc
Q 024021 181 YTF 183 (274)
Q Consensus 181 ~~~ 183 (274)
...
T Consensus 75 ~~p 77 (389)
T COG1748 75 AAP 77 (389)
T ss_pred eCC
Confidence 544
No 371
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=83.61 E-value=3.9 Score=35.42 Aligned_cols=95 Identities=17% Similarity=0.198 Sum_probs=54.9
Q ss_pred CCCCeEEEEcCCc-chhHHHhhC-CCCe-EEEEeCChHHHHHHHHHhhcCCCCcceEEE---EcccCCCCCCCCeeEEEe
Q 024021 107 LPKGRALVPGCGT-GYDVVAMAS-PERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFL---KADFFTWCPTELFDLIFD 180 (274)
Q Consensus 107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~---~~d~~~~~~~~~~D~v~~ 180 (274)
.++.+||-.|+|. |..+..+++ .|.+ +++++-++...+.+++.. ...-+... ...+........+|+++.
T Consensus 158 ~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~g----~~~~~~~~~~~~~~~~~~~~~~~~d~vld 233 (343)
T cd08236 158 TLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELG----ADDTINPKEEDVEKVRELTEGRGADLVIE 233 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC----CCEEecCccccHHHHHHHhCCCCCCEEEE
Confidence 3456888887654 455555555 6776 999998888777664321 10001111 111111233345999985
Q ss_pred cccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021 181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 213 (274)
.. .. ...+..+.++|+++|.++...
T Consensus 234 ~~-----g~---~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 234 AA-----GS---PATIEQALALARPGGKVVLVG 258 (343)
T ss_pred CC-----CC---HHHHHHHHHHhhcCCEEEEEc
Confidence 31 11 134577889999999987654
No 372
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=83.39 E-value=23 Score=28.92 Aligned_cols=68 Identities=19% Similarity=0.149 Sum_probs=43.8
Q ss_pred CCCeEEEEcCCcchhHHHhhC----CCCeEEEEeCChH-HHHHHHHHhhcCCCCcceEEEEcccCCC------------C
Q 024021 108 PKGRALVPGCGTGYDVVAMAS----PERYVVGLEISDI-AIKKAEELSSSLPNAKFVSFLKADFFTW------------C 170 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~----~~~~v~~vD~~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~------------~ 170 (274)
.+..||-.||..|..+.++++ .|+.|++.--+-+ |.+.+.+. ++.....|+.++ .
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~~--------gl~~~kLDV~~~~~V~~v~~evr~~ 77 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQF--------GLKPYKLDVSKPEEVVTVSGEVRAN 77 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHhh--------CCeeEEeccCChHHHHHHHHHHhhC
Confidence 357899999999999887765 7889998876533 33333222 245566666541 2
Q ss_pred CCCCeeEEEeccc
Q 024021 171 PTELFDLIFDYTF 183 (274)
Q Consensus 171 ~~~~~D~v~~~~~ 183 (274)
+.++.|+.+.+.-
T Consensus 78 ~~Gkld~L~NNAG 90 (289)
T KOG1209|consen 78 PDGKLDLLYNNAG 90 (289)
T ss_pred CCCceEEEEcCCC
Confidence 4566777776543
No 373
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=83.28 E-value=3.2 Score=34.53 Aligned_cols=43 Identities=16% Similarity=0.143 Sum_probs=32.7
Q ss_pred CCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHh
Q 024021 108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELS 150 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~ 150 (274)
...+++|+-||+|..+..+...+..++.-|+++..+...+..+
T Consensus 20 ~~~~~vepF~G~g~V~~~~~~~~~~vi~ND~~~~l~~~~~~~l 62 (260)
T PF02086_consen 20 KHKTYVEPFAGGGSVFLNLKQPGKRVIINDINPDLINFWKAVL 62 (260)
T ss_dssp S-SEEEETT-TTSHHHHCC---SSEEEEEES-HHHHHHHHHHH
T ss_pred CCCEEEEEecchhHHHHHhcccccceeeeechHHHHHHHHHHH
Confidence 5689999999999999999888889999999998888877444
No 374
>PRK08324 short chain dehydrogenase; Validated
Probab=83.26 E-value=16 Score=35.36 Aligned_cols=72 Identities=15% Similarity=-0.008 Sum_probs=47.6
Q ss_pred CCCeEEEEcCCcchhHH----HhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------CC
Q 024021 108 PKGRALVPGCGTGYDVV----AMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PT 172 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~----~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~ 172 (274)
++++||=.|++. ..+. .+++.|++|+.+|.++...+.+....... .++.++.+|+.+.. ..
T Consensus 421 ~gk~vLVTGasg-gIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~~ 496 (681)
T PRK08324 421 AGKVALVTGAAG-GIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALAF 496 (681)
T ss_pred CCCEEEEecCCC-HHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 346788887643 3333 34457899999999988776665544322 35888899987621 02
Q ss_pred CCeeEEEeccc
Q 024021 173 ELFDLIFDYTF 183 (274)
Q Consensus 173 ~~~D~v~~~~~ 183 (274)
+.+|+|+.+..
T Consensus 497 g~iDvvI~~AG 507 (681)
T PRK08324 497 GGVDIVVSNAG 507 (681)
T ss_pred CCCCEEEECCC
Confidence 36899987654
No 375
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=83.06 E-value=6.4 Score=36.47 Aligned_cols=95 Identities=16% Similarity=0.258 Sum_probs=59.7
Q ss_pred CCCCeEEEEcCCcchh-HHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC----------------
Q 024021 107 LPKGRALVPGCGTGYD-VVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---------------- 168 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~-~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~---------------- 168 (274)
.++.+|+=+|+|.=.. +..+++ .|+.|+++|.+++..+.++..- .+++..|..+
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lG--------a~~v~v~~~e~g~~~~gYa~~~s~~~ 233 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMG--------AEFLELDFKEEGGSGDGYAKVMSEEF 233 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC--------CeEEeccccccccccccceeecCHHH
Confidence 3568999999987533 333444 7889999999999888777631 2222222210
Q ss_pred ------CCC--CCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEE
Q 024021 169 ------WCP--TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT 211 (274)
Q Consensus 169 ------~~~--~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~ 211 (274)
... ...+|+|+....+..-+.+ .-+.+++.+.+|||+.++=
T Consensus 234 ~~~~~~~~~e~~~~~DIVI~TalipG~~aP--~Lit~emv~~MKpGsvIVD 282 (511)
T TIGR00561 234 IAAEMELFAAQAKEVDIIITTALIPGKPAP--KLITEEMVDSMKAGSVIVD 282 (511)
T ss_pred HHHHHHHHHHHhCCCCEEEECcccCCCCCC--eeehHHHHhhCCCCCEEEE
Confidence 011 2469999876644433222 2356778999999998774
No 376
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=82.98 E-value=24 Score=30.35 Aligned_cols=101 Identities=12% Similarity=-0.027 Sum_probs=57.9
Q ss_pred CeEEEEcCCc--chhHHHhhCCCCeEEEEeCChHHHHHHHHH--hhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccc
Q 024021 110 GRALVPGCGT--GYDVVAMASPERYVVGLEISDIAIKKAEEL--SSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC 185 (274)
Q Consensus 110 ~~vLDiG~G~--G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~--~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~ 185 (274)
++|+=+|+|. |.++..|++.|..|+.++-+.+.++..++. +..... ................+.||+|+..-=
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~-g~~~~~~~~~~~~~~~~~~D~viv~vK-- 79 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQ-GQASLYAIPAETADAAEPIHRLLLACK-- 79 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeC-CcceeeccCCCCcccccccCEEEEECC--
Confidence 4688888874 344566677888999999987666655432 111000 111111111111222357898884211
Q ss_pred ccChhHHHHHHHHHHhcccCCcEEEEEEccC
Q 024021 186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (274)
Q Consensus 186 ~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 216 (274)
.......++.+...+.++..++....+.
T Consensus 80 ---~~~~~~al~~l~~~l~~~t~vv~lQNGv 107 (305)
T PRK05708 80 ---AYDAEPAVASLAHRLAPGAELLLLQNGL 107 (305)
T ss_pred ---HHhHHHHHHHHHhhCCCCCEEEEEeCCC
Confidence 1234567888999999999877766544
No 377
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=82.92 E-value=19 Score=30.49 Aligned_cols=92 Identities=20% Similarity=0.183 Sum_probs=54.3
Q ss_pred eEEEEcCCc--chhHHHhhCCCCeEEEEeCChHHHHHHHHHh-------hcCCC-C--------cceEEEEcccCCCCCC
Q 024021 111 RALVPGCGT--GYDVVAMASPERYVVGLEISDIAIKKAEELS-------SSLPN-A--------KFVSFLKADFFTWCPT 172 (274)
Q Consensus 111 ~vLDiG~G~--G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~-------~~~~~-~--------~~~~~~~~d~~~~~~~ 172 (274)
+|-=+|+|. +.++..++..|.+|+++|.+++.++.++..+ ...+. . .++++ ..|.. ..
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~---~~ 80 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLD---DL 80 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHH---Hh
Confidence 566677763 3344555568889999999999987655322 11210 0 02221 22221 12
Q ss_pred CCeeEEEecccccccCh--hHHHHHHHHHHhcccCCcEEEE
Q 024021 173 ELFDLIFDYTFFCAIEP--EMRAAWAQKIKDFLKPDGELIT 211 (274)
Q Consensus 173 ~~~D~v~~~~~~~~~~~--~~~~~~l~~~~~~L~pgG~~~~ 211 (274)
...|+|+.. +++ +....++.++.+.++|+..+..
T Consensus 81 ~~aDlVi~a-----v~e~~~~k~~~~~~l~~~~~~~~il~s 116 (282)
T PRK05808 81 KDADLVIEA-----ATENMDLKKKIFAQLDEIAKPEAILAT 116 (282)
T ss_pred ccCCeeeec-----ccccHHHHHHHHHHHHhhCCCCcEEEE
Confidence 457888842 222 2335888999999999887744
No 378
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=82.85 E-value=2.5 Score=36.91 Aligned_cols=96 Identities=15% Similarity=0.182 Sum_probs=54.6
Q ss_pred CCCCeEEEEcCCc-chhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc---ccCC----CCCCCCee-
Q 024021 107 LPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA---DFFT----WCPTELFD- 176 (274)
Q Consensus 107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~---d~~~----~~~~~~~D- 176 (274)
.++.+||=.|+|. |..+..+++ .|.+++++|.+++.++.+++.-.. .-+..... |+.+ ......+|
T Consensus 165 ~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~Ga~----~~i~~~~~~~~~~~~~~~~~t~~~g~d~ 240 (349)
T TIGR03201 165 KKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGFGAD----LTLNPKDKSAREVKKLIKAFAKARGLRS 240 (349)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCc----eEecCccccHHHHHHHHHhhcccCCCCC
Confidence 4567999999854 444455555 678999999999988888653211 00111111 1111 11122354
Q ss_pred ---EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021 177 ---LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (274)
Q Consensus 177 ---~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 214 (274)
+|+. .... ...+....++|++||++++...
T Consensus 241 ~~d~v~d-----~~g~---~~~~~~~~~~l~~~G~iv~~G~ 273 (349)
T TIGR03201 241 TGWKIFE-----CSGS---KPGQESALSLLSHGGTLVVVGY 273 (349)
T ss_pred CcCEEEE-----CCCC---hHHHHHHHHHHhcCCeEEEECc
Confidence 5552 1111 1345667788999999987654
No 379
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=82.53 E-value=25 Score=28.62 Aligned_cols=73 Identities=10% Similarity=-0.041 Sum_probs=46.9
Q ss_pred CCCeEEEEcCCcchhHHH----hhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----------C
Q 024021 108 PKGRALVPGCGTGYDVVA----MASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T 172 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~----l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-----------~ 172 (274)
++.++|-.|++ |..+.. +++.|.+|+.++.++..+..+.+.....+ .++.++..|+.+... .
T Consensus 4 ~~~~~lItG~~-g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (253)
T PRK08217 4 KDKVIVITGGA-QGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALG--TEVRGYAANVTDEEDVEATFAQIAEDF 80 (253)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 45788888864 333333 34478899999998876665555443332 457888889875210 1
Q ss_pred CCeeEEEeccc
Q 024021 173 ELFDLIFDYTF 183 (274)
Q Consensus 173 ~~~D~v~~~~~ 183 (274)
+++|.|+.+..
T Consensus 81 ~~id~vi~~ag 91 (253)
T PRK08217 81 GQLNGLINNAG 91 (253)
T ss_pred CCCCEEEECCC
Confidence 45799887643
No 380
>PRK12939 short chain dehydrogenase; Provisional
Probab=82.52 E-value=18 Score=29.39 Aligned_cols=73 Identities=15% Similarity=-0.032 Sum_probs=47.3
Q ss_pred CCCeEEEEcCCcchhHHHh----hCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----------C
Q 024021 108 PKGRALVPGCGTGYDVVAM----ASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T 172 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l----~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-----------~ 172 (274)
+++++|=.|+ +|..+..+ ++.|.++++++.+++.+..........+ .++.++.+|+.+... .
T Consensus 6 ~~~~vlItGa-~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 82 (250)
T PRK12939 6 AGKRALVTGA-ARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAG--GRAHAIAADLADPASVQRFFDAAAAAL 82 (250)
T ss_pred CCCEEEEeCC-CChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 3567886665 45555444 4478899999988776665555443332 468889999986211 1
Q ss_pred CCeeEEEeccc
Q 024021 173 ELFDLIFDYTF 183 (274)
Q Consensus 173 ~~~D~v~~~~~ 183 (274)
+++|+|+.+..
T Consensus 83 ~~id~vi~~ag 93 (250)
T PRK12939 83 GGLDGLVNNAG 93 (250)
T ss_pred CCCCEEEECCC
Confidence 46898887643
No 381
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=82.49 E-value=9.4 Score=32.81 Aligned_cols=87 Identities=21% Similarity=0.104 Sum_probs=49.9
Q ss_pred CeEEEEcCCcc--hhHHHhhCCCC--eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccc
Q 024021 110 GRALVPGCGTG--YDVVAMASPER--YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC 185 (274)
Q Consensus 110 ~~vLDiG~G~G--~~~~~l~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~ 185 (274)
.+|.=||+|.= .++..+.+.|. +|+++|.+++..+.+++. +.. .. ...+..+. ....|+|+..-
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~----g~~--~~-~~~~~~~~--~~~aDvViiav--- 74 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAREL----GLG--DR-VTTSAAEA--VKGADLVILCV--- 74 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhC----CCC--ce-ecCCHHHH--hcCCCEEEECC---
Confidence 46888887762 23344555563 899999999887776542 110 11 11121111 13578888543
Q ss_pred ccChhHHHHHHHHHHhcccCCcEEE
Q 024021 186 AIEPEMRAAWAQKIKDFLKPDGELI 210 (274)
Q Consensus 186 ~~~~~~~~~~l~~~~~~L~pgG~~~ 210 (274)
+......+++.+...+++|..++
T Consensus 75 --p~~~~~~v~~~l~~~l~~~~iv~ 97 (307)
T PRK07502 75 --PVGASGAVAAEIAPHLKPGAIVT 97 (307)
T ss_pred --CHHHHHHHHHHHHhhCCCCCEEE
Confidence 33334556677777788887554
No 382
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=82.35 E-value=4.8 Score=34.91 Aligned_cols=91 Identities=16% Similarity=0.135 Sum_probs=55.5
Q ss_pred CeEEEEcC--CcchhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC----CCCCCCeeEEEec
Q 024021 110 GRALVPGC--GTGYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLIFDY 181 (274)
Q Consensus 110 ~~vLDiG~--G~G~~~~~l~~-~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~----~~~~~~~D~v~~~ 181 (274)
.+||=.|+ |.|..+..+++ .|+ +|++++-+++..+.+++.+... .-+.....++.+ .. ...+|+|+..
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~---~vi~~~~~~~~~~i~~~~-~~gvd~vid~ 231 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFD---AAINYKTDNVAERLRELC-PEGVDVYFDN 231 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCc---EEEECCCCCHHHHHHHHC-CCCceEEEEC
Confidence 68888875 56667777766 787 7999999988877776643211 101111112211 12 2469999842
Q ss_pred ccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021 182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 213 (274)
-. .. .+....++|+++|.++...
T Consensus 232 ~g-----~~----~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 232 VG-----GE----ISDTVISQMNENSHIILCG 254 (345)
T ss_pred CC-----cH----HHHHHHHHhccCCEEEEEe
Confidence 11 11 2467788999999988754
No 383
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=82.27 E-value=3.2 Score=35.27 Aligned_cols=74 Identities=9% Similarity=-0.039 Sum_probs=61.5
Q ss_pred EEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC---CCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEE
Q 024021 135 GLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT 211 (274)
Q Consensus 135 ~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~ 211 (274)
-....+...+.++++. .+|.+..+|+.+. -+.+.+|.++...+-.++++.....+..++.+-+.+|..+++
T Consensus 291 P~yl~~~~YEsir~n~------~RV~ihha~~iE~l~~k~ag~Vdr~iLlDaqdwmtd~qln~lws~isrta~~gA~Vif 364 (414)
T COG5379 291 PAYLDEGVYESIRQNL------RRVAIHHADIIELLAGKPAGNVDRYILLDAQDWMTDGQLNSLWSEISRTAEAGARVIF 364 (414)
T ss_pred ChhhchhhHHHHHhhh------hheeeecccHHHHhccCCCCCcceEEEecchhhcccchHHHHHHHHhhccCCCcEEEE
Confidence 3556677788888777 5689999999883 256789999999999999988999999999999999999887
Q ss_pred EEc
Q 024021 212 LMF 214 (274)
Q Consensus 212 ~~~ 214 (274)
-..
T Consensus 365 Rta 367 (414)
T COG5379 365 RTA 367 (414)
T ss_pred ecc
Confidence 553
No 384
>PRK05867 short chain dehydrogenase; Provisional
Probab=82.26 E-value=26 Score=28.72 Aligned_cols=75 Identities=19% Similarity=0.043 Sum_probs=48.7
Q ss_pred CCCCeEEEEcCCcchh---HHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----------C
Q 024021 107 LPKGRALVPGCGTGYD---VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T 172 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~---~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-----------~ 172 (274)
..++++|=.|++.|.- +..+++.|.+|+.++.+++.++.....+...+ .++.++.+|+.+... -
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG--GKVVPVCCDVSQHQQVTSMLDQVTAEL 84 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 3467889888765522 34445589999999998877766665554433 357788888875210 1
Q ss_pred CCeeEEEeccc
Q 024021 173 ELFDLIFDYTF 183 (274)
Q Consensus 173 ~~~D~v~~~~~ 183 (274)
++.|+++.+..
T Consensus 85 g~id~lv~~ag 95 (253)
T PRK05867 85 GGIDIAVCNAG 95 (253)
T ss_pred CCCCEEEECCC
Confidence 35777776544
No 385
>PRK06701 short chain dehydrogenase; Provisional
Probab=82.26 E-value=22 Score=30.12 Aligned_cols=105 Identities=14% Similarity=0.094 Sum_probs=58.5
Q ss_pred CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChH-HHHHHHHHhhcCCCCcceEEEEcccCCCCC-----------
Q 024021 107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDI-AIKKAEELSSSLPNAKFVSFLKADFFTWCP----------- 171 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~vD~~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~----------- 171 (274)
..++++|-.|++.|. ++..+++.|.+|+.++.++. ..+.........+ .++.++.+|+.+...
T Consensus 44 ~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~i~~~ 121 (290)
T PRK06701 44 LKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEG--VKCLLIPGDVSDEAFCKDAVEETVRE 121 (290)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 445788888865543 22344558999999887642 2333333333222 357889999876210
Q ss_pred CCCeeEEEecccccc-------cChhH-----------HHHHHHHHHhcccCCcEEEEEE
Q 024021 172 TELFDLIFDYTFFCA-------IEPEM-----------RAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 172 ~~~~D~v~~~~~~~~-------~~~~~-----------~~~~l~~~~~~L~pgG~~~~~~ 213 (274)
-..+|+++.+..... .+.+. ...+++.+.+.++++|.++...
T Consensus 122 ~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~is 181 (290)
T PRK06701 122 LGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTG 181 (290)
T ss_pred cCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 135798886543321 11111 1244455566666777766654
No 386
>PRK05854 short chain dehydrogenase; Provisional
Probab=81.96 E-value=11 Score=32.32 Aligned_cols=77 Identities=16% Similarity=0.090 Sum_probs=49.7
Q ss_pred CCCCeEEEEcCCcchh---HHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------CC
Q 024021 107 LPKGRALVPGCGTGYD---VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PT 172 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~---~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~ 172 (274)
..++++|=.|++.|.- +..|++.|++|+.+..+.+..+.+...+.......++.++.+|+.+.. ..
T Consensus 12 l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~ 91 (313)
T PRK05854 12 LSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEG 91 (313)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhC
Confidence 3457788888765532 234455899999999887766665554433211235888999997621 12
Q ss_pred CCeeEEEeccc
Q 024021 173 ELFDLIFDYTF 183 (274)
Q Consensus 173 ~~~D~v~~~~~ 183 (274)
++.|+++.+..
T Consensus 92 ~~iD~li~nAG 102 (313)
T PRK05854 92 RPIHLLINNAG 102 (313)
T ss_pred CCccEEEECCc
Confidence 46899997754
No 387
>PF06016 Reovirus_L2: Reovirus core-spike protein lambda-2 (L2); InterPro: IPR010311 This family consists of several Reovirus core-spike protein lambda-2 (L2) sequences. The reovirus L2 genome segment encodes the core spike protein lambda-2, which mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [].; GO: 0004482 mRNA (guanine-N7-)-methyltransferase activity, 0004484 mRNA guanylyltransferase activity, 0005524 ATP binding, 0006370 mRNA capping, 0019028 viral capsid; PDB: 1EJ6_A 3IYL_W 3K1Q_A.
Probab=81.91 E-value=6.2 Score=40.10 Aligned_cols=94 Identities=15% Similarity=0.156 Sum_probs=59.1
Q ss_pred CCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC--CCCCCCeeEEEeccccc
Q 024021 108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT--WCPTELFDLIFDYTFFC 185 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~D~v~~~~~~~ 185 (274)
.+.++||+|+|.=.=...+..+...|+.+|.-|-+ .....+....+|++.|... ..-..++|.+.|...++
T Consensus 822 ~~~~~lDLGTGPE~RiLsliP~~~pvtmvD~RP~a-------e~m~~w~t~T~y~~~DYl~~~~~~~~~~D~vtailSLG 894 (1289)
T PF06016_consen 822 DPDHWLDLGTGPECRILSLIPPDTPVTMVDTRPFA-------EPMNCWNTQTQYIQADYLSDAWWNGTPFDAVTAILSLG 894 (1289)
T ss_dssp CC-CEEEET--TT-CHHHCS-TTSEEEEEESS--S-------SSCCCCSTTEEEEES-TTSCCGGCC---SEEEECTCHH
T ss_pred CcceEEEccCCccceeeeccCCCCceEEEecCCcc-------cccchhhhcceeeeeccccceeEecCCCCEEEEEeeeh
Confidence 35799999888866666667788899999997752 1223344678999999987 34456799999988876
Q ss_pred cc---ChhHHHHHHHHHHhcccCCcE
Q 024021 186 AI---EPEMRAAWAQKIKDFLKPDGE 208 (274)
Q Consensus 186 ~~---~~~~~~~~l~~~~~~L~pgG~ 208 (274)
.. ..-.+...++.+.+.+++.|.
T Consensus 895 AAaA~a~~tl~~~l~~~l~~~~~~~~ 920 (1289)
T PF06016_consen 895 AAAASANVTLDAGLQQFLSQCVQANV 920 (1289)
T ss_dssp HHHHHCT--HHHHHHHHHHHHHCTT-
T ss_pred hhhhcCCCcHHHHHHHHHHHHHhCCc
Confidence 53 112456778888888888774
No 388
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=81.77 E-value=15 Score=31.59 Aligned_cols=93 Identities=15% Similarity=0.160 Sum_probs=55.6
Q ss_pred CCCCeEEEEcCCc-chhHHHhhC-CCCe-EEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-----CCCCCCeeEE
Q 024021 107 LPKGRALVPGCGT-GYDVVAMAS-PERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-----WCPTELFDLI 178 (274)
Q Consensus 107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-----~~~~~~~D~v 178 (274)
.++.+||-.|+|. |..+..+++ .|.+ +++++.+++..+.+++... ..++..+-.. ......+|++
T Consensus 158 ~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~vd~v 230 (334)
T cd08234 158 KPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGA-------TETVDPSREDPEAQKEDNPYGFDVV 230 (334)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCC-------eEEecCCCCCHHHHHHhcCCCCcEE
Confidence 3557888887642 444455555 6776 8999999888877754321 0122211111 1233568999
Q ss_pred EecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021 179 FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (274)
Q Consensus 179 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 214 (274)
+....- ...+..+.+.|+++|.++....
T Consensus 231 ~~~~~~--------~~~~~~~~~~l~~~G~~v~~g~ 258 (334)
T cd08234 231 IEATGV--------PKTLEQAIEYARRGGTVLVFGV 258 (334)
T ss_pred EECCCC--------hHHHHHHHHHHhcCCEEEEEec
Confidence 953110 1356677888999999887643
No 389
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=81.76 E-value=2.1 Score=34.77 Aligned_cols=60 Identities=17% Similarity=0.151 Sum_probs=44.7
Q ss_pred CCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024021 107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT 168 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 168 (274)
....-|.+||.|.|+.+..+.+.+. +...+|.++..+.-.+...+... .+..+..+|+..
T Consensus 49 ~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~--~~~~IHh~D~LR 109 (326)
T KOG0821|consen 49 LTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAP--GKLRIHHGDVLR 109 (326)
T ss_pred cccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCC--cceEEeccccce
Confidence 4457899999999999999998776 78889998887776666554332 356666666643
No 390
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=81.69 E-value=4 Score=35.03 Aligned_cols=94 Identities=16% Similarity=0.132 Sum_probs=56.9
Q ss_pred CCCCeEEEEc--CCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---CCCCCCeeEEEe
Q 024021 107 LPKGRALVPG--CGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPTELFDLIFD 180 (274)
Q Consensus 107 ~~~~~vLDiG--~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~D~v~~ 180 (274)
.++.+||=.| .|.|..+..+++ .|.++++++-+++..+.+++.- ...-+.....|+.+ ....+.+|+|+.
T Consensus 142 ~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~~G----a~~vi~~~~~~~~~~v~~~~~~gvd~vld 217 (329)
T cd08294 142 KAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKELG----FDAVFNYKTVSLEEALKEAAPDGIDCYFD 217 (329)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcC----CCEEEeCCCccHHHHHHHHCCCCcEEEEE
Confidence 3457888777 455666666666 7889999999998888886632 10001111112211 111246898884
Q ss_pred cccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021 181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 213 (274)
.- . ...+....++|+++|.++...
T Consensus 218 ~~--g-------~~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 218 NV--G-------GEFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred CC--C-------HHHHHHHHHhhccCCEEEEEc
Confidence 21 1 124577889999999988653
No 391
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=81.52 E-value=17 Score=31.09 Aligned_cols=113 Identities=14% Similarity=0.076 Sum_probs=64.1
Q ss_pred eEEEEcCCcc--hhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-CCCCeeEEEeccccccc
Q 024021 111 RALVPGCGTG--YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-PTELFDLIFDYTFFCAI 187 (274)
Q Consensus 111 ~vLDiG~G~G--~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~~~~~~ 187 (274)
+|-=||+|.= .++..+++.|.+|++.|.+++.++.+.+.. . .. ..+..+.. .....|+|+.. +
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g----~---~~--~~s~~~~~~~~~~~dvIi~~-----v 67 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDR----T---TG--VANLRELSQRLSAPRVVWVM-----V 67 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcC----C---cc--cCCHHHHHhhcCCCCEEEEE-----c
Confidence 4556777652 233455568889999999998877665421 0 00 01111111 11245888753 3
Q ss_pred ChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEE
Q 024021 188 EPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISI 246 (274)
Q Consensus 188 ~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 246 (274)
++.....+++.+...+++|-.+ +.. +.. ...+..+..+.+++.|...++.
T Consensus 68 p~~~~~~v~~~l~~~l~~g~iv-id~-st~-------~~~~t~~~~~~~~~~g~~~vda 117 (298)
T TIGR00872 68 PHGIVDAVLEELAPTLEKGDIV-IDG-GNS-------YYKDSLRRYKLLKEKGIHLLDC 117 (298)
T ss_pred CchHHHHHHHHHHhhCCCCCEE-EEC-CCC-------CcccHHHHHHHHHhcCCeEEec
Confidence 4445567888888888887544 322 111 1124556666777788765553
No 392
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=81.37 E-value=17 Score=30.92 Aligned_cols=95 Identities=16% Similarity=0.125 Sum_probs=54.5
Q ss_pred CeEEEEcCCc-c-hhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcC----------CC-C--------cceEEEEcccCC
Q 024021 110 GRALVPGCGT-G-YDVVAMASPERYVVGLEISDIAIKKAEELSSSL----------PN-A--------KFVSFLKADFFT 168 (274)
Q Consensus 110 ~~vLDiG~G~-G-~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~----------~~-~--------~~~~~~~~d~~~ 168 (274)
.+|.=+|+|. | .++..++..|.+|+.+|.+++.++.+++..... +. . .++.+. .|. .
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~ 81 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS-TSY-E 81 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee-CCH-H
Confidence 4577788874 2 233445568889999999999998776543221 10 0 011111 121 1
Q ss_pred CCCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEE
Q 024021 169 WCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT 211 (274)
Q Consensus 169 ~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~ 211 (274)
.-...|+|+..-. . +.+....++.++.+.++++.+++.
T Consensus 82 --~~~~aDlVieav~-e--~~~~k~~~~~~l~~~~~~~~il~S 119 (291)
T PRK06035 82 --SLSDADFIVEAVP-E--KLDLKRKVFAELERNVSPETIIAS 119 (291)
T ss_pred --HhCCCCEEEEcCc-C--cHHHHHHHHHHHHhhCCCCeEEEE
Confidence 1134688884321 1 112356788889888888876543
No 393
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=81.32 E-value=5 Score=33.64 Aligned_cols=74 Identities=19% Similarity=0.184 Sum_probs=43.3
Q ss_pred HHHhhCCC--CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccccChhHHHHHHHHHH
Q 024021 123 VVAMASPE--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIK 200 (274)
Q Consensus 123 ~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~ 200 (274)
+..|.+.| .+|+|+|.++..++.|.+.-. +.-...+ .+.. ..+|+|+.. .|......+++++.
T Consensus 2 A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~-------~~~~~~~-~~~~--~~~Dlvvla-----vP~~~~~~~l~~~~ 66 (258)
T PF02153_consen 2 ALALRKAGPDVEVYGYDRDPETLEAALELGI-------IDEASTD-IEAV--EDADLVVLA-----VPVSAIEDVLEEIA 66 (258)
T ss_dssp HHHHHHTTTTSEEEEE-SSHHHHHHHHHTTS-------SSEEESH-HHHG--GCCSEEEE------S-HHHHHHHHHHHH
T ss_pred hHHHHhCCCCeEEEEEeCCHHHHHHHHHCCC-------eeeccCC-HhHh--cCCCEEEEc-----CCHHHHHHHHHHhh
Confidence 45566655 699999999999888865531 1112222 1111 346988853 34455567777888
Q ss_pred hcccCCcEEEE
Q 024021 201 DFLKPDGELIT 211 (274)
Q Consensus 201 ~~L~pgG~~~~ 211 (274)
..+++|+.+.=
T Consensus 67 ~~~~~~~iv~D 77 (258)
T PF02153_consen 67 PYLKPGAIVTD 77 (258)
T ss_dssp CGS-TTSEEEE
T ss_pred hhcCCCcEEEE
Confidence 87777766543
No 394
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=81.25 E-value=13 Score=30.92 Aligned_cols=92 Identities=18% Similarity=0.134 Sum_probs=54.4
Q ss_pred CCCCeEEEEcCCc-chhHHHhhC-CCCe-EEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccc
Q 024021 107 LPKGRALVPGCGT-GYDVVAMAS-PERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTF 183 (274)
Q Consensus 107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~ 183 (274)
.++.+||-.|+|. |..+..+++ .|.+ +++++.+++..+.+++.-.. +.+..... .......+|+|+....
T Consensus 96 ~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~----~~~~~~~~---~~~~~~~~d~vl~~~~ 168 (277)
T cd08255 96 RLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPA----DPVAADTA---DEIGGRGADVVIEASG 168 (277)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCC----ccccccch---hhhcCCCCCEEEEccC
Confidence 4457788788754 444445554 6777 99999998888877654200 11110000 1123346898884311
Q ss_pred ccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021 184 FCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 184 ~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 213 (274)
. ...+....+.++++|.++...
T Consensus 169 ~--------~~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 169 S--------PSALETALRLLRDRGRVVLVG 190 (277)
T ss_pred C--------hHHHHHHHHHhcCCcEEEEEe
Confidence 1 124567788899999988654
No 395
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=80.87 E-value=5.6 Score=34.51 Aligned_cols=95 Identities=22% Similarity=0.190 Sum_probs=54.7
Q ss_pred CCCCeEEEEcCCc-chhHHHhhC-CCCe-EEEEeCChHHHHHHHHHhhcCCCCcceEEEEcc-------cCCCCCCCCee
Q 024021 107 LPKGRALVPGCGT-GYDVVAMAS-PERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD-------FFTWCPTELFD 176 (274)
Q Consensus 107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d-------~~~~~~~~~~D 176 (274)
.++.+||-.|+|. |..+..+++ .|.+ +++++-+++..+.+++.. .. .-+.....+ +........+|
T Consensus 161 ~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~g-~~---~vi~~~~~~~~~~~~~~~~~~~~~~~d 236 (343)
T cd05285 161 RPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKELG-AT---HTVNVRTEDTPESAEKIAELLGGKGPD 236 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcC-Cc---EEeccccccchhHHHHHHHHhCCCCCC
Confidence 4456777777653 444455555 6776 899988888777775531 10 001111111 11123345699
Q ss_pred EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021 177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 177 ~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 213 (274)
+|+....- ...+....+.|+++|.++...
T Consensus 237 ~vld~~g~--------~~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 237 VVIECTGA--------ESCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred EEEECCCC--------HHHHHHHHHHhhcCCEEEEEc
Confidence 99853221 124577888999999988654
No 396
>PRK10537 voltage-gated potassium channel; Provisional
Probab=80.74 E-value=6.8 Score=35.11 Aligned_cols=104 Identities=9% Similarity=0.004 Sum_probs=60.2
Q ss_pred CeEEEEcCCcchhHHHhh----CCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-----CCCCCeeEEEe
Q 024021 110 GRALVPGCGTGYDVVAMA----SPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-----CPTELFDLIFD 180 (274)
Q Consensus 110 ~~vLDiG~G~G~~~~~l~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~D~v~~ 180 (274)
.+++=+|+| ..+..++ +.+..++.+|.+.. + +.. ..+..++.+|..+. ..-++.+.|++
T Consensus 241 ~HvII~G~g--~lg~~v~~~L~~~g~~vvVId~d~~--~---~~~-----~~g~~vI~GD~td~e~L~~AgI~~A~aVI~ 308 (393)
T PRK10537 241 DHFIICGHS--PLAINTYLGLRQRGQAVTVIVPLGL--E---HRL-----PDDADLIPGDSSDSAVLKKAGAARARAILA 308 (393)
T ss_pred CeEEEECCC--hHHHHHHHHHHHCCCCEEEEECchh--h---hhc-----cCCCcEEEeCCCCHHHHHhcCcccCCEEEE
Confidence 567666554 4554443 46778999997521 1 111 12467899998762 12245676764
Q ss_pred cccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEE
Q 024021 181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAI 244 (274)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~ 244 (274)
. .+++.....+-...+.+.|+..++... ..++-.+.++.+|-+.+
T Consensus 309 ~-----t~dD~~Nl~ivL~ar~l~p~~kIIa~v--------------~~~~~~~~L~~~GaD~V 353 (393)
T PRK10537 309 L-----RDNDADNAFVVLAAKEMSSDVKTVAAV--------------NDSKNLEKIKRVHPDMI 353 (393)
T ss_pred c-----CCChHHHHHHHHHHHHhCCCCcEEEEE--------------CCHHHHHHHHhcCCCEE
Confidence 2 223333344455677788988888766 23344566666666543
No 397
>PRK06139 short chain dehydrogenase; Provisional
Probab=80.56 E-value=20 Score=31.20 Aligned_cols=74 Identities=15% Similarity=0.062 Sum_probs=49.4
Q ss_pred CCCeEEEEcCCcchh---HHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------CCC
Q 024021 108 PKGRALVPGCGTGYD---VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PTE 173 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~---~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~ 173 (274)
.++++|=.|++.|.- +..+++.|++|+.++.+++.++...+.+...+ .++.++.+|+.+.. ..+
T Consensus 6 ~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 83 (330)
T PRK06139 6 HGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALG--AEVLVVPTDVTDADQVKALATQAASFGG 83 (330)
T ss_pred CCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 456788777754422 23445589999999999888776666554433 35778888987621 125
Q ss_pred CeeEEEeccc
Q 024021 174 LFDLIFDYTF 183 (274)
Q Consensus 174 ~~D~v~~~~~ 183 (274)
.+|+++.+..
T Consensus 84 ~iD~lVnnAG 93 (330)
T PRK06139 84 RIDVWVNNVG 93 (330)
T ss_pred CCCEEEECCC
Confidence 6899988754
No 398
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=80.44 E-value=12 Score=32.22 Aligned_cols=94 Identities=20% Similarity=0.054 Sum_probs=55.3
Q ss_pred CCCCeEEEEcCC-cchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccc
Q 024021 107 LPKGRALVPGCG-TGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF 184 (274)
Q Consensus 107 ~~~~~vLDiG~G-~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~ 184 (274)
.++.+||-.|+| .|..+..+++ .|.++++++.+++..+.+++.... .-+.....+.... ..+.+|+++....-
T Consensus 161 ~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~----~~~~~~~~~~~~~-~~~~~d~vi~~~~~ 235 (330)
T cd08245 161 RPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLGAD----EVVDSGAELDEQA-AAGGADVILVTVVS 235 (330)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCc----EEeccCCcchHHh-ccCCCCEEEECCCc
Confidence 345688888876 5555555555 688999999999888777543210 0011000011101 12468988843210
Q ss_pred cccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021 185 CAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 213 (274)
...+..+.+.|+++|.++...
T Consensus 236 --------~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 236 --------GAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred --------HHHHHHHHHhcccCCEEEEEC
Confidence 124567788999999888764
No 399
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=80.31 E-value=19 Score=27.78 Aligned_cols=119 Identities=18% Similarity=0.097 Sum_probs=68.3
Q ss_pred CCcchhHHHhhC----CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC----CCCCeeEEEecccccccC
Q 024021 117 CGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC----PTELFDLIFDYTFFCAIE 188 (274)
Q Consensus 117 ~G~G~~~~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~D~v~~~~~~~~~~ 188 (274)
.|+|..+..+++ .+.+|+++--++...+. ..+++++.+|+.+.. .-..+|.|+....-..-
T Consensus 5 GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~----------~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~~~- 73 (183)
T PF13460_consen 5 GATGFVGRALAKQLLRRGHEVTALVRSPSKAED----------SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPPPK- 73 (183)
T ss_dssp TTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH----------CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHSTTT-
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEecCchhccc----------ccccccceeeehhhhhhhhhhhhcchhhhhhhhhcc-
Confidence 457877766654 78999999998874444 256999999998731 11368999865532211
Q ss_pred hhHHHHHHHHHHhcccCCc---EEEEEEccCCCCCCCC----------CcccCHHHHHHHHhcCCCcEEEEeec
Q 024021 189 PEMRAAWAQKIKDFLKPDG---ELITLMFPISDHVGGP----------PYKVSVSDYEEVLQPMGFQAISIVDN 249 (274)
Q Consensus 189 ~~~~~~~l~~~~~~L~pgG---~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~l~~~Gf~~~~~~~~ 249 (274)
+ ......+.+.++..| ++++...+......+. .+.....+..+.+++.|+..+-+..-
T Consensus 74 -~--~~~~~~~~~a~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ivrp~ 144 (183)
T PF13460_consen 74 -D--VDAAKNIIEAAKKAGVKRVVYLSSAGVYRDPPGLFSDEDKPIFPEYARDKREAEEALRESGLNWTIVRPG 144 (183)
T ss_dssp -H--HHHHHHHHHHHHHTTSSEEEEEEETTGTTTCTSEEEGGTCGGGHHHHHHHHHHHHHHHHSTSEEEEEEES
T ss_pred -c--ccccccccccccccccccceeeeccccCCCCCcccccccccchhhhHHHHHHHHHHHHhcCCCEEEEECc
Confidence 1 233344444443333 2444444433322221 11123456677778888866655553
No 400
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=80.12 E-value=16 Score=31.10 Aligned_cols=96 Identities=15% Similarity=0.079 Sum_probs=54.0
Q ss_pred eEEEEcCCc--chhHHHhhCCCCeEEEEeCChHHHHHHHHHhhc-------CCC-C--------cceEEEEcccCCCCCC
Q 024021 111 RALVPGCGT--GYDVVAMASPERYVVGLEISDIAIKKAEELSSS-------LPN-A--------KFVSFLKADFFTWCPT 172 (274)
Q Consensus 111 ~vLDiG~G~--G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~-------~~~-~--------~~~~~~~~d~~~~~~~ 172 (274)
+|.=||+|. +.++..+++.|.+|+.+|.+++.++.+.+.... .+. . .++++. .|..+. -
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~--~ 79 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYS-LDLKAA--V 79 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CcHHHh--h
Confidence 566777763 223344555889999999999999887754321 000 0 012211 222111 2
Q ss_pred CCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEE
Q 024021 173 ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITL 212 (274)
Q Consensus 173 ~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~ 212 (274)
...|+|+..-. . +......++.++.+.++++.++.+.
T Consensus 80 ~~aD~Vi~avp-e--~~~~k~~~~~~l~~~~~~~~il~~~ 116 (288)
T PRK09260 80 ADADLVIEAVP-E--KLELKKAVFETADAHAPAECYIATN 116 (288)
T ss_pred cCCCEEEEecc-C--CHHHHHHHHHHHHhhCCCCcEEEEc
Confidence 34688884322 1 1123456778888888887765443
No 401
>PRK07806 short chain dehydrogenase; Provisional
Probab=80.08 E-value=31 Score=28.10 Aligned_cols=103 Identities=14% Similarity=-0.022 Sum_probs=56.4
Q ss_pred CCCeEEEEcCCcchhHH----HhhCCCCeEEEEeCCh-HHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----------
Q 024021 108 PKGRALVPGCGTGYDVV----AMASPERYVVGLEISD-IAIKKAEELSSSLPNAKFVSFLKADFFTWCP----------- 171 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~----~l~~~~~~v~~vD~~~-~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~----------- 171 (274)
.++++|-.|++ |..+. .+++.|.+|+++..+. ...+.........+ .++.++.+|+.+...
T Consensus 5 ~~k~vlItGas-ggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (248)
T PRK07806 5 PGKTALVTGSS-RGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAG--GRASAVGADLTDEESVAALMDTAREE 81 (248)
T ss_pred CCcEEEEECCC-CcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 35678888864 33443 3444788998887654 23333333332222 357888899887211
Q ss_pred CCCeeEEEeccccccc---Ch--------hHHHHHHHHHHhcccCCcEEEEEE
Q 024021 172 TELFDLIFDYTFFCAI---EP--------EMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 172 ~~~~D~v~~~~~~~~~---~~--------~~~~~~l~~~~~~L~pgG~~~~~~ 213 (274)
-+..|+++.+...... +. .-...+++.+...++.+|.+++..
T Consensus 82 ~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~is 134 (248)
T PRK07806 82 FGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVT 134 (248)
T ss_pred CCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEe
Confidence 1357888765432211 00 112345666766666667666543
No 402
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=80.05 E-value=18 Score=32.63 Aligned_cols=104 Identities=13% Similarity=0.043 Sum_probs=59.9
Q ss_pred CCCCeEEEEcCCcchh-HHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccc
Q 024021 107 LPKGRALVPGCGTGYD-VVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF 184 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~-~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~ 184 (274)
..+.+|+=+|+|.=.. ....++ .|++|+++|.++.....+... + .... +..+.. ...|+|+..-.
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~----G----~~v~--~leeal--~~aDVVItaTG- 259 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMD----G----FRVM--TMEEAA--KIGDIFITATG- 259 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhc----C----CEeC--CHHHHH--hcCCEEEECCC-
Confidence 5678999999987332 233333 688999999998654444321 1 1111 121211 34699875321
Q ss_pred cccChhHHHHHHH-HHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhc
Q 024021 185 CAIEPEMRAAWAQ-KIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQP 238 (274)
Q Consensus 185 ~~~~~~~~~~~l~-~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 238 (274)
. ..++. .....+++|++++...... ..++.+.+.+.+.+
T Consensus 260 ------~-~~vI~~~~~~~mK~GailiN~G~~~--------~eId~~aL~~~~~~ 299 (406)
T TIGR00936 260 ------N-KDVIRGEHFENMKDGAIVANIGHFD--------VEIDVKALEELAVE 299 (406)
T ss_pred ------C-HHHHHHHHHhcCCCCcEEEEECCCC--------ceeCHHHHHHHHhh
Confidence 1 23333 4778899999888765321 12456666665544
No 403
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=79.97 E-value=8.8 Score=33.38 Aligned_cols=96 Identities=15% Similarity=0.020 Sum_probs=56.9
Q ss_pred CeEEEEcCCc--chhHHHhhCCCCeEEEEeCChHHHHHHHHHhhc-------CCCC-----cceEEEEcccCCCCCCCCe
Q 024021 110 GRALVPGCGT--GYDVVAMASPERYVVGLEISDIAIKKAEELSSS-------LPNA-----KFVSFLKADFFTWCPTELF 175 (274)
Q Consensus 110 ~~vLDiG~G~--G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~-------~~~~-----~~~~~~~~d~~~~~~~~~~ 175 (274)
.+|-=||+|+ ..++..++..|.+|+..|.+++.++.++..+.. .+.. .++++.. |+.+. -...
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~-~l~~a--v~~a 84 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVA-TIEAC--VADA 84 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecC-CHHHH--hcCC
Confidence 5788888884 334455567899999999999988776553321 1110 1222221 11111 1356
Q ss_pred eEEEecccccccChhHHHHHHHHHHhcccCCcEEEE
Q 024021 176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT 211 (274)
Q Consensus 176 D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~ 211 (274)
|+|+-+ +.+.+ +....++.++.+.++|+.+|..
T Consensus 85 DlViEa-vpE~l--~vK~~lf~~l~~~~~~~aIlaS 117 (321)
T PRK07066 85 DFIQES-APERE--ALKLELHERISRAAKPDAIIAS 117 (321)
T ss_pred CEEEEC-CcCCH--HHHHHHHHHHHHhCCCCeEEEE
Confidence 888853 22222 3456788999999999874443
No 404
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=79.69 E-value=5.2 Score=34.68 Aligned_cols=95 Identities=16% Similarity=0.263 Sum_probs=52.4
Q ss_pred CCCCeEEEEcCCc-chhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEccc---CCCCCCCCeeEEEe
Q 024021 107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADF---FTWCPTELFDLIFD 180 (274)
Q Consensus 107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~---~~~~~~~~~D~v~~ 180 (274)
.++.+||-.|+|. |..+..+++ .|. .+++++-+++....+++.-... -+.....++ .+....+.+|+|+.
T Consensus 162 ~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~----~~~~~~~~~~~~~~~~~~~~vd~vld 237 (341)
T cd05281 162 VSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKMGADV----VINPREEDVVEVKSVTDGTGVDVVLE 237 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCcce----eeCcccccHHHHHHHcCCCCCCEEEE
Confidence 4556777666543 344444554 677 6888877777666665432100 011111111 12233456899985
Q ss_pred cccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021 181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 213 (274)
.-. . ...+..+.+.|+++|.++...
T Consensus 238 ~~g----~----~~~~~~~~~~l~~~G~~v~~g 262 (341)
T cd05281 238 MSG----N----PKAIEQGLKALTPGGRVSILG 262 (341)
T ss_pred CCC----C----HHHHHHHHHHhccCCEEEEEc
Confidence 321 1 123567788899999987654
No 405
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=79.66 E-value=34 Score=28.34 Aligned_cols=73 Identities=8% Similarity=-0.025 Sum_probs=43.8
Q ss_pred CCCCeEEEEcCCc-chhHHH----hhCCCCeEEEEeCCh---HHHHHHHHHhhcCCCCcceEEEEcccCCCC--------
Q 024021 107 LPKGRALVPGCGT-GYDVVA----MASPERYVVGLEISD---IAIKKAEELSSSLPNAKFVSFLKADFFTWC-------- 170 (274)
Q Consensus 107 ~~~~~vLDiG~G~-G~~~~~----l~~~~~~v~~vD~~~---~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-------- 170 (274)
..++++|-.|++. +..+.. +++.|++|+.++.+. +.++...+... ..++.++.+|+.+..
T Consensus 5 ~~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~Dv~d~~~v~~~~~~ 80 (257)
T PRK08594 5 LEGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLE----GQESLLLPCDVTSDEEITACFET 80 (257)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcC----CCceEEEecCCCCHHHHHHHHHH
Confidence 3467889999762 444444 445899998886542 33333332221 145778889997621
Q ss_pred ---CCCCeeEEEeccc
Q 024021 171 ---PTELFDLIFDYTF 183 (274)
Q Consensus 171 ---~~~~~D~v~~~~~ 183 (274)
.-+++|+++.+..
T Consensus 81 ~~~~~g~ld~lv~nag 96 (257)
T PRK08594 81 IKEEVGVIHGVAHCIA 96 (257)
T ss_pred HHHhCCCccEEEECcc
Confidence 1256898886643
No 406
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=79.49 E-value=13 Score=32.24 Aligned_cols=94 Identities=16% Similarity=0.145 Sum_probs=58.2
Q ss_pred CCCCeEEEEcC--CcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc-ccCC----CCCCCCeeEE
Q 024021 107 LPKGRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA-DFFT----WCPTELFDLI 178 (274)
Q Consensus 107 ~~~~~vLDiG~--G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~-d~~~----~~~~~~~D~v 178 (274)
.++.+||=.|+ |.|..+..+++ .|.++++++.+++..+.+++..... .-+..... ++.+ .. ...+|+|
T Consensus 150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa~---~vi~~~~~~~~~~~i~~~~-~~gvd~v 225 (338)
T cd08295 150 KKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGFD---DAFNYKEEPDLDAALKRYF-PNGIDIY 225 (338)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCc---eeEEcCCcccHHHHHHHhC-CCCcEEE
Confidence 45678888885 55666666666 7889999998888888887633111 10111111 2211 22 2468999
Q ss_pred EecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021 179 FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 179 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 213 (274)
+.. .. ...+....++|+++|.++...
T Consensus 226 ~d~-----~g----~~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 226 FDN-----VG----GKMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred EEC-----CC----HHHHHHHHHHhccCcEEEEec
Confidence 842 11 134577889999999988654
No 407
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=79.41 E-value=3.3 Score=36.11 Aligned_cols=95 Identities=17% Similarity=0.127 Sum_probs=54.1
Q ss_pred CCCCeEEEEcCC-cchhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC----CCCCCCeeEEE
Q 024021 107 LPKGRALVPGCG-TGYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLIF 179 (274)
Q Consensus 107 ~~~~~vLDiG~G-~G~~~~~l~~-~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~----~~~~~~~D~v~ 179 (274)
.++.+||=.|+| .|..+..+++ .|. .++++|.+++..+.+++.- ...-+.....++.. ......+|+|+
T Consensus 165 ~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g----~~~~v~~~~~~~~~~i~~~~~~~~~d~vl 240 (351)
T cd08285 165 KLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYG----ATDIVDYKNGDVVEQILKLTGGKGVDAVI 240 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcC----CceEecCCCCCHHHHHHHHhCCCCCcEEE
Confidence 345788877764 2333344444 677 5999999988887776532 10001111111111 22234689988
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021 180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 213 (274)
....- ...+..+.++|+++|.++...
T Consensus 241 d~~g~--------~~~~~~~~~~l~~~G~~v~~g 266 (351)
T cd08285 241 IAGGG--------QDTFEQALKVLKPGGTISNVN 266 (351)
T ss_pred ECCCC--------HHHHHHHHHHhhcCCEEEEec
Confidence 42110 134677888899999988654
No 408
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=79.19 E-value=22 Score=30.33 Aligned_cols=97 Identities=12% Similarity=0.061 Sum_probs=57.9
Q ss_pred CeEEEEcCCc--chhHHHhhCCCCeEEEEeCChHHHHHHHHHhhc-------CCCC---------cceEEEEcccCCCCC
Q 024021 110 GRALVPGCGT--GYDVVAMASPERYVVGLEISDIAIKKAEELSSS-------LPNA---------KFVSFLKADFFTWCP 171 (274)
Q Consensus 110 ~~vLDiG~G~--G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~-------~~~~---------~~~~~~~~d~~~~~~ 171 (274)
.+|-=||+|+ +.++..++..|..|+.+|.+++.++.++.++.. .+.. .+++ ...|. +.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~-~~~~~-~~-- 81 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLR-FTTDL-GD-- 81 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeE-eeCCH-HH--
Confidence 4677888874 233445566899999999999999887655322 1110 1121 12222 11
Q ss_pred CCCeeEEEecccccccChhHHHHHHHHHHhcc-cCCcEEEEEE
Q 024021 172 TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFL-KPDGELITLM 213 (274)
Q Consensus 172 ~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L-~pgG~~~~~~ 213 (274)
-...|+|+-. +.+.+ +....++..+.+.+ +|+.++...+
T Consensus 82 ~~~~d~ViEa-v~E~~--~~K~~l~~~l~~~~~~~~~il~snT 121 (286)
T PRK07819 82 FADRQLVIEA-VVEDE--AVKTEIFAELDKVVTDPDAVLASNT 121 (286)
T ss_pred hCCCCEEEEe-cccCH--HHHHHHHHHHHHhhCCCCcEEEECC
Confidence 2457888843 22222 34467778888888 6777665533
No 409
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=78.82 E-value=37 Score=28.30 Aligned_cols=74 Identities=20% Similarity=0.060 Sum_probs=44.4
Q ss_pred CCCeEEEEcCCcc-hh----HHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------C
Q 024021 108 PKGRALVPGCGTG-YD----VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------P 171 (274)
Q Consensus 108 ~~~~vLDiG~G~G-~~----~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~ 171 (274)
.++++|=.|++.| .. +..+++.|++|+.++.+....+.+.+..... +.+.++.+|+.+.. .
T Consensus 5 ~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~v~~~~~~~~~~ 81 (262)
T PRK07984 5 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQL---GSDIVLPCDVAEDASIDAMFAELGKV 81 (262)
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecchhHHHHHHHHHhcc---CCceEeecCCCCHHHHHHHHHHHHhh
Confidence 3567888888652 33 4555668999988887643223333322221 23567888987621 1
Q ss_pred CCCeeEEEecccc
Q 024021 172 TELFDLIFDYTFF 184 (274)
Q Consensus 172 ~~~~D~v~~~~~~ 184 (274)
-+++|+++.+..+
T Consensus 82 ~g~iD~linnAg~ 94 (262)
T PRK07984 82 WPKFDGFVHSIGF 94 (262)
T ss_pred cCCCCEEEECCcc
Confidence 2468999987643
No 410
>PRK07063 short chain dehydrogenase; Provisional
Probab=78.19 E-value=13 Score=30.66 Aligned_cols=76 Identities=17% Similarity=0.091 Sum_probs=50.2
Q ss_pred CCCeEEEEcCCcchh---HHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------CCC
Q 024021 108 PKGRALVPGCGTGYD---VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PTE 173 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~---~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~ 173 (274)
.++++|-.|++.|.- +..+++.|++|+.++.+++..+...+.........++.++.+|+.+.. ..+
T Consensus 6 ~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 85 (260)
T PRK07063 6 AGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAFG 85 (260)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 457888888765422 234455899999999988877766665543212246888999987621 114
Q ss_pred CeeEEEeccc
Q 024021 174 LFDLIFDYTF 183 (274)
Q Consensus 174 ~~D~v~~~~~ 183 (274)
.+|+++.+..
T Consensus 86 ~id~li~~ag 95 (260)
T PRK07063 86 PLDVLVNNAG 95 (260)
T ss_pred CCcEEEECCC
Confidence 6898887654
No 411
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=78.17 E-value=1.7 Score=36.95 Aligned_cols=78 Identities=26% Similarity=0.382 Sum_probs=45.8
Q ss_pred ceEEEEcccCCCCC-----CCCeeEEEecccccc-cChhHHHHHHHHHHhcccCCcEEEEEEcc-CCCCCCCCCcccCHH
Q 024021 158 FVSFLKADFFTWCP-----TELFDLIFDYTFFCA-IEPEMRAAWAQKIKDFLKPDGELITLMFP-ISDHVGGPPYKVSVS 230 (274)
Q Consensus 158 ~~~~~~~d~~~~~~-----~~~~D~v~~~~~~~~-~~~~~~~~~l~~~~~~L~pgG~~~~~~~~-~~~~~~~~~~~~~~~ 230 (274)
+|+|+..|.....+ .+.||+|+......+ +.+ .+..+++|++.+++..-. ..+... .....-.+
T Consensus 201 kVhFLPld~~~~L~~K~ky~~~Fd~ifvs~s~vh~L~p--------~l~~~~a~~A~LvvEtaKfmvdLrK-Eq~~~F~~ 271 (289)
T PF14740_consen 201 KVHFLPLDSLEKLPHKSKYQNFFDLIFVSCSMVHFLKP--------ELFQALAPDAVLVVETAKFMVDLRK-EQLQEFVK 271 (289)
T ss_pred EEEEeCchHHHHHhhHHhhcCCCCEEEEhhhhHhhcch--------HHHHHhCCCCEEEEEcchhheeCCH-HHHHHHHH
Confidence 46666666554222 357999997655433 332 377788999999886521 000000 00011357
Q ss_pred HHHHHHhcCCCcEE
Q 024021 231 DYEEVLQPMGFQAI 244 (274)
Q Consensus 231 ~~~~~l~~~Gf~~~ 244 (274)
.+.++++.+||+-+
T Consensus 272 kv~eLA~~aG~~p~ 285 (289)
T PF14740_consen 272 KVKELAKAAGFKPV 285 (289)
T ss_pred HHHHHHHHCCCccc
Confidence 88899999999864
No 412
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=78.12 E-value=17 Score=31.44 Aligned_cols=98 Identities=18% Similarity=0.124 Sum_probs=57.9
Q ss_pred CCCCeEEEEc-CCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEE-EcccCCC---CCCCCeeEEEe
Q 024021 107 LPKGRALVPG-CGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFL-KADFFTW---CPTELFDLIFD 180 (274)
Q Consensus 107 ~~~~~vLDiG-~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~-~~d~~~~---~~~~~~D~v~~ 180 (274)
.|+.+|-=+| +|-|.++..+++ -|.+|+++|-+..--+.+-+++.... -+.+. ..|..+. .-+.-.|.|..
T Consensus 180 ~pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~---fv~~~~d~d~~~~~~~~~dg~~~~v~~ 256 (360)
T KOG0023|consen 180 GPGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADV---FVDSTEDPDIMKAIMKTTDGGIDTVSN 256 (360)
T ss_pred CCCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcce---eEEecCCHHHHHHHHHhhcCcceeeee
Confidence 3566554444 347888888887 79999999999866666655543221 11111 2222210 11223455442
Q ss_pred cccccccChhHHHHHHHHHHhcccCCcEEEEEEccCC
Q 024021 181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS 217 (274)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 217 (274)
. . ...++.+.++||++|.++++..+..
T Consensus 257 ~-a---------~~~~~~~~~~lk~~Gt~V~vg~p~~ 283 (360)
T KOG0023|consen 257 L-A---------EHALEPLLGLLKVNGTLVLVGLPEK 283 (360)
T ss_pred c-c---------ccchHHHHHHhhcCCEEEEEeCcCC
Confidence 2 1 1235778899999999998876654
No 413
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=77.67 E-value=13 Score=29.22 Aligned_cols=96 Identities=18% Similarity=0.112 Sum_probs=55.7
Q ss_pred EEEEcCCcchh--HHHhhCCCCeEEEEeCChHHHHHHHHHhhc-------CC-CC--------cceEEEEcccCCCCCCC
Q 024021 112 ALVPGCGTGYD--VVAMASPERYVVGLEISDIAIKKAEELSSS-------LP-NA--------KFVSFLKADFFTWCPTE 173 (274)
Q Consensus 112 vLDiG~G~G~~--~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~-------~~-~~--------~~~~~~~~d~~~~~~~~ 173 (274)
|.=+|+|+=+- +..++..|.+|+.+|.+++.++.+++.+.. .+ .. .++. ...|+....
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~dl~~~~--- 77 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS-FTTDLEEAV--- 77 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE-EESSGGGGC---
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc-cccCHHHHh---
Confidence 45567755322 233445899999999999999888776543 11 11 1233 233333222
Q ss_pred CeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021 174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (274)
Q Consensus 174 ~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 214 (274)
..|+|+-.- .+.+ +..+.++.++.+.+.|+.+|...+.
T Consensus 78 ~adlViEai-~E~l--~~K~~~~~~l~~~~~~~~ilasnTS 115 (180)
T PF02737_consen 78 DADLVIEAI-PEDL--ELKQELFAELDEICPPDTILASNTS 115 (180)
T ss_dssp TESEEEE-S--SSH--HHHHHHHHHHHCCS-TTSEEEE--S
T ss_pred hhheehhhc-cccH--HHHHHHHHHHHHHhCCCceEEecCC
Confidence 578888432 2222 4557899999999999998877653
No 414
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=77.60 E-value=37 Score=30.24 Aligned_cols=101 Identities=16% Similarity=0.103 Sum_probs=54.6
Q ss_pred CCCeEEEEcCCcchhH----HHhhC-----CCCeEEEEeC----ChHHHHHHHHHhhc----CCCCcceEEEEc---ccC
Q 024021 108 PKGRALVPGCGTGYDV----VAMAS-----PERYVVGLEI----SDIAIKKAEELSSS----LPNAKFVSFLKA---DFF 167 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~----~~l~~-----~~~~v~~vD~----~~~~~~~a~~~~~~----~~~~~~~~~~~~---d~~ 167 (274)
+.-+|+|+|.|.|.-- ..|+. +..++|+++. +...++.+.+++.. .++ ..+|... +..
T Consensus 110 ~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv--~fef~~v~~~~~e 187 (374)
T PF03514_consen 110 RRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGV--PFEFHPVVVESLE 187 (374)
T ss_pred cceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCc--cEEEEecccCchh
Confidence 3469999999999653 33333 2238999999 77777766665433 232 2344332 222
Q ss_pred CC------CCCCCeeEEEecccccccCh------hHHHHHHHHHHhcccCCcEEEE
Q 024021 168 TW------CPTELFDLIFDYTFFCAIEP------EMRAAWAQKIKDFLKPDGELIT 211 (274)
Q Consensus 168 ~~------~~~~~~D~v~~~~~~~~~~~------~~~~~~l~~~~~~L~pgG~~~~ 211 (274)
+. ..++.+=+|-+...++++.+ ..+..++..++ .|+|.-.+++
T Consensus 188 ~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir-~L~P~vvv~~ 242 (374)
T PF03514_consen 188 DLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIR-SLNPKVVVLV 242 (374)
T ss_pred hCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHH-hcCCCEEEEE
Confidence 11 11222223333444566631 12445665555 5899855544
No 415
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=77.53 E-value=12 Score=31.34 Aligned_cols=96 Identities=16% Similarity=0.150 Sum_probs=64.5
Q ss_pred CCCCCeEEE--EcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC----CCCCCCeeEE
Q 024021 106 ALPKGRALV--PGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLI 178 (274)
Q Consensus 106 ~~~~~~vLD--iG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~----~~~~~~~D~v 178 (274)
..++.+||- ...|.|..+.++++ .+.++++.--+.+-.+.|+++-... -+.+...|+.+ ......+|++
T Consensus 144 vkpGhtVlvhaAAGGVGlll~Ql~ra~~a~tI~~asTaeK~~~akenG~~h----~I~y~~eD~v~~V~kiTngKGVd~v 219 (336)
T KOG1197|consen 144 VKPGHTVLVHAAAGGVGLLLCQLLRAVGAHTIATASTAEKHEIAKENGAEH----PIDYSTEDYVDEVKKITNGKGVDAV 219 (336)
T ss_pred CCCCCEEEEEeccccHHHHHHHHHHhcCcEEEEEeccHHHHHHHHhcCCcc----eeeccchhHHHHHHhccCCCCceee
Confidence 345666554 34566777777777 7889999888888888888876443 25566666654 2334568998
Q ss_pred EecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021 179 FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (274)
Q Consensus 179 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 214 (274)
+.+-- .+-+..-..+||++|.++..-.
T Consensus 220 yDsvG---------~dt~~~sl~~Lk~~G~mVSfG~ 246 (336)
T KOG1197|consen 220 YDSVG---------KDTFAKSLAALKPMGKMVSFGN 246 (336)
T ss_pred ecccc---------chhhHHHHHHhccCceEEEecc
Confidence 84322 2234667788999999876543
No 416
>PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2.1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process
Probab=77.03 E-value=15 Score=25.72 Aligned_cols=70 Identities=14% Similarity=0.114 Sum_probs=44.4
Q ss_pred ccccccChhHHHHHHHHHHhcccCCcEEEEEEccCC---------------CCCCCCCcccCHHHHHHHHhcCCCcEEEE
Q 024021 182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS---------------DHVGGPPYKVSVSDYEEVLQPMGFQAISI 246 (274)
Q Consensus 182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 246 (274)
.++.|.+.++...++..+....+ |.+++..-+.+ .+.....+....+.+.+.+++.||++.+.
T Consensus 3 DvLIHYp~~d~~~~l~~La~~t~--~~~ifTfAP~T~~L~~m~~iG~lFP~~dRsp~i~~~~e~~l~~~l~~~g~~~~r~ 80 (97)
T PF07109_consen 3 DVLIHYPAEDAAQMLAHLASRTR--GSLIFTFAPRTPLLALMHAIGKLFPRPDRSPRIYPHREEDLRRALAAAGWRIGRT 80 (97)
T ss_pred ceEeccCHHHHHHHHHHHHHhcc--CcEEEEECCCCHHHHHHHHHhccCCCCCCCCcEEEeCHHHHHHHHHhCCCeeeec
Confidence 45556777777888888887554 34444321111 11112234468999999999999999888
Q ss_pred eeccccc
Q 024021 247 VDNKLAI 253 (274)
Q Consensus 247 ~~~~~~~ 253 (274)
+.....+
T Consensus 81 ~ris~gF 87 (97)
T PF07109_consen 81 ERISSGF 87 (97)
T ss_pred ccccCcC
Confidence 7765543
No 417
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=76.89 E-value=22 Score=34.60 Aligned_cols=97 Identities=16% Similarity=0.138 Sum_probs=62.5
Q ss_pred CeEEEEcCCc--chhHHHhh-CCCCeEEEEeCChHHHHHHHHHhhcC-------C-CC--------cceEEEEcccCCCC
Q 024021 110 GRALVPGCGT--GYDVVAMA-SPERYVVGLEISDIAIKKAEELSSSL-------P-NA--------KFVSFLKADFFTWC 170 (274)
Q Consensus 110 ~~vLDiG~G~--G~~~~~l~-~~~~~v~~vD~~~~~~~~a~~~~~~~-------~-~~--------~~~~~~~~d~~~~~ 170 (274)
.+|.=||+|+ ..++..++ ..|..|+.+|.+++.++.+..++... + .. .++++. .|+ +
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~-~-- 385 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-TDY-R-- 385 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe-CCh-H--
Confidence 5789999988 33444555 67999999999999998876654321 1 00 123322 122 1
Q ss_pred CCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021 171 PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 171 ~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 213 (274)
.-...|+|+-. +.+.+ +..+.++.++.+.++|+.+|...+
T Consensus 386 ~~~~aDlViEa-v~E~~--~~K~~v~~~le~~~~~~~ilasnT 425 (708)
T PRK11154 386 GFKHADVVIEA-VFEDL--ALKQQMVAEVEQNCAPHTIFASNT 425 (708)
T ss_pred HhccCCEEeec-ccccH--HHHHHHHHHHHhhCCCCcEEEECC
Confidence 12357888743 33333 445789999999999998877644
No 418
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=76.88 E-value=19 Score=35.06 Aligned_cols=97 Identities=19% Similarity=0.139 Sum_probs=62.2
Q ss_pred CeEEEEcCCc--chhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcC-------CC---------CcceEEEEcccCCCCC
Q 024021 110 GRALVPGCGT--GYDVVAMASPERYVVGLEISDIAIKKAEELSSSL-------PN---------AKFVSFLKADFFTWCP 171 (274)
Q Consensus 110 ~~vLDiG~G~--G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~-------~~---------~~~~~~~~~d~~~~~~ 171 (274)
.+|.-||+|+ ...+..++..|..|+.+|.+++.++.+..++... +. ..++++. .|+. .
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~---~ 389 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDYA---G 389 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHH---H
Confidence 4788999988 3444556678999999999999998876654221 10 0123222 2221 1
Q ss_pred CCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021 172 TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 172 ~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 213 (274)
-...|+|+-. +.+.+ +..+.++.++.+.++|+.+|...+
T Consensus 390 ~~~aDlViEa-v~E~l--~~K~~vf~~l~~~~~~~~ilasNT 428 (715)
T PRK11730 390 FERVDVVVEA-VVENP--KVKAAVLAEVEQKVREDTILASNT 428 (715)
T ss_pred hcCCCEEEec-ccCcH--HHHHHHHHHHHhhCCCCcEEEEcC
Confidence 2457888732 33333 445789999999999998776644
No 419
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=76.76 E-value=14 Score=30.34 Aligned_cols=75 Identities=16% Similarity=0.015 Sum_probs=49.2
Q ss_pred CCCCCeEEEEcCCcchhHH----HhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------
Q 024021 106 ALPKGRALVPGCGTGYDVV----AMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC----------- 170 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~----~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----------- 170 (274)
..+++++|=.|++. ..+. .+++.|++|+.++.+++.+..........+ .++.++.+|+.+..
T Consensus 8 ~~~~k~ilItGas~-~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~ 84 (256)
T PRK06124 8 SLAGQVALVTGSAR-GLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAG--GAAEALAFDIADEEAVAAAFARIDA 84 (256)
T ss_pred CCCCCEEEEECCCc-hHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHH
Confidence 34567888888644 4444 344579999999998876665555444332 45888999987621
Q ss_pred CCCCeeEEEeccc
Q 024021 171 PTELFDLIFDYTF 183 (274)
Q Consensus 171 ~~~~~D~v~~~~~ 183 (274)
..++.|.++.+..
T Consensus 85 ~~~~id~vi~~ag 97 (256)
T PRK06124 85 EHGRLDILVNNVG 97 (256)
T ss_pred hcCCCCEEEECCC
Confidence 1145788887644
No 420
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=76.65 E-value=6.1 Score=35.17 Aligned_cols=45 Identities=9% Similarity=0.005 Sum_probs=33.5
Q ss_pred CCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHh
Q 024021 106 ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELS 150 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~ 150 (274)
..++.+||-|.+|--..+.++.....+|++||+||.+....+=+.
T Consensus 33 i~~~d~vl~ItSaG~N~L~yL~~~P~~I~aVDlNp~Q~aLleLKl 77 (380)
T PF11899_consen 33 IGPDDRVLTITSAGCNALDYLLAGPKRIHAVDLNPAQNALLELKL 77 (380)
T ss_pred CCCCCeEEEEccCCchHHHHHhcCCceEEEEeCCHHHHHHHHHHH
Confidence 356689999966555555566666679999999999888776554
No 421
>CHL00194 ycf39 Ycf39; Provisional
Probab=76.60 E-value=25 Score=30.16 Aligned_cols=129 Identities=13% Similarity=-0.092 Sum_probs=64.5
Q ss_pred eEEEEcCCcchhHHHhhC----CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC----CCCCeeEEEecc
Q 024021 111 RALVPGCGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC----PTELFDLIFDYT 182 (274)
Q Consensus 111 ~vLDiG~G~G~~~~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~D~v~~~~ 182 (274)
+||=. .|+|..+..+++ .|.+|+++.-++...... .. .+++++.+|+.+.. .-..+|+|+...
T Consensus 2 kIlVt-GatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l----~~----~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~ 72 (317)
T CHL00194 2 SLLVI-GATGTLGRQIVRQALDEGYQVRCLVRNLRKASFL----KE----WGAELVYGDLSLPETLPPSFKGVTAIIDAS 72 (317)
T ss_pred EEEEE-CCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhH----hh----cCCEEEECCCCCHHHHHHHHCCCCEEEECC
Confidence 45533 568887766654 788999998775432111 11 24889999987621 113579888642
Q ss_pred cccccChhH----HHHHHHHHHhcccCCc--EEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024021 183 FFCAIEPEM----RAAWAQKIKDFLKPDG--ELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD 248 (274)
Q Consensus 183 ~~~~~~~~~----~~~~l~~~~~~L~pgG--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 248 (274)
....-+... .......+.+.++.-| +++.............++..+..+.++.++..|+..+-+..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss~~~~~~~~~~~~~~K~~~e~~l~~~~l~~tilRp 144 (317)
T CHL00194 73 TSRPSDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSILNAEQYPYIPLMKLKSDIEQKLKKSGIPYTIFRL 144 (317)
T ss_pred CCCCCCccchhhhhHHHHHHHHHHHHHcCCCEEEEeccccccccCCChHHHHHHHHHHHHHHcCCCeEEEee
Confidence 211101000 0111123333333333 34433221111111223333466777788888877655543
No 422
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=76.59 E-value=39 Score=28.66 Aligned_cols=98 Identities=14% Similarity=0.006 Sum_probs=53.3
Q ss_pred eEEEEcCCcchh--HHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccccC
Q 024021 111 RALVPGCGTGYD--VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIE 188 (274)
Q Consensus 111 ~vLDiG~G~G~~--~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~ 188 (274)
+|+=+|+|.-.. +..|++.|.+|+.++.+++.++..++...... .........-..+......+|+|+..--
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~d~vila~k----- 75 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLE-DGEITVPVLAADDPAELGPQDLVILAVK----- 75 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCccc-CCceeecccCCCChhHcCCCCEEEEecc-----
Confidence 577788765433 33445578899999997777666554311000 0111100000011111256898885322
Q ss_pred hhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021 189 PEMRAAWAQKIKDFLKPDGELITLMF 214 (274)
Q Consensus 189 ~~~~~~~l~~~~~~L~pgG~~~~~~~ 214 (274)
......+++.+...+.++..++....
T Consensus 76 ~~~~~~~~~~l~~~l~~~~~iv~~~n 101 (304)
T PRK06522 76 AYQLPAALPSLAPLLGPDTPVLFLQN 101 (304)
T ss_pred cccHHHHHHHHhhhcCCCCEEEEecC
Confidence 22345678888888888777766543
No 423
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=76.37 E-value=42 Score=27.62 Aligned_cols=72 Identities=14% Similarity=0.022 Sum_probs=44.1
Q ss_pred CCCeEEEEcCCc-chhH----HHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------C
Q 024021 108 PKGRALVPGCGT-GYDV----VAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------P 171 (274)
Q Consensus 108 ~~~~vLDiG~G~-G~~~----~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~ 171 (274)
.++++|-.|+++ +..+ ..+++.|++|+.++.+....+..++.. ..++.++.+|+.+.. .
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 80 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQKLV-----DEEDLLVECDVASDESIERAFATIKER 80 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHHhhc-----cCceeEEeCCCCCHHHHHHHHHHHHHH
Confidence 457888888763 3444 445558999998887644333222221 134778889997621 1
Q ss_pred CCCeeEEEecccc
Q 024021 172 TELFDLIFDYTFF 184 (274)
Q Consensus 172 ~~~~D~v~~~~~~ 184 (274)
-+++|+++.+..+
T Consensus 81 ~g~iD~lv~nAg~ 93 (252)
T PRK06079 81 VGKIDGIVHAIAY 93 (252)
T ss_pred hCCCCEEEEcccc
Confidence 2568999877543
No 424
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=76.23 E-value=7.3 Score=34.26 Aligned_cols=90 Identities=24% Similarity=0.313 Sum_probs=53.9
Q ss_pred CCCeEEEEcCCc-chhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc---ccC----CCCCCCCeeE
Q 024021 108 PKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA---DFF----TWCPTELFDL 177 (274)
Q Consensus 108 ~~~~vLDiG~G~-G~~~~~l~~-~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~---d~~----~~~~~~~~D~ 177 (274)
++.+||-.|+|. |..+..+++ .|. .+++++.++...+.+++.-. ..++.. ++. ... ...+|+
T Consensus 186 ~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~-------~~~i~~~~~~~~~~v~~~~-~~~~d~ 257 (365)
T cd08278 186 PGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGA-------THVINPKEEDLVAAIREIT-GGGVDY 257 (365)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCC-------cEEecCCCcCHHHHHHHHh-CCCCcE
Confidence 457787777643 444455555 677 69999999988877765321 111111 111 122 346899
Q ss_pred EEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021 178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 178 v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 213 (274)
|+..-.- ...+..+.+.++++|.++...
T Consensus 258 vld~~g~--------~~~~~~~~~~l~~~G~~v~~g 285 (365)
T cd08278 258 ALDTTGV--------PAVIEQAVDALAPRGTLALVG 285 (365)
T ss_pred EEECCCC--------cHHHHHHHHHhccCCEEEEeC
Confidence 9843210 124577888899999988754
No 425
>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=76.22 E-value=45 Score=28.90 Aligned_cols=79 Identities=16% Similarity=0.101 Sum_probs=56.8
Q ss_pred CCCCCeEEEEcCCcchh---HHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-----------CC
Q 024021 106 ALPKGRALVPGCGTGYD---VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-----------CP 171 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~---~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-----------~~ 171 (274)
...+..++=.|+.+|.- +..|+..|++|+..--+.+..+.+++.+.......++.++.+|+.++ ..
T Consensus 32 ~~~~~~~vVTGansGIG~eta~~La~~Ga~Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~fa~~~~~~ 111 (314)
T KOG1208|consen 32 DLSGKVALVTGATSGIGFETARELALRGAHVVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSSLKSVRKFAEEFKKK 111 (314)
T ss_pred cCCCcEEEEECCCCchHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCHHHHHHHHHHHHhc
Confidence 34456788888777643 45666789999999999888888888776643446788999999872 12
Q ss_pred CCCeeEEEecccc
Q 024021 172 TELFDLIFDYTFF 184 (274)
Q Consensus 172 ~~~~D~v~~~~~~ 184 (274)
..+.|+.+.+.-+
T Consensus 112 ~~~ldvLInNAGV 124 (314)
T KOG1208|consen 112 EGPLDVLINNAGV 124 (314)
T ss_pred CCCccEEEeCccc
Confidence 3568888877544
No 426
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=75.70 E-value=11 Score=32.56 Aligned_cols=96 Identities=15% Similarity=0.161 Sum_probs=61.4
Q ss_pred CCeEEEEcCCc-chhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCCeeEEEeccccc
Q 024021 109 KGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTFFC 185 (274)
Q Consensus 109 ~~~vLDiG~G~-G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~~~ 185 (274)
+.+|.=+|.|. |..+..++- .|+.|+.+|+|...+......+. .+++..-.+..+. ..-.+.|+++..-.+.
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~-----~rv~~~~st~~~iee~v~~aDlvIgaVLIp 242 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFG-----GRVHTLYSTPSNIEEAVKKADLVIGAVLIP 242 (371)
T ss_pred CccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhC-----ceeEEEEcCHHHHHHHhhhccEEEEEEEec
Confidence 46777787775 455555544 78899999999887766655542 3455555544431 2224689988543332
Q ss_pred ccChhHHHHHHHHHHhcccCCcEEEE
Q 024021 186 AIEPEMRAAWAQKIKDFLKPDGELIT 211 (274)
Q Consensus 186 ~~~~~~~~~~l~~~~~~L~pgG~~~~ 211 (274)
.-. ...-+.+++.+.++||+.++=
T Consensus 243 gak--aPkLvt~e~vk~MkpGsVivD 266 (371)
T COG0686 243 GAK--APKLVTREMVKQMKPGSVIVD 266 (371)
T ss_pred CCC--CceehhHHHHHhcCCCcEEEE
Confidence 221 223466888999999998874
No 427
>COG4121 Uncharacterized conserved protein [Function unknown]
Probab=75.37 E-value=10 Score=31.70 Aligned_cols=124 Identities=19% Similarity=0.155 Sum_probs=80.0
Q ss_pred CCeEEEEcCCcchhHHHhhC-----C------C---CeEEEEeCChHHHHHH-------------HHHhhcCC-------
Q 024021 109 KGRALVPGCGTGYDVVAMAS-----P------E---RYVVGLEISDIAIKKA-------------EELSSSLP------- 154 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l~~-----~------~---~~v~~vD~~~~~~~~a-------------~~~~~~~~------- 154 (274)
...|+|+|-|+|.+...+-+ . + ..+++++.+|...... ....+...
T Consensus 59 ~~~i~E~gfgtglnfl~~~~~~~~~~~~~~~~~~~~l~~~S~e~~P~~~~~l~~l~~~pel~~~~~~l~~~~~~~~~~~~ 138 (252)
T COG4121 59 ILQILEIGFGTGLNFLTAHLAIGDARQAKLEVVLLDLKFDSIELDPFSPPKCPALWTVPFLCHLADALAPTGPLATYGCA 138 (252)
T ss_pred ceeehhhhcccchhHHHHHhhhhhhhhccccccccccceEEEEeCCCChhhhHHHhhhhhHHHHHHHHhhccCcccchhH
Confidence 35899999999988765543 1 1 2577888765332221 11111110
Q ss_pred -----CCcceEEEEcccCCCCC--CC---CeeEEEecccccccChhHH-HHHHHHHHhcccCCcEEEEEEccCCCCCCCC
Q 024021 155 -----NAKFVSFLKADFFTWCP--TE---LFDLIFDYTFFCAIEPEMR-AAWAQKIKDFLKPDGELITLMFPISDHVGGP 223 (274)
Q Consensus 155 -----~~~~~~~~~~d~~~~~~--~~---~~D~v~~~~~~~~~~~~~~-~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~ 223 (274)
.....+...+|+.+..+ +. .+|+++..+.-...+++++ ..++..+++..++||.+....
T Consensus 139 r~~~~g~~~l~l~~gd~~~~~p~~~~~~~~~dAwflDgFsP~kNP~mW~~e~l~~~a~~~~~~~~l~t~s---------- 208 (252)
T COG4121 139 AAVRHGLLLLGLVIGDAGDGIPPVPRRRPGTDAWFLDGFRPVKNPEMWEDELLNLMARIPYRDPTLATFA---------- 208 (252)
T ss_pred HhhhcchheeeeeeeehhhcCCcccccccCccEEecCCccccCChhhccHHHHHHHHhhcCCCCceechH----------
Confidence 12346777788876222 22 6899887655444444332 578899999999999986644
Q ss_pred CcccCHHHHHHHHhcCCCcEEEE
Q 024021 224 PYKVSVSDYEEVLQPMGFQAISI 246 (274)
Q Consensus 224 ~~~~~~~~~~~~l~~~Gf~~~~~ 246 (274)
+..-++.-++.+||++.+.
T Consensus 209 ----sA~~vRr~L~~aGF~v~~r 227 (252)
T COG4121 209 ----AAIAVRRRLEQAGFTVEKR 227 (252)
T ss_pred ----HHHHHHHHHHHcCceeeec
Confidence 5667888999999999876
No 428
>PRK07985 oxidoreductase; Provisional
Probab=75.33 E-value=50 Score=28.00 Aligned_cols=105 Identities=16% Similarity=0.071 Sum_probs=58.2
Q ss_pred CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCCh--HHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------
Q 024021 107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISD--IAIKKAEELSSSLPNAKFVSFLKADFFTWC----------- 170 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~vD~~~--~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----------- 170 (274)
..++++|-.|++.|. .+..|++.|++|+.++.+. ...+.........+ .++.++.+|+.+..
T Consensus 47 ~~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~ 124 (294)
T PRK07985 47 LKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECG--RKAVLLPGDLSDEKFARSLVHEAHK 124 (294)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcC--CeEEEEEccCCCHHHHHHHHHHHHH
Confidence 345788988865442 2344455899988876542 33333333333322 35778889987621
Q ss_pred CCCCeeEEEeccccc-------ccChhHH-----------HHHHHHHHhcccCCcEEEEEE
Q 024021 171 PTELFDLIFDYTFFC-------AIEPEMR-----------AAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 171 ~~~~~D~v~~~~~~~-------~~~~~~~-----------~~~l~~~~~~L~pgG~~~~~~ 213 (274)
.-+..|+++.+.... ..+.+.+ -.+++.+...++.+|.++...
T Consensus 125 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iS 185 (294)
T PRK07985 125 ALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTS 185 (294)
T ss_pred HhCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEEC
Confidence 124679888764321 1222222 134455666666778766644
No 429
>KOG4174 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.27 E-value=24 Score=29.43 Aligned_cols=132 Identities=14% Similarity=0.098 Sum_probs=77.1
Q ss_pred CeEEEEcCCcchhHHHhhC-CC---CeEEEEeCChHHHHH------HHHHhhcCCCCcceEEEEcccCC-----CCCCCC
Q 024021 110 GRALVPGCGTGYDVVAMAS-PE---RYVVGLEISDIAIKK------AEELSSSLPNAKFVSFLKADFFT-----WCPTEL 174 (274)
Q Consensus 110 ~~vLDiG~G~G~~~~~l~~-~~---~~v~~vD~~~~~~~~------a~~~~~~~~~~~~~~~~~~d~~~-----~~~~~~ 174 (274)
.+||.+|=|.=.++..++. -| ..+++..++..-.+. ++.++.....-+..-+...|+.. ....++
T Consensus 58 ~~ill~gEgdFSfs~sl~~~~g~sa~ni~atSlDsk~~dl~~KY~~~~~nv~~Lk~lG~~I~h~Vdv~sl~~~~~~~~~~ 137 (282)
T KOG4174|consen 58 QKILLVGEGDFSFSLSLAPHFGRSAGNITATSLDSKEFDLKQKYPDAKENVEALKRLGGTILHGVDVTSLKFHADLRLQR 137 (282)
T ss_pred ccEEEecccchhhHHHHHHHhCccccceeeeeccchhhhhhhcccchHHHHHHHHHcCCceEecccceeEEecccccccc
Confidence 5899988777777777766 22 256665554433222 22222211000112223335544 123467
Q ss_pred eeEEEeccccccc-------------ChhHHHHHHHHHHhccc-CCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCC
Q 024021 175 FDLIFDYTFFCAI-------------EPEMRAAWAQKIKDFLK-PDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMG 240 (274)
Q Consensus 175 ~D~v~~~~~~~~~-------------~~~~~~~~l~~~~~~L~-pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 240 (274)
||-||.+.+.... ..+....+++.+...|+ ..|.|.+..... +.+++-.+..+.++.|
T Consensus 138 ~d~IiFNFPH~G~g~~~e~d~~~i~~~qkL~rgFle~akemL~~edGeI~itlk~t--------~P~~~W~ik~Lak~~g 209 (282)
T KOG4174|consen 138 YDNIIFNFPHSGKGIKFEQDRNIIPLHQKLFRGFLESAKEMLKDEDGEIHITLKTT--------YPFNPWNIKFLAKEFG 209 (282)
T ss_pred cceEEEcCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccC--------CCCchhhhhHhhhhcc
Confidence 9999987554332 12345678889999999 789888875322 2346678888888989
Q ss_pred CcEEEEeec
Q 024021 241 FQAISIVDN 249 (274)
Q Consensus 241 f~~~~~~~~ 249 (274)
++.......
T Consensus 210 l~L~~~skF 218 (282)
T KOG4174|consen 210 LTLLEDSKF 218 (282)
T ss_pred ccchhcccc
Confidence 888766443
No 430
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=75.16 E-value=19 Score=33.15 Aligned_cols=119 Identities=7% Similarity=-0.109 Sum_probs=65.7
Q ss_pred EEEEcCCcc--hhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-CCCeeEEEecccccccC
Q 024021 112 ALVPGCGTG--YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-TELFDLIFDYTFFCAIE 188 (274)
Q Consensus 112 vLDiG~G~G--~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~~~~~~ 188 (274)
|-=||.|.- .++..|++.|.+|++.|.+++.++...+.....+. ++. ...+..+... ....|+|+..- .+
T Consensus 4 IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~--~i~-~~~s~~e~v~~l~~~d~Iil~v----~~ 76 (470)
T PTZ00142 4 IGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNT--RVK-GYHTLEELVNSLKKPRKVILLI----KA 76 (470)
T ss_pred EEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCC--cce-ecCCHHHHHhcCCCCCEEEEEe----CC
Confidence 444555532 33345556889999999999988877654322221 111 1122222111 12357666421 23
Q ss_pred hhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEE
Q 024021 189 PEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISI 246 (274)
Q Consensus 189 ~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 246 (274)
......+++.+...|++|-+++-.. . ....+..+..+.++++|...++.
T Consensus 77 ~~~v~~vi~~l~~~L~~g~iIID~g--n-------~~~~dt~~r~~~l~~~Gi~flda 125 (470)
T PTZ00142 77 GEAVDETIDNLLPLLEKGDIIIDGG--N-------EWYLNTERRIKRCEEKGILYLGM 125 (470)
T ss_pred hHHHHHHHHHHHhhCCCCCEEEECC--C-------CCHHHHHHHHHHHHHcCCeEEcC
Confidence 3456778888999998886553322 1 11224455567777778766553
No 431
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=75.10 E-value=4.9 Score=35.02 Aligned_cols=96 Identities=23% Similarity=0.236 Sum_probs=53.9
Q ss_pred CCCCeEEEEcCC-cchhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccC----CCCCCCCeeEEE
Q 024021 107 LPKGRALVPGCG-TGYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFF----TWCPTELFDLIF 179 (274)
Q Consensus 107 ~~~~~vLDiG~G-~G~~~~~l~~-~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~----~~~~~~~~D~v~ 179 (274)
.++.+||=.|+| .|..+..+++ .|. .|++++.+++..+.+++.- ...-+.....++. +....+.+|+|+
T Consensus 171 ~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~g----a~~~i~~~~~~~~~~l~~~~~~~~~d~vi 246 (351)
T cd08233 171 KPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEELG----ATIVLDPTEVDVVAEVRKLTGGGGVDVSF 246 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhC----CCEEECCCccCHHHHHHHHhCCCCCCEEE
Confidence 345677777653 2223334444 687 8999999988888775531 1000111111211 122234599998
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021 180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (274)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 214 (274)
..... ...++.+.+.|+++|.++....
T Consensus 247 d~~g~--------~~~~~~~~~~l~~~G~~v~~g~ 273 (351)
T cd08233 247 DCAGV--------QATLDTAIDALRPRGTAVNVAI 273 (351)
T ss_pred ECCCC--------HHHHHHHHHhccCCCEEEEEcc
Confidence 53211 1245778889999999887543
No 432
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=74.43 E-value=9.4 Score=33.05 Aligned_cols=96 Identities=19% Similarity=0.273 Sum_probs=53.4
Q ss_pred CCCCeEEEEcCC-cchhHHHhhC-CCCe-EEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC----CCCCCCeeEEE
Q 024021 107 LPKGRALVPGCG-TGYDVVAMAS-PERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLIF 179 (274)
Q Consensus 107 ~~~~~vLDiG~G-~G~~~~~l~~-~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~----~~~~~~~D~v~ 179 (274)
.++.+||-.|+| .|..+..+++ .|.+ |++++-+++..+.+++... ..-+.....++.+ ......+|+|+
T Consensus 160 ~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~g~----~~~v~~~~~~~~~~l~~~~~~~~~d~vl 235 (340)
T TIGR00692 160 ISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKMGA----TYVVNPFKEDVVKEVADLTDGEGVDVFL 235 (340)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCC----cEEEcccccCHHHHHHHhcCCCCCCEEE
Confidence 345666666653 2334444444 6775 8888888877776655421 0001111112211 22335689998
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021 180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (274)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 214 (274)
.... . ...+..+.+.|+++|.++....
T Consensus 236 d~~g----~----~~~~~~~~~~l~~~g~~v~~g~ 262 (340)
T TIGR00692 236 EMSG----A----PKALEQGLQAVTPGGRVSLLGL 262 (340)
T ss_pred ECCC----C----HHHHHHHHHhhcCCCEEEEEcc
Confidence 5311 1 1346778889999999877643
No 433
>PRK06172 short chain dehydrogenase; Provisional
Probab=74.36 E-value=18 Score=29.63 Aligned_cols=74 Identities=19% Similarity=0.071 Sum_probs=49.3
Q ss_pred CCCCeEEEEcCCcchhHH----HhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----------
Q 024021 107 LPKGRALVPGCGTGYDVV----AMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP----------- 171 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~----~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~----------- 171 (274)
..++++|=.|++.| .+. .+++.|++|+.++.+++.++.........+ .++.++.+|+.+...
T Consensus 5 l~~k~ilItGas~~-iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~ 81 (253)
T PRK06172 5 FSGKVALVTGGAAG-IGRATALAFAREGAKVVVADRDAAGGEETVALIREAG--GEALFVACDVTRDAEVKALVEQTIAA 81 (253)
T ss_pred CCCCEEEEeCCCch-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 34578888887544 333 444578999999998877666655544332 468889999976210
Q ss_pred CCCeeEEEeccc
Q 024021 172 TELFDLIFDYTF 183 (274)
Q Consensus 172 ~~~~D~v~~~~~ 183 (274)
.+++|+++.+..
T Consensus 82 ~g~id~li~~ag 93 (253)
T PRK06172 82 YGRLDYAFNNAG 93 (253)
T ss_pred hCCCCEEEECCC
Confidence 136799987654
No 434
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=74.34 E-value=2.7 Score=39.35 Aligned_cols=96 Identities=16% Similarity=0.100 Sum_probs=59.0
Q ss_pred CCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---------CCCCCCe
Q 024021 108 PKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---------WCPTELF 175 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~---------~~~~~~~ 175 (274)
++..|||+||..|.|+...++ .|.-|+|+|+-|- .. .+++.-++.|++. ....-+.
T Consensus 44 ~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pi---------kp---~~~c~t~v~dIttd~cr~~l~k~l~t~~a 111 (780)
T KOG1098|consen 44 KAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPI---------KP---IPNCDTLVEDITTDECRSKLRKILKTWKA 111 (780)
T ss_pred ccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeec---------cc---CCccchhhhhhhHHHHHHHHHHHHHhCCC
Confidence 457899999999999987776 5668999999663 11 1345555555543 1122356
Q ss_pred eEEEecccccc---c-Ch-----hHHHHHHHHHHhcccCCcEEEEEEcc
Q 024021 176 DLIFDYTFFCA---I-EP-----EMRAAWAQKIKDFLKPDGELITLMFP 215 (274)
Q Consensus 176 D~v~~~~~~~~---~-~~-----~~~~~~l~~~~~~L~pgG~~~~~~~~ 215 (274)
|+|+..++... + .+ ...-..+......|+.||.++.-.+.
T Consensus 112 dvVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvtkvfr 160 (780)
T KOG1098|consen 112 DVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVTKVFR 160 (780)
T ss_pred cEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCcccccccc
Confidence 88886543211 1 11 11224456667788889987664443
No 435
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=74.31 E-value=22 Score=30.15 Aligned_cols=96 Identities=20% Similarity=0.187 Sum_probs=55.0
Q ss_pred CeEEEEcCCcchhH--HHhhCCCCeEEEEeCChHHHHHHHHHhhcC--------CCC---------cceEEEEcccCCCC
Q 024021 110 GRALVPGCGTGYDV--VAMASPERYVVGLEISDIAIKKAEELSSSL--------PNA---------KFVSFLKADFFTWC 170 (274)
Q Consensus 110 ~~vLDiG~G~G~~~--~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~--------~~~---------~~~~~~~~d~~~~~ 170 (274)
.+|.=+|+|.=... ..++..|.+|+.+|.+++.++.+++..... ... .++++ ..|+.+..
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~~~a~ 82 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDLAEAV 82 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCHHHHh
Confidence 36777888753333 344557889999999999988887653210 000 12221 22222111
Q ss_pred CCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEE
Q 024021 171 PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT 211 (274)
Q Consensus 171 ~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~ 211 (274)
...|+|+..-. .. .+....+++++...++++.++..
T Consensus 83 --~~aDlVieavp-e~--~~~k~~~~~~l~~~~~~~~ii~s 118 (287)
T PRK08293 83 --KDADLVIEAVP-ED--PEIKGDFYEELAKVAPEKTIFAT 118 (287)
T ss_pred --cCCCEEEEecc-CC--HHHHHHHHHHHHhhCCCCCEEEE
Confidence 34688885322 11 13456778888888877765543
No 436
>PRK06940 short chain dehydrogenase; Provisional
Probab=74.29 E-value=51 Score=27.59 Aligned_cols=70 Identities=14% Similarity=-0.023 Sum_probs=44.2
Q ss_pred eEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC----------CCCCeeE
Q 024021 111 RALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC----------PTELFDL 177 (274)
Q Consensus 111 ~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----------~~~~~D~ 177 (274)
.+|=-|+ |..+..+++ .|.+|+.++.++..++...+.....+ .++.++.+|+.+.. ..+.+|+
T Consensus 4 ~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~ 79 (275)
T PRK06940 4 VVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAG--FDVSTQEVDVSSRESVKALAATAQTLGPVTG 79 (275)
T ss_pred EEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHhcCCCCE
Confidence 4454554 456555543 68899999998776655554443322 35788889987621 1146899
Q ss_pred EEecccc
Q 024021 178 IFDYTFF 184 (274)
Q Consensus 178 v~~~~~~ 184 (274)
++.+..+
T Consensus 80 li~nAG~ 86 (275)
T PRK06940 80 LVHTAGV 86 (275)
T ss_pred EEECCCc
Confidence 9877654
No 437
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=74.16 E-value=63 Score=28.92 Aligned_cols=38 Identities=18% Similarity=0.269 Sum_probs=24.7
Q ss_pred EEEEcCC-cchhHHHhhCCCCeEEEEeCChHHHHHHHHH
Q 024021 112 ALVPGCG-TGYDVVAMASPERYVVGLEISDIAIKKAEEL 149 (274)
Q Consensus 112 vLDiG~G-~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~ 149 (274)
|-=+|.| -|..+..+...|..|+++|.+++.++..++.
T Consensus 3 I~VIGlGyvGl~~A~~lA~G~~VigvD~d~~kv~~l~~g 41 (388)
T PRK15057 3 ITISGTGYVGLSNGLLIAQNHEVVALDILPSRVAMLNDR 41 (388)
T ss_pred EEEECCCHHHHHHHHHHHhCCcEEEEECCHHHHHHHHcC
Confidence 4445555 2322222222588999999999999888763
No 438
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=74.09 E-value=13 Score=32.41 Aligned_cols=96 Identities=16% Similarity=0.151 Sum_probs=53.0
Q ss_pred CCCCeEEEEcCCc-chhHHHhhC-CCCe-EEEEeCChHHHHHHHHHhhcCCCCcceEEEEcc---cCCCCCCCCee-EEE
Q 024021 107 LPKGRALVPGCGT-GYDVVAMAS-PERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD---FFTWCPTELFD-LIF 179 (274)
Q Consensus 107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d---~~~~~~~~~~D-~v~ 179 (274)
.++.+||=.|+|. |..+..+++ .|.+ +++++.+++..+.+++.-... -+.....+ +.+......+| +|+
T Consensus 159 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga~~----~i~~~~~~~~~~~~~~~~~~~d~~v~ 234 (347)
T PRK10309 159 CEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQ----TFNSREMSAPQIQSVLRELRFDQLIL 234 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCce----EecCcccCHHHHHHHhcCCCCCeEEE
Confidence 3567888887643 222334444 6775 789999998888775432100 01111111 11122233577 665
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021 180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (274)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 214 (274)
. .... ...+....++|++||.+++...
T Consensus 235 d-----~~G~---~~~~~~~~~~l~~~G~iv~~G~ 261 (347)
T PRK10309 235 E-----TAGV---PQTVELAIEIAGPRAQLALVGT 261 (347)
T ss_pred E-----CCCC---HHHHHHHHHHhhcCCEEEEEcc
Confidence 3 1211 2356778899999999887653
No 439
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=73.71 E-value=19 Score=29.58 Aligned_cols=75 Identities=19% Similarity=0.041 Sum_probs=49.5
Q ss_pred CCCCeEEEEcCCcchhHHHh----hCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------C
Q 024021 107 LPKGRALVPGCGTGYDVVAM----ASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------P 171 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l----~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~ 171 (274)
..++++|=.|+ +|..+..+ ++.|++|+.++.++...+.....+...+ .++.++.+|+.+.. .
T Consensus 8 ~~~k~vlItGa-~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 84 (255)
T PRK07523 8 LTGRRALVTGS-SQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQG--LSAHALAFDVTDHDAVRAAIDAFEAE 84 (255)
T ss_pred CCCCEEEEECC-cchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--ceEEEEEccCCCHHHHHHHHHHHHHh
Confidence 45678888885 45555444 4479999999998877666555554332 35788888987621 1
Q ss_pred CCCeeEEEecccc
Q 024021 172 TELFDLIFDYTFF 184 (274)
Q Consensus 172 ~~~~D~v~~~~~~ 184 (274)
.+..|+++.+...
T Consensus 85 ~~~~d~li~~ag~ 97 (255)
T PRK07523 85 IGPIDILVNNAGM 97 (255)
T ss_pred cCCCCEEEECCCC
Confidence 1357988876543
No 440
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=73.28 E-value=11 Score=33.47 Aligned_cols=100 Identities=13% Similarity=0.165 Sum_probs=52.1
Q ss_pred CCCeEEEEcCCc-chhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCCeeEEEecccc
Q 024021 108 PKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTFF 184 (274)
Q Consensus 108 ~~~~vLDiG~G~-G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~~ 184 (274)
++.+|+=+|+|. |..+...+. .|++|+.+|.+++..+.+...... .+.....+.... ..-..+|+|+..-.+
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~-----~v~~~~~~~~~l~~~l~~aDvVI~a~~~ 240 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGG-----RIHTRYSNAYEIEDAVKRADLLIGAVLI 240 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCc-----eeEeccCCHHHHHHHHccCCEEEEcccc
Confidence 456799998873 333333333 688999999998876665544311 111111111100 001358999965322
Q ss_pred cccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021 185 CAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (274)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 214 (274)
..-..+ .-+.+.+.+.++||+.++-+..
T Consensus 241 ~g~~~p--~lit~~~l~~mk~g~vIvDva~ 268 (370)
T TIGR00518 241 PGAKAP--KLVSNSLVAQMKPGAVIVDVAI 268 (370)
T ss_pred CCCCCC--cCcCHHHHhcCCCCCEEEEEec
Confidence 111001 0122455566899988775443
No 441
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=73.07 E-value=32 Score=29.44 Aligned_cols=111 Identities=15% Similarity=0.146 Sum_probs=59.7
Q ss_pred EEEEcCCc--chhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-CCCCeeEEEecccccccC
Q 024021 112 ALVPGCGT--GYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-PTELFDLIFDYTFFCAIE 188 (274)
Q Consensus 112 vLDiG~G~--G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~~~~~~~ 188 (274)
|-=||+|. ...+..+++.|..|++.|.+++..+.+++. + ... ..+..+.. .....|+|+.. ++
T Consensus 3 Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~----g----~~~-~~s~~~~~~~~~~advVi~~-----vp 68 (299)
T PRK12490 3 LGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKL----G----ITA-RHSLEELVSKLEAPRTIWVM-----VP 68 (299)
T ss_pred EEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHC----C----Cee-cCCHHHHHHhCCCCCEEEEE-----ec
Confidence 44466553 223344455788999999998776665431 1 111 11221111 11124777643 23
Q ss_pred h-hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEE
Q 024021 189 P-EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAIS 245 (274)
Q Consensus 189 ~-~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 245 (274)
+ +....+++.+...+++|..++-.. +. ...+..++.+.+++.|...++
T Consensus 69 ~~~~~~~v~~~i~~~l~~g~ivid~s-t~--------~~~~~~~~~~~~~~~g~~~vd 117 (299)
T PRK12490 69 AGEVTESVIKDLYPLLSPGDIVVDGG-NS--------RYKDDLRRAEELAERGIHYVD 117 (299)
T ss_pred CchHHHHHHHHHhccCCCCCEEEECC-CC--------CchhHHHHHHHHHHcCCeEEe
Confidence 2 255667777877787776443321 11 112466777888888865544
No 442
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=72.86 E-value=21 Score=32.25 Aligned_cols=114 Identities=18% Similarity=0.060 Sum_probs=60.6
Q ss_pred CeEEEEcCCcchhH--HHhhCCCCeEEEEeCChHHHHHHHHHhhcC---CC---------CcceEEEEcccCCCCCCCCe
Q 024021 110 GRALVPGCGTGYDV--VAMASPERYVVGLEISDIAIKKAEELSSSL---PN---------AKFVSFLKADFFTWCPTELF 175 (274)
Q Consensus 110 ~~vLDiG~G~G~~~--~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~---~~---------~~~~~~~~~d~~~~~~~~~~ 175 (274)
.+|.=+|.|.-... ..|++.|.+|+++|.+++.++..+...... ++ ..+..+. .+ ....
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~-~~------~~~a 76 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRAT-TT------PEPA 76 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeee-cc------cccC
Confidence 45777777754443 345568999999999999887643211000 00 0111111 11 1246
Q ss_pred eEEEeccccc-----ccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcC
Q 024021 176 DLIFDYTFFC-----AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPM 239 (274)
Q Consensus 176 D~v~~~~~~~-----~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 239 (274)
|+|+..-.-. ..+-.....+++.+...+++|..++...-.. . -+.+++...+.+.
T Consensus 77 Dvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~--------p-gtt~~~~~~l~~~ 136 (415)
T PRK11064 77 DAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSP--------V-GATEQMAEWLAEA 136 (415)
T ss_pred CEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCC--------C-CHHHHHHHHHHHh
Confidence 8777542211 0111455667788889898877655533111 1 1456666656553
No 443
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=72.82 E-value=25 Score=29.95 Aligned_cols=121 Identities=13% Similarity=0.057 Sum_probs=61.1
Q ss_pred CCCCeEEEEcCCcchhHHH----hhCCCC-eEEEEeCChHHHHHHHH---HhhcCCCCcceEEEEcccCCCC----CCCC
Q 024021 107 LPKGRALVPGCGTGYDVVA----MASPER-YVVGLEISDIAIKKAEE---LSSSLPNAKFVSFLKADFFTWC----PTEL 174 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~----l~~~~~-~v~~vD~~~~~~~~a~~---~~~~~~~~~~~~~~~~d~~~~~----~~~~ 174 (274)
..++++|=+|+| | .+.. ++..|+ +|+.++.+++..+.+++ .+...+ ..+.+...|+.+.. .-..
T Consensus 124 ~~~k~vlI~GAG-G-agrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~--~~~~~~~~d~~~~~~~~~~~~~ 199 (289)
T PRK12548 124 VKGKKLTVIGAG-G-AATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEV--PECIVNVYDLNDTEKLKAEIAS 199 (289)
T ss_pred cCCCEEEEECCc-H-HHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcC--CCceeEEechhhhhHHHhhhcc
Confidence 345788989886 4 3333 334777 49999988632222322 222211 22344445554311 1135
Q ss_pred eeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEE
Q 024021 175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAI 244 (274)
Q Consensus 175 ~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~ 244 (274)
+|+|+..-.+...+.... ..+. -...|.++..++=..|.+ ....+.+..++.|+..+
T Consensus 200 ~DilINaTp~Gm~~~~~~-~~~~-~~~~l~~~~~v~D~vY~P-----------~~T~ll~~A~~~G~~~~ 256 (289)
T PRK12548 200 SDILVNATLVGMKPNDGE-TNIK-DTSVFRKDLVVADTVYNP-----------KKTKLLEDAEAAGCKTV 256 (289)
T ss_pred CCEEEEeCCCCCCCCCCC-CCCC-cHHhcCCCCEEEEecCCC-----------CCCHHHHHHHHCCCeee
Confidence 799998766654331110 0010 013456665444333322 23567788888887654
No 444
>PRK09291 short chain dehydrogenase; Provisional
Probab=72.79 E-value=22 Score=29.11 Aligned_cols=71 Identities=11% Similarity=-0.022 Sum_probs=45.6
Q ss_pred CeEEEEcCCcchhHH----HhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----CCCCeeEEEe
Q 024021 110 GRALVPGCGTGYDVV----AMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----PTELFDLIFD 180 (274)
Q Consensus 110 ~~vLDiG~G~G~~~~----~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~D~v~~ 180 (274)
++||=.|++ |..+. .+++.|++|+++..++.............+ .++.++.+|+.+.. .....|+++.
T Consensus 3 ~~vlVtGas-g~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~id~vi~ 79 (257)
T PRK09291 3 KTILITGAG-SGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRG--LALRVEKLDLTDAIDRAQAAEWDVDVLLN 79 (257)
T ss_pred CEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcceEEEeeCCCHHHHHHHhcCCCCEEEE
Confidence 467777764 44443 344578999999988776655554443332 35888889987621 1236899997
Q ss_pred ccc
Q 024021 181 YTF 183 (274)
Q Consensus 181 ~~~ 183 (274)
+..
T Consensus 80 ~ag 82 (257)
T PRK09291 80 NAG 82 (257)
T ss_pred CCC
Confidence 644
No 445
>PRK07062 short chain dehydrogenase; Provisional
Probab=72.71 E-value=21 Score=29.48 Aligned_cols=77 Identities=14% Similarity=0.037 Sum_probs=49.9
Q ss_pred CCCCeEEEEcCCcchh---HHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------CC
Q 024021 107 LPKGRALVPGCGTGYD---VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PT 172 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~---~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~ 172 (274)
..++++|=.|++.|.- +..+++.|++|+.++.+++.++...+.........++.++.+|+.+.. .-
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 85 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARF 85 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhc
Confidence 3467888888765522 234445899999999988777666555433221235778888987721 12
Q ss_pred CCeeEEEeccc
Q 024021 173 ELFDLIFDYTF 183 (274)
Q Consensus 173 ~~~D~v~~~~~ 183 (274)
++.|+++.+..
T Consensus 86 g~id~li~~Ag 96 (265)
T PRK07062 86 GGVDMLVNNAG 96 (265)
T ss_pred CCCCEEEECCC
Confidence 46899887654
No 446
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=72.37 E-value=8.5 Score=30.91 Aligned_cols=52 Identities=17% Similarity=0.210 Sum_probs=31.8
Q ss_pred HHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCC-CcEEEEeecccc
Q 024021 192 RAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMG-FQAISIVDNKLA 252 (274)
Q Consensus 192 ~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G-f~~~~~~~~~~~ 252 (274)
...++.++.++|+|||.+++...... . ...-...+++..| |.......+...
T Consensus 35 ~~~~~~~~~rvLk~~g~~~i~~~~~~--------~-~~~~~~~~~~~~g~~~~~~~iiW~K~ 87 (231)
T PF01555_consen 35 MEEWLKECYRVLKPGGSIFIFIDDRE--------I-AGFLFELALEIFGGFFLRNEIIWNKP 87 (231)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEE-CCE--------E-CTHHHHHHHHHHTT-EEEEEEEEE-S
T ss_pred HHHHHHHHHhhcCCCeeEEEEecchh--------h-hHHHHHHHHHHhhhhheeccceeEec
Confidence 46788999999999999988762221 1 1113444555556 888776555443
No 447
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=72.30 E-value=53 Score=26.94 Aligned_cols=72 Identities=17% Similarity=0.147 Sum_probs=43.8
Q ss_pred CCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------CCC
Q 024021 108 PKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PTE 173 (274)
Q Consensus 108 ~~~~vLDiG~G~G~---~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~ 173 (274)
.++++|=.|++.|. .+..+++.|++|+.++.++... .........+ .++.++.+|+.+.. ..+
T Consensus 7 ~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~~~-~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (260)
T PRK12823 7 AGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSELVH-EVAAELRAAG--GEALALTADLETYAGAQAAMAAAVEAFG 83 (260)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchHHH-HHHHHHHhcC--CeEEEEEEeCCCHHHHHHHHHHHHHHcC
Confidence 45678888865542 2344555899999999876432 2222222222 35778888987621 114
Q ss_pred CeeEEEecc
Q 024021 174 LFDLIFDYT 182 (274)
Q Consensus 174 ~~D~v~~~~ 182 (274)
.+|+++.+.
T Consensus 84 ~id~lv~nA 92 (260)
T PRK12823 84 RIDVLINNV 92 (260)
T ss_pred CCeEEEECC
Confidence 689988765
No 448
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=72.27 E-value=19 Score=27.55 Aligned_cols=94 Identities=15% Similarity=0.107 Sum_probs=56.5
Q ss_pred EEEEcCCcchhHH--HhhCCCCeEEEEeCChHHHHHHHHHhhcCCC------CcceEEEEcccCCCCCCCCeeEEEeccc
Q 024021 112 ALVPGCGTGYDVV--AMASPERYVVGLEISDIAIKKAEELSSSLPN------AKFVSFLKADFFTWCPTELFDLIFDYTF 183 (274)
Q Consensus 112 vLDiG~G~G~~~~--~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~------~~~~~~~~~d~~~~~~~~~~D~v~~~~~ 183 (274)
|.=+|+|.+..+. .++..|.+|+....+++.++..++....... ..++.+ ..|+.+.. ...|+|+..
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a~--~~ad~Iiia-- 76 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEAL--EDADIIIIA-- 76 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHHH--TT-SEEEE---
T ss_pred EEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHHh--CcccEEEec--
Confidence 5567777776654 3345788999999999888877765432111 122322 33443322 346877742
Q ss_pred ccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021 184 FCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 184 ~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 213 (274)
+|....+.+++++...++++-.++...
T Consensus 77 ---vPs~~~~~~~~~l~~~l~~~~~ii~~~ 103 (157)
T PF01210_consen 77 ---VPSQAHREVLEQLAPYLKKGQIIISAT 103 (157)
T ss_dssp ---S-GGGHHHHHHHHTTTSHTT-EEEETS
T ss_pred ---ccHHHHHHHHHHHhhccCCCCEEEEec
Confidence 333445678999999998777776644
No 449
>PRK06128 oxidoreductase; Provisional
Probab=72.23 E-value=60 Score=27.53 Aligned_cols=104 Identities=15% Similarity=0.064 Sum_probs=57.9
Q ss_pred CCCCeEEEEcCCcchhHH----HhhCCCCeEEEEeCChH--HHHHHHHHhhcCCCCcceEEEEcccCCCCC---------
Q 024021 107 LPKGRALVPGCGTGYDVV----AMASPERYVVGLEISDI--AIKKAEELSSSLPNAKFVSFLKADFFTWCP--------- 171 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~----~l~~~~~~v~~vD~~~~--~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--------- 171 (274)
..++++|=.|++.| ++. .+++.|++|+.+..+.+ ..+.........+ .++.++.+|+.+...
T Consensus 53 l~~k~vlITGas~g-IG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~ 129 (300)
T PRK06128 53 LQGRKALITGADSG-IGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEG--RKAVALPGDLKDEAFCRQLVERAV 129 (300)
T ss_pred cCCCEEEEecCCCc-HHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHHHH
Confidence 34578888886444 443 44457888887765432 2222223332222 357788899876210
Q ss_pred --CCCeeEEEecccccc-------cChhHH-----------HHHHHHHHhcccCCcEEEEEE
Q 024021 172 --TELFDLIFDYTFFCA-------IEPEMR-----------AAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 172 --~~~~D~v~~~~~~~~-------~~~~~~-----------~~~l~~~~~~L~pgG~~~~~~ 213 (274)
-++.|+++.+..... ++.+.+ ..+++.+...++++|.++...
T Consensus 130 ~~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~s 191 (300)
T PRK06128 130 KELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTG 191 (300)
T ss_pred HHhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEEC
Confidence 136899997754321 122222 234556666677788766643
No 450
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=72.20 E-value=12 Score=32.13 Aligned_cols=74 Identities=15% Similarity=0.103 Sum_probs=43.8
Q ss_pred CCeEEEEcCCcchhHHHhhC----CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC----CCCeeEEEe
Q 024021 109 KGRALVPGCGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP----TELFDLIFD 180 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~D~v~~ 180 (274)
+++||-.| |+|..+..+++ .|.+|+++..++.............+...+++++.+|+.+... -..+|+|+.
T Consensus 5 ~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vih 83 (325)
T PLN02989 5 GKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVFH 83 (325)
T ss_pred CCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEEE
Confidence 46788777 56666655544 7889888776654333322222211222468899999987321 125798887
Q ss_pred ccc
Q 024021 181 YTF 183 (274)
Q Consensus 181 ~~~ 183 (274)
...
T Consensus 84 ~A~ 86 (325)
T PLN02989 84 TAS 86 (325)
T ss_pred eCC
Confidence 654
No 451
>PRK07454 short chain dehydrogenase; Provisional
Probab=72.06 E-value=21 Score=28.94 Aligned_cols=73 Identities=15% Similarity=-0.035 Sum_probs=47.3
Q ss_pred CCeEEEEcCCcchhHHHh----hCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----------CC
Q 024021 109 KGRALVPGCGTGYDVVAM----ASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------TE 173 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l----~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-----------~~ 173 (274)
.+++|-.|+ +|.++..+ ++.|.+|++++.++.............+ .++.++.+|+.+... .+
T Consensus 6 ~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (241)
T PRK07454 6 MPRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTG--VKAAAYSIDLSNPEAIAPGIAELLEQFG 82 (241)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 356777775 55555444 4478899999998876655544443322 468889999986211 13
Q ss_pred CeeEEEecccc
Q 024021 174 LFDLIFDYTFF 184 (274)
Q Consensus 174 ~~D~v~~~~~~ 184 (274)
+.|+++.+...
T Consensus 83 ~id~lv~~ag~ 93 (241)
T PRK07454 83 CPDVLINNAGM 93 (241)
T ss_pred CCCEEEECCCc
Confidence 57999876543
No 452
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=72.05 E-value=5.9 Score=34.93 Aligned_cols=95 Identities=16% Similarity=0.133 Sum_probs=54.6
Q ss_pred CCCCeEEEEcCCc-chhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEE--cccCC----CCCCCCeeE
Q 024021 107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLK--ADFFT----WCPTELFDL 177 (274)
Q Consensus 107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~--~d~~~----~~~~~~~D~ 177 (274)
.++.+||=.|+|. |..+..+++ .|+ +|+++|.+++..+.+++.-... -+.... .++.+ ... +.+|+
T Consensus 184 ~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga~~----~i~~~~~~~~~~~~v~~~~~-~g~d~ 258 (368)
T TIGR02818 184 EEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGATD----CVNPNDYDKPIQEVIVEITD-GGVDY 258 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCe----EEcccccchhHHHHHHHHhC-CCCCE
Confidence 4567888888742 333445555 677 7999999999988886642110 011110 11111 111 26898
Q ss_pred EEecccccccChhHHHHHHHHHHhcccCC-cEEEEEEc
Q 024021 178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPD-GELITLMF 214 (274)
Q Consensus 178 v~~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~~~~~~~ 214 (274)
|+..-. . ...+....+.++++ |.+++...
T Consensus 259 vid~~G--~------~~~~~~~~~~~~~~~G~~v~~g~ 288 (368)
T TIGR02818 259 SFECIG--N------VNVMRAALECCHKGWGESIIIGV 288 (368)
T ss_pred EEECCC--C------HHHHHHHHHHhhcCCCeEEEEec
Confidence 884211 0 13456677888886 98876654
No 453
>PRK07035 short chain dehydrogenase; Provisional
Probab=71.84 E-value=23 Score=28.96 Aligned_cols=75 Identities=13% Similarity=0.038 Sum_probs=48.8
Q ss_pred CCCCeEEEEcCCcchh---HHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----------C
Q 024021 107 LPKGRALVPGCGTGYD---VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T 172 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~---~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-----------~ 172 (274)
..++++|=.|++.|.- +..+++.|.+|+.++.++...+...+.....+ .++.++..|+.+... -
T Consensus 6 l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 83 (252)
T PRK07035 6 LTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAG--GKAEALACHIGEMEQIDALFAHIRERH 83 (252)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 3456788888776532 23455588999999998877666555544332 357788888876210 1
Q ss_pred CCeeEEEeccc
Q 024021 173 ELFDLIFDYTF 183 (274)
Q Consensus 173 ~~~D~v~~~~~ 183 (274)
+++|+++.+..
T Consensus 84 ~~id~li~~ag 94 (252)
T PRK07035 84 GRLDILVNNAA 94 (252)
T ss_pred CCCCEEEECCC
Confidence 35899886654
No 454
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=71.56 E-value=39 Score=28.89 Aligned_cols=113 Identities=16% Similarity=0.106 Sum_probs=61.7
Q ss_pred eEEEEcCCc--chhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-CCCeeEEEeccccccc
Q 024021 111 RALVPGCGT--GYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-TELFDLIFDYTFFCAI 187 (274)
Q Consensus 111 ~vLDiG~G~--G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~~~~~ 187 (274)
+|-=||+|. ...+..+++.|.++++.|.+++..+.+.+. + +.. ..+..+... ....|+|+..-.
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~----g----~~~-~~~~~e~~~~~~~~dvvi~~v~---- 68 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEE----G----ATG-ADSLEELVAKLPAPRVVWLMVP---- 68 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHC----C----Cee-cCCHHHHHhhcCCCCEEEEEec----
Confidence 455566664 123445556888999999999877665431 1 111 111111110 012477775322
Q ss_pred ChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEE
Q 024021 188 EPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAIS 245 (274)
Q Consensus 188 ~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 245 (274)
+......++..+...+++|..++-.. .. ...+..++.+.+++.|...++
T Consensus 69 ~~~~~~~v~~~l~~~l~~g~ivid~s--t~-------~~~~~~~~~~~~~~~g~~~~d 117 (301)
T PRK09599 69 AGEITDATIDELAPLLSPGDIVIDGG--NS-------YYKDDIRRAELLAEKGIHFVD 117 (301)
T ss_pred CCcHHHHHHHHHHhhCCCCCEEEeCC--CC-------ChhHHHHHHHHHHHcCCEEEe
Confidence 11244566777888888875443321 11 111456677888888877665
No 455
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=71.49 E-value=22 Score=29.47 Aligned_cols=76 Identities=17% Similarity=0.083 Sum_probs=51.5
Q ss_pred CCCCeEEEEcCCcchh---HHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------CC
Q 024021 107 LPKGRALVPGCGTGYD---VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PT 172 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~---~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~ 172 (274)
..++++|-.|++.|.- +..+++.|++++.++.+++.++.........+ .++.++.+|+.+.. ..
T Consensus 8 ~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 85 (265)
T PRK07097 8 LKGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELG--IEAHGYVCDVTDEDGVQAMVSQIEKEV 85 (265)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 4567888888776532 34555689999999998877766665554432 35888999998621 11
Q ss_pred CCeeEEEecccc
Q 024021 173 ELFDLIFDYTFF 184 (274)
Q Consensus 173 ~~~D~v~~~~~~ 184 (274)
+++|+++.+...
T Consensus 86 ~~id~li~~ag~ 97 (265)
T PRK07097 86 GVIDILVNNAGI 97 (265)
T ss_pred CCCCEEEECCCC
Confidence 468999877544
No 456
>PRK06949 short chain dehydrogenase; Provisional
Probab=71.46 E-value=25 Score=28.82 Aligned_cols=74 Identities=15% Similarity=0.033 Sum_probs=48.3
Q ss_pred CCCCeEEEEcCCcchhHHHh----hCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------C
Q 024021 107 LPKGRALVPGCGTGYDVVAM----ASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------P 171 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l----~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~ 171 (274)
..+++||-.| |+|..+..+ ++.|++|++++.+++.++.........+ .++.++.+|+.+.. .
T Consensus 7 ~~~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (258)
T PRK06949 7 LEGKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEG--GAAHVVSLDVTDYQSIKAAVAHAETE 83 (258)
T ss_pred CCCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHh
Confidence 4457888887 444554444 4478899999998887766655443322 35788888987521 0
Q ss_pred CCCeeEEEeccc
Q 024021 172 TELFDLIFDYTF 183 (274)
Q Consensus 172 ~~~~D~v~~~~~ 183 (274)
.+.+|+++.+..
T Consensus 84 ~~~~d~li~~ag 95 (258)
T PRK06949 84 AGTIDILVNNSG 95 (258)
T ss_pred cCCCCEEEECCC
Confidence 135798887654
No 457
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=71.26 E-value=27 Score=32.06 Aligned_cols=86 Identities=16% Similarity=0.000 Sum_probs=52.4
Q ss_pred CCCCCeEEEEcCCcchhHHHhhC----CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEec
Q 024021 106 ALPKGRALVPGCGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDY 181 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~ 181 (274)
...+++|+=+|+|. .+..++. .|++|+.+|.++.....+.. .+ +... ++.+.. ...|+|+..
T Consensus 251 ~LaGKtVgVIG~G~--IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~----~G----~~~~--~leell--~~ADIVI~a 316 (476)
T PTZ00075 251 MIAGKTVVVCGYGD--VGKGCAQALRGFGARVVVTEIDPICALQAAM----EG----YQVV--TLEDVV--ETADIFVTA 316 (476)
T ss_pred CcCCCEEEEECCCH--HHHHHHHHHHHCCCEEEEEeCCchhHHHHHh----cC----ceec--cHHHHH--hcCCEEEEC
Confidence 45678999999886 4444333 68899999998765433322 11 2211 222222 357999865
Q ss_pred ccccccChhHHHHHH-HHHHhcccCCcEEEEEE
Q 024021 182 TFFCAIEPEMRAAWA-QKIKDFLKPDGELITLM 213 (274)
Q Consensus 182 ~~~~~~~~~~~~~~l-~~~~~~L~pgG~~~~~~ 213 (274)
..- ..++ ......+|||++++-+.
T Consensus 317 tGt--------~~iI~~e~~~~MKpGAiLINvG 341 (476)
T PTZ00075 317 TGN--------KDIITLEHMRRMKNNAIVGNIG 341 (476)
T ss_pred CCc--------ccccCHHHHhccCCCcEEEEcC
Confidence 211 1223 46778899999987764
No 458
>PRK07890 short chain dehydrogenase; Provisional
Probab=70.99 E-value=24 Score=28.91 Aligned_cols=73 Identities=15% Similarity=0.053 Sum_probs=47.8
Q ss_pred CCCeEEEEcCCcchhHH----HhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----------C
Q 024021 108 PKGRALVPGCGTGYDVV----AMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T 172 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~----~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-----------~ 172 (274)
.++++|=.|++.| ++. .+++.|++|++++.++...+.........+ .++.++..|+.+... -
T Consensus 4 ~~k~vlItGa~~~-IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (258)
T PRK07890 4 KGKVVVVSGVGPG-LGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLG--RRALAVPTDITDEDQCANLVALALERF 80 (258)
T ss_pred CCCEEEEECCCCc-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhC--CceEEEecCCCCHHHHHHHHHHHHHHc
Confidence 4567887776444 443 445589999999998876665555443322 457889999876211 1
Q ss_pred CCeeEEEeccc
Q 024021 173 ELFDLIFDYTF 183 (274)
Q Consensus 173 ~~~D~v~~~~~ 183 (274)
+..|+++.+..
T Consensus 81 g~~d~vi~~ag 91 (258)
T PRK07890 81 GRVDALVNNAF 91 (258)
T ss_pred CCccEEEECCc
Confidence 46899887654
No 459
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=70.92 E-value=34 Score=30.68 Aligned_cols=98 Identities=18% Similarity=0.262 Sum_probs=55.7
Q ss_pred CCCCeEEEEc--CCcchhHHHhhC-CC--C-eEEEEeCChHHHHHHHHHhhcCCC--CcceEEEE----cccCC----CC
Q 024021 107 LPKGRALVPG--CGTGYDVVAMAS-PE--R-YVVGLEISDIAIKKAEELSSSLPN--AKFVSFLK----ADFFT----WC 170 (274)
Q Consensus 107 ~~~~~vLDiG--~G~G~~~~~l~~-~~--~-~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~~----~d~~~----~~ 170 (274)
.++.+||=+| .+.|..+..+++ .| . +|+++|.+++.++.+++....... .....++. .++.+ ..
T Consensus 174 ~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~~~t 253 (410)
T cd08238 174 KPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHATLMELT 253 (410)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEEEECCCccccHHHHHHHHh
Confidence 3456888786 346666666666 33 3 799999999999999875321100 00111121 11111 12
Q ss_pred CCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEE
Q 024021 171 PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITL 212 (274)
Q Consensus 171 ~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~ 212 (274)
....+|+|+..-. . ...+....++++++|.+++.
T Consensus 254 ~g~g~D~vid~~g----~----~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 254 GGQGFDDVFVFVP----V----PELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred CCCCCCEEEEcCC----C----HHHHHHHHHHhccCCeEEEE
Confidence 2346898884211 0 23456778889988876654
No 460
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=70.86 E-value=7.2 Score=26.77 Aligned_cols=79 Identities=16% Similarity=0.062 Sum_probs=47.9
Q ss_pred CcchhHHHhhC----CC---CeEE-EEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccccCh
Q 024021 118 GTGYDVVAMAS----PE---RYVV-GLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEP 189 (274)
Q Consensus 118 G~G~~~~~l~~----~~---~~v~-~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~ 189 (274)
|.|.++..+++ .+ .+++ +.+.+++......+... +.+...+..+.. +..|+|+.. +++
T Consensus 6 G~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~-------~~~~~~~~~~~~--~~advvila-----v~p 71 (96)
T PF03807_consen 6 GAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYG-------VQATADDNEEAA--QEADVVILA-----VKP 71 (96)
T ss_dssp STSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCT-------TEEESEEHHHHH--HHTSEEEE------S-G
T ss_pred CCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhc-------cccccCChHHhh--ccCCEEEEE-----ECH
Confidence 55666665554 66 6888 45999998888776653 333333333222 245888843 445
Q ss_pred hHHHHHHHHHHhcccCCcEEEE
Q 024021 190 EMRAAWAQKIKDFLKPDGELIT 211 (274)
Q Consensus 190 ~~~~~~l~~~~~~L~pgG~~~~ 211 (274)
.....+++.+ ..+.++..++-
T Consensus 72 ~~~~~v~~~i-~~~~~~~~vis 92 (96)
T PF03807_consen 72 QQLPEVLSEI-PHLLKGKLVIS 92 (96)
T ss_dssp GGHHHHHHHH-HHHHTTSEEEE
T ss_pred HHHHHHHHHH-hhccCCCEEEE
Confidence 5566778888 66666666554
No 461
>PRK07677 short chain dehydrogenase; Provisional
Probab=70.81 E-value=23 Score=29.09 Aligned_cols=71 Identities=14% Similarity=0.076 Sum_probs=45.8
Q ss_pred CeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------CCCCe
Q 024021 110 GRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PTELF 175 (274)
Q Consensus 110 ~~vLDiG~G~G~---~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~~~ 175 (274)
+++|-.|++.|. .+..+++.|.+|++++.++...+.........+ .++.++.+|+.+.. .-++.
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 79 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFP--GQVLTVQMDVRNPEDVQKMVEQIDEKFGRI 79 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhCCc
Confidence 467777775542 223445588999999998876666555443332 46888999987621 01467
Q ss_pred eEEEecc
Q 024021 176 DLIFDYT 182 (274)
Q Consensus 176 D~v~~~~ 182 (274)
|+++.+.
T Consensus 80 d~lI~~a 86 (252)
T PRK07677 80 DALINNA 86 (252)
T ss_pred cEEEECC
Confidence 9988764
No 462
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=70.77 E-value=13 Score=31.78 Aligned_cols=45 Identities=9% Similarity=-0.007 Sum_probs=36.6
Q ss_pred CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhh
Q 024021 107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSS 151 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~ 151 (274)
..+.+|.-+|+|--..+.++.+...+|.+||+++..+..-+-++.
T Consensus 62 g~ghrivtigSGGcn~L~ylsr~Pa~id~VDlN~ahiAln~lkla 106 (414)
T COG5379 62 GIGHRIVTIGSGGCNMLAYLSRAPARIDVVDLNPAHIALNRLKLA 106 (414)
T ss_pred CCCcEEEEecCCcchHHHHhhcCCceeEEEeCCHHHHHHHHHHHH
Confidence 446799999998766788888888899999999998887665543
No 463
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=70.74 E-value=71 Score=27.78 Aligned_cols=72 Identities=15% Similarity=0.043 Sum_probs=44.5
Q ss_pred CCCeEEEEcCCcchhHHHhhC----CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC----CCCCeeEEE
Q 024021 108 PKGRALVPGCGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC----PTELFDLIF 179 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~D~v~ 179 (274)
.+++||=.|+ +|..+..+++ .|.+|++++.++............ ..+++++.+|+.+.. .-..+|.|+
T Consensus 9 ~~~~vLVtG~-~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 84 (353)
T PLN02896 9 ATGTYCVTGA-TGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKE---GDRLRLFRADLQEEGSFDEAVKGCDGVF 84 (353)
T ss_pred CCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhcc---CCeEEEEECCCCCHHHHHHHHcCCCEEE
Confidence 4578888874 6777665554 788999988766543332222211 146889999988621 113478888
Q ss_pred eccc
Q 024021 180 DYTF 183 (274)
Q Consensus 180 ~~~~ 183 (274)
-...
T Consensus 85 h~A~ 88 (353)
T PLN02896 85 HVAA 88 (353)
T ss_pred ECCc
Confidence 6654
No 464
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=70.70 E-value=11 Score=32.18 Aligned_cols=74 Identities=16% Similarity=0.084 Sum_probs=43.2
Q ss_pred CCeEEEEcCCcchhHHHhhC----CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC----CCCeeEEEe
Q 024021 109 KGRALVPGCGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP----TELFDLIFD 180 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~D~v~~ 180 (274)
+++||=.|+ +|..+..+++ .|.+|++++.++.............+..++++++.+|+.+... -..+|.|+.
T Consensus 4 ~~~ilVtGa-tGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 82 (322)
T PLN02662 4 GKVVCVTGA-SGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFH 82 (322)
T ss_pred CCEEEEECC-hHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEE
Confidence 457777664 6777665554 7889998887654322222211111112468999999986321 135788876
Q ss_pred ccc
Q 024021 181 YTF 183 (274)
Q Consensus 181 ~~~ 183 (274)
...
T Consensus 83 ~A~ 85 (322)
T PLN02662 83 TAS 85 (322)
T ss_pred eCC
Confidence 543
No 465
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=70.66 E-value=14 Score=31.94 Aligned_cols=96 Identities=21% Similarity=0.256 Sum_probs=53.9
Q ss_pred CCCCeEEEEcCCc-chhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccC----CCCCCCCeeEEE
Q 024021 107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFF----TWCPTELFDLIF 179 (274)
Q Consensus 107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~----~~~~~~~~D~v~ 179 (274)
.++.+||-.|+|. |..+..+++ .|. .+++++.+++..+.+++.-.. .-+.....++. .......+|+|+
T Consensus 162 ~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~lg~~----~~~~~~~~~~~~~~~~~~~~~~~d~v~ 237 (341)
T PRK05396 162 LVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKMGAT----RAVNVAKEDLRDVMAELGMTEGFDVGL 237 (341)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCc----EEecCccccHHHHHHHhcCCCCCCEEE
Confidence 3566777666543 444445554 677 688888888777666553210 00011111111 122345689998
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021 180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (274)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 214 (274)
....- ...+..+.+.|+++|.++....
T Consensus 238 d~~g~--------~~~~~~~~~~l~~~G~~v~~g~ 264 (341)
T PRK05396 238 EMSGA--------PSAFRQMLDNMNHGGRIAMLGI 264 (341)
T ss_pred ECCCC--------HHHHHHHHHHHhcCCEEEEEec
Confidence 52211 1345678889999999888754
No 466
>PRK08507 prephenate dehydrogenase; Validated
Probab=70.61 E-value=23 Score=29.78 Aligned_cols=83 Identities=25% Similarity=0.251 Sum_probs=46.5
Q ss_pred eEEEEcCCc--chhHHHhhCCCC--eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccc
Q 024021 111 RALVPGCGT--GYDVVAMASPER--YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA 186 (274)
Q Consensus 111 ~vLDiG~G~--G~~~~~l~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~ 186 (274)
+|.=||+|. |.++..+.+.|. +|+++|.+++..+.+... +. +.. ..+..+. . ..|+|+..
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~----g~---~~~-~~~~~~~--~-~aD~Vila----- 65 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALEL----GL---VDE-IVSFEEL--K-KCDVIFLA----- 65 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHC----CC---Ccc-cCCHHHH--h-cCCEEEEe-----
Confidence 455676654 233344444554 799999999887766432 11 101 1121111 1 26888843
Q ss_pred cChhHHHHHHHHHHhcccCCcEEE
Q 024021 187 IEPEMRAAWAQKIKDFLKPDGELI 210 (274)
Q Consensus 187 ~~~~~~~~~l~~~~~~L~pgG~~~ 210 (274)
+++.....++..+.. ++++..++
T Consensus 66 vp~~~~~~~~~~l~~-l~~~~iv~ 88 (275)
T PRK08507 66 IPVDAIIEILPKLLD-IKENTTII 88 (275)
T ss_pred CcHHHHHHHHHHHhc-cCCCCEEE
Confidence 345555677778877 77776443
No 467
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=70.23 E-value=7.9 Score=33.97 Aligned_cols=92 Identities=16% Similarity=0.191 Sum_probs=53.4
Q ss_pred CCCCeEEEEcCC-cchhHHHhhC-CCCe-EEEEeCChHHHHHHHHHhhcCCCCcceEEEEc---cc----CCCCCCCCee
Q 024021 107 LPKGRALVPGCG-TGYDVVAMAS-PERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKA---DF----FTWCPTELFD 176 (274)
Q Consensus 107 ~~~~~vLDiG~G-~G~~~~~l~~-~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~---d~----~~~~~~~~~D 176 (274)
.++.+||-.|+| .|..+..+++ .|.. |++++.++...+.+++.- . ..++.. +. ........+|
T Consensus 181 ~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~~g----~---~~vv~~~~~~~~~~l~~~~~~~~vd 253 (363)
T cd08279 181 RPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARRFG----A---THTVNASEDDAVEAVRDLTDGRGAD 253 (363)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHhC----C---eEEeCCCCccHHHHHHHHcCCCCCC
Confidence 345678777764 3444445554 6775 999998888777765321 1 111111 11 1122345689
Q ss_pred EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021 177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 177 ~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 213 (274)
+++..-.- ...+..+.+.|+++|.++...
T Consensus 254 ~vld~~~~--------~~~~~~~~~~l~~~G~~v~~g 282 (363)
T cd08279 254 YAFEAVGR--------AATIRQALAMTRKGGTAVVVG 282 (363)
T ss_pred EEEEcCCC--------hHHHHHHHHHhhcCCeEEEEe
Confidence 88842210 134577888899999988754
No 468
>PRK06914 short chain dehydrogenase; Provisional
Probab=70.17 E-value=27 Score=29.14 Aligned_cols=73 Identities=12% Similarity=0.031 Sum_probs=46.0
Q ss_pred CeEEEEcCCcchhHH----HhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC----------CCCe
Q 024021 110 GRALVPGCGTGYDVV----AMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP----------TELF 175 (274)
Q Consensus 110 ~~vLDiG~G~G~~~~----~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~----------~~~~ 175 (274)
+++|-.|++. ..+. .+++.|++|++++-+++..+.........+...++.++.+|+.+... -++.
T Consensus 4 k~~lItGasg-~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~i 82 (280)
T PRK06914 4 KIAIVTGASS-GFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIGRI 82 (280)
T ss_pred CEEEEECCCc-hHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcCCe
Confidence 4677777543 4443 34458999999998877665554443333223468899999987221 1357
Q ss_pred eEEEeccc
Q 024021 176 DLIFDYTF 183 (274)
Q Consensus 176 D~v~~~~~ 183 (274)
|.|+.+..
T Consensus 83 d~vv~~ag 90 (280)
T PRK06914 83 DLLVNNAG 90 (280)
T ss_pred eEEEECCc
Confidence 88887643
No 469
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=70.14 E-value=64 Score=26.97 Aligned_cols=74 Identities=16% Similarity=0.053 Sum_probs=44.3
Q ss_pred CCCeEEEEcCCc--c---hhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------C
Q 024021 108 PKGRALVPGCGT--G---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------P 171 (274)
Q Consensus 108 ~~~~vLDiG~G~--G---~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~ 171 (274)
.++.+|-.|++. | ..+..|++.|++|+.++.+....+..++.....+ ...++.+|+.+.. .
T Consensus 6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g---~~~~~~~Dv~d~~~v~~~~~~~~~~ 82 (271)
T PRK06505 6 QGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLG---SDFVLPCDVEDIASVDAVFEALEKK 82 (271)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcC---CceEEeCCCCCHHHHHHHHHHHHHH
Confidence 457888888865 3 2234556689999998876543333333322222 1346788887621 1
Q ss_pred CCCeeEEEecccc
Q 024021 172 TELFDLIFDYTFF 184 (274)
Q Consensus 172 ~~~~D~v~~~~~~ 184 (274)
.++.|+++.+..+
T Consensus 83 ~g~iD~lVnnAG~ 95 (271)
T PRK06505 83 WGKLDFVVHAIGF 95 (271)
T ss_pred hCCCCEEEECCcc
Confidence 2578999887543
No 470
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=69.45 E-value=19 Score=30.56 Aligned_cols=88 Identities=18% Similarity=0.049 Sum_probs=48.0
Q ss_pred CeEEEEcCCc--chhHHHhhCCCC--eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccc
Q 024021 110 GRALVPGCGT--GYDVVAMASPER--YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC 185 (274)
Q Consensus 110 ~~vLDiG~G~--G~~~~~l~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~ 185 (274)
.+|+=+|.|- |.++..+.+.|. .+++.|.+......+...- +.....+-.........|+|+.+-.
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lg--------v~d~~~~~~~~~~~~~aD~VivavP-- 73 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELG--------VIDELTVAGLAEAAAEADLVIVAVP-- 73 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcC--------cccccccchhhhhcccCCEEEEecc--
Confidence 4566666442 233344455666 5688888887777765432 1111111000122245798885433
Q ss_pred ccChhHHHHHHHHHHhcccCCcEEE
Q 024021 186 AIEPEMRAAWAQKIKDFLKPDGELI 210 (274)
Q Consensus 186 ~~~~~~~~~~l~~~~~~L~pgG~~~ 210 (274)
-.....+++++...|++|..+.
T Consensus 74 ---i~~~~~~l~~l~~~l~~g~iv~ 95 (279)
T COG0287 74 ---IEATEEVLKELAPHLKKGAIVT 95 (279)
T ss_pred ---HHHHHHHHHHhcccCCCCCEEE
Confidence 3444667778887777776543
No 471
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=69.44 E-value=38 Score=30.34 Aligned_cols=94 Identities=19% Similarity=0.107 Sum_probs=52.1
Q ss_pred CeEEEEcCCcchhHH----HhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccC-------------C---C
Q 024021 110 GRALVPGCGTGYDVV----AMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFF-------------T---W 169 (274)
Q Consensus 110 ~~vLDiG~G~G~~~~----~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~-------------~---~ 169 (274)
.+|--+|- |+.++ .+++.|+.|+|+|+++..++....-. ..+..-+.. . +
T Consensus 10 ~~I~ViGL--GYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~--------~~i~e~~~~~~v~~~v~~g~lraTtd~ 79 (436)
T COG0677 10 ATIGVIGL--GYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGE--------SYIEEPDLDEVVKEAVESGKLRATTDP 79 (436)
T ss_pred eEEEEEcc--ccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCc--------ceeecCcHHHHHHHHHhcCCceEecCh
Confidence 45656644 44443 34458999999999998887764321 111111111 0 0
Q ss_pred CCCCCeeEEEe-ccc-ccc---cChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021 170 CPTELFDLIFD-YTF-FCA---IEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 170 ~~~~~~D~v~~-~~~-~~~---~~~~~~~~~l~~~~~~L~pgG~~~~~~ 213 (274)
..-...|+++. ..+ +.. -+-.......+.+...|++|-.+++..
T Consensus 80 ~~l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlES 128 (436)
T COG0677 80 EELKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILES 128 (436)
T ss_pred hhcccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEec
Confidence 11124565543 222 111 111345677899999999988877754
No 472
>PRK06125 short chain dehydrogenase; Provisional
Probab=69.37 E-value=33 Score=28.22 Aligned_cols=74 Identities=14% Similarity=0.017 Sum_probs=48.1
Q ss_pred CCCeEEEEcCCcchhHH----HhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-------CCCCee
Q 024021 108 PKGRALVPGCGTGYDVV----AMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-------PTELFD 176 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~----~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-------~~~~~D 176 (274)
.++++|=.|++.| ++. .+++.|++|++++.+++..+.....+.... ..++.++.+|+.+.. ..++.|
T Consensus 6 ~~k~vlItG~~~g-iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~g~id 83 (259)
T PRK06125 6 AGKRVLITGASKG-IGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAH-GVDVAVHALDLSSPEAREQLAAEAGDID 83 (259)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHhCCCC
Confidence 4578888886544 433 345588999999998877666555443321 135788888987621 124689
Q ss_pred EEEeccc
Q 024021 177 LIFDYTF 183 (274)
Q Consensus 177 ~v~~~~~ 183 (274)
+++.+..
T Consensus 84 ~lv~~ag 90 (259)
T PRK06125 84 ILVNNAG 90 (259)
T ss_pred EEEECCC
Confidence 8887643
No 473
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=69.19 E-value=71 Score=27.14 Aligned_cols=95 Identities=15% Similarity=0.117 Sum_probs=54.0
Q ss_pred CeEEEEcCCc-c-hhHHHhhCCCCeEEEEeCChHHHHHHHHHhh-------cCCC-C--------cceEEEEcccCCCCC
Q 024021 110 GRALVPGCGT-G-YDVVAMASPERYVVGLEISDIAIKKAEELSS-------SLPN-A--------KFVSFLKADFFTWCP 171 (274)
Q Consensus 110 ~~vLDiG~G~-G-~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~-------~~~~-~--------~~~~~~~~d~~~~~~ 171 (274)
.+|-=||+|. | .++..++..|.+|+++|.+++.++.+++.+. ..+. . .++. ...+. +.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~-~~-- 80 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIR-CTTNL-EE-- 80 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceE-eeCCH-HH--
Confidence 4577777763 2 2334445578999999999999887655432 1110 0 0111 11122 11
Q ss_pred CCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEE
Q 024021 172 TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT 211 (274)
Q Consensus 172 ~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~ 211 (274)
-...|+|+..-. + +++....++.++...++++.+++.
T Consensus 81 ~~~aD~Vieav~-e--~~~~k~~v~~~l~~~~~~~~il~s 117 (295)
T PLN02545 81 LRDADFIIEAIV-E--SEDLKKKLFSELDRICKPSAILAS 117 (295)
T ss_pred hCCCCEEEEcCc-c--CHHHHHHHHHHHHhhCCCCcEEEE
Confidence 234688884311 1 134556778888888888876543
No 474
>PRK08339 short chain dehydrogenase; Provisional
Probab=69.16 E-value=30 Score=28.78 Aligned_cols=76 Identities=24% Similarity=0.143 Sum_probs=49.6
Q ss_pred CCCCeEEEEcCCcchh---HHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC----------CCC
Q 024021 107 LPKGRALVPGCGTGYD---VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC----------PTE 173 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~---~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----------~~~ 173 (274)
..++++|=.|++.|.- +..+++.|++|+.++.+++.++...+...... ..++.++.+|+.+.. ..+
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~i~~~~~~~~~~g 84 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSES-NVDVSYIVADLTKREDLERTVKELKNIG 84 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHHHhhC
Confidence 3467788888765532 34555589999999998877766655543221 135888999988621 114
Q ss_pred CeeEEEeccc
Q 024021 174 LFDLIFDYTF 183 (274)
Q Consensus 174 ~~D~v~~~~~ 183 (274)
..|+++.+..
T Consensus 85 ~iD~lv~nag 94 (263)
T PRK08339 85 EPDIFFFSTG 94 (263)
T ss_pred CCcEEEECCC
Confidence 6898887643
No 475
>PRK08862 short chain dehydrogenase; Provisional
Probab=68.70 E-value=27 Score=28.36 Aligned_cols=73 Identities=15% Similarity=0.072 Sum_probs=50.5
Q ss_pred CCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------CCC
Q 024021 108 PKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PTE 173 (274)
Q Consensus 108 ~~~~vLDiG~G~G~---~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~ 173 (274)
.++++|=.|++.|. .+..+++.|++|+.++.+++.++...+.....+ ..+..+..|+.+.. .-+
T Consensus 4 ~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g 81 (227)
T PRK08862 4 KSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALT--DNVYSFQLKDFSQESIRHLFDAIEQQFN 81 (227)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CCeEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 45788888888875 345566689999999999888777666554433 34667777876621 013
Q ss_pred -CeeEEEecc
Q 024021 174 -LFDLIFDYT 182 (274)
Q Consensus 174 -~~D~v~~~~ 182 (274)
..|+++.+.
T Consensus 82 ~~iD~li~na 91 (227)
T PRK08862 82 RAPDVLVNNW 91 (227)
T ss_pred CCCCEEEECC
Confidence 789988875
No 476
>PRK07326 short chain dehydrogenase; Provisional
Probab=68.63 E-value=26 Score=28.28 Aligned_cols=71 Identities=17% Similarity=-0.029 Sum_probs=46.6
Q ss_pred CCeEEEEcCCcchhHHHhh----CCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----------CC
Q 024021 109 KGRALVPGCGTGYDVVAMA----SPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------TE 173 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-----------~~ 173 (274)
+.++|=.|+ +|..+..++ +.|.+|++++.++.......+..... .++.++.+|+.+... .+
T Consensus 6 ~~~ilItGa-tg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (237)
T PRK07326 6 GKVALITGG-SKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK---GNVLGLAADVRDEADVQRAVDAIVAAFG 81 (237)
T ss_pred CCEEEEECC-CCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc---CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 467888884 565555444 47889999999887666555544322 358888999876210 13
Q ss_pred CeeEEEeccc
Q 024021 174 LFDLIFDYTF 183 (274)
Q Consensus 174 ~~D~v~~~~~ 183 (274)
.+|+|+.+..
T Consensus 82 ~~d~vi~~ag 91 (237)
T PRK07326 82 GLDVLIANAG 91 (237)
T ss_pred CCCEEEECCC
Confidence 6898886643
No 477
>PRK07814 short chain dehydrogenase; Provisional
Probab=68.37 E-value=31 Score=28.52 Aligned_cols=74 Identities=15% Similarity=0.047 Sum_probs=48.7
Q ss_pred CCCCeEEEEcCCcchhHHH----hhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----------
Q 024021 107 LPKGRALVPGCGTGYDVVA----MASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP----------- 171 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~----l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~----------- 171 (274)
.+++++|=.|+ +|..+.. +++.|++|++++.+++..+.........+ .++.++.+|+.+...
T Consensus 8 ~~~~~vlItGa-sggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 84 (263)
T PRK07814 8 LDDQVAVVTGA-GRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAG--RRAHVVAADLAHPEATAGLAGQAVEA 84 (263)
T ss_pred CCCCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 34678888885 4445444 44589999999998877665555443322 458888899887221
Q ss_pred CCCeeEEEeccc
Q 024021 172 TELFDLIFDYTF 183 (274)
Q Consensus 172 ~~~~D~v~~~~~ 183 (274)
-+++|+|+.+..
T Consensus 85 ~~~id~vi~~Ag 96 (263)
T PRK07814 85 FGRLDIVVNNVG 96 (263)
T ss_pred cCCCCEEEECCC
Confidence 146899987643
No 478
>PRK06484 short chain dehydrogenase; Validated
Probab=68.32 E-value=87 Score=28.93 Aligned_cols=71 Identities=13% Similarity=0.033 Sum_probs=46.1
Q ss_pred CCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------CCC
Q 024021 108 PKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PTE 173 (274)
Q Consensus 108 ~~~~vLDiG~G~G~---~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~ 173 (274)
.++.+|=.|++.|. .+..+++.|++|+.++.+++.++...+... .++..+.+|+.+.. ..+
T Consensus 268 ~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~~g 342 (520)
T PRK06484 268 SPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAEALG-----DEHLSVQADITDEAAVESAFAQIQARWG 342 (520)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC-----CceeEEEccCCCHHHHHHHHHHHHHHcC
Confidence 35678877776552 234455589999999998877666554331 34667788887621 114
Q ss_pred CeeEEEeccc
Q 024021 174 LFDLIFDYTF 183 (274)
Q Consensus 174 ~~D~v~~~~~ 183 (274)
+.|+++.+..
T Consensus 343 ~id~li~nAg 352 (520)
T PRK06484 343 RLDVLVNNAG 352 (520)
T ss_pred CCCEEEECCC
Confidence 6899987644
No 479
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=68.31 E-value=22 Score=34.84 Aligned_cols=98 Identities=8% Similarity=0.032 Sum_probs=62.3
Q ss_pred CeEEEEcCCcc--hhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcC-------C-CC--------cceEEEEcccCCCCC
Q 024021 110 GRALVPGCGTG--YDVVAMASPERYVVGLEISDIAIKKAEELSSSL-------P-NA--------KFVSFLKADFFTWCP 171 (274)
Q Consensus 110 ~~vLDiG~G~G--~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~-------~-~~--------~~~~~~~~d~~~~~~ 171 (274)
.+|--||+|+= .++..++..|..|+.+|.+++.++.+..++... + .. .++++. .|+. .
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~---~ 411 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPT-LDYS---G 411 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHH---H
Confidence 57888999862 333455568999999999999999877655321 1 00 122222 1221 1
Q ss_pred CCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021 172 TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (274)
Q Consensus 172 ~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 214 (274)
-...|+|+-. +++.+ +...+++.++.++++|+.+|...+.
T Consensus 412 ~~~aDlViEA-v~E~l--~~K~~vf~~l~~~~~~~~ilasNTS 451 (737)
T TIGR02441 412 FKNADMVIEA-VFEDL--SLKHKVIKEVEAVVPPHCIIASNTS 451 (737)
T ss_pred hccCCeehhh-ccccH--HHHHHHHHHHHhhCCCCcEEEEcCC
Confidence 2356877732 33333 4457899999999999988776543
No 480
>PRK05876 short chain dehydrogenase; Provisional
Probab=68.30 E-value=29 Score=29.10 Aligned_cols=74 Identities=16% Similarity=0.078 Sum_probs=48.1
Q ss_pred CCCeEEEEcCCcchhHH----HhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------CC
Q 024021 108 PKGRALVPGCGTGYDVV----AMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PT 172 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~----~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~ 172 (274)
.++++|=.|++.| ++. .|++.|++|+.++.++..++...+.+...+ .++.++.+|+.+.. ..
T Consensus 5 ~~k~vlVTGas~g-IG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 81 (275)
T PRK05876 5 PGRGAVITGGASG-IGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEG--FDVHGVMCDVRHREEVTHLADEAFRLL 81 (275)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 4567887776554 443 444589999999998876665554443332 35788899997621 11
Q ss_pred CCeeEEEecccc
Q 024021 173 ELFDLIFDYTFF 184 (274)
Q Consensus 173 ~~~D~v~~~~~~ 184 (274)
++.|+++.+..+
T Consensus 82 g~id~li~nAg~ 93 (275)
T PRK05876 82 GHVDVVFSNAGI 93 (275)
T ss_pred CCCCEEEECCCc
Confidence 357998877543
No 481
>PRK09242 tropinone reductase; Provisional
Probab=68.07 E-value=31 Score=28.35 Aligned_cols=77 Identities=14% Similarity=-0.001 Sum_probs=49.2
Q ss_pred CCCeEEEEcCCcchh---HHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------CCC
Q 024021 108 PKGRALVPGCGTGYD---VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PTE 173 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~---~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~ 173 (274)
.++++|=.|++.|.- +..+++.|++|+.++.+++..+.............++.++.+|+.+.. ..+
T Consensus 8 ~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 87 (257)
T PRK09242 8 DGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHWD 87 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 457888888755422 234445889999999988776665555433211246888899987621 124
Q ss_pred CeeEEEecccc
Q 024021 174 LFDLIFDYTFF 184 (274)
Q Consensus 174 ~~D~v~~~~~~ 184 (274)
++|+++.+...
T Consensus 88 ~id~li~~ag~ 98 (257)
T PRK09242 88 GLHILVNNAGG 98 (257)
T ss_pred CCCEEEECCCC
Confidence 68988876543
No 482
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=68.03 E-value=72 Score=26.75 Aligned_cols=103 Identities=14% Similarity=0.085 Sum_probs=57.6
Q ss_pred CCCeEEEEcCCc-chhH----HHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------C
Q 024021 108 PKGRALVPGCGT-GYDV----VAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------P 171 (274)
Q Consensus 108 ~~~~vLDiG~G~-G~~~----~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~ 171 (274)
.++.+|=.|++. +..+ ..+++.|++|+.++.+....+..++.....+ .. .++.+|+.+.. .
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~--~~-~~~~~Dv~d~~~v~~~~~~i~~~ 80 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELG--SD-YVYELDVSKPEHFKSLAESLKKD 80 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcC--Cc-eEEEecCCCHHHHHHHHHHHHHH
Confidence 356888888752 3333 3445589999998887543233333222222 22 56788888621 1
Q ss_pred CCCeeEEEecccccc----------cChhHHH-----------HHHHHHHhcccCCcEEEEEE
Q 024021 172 TELFDLIFDYTFFCA----------IEPEMRA-----------AWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 172 ~~~~D~v~~~~~~~~----------~~~~~~~-----------~~l~~~~~~L~pgG~~~~~~ 213 (274)
.+++|+++.+..+.. .+.+.+. .+.+.+...++.+|.++...
T Consensus 81 ~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~is 143 (274)
T PRK08415 81 LGKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDGASVLTLS 143 (274)
T ss_pred cCCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccCCcEEEEe
Confidence 257899888754321 1222221 23455566667778766544
No 483
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=68.01 E-value=45 Score=26.29 Aligned_cols=81 Identities=10% Similarity=0.056 Sum_probs=50.6
Q ss_pred CCCCCeeEEEecccccccCh----------hHHHHHHHHHHhcccCCcEEEEEEccC-CCCCCCCCc-----------cc
Q 024021 170 CPTELFDLIFDYTFFCAIEP----------EMRAAWAQKIKDFLKPDGELITLMFPI-SDHVGGPPY-----------KV 227 (274)
Q Consensus 170 ~~~~~~D~v~~~~~~~~~~~----------~~~~~~l~~~~~~L~pgG~~~~~~~~~-~~~~~~~~~-----------~~ 227 (274)
...++.|+|+.+.++..+.. .++..++.++..+|+++..++..+-.+ .....|.-. ..
T Consensus 46 l~gg~~DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~~allIW~tt~Pv~~~~~ggfl~~~~~~~~~~lr~ 125 (183)
T cd01842 46 LEGGRLDLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPIECLIVWNTAMPVAEEIKGGFLLPELHDLSKSLRY 125 (183)
T ss_pred ecCCceeEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCCccEEEEecCCCCCcCCcCceeccccccccccchh
Confidence 34467899999988866532 345777888888888998877755443 222222100 01
Q ss_pred ----CHHHHHHHHhcCCCcEEEEeecc
Q 024021 228 ----SVSDYEEVLQPMGFQAISIVDNK 250 (274)
Q Consensus 228 ----~~~~~~~~l~~~Gf~~~~~~~~~ 250 (274)
....-.+.++.+||.+.++...-
T Consensus 126 dv~eaN~~A~~va~~~~~dVlDLh~~f 152 (183)
T cd01842 126 DVLEGNFYSATLAKCYGFDVLDLHYHF 152 (183)
T ss_pred HHHHHHHHHHHHHHHcCceeeehHHHH
Confidence 11333566888999998876543
No 484
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=67.96 E-value=51 Score=27.85 Aligned_cols=116 Identities=15% Similarity=0.100 Sum_probs=61.7
Q ss_pred CCCCeEEEEcCCcchhHHHh----hCCC-CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEec
Q 024021 107 LPKGRALVPGCGTGYDVVAM----ASPE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDY 181 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l----~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~ 181 (274)
..+.++|=+|+| ..+..+ +..| .+|+.++.+++..+...+...... .+.+ ..+.. .....+|+|+..
T Consensus 121 ~~~k~vlVlGaG--g~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~---~~~~-~~~~~--~~~~~~DivIna 192 (278)
T PRK00258 121 LKGKRILILGAG--GAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALG---KAEL-DLELQ--EELADFDLIINA 192 (278)
T ss_pred CCCCEEEEEcCc--HHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcc---ceee-cccch--hccccCCEEEEC
Confidence 456789999875 444333 3467 689999999876665555443211 1222 11211 112468999987
Q ss_pred ccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEE
Q 024021 182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAI 244 (274)
Q Consensus 182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~ 244 (274)
-.....+......+ ....++++..++=..+.+ ....+.+..++.|..++
T Consensus 193 Tp~g~~~~~~~~~~---~~~~l~~~~~v~DivY~P-----------~~T~ll~~A~~~G~~~~ 241 (278)
T PRK00258 193 TSAGMSGELPLPPL---PLSLLRPGTIVYDMIYGP-----------LPTPFLAWAKAQGARTI 241 (278)
T ss_pred CcCCCCCCCCCCCC---CHHHcCCCCEEEEeecCC-----------CCCHHHHHHHHCcCeec
Confidence 55543221000000 113456665554344322 23467777778777653
No 485
>PRK12743 oxidoreductase; Provisional
Probab=67.93 E-value=67 Score=26.35 Aligned_cols=71 Identities=13% Similarity=-0.095 Sum_probs=43.0
Q ss_pred CeEEEEcCCcchhHHHh----hCCCCeEEEEeC-ChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------CCC
Q 024021 110 GRALVPGCGTGYDVVAM----ASPERYVVGLEI-SDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PTE 173 (274)
Q Consensus 110 ~~vLDiG~G~G~~~~~l----~~~~~~v~~vD~-~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~ 173 (274)
+++|=.|++. .++..+ ++.|++|+.+.. +....+.+.......+ .++.++.+|+.+.. ..+
T Consensus 3 k~vlItGas~-giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 79 (256)
T PRK12743 3 QVAIVTASDS-GIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHG--VRAEIRQLDLSDLPEGAQALDKLIQRLG 79 (256)
T ss_pred CEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4678788654 454444 447888887754 4444444444433332 46888999988621 114
Q ss_pred CeeEEEeccc
Q 024021 174 LFDLIFDYTF 183 (274)
Q Consensus 174 ~~D~v~~~~~ 183 (274)
+.|+++.+..
T Consensus 80 ~id~li~~ag 89 (256)
T PRK12743 80 RIDVLVNNAG 89 (256)
T ss_pred CCCEEEECCC
Confidence 6899987654
No 486
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=67.82 E-value=24 Score=30.99 Aligned_cols=92 Identities=24% Similarity=0.155 Sum_probs=49.2
Q ss_pred CCCCeEEEEcCCc-chhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEE-c---ccCCCCCCCCeeEEEe
Q 024021 107 LPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLK-A---DFFTWCPTELFDLIFD 180 (274)
Q Consensus 107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~-~---d~~~~~~~~~~D~v~~ 180 (274)
.++.+||-.|+|. |..+..+++ .|+++++++.+++....+.+.. +. ..++. . ++.... +.+|+|+.
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~---Ga---~~vi~~~~~~~~~~~~--~~~D~vid 253 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRL---GA---DSFLVSTDPEKMKAAI--GTMDYIID 253 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhC---CC---cEEEcCCCHHHHHhhc--CCCCEEEE
Confidence 3567787787642 233344444 6888888888765433322221 11 01111 0 111111 24888884
Q ss_pred cccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021 181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (274)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 214 (274)
.-. . ...+....++|++||.++....
T Consensus 254 ~~g----~----~~~~~~~~~~l~~~G~iv~vG~ 279 (360)
T PLN02586 254 TVS----A----VHALGPLLGLLKVNGKLITLGL 279 (360)
T ss_pred CCC----C----HHHHHHHHHHhcCCcEEEEeCC
Confidence 221 1 1245678889999999887643
No 487
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=67.74 E-value=53 Score=28.22 Aligned_cols=100 Identities=17% Similarity=0.037 Sum_probs=51.2
Q ss_pred CCeEEEEcCCc--chhHHHhhCCCCeEEEEeCChHHHHHHHHHh-hcCCCCcceEEEEcccCC-CCCCCCeeEEEecccc
Q 024021 109 KGRALVPGCGT--GYDVVAMASPERYVVGLEISDIAIKKAEELS-SSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFF 184 (274)
Q Consensus 109 ~~~vLDiG~G~--G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~-~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~~~~ 184 (274)
.++|+=+|+|. |.++..|++.|..|+.+..++. +..+.+. ..........+....... ......+|+|+..--.
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~ 82 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY--EAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLVGLKT 82 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH--HHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEEEecC
Confidence 36788888774 2334455667888888887652 2222111 000000111111111111 1123568988853222
Q ss_pred cccChhHHHHHHHHHHhcccCCcEEEEEEcc
Q 024021 185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFP 215 (274)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 215 (274)
. ....+++.+...+++++.++....+
T Consensus 83 ~-----~~~~~~~~l~~~~~~~~~iv~lqNG 108 (313)
T PRK06249 83 T-----ANALLAPLIPQVAAPDAKVLLLQNG 108 (313)
T ss_pred C-----ChHhHHHHHhhhcCCCCEEEEecCC
Confidence 2 2245677888889999987765543
No 488
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=67.56 E-value=11 Score=31.71 Aligned_cols=94 Identities=19% Similarity=0.211 Sum_probs=53.8
Q ss_pred CCCCeEEEEcC--CcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC----CCCCCCeeEEE
Q 024021 107 LPKGRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLIF 179 (274)
Q Consensus 107 ~~~~~vLDiG~--G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~----~~~~~~~D~v~ 179 (274)
.++.+|+-.|| +.|..+..+++ .|..+++++.++...+.++... ...-+.....+... ......+|+++
T Consensus 138 ~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g----~~~~~~~~~~~~~~~i~~~~~~~~~d~v~ 213 (323)
T cd08241 138 QPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLALARALG----ADHVIDYRDPDLRERVKALTGGRGVDVVY 213 (323)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHHcC----CceeeecCCccHHHHHHHHcCCCCcEEEE
Confidence 34678999987 34444444444 6889999999888777775421 10001111111111 12334689888
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021 180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 213 (274)
.... . ..+..+.+.++++|.++...
T Consensus 214 ~~~g-----~----~~~~~~~~~~~~~g~~v~~~ 238 (323)
T cd08241 214 DPVG-----G----DVFEASLRSLAWGGRLLVIG 238 (323)
T ss_pred ECcc-----H----HHHHHHHHhhccCCEEEEEc
Confidence 5321 1 13456678889999887654
No 489
>PRK06194 hypothetical protein; Provisional
Probab=67.26 E-value=31 Score=28.86 Aligned_cols=73 Identities=15% Similarity=0.017 Sum_probs=47.0
Q ss_pred CCeEEEEcCCcchhHHH----hhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----------CC
Q 024021 109 KGRALVPGCGTGYDVVA----MASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------TE 173 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~----l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-----------~~ 173 (274)
++++|=.|++ |..+.. +++.|++|+.+|.+++..+.........+ .++.++.+|+.+... .+
T Consensus 6 ~k~vlVtGas-ggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~d~~~~~~~~~~~~~~~g 82 (287)
T PRK06194 6 GKVAVITGAA-SGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQG--AEVLGVRTDVSDAAQVEALADAALERFG 82 (287)
T ss_pred CCEEEEeCCc-cHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 4678866654 444443 44589999999998776665554443322 358889999976210 13
Q ss_pred CeeEEEecccc
Q 024021 174 LFDLIFDYTFF 184 (274)
Q Consensus 174 ~~D~v~~~~~~ 184 (274)
+.|+|+.+...
T Consensus 83 ~id~vi~~Ag~ 93 (287)
T PRK06194 83 AVHLLFNNAGV 93 (287)
T ss_pred CCCEEEECCCC
Confidence 57999987554
No 490
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=67.23 E-value=15 Score=32.15 Aligned_cols=92 Identities=17% Similarity=0.257 Sum_probs=52.0
Q ss_pred CCCCeEEEEcCC-cchhHHHhhC-CCCe-EEEEeCChHHHHHHHHHhhcCCCCcceEEEEc---ccC----CCCCCCCee
Q 024021 107 LPKGRALVPGCG-TGYDVVAMAS-PERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKA---DFF----TWCPTELFD 176 (274)
Q Consensus 107 ~~~~~vLDiG~G-~G~~~~~l~~-~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~---d~~----~~~~~~~~D 176 (274)
.++.+||=.|+| .|..+..+++ .|.. +++++.+++..+.+++.. . ..++.. +.. .......+|
T Consensus 186 ~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~~g-~------~~v~~~~~~~~~~~l~~~~~~~~~d 258 (367)
T cd08263 186 RPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKELG-A------THTVNAAKEDAVAAIREITGGRGVD 258 (367)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhC-C------ceEecCCcccHHHHHHHHhCCCCCC
Confidence 345677766543 3333344444 6776 999998888877775432 1 111111 111 122335689
Q ss_pred EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021 177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 177 ~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 213 (274)
+|+.. .... ..+..+.++|+++|.++...
T Consensus 259 ~vld~-----vg~~---~~~~~~~~~l~~~G~~v~~g 287 (367)
T cd08263 259 VVVEA-----LGKP---ETFKLALDVVRDGGRAVVVG 287 (367)
T ss_pred EEEEe-----CCCH---HHHHHHHHHHhcCCEEEEEc
Confidence 99842 1111 24567888999999988764
No 491
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=67.11 E-value=23 Score=28.23 Aligned_cols=79 Identities=14% Similarity=0.083 Sum_probs=50.9
Q ss_pred CCcchhHHHhhC----CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC----CCCeeEEEeccccccc-
Q 024021 117 CGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP----TELFDLIFDYTFFCAI- 187 (274)
Q Consensus 117 ~G~G~~~~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~D~v~~~~~~~~~- 187 (274)
|.+|..+..+++ +|.+|+++=-++.-+..- ..+++++.|++++.. -..||+|++..-...-
T Consensus 7 gAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~----------~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~~~~~ 76 (211)
T COG2910 7 GASGKAGSRILKEALKRGHEVTAIVRNASKLAAR----------QGVTILQKDIFDLTSLASDLAGHDAVISAFGAGASD 76 (211)
T ss_pred ecCchhHHHHHHHHHhCCCeeEEEEeChHhcccc----------ccceeecccccChhhhHhhhcCCceEEEeccCCCCC
Confidence 457777666654 899999998877632211 347889999988432 2479999986544422
Q ss_pred ChhHHHHHHHHHHhcccC
Q 024021 188 EPEMRAAWAQKIKDFLKP 205 (274)
Q Consensus 188 ~~~~~~~~l~~~~~~L~p 205 (274)
++.......+.+...|+.
T Consensus 77 ~~~~~~k~~~~li~~l~~ 94 (211)
T COG2910 77 NDELHSKSIEALIEALKG 94 (211)
T ss_pred hhHHHHHHHHHHHHHHhh
Confidence 223334456677777776
No 492
>PRK07478 short chain dehydrogenase; Provisional
Probab=67.10 E-value=35 Score=27.93 Aligned_cols=74 Identities=14% Similarity=0.013 Sum_probs=48.5
Q ss_pred CCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------CCC
Q 024021 108 PKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PTE 173 (274)
Q Consensus 108 ~~~~vLDiG~G~G~---~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~ 173 (274)
.++++|=.|++.|. .+..+++.|++|+.++.++..++.........+ .++.++.+|+.+.. ..+
T Consensus 5 ~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (254)
T PRK07478 5 NGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEG--GEAVALAGDVRDEAYAKALVALAVERFG 82 (254)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence 35678877765442 233445589999999998877766655554333 45788889987621 113
Q ss_pred CeeEEEeccc
Q 024021 174 LFDLIFDYTF 183 (274)
Q Consensus 174 ~~D~v~~~~~ 183 (274)
+.|+++.+..
T Consensus 83 ~id~li~~ag 92 (254)
T PRK07478 83 GLDIAFNNAG 92 (254)
T ss_pred CCCEEEECCC
Confidence 6898887654
No 493
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=67.02 E-value=71 Score=26.33 Aligned_cols=101 Identities=14% Similarity=0.048 Sum_probs=58.5
Q ss_pred CCCeEEEEcCC-cchhHHH----hhCCCCeEEEEeCCh--HHHHHHHHHhhcCCCCcceEEEEcccCCCC----------
Q 024021 108 PKGRALVPGCG-TGYDVVA----MASPERYVVGLEISD--IAIKKAEELSSSLPNAKFVSFLKADFFTWC---------- 170 (274)
Q Consensus 108 ~~~~vLDiG~G-~G~~~~~----l~~~~~~v~~vD~~~--~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---------- 170 (274)
.++++|-.|+| ++..+.. +++.|++|+.++.+. +..+....... .++.++.+|+.+..
T Consensus 6 ~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~i~~~~~~~~ 80 (256)
T PRK07889 6 EGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRLP-----EPAPVLELDVTNEEHLASLADRVR 80 (256)
T ss_pred cCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhcC-----CCCcEEeCCCCCHHHHHHHHHHHH
Confidence 45788999984 4555444 444789999888653 33333333221 24667888987621
Q ss_pred -CCCCeeEEEecccccc-------c---ChhHH-----------HHHHHHHHhcccCCcEEEEEE
Q 024021 171 -PTELFDLIFDYTFFCA-------I---EPEMR-----------AAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 171 -~~~~~D~v~~~~~~~~-------~---~~~~~-----------~~~l~~~~~~L~pgG~~~~~~ 213 (274)
..+++|+++.+..+.. + +.+.+ -.+.+.+...++++|.++...
T Consensus 81 ~~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~g~Iv~is 145 (256)
T PRK07889 81 EHVDGLDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNEGGSIVGLD 145 (256)
T ss_pred HHcCCCcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhcccCceEEEEe
Confidence 1257899888754321 1 11221 123355666677788776654
No 494
>PRK08655 prephenate dehydrogenase; Provisional
Probab=66.76 E-value=41 Score=30.67 Aligned_cols=86 Identities=13% Similarity=0.067 Sum_probs=44.8
Q ss_pred eEEEEc-CC-cch-hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccccc
Q 024021 111 RALVPG-CG-TGY-DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAI 187 (274)
Q Consensus 111 ~vLDiG-~G-~G~-~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~ 187 (274)
+|.=+| +| .|. ++..+.+.|.+|+++|.+++........ .+ +.+ ..+..+. ....|+|+..-
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~---~g----v~~-~~~~~e~--~~~aDvVIlav----- 66 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKE---LG----VEY-ANDNIDA--AKDADIVIISV----- 66 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHH---cC----Cee-ccCHHHH--hccCCEEEEec-----
Confidence 466676 34 333 2334445788999999987664322221 11 211 1121111 13468887533
Q ss_pred ChhHHHHHHHHHHhcccCCcEEEE
Q 024021 188 EPEMRAAWAQKIKDFLKPDGELIT 211 (274)
Q Consensus 188 ~~~~~~~~l~~~~~~L~pgG~~~~ 211 (274)
|......++..+...+++|..++-
T Consensus 67 p~~~~~~vl~~l~~~l~~~~iViD 90 (437)
T PRK08655 67 PINVTEDVIKEVAPHVKEGSLLMD 90 (437)
T ss_pred CHHHHHHHHHHHHhhCCCCCEEEE
Confidence 333445667777777777765443
No 495
>PRK08703 short chain dehydrogenase; Provisional
Probab=66.75 E-value=42 Score=27.17 Aligned_cols=75 Identities=15% Similarity=0.010 Sum_probs=44.9
Q ss_pred CCCCeEEEEcCCcchhHH----HhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC------------
Q 024021 107 LPKGRALVPGCGTGYDVV----AMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC------------ 170 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~----~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~------------ 170 (274)
.+++++|-.||+ |.++. .+++.|.+|++++.++...+.....+...+. ..+.++..|+.+..
T Consensus 4 l~~k~vlItG~s-ggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~i~ 81 (239)
T PRK08703 4 LSDKTILVTGAS-QGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAGH-PEPFAIRFDLMSAEEKEFEQFAATIA 81 (239)
T ss_pred CCCCEEEEECCC-CcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcCC-CCcceEEeeecccchHHHHHHHHHHH
Confidence 345788888864 44443 4445789999999988766655444432211 23556667764311
Q ss_pred --CCCCeeEEEeccc
Q 024021 171 --PTELFDLIFDYTF 183 (274)
Q Consensus 171 --~~~~~D~v~~~~~ 183 (274)
..+.+|+|+.+..
T Consensus 82 ~~~~~~id~vi~~ag 96 (239)
T PRK08703 82 EATQGKLDGIVHCAG 96 (239)
T ss_pred HHhCCCCCEEEEecc
Confidence 1145798886654
No 496
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=66.61 E-value=80 Score=26.77 Aligned_cols=93 Identities=16% Similarity=0.080 Sum_probs=55.5
Q ss_pred CeEEEEcCCcchh--HHHhhCCCCeEEEEeCChHHHHHHHHHhhc-------CCC-C--------cceEEEEcccCCCCC
Q 024021 110 GRALVPGCGTGYD--VVAMASPERYVVGLEISDIAIKKAEELSSS-------LPN-A--------KFVSFLKADFFTWCP 171 (274)
Q Consensus 110 ~~vLDiG~G~G~~--~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~-------~~~-~--------~~~~~~~~d~~~~~~ 171 (274)
.+|.=||+|.=.. +..++..|..|+.+|.+++.++.+.+.... .+. . .++++ ..|.. .
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~-~-- 80 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARIST-ATDLE-D-- 80 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEe-eCCHH-H--
Confidence 4677788875433 344555889999999999998876543221 111 0 11222 12221 1
Q ss_pred CCCeeEEEecccccccCh--hHHHHHHHHHHhcccCCcEEEE
Q 024021 172 TELFDLIFDYTFFCAIEP--EMRAAWAQKIKDFLKPDGELIT 211 (274)
Q Consensus 172 ~~~~D~v~~~~~~~~~~~--~~~~~~l~~~~~~L~pgG~~~~ 211 (274)
-...|+|+.. ++. .....++..+...++++.+++.
T Consensus 81 ~~~aD~Viea-----vpe~~~~k~~~~~~l~~~~~~~~ii~s 117 (292)
T PRK07530 81 LADCDLVIEA-----ATEDETVKRKIFAQLCPVLKPEAILAT 117 (292)
T ss_pred hcCCCEEEEc-----CcCCHHHHHHHHHHHHhhCCCCcEEEE
Confidence 2357888843 322 3345777889999999887654
No 497
>PRK09186 flagellin modification protein A; Provisional
Probab=66.58 E-value=34 Score=27.98 Aligned_cols=73 Identities=16% Similarity=0.109 Sum_probs=46.0
Q ss_pred CCeEEEEcCCcchhHH----HhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----------CC
Q 024021 109 KGRALVPGCGTGYDVV----AMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------TE 173 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~----~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-----------~~ 173 (274)
+++||=.|++. ..+. .+++.|++|++++.+++.++.....+........+.++.+|+.+... -+
T Consensus 4 ~k~vlItGas~-giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~ 82 (256)
T PRK09186 4 GKTILITGAGG-LIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEKYG 82 (256)
T ss_pred CCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHHcC
Confidence 56788888754 3443 44458899999998887776665554222112346777889876210 13
Q ss_pred CeeEEEecc
Q 024021 174 LFDLIFDYT 182 (274)
Q Consensus 174 ~~D~v~~~~ 182 (274)
..|+++.+.
T Consensus 83 ~id~vi~~A 91 (256)
T PRK09186 83 KIDGAVNCA 91 (256)
T ss_pred CccEEEECC
Confidence 479998764
No 498
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=66.48 E-value=73 Score=26.29 Aligned_cols=74 Identities=19% Similarity=0.093 Sum_probs=41.7
Q ss_pred CCCeEEEEcCC-cchhHHHh----hCCCCeEEEEeCChH---HHHHHHHHhhcCCCCcceEEEEcccCCCC---------
Q 024021 108 PKGRALVPGCG-TGYDVVAM----ASPERYVVGLEISDI---AIKKAEELSSSLPNAKFVSFLKADFFTWC--------- 170 (274)
Q Consensus 108 ~~~~vLDiG~G-~G~~~~~l----~~~~~~v~~vD~~~~---~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--------- 170 (274)
.++++|=.|++ ++..+..+ ++.|++|+.+..+.+ ..+.+++. .... .++.++..|+.+..
T Consensus 5 ~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~Dl~d~~~v~~~~~~~ 81 (258)
T PRK07370 5 TGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVREL-TEPL--NPSLFLPCDVQDDAQIEETFETI 81 (258)
T ss_pred CCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccchHHHHHHHH-Hhcc--CcceEeecCcCCHHHHHHHHHHH
Confidence 45788999974 45555444 458888877754322 11222222 1111 23567788887621
Q ss_pred --CCCCeeEEEecccc
Q 024021 171 --PTELFDLIFDYTFF 184 (274)
Q Consensus 171 --~~~~~D~v~~~~~~ 184 (274)
..+++|+++.+..+
T Consensus 82 ~~~~g~iD~lv~nag~ 97 (258)
T PRK07370 82 KQKWGKLDILVHCLAF 97 (258)
T ss_pred HHHcCCCCEEEEcccc
Confidence 12468998877543
No 499
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=66.05 E-value=16 Score=31.16 Aligned_cols=94 Identities=23% Similarity=0.257 Sum_probs=53.0
Q ss_pred CCCCeEEEEcCC--cchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC----CCCCCCeeEEE
Q 024021 107 LPKGRALVPGCG--TGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLIF 179 (274)
Q Consensus 107 ~~~~~vLDiG~G--~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~----~~~~~~~D~v~ 179 (274)
.++.++|-.|++ .|..+..++. .|.+++.++.++...+.++... ....+.....+... ......+|+++
T Consensus 165 ~~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 240 (342)
T cd08266 165 RPGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLERAKELG----ADYVIDYRKEDFVREVRELTGKRGVDVVV 240 (342)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcC----CCeEEecCChHHHHHHHHHhCCCCCcEEE
Confidence 345688888875 4445444444 7889999999887777664321 10001111101101 12234689888
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021 180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 213 (274)
....- ..+..+.+.++++|.++...
T Consensus 241 ~~~g~---------~~~~~~~~~l~~~G~~v~~~ 265 (342)
T cd08266 241 EHVGA---------ATWEKSLKSLARGGRLVTCG 265 (342)
T ss_pred ECCcH---------HHHHHHHHHhhcCCEEEEEe
Confidence 54321 23456677889999887654
No 500
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=65.88 E-value=79 Score=26.46 Aligned_cols=137 Identities=15% Similarity=0.137 Sum_probs=88.3
Q ss_pred CCccHHHHHHHhcC--CCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-
Q 024021 92 GQPAPIIVHLHQSG--ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT- 168 (274)
Q Consensus 92 ~~~~~~~~~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~- 168 (274)
...-+.+..++... ..++.+ |..=||+-.++..+.+..=++..+|+-|.-....+.++... .++.+..+|-+.
T Consensus 71 ~~lpa~l~~yl~~i~~lN~~~~-l~~YpGSP~lA~~llR~qDRl~l~ELHp~D~~~L~~~f~~d---~~vrv~~~DG~~~ 146 (279)
T COG2961 71 ADLPAELEPYLDAVRQLNPGGG-LRYYPGSPLLARQLLREQDRLVLTELHPSDAPLLRNNFAGD---RRVRVLRGDGFLA 146 (279)
T ss_pred CCchHHHHHHHHHHHHhCCCCC-cccCCCCHHHHHHHcchhceeeeeecCccHHHHHHHHhCCC---cceEEEecCcHHH
Confidence 33344455555433 223333 78889999999999887779999999999999888888643 579999999876
Q ss_pred ----CCCCCCeeEEEecccccccChhHHHHHHHHHHhcccC--CcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCc
Q 024021 169 ----WCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKP--DGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQ 242 (274)
Q Consensus 169 ----~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~p--gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 242 (274)
.+|.++=-+|+....++.- ++.+.+++.+.+.++. +|... .-++..+. -....+.+-++..|..
T Consensus 147 l~a~LPP~erRglVLIDPPfE~~--~eY~rvv~~l~~~~kRf~~g~ya-iWYPik~r-------~~~~~f~~~L~~~~i~ 216 (279)
T COG2961 147 LKAHLPPKERRGLVLIDPPFELK--DEYQRVVEALAEAYKRFATGTYA-IWYPIKDR-------RQIRRFLRALEALGIR 216 (279)
T ss_pred HhhhCCCCCcceEEEeCCCcccc--cHHHHHHHHHHHHHHhhcCceEE-EEEeecch-------HHHHHHHHHHhhcCcc
Confidence 3445556778877777743 3445666666666643 44332 23333211 1345666667776763
Done!