Query 024022
Match_columns 274
No_of_seqs 172 out of 1183
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 08:21:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024022.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024022hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0031 CysK Cysteine synthase 100.0 5.2E-65 1.1E-69 441.3 30.0 262 9-272 3-266 (300)
2 PLN03013 cysteine synthase 100.0 9.8E-64 2.1E-68 456.0 30.8 268 6-273 112-379 (429)
3 PLN02565 cysteine synthase 100.0 4.1E-63 9E-68 443.0 31.2 268 6-273 4-271 (322)
4 PLN02556 cysteine synthase/L-3 100.0 1.3E-61 2.7E-66 439.5 30.4 268 6-273 48-315 (368)
5 PLN00011 cysteine synthase 100.0 4.2E-61 9E-66 431.1 32.0 273 1-273 1-273 (323)
6 TIGR01136 cysKM cysteine synth 100.0 3.5E-60 7.5E-65 421.6 30.5 261 12-273 2-262 (299)
7 PRK11761 cysM cysteine synthas 100.0 3.7E-60 8.1E-65 420.0 28.8 258 7-273 2-259 (296)
8 TIGR01139 cysK cysteine syntha 100.0 1.1E-59 2.3E-64 418.3 30.6 260 12-273 2-262 (298)
9 TIGR01138 cysM cysteine syntha 100.0 4.1E-59 9E-64 412.4 29.4 254 11-273 2-255 (290)
10 COG1171 IlvA Threonine dehydra 100.0 9.9E-60 2.2E-64 415.2 23.2 263 4-273 12-287 (347)
11 PRK10717 cysteine synthase A; 100.0 3E-58 6.5E-63 414.4 30.6 266 7-273 3-281 (330)
12 PLN02356 phosphateglycerate ki 100.0 2.9E-58 6.3E-63 419.9 29.4 267 6-273 42-366 (423)
13 cd01561 CBS_like CBS_like: Thi 100.0 1.1E-57 2.4E-62 404.2 30.7 256 16-273 1-259 (291)
14 KOG1252 Cystathionine beta-syn 100.0 1.1E-58 2.4E-63 400.0 20.0 268 6-273 41-313 (362)
15 PRK08526 threonine dehydratase 100.0 6.3E-58 1.4E-62 420.2 23.5 262 3-273 6-279 (403)
16 PLN02970 serine racemase 100.0 1.3E-57 2.9E-62 409.3 24.7 261 4-273 14-285 (328)
17 PRK06382 threonine dehydratase 100.0 1.6E-57 3.4E-62 419.5 24.5 262 3-273 11-284 (406)
18 PRK07476 eutB threonine dehydr 100.0 2E-57 4.3E-62 407.5 23.5 262 3-273 5-280 (322)
19 TIGR02991 ectoine_eutB ectoine 100.0 5.1E-57 1.1E-61 403.5 25.1 262 3-273 5-280 (317)
20 TIGR01137 cysta_beta cystathio 100.0 2E-56 4.4E-61 418.9 28.7 264 8-273 2-274 (454)
21 PRK08198 threonine dehydratase 100.0 5.2E-57 1.1E-61 416.6 24.2 262 3-273 8-281 (404)
22 PRK08638 threonine dehydratase 100.0 1E-56 2.3E-61 403.4 24.8 260 4-273 14-286 (333)
23 PRK12483 threonine dehydratase 100.0 1.3E-56 2.7E-61 420.6 25.8 256 10-273 30-297 (521)
24 TIGR02079 THD1 threonine dehyd 100.0 1.1E-56 2.5E-61 413.5 24.2 262 4-273 3-279 (409)
25 cd06447 D-Ser-dehyd D-Serine d 100.0 2.1E-56 4.5E-61 407.8 25.0 256 15-273 50-362 (404)
26 cd06448 L-Ser-dehyd Serine deh 100.0 3E-56 6.5E-61 398.4 25.3 253 17-273 1-268 (316)
27 PRK07048 serine/threonine dehy 100.0 2E-56 4.2E-61 401.1 23.6 262 3-273 10-283 (321)
28 PRK07334 threonine dehydratase 100.0 1.8E-56 3.9E-61 412.3 22.8 262 3-273 9-280 (403)
29 PRK08639 threonine dehydratase 100.0 2.2E-56 4.8E-61 413.3 23.3 265 3-273 11-290 (420)
30 PRK06110 hypothetical protein; 100.0 3.3E-56 7.1E-61 399.6 23.5 261 4-273 8-280 (322)
31 PLN02550 threonine dehydratase 100.0 7.1E-56 1.5E-60 417.8 24.5 256 10-273 102-369 (591)
32 PRK08813 threonine dehydratase 100.0 1.1E-55 2.4E-60 396.4 24.4 252 3-273 25-287 (349)
33 PRK06608 threonine dehydratase 100.0 1.2E-55 2.7E-60 397.2 24.4 262 3-273 9-282 (338)
34 PRK06815 hypothetical protein; 100.0 1.1E-55 2.4E-60 395.4 23.5 262 3-273 6-280 (317)
35 TIGR01124 ilvA_2Cterm threonin 100.0 1.7E-55 3.6E-60 413.1 25.6 257 9-273 9-277 (499)
36 TIGR01127 ilvA_1Cterm threonin 100.0 1E-55 2.2E-60 405.1 23.0 247 18-273 1-259 (380)
37 PRK02991 D-serine dehydratase; 100.0 3.2E-55 6.9E-60 404.5 25.5 256 15-273 73-385 (441)
38 cd01562 Thr-dehyd Threonine de 100.0 3.4E-55 7.3E-60 390.6 23.6 262 3-273 3-276 (304)
39 TIGR02035 D_Ser_am_lyase D-ser 100.0 1E-54 2.2E-59 399.7 27.0 257 14-273 67-380 (431)
40 PRK08246 threonine dehydratase 100.0 7.9E-55 1.7E-59 388.5 24.1 256 3-273 9-276 (310)
41 PRK09224 threonine dehydratase 100.0 1E-54 2.3E-59 409.2 25.4 257 9-273 12-280 (504)
42 PRK06352 threonine synthase; V 100.0 6E-55 1.3E-59 395.1 21.9 255 9-273 20-288 (351)
43 KOG1250 Threonine/serine dehyd 100.0 3E-54 6.5E-59 378.1 22.0 261 5-273 54-326 (457)
44 PRK08197 threonine synthase; V 100.0 7.5E-54 1.6E-58 393.8 24.0 255 10-273 72-351 (394)
45 PRK06721 threonine synthase; R 100.0 2.6E-53 5.7E-58 384.7 25.7 255 8-273 19-288 (352)
46 PRK07591 threonine synthase; V 100.0 1.7E-53 3.6E-58 393.8 24.6 256 10-273 82-361 (421)
47 PRK07409 threonine synthase; V 100.0 2.6E-53 5.5E-58 385.4 25.0 254 9-273 23-292 (353)
48 cd01563 Thr-synth_1 Threonine 100.0 3.5E-53 7.5E-58 380.8 24.9 255 9-273 14-292 (324)
49 PRK06381 threonine synthase; V 100.0 4.1E-53 8.8E-58 379.5 24.7 253 12-273 10-291 (319)
50 PRK06450 threonine synthase; V 100.0 1.6E-52 3.5E-57 376.6 25.5 240 10-273 51-312 (338)
51 PRK08329 threonine synthase; V 100.0 2.8E-52 6.1E-57 377.3 25.7 245 11-273 58-314 (347)
52 PRK06260 threonine synthase; V 100.0 1.6E-52 3.5E-57 385.3 23.9 254 9-273 59-338 (397)
53 KOG1251 Serine racemase [Signa 100.0 9.3E-53 2E-57 347.9 19.2 263 2-273 10-284 (323)
54 PLN02569 threonine synthase 100.0 5.8E-52 1.3E-56 386.8 25.6 257 10-273 126-409 (484)
55 PRK08206 diaminopropionate amm 100.0 3.7E-52 7.9E-57 382.2 23.7 265 5-273 30-345 (399)
56 PRK05638 threonine synthase; V 100.0 8.1E-51 1.8E-55 378.6 25.3 251 10-273 59-326 (442)
57 cd00640 Trp-synth-beta_II Tryp 100.0 4.9E-50 1.1E-54 346.8 26.7 217 18-273 1-218 (244)
58 TIGR00260 thrC threonine synth 100.0 1.1E-49 2.4E-54 358.6 23.0 254 9-273 15-294 (328)
59 TIGR01747 diampropi_NH3ly diam 100.0 1.4E-49 3E-54 361.7 22.9 264 5-273 11-326 (376)
60 KOG1481 Cysteine synthase [Ami 100.0 1.5E-49 3.2E-54 334.4 18.9 265 8-273 40-332 (391)
61 PRK13028 tryptophan synthase s 100.0 3E-48 6.4E-53 354.0 27.3 260 9-273 53-359 (402)
62 cd06446 Trp-synth_B Tryptophan 100.0 3.5E-48 7.5E-53 352.8 27.0 263 5-273 21-331 (365)
63 TIGR03528 2_3_DAP_am_ly diamin 100.0 8.1E-49 1.7E-53 359.0 22.7 262 7-273 32-345 (396)
64 TIGR01415 trpB_rel pyridoxal-p 100.0 5.1E-48 1.1E-52 355.2 27.9 259 6-273 57-375 (419)
65 TIGR00263 trpB tryptophan synt 100.0 4.4E-48 9.5E-53 353.9 25.6 261 8-273 40-347 (385)
66 PRK04346 tryptophan synthase s 100.0 9.8E-48 2.1E-52 350.1 26.1 260 9-273 49-355 (397)
67 PRK12391 tryptophan synthase s 100.0 1.9E-47 4.1E-52 351.9 27.9 255 13-273 73-384 (427)
68 PLN02618 tryptophan synthase, 100.0 2.2E-47 4.7E-52 348.5 26.0 262 7-273 55-368 (410)
69 TIGR01275 ACC_deam_rel pyridox 100.0 5.8E-48 1.2E-52 345.1 19.3 251 14-271 4-270 (311)
70 PRK03910 D-cysteine desulfhydr 100.0 6.6E-48 1.4E-52 347.2 19.1 258 8-271 6-287 (331)
71 TIGR03844 cysteate_syn cysteat 100.0 1.5E-47 3.2E-52 350.6 21.2 252 13-273 58-350 (398)
72 PRK12390 1-aminocyclopropane-1 100.0 1.8E-47 3.9E-52 345.1 19.6 260 6-271 4-293 (337)
73 PRK13802 bifunctional indole-3 100.0 1.9E-46 4.1E-51 359.5 27.5 260 9-273 317-631 (695)
74 PF00291 PALP: Pyridoxal-phosp 100.0 3.5E-47 7.5E-52 338.9 20.6 251 11-273 1-277 (306)
75 cd06449 ACCD Aminocyclopropane 100.0 4.1E-47 9E-52 338.9 19.2 248 18-271 1-276 (307)
76 TIGR01274 ACC_deam 1-aminocycl 100.0 7E-47 1.5E-51 341.2 20.9 259 7-271 4-292 (337)
77 PRK14045 1-aminocyclopropane-1 100.0 1.7E-45 3.6E-50 331.2 18.5 260 5-272 9-287 (329)
78 PRK13803 bifunctional phosphor 100.0 1.2E-44 2.5E-49 347.5 25.2 260 9-273 262-567 (610)
79 COG0498 ThrC Threonine synthas 100.0 7.4E-41 1.6E-45 303.9 19.8 254 10-273 69-344 (411)
80 COG0133 TrpB Tryptophan syntha 100.0 1.7E-31 3.7E-36 229.2 19.7 254 11-269 49-348 (396)
81 COG2515 Acd 1-aminocyclopropan 100.0 6.2E-32 1.3E-36 231.3 16.0 260 5-270 3-280 (323)
82 PRK09225 threonine synthase; V 100.0 4.7E-30 1E-34 238.1 21.6 241 17-273 88-387 (462)
83 cd01560 Thr-synth_2 Threonine 100.0 5E-29 1.1E-33 231.4 22.8 241 18-273 88-390 (460)
84 COG1350 Predicted alternative 100.0 1.1E-28 2.4E-33 212.4 18.2 264 5-273 66-385 (432)
85 KOG1395 Tryptophan synthase be 99.9 3.1E-26 6.7E-31 198.8 16.7 253 13-270 118-417 (477)
86 COG3048 DsdA D-serine dehydrat 99.9 4.3E-24 9.4E-29 182.6 16.8 256 14-272 75-387 (443)
87 PF03808 Glyco_tran_WecB: Glyc 91.4 1.7 3.7E-05 35.3 8.8 121 80-207 12-133 (172)
88 COG0604 Qor NADPH:quinone redu 87.5 6.3 0.00014 35.5 10.1 57 62-121 137-193 (326)
89 cd08230 glucose_DH Glucose deh 87.5 4.7 0.0001 36.3 9.4 54 65-119 170-223 (355)
90 PF05368 NmrA: NmrA-like famil 86.9 14 0.00031 30.9 11.6 50 72-122 2-51 (233)
91 cd06533 Glyco_transf_WecG_TagA 86.8 7.4 0.00016 31.5 9.3 120 80-207 10-131 (171)
92 PF01041 DegT_DnrJ_EryC1: DegT 86.0 2.1 4.6E-05 39.0 6.3 87 70-156 41-129 (363)
93 TIGR03201 dearomat_had 6-hydro 85.8 12 0.00026 33.7 11.1 58 60-121 159-216 (349)
94 cd08294 leukotriene_B4_DH_like 85.4 12 0.00027 32.8 10.9 58 61-121 137-194 (329)
95 TIGR03366 HpnZ_proposed putati 85.4 7.5 0.00016 33.8 9.3 58 60-120 113-170 (280)
96 TIGR02819 fdhA_non_GSH formald 83.9 17 0.00037 33.5 11.4 56 61-119 179-234 (393)
97 TIGR00696 wecB_tagA_cpsF bacte 81.4 16 0.00035 29.9 9.1 118 81-207 13-132 (177)
98 TIGR02825 B4_12hDH leukotriene 80.4 14 0.00031 32.6 9.3 58 61-121 132-189 (325)
99 TIGR03451 mycoS_dep_FDH mycoth 79.8 22 0.00048 32.0 10.4 58 60-120 169-226 (358)
100 cd08281 liver_ADH_like1 Zinc-d 79.8 23 0.00049 32.2 10.5 57 61-120 185-241 (371)
101 cd08295 double_bond_reductase_ 79.5 26 0.00056 31.2 10.7 57 61-120 145-202 (338)
102 cd01075 NAD_bind_Leu_Phe_Val_D 79.3 26 0.00057 29.1 9.9 66 49-118 6-75 (200)
103 cd08256 Zn_ADH2 Alcohol dehydr 78.6 34 0.00073 30.6 11.2 57 61-120 168-224 (350)
104 COG0159 TrpA Tryptophan syntha 78.6 20 0.00043 31.3 9.1 68 50-122 109-178 (265)
105 PRK09880 L-idonate 5-dehydroge 78.0 24 0.00052 31.6 10.0 58 60-120 162-219 (343)
106 PF09837 DUF2064: Uncharacteri 78.0 28 0.00061 26.5 9.0 98 84-187 2-100 (122)
107 cd08274 MDR9 Medium chain dehy 77.3 27 0.00059 31.0 10.2 57 60-120 170-226 (350)
108 cd08293 PTGR2 Prostaglandin re 77.0 36 0.00079 30.2 10.9 58 62-122 147-208 (345)
109 TIGR02822 adh_fam_2 zinc-bindi 76.7 13 0.00029 33.2 8.0 57 60-120 158-214 (329)
110 PF00107 ADH_zinc_N: Zinc-bind 76.7 15 0.00033 27.5 7.2 32 174-208 58-89 (130)
111 PRK12823 benD 1,6-dihydroxycyc 76.3 31 0.00068 29.2 9.9 72 69-140 9-81 (260)
112 cd08233 butanediol_DH_like (2R 76.2 42 0.0009 30.0 11.1 58 61-121 166-223 (351)
113 KOG0025 Zn2+-binding dehydroge 75.7 16 0.00035 32.5 7.7 87 33-123 124-217 (354)
114 PF00107 ADH_zinc_N: Zinc-bind 75.7 15 0.00033 27.5 7.0 53 80-138 2-54 (130)
115 COG2130 Putative NADP-dependen 75.5 29 0.00063 31.1 9.3 55 61-118 144-199 (340)
116 PLN03154 putative allyl alcoho 75.5 39 0.00084 30.4 10.7 58 61-121 152-210 (348)
117 TIGR03538 DapC_gpp succinyldia 75.5 38 0.00082 31.0 10.8 80 42-123 62-145 (393)
118 TIGR00670 asp_carb_tr aspartat 74.9 19 0.00042 32.1 8.3 51 72-122 153-208 (301)
119 PRK15408 autoinducer 2-binding 74.9 64 0.0014 29.0 17.6 146 54-208 71-242 (336)
120 PF00106 adh_short: short chai 74.5 33 0.00072 26.6 9.0 55 70-124 2-60 (167)
121 COG1751 Uncharacterized conser 74.4 34 0.00074 27.3 8.4 75 43-122 7-90 (186)
122 TIGR01064 pyruv_kin pyruvate k 74.3 71 0.0015 30.5 12.4 124 83-212 261-407 (473)
123 cd08289 MDR_yhfp_like Yhfp put 73.7 28 0.0006 30.5 9.2 49 68-119 147-195 (326)
124 PF01210 NAD_Gly3P_dh_N: NAD-d 73.6 8.8 0.00019 30.5 5.3 42 72-116 2-43 (157)
125 cd08292 ETR_like_2 2-enoyl thi 73.5 38 0.00082 29.6 10.0 56 61-119 133-188 (324)
126 cd08301 alcohol_DH_plants Plan 73.4 28 0.00062 31.4 9.3 57 61-120 181-237 (369)
127 PRK10309 galactitol-1-phosphat 73.3 25 0.00053 31.5 8.8 58 60-120 153-210 (347)
128 cd08239 THR_DH_like L-threonin 73.0 30 0.00065 30.7 9.3 58 60-120 156-213 (339)
129 PRK13394 3-hydroxybutyrate deh 72.5 38 0.00083 28.5 9.5 56 69-124 8-64 (262)
130 PLN02740 Alcohol dehydrogenase 72.4 26 0.00057 32.0 8.9 57 61-120 192-248 (381)
131 PF02826 2-Hacid_dh_C: D-isome 72.4 24 0.00053 28.6 7.8 114 71-209 38-153 (178)
132 cd08277 liver_alcohol_DH_like 72.3 27 0.00059 31.5 9.0 56 61-119 178-233 (365)
133 TIGR00561 pntA NAD(P) transhyd 72.2 58 0.0013 31.4 11.2 49 71-122 166-214 (511)
134 PRK09424 pntA NAD(P) transhydr 72.1 19 0.00041 34.7 8.0 52 67-122 164-215 (509)
135 KOG0024 Sorbitol dehydrogenase 72.0 22 0.00048 32.1 7.7 62 58-122 160-221 (354)
136 cd08300 alcohol_DH_class_III c 71.8 26 0.00057 31.7 8.7 57 61-120 180-236 (368)
137 TIGR02818 adh_III_F_hyde S-(hy 71.2 34 0.00073 31.1 9.3 57 61-120 179-235 (368)
138 cd08296 CAD_like Cinnamyl alco 71.0 50 0.0011 29.3 10.2 53 64-120 160-212 (333)
139 PRK12771 putative glutamate sy 71.0 11 0.00023 36.7 6.2 55 66-121 135-207 (564)
140 cd08287 FDH_like_ADH3 formalde 70.9 65 0.0014 28.5 11.0 53 62-117 163-215 (345)
141 PF04127 DFP: DNA / pantothena 70.8 38 0.00082 27.9 8.6 59 74-141 25-83 (185)
142 KOG0023 Alcohol dehydrogenase, 70.6 23 0.0005 31.9 7.6 61 59-123 174-234 (360)
143 cd08297 CAD3 Cinnamyl alcohol 70.6 48 0.001 29.3 10.1 53 64-119 162-214 (341)
144 PRK13656 trans-2-enoyl-CoA red 70.5 92 0.002 29.0 11.7 57 40-99 14-73 (398)
145 PRK08628 short chain dehydroge 70.2 47 0.001 28.1 9.5 56 69-124 8-63 (258)
146 PRK12743 oxidoreductase; Provi 70.2 48 0.001 28.1 9.6 71 70-140 4-77 (256)
147 PRK08993 2-deoxy-D-gluconate 3 69.9 64 0.0014 27.3 10.3 55 69-124 11-65 (253)
148 cd08285 NADP_ADH NADP(H)-depen 69.8 52 0.0011 29.4 10.1 57 60-119 159-215 (351)
149 PRK12481 2-deoxy-D-gluconate 3 69.4 49 0.0011 28.0 9.5 54 69-123 9-62 (251)
150 PF07279 DUF1442: Protein of u 69.3 27 0.00059 29.5 7.4 55 59-116 35-94 (218)
151 TIGR01751 crot-CoA-red crotony 69.3 36 0.00078 31.2 9.1 55 63-120 185-239 (398)
152 PRK06935 2-deoxy-D-gluconate 3 69.3 51 0.0011 27.9 9.6 72 69-140 16-88 (258)
153 COG2518 Pcm Protein-L-isoaspar 69.2 42 0.00091 28.3 8.5 111 52-184 57-171 (209)
154 PRK10754 quinone oxidoreductas 69.2 77 0.0017 27.8 11.0 56 61-119 134-189 (327)
155 PRK07109 short chain dehydroge 69.1 36 0.00077 30.6 8.8 56 69-124 9-65 (334)
156 PF00070 Pyr_redox: Pyridine n 68.8 34 0.00075 23.4 7.9 49 72-120 2-59 (80)
157 cd08231 MDR_TM0436_like Hypoth 68.7 85 0.0018 28.1 11.3 54 62-118 172-225 (361)
158 COG1064 AdhP Zn-dependent alco 68.6 37 0.00079 30.9 8.6 61 58-122 157-217 (339)
159 PRK06348 aspartate aminotransf 68.5 94 0.002 28.3 13.1 50 72-122 92-141 (384)
160 PRK08226 short chain dehydroge 68.3 45 0.00097 28.2 9.0 55 69-123 7-61 (263)
161 cd08288 MDR_yhdh Yhdh putative 67.9 46 0.001 29.1 9.3 51 67-120 146-196 (324)
162 cd08242 MDR_like Medium chain 67.8 48 0.001 29.0 9.4 56 60-119 148-203 (319)
163 PRK15481 transcriptional regul 67.8 79 0.0017 29.3 11.2 80 71-154 143-225 (431)
164 PRK05396 tdh L-threonine 3-deh 67.8 41 0.00089 29.8 9.0 52 66-120 162-213 (341)
165 TIGR01832 kduD 2-deoxy-D-gluco 67.7 61 0.0013 27.1 9.7 55 69-124 6-60 (248)
166 PRK14030 glutamate dehydrogena 67.5 40 0.00088 31.8 9.0 53 48-100 207-259 (445)
167 cd00401 AdoHcyase S-adenosyl-L 67.5 27 0.00058 32.7 7.8 53 63-119 197-249 (413)
168 PTZ00354 alcohol dehydrogenase 67.2 80 0.0017 27.6 10.7 56 63-121 136-191 (334)
169 PF00290 Trp_syntA: Tryptophan 67.1 82 0.0018 27.5 10.3 66 48-118 100-166 (259)
170 PRK06139 short chain dehydroge 67.0 37 0.00079 30.5 8.5 54 69-122 8-62 (330)
171 PRK08589 short chain dehydroge 66.7 46 0.001 28.6 8.8 54 69-122 7-60 (272)
172 PRK12779 putative bifunctional 66.5 48 0.001 34.6 10.1 32 70-101 307-338 (944)
173 PRK08703 short chain dehydroge 66.5 75 0.0016 26.4 10.2 33 69-101 7-39 (239)
174 cd08246 crotonyl_coA_red croto 66.4 27 0.00059 31.9 7.7 55 63-120 189-243 (393)
175 PRK08277 D-mannonate oxidoredu 66.3 54 0.0012 28.1 9.2 55 69-123 11-66 (278)
176 PLN02827 Alcohol dehydrogenase 66.3 53 0.0011 30.0 9.5 57 61-120 187-243 (378)
177 PRK05557 fabG 3-ketoacyl-(acyl 65.3 71 0.0015 26.4 9.6 56 69-124 6-63 (248)
178 COG0399 WecE Predicted pyridox 65.2 56 0.0012 30.2 9.3 55 70-124 50-104 (374)
179 PRK07097 gluconate 5-dehydroge 64.8 56 0.0012 27.8 8.9 56 69-124 11-67 (265)
180 TIGR00692 tdh L-threonine 3-de 64.8 58 0.0012 28.9 9.3 51 65-118 159-209 (340)
181 PRK14807 histidinol-phosphate 64.8 78 0.0017 28.4 10.2 52 72-124 79-130 (351)
182 COG2242 CobL Precorrin-6B meth 64.6 66 0.0014 26.6 8.6 35 177-212 130-164 (187)
183 PRK06114 short chain dehydroge 64.3 87 0.0019 26.4 10.1 55 69-123 9-65 (254)
184 PF00185 OTCace: Aspartate/orn 64.2 22 0.00048 28.4 5.8 46 77-122 12-65 (158)
185 cd08243 quinone_oxidoreductase 64.0 63 0.0014 27.9 9.3 55 63-120 138-192 (320)
186 PRK08063 enoyl-(acyl carrier p 63.8 84 0.0018 26.2 9.8 56 69-124 5-62 (250)
187 PRK07550 hypothetical protein; 63.7 1.2E+02 0.0025 27.6 13.1 76 44-123 67-143 (386)
188 PRK06172 short chain dehydroge 63.6 62 0.0013 27.2 8.9 55 69-123 8-63 (253)
189 PRK05786 fabG 3-ketoacyl-(acyl 63.6 59 0.0013 26.9 8.7 33 69-101 6-38 (238)
190 PRK07523 gluconate 5-dehydroge 63.5 62 0.0013 27.3 9.0 55 69-123 11-66 (255)
191 cd08258 Zn_ADH4 Alcohol dehydr 63.5 1E+02 0.0022 27.0 10.5 54 62-117 159-212 (306)
192 cd08298 CAD2 Cinnamyl alcohol 62.9 56 0.0012 28.7 8.8 54 61-118 161-214 (329)
193 cd08284 FDH_like_2 Glutathione 62.8 56 0.0012 28.9 8.9 53 63-118 163-215 (344)
194 PF02887 PK_C: Pyruvate kinase 62.8 54 0.0012 24.4 7.5 81 52-141 5-87 (117)
195 PRK12937 short chain dehydroge 62.7 87 0.0019 26.0 9.6 56 69-124 6-63 (245)
196 PRK12939 short chain dehydroge 62.3 70 0.0015 26.6 9.0 55 69-123 8-63 (250)
197 cd08240 6_hydroxyhexanoate_dh_ 62.3 1.1E+02 0.0024 27.1 10.8 51 65-118 173-223 (350)
198 PRK08862 short chain dehydroge 62.2 64 0.0014 27.0 8.7 54 69-122 6-60 (227)
199 PRK02610 histidinol-phosphate 61.8 70 0.0015 29.0 9.4 52 72-123 94-145 (374)
200 PRK07478 short chain dehydroge 61.3 71 0.0015 26.9 8.9 72 69-140 7-80 (254)
201 PLN02178 cinnamyl-alcohol dehy 60.8 38 0.00083 30.9 7.5 52 66-120 177-228 (375)
202 PRK07666 fabG 3-ketoacyl-(acyl 60.6 81 0.0018 26.2 9.1 56 69-124 8-64 (239)
203 cd08291 ETR_like_1 2-enoyl thi 60.4 67 0.0015 28.2 8.9 51 69-122 144-195 (324)
204 PRK07454 short chain dehydroge 60.3 79 0.0017 26.3 9.0 55 69-123 7-62 (241)
205 cd08278 benzyl_alcohol_DH Benz 60.3 1.1E+02 0.0024 27.5 10.5 56 62-120 181-236 (365)
206 cd08244 MDR_enoyl_red Possible 60.1 94 0.002 27.0 9.7 56 60-118 135-190 (324)
207 PRK08217 fabG 3-ketoacyl-(acyl 60.1 76 0.0016 26.4 8.8 55 69-123 6-61 (253)
208 cd05282 ETR_like 2-enoyl thioe 60.0 1E+02 0.0023 26.7 10.0 53 62-117 133-185 (323)
209 PRK10083 putative oxidoreducta 59.9 1.1E+02 0.0023 27.1 10.1 58 60-120 153-211 (339)
210 cd08269 Zn_ADH9 Alcohol dehydr 59.9 1.1E+02 0.0025 26.3 11.3 55 61-118 123-177 (312)
211 TIGR02823 oxido_YhdH putative 59.5 75 0.0016 27.7 9.0 53 65-120 142-195 (323)
212 PRK11706 TDP-4-oxo-6-deoxy-D-g 59.4 54 0.0012 29.9 8.3 54 71-124 48-101 (375)
213 PLN02586 probable cinnamyl alc 59.3 66 0.0014 29.1 8.8 55 63-120 179-233 (360)
214 cd08267 MDR1 Medium chain dehy 59.3 77 0.0017 27.3 9.0 52 62-117 138-189 (319)
215 PTZ00079 NADP-specific glutama 59.3 72 0.0016 30.2 9.0 53 48-101 216-269 (454)
216 PF08659 KR: KR domain; Inter 59.2 73 0.0016 25.7 8.2 54 71-124 3-61 (181)
217 PF13561 adh_short_C2: Enoyl-( 59.2 43 0.00093 28.1 7.1 48 76-123 4-53 (241)
218 cd08245 CAD Cinnamyl alcohol d 59.2 76 0.0017 27.8 9.0 56 62-121 157-212 (330)
219 PRK08643 acetoin reductase; Va 59.1 92 0.002 26.2 9.2 55 69-123 3-58 (256)
220 TIGR01316 gltA glutamate synth 59.0 47 0.001 31.3 7.9 51 71-121 274-329 (449)
221 PRK12429 3-hydroxybutyrate deh 58.9 91 0.002 26.0 9.2 56 69-124 5-61 (258)
222 KOG2862 Alanine-glyoxylate ami 58.9 94 0.002 28.1 9.0 85 70-155 69-156 (385)
223 cd05211 NAD_bind_Glu_Leu_Phe_V 58.8 57 0.0012 27.6 7.6 52 50-101 4-55 (217)
224 cd08282 PFDH_like Pseudomonas 58.7 88 0.0019 28.3 9.5 55 61-118 170-224 (375)
225 PRK07792 fabG 3-ketoacyl-(acyl 58.7 1.3E+02 0.0028 26.5 10.3 56 69-124 13-70 (306)
226 PRK08278 short chain dehydroge 58.6 1.2E+02 0.0025 26.1 9.9 55 69-123 7-69 (273)
227 PLN00175 aminotransferase fami 58.3 1.6E+02 0.0034 27.3 13.3 82 72-154 118-200 (413)
228 cd08250 Mgc45594_like Mgc45594 58.2 1.3E+02 0.0028 26.3 10.8 55 62-119 134-188 (329)
229 TIGR02824 quinone_pig3 putativ 58.1 1.2E+02 0.0026 26.0 11.0 57 60-119 132-188 (325)
230 cd08259 Zn_ADH5 Alcohol dehydr 58.0 89 0.0019 27.2 9.2 53 63-118 158-210 (332)
231 PRK09147 succinyldiaminopimela 58.0 1.5E+02 0.0032 27.0 13.8 78 43-123 64-146 (396)
232 PRK06181 short chain dehydroge 58.0 81 0.0018 26.6 8.7 54 70-123 3-57 (263)
233 PRK06128 oxidoreductase; Provi 58.0 1.3E+02 0.0028 26.3 10.2 56 69-124 56-114 (300)
234 PRK05876 short chain dehydroge 58.0 90 0.0019 26.9 9.1 55 69-123 7-62 (275)
235 cd05281 TDH Threonine dehydrog 58.0 74 0.0016 28.2 8.8 52 65-119 161-212 (341)
236 PRK12935 acetoacetyl-CoA reduc 57.7 96 0.0021 25.8 9.1 56 69-124 7-64 (247)
237 PRK07890 short chain dehydroge 57.7 88 0.0019 26.2 8.9 55 69-123 6-61 (258)
238 PRK06702 O-acetylhomoserine am 57.6 1.7E+02 0.0037 27.6 11.3 78 72-154 79-160 (432)
239 PRK09422 ethanol-active dehydr 57.5 1.2E+02 0.0026 26.7 10.0 57 61-121 156-213 (338)
240 TIGR03206 benzo_BadH 2-hydroxy 57.5 87 0.0019 26.1 8.8 56 69-124 4-60 (250)
241 PRK06124 gluconate 5-dehydroge 57.3 87 0.0019 26.3 8.8 56 68-123 11-67 (256)
242 PRK05867 short chain dehydroge 57.2 96 0.0021 26.1 9.0 55 69-123 10-65 (253)
243 PRK12826 3-ketoacyl-(acyl-carr 57.2 94 0.002 25.8 8.9 55 69-123 7-62 (251)
244 cd05285 sorbitol_DH Sorbitol d 57.2 1E+02 0.0022 27.3 9.6 58 60-120 155-212 (343)
245 cd05279 Zn_ADH1 Liver alcohol 57.1 1.3E+02 0.0028 27.1 10.3 54 61-117 177-230 (365)
246 cd08262 Zn_ADH8 Alcohol dehydr 57.1 1E+02 0.0023 27.1 9.6 55 60-117 154-208 (341)
247 PRK09257 aromatic amino acid a 57.0 1.6E+02 0.0034 26.9 11.8 81 40-122 65-148 (396)
248 PRK06194 hypothetical protein; 56.8 1.1E+02 0.0024 26.2 9.5 56 69-124 7-63 (287)
249 PRK08306 dipicolinate synthase 56.6 1.2E+02 0.0026 26.8 9.7 49 67-119 151-199 (296)
250 COG0078 ArgF Ornithine carbamo 56.4 70 0.0015 28.6 7.9 56 68-123 153-214 (310)
251 PRK06182 short chain dehydroge 56.3 1.3E+02 0.0028 25.7 10.8 67 69-139 4-70 (273)
252 PLN02702 L-idonate 5-dehydroge 56.2 1.1E+02 0.0025 27.4 9.8 57 61-120 175-231 (364)
253 cd08299 alcohol_DH_class_I_II_ 56.2 99 0.0022 28.1 9.4 54 61-117 184-237 (373)
254 PF13580 SIS_2: SIS domain; PD 56.0 26 0.00056 27.1 4.8 35 65-99 101-137 (138)
255 COG1063 Tdh Threonine dehydrog 55.9 1.6E+02 0.0034 26.7 14.8 51 71-123 171-222 (350)
256 PRK05653 fabG 3-ketoacyl-(acyl 55.9 1.2E+02 0.0025 25.1 9.5 55 69-123 6-61 (246)
257 PRK05993 short chain dehydroge 55.7 1.3E+02 0.0029 25.7 10.2 52 69-123 5-56 (277)
258 PRK08303 short chain dehydroge 55.6 1.2E+02 0.0026 26.8 9.6 72 69-140 9-92 (305)
259 cd05288 PGDH Prostaglandin deh 55.6 1.4E+02 0.0031 26.0 10.5 53 62-117 140-193 (329)
260 PRK12809 putative oxidoreducta 55.5 46 0.00099 33.0 7.5 52 70-121 311-380 (639)
261 PRK05866 short chain dehydroge 55.4 92 0.002 27.2 8.8 54 70-123 42-96 (293)
262 PRK07035 short chain dehydroge 55.3 1.1E+02 0.0024 25.6 9.1 54 69-122 9-63 (252)
263 cd05280 MDR_yhdh_yhfp Yhdh and 55.3 98 0.0021 26.9 9.0 48 69-119 148-195 (325)
264 cd00288 Pyruvate_Kinase Pyruva 55.1 1.3E+02 0.0028 28.9 10.0 86 46-140 358-449 (480)
265 PF01262 AlaDh_PNT_C: Alanine 54.7 60 0.0013 25.9 6.9 50 71-123 22-71 (168)
266 cd08264 Zn_ADH_like2 Alcohol d 54.6 85 0.0018 27.4 8.5 49 61-116 156-204 (325)
267 KOG1201 Hydroxysteroid 17-beta 54.5 1.6E+02 0.0035 26.3 10.9 74 68-142 38-113 (300)
268 PLN02918 pyridoxine (pyridoxam 54.5 1.1E+02 0.0023 29.9 9.4 49 70-118 137-192 (544)
269 PRK15438 erythronate-4-phospha 54.4 1.3E+02 0.0028 27.9 9.7 128 44-196 88-222 (378)
270 cd05313 NAD_bind_2_Glu_DH NAD( 54.3 75 0.0016 27.6 7.7 54 48-101 17-70 (254)
271 PF12000 Glyco_trans_4_3: Gkyc 54.3 26 0.00056 28.5 4.6 43 160-208 53-95 (171)
272 PRK06949 short chain dehydroge 54.0 96 0.0021 26.0 8.5 33 69-101 10-42 (258)
273 cd05286 QOR2 Quinone oxidoredu 53.8 1.4E+02 0.003 25.4 10.9 56 62-120 131-186 (320)
274 PRK12938 acetyacetyl-CoA reduc 53.7 1.3E+02 0.0028 25.0 9.7 55 69-123 4-60 (246)
275 cd08253 zeta_crystallin Zeta-c 53.7 1.4E+02 0.0031 25.5 10.7 54 63-119 140-193 (325)
276 COG0800 Eda 2-keto-3-deoxy-6-p 53.6 1.4E+02 0.003 25.3 10.9 68 52-124 27-94 (211)
277 PRK07677 short chain dehydroge 53.5 1.1E+02 0.0025 25.6 8.9 55 69-123 2-57 (252)
278 PRK07806 short chain dehydroge 53.5 1.3E+02 0.0028 25.0 9.8 55 69-123 7-63 (248)
279 PRK12828 short chain dehydroge 53.5 1.2E+02 0.0027 24.8 9.8 55 69-123 8-63 (239)
280 PRK03692 putative UDP-N-acetyl 53.4 1.1E+02 0.0024 26.4 8.6 70 108-185 98-168 (243)
281 PRK08085 gluconate 5-dehydroge 53.3 1.3E+02 0.0028 25.3 9.2 55 69-123 10-65 (254)
282 PRK07814 short chain dehydroge 53.3 1.1E+02 0.0024 26.0 8.8 54 69-122 11-65 (263)
283 TIGR02415 23BDH acetoin reduct 53.0 1.3E+02 0.0027 25.2 9.1 53 71-123 3-56 (254)
284 COG0623 FabI Enoyl-[acyl-carri 52.9 83 0.0018 27.2 7.5 28 68-95 6-35 (259)
285 PRK12775 putative trifunctiona 52.7 1.4E+02 0.0031 31.4 10.8 31 71-101 432-462 (1006)
286 cd01011 nicotinamidase Nicotin 52.7 85 0.0018 25.8 7.7 62 54-119 128-196 (196)
287 PRK11658 UDP-4-amino-4-deoxy-L 52.6 1.4E+02 0.003 27.3 9.8 52 72-123 51-102 (379)
288 KOG1205 Predicted dehydrogenas 52.6 1.4E+02 0.003 26.5 9.2 54 69-122 13-69 (282)
289 cd08261 Zn_ADH7 Alcohol dehydr 52.3 1.7E+02 0.0036 25.8 10.9 53 61-117 153-205 (337)
290 cd08260 Zn_ADH6 Alcohol dehydr 52.2 1.7E+02 0.0036 25.9 10.2 51 62-116 160-210 (345)
291 cd05283 CAD1 Cinnamyl alcohol 52.2 1.2E+02 0.0025 26.9 9.0 52 65-120 167-218 (337)
292 TIGR02817 adh_fam_1 zinc-bindi 52.1 1.1E+02 0.0025 26.8 9.0 50 68-120 149-199 (336)
293 TIGR02379 ECA_wecE TDP-4-keto- 52.1 76 0.0017 29.1 8.0 54 71-124 48-101 (376)
294 PRK08936 glucose-1-dehydrogena 52.0 1.5E+02 0.0032 25.1 9.8 54 69-122 8-63 (261)
295 cd08279 Zn_ADH_class_III Class 51.8 1.8E+02 0.0039 26.1 10.9 54 61-117 176-229 (363)
296 cd08251 polyketide_synthase po 51.8 1.5E+02 0.0032 25.2 10.7 54 61-117 114-167 (303)
297 PRK08261 fabG 3-ketoacyl-(acyl 51.7 1.9E+02 0.0041 26.9 10.7 57 68-124 210-266 (450)
298 PRK08213 gluconate 5-dehydroge 51.6 1.3E+02 0.0028 25.3 9.0 56 69-124 13-69 (259)
299 PF00764 Arginosuc_synth: Argi 51.3 2E+02 0.0043 26.8 10.3 127 72-206 1-138 (388)
300 PRK12831 putative oxidoreducta 51.3 79 0.0017 29.9 8.1 51 71-121 283-338 (464)
301 PRK12745 3-ketoacyl-(acyl-carr 51.1 1.5E+02 0.0032 24.8 9.5 54 70-123 4-59 (256)
302 PLN02514 cinnamyl-alcohol dehy 51.0 1.3E+02 0.0029 27.0 9.3 56 62-120 175-230 (357)
303 PRK10490 sensor protein KdpD; 50.9 2.9E+02 0.0062 28.7 12.6 108 69-183 251-375 (895)
304 PRK12744 short chain dehydroge 50.9 1.3E+02 0.0028 25.4 8.8 55 69-123 9-68 (257)
305 PRK06113 7-alpha-hydroxysteroi 50.7 1.3E+02 0.0029 25.2 8.9 55 69-123 12-67 (255)
306 cd08290 ETR 2-enoyl thioester 50.6 1.1E+02 0.0024 26.9 8.7 59 63-121 142-201 (341)
307 cd05278 FDH_like Formaldehyde 50.5 1.2E+02 0.0026 26.7 8.9 55 61-118 161-215 (347)
308 PRK09134 short chain dehydroge 50.4 1.5E+02 0.0033 24.9 9.9 55 69-123 10-66 (258)
309 cd08248 RTN4I1 Human Reticulon 50.3 1.1E+02 0.0023 27.1 8.5 47 68-118 163-209 (350)
310 PRK06836 aspartate aminotransf 50.1 2E+02 0.0044 26.2 11.7 52 72-124 99-150 (394)
311 cd08276 MDR7 Medium chain dehy 49.9 1.7E+02 0.0038 25.3 10.7 54 63-120 156-209 (336)
312 TIGR03590 PseG pseudaminic aci 49.7 1.8E+02 0.0038 25.4 10.2 81 34-123 2-88 (279)
313 PRK06077 fabG 3-ketoacyl-(acyl 49.7 1.2E+02 0.0027 25.1 8.5 55 69-123 7-63 (252)
314 cd08249 enoyl_reductase_like e 49.6 1E+02 0.0022 27.4 8.3 49 66-118 153-201 (339)
315 PRK07791 short chain dehydroge 49.4 1.6E+02 0.0034 25.5 9.3 72 69-140 7-89 (286)
316 TIGR03801 asp_4_decarbox aspar 49.3 2.6E+02 0.0055 27.1 12.2 82 42-123 126-215 (521)
317 PRK07392 threonine-phosphate d 49.3 1.3E+02 0.0028 27.1 8.9 50 72-123 77-126 (360)
318 PRK12778 putative bifunctional 49.2 2.7E+02 0.0059 28.1 12.0 31 71-101 433-463 (752)
319 cd08185 Fe-ADH1 Iron-containin 49.2 1.3E+02 0.0028 27.5 9.0 95 94-195 4-102 (380)
320 PRK04870 histidinol-phosphate 49.0 1.5E+02 0.0032 26.5 9.3 82 72-154 84-166 (356)
321 cd08234 threonine_DH_like L-th 49.0 1.8E+02 0.004 25.4 10.0 54 61-117 153-206 (334)
322 COG0300 DltE Short-chain dehyd 48.9 1.5E+02 0.0032 26.0 8.8 68 69-139 7-80 (265)
323 PRK06138 short chain dehydroge 48.6 1.6E+02 0.0034 24.5 9.2 54 69-123 6-60 (252)
324 PRK07324 transaminase; Validat 48.5 1.5E+02 0.0034 26.8 9.4 51 72-123 83-133 (373)
325 cd05188 MDR Medium chain reduc 48.5 1.6E+02 0.0034 24.5 9.9 52 62-117 129-180 (271)
326 PRK06701 short chain dehydroge 48.3 1.8E+02 0.004 25.2 10.2 55 69-123 47-103 (290)
327 cd05284 arabinose_DH_like D-ar 48.1 1.3E+02 0.0029 26.4 8.7 52 64-119 164-216 (340)
328 COG0075 Serine-pyruvate aminot 47.9 1.8E+02 0.0038 27.0 9.5 30 72-101 83-112 (383)
329 cd08286 FDH_like_ADH2 formalde 47.7 1.7E+02 0.0037 25.8 9.4 52 62-117 161-213 (345)
330 PF13460 NAD_binding_10: NADH( 47.6 45 0.00097 26.5 5.2 46 72-122 2-47 (183)
331 PRK07366 succinyldiaminopimela 47.5 2.2E+02 0.0047 25.8 12.9 109 43-155 67-179 (388)
332 PLN03050 pyridoxine (pyridoxam 47.4 80 0.0017 27.3 6.9 33 70-102 62-97 (246)
333 cd08270 MDR4 Medium chain dehy 47.2 1.8E+02 0.0039 25.0 9.3 50 67-119 132-181 (305)
334 COG1587 HemD Uroporphyrinogen- 47.2 1.8E+02 0.0039 24.8 10.1 120 81-209 86-212 (248)
335 PRK08068 transaminase; Reviewe 47.0 2.2E+02 0.0049 25.8 12.5 77 44-123 70-147 (389)
336 PRK06567 putative bifunctional 46.9 1.4E+02 0.0031 31.3 9.4 32 70-101 384-415 (1028)
337 TIGR01963 PHB_DH 3-hydroxybuty 46.8 1.5E+02 0.0032 24.7 8.5 54 70-123 3-57 (255)
338 PRK11891 aspartate carbamoyltr 46.7 1.2E+02 0.0025 28.7 8.2 54 68-122 241-300 (429)
339 PRK08912 hypothetical protein; 46.7 2.2E+02 0.0049 25.7 14.1 78 43-123 62-140 (387)
340 PRK15454 ethanol dehydrogenase 46.6 97 0.0021 28.7 7.8 22 164-188 98-119 (395)
341 PRK08264 short chain dehydroge 46.5 1.1E+02 0.0024 25.3 7.6 33 69-101 7-40 (238)
342 PRK09291 short chain dehydroge 46.4 92 0.002 26.1 7.2 53 70-122 4-57 (257)
343 PRK06198 short chain dehydroge 46.4 1.8E+02 0.0038 24.4 9.6 55 69-123 7-63 (260)
344 cd08235 iditol_2_DH_like L-idi 46.3 2.1E+02 0.0045 25.2 11.3 54 61-117 159-212 (343)
345 PRK05166 histidinol-phosphate 46.2 1.5E+02 0.0032 26.8 8.9 52 72-124 91-142 (371)
346 PRK06947 glucose-1-dehydrogena 46.2 1.3E+02 0.0029 24.9 8.2 55 70-124 4-60 (248)
347 PRK06500 short chain dehydroge 46.2 1.7E+02 0.0037 24.2 9.6 51 69-122 7-58 (249)
348 PLN02527 aspartate carbamoyltr 46.1 73 0.0016 28.5 6.6 45 78-122 163-210 (306)
349 KOG1177 Long chain fatty acid 45.8 2.9E+02 0.0062 26.7 11.0 91 33-124 68-158 (596)
350 cd08265 Zn_ADH3 Alcohol dehydr 45.7 2.3E+02 0.0049 25.7 10.1 54 63-119 199-252 (384)
351 PRK07985 oxidoreductase; Provi 45.6 1.9E+02 0.0042 25.1 9.3 55 69-123 50-107 (294)
352 cd05289 MDR_like_2 alcohol deh 45.4 1.9E+02 0.0041 24.5 9.2 51 62-116 139-189 (309)
353 PRK08265 short chain dehydroge 45.4 1.9E+02 0.0041 24.5 9.8 53 69-123 7-59 (261)
354 cd08254 hydroxyacyl_CoA_DH 6-h 45.4 2.1E+02 0.0045 24.9 10.6 56 62-121 160-215 (338)
355 PRK09072 short chain dehydroge 45.2 1.7E+02 0.0036 24.7 8.7 33 69-101 6-38 (263)
356 cd08255 2-desacetyl-2-hydroxye 45.2 1.7E+02 0.0037 24.8 8.7 51 61-115 91-142 (277)
357 PRK00779 ornithine carbamoyltr 45.2 1.3E+02 0.0028 26.8 8.1 47 76-122 160-209 (304)
358 TIGR01318 gltD_gamma_fam gluta 45.0 1E+02 0.0022 29.2 7.8 50 71-120 143-210 (467)
359 PRK07231 fabG 3-ketoacyl-(acyl 44.9 1.8E+02 0.0039 24.1 9.5 33 69-101 6-38 (251)
360 PRK08017 oxidoreductase; Provi 44.9 1.1E+02 0.0023 25.7 7.3 51 70-123 4-54 (256)
361 TIGR03325 BphB_TodD cis-2,3-di 44.9 1.9E+02 0.0041 24.4 9.4 51 69-122 6-57 (262)
362 TIGR03845 sulfopyru_alph sulfo 44.8 1.6E+02 0.0034 23.4 10.5 73 72-145 62-148 (157)
363 TIGR02853 spore_dpaA dipicolin 44.8 2.2E+02 0.0048 25.1 10.5 66 48-117 130-196 (287)
364 PRK15407 lipopolysaccharide bi 44.7 2.2E+02 0.0049 26.7 10.0 53 72-124 81-141 (438)
365 PRK05854 short chain dehydroge 44.6 2E+02 0.0043 25.4 9.2 73 69-141 15-91 (313)
366 COG2861 Uncharacterized protei 44.5 2.1E+02 0.0046 24.8 8.8 59 31-101 28-86 (250)
367 PF00091 Tubulin: Tubulin/FtsZ 44.4 1.3E+02 0.0029 25.0 7.7 58 152-209 91-163 (216)
368 TIGR03877 thermo_KaiC_1 KaiC d 44.4 77 0.0017 26.9 6.3 55 63-117 16-74 (237)
369 PRK13243 glyoxylate reductase; 44.2 2.1E+02 0.0045 25.8 9.3 96 71-190 152-247 (333)
370 PRK12769 putative oxidoreducta 44.1 51 0.0011 32.7 5.8 51 70-120 328-396 (654)
371 cd00616 AHBA_syn 3-amino-5-hyd 43.9 1.2E+02 0.0026 26.8 7.9 53 72-124 36-88 (352)
372 PRK01688 histidinol-phosphate 43.9 2.4E+02 0.0052 25.3 10.6 86 72-163 77-163 (351)
373 PRK09242 tropinone reductase; 43.9 1.9E+02 0.0042 24.2 9.0 56 69-124 10-68 (257)
374 PRK05717 oxidoreductase; Valid 43.8 1.9E+02 0.0042 24.2 9.6 53 69-123 11-63 (255)
375 COG0169 AroE Shikimate 5-dehyd 43.6 89 0.0019 27.6 6.6 72 29-101 86-158 (283)
376 PRK09414 glutamate dehydrogena 43.6 1.1E+02 0.0025 28.9 7.7 53 48-100 211-263 (445)
377 PRK07774 short chain dehydroge 43.5 1.9E+02 0.0041 24.0 9.1 54 69-122 7-61 (250)
378 PF02887 PK_C: Pyruvate kinase 43.3 71 0.0015 23.8 5.3 83 163-266 7-89 (117)
379 PRK12810 gltD glutamate syntha 43.1 1.3E+02 0.0028 28.4 8.2 50 71-120 145-212 (471)
380 PF06068 TIP49: TIP49 C-termin 42.8 1.2E+02 0.0026 28.1 7.4 56 44-101 27-86 (398)
381 PRK07576 short chain dehydroge 42.8 2.1E+02 0.0045 24.3 8.9 54 69-122 10-64 (264)
382 cd08263 Zn_ADH10 Alcohol dehyd 42.8 2E+02 0.0043 25.8 9.1 52 63-117 183-234 (367)
383 PRK13111 trpA tryptophan synth 42.7 1.7E+02 0.0037 25.4 8.2 72 48-123 72-151 (258)
384 PRK05565 fabG 3-ketoacyl-(acyl 42.7 1.9E+02 0.0041 23.8 9.1 55 69-123 6-62 (247)
385 cd08550 GlyDH-like Glycerol_de 42.6 1.3E+02 0.0028 27.2 7.8 33 174-209 77-109 (349)
386 PRK09545 znuA high-affinity zi 42.5 1.7E+02 0.0037 26.1 8.5 85 83-171 212-306 (311)
387 KOG4175 Tryptophan synthase al 42.4 2.1E+02 0.0045 24.2 10.9 67 39-112 102-168 (268)
388 PRK14031 glutamate dehydrogena 42.4 1.2E+02 0.0025 28.8 7.5 54 48-101 207-260 (444)
389 KOG3857 Alcohol dehydrogenase, 42.4 88 0.0019 28.7 6.3 24 247-270 297-320 (465)
390 TIGR00658 orni_carb_tr ornithi 42.3 1.7E+02 0.0036 26.1 8.3 46 77-122 157-208 (304)
391 CHL00200 trpA tryptophan synth 42.3 2.3E+02 0.0051 24.7 12.0 66 51-121 107-174 (263)
392 cd08241 QOR1 Quinone oxidoredu 42.1 2.2E+02 0.0047 24.3 10.6 55 62-119 134-188 (323)
393 PRK09860 putative alcohol dehy 42.0 1.6E+02 0.0036 27.0 8.5 28 164-195 80-107 (383)
394 PRK11609 nicotinamidase/pyrazi 41.9 2E+02 0.0043 23.8 9.0 58 60-121 138-204 (212)
395 CHL00194 ycf39 Ycf39; Provisio 41.9 1.1E+02 0.0024 26.9 7.3 31 71-101 3-33 (317)
396 PRK12859 3-ketoacyl-(acyl-carr 41.9 1.9E+02 0.0041 24.4 8.5 55 69-123 7-75 (256)
397 PRK07904 short chain dehydroge 41.9 2.1E+02 0.0046 24.1 9.4 54 69-122 9-66 (253)
398 PRK13376 pyrB bifunctional asp 41.8 1.3E+02 0.0029 29.1 8.0 54 68-122 174-233 (525)
399 cd08283 FDH_like_1 Glutathione 41.8 2E+02 0.0044 26.1 9.1 56 61-119 178-234 (386)
400 COG1922 WecG Teichoic acid bio 41.5 1.8E+02 0.0039 25.3 8.0 120 80-207 71-193 (253)
401 PLN02342 ornithine carbamoyltr 41.4 1.5E+02 0.0032 27.1 7.9 46 77-122 203-251 (348)
402 cd08176 LPO Lactadehyde:propan 41.4 1.4E+02 0.0029 27.4 7.8 95 93-195 5-104 (377)
403 KOG0022 Alcohol dehydrogenase, 41.3 2.8E+02 0.006 25.3 12.0 114 63-213 188-301 (375)
404 PRK05650 short chain dehydroge 41.3 2.2E+02 0.0048 24.1 8.9 53 71-123 3-56 (270)
405 PRK07062 short chain dehydroge 41.3 2.2E+02 0.0047 24.0 9.1 33 69-101 9-41 (265)
406 cd08191 HHD 6-hydroxyhexanoate 41.3 2.4E+02 0.0052 25.9 9.5 20 174-195 79-98 (386)
407 cd08238 sorbose_phosphate_red 41.2 1.2E+02 0.0026 28.0 7.5 51 62-114 170-222 (410)
408 TIGR01470 cysG_Nterm siroheme 41.1 2.1E+02 0.0045 23.8 9.5 49 71-122 11-59 (205)
409 cd06450 DOPA_deC_like DOPA dec 40.7 1.9E+02 0.0042 25.4 8.6 52 72-123 60-124 (345)
410 PRK07775 short chain dehydroge 40.6 2.3E+02 0.005 24.2 9.2 54 70-123 12-66 (274)
411 TIGR03537 DapC succinyldiamino 40.5 2.7E+02 0.0058 24.8 13.2 79 42-123 34-116 (350)
412 PRK12749 quinate/shikimate deh 40.4 1.9E+02 0.0041 25.6 8.3 32 71-102 126-157 (288)
413 PF13433 Peripla_BP_5: Peripla 39.9 1.1E+02 0.0023 28.2 6.7 86 108-199 126-213 (363)
414 PRK06079 enoyl-(acyl carrier p 39.8 2E+02 0.0044 24.2 8.3 32 69-100 8-41 (252)
415 PRK11749 dihydropyrimidine deh 39.7 1.5E+02 0.0033 27.7 8.1 53 68-121 273-331 (457)
416 PRK08339 short chain dehydroge 39.7 2.2E+02 0.0048 24.2 8.6 32 69-100 9-40 (263)
417 PRK12747 short chain dehydroge 39.6 2E+02 0.0044 24.0 8.3 54 69-122 5-60 (252)
418 PRK07063 short chain dehydroge 39.6 2.3E+02 0.0049 23.8 9.2 55 69-123 8-65 (260)
419 TIGR01831 fabG_rel 3-oxoacyl-( 39.5 2.2E+02 0.0047 23.5 9.6 53 72-124 2-56 (239)
420 PRK08192 aspartate carbamoyltr 39.5 1.8E+02 0.0039 26.4 8.1 54 68-122 159-218 (338)
421 PRK10624 L-1,2-propanediol oxi 39.5 1.6E+02 0.0034 27.1 8.0 26 165-194 80-105 (382)
422 PRK13982 bifunctional SbtC-lik 39.2 42 0.00091 32.0 4.1 42 76-123 280-321 (475)
423 PF02310 B12-binding: B12 bind 39.0 1.5E+02 0.0033 21.6 6.9 92 82-183 18-113 (121)
424 PF03853 YjeF_N: YjeF-related 39.0 2E+02 0.0044 23.0 10.0 31 69-99 26-59 (169)
425 PRK13984 putative oxidoreducta 38.9 1.3E+02 0.0029 29.3 7.8 50 71-120 285-352 (604)
426 cd08170 GlyDH Glycerol dehydro 38.9 1.5E+02 0.0033 26.7 7.7 33 174-209 77-109 (351)
427 PTZ00433 tyrosine aminotransfe 38.8 2.3E+02 0.005 26.0 9.1 51 72-123 107-157 (412)
428 cd06324 PBP1_ABC_sugar_binding 38.7 2.6E+02 0.0057 24.2 18.3 45 163-210 192-240 (305)
429 PRK06505 enoyl-(acyl carrier p 38.7 2.5E+02 0.0055 24.0 9.5 32 69-100 8-41 (271)
430 PF13450 NAD_binding_8: NAD(P) 38.7 49 0.0011 22.1 3.4 28 76-103 3-30 (68)
431 PRK02102 ornithine carbamoyltr 38.7 2E+02 0.0042 26.1 8.2 51 72-122 158-216 (331)
432 cd08272 MDR6 Medium chain dehy 38.6 2.5E+02 0.0055 24.0 10.5 56 61-120 138-193 (326)
433 PRK12414 putative aminotransfe 38.6 3E+02 0.0066 24.9 13.0 51 72-123 93-143 (384)
434 PRK06425 histidinol-phosphate 38.6 2.8E+02 0.0061 24.5 9.4 49 72-123 60-108 (332)
435 PLN02583 cinnamoyl-CoA reducta 38.5 2.5E+02 0.0055 24.4 8.9 33 69-101 7-39 (297)
436 PRK08642 fabG 3-ketoacyl-(acyl 38.5 2.3E+02 0.005 23.5 9.1 52 69-122 6-58 (253)
437 KOG1197 Predicted quinone oxid 38.5 2.5E+02 0.0054 24.8 8.3 55 60-117 139-193 (336)
438 TIGR03540 DapC_direct LL-diami 38.3 3E+02 0.0065 24.8 12.6 51 72-123 94-144 (383)
439 cd01078 NAD_bind_H4MPT_DH NADP 38.3 2.2E+02 0.0047 23.1 8.2 32 68-99 28-59 (194)
440 COG0836 {ManC} Mannose-1-phosp 38.1 1.4E+02 0.003 27.0 6.9 55 71-141 80-138 (333)
441 PRK05839 hypothetical protein; 38.0 3.1E+02 0.0067 24.8 12.0 78 43-123 59-138 (374)
442 TIGR00936 ahcY adenosylhomocys 38.0 1.3E+02 0.0028 28.2 7.0 97 63-187 190-286 (406)
443 PRK07060 short chain dehydroge 38.0 1.9E+02 0.0041 23.9 7.8 52 69-123 10-62 (245)
444 PRK08335 translation initiatio 37.8 1.4E+02 0.0031 26.2 7.0 58 65-123 107-168 (275)
445 PRK02731 histidinol-phosphate 37.8 2.3E+02 0.0049 25.4 8.7 51 72-123 87-137 (367)
446 PF01494 FAD_binding_3: FAD bi 37.8 53 0.0012 28.8 4.5 32 71-102 3-34 (356)
447 COG2894 MinD Septum formation 37.7 2.7E+02 0.0058 24.1 9.8 122 76-213 19-149 (272)
448 PRK06806 fructose-bisphosphate 37.6 2.9E+02 0.0062 24.4 13.1 128 51-184 30-176 (281)
449 PRK08251 short chain dehydroge 37.6 2.4E+02 0.0051 23.4 8.8 54 70-123 4-60 (248)
450 KOG1198 Zinc-binding oxidoredu 37.4 2.6E+02 0.0056 25.5 8.9 54 64-120 154-207 (347)
451 PRK06953 short chain dehydroge 37.4 1.8E+02 0.0039 23.8 7.4 51 70-123 3-53 (222)
452 PF02737 3HCDH_N: 3-hydroxyacy 37.2 68 0.0015 26.1 4.7 30 72-101 2-31 (180)
453 PLN02253 xanthoxin dehydrogena 37.1 2.3E+02 0.0051 24.1 8.4 32 69-100 19-50 (280)
454 TIGR03588 PseC UDP-4-keto-6-de 37.0 2.2E+02 0.0047 25.8 8.5 50 72-123 47-98 (380)
455 PRK08416 7-alpha-hydroxysteroi 37.0 2.6E+02 0.0055 23.6 9.4 72 69-140 9-84 (260)
456 PRK06202 hypothetical protein; 36.9 46 0.001 28.0 3.8 37 176-212 63-99 (232)
457 PRK03562 glutathione-regulated 36.9 1.2E+02 0.0027 29.9 7.2 51 71-124 402-452 (621)
458 COG2247 LytB Putative cell wal 36.6 2.8E+02 0.0061 25.1 8.5 71 72-142 55-127 (337)
459 PRK05973 replicative DNA helic 36.6 1.6E+02 0.0035 25.3 7.0 54 63-116 59-116 (237)
460 PRK14805 ornithine carbamoyltr 36.4 2.2E+02 0.0047 25.4 8.1 45 78-122 157-207 (302)
461 PRK03321 putative aminotransfe 36.4 2.9E+02 0.0063 24.5 9.2 29 96-124 100-128 (352)
462 PRK04284 ornithine carbamoyltr 36.2 2.1E+02 0.0046 25.9 8.0 45 78-122 166-216 (332)
463 PLN03049 pyridoxine (pyridoxam 36.2 3E+02 0.0066 26.2 9.4 33 70-102 61-96 (462)
464 TIGR01317 GOGAT_sm_gam glutama 35.9 88 0.0019 29.8 5.9 50 71-120 145-212 (485)
465 PF06745 KaiC: KaiC; InterPro 35.8 80 0.0017 26.3 5.1 54 63-116 14-72 (226)
466 PRK00257 erythronate-4-phospha 35.8 1.2E+02 0.0027 28.0 6.6 56 44-100 88-147 (381)
467 CHL00149 odpA pyruvate dehydro 35.8 3E+02 0.0064 25.0 9.0 60 86-145 179-252 (341)
468 PRK13403 ketol-acid reductoiso 35.6 3.4E+02 0.0074 24.7 13.1 30 72-101 19-48 (335)
469 PRK02255 putrescine carbamoylt 35.6 2.3E+02 0.005 25.7 8.2 45 78-122 164-214 (338)
470 PRK08594 enoyl-(acyl carrier p 35.6 2.7E+02 0.0059 23.5 9.6 72 69-140 8-84 (257)
471 COG2085 Predicted dinucleotide 35.4 2.7E+02 0.0059 23.5 10.4 31 72-102 4-34 (211)
472 TIGR02638 lactal_redase lactal 35.3 2E+02 0.0043 26.4 7.9 22 164-188 78-99 (379)
473 PRK12726 flagellar biosynthesi 35.3 2.2E+02 0.0047 26.7 7.9 77 41-124 212-294 (407)
474 PRK06123 short chain dehydroge 35.2 2.4E+02 0.0053 23.3 8.0 54 70-123 4-59 (248)
475 PRK12814 putative NADPH-depend 35.2 2.7E+02 0.0058 27.7 9.3 54 66-120 321-380 (652)
476 PRK01438 murD UDP-N-acetylmura 35.2 1.7E+02 0.0038 27.5 7.8 49 72-120 19-69 (480)
477 PRK12778 putative bifunctional 35.2 1.6E+02 0.0035 29.7 7.9 51 71-121 572-628 (752)
478 PRK07856 short chain dehydroge 35.1 2.6E+02 0.0057 23.3 8.3 33 69-101 7-39 (252)
479 PLN02591 tryptophan synthase 35.1 3E+02 0.0065 23.8 12.1 31 83-113 122-152 (250)
480 PRK08862 short chain dehydroge 35.1 2.7E+02 0.0057 23.2 8.6 74 106-184 20-93 (227)
481 PRK06841 short chain dehydroge 35.0 2.7E+02 0.0058 23.2 9.1 33 69-101 16-48 (255)
482 PRK08945 putative oxoacyl-(acy 35.0 2.6E+02 0.0057 23.2 9.3 34 68-101 12-45 (247)
483 TIGR00511 ribulose_e2b2 ribose 34.9 1.5E+02 0.0033 26.3 6.9 58 65-123 113-174 (301)
484 PRK04635 histidinol-phosphate 34.9 3.3E+02 0.0072 24.3 9.4 51 72-124 80-132 (354)
485 TIGR01830 3oxo_ACP_reduc 3-oxo 34.9 2.5E+02 0.0055 22.9 8.6 52 72-123 2-55 (239)
486 PRK09105 putative aminotransfe 34.8 2.4E+02 0.0052 25.6 8.4 52 72-124 98-149 (370)
487 TIGR01064 pyruv_kin pyruvate k 34.8 4.1E+02 0.0089 25.3 10.7 84 47-140 357-443 (473)
488 PF13478 XdhC_C: XdhC Rossmann 34.7 60 0.0013 25.2 3.8 31 72-102 1-31 (136)
489 PTZ00331 alpha/beta hydrolase; 34.7 2.5E+02 0.0054 23.4 7.8 58 59-120 141-205 (212)
490 smart00822 PKS_KR This enzymat 34.6 2E+02 0.0044 21.8 8.6 53 71-123 3-60 (180)
491 TIGR00511 ribulose_e2b2 ribose 34.6 2.2E+02 0.0048 25.3 7.8 23 117-140 143-165 (301)
492 PF00391 PEP-utilizers: PEP-ut 34.6 52 0.0011 22.8 3.1 31 70-101 32-62 (80)
493 PRK07326 short chain dehydroge 34.6 2.6E+02 0.0056 22.9 8.8 32 69-100 7-38 (237)
494 PRK05826 pyruvate kinase; Prov 34.5 4.2E+02 0.009 25.3 11.2 124 83-212 263-407 (465)
495 PRK07023 short chain dehydroge 34.5 2.5E+02 0.0055 23.2 8.0 49 71-123 4-52 (243)
496 PRK12831 putative oxidoreducta 34.3 1.4E+02 0.0029 28.3 6.8 29 71-99 142-170 (464)
497 PRK08340 glucose-1-dehydrogena 34.2 2.4E+02 0.0053 23.7 8.0 30 71-100 3-32 (259)
498 PRK12770 putative glutamate sy 34.2 1.9E+02 0.0042 25.9 7.6 51 71-121 174-230 (352)
499 PF00702 Hydrolase: haloacid d 34.2 1.6E+02 0.0035 23.7 6.6 66 51-123 131-203 (215)
500 PRK05447 1-deoxy-D-xylulose 5- 34.1 3.9E+02 0.0084 24.8 11.5 125 72-214 5-154 (385)
No 1
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=5.2e-65 Score=441.25 Aligned_cols=262 Identities=55% Similarity=0.915 Sum_probs=249.1
Q ss_pred HHHhcccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHH
Q 024022 9 KDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIA 88 (274)
Q Consensus 9 ~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a 88 (274)
+.+.+.+++|||++++++....+++||+|+|++||+||.|||.|.+++.+|+++|.+.||.+ ||++||||+|++||+.|
T Consensus 3 ~~~~~~iG~TPlvrL~~~~~~~~~~i~~KlE~~NP~gSvKDR~A~~mI~~Ae~~G~l~pG~t-IVE~TSGNTGI~LA~va 81 (300)
T COG0031 3 ESILDLIGNTPLVRLNRLSPGTGVEIYAKLESFNPGGSVKDRIALYMIEDAEKRGLLKPGGT-IVEATSGNTGIALAMVA 81 (300)
T ss_pred cchHHHhCCCCcEeecccCCCCCceEEEEhhhcCCCCchhHHHHHHHHHHHHHcCCCCCCCE-EEEcCCChHHHHHHHHH
Confidence 45778899999999999988878999999999999999999999999999999999999976 99999999999999999
Q ss_pred HHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCC-hhHHHHHHHHHHHhCCC-eEeeCCCCCCcchHhhhhchHHH
Q 024022 89 ASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVG-FEGFVKKGEEILNRTPN-GYILGQFENPANPEIHYETTGPE 166 (274)
Q Consensus 89 ~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~-~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~g~~t~~~E 166 (274)
+.+|+++++|||++++.+|++.|++|||+|+.++.... +..+.+++++++++.++ .+|++||+||.|+++||.|++.|
T Consensus 82 a~~Gy~~iivmP~~~S~er~~~l~a~GAevi~t~~~~g~~~~a~~~a~el~~~~p~~~~~~~Qf~NpaN~~aH~~tT~~E 161 (300)
T COG0031 82 AAKGYRLIIVMPETMSQERRKLLRALGAEVILTPGAPGNMKGAIERAKELAAEIPGYAVWLNQFENPANPEAHYETTGPE 161 (300)
T ss_pred HHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEcCCCCCchHHHHHHHHHHHHhCCCceEchhhcCCCccHHHHHhhhHHH
Confidence 99999999999999999999999999999999998444 78899999999999877 77888999999999999999999
Q ss_pred HHHhhCCCCCEEEEecCCcccHHHHHHHHHhhCCCcEEEEEecCCCccccCCCCcccccccCCCCCCcccccccccCeEE
Q 024022 167 IWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVI 246 (274)
Q Consensus 167 i~~q~~~~~d~iv~~vG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~v 246 (274)
|++|+++.+|+||+.+|||||++|++++||+.+|++++++|||++|+.+..|. .++.++|||.+++|.+++.+++|+++
T Consensus 162 I~~~~~g~~d~fVagvGTGGTitGvar~Lk~~~p~i~iv~vdP~~S~~~~~G~-g~~~i~GIG~~~ip~~~~~~~iD~v~ 240 (300)
T COG0031 162 IWQQTDGKVDAFVAGVGTGGTITGVARYLKERNPNVRIVAVDPEGSVLLSGGE-GPHKIEGIGAGFVPENLDLDLIDEVI 240 (300)
T ss_pred HHHHhCCCCCEEEEeCCcchhHHHHHHHHHhhCCCcEEEEECCCCCcccCCCC-CCcccCCCCCCcCCcccccccCceEE
Confidence 99999888999999999999999999999999999999999999998887666 88999999999999888889999999
Q ss_pred EeCHHHHHHHHHHHHHHcCCEecccC
Q 024022 247 TVSSEEAIETSKLLALKEGLLQRQLL 272 (274)
Q Consensus 247 ~v~d~e~~~a~~~l~~~eGi~~g~s~ 272 (274)
.|+|+++++++|+|+++||+++|+||
T Consensus 241 ~V~d~~A~~~~r~La~~eGilvG~Ss 266 (300)
T COG0031 241 RVSDEEAIATARRLAREEGLLVGISS 266 (300)
T ss_pred EECHHHHHHHHHHHHHHhCeeecccH
Confidence 99999999999999999999999997
No 2
>PLN03013 cysteine synthase
Probab=100.00 E-value=9.8e-64 Score=455.99 Aligned_cols=268 Identities=66% Similarity=1.108 Sum_probs=251.3
Q ss_pred hhHHHHhcccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHH
Q 024022 6 EIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLA 85 (274)
Q Consensus 6 ~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA 85 (274)
.+++++.+.+++|||++++.+.+..+.+||+|+|++|||||||||+|.+++.+++++|.+.||.++||++|+||||+|+|
T Consensus 112 ~~~~~i~~~iG~TPLv~l~~l~~~~g~~Iy~KlE~lNPtGSfKdR~A~~~l~~a~~~G~l~pG~~~VVeaSSGN~G~ALA 191 (429)
T PLN03013 112 NIADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFISPGKSVLVEPTSGNTGIGLA 191 (429)
T ss_pred HHHHHHHhcCCCCCeEECcccccccCCeEEEEeccCCCccccHHHHHHHHHHHHHHcCCcCCCCcEEEEECCcHHHHHHH
Confidence 36788999999999999999988777899999999999999999999999999999999999966799999999999999
Q ss_pred HHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhchHH
Q 024022 86 FIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGP 165 (274)
Q Consensus 86 ~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~ 165 (274)
++|+.+|++++||||+++++.|+++|+.+||+|+.+++...++++++.+++++++.++++|++||+||.|+++||.|+|+
T Consensus 192 ~~a~~~G~~~~VvvP~~~s~~K~~~ira~GAeVi~v~~~~~~~~a~~~A~ela~~~~g~~~~~qy~Np~n~~ah~~ttg~ 271 (429)
T PLN03013 192 FIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDPAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGP 271 (429)
T ss_pred HHHHHcCCCEEEEECCCCcHHHHHHHHHcCCEEEEECCCCChHHHHHHHHHHHhhcCCeEeCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987655678889999998886689999999999999779999999
Q ss_pred HHHHhhCCCCCEEEEecCCcccHHHHHHHHHhhCCCcEEEEEecCCCccccCCCCcccccccCCCCCCcccccccccCeE
Q 024022 166 EIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEV 245 (274)
Q Consensus 166 Ei~~q~~~~~d~iv~~vG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~ 245 (274)
||++|++++||+||+|+|+||+++|+++++|+.+|++|||+|||++++.+.++++.++.++|++.+.+|++++.+++|++
T Consensus 272 EI~eq~~~~~D~vV~~vGtGGtisGiar~lKe~~P~vkVigVep~gs~~l~~g~~~~~~i~Glg~~~ip~~~~~~~vD~v 351 (429)
T PLN03013 272 EIWDDTKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEPTESDILSGGKPGPHKIQGIGAGFIPKNLDQKIMDEV 351 (429)
T ss_pred HHHHhcCCCCCEEEEeCCccHHHHHHHHHHHhhCCCCEEEEEEeCCCchhhCCCCCCcccCcccCCcCCHhHHHHhccEE
Confidence 99999977899999999999999999999999999999999999999888777777788899999888888888899999
Q ss_pred EEeCHHHHHHHHHHHHHHcCCEecccCC
Q 024022 246 ITVSSEEAIETSKLLALKEGLLQRQLLY 273 (274)
Q Consensus 246 v~v~d~e~~~a~~~l~~~eGi~~g~s~~ 273 (274)
+.|+|+|+++++++|++++|+++||||.
T Consensus 352 v~VsD~ea~~a~r~La~~eGi~vG~SSG 379 (429)
T PLN03013 352 IAISSEEAIETAKQLALKEGLMVGISSG 379 (429)
T ss_pred EEECHHHHHHHHHHHHHHcCCEEecCHH
Confidence 9999999999999999999999999984
No 3
>PLN02565 cysteine synthase
Probab=100.00 E-value=4.1e-63 Score=443.02 Aligned_cols=268 Identities=75% Similarity=1.183 Sum_probs=247.1
Q ss_pred hhHHHHhcccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHH
Q 024022 6 EIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLA 85 (274)
Q Consensus 6 ~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA 85 (274)
.+.+.+...+++|||++++.++...+.+||+|+|++|||||||||+|.+++..+.+.|.+.+|.+.||++|+||||+|+|
T Consensus 4 ~~~~~~~~~ig~TPLv~l~~l~~~~~~~i~~K~E~~nPtGSfKdR~A~~~l~~~~~~g~~~~g~~~vv~aSsGN~g~alA 83 (322)
T PLN02565 4 SIAKDVTELIGKTPLVYLNNVVDGCVARIAAKLEMMEPCSSVKDRIGYSMITDAEEKGLIKPGESVLIEPTSGNTGIGLA 83 (322)
T ss_pred hhhhhHHHHhCCCceEEccccCCCCCceEEEEecccCCccchHHHHHHHHHHHHHHcCCCCCCCcEEEEECCChHHHHHH
Confidence 45677899999999999988766566799999999999999999999999999999998888867799999999999999
Q ss_pred HHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhchHH
Q 024022 86 FIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGP 165 (274)
Q Consensus 86 ~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~ 165 (274)
++|+++|++|+||||+++++.|+++|+.+||+|+.+++..+++++.+.+++++++.++++|++||+|+.|+..||+|+|+
T Consensus 84 ~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~q~~n~~n~~~~~~t~a~ 163 (322)
T PLN02565 84 FMAAAKGYKLIITMPASMSLERRIILLAFGAELVLTDPAKGMKGAVQKAEEILAKTPNSYILQQFENPANPKIHYETTGP 163 (322)
T ss_pred HHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCCcHHHHHHHHHHHHhCCCcEeecccCCHhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987545678889999998876678999999999998789999999
Q ss_pred HHHHhhCCCCCEEEEecCCcccHHHHHHHHHhhCCCcEEEEEecCCCccccCCCCcccccccCCCCCCcccccccccCeE
Q 024022 166 EIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEV 245 (274)
Q Consensus 166 Ei~~q~~~~~d~iv~~vG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~ 245 (274)
||++|++++||+||+|+|+||+++|+++++|+.+|++|||+|||++|+++..+++.++.++|++.+..|..+..+.+|++
T Consensus 164 Ei~~q~~~~~d~vv~~vG~GG~l~Gi~~~lk~~~p~~kvi~Vep~~s~~~~~g~~~~~~~~glg~~~~~~~~~~~~vd~~ 243 (322)
T PLN02565 164 EIWKGTGGKVDAFVSGIGTGGTITGAGKYLKEQNPDIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVDLLDEV 243 (322)
T ss_pred HHHHhcCCCCCEEEEcCCchHHHHHHHHHHHHhCCCCEEEEEecCCCccccCCCCCCccCCCCCCCCCCCcCCHhHCCEE
Confidence 99999976799999999999999999999999999999999999999888777777778899998766766777889999
Q ss_pred EEeCHHHHHHHHHHHHHHcCCEecccCC
Q 024022 246 ITVSSEEAIETSKLLALKEGLLQRQLLY 273 (274)
Q Consensus 246 v~v~d~e~~~a~~~l~~~eGi~~g~s~~ 273 (274)
+.|+|+|+++++++|++++|+++||||.
T Consensus 244 v~V~d~ea~~a~~~l~~~~gi~vg~ssg 271 (322)
T PLN02565 244 VQVSSDEAIETAKLLALKEGLLVGISSG 271 (322)
T ss_pred EEECHHHHHHHHHHHHHHhCcEEeccHH
Confidence 9999999999999999999999999984
No 4
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=100.00 E-value=1.3e-61 Score=439.55 Aligned_cols=268 Identities=58% Similarity=0.973 Sum_probs=247.1
Q ss_pred hhHHHHhcccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHH
Q 024022 6 EIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLA 85 (274)
Q Consensus 6 ~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA 85 (274)
++++++.+.+++|||++++++....|.+||+|+|++|||||||||++.+++.+++++|.+.||.++||++|+||||+++|
T Consensus 48 ~~~~~v~~~ig~TPl~~l~~l~~~~g~~I~~KlE~~nPtGS~KdR~A~~~l~~a~~~G~i~pG~~~vV~aSsGN~G~alA 127 (368)
T PLN02556 48 KIKTDASQLIGKTPLVYLNKVTEGCGAYIAAKQEMFQPTSSIKDRPALAMIEDAEKKNLITPGKTTLIEPTSGNMGISLA 127 (368)
T ss_pred hhhhhHHHhcCCCccEEccccccccCCEEEEEecccCCccchHHHHHHHHHHHHHHcCCcCCCCCEEEEeCCchHHHHHH
Confidence 45688999999999999999988778999999999999999999999999999999999999977799999999999999
Q ss_pred HHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhchHH
Q 024022 86 FIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGP 165 (274)
Q Consensus 86 ~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~ 165 (274)
++|+++|++|+||||+.++..|++.|+.|||+|+.++....+...++.+.+++++.++++|++||+||.++++||.++++
T Consensus 128 ~~a~~~G~~~~ivvp~~~~~~k~~~lr~~GA~Vi~~~~~~~~~~~~~~a~~l~~~~~~~~~~~q~~np~~~~~g~~ttg~ 207 (368)
T PLN02556 128 FMAAMKGYKMILTMPSYTSLERRVTMRAFGAELVLTDPTKGMGGTVKKAYELLESTPDAFMLQQFSNPANTQVHFETTGP 207 (368)
T ss_pred HHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCCCCccHHHHHHHHHHHhcCCCCccCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999986444557888888888887788999999999998779999999
Q ss_pred HHHHhhCCCCCEEEEecCCcccHHHHHHHHHhhCCCcEEEEEecCCCccccCCCCcccccccCCCCCCcccccccccCeE
Q 024022 166 EIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEV 245 (274)
Q Consensus 166 Ei~~q~~~~~d~iv~~vG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~ 245 (274)
||++|+.+.+|+||+|+|||||++|+++++|+.+|++|||+|||++++.+..+++.++.+.|++.+..|..++.+++|++
T Consensus 208 EI~eq~~~~~D~vV~~vGtGGt~aGv~~~lk~~~p~~kVigVep~~~~~~~~g~~~~~~i~g~g~~~~p~~~~~~~~d~~ 287 (368)
T PLN02556 208 EIWEDTLGQVDIFVMGIGSGGTVSGVGKYLKSKNPNVKIYGVEPAESNVLNGGKPGPHHITGNGVGFKPDILDMDVMEKV 287 (368)
T ss_pred HHHHhcCCCCCEEEEcCCcchHHHHHHHHHHHhCCCCEEEEEeeCCCccccCCCCCCeeeeeccCCCCccccchhhCCeE
Confidence 99999866899999999999999999999999999999999999999888777766677788887766777778899999
Q ss_pred EEeCHHHHHHHHHHHHHHcCCEecccCC
Q 024022 246 ITVSSEEAIETSKLLALKEGLLQRQLLY 273 (274)
Q Consensus 246 v~v~d~e~~~a~~~l~~~eGi~~g~s~~ 273 (274)
+.|+|+|+++++++|+++||+++||||.
T Consensus 288 v~Vsd~ea~~a~r~l~~~eGi~vg~ssg 315 (368)
T PLN02556 288 LEVSSEDAVNMARELALKEGLMVGISSG 315 (368)
T ss_pred EEECHHHHHHHHHHHHHHcCCEEecCHH
Confidence 9999999999999999999999999874
No 5
>PLN00011 cysteine synthase
Probab=100.00 E-value=4.2e-61 Score=431.12 Aligned_cols=273 Identities=74% Similarity=1.157 Sum_probs=248.6
Q ss_pred CcchhhhHHHHhcccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChH
Q 024022 1 MEDKCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNT 80 (274)
Q Consensus 1 ~~~~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~ 80 (274)
|++-+-+.+.+...+++|||++++++....|.+||+|+|++|||||||||++.+++..++++|.+.||.++||++|+|||
T Consensus 1 ~~~~~~~~~~~~~~~g~TPl~~l~~l~~~~g~~i~~K~E~~nPtGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~ 80 (323)
T PLN00011 1 MEDRCLIKNDVTELIGNTPMVYLNNIVDGCVARIAAKLEMMEPCSSVKDRIAYSMIKDAEDKGLITPGKSTLIEATAGNT 80 (323)
T ss_pred CcchhhHHhhHHHHhCCCceEEccccCCCCCceEEEEecccCCccccchHHHHHHHHHHHHcCCCCCCCcEEEEeCCChH
Confidence 55656677888889999999999998876668999999999999999999999999999999999998666999999999
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhh
Q 024022 81 GIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHY 160 (274)
Q Consensus 81 g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~ 160 (274)
|+|+|++|+.+|++|+||||+++++.|+++|+.+||+|+.++.....+++++.+++++++.++++|++||+|+.++..||
T Consensus 81 g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~n~~n~~~~~ 160 (323)
T PLN00011 81 GIGLACIGAARGYKVILVMPSTMSLERRIILRALGAEVHLTDQSIGLKGMLEKAEEILSKTPGGYIPQQFENPANPEIHY 160 (323)
T ss_pred HHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCcChHHHHHHHHHHHHhCCCeEEeccccCCccHHHHH
Confidence 99999999999999999999999999999999999999999865444567788888888766789999999999887799
Q ss_pred hchHHHHHHhhCCCCCEEEEecCCcccHHHHHHHHHhhCCCcEEEEEecCCCccccCCCCcccccccCCCCCCccccccc
Q 024022 161 ETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVA 240 (274)
Q Consensus 161 ~t~~~Ei~~q~~~~~d~iv~~vG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~ 240 (274)
.++++||++|+.++||+||+|+|+||+++|+++++|+.+|++|||||||++++++..+++..+.++|++.+..|..+...
T Consensus 161 ~t~~~EI~~q~~~~~D~iv~~vGtGGt~aGi~~~lk~~~~~~kvigVe~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~ 240 (323)
T PLN00011 161 RTTGPEIWRDSAGKVDILVAGVGTGGTATGVGKFLKEKNKDIKVCVVEPVESAVLSGGQPGPHLIQGIGSGIIPFNLDLT 240 (323)
T ss_pred HHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHhhCCCCEEEEEecCCCcccCCCCCCCCCCCCCCCCCCCcccChh
Confidence 99999999999668999999999999999999999999999999999999998887777777788899887667777778
Q ss_pred ccCeEEEeCHHHHHHHHHHHHHHcCCEecccCC
Q 024022 241 MLDEVITVSSEEAIETSKLLALKEGLLQRQLLY 273 (274)
Q Consensus 241 ~~d~~v~v~d~e~~~a~~~l~~~eGi~~g~s~~ 273 (274)
.+|+++.|+|+|+++++++|++++|+++||||.
T Consensus 241 ~~d~~v~V~d~e~~~a~~~l~~~~Gi~~~~ssg 273 (323)
T PLN00011 241 IVDEIIQVTGEEAIETAKLLALKEGLLVGISSG 273 (323)
T ss_pred hCCeEEEECHHHHHHHHHHHHHhcCCeEcccHH
Confidence 899999999999999999999999999999984
No 6
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=100.00 E-value=3.5e-60 Score=421.60 Aligned_cols=261 Identities=59% Similarity=0.968 Sum_probs=239.1
Q ss_pred hcccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHc
Q 024022 12 TELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASR 91 (274)
Q Consensus 12 ~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~ 91 (274)
...+++|||+++++|++..|.+||+|+|++|||||||+|++.+++..+++.|.+.+|.+ |+++|+||||+|+|++|+++
T Consensus 2 ~~~vg~TPL~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~-vv~aSsGN~g~alA~~a~~~ 80 (299)
T TIGR01136 2 EELIGNTPLVRLNRLAPGCDARVLAKLEGRNPSGSVKDRIALSMIEDAEKRGLLKPGDT-IIEATSGNTGIALAMVAAAK 80 (299)
T ss_pred ccccCCCceEEccccCCCCCceEEEEEcccCCCCCccHHHHHHHHHHHHHcCCCCCCCE-EEEeCCChHHHHHHHHHHHc
Confidence 45689999999999998888899999999999999999999999999999998888765 99999999999999999999
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhchHHHHHHhh
Q 024022 92 GYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDS 171 (274)
Q Consensus 92 g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~ 171 (274)
|++|+||||++++..|+++|+.+||+|+.++++.+++++.+.+++++++.+++++++||+|+.++..||.++++||++|+
T Consensus 81 G~~~~i~vp~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ql 160 (299)
T TIGR01136 81 GYKLILTMPETMSLERRKLLRAYGAELILTPAEEGMKGAIDKAEELAAETNKYVMLDQFENPANPEAHYKTTGPEIWRDT 160 (299)
T ss_pred CCcEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHhhCCCeEecCCCCCchhHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999997655788999999998876568899999999986679999999999999
Q ss_pred CCCCCEEEEecCCcccHHHHHHHHHhhCCCcEEEEEecCCCccccCCCCcccccccCCCCCCcccccccccCeEEEeCHH
Q 024022 172 GGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVITVSSE 251 (274)
Q Consensus 172 ~~~~d~iv~~vG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~v~v~d~ 251 (274)
+++||+||+|+|+||+++|++.++++.+|.+|||+|||++++++....+..+.+.+++.+..|+.+.++++|+++.|+|+
T Consensus 161 ~~~~d~iv~~vG~Gg~~~G~~~~~~~~~~~~~vi~Ve~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~d~~~~V~d~ 240 (299)
T TIGR01136 161 DGRIDHFVAGVGTGGTITGVGRYLKEQNPNIKIVAVEPAESPVLSGGEPGPHKIQGIGAGFIPKILDLSLIDEVITVSDE 240 (299)
T ss_pred CCCCCEEEEcCchhHHHHHHHHHHHHhCCCCEEEEEecCCCccccCCCCCCccCCCCCCCCCCccCChhhCCEEEEECHH
Confidence 76799999999999999999999999999999999999999888766555556677877666777778889999999999
Q ss_pred HHHHHHHHHHHHcCCEecccCC
Q 024022 252 EAIETSKLLALKEGLLQRQLLY 273 (274)
Q Consensus 252 e~~~a~~~l~~~eGi~~g~s~~ 273 (274)
|+++++++|++++|+++||||+
T Consensus 241 e~~~a~~~l~~~~gi~~e~ssa 262 (299)
T TIGR01136 241 DAIETARRLAREEGILVGISSG 262 (299)
T ss_pred HHHHHHHHHHHHhCceEcchHH
Confidence 9999999999999999999974
No 7
>PRK11761 cysM cysteine synthase B; Provisional
Probab=100.00 E-value=3.7e-60 Score=419.98 Aligned_cols=258 Identities=43% Similarity=0.678 Sum_probs=230.7
Q ss_pred hHHHHhcccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHH
Q 024022 7 IKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAF 86 (274)
Q Consensus 7 ~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~ 86 (274)
+++++...+++|||+++++|....|.+||+|+|++|||||||||++.+++.+++++|.+.+|.+ ||++|+||||+|+|+
T Consensus 2 ~~~~i~~~~g~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~-vv~aSsGN~g~alA~ 80 (296)
T PRK11761 2 AYPTLEDTIGNTPLVKLQRLPPDRGNTILAKLEGNNPAGSVKDRPALSMIVQAEKRGEIKPGDT-LIEATSGNTGIALAM 80 (296)
T ss_pred ccccHHHhcCCCceEeccccccCCCCEEEEEEcccCCCCCchhHHHHHHHHHHHHcCCCCCCCE-EEEeCCChHHHHHHH
Confidence 4578888999999999999988778899999999999999999999999999999998888755 999999999999999
Q ss_pred HHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhchHHH
Q 024022 87 IAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPE 166 (274)
Q Consensus 87 ~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~E 166 (274)
+|+.+|++|+||||+++++.|++.|+.+||+|+.++....++++.+.+++++++. +++|++||+|+.++..||.|+++|
T Consensus 81 ~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~l~~~~-~~~~~~~~~n~~~~~~~~~t~~~E 159 (296)
T PRK11761 81 IAAIKGYRMKLIMPENMSQERRAAMRAYGAELILVPKEQGMEGARDLALQMQAEG-EGKVLDQFANPDNPLAHYETTGPE 159 (296)
T ss_pred HHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHhcc-CCEecCCCCChhhHHHHhhchHHH
Confidence 9999999999999999999999999999999999996546788888899988775 789999999999987789999999
Q ss_pred HHHhhCCCCCEEEEecCCcccHHHHHHHHHhhCCCcEEEEEecCCCccccCCCCcccccccCCCCCCcccccccccCeEE
Q 024022 167 IWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVI 246 (274)
Q Consensus 167 i~~q~~~~~d~iv~~vG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~v 246 (274)
|++|+++.+|+||+|+|+||+++|+++++|+.+|++|||+|||.+++.+.+ +.++.....+..++...+|+++
T Consensus 160 i~eq~~~~~d~iv~~vG~Gg~~~Gi~~~lk~~~~~~kvigVep~~~~~i~g-------~~~~~~~~~~~~~~~~~vd~~v 232 (296)
T PRK11761 160 IWRQTEGRITHFVSSMGTTGTIMGVSRYLKEQNPAVQIVGLQPEEGSSIPG-------IRRWPEEYLPKIFDASRVDRVL 232 (296)
T ss_pred HHHhcCCCCCEEEecCCcHHHHHHHHHHHHHhCCCCEEEEEecCCCCcCcC-------CCCCCCCcCCcccChhhCCEEE
Confidence 999997679999999999999999999999999999999999998876532 1122122233445567899999
Q ss_pred EeCHHHHHHHHHHHHHHcCCEecccCC
Q 024022 247 TVSSEEAIETSKLLALKEGLLQRQLLY 273 (274)
Q Consensus 247 ~v~d~e~~~a~~~l~~~eGi~~g~s~~ 273 (274)
.|+|+|+++++++|++++|+++||||+
T Consensus 233 ~V~d~e~~~a~~~l~~~~gi~ve~ssg 259 (296)
T PRK11761 233 DVSQQEAENTMRRLAREEGIFCGVSSG 259 (296)
T ss_pred EECHHHHHHHHHHHHHHhCceEchhHH
Confidence 999999999999999999999999985
No 8
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=100.00 E-value=1.1e-59 Score=418.31 Aligned_cols=260 Identities=60% Similarity=0.953 Sum_probs=235.7
Q ss_pred hcccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHc
Q 024022 12 TELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASR 91 (274)
Q Consensus 12 ~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~ 91 (274)
..++++|||+++++ ....|.+||+|+|++|||||||||++.+++.++.++|.+.+|.+ |+++|+||||+|+|++|+++
T Consensus 2 ~~~~g~TPl~~~~~-~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~-vv~aSsGN~g~alA~~a~~~ 79 (298)
T TIGR01139 2 SELIGNTPLVRLNR-IEGCNANVFVKLEGRNPSGSVKDRIALNMIWDAEKRGLLKPGKT-IVEPTSGNTGIALAMVAAAR 79 (298)
T ss_pred ccccCCCceEEccc-cCCCCceEEEEEcccCCCCcchHHHHHHHHHHHHHcCCCCCCCE-EEEeCCChhHHHHHHHHHHc
Confidence 45789999999998 45667899999999999999999999999999999998888765 99999999999999999999
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCC-eEeeCCCCCCcchHhhhhchHHHHHHh
Q 024022 92 GYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPN-GYILGQFENPANPEIHYETTGPEIWND 170 (274)
Q Consensus 92 g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~g~~t~~~Ei~~q 170 (274)
|++|+||||+++++.|++.|+.+||+|+.++++.++.++.+.+++++++.++ +++++||+||.++..||.|+++||++|
T Consensus 80 Gl~~~i~vp~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q 159 (298)
T TIGR01139 80 GYKLILTMPETMSIERRKLLKAYGAELVLTPGAEGMKGAIAKAEEIAASTPNSYFMLQQFENPANPEIHRKTTGPEIWRD 159 (298)
T ss_pred CCeEEEEeCCccCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCcEEcccccCCcccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999754446788889998887643 558999999998778999999999999
Q ss_pred hCCCCCEEEEecCCcccHHHHHHHHHhhCCCcEEEEEecCCCccccCCCCcccccccCCCCCCcccccccccCeEEEeCH
Q 024022 171 SGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVITVSS 250 (274)
Q Consensus 171 ~~~~~d~iv~~vG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~v~v~d 250 (274)
+++.||+||+|+|+||+++|++.+|++.+|++|||+|||.+++.+...+..++.++|++.+..+..++...+|+++.|+|
T Consensus 160 ~~~~~d~vv~~vG~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~~~V~d 239 (298)
T TIGR01139 160 TDGKLDAFVAGVGTGGTITGVGEVLKEQKPNIKIVAVEPAESPVLSGGKPGPHKIQGIGAGFIPKNLNRSVIDEVITVSD 239 (298)
T ss_pred hCCCCCEEEEecchhHhHHHHHHHHHhcCCCCEEEEEecCCCcccCCCCCCCCCCCCCCCCCCCCccChhhCCEEEEECH
Confidence 97679999999999999999999999999999999999999987776666667778888776677777788999999999
Q ss_pred HHHHHHHHHHHHHcCCEecccCC
Q 024022 251 EEAIETSKLLALKEGLLQRQLLY 273 (274)
Q Consensus 251 ~e~~~a~~~l~~~eGi~~g~s~~ 273 (274)
+|+++++++|+++||+++||||+
T Consensus 240 ~e~~~a~~~l~~~~gi~~~pssg 262 (298)
T TIGR01139 240 EEAIETARRLAAEEGILVGISSG 262 (298)
T ss_pred HHHHHHHHHHHHhcCceEcccHH
Confidence 99999999999999999999974
No 9
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=100.00 E-value=4.1e-59 Score=412.37 Aligned_cols=254 Identities=41% Similarity=0.706 Sum_probs=227.6
Q ss_pred HhcccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHH
Q 024022 11 VTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAAS 90 (274)
Q Consensus 11 i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~ 90 (274)
+...+++|||+++++++...|.+||+|+|++|||||||||++.+++.++.+.|.+.+|.+ ||++|+||||+|+|++|++
T Consensus 2 i~~~ig~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~~g~~-vv~aSsGN~g~alA~~a~~ 80 (290)
T TIGR01138 2 IEQTVGNTPLVRLQRMGPENGSEVWLKLEGNNPAGSVKDRPALSMIVEAEKRGEIKPGDV-LIEATSGNTGIALAMIAAL 80 (290)
T ss_pred hHHhCCCCceEEccccccCCCCeEEEEEccCCCCccHHHHHHHHHHHHHHHcCCCCCCCE-EEEECCChHHHHHHHHHHH
Confidence 456789999999999988888899999999999999999999999999999998888765 9999999999999999999
Q ss_pred cCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhchHHHHHHh
Q 024022 91 RGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWND 170 (274)
Q Consensus 91 ~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q 170 (274)
+|++|+||||+++++.|++.|+.+||+|+.++.+.+++++.+.+++++++. +.+|++||+|+.++..||.|+++||++|
T Consensus 81 ~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~v~~~~~~~~~~~~a~~l~~~~-~~~~~~~~~~~~~~~~~~~t~~~Ei~~q 159 (290)
T TIGR01138 81 KGYRMKLLMPDNMSQERKAAMRAYGAELILVTKEEGMEGARDLALELANRG-EGKLLDQFNNPDNPYAHYTSTGPEIWQQ 159 (290)
T ss_pred cCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhC-CCCCCCccCCcccHHHHhHhHHHHHHHH
Confidence 999999999999999999999999999999987555788889999998886 4568999999999876789999999999
Q ss_pred hCCCCCEEEEecCCcccHHHHHHHHHhhCCCcEEEEEecCCCccccCCCCcccccccCCCCCCcccccccccCeEEEeCH
Q 024022 171 SGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVITVSS 250 (274)
Q Consensus 171 ~~~~~d~iv~~vG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~v~v~d 250 (274)
+++++|+||+|+|+||+++|++.++|+.+|++|||+|||.+++.+.+ +.+++.+..|..+....+|+++.|+|
T Consensus 160 ~~~~~d~iv~~vG~Gg~~~Gv~~~lk~~~~~~kvi~Vep~~~~~~~g-------~~~~~~~~~~~~~~~~~~d~~v~V~d 232 (290)
T TIGR01138 160 TGGRITHFVSSMGTTGTIMGVSRFLKEQNPPVQIVGLQPEEGSSIPG-------IRRWPTEYLPGIFDASLVDRVLDIHQ 232 (290)
T ss_pred cCCCCCEEEECCCchHHHHHHHHHHHHhCCCCEEEEEeCCCCCCccC-------CCCCCCCcCCcccChhhCcEEEEECH
Confidence 97689999999999999999999999999999999999999866532 12233333344455677999999999
Q ss_pred HHHHHHHHHHHHHcCCEecccCC
Q 024022 251 EEAIETSKLLALKEGLLQRQLLY 273 (274)
Q Consensus 251 ~e~~~a~~~l~~~eGi~~g~s~~ 273 (274)
+|+++++++|++++|+++||||+
T Consensus 233 ~e~~~a~~~l~~~~gi~~g~ssg 255 (290)
T TIGR01138 233 RDAENTMRELAVREGIFCGVSSG 255 (290)
T ss_pred HHHHHHHHHHHHHhCceEcHhHH
Confidence 99999999999999999999985
No 10
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=100.00 E-value=9.9e-60 Score=415.18 Aligned_cols=263 Identities=23% Similarity=0.300 Sum_probs=238.8
Q ss_pred hhhhHHHHhcccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHH
Q 024022 4 KCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIG 83 (274)
Q Consensus 4 ~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a 83 (274)
...++.++...+.+|||++++.|++.+|.+||+|+|++||+||||.|||++.++.+.+++.. ...||++|+||||++
T Consensus 12 i~~A~~ri~~~~~~TPL~~s~~Ls~~~g~~v~lK~E~lQ~~gSFK~RGA~n~i~~Ls~e~~~---~~gViaaSaGNHaQG 88 (347)
T COG1171 12 ILAAAARLKGVVNPTPLQRSPSLSERLGAEIYLKRENLQPVGSFKIRGAYNKLSSLSEEEER---AAGVIAASAGNHAQG 88 (347)
T ss_pred HHHHHHHHhCcccCCCcccchhhHHhhCceEEEeeccCcccccchhhhHHHHHHhcChhhhh---cCceEEecCCcHHHH
Confidence 45677899999999999999999999999999999999999999999999999997644221 344999999999999
Q ss_pred HHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhch
Q 024022 84 LAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETT 163 (274)
Q Consensus 84 lA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~ 163 (274)
+|++|+++|++++||||.++|..|++.++.|||+|++++. +|+++.+.++++++++ ++.|+++|++|+.+ +||+|+
T Consensus 89 vA~aa~~lGi~a~IvMP~~tp~~Kv~a~r~~GaeVil~g~--~~dda~~~a~~~a~~~-G~~~i~pfD~p~vi-AGQGTi 164 (347)
T COG1171 89 VAYAAKRLGIKATIVMPETTPKIKVDATRGYGAEVILHGD--NFDDAYAAAEELAEEE-GLTFVPPFDDPDVI-AGQGTI 164 (347)
T ss_pred HHHHHHHhCCCEEEEecCCCcHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHHc-CCEEeCCCCCccee-ecccHH
Confidence 9999999999999999999999999999999999999995 4899999999999998 89999999999998 799999
Q ss_pred HHHHHHhhCCCCCEEEEecCCcccHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC------cccccccCCCCC-
Q 024022 164 GPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQP------GKHLIQGIGAGV- 232 (274)
Q Consensus 164 ~~Ei~~q~~~~~d~iv~~vG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~----~~~~------~~~~~~gl~~~~- 232 (274)
+.||++|++..||+||||+|+||+++|++.++|...|++|||||||++++++. .|+. ..++++|+++..
T Consensus 165 ~lEileq~~~~~d~v~vpvGGGGLisGia~~~k~~~p~~~vIGVEp~~a~~~~~Sl~~G~~~~~~~~~~tiaDG~av~~~ 244 (347)
T COG1171 165 ALEILEQLPDLPDAVFVPVGGGGLISGIATALKALSPEIKVIGVEPEGAPSMYASLKAGKIVVVLPDVGTIADGLAVKRP 244 (347)
T ss_pred HHHHHHhccccCCEEEEecCccHHHHHHHHHHHHhCCCCeEEEEeeCCChHHHHHHHcCCceeecCCCCccccccccCCC
Confidence 99999999655799999999999999999999999999999999999998754 3422 346778887643
Q ss_pred --CcccccccccCeEEEeCHHHHHHHHHHHHHHcCCEecccCC
Q 024022 233 --IPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLQRQLLY 273 (274)
Q Consensus 233 --~~~~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~g~s~~ 273 (274)
.++.+.++++|+++.|+|+|+.+++++|++++++++|||.+
T Consensus 245 g~~tf~i~~~~vd~~v~V~e~ei~~am~~l~~~~~iI~EpaGA 287 (347)
T COG1171 245 GDLTFEILRELVDDIVLVDEDEICAAMRDLFERTKIIAEPAGA 287 (347)
T ss_pred CHHHHHHHHHcCCcEEEECHHHHHHHHHHHHhcCCeeccccHH
Confidence 46778899999999999999999999999999999999975
No 11
>PRK10717 cysteine synthase A; Provisional
Probab=100.00 E-value=3e-58 Score=414.36 Aligned_cols=266 Identities=45% Similarity=0.718 Sum_probs=232.4
Q ss_pred hHHHHhcccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHH
Q 024022 7 IKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAF 86 (274)
Q Consensus 7 ~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~ 86 (274)
+++.+.+.+++|||++++++++.+|.+||+|+|++|||||||+|++.+++.++++.|++.+|.+ ||++|+||||+|+|+
T Consensus 3 ~~~~~~~~~g~TPL~~~~~l~~~~g~~i~~K~E~~nptGS~K~Rga~~~v~~a~~~g~~~~g~~-vv~aSsGN~g~alA~ 81 (330)
T PRK10717 3 IFEDVSDTIGNTPLIRLNRASEATGCEILGKAEFLNPGGSVKDRAALNIIWDAEKRGLLKPGGT-IVEGTAGNTGIGLAL 81 (330)
T ss_pred hhhhHHHHhCCCceEEccccCCCCCCeEEEEeeccCCCCCchHHHHHHHHHHHHHcCCCCCCCE-EEEeCCcHHHHHHHH
Confidence 4678899999999999999998888999999999999999999999999999999998888755 999999999999999
Q ss_pred HHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCC------ChhHHHHHHHHHHHhC-CCeEeeCCCCCCcchHhh
Q 024022 87 IAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAV------GFEGFVKKGEEILNRT-PNGYILGQFENPANPEIH 159 (274)
Q Consensus 87 ~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~------~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~g 159 (274)
+|+++|++|+||||+.+++.|+++|+.+||+|+.++... ..+.+.+.++++.++. .+++|++||+||.++..|
T Consensus 82 ~a~~~G~~~~vv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g 161 (330)
T PRK10717 82 VAAARGYKTVIVMPETQSQEKKDLLRALGAELVLVPAAPYANPNNYVKGAGRLAEELVASEPNGAIWANQFDNPANREAH 161 (330)
T ss_pred HHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCcccccccchHHHHHHHHHHHHhhCCCCeEecCCCCChhhHHHH
Confidence 999999999999999999999999999999999998631 1122334444444433 378999999999987679
Q ss_pred hhchHHHHHHhhCCCCCEEEEecCCcccHHHHHHHHHhhCCCcEEEEEecCCCcccc---CCC---CcccccccCCCCCC
Q 024022 160 YETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN---GGQ---PGKHLIQGIGAGVI 233 (274)
Q Consensus 160 ~~t~~~Ei~~q~~~~~d~iv~~vG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~---~~~---~~~~~~~gl~~~~~ 233 (274)
|.|+++||++|++.++|+||+|+|+||+++|++.++|+..|+++||+|||++++.+. .++ ...+.++||+.+..
T Consensus 162 ~~t~a~Ei~~ql~~~~d~iv~~vG~GG~~~Gi~~~~k~~~~~~~vi~Vep~~~~~~~~~~~g~~~~~~~~~~~gl~~~~~ 241 (330)
T PRK10717 162 YETTGPEIWEQTDGKVDGFVCAVGTGGTLAGVSRYLKETNPKVKIVLADPTGSALYSYYKTGELKAEGSSITEGIGQGRI 241 (330)
T ss_pred HHhHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHhCCCCEEEEEcCCCCccccccccCCcCCCCCcccCcCCCCcC
Confidence 999999999999767999999999999999999999999999999999999985432 122 24467889988766
Q ss_pred cccccccccCeEEEeCHHHHHHHHHHHHHHcCCEecccCC
Q 024022 234 PPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLQRQLLY 273 (274)
Q Consensus 234 ~~~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~g~s~~ 273 (274)
+..+....+|+++.|+|+|+++++++|++++|+++||||+
T Consensus 242 ~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~gi~vepssg 281 (330)
T PRK10717 242 TANLEGAPIDDAIRIPDEEALSTAYRLLEEEGLCLGGSSG 281 (330)
T ss_pred CcccChhhCCEEEEECHHHHHHHHHHHHHhcCCeEeecHH
Confidence 6666667789999999999999999999999999999974
No 12
>PLN02356 phosphateglycerate kinase
Probab=100.00 E-value=2.9e-58 Score=419.91 Aligned_cols=267 Identities=36% Similarity=0.603 Sum_probs=230.3
Q ss_pred hhHHHHhcccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHH
Q 024022 6 EIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLA 85 (274)
Q Consensus 6 ~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA 85 (274)
+....+...+++|||+++++++...|.+||+|+|++|||||||||++.+++.+|.+.|.+.|+.+ |+++||||||+++|
T Consensus 42 ~~~~~~~~~ig~TPLv~~~~l~~~~g~~v~~KlE~~nPtGS~KdR~A~~~i~~a~~~g~~~~~g~-VveaSSGN~g~alA 120 (423)
T PLN02356 42 KPRNGLIDAIGNTPLIRINSLSEATGCEILGKCEFLNPGGSVKDRVAVKIIEEALESGQLFPGGV-VTEGSAGSTAISLA 120 (423)
T ss_pred chhhhHHhhcCCCceEECcccccccCCEEEEEeccCCCCCCHHHHHHHHHHHHHHhCCccCCCCE-EEEeCCHHHHHHHH
Confidence 34566788899999999999988888999999999999999999999999999999998777755 88899999999999
Q ss_pred HHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCC-----CCChh-HHH---HHHHHHHHh----------------
Q 024022 86 FIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP-----AVGFE-GFV---KKGEEILNR---------------- 140 (274)
Q Consensus 86 ~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~-----~~~~~-~~~---~~a~~~~~~---------------- 140 (274)
++|+++|++|+||||+++++.|++.|+.|||+|+.+++ ...+. .+. +.+.+++++
T Consensus 121 ~~aa~~G~~~~ivvP~~~s~~K~~~ir~~GAeVi~v~~~~~~~~~~~~~~a~~~~~~a~e~a~~~~~~~~~~~~~~~~~~ 200 (423)
T PLN02356 121 TVAPAYGCKCHVVIPDDVAIEKSQILEALGATVERVRPVSITHKDHYVNIARRRALEANELASKRRKGSETDGIHLEKTN 200 (423)
T ss_pred HHHHHcCCcEEEEECCCCcHHHHHHHHHcCCEEEEECCccCCCcchhHHHHHHHHHHHHHHHHHhhhccccccccccccc
Confidence 99999999999999999999999999999999999964 11221 111 234444433
Q ss_pred ----------------CCCeEeeCCCCCCcchHhhhhchHHHHHHhhCCCCCEEEEecCCcccHHHHHHHHHhhCCCcEE
Q 024022 141 ----------------TPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKV 204 (274)
Q Consensus 141 ----------------~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~iv~~vG~Gg~~~Gi~~~~k~~~~~~~v 204 (274)
.++.+|++||+|+.++..|+..+|+||++|+++++|+||+|+||||+++|+++++|+.+|++||
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~q~~n~~n~~ahg~gTg~EI~eQl~g~~D~vVv~vGtGGti~Gva~~lK~~~P~vkV 280 (423)
T PLN02356 201 GCISEEEKENSLFSSSCTGGFFADQFENLANFRAHYEGTGPEIWEQTQGNLDAFVAAAGTGGTLAGVSRFLQEKNPNIKC 280 (423)
T ss_pred cccccccccccccccCCCCcEecCccCCcchHHHHHhhHHHHHHHhcCCCCCEEEeCCCchHHHHHHHHHHHHhCCCCEE
Confidence 1467899999999997777666799999999778999999999999999999999999999999
Q ss_pred EEEecCCCcccc-------------CCC----CcccccccCCCCCCcccccccccCeEEEeCHHHHHHHHHHHHHHcCCE
Q 024022 205 YGIEPSESAVLN-------------GGQ----PGKHLIQGIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLL 267 (274)
Q Consensus 205 igve~~~~~~~~-------------~~~----~~~~~~~gl~~~~~~~~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~ 267 (274)
|+|||.+++.+. .+. +.++.++|++.+..|..+..+.+|+++.|+|+|+++++++|++++|++
T Consensus 281 igVep~~s~~~~~~~~~~~~~~s~~~G~~~~~~~~tia~Gig~~~~~~~~~~~~vD~~v~Vsd~ea~~a~r~L~~~~Gl~ 360 (423)
T PLN02356 281 FLIDPPGSGLFNKVTRGVMYTREEAEGRRLKNPFDTITEGIGINRLTQNFLMAKLDGAFRGTDKEAVEMSRYLLKNDGLF 360 (423)
T ss_pred EEEecCCCccccccccchhhhhhhhcCCccCCCCCeecCcCcCCCCChhHhHHhCCcEEEECHHHHHHHHHHHHHHCCee
Confidence 999999986332 121 125778999988778888888999999999999999999999999999
Q ss_pred ecccCC
Q 024022 268 QRQLLY 273 (274)
Q Consensus 268 ~g~s~~ 273 (274)
+||||+
T Consensus 361 vg~Ssa 366 (423)
T PLN02356 361 VGSSSA 366 (423)
T ss_pred EeECHH
Confidence 999985
No 13
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=100.00 E-value=1.1e-57 Score=404.16 Aligned_cols=256 Identities=56% Similarity=0.906 Sum_probs=232.7
Q ss_pred CCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeE
Q 024022 16 GHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKL 95 (274)
Q Consensus 16 ~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~ 95 (274)
++|||++++++++..|.+||+|+|++|||||||+|++.+++.++.++|+..++.+ |+++|+||||+|+|++|+++|++|
T Consensus 1 g~TPl~~~~~l~~~~g~~i~~K~E~~~ptgS~K~R~a~~~l~~a~~~g~~~~~~~-vv~~SsGN~g~alA~~a~~~G~~~ 79 (291)
T cd01561 1 GNTPLVRLNRLSPGTGAEIYAKLEFFNPGGSVKDRIALYMIEDAEKRGLLKPGTT-IIEPTSGNTGIGLAMVAAAKGYRF 79 (291)
T ss_pred CCCCEEEccccCCCCCCeEEEEecccCCCCcchHHHHHHHHHHHHHcCCCCCCCE-EEEeCCChHHHHHHHHHHHcCCeE
Confidence 6899999999998888999999999999999999999999999999998766654 999999999999999999999999
Q ss_pred EEEeCCCCCHHHHHHHHHCCCEEEEeCCCC--ChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhh-hchHHHHHHhhC
Q 024022 96 IIIMPSTYSIERRIILRALGAEVYLADPAV--GFEGFVKKGEEILNRTPNGYILGQFENPANPEIHY-ETTGPEIWNDSG 172 (274)
Q Consensus 96 ~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~-~t~~~Ei~~q~~ 172 (274)
+||||.++++.|+++|+.+||+|+.++... +++++.+.+++++++.++++|+++|+||.+++ |+ .|+++||++|++
T Consensus 80 ~i~vp~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~-g~~~t~~~Ei~~ql~ 158 (291)
T cd01561 80 IIVMPETMSEEKRKLLRALGAEVILTPEAEADGMKGAIAKARELAAETPNAFWLNQFENPANPE-AHYETTAPEIWEQLD 158 (291)
T ss_pred EEEECCCCCHHHHHHHHHcCCEEEEeCCCCcCCHHHHHHHHHHHHhhCCCcEEecCCCCchHHH-HHHHHHHHHHHHHcC
Confidence 999999999999999999999999999652 34788888999887765799999999999996 55 499999999997
Q ss_pred CCCCEEEEecCCcccHHHHHHHHHhhCCCcEEEEEecCCCccccCCCCcccccccCCCCCCcccccccccCeEEEeCHHH
Q 024022 173 GKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVITVSSEE 252 (274)
Q Consensus 173 ~~~d~iv~~vG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~v~v~d~e 252 (274)
..||+||+|+|+||+++|++.+|++..|+++||+|||++++++.......+.++||+.+..+..+...++|+++.|+|+|
T Consensus 159 ~~~d~vv~~~G~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~V~d~e 238 (291)
T cd01561 159 GKVDAFVAGVGTGGTITGVARYLKEKNPNVRIVGVDPVGSVLFSGGPPGPHKIEGIGAGFIPENLDRSLIDEVVRVSDEE 238 (291)
T ss_pred CCCCEEEEeCChHHHHHHHHHHHHHhCCCCEEEEEecCCCcccCCCCCCCCcCCCCCCCCCCCccCchhCceeEEECHHH
Confidence 67999999999999999999999999999999999999998774444456778899887667777777899999999999
Q ss_pred HHHHHHHHHHHcCCEecccCC
Q 024022 253 AIETSKLLALKEGLLQRQLLY 273 (274)
Q Consensus 253 ~~~a~~~l~~~eGi~~g~s~~ 273 (274)
++++++.|++++|+++||||+
T Consensus 239 ~~~a~~~l~~~~gi~~epssa 259 (291)
T cd01561 239 AFAMARRLAREEGLLVGGSSG 259 (291)
T ss_pred HHHHHHHHHHHhCeeEcccHH
Confidence 999999999999999999974
No 14
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-58 Score=399.99 Aligned_cols=268 Identities=65% Similarity=1.019 Sum_probs=254.1
Q ss_pred hhHHHHhcccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHH
Q 024022 6 EIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLA 85 (274)
Q Consensus 6 ~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA 85 (274)
.+.+.....+|+|||+.++++.....++||+|+|.+||+||.|||.++.|+.+|+.+|.+.||.++++++||||+|.+||
T Consensus 41 ~~~~~~~~liG~TPlv~ln~i~~g~~~~i~~K~E~~~p~~SvKdRia~sMi~~Ae~~G~i~pg~stliEpTSGNtGigLA 120 (362)
T KOG1252|consen 41 LILWDVRDLIGNTPLVKLNKIAGGCVARIAAKLEYMNPGGSVKDRIAWSMIEDAEKKGLITPGKSTLIEPTSGNTGIGLA 120 (362)
T ss_pred hhhhhHHHHhCCCceEEeccccCCccceEEEEeeecCCcccHHHHHHHHHHHHHHHcCCccCCceEEEecCCCchHHHHH
Confidence 34567788999999999999877777899999999999999999999999999999999999988899999999999999
Q ss_pred HHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhH---HHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhc
Q 024022 86 FIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEG---FVKKGEEILNRTPNGYILGQFENPANPEIHYET 162 (274)
Q Consensus 86 ~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t 162 (274)
++|+..|++|+++||++++.+|+..|+++||+|++++....++. +...+.++..+.++.+.++||.||.|+..||.+
T Consensus 121 ~~~a~~Gyk~i~tmP~~ms~Ek~~~l~a~Gaeii~tp~a~~~~~~e~ai~~a~~l~~~~pna~~l~Qf~np~Np~~hy~t 200 (362)
T KOG1252|consen 121 YMAALRGYKCIITMPEKMSKEKRILLRALGAEIILTPPAAGMKGPESAIGKAEELLNKTPNAYILDQFHNPGNPLAHYET 200 (362)
T ss_pred HHHHHcCceEEEEechhhhHHHHHHHHHcCCEEEecChHHccCChHHHHHHHHHHHHhCCChHHHHHhcCCCCccccccc
Confidence 99999999999999999999999999999999999997666666 889999999999999999999999999999999
Q ss_pred hHHHHHHhhCCCCCEEEEecCCcccHHHHHHHHHhhCCCcEEEEEecCCCccccCCCCcc--cccccCCCCCCccccccc
Q 024022 163 TGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGK--HLIQGIGAGVIPPVLDVA 240 (274)
Q Consensus 163 ~~~Ei~~q~~~~~d~iv~~vG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~~~~~~~--~~~~gl~~~~~~~~~~~~ 240 (274)
+++||++|+.+++|.+|.++|||||++|+++++|+.+|+++|++|||..|..+..+.+.+ +.++|||.++.|..++..
T Consensus 201 tg~EI~~q~~g~vDi~V~gaGTGGTitgvGRylke~~~~~kVv~vdp~~S~~~~~~~~g~~~~~I~GIGyg~~p~~ld~~ 280 (362)
T KOG1252|consen 201 TGPEIWRQLDGKVDIFVAGAGTGGTITGVGRYLKEQNPNIKVVGVDPQESIVLSGGKPGPTFHKIQGIGYGFIPTTLDTK 280 (362)
T ss_pred ccHHHHHHhcCCCCEEEeccCCCceeechhHHHHHhCCCCEEEEeCCCcceeccCCCCCCCccceeccccCcCccccchH
Confidence 999999999999999999999999999999999999999999999999998887777766 889999999999999999
Q ss_pred ccCeEEEeCHHHHHHHHHHHHHHcCCEecccCC
Q 024022 241 MLDEVITVSSEEAIETSKLLALKEGLLQRQLLY 273 (274)
Q Consensus 241 ~~d~~v~v~d~e~~~a~~~l~~~eGi~~g~s~~ 273 (274)
.+|+++.++++|++.++|+|+.+||+++|.||.
T Consensus 281 ~vd~~~~~~~d~A~~~Ar~La~eeGll~G~SSG 313 (362)
T KOG1252|consen 281 LVDEVLKVSSDEAIEMARRLALEEGLLVGISSG 313 (362)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhhCeeecccch
Confidence 999999999999999999999999999999984
No 15
>PRK08526 threonine dehydratase; Provisional
Probab=100.00 E-value=6.3e-58 Score=420.22 Aligned_cols=262 Identities=22% Similarity=0.303 Sum_probs=233.4
Q ss_pred chhhhHHHHhcccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHH
Q 024022 3 DKCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGI 82 (274)
Q Consensus 3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~ 82 (274)
.+..+++++...+++|||+++++|++.+|.+||+|+|++|||||||+|++.+.+..+.+.+. .++||++|+||||+
T Consensus 6 ~i~~a~~~i~~~i~~TPl~~~~~Ls~~~g~~iylK~E~lqptGSfK~RgA~n~i~~l~~~~~----~~gVV~aSaGNhg~ 81 (403)
T PRK08526 6 KIYQAKQRISGFVNKTPFAYAPFLSKISGAEVYLKKENLQITGAYKIRGAYNKIANLSEEQK----QHGVIAASAGNHAQ 81 (403)
T ss_pred HHHHHHHHHhCcCCCCCccchHHHHHHhCCeEEEEecCCCCCCCCHHHHHHHHHHhccHhhc----CCEEEEECccHHHH
Confidence 45677889999999999999999998888999999999999999999999999999876654 34599999999999
Q ss_pred HHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhc
Q 024022 83 GLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYET 162 (274)
Q Consensus 83 alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t 162 (274)
++|++|+++|++|+||||++++..|++.++.|||+|+.++. +++++.+.+++++++. +++|++||+|+.++ .||+|
T Consensus 82 avA~aa~~~Gi~~~IvmP~~~p~~k~~~~r~~GA~Vv~~g~--~~~~a~~~a~~~a~~~-g~~~v~p~~~~~~i-~G~gt 157 (403)
T PRK08526 82 GVAISAKKFGIKAVIVMPEATPLLKVSGTKALGAEVILKGD--NYDEAYAFALEYAKEN-NLTFIHPFEDEEVM-AGQGT 157 (403)
T ss_pred HHHHHHHHcCCCEEEEEcCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEeeCCCCCHHHH-hhhHH
Confidence 99999999999999999999999999999999999999985 5899999999998886 78999999999887 69999
Q ss_pred hHHHHHHhhCCCCCEEEEecCCcccHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----cccccccCCCCCC
Q 024022 163 TGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQP-----GKHLIQGIGAGVI 233 (274)
Q Consensus 163 ~~~Ei~~q~~~~~d~iv~~vG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~----~~~~-----~~~~~~gl~~~~~ 233 (274)
+|.||++|++ ++|+||+|+|+||+++|++.++|+.+|++|||||||++++++. .+++ ..+.++|++....
T Consensus 158 ia~EI~eq~~-~~D~vvvpvGgGGl~aGia~~~k~~~p~~kvigVep~~~~~~~~s~~~g~~~~~~~~~tiadgiav~~~ 236 (403)
T PRK08526 158 IALEMLDEIS-DLDMVVVPVGGGGLISGIASAAKQINPNIKIIGVGAKGAPAMYESFHAKKIINSKSVRTIADGIAVRDA 236 (403)
T ss_pred HHHHHHHhcC-CCCEEEEecChHHHHHHHHHHHHHhCCCCEEEEEEECCCChHHHHHHcCCcccCCCCCceeccccCCCC
Confidence 9999999995 7999999999999999999999999999999999999998752 2332 3456678775421
Q ss_pred -c--ccccccccCeEEEeCHHHHHHHHHHHHHHcCCEecccCC
Q 024022 234 -P--PVLDVAMLDEVITVSSEEAIETSKLLALKEGLLQRQLLY 273 (274)
Q Consensus 234 -~--~~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~g~s~~ 273 (274)
| +...++++|+++.|+|+|+.+|+++|++++|+++|||++
T Consensus 237 ~~~~~~~~~~~vd~~v~V~d~ei~~A~~~l~~~~gi~ve~aga 279 (403)
T PRK08526 237 SPINLAIILECVDDFVQVDDEEIANAILFLLEKQKIVVEGAGA 279 (403)
T ss_pred CHHHHHHHHHhCCEEEEECHHHHHHHHHHHHHhcCcEeeHHHH
Confidence 2 233457999999999999999999999999999999974
No 16
>PLN02970 serine racemase
Probab=100.00 E-value=1.3e-57 Score=409.29 Aligned_cols=261 Identities=21% Similarity=0.237 Sum_probs=229.5
Q ss_pred hhhhHHHHhcccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHH
Q 024022 4 KCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIG 83 (274)
Q Consensus 4 ~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a 83 (274)
.....+++...+++|||++++++++..|.+||+|+|++|||||||||++.+++.++.+++. .+.||++|+||||+|
T Consensus 14 i~~a~~~i~~~i~~TPL~~~~~l~~~~g~~i~~K~E~~nptGSfKdRga~~~i~~~~~~~~----~~~vv~aSsGN~g~a 89 (328)
T PLN02970 14 IREARKRIAPFIHRTPVLTSSSLDALAGRSLFFKCECFQKGGAFKFRGACNAIFSLSDDQA----EKGVVTHSSGNHAAA 89 (328)
T ss_pred HHHHHHHHhCcCCCCCeeechhhHHhhCCeEEEEecCCCCCCCcHHHHHHHHHHHhhHhhc----CCeEEEECCcHHHHH
Confidence 3456788889999999999999988888899999999999999999999999999876553 345999999999999
Q ss_pred HHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhch
Q 024022 84 LAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETT 163 (274)
Q Consensus 84 lA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~ 163 (274)
+|++|+++|++|+||||+++++.|++.|+.+||+|+.++. +++.+.+.+++++++. +++|++||+|+.++ .||+|+
T Consensus 90 lA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~Vi~~~~--~~~~~~~~a~~la~~~-g~~~~~~~~n~~~~-~g~~t~ 165 (328)
T PLN02970 90 LALAAKLRGIPAYIVVPKNAPACKVDAVIRYGGIITWCEP--TVESREAVAARVQQET-GAVLIHPYNDGRVI-SGQGTI 165 (328)
T ss_pred HHHHHHHcCCCEEEEECCCCCHHHHHHHHhcCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEEeCCCCCcchh-hehHHH
Confidence 9999999999999999999999999999999999999995 3778888899988774 89999999999988 599999
Q ss_pred HHHHHHhhCCCCCEEEEecCCcccHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----cccccccCCCCC--
Q 024022 164 GPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQP-----GKHLIQGIGAGV-- 232 (274)
Q Consensus 164 ~~Ei~~q~~~~~d~iv~~vG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~----~~~~-----~~~~~~gl~~~~-- 232 (274)
++||++|++ .||+||+|+|+||+++|+++++|+.+|++|||+|||.+++++. .+++ .++.++|++.+.
T Consensus 166 g~Ei~~ql~-~~D~vv~~vG~GG~~~Gi~~~lk~~~~~~kvi~Vep~~~~~~~~s~~~g~~~~~~~~~tia~gl~~~~~~ 244 (328)
T PLN02970 166 ALEFLEQVP-ELDVIIVPISGGGLISGIALAAKAIKPSIKIIAAEPKGADDAAQSKAAGEIITLPVTNTIADGLRASLGD 244 (328)
T ss_pred HHHHHHhcc-CCCEEEEeeCchHHHHHHHHHHHhcCCCCEEEEEEECCCcHHHHHHHcCCceeCCCCCCccccccCCcCH
Confidence 999999995 6999999999999999999999999999999999999997653 2321 234556665531
Q ss_pred CcccccccccCeEEEeCHHHHHHHHHHHHHHcCCEecccCC
Q 024022 233 IPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLQRQLLY 273 (274)
Q Consensus 233 ~~~~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~g~s~~ 273 (274)
.++...++.+|+++.|+|+|+++++++|++++|+++||||+
T Consensus 245 ~~~~~~~~~~d~~v~V~d~e~~~a~~~la~~~gi~ve~s~a 285 (328)
T PLN02970 245 LTWPVVRDLVDDVITVDDKEIIEAMKLCYERLKVVVEPSGA 285 (328)
T ss_pred HHHHHHHhhCCEEEEECHHHHHHHHHHHHHhcCcEEeHHHH
Confidence 12334567899999999999999999999999999999985
No 17
>PRK06382 threonine dehydratase; Provisional
Probab=100.00 E-value=1.6e-57 Score=419.52 Aligned_cols=262 Identities=24% Similarity=0.304 Sum_probs=234.1
Q ss_pred chhhhHHHHhcccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHH
Q 024022 3 DKCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGI 82 (274)
Q Consensus 3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~ 82 (274)
+...+++++...+++|||+++++|++..|.+||+|+|++|||||||+|++.+++..+.+.+. .+.||++|+||||+
T Consensus 11 ~i~~a~~~~~~~i~~TPl~~~~~ls~~~g~~v~~K~E~~nptGSfK~Rga~~~i~~~~~~~~----~~gvv~aSsGN~g~ 86 (406)
T PRK06382 11 DILYAKSYLEGYLNRTPLIHSTTFGDEYGGDIYFKLENFQKTGSFKSRGAVFKFSKLSEDEL----RNGVITASAGNHAQ 86 (406)
T ss_pred HHHHHHHHHhCcCCCCCeeEhhhhHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHhcchhcc----CCeEEEECCCHHHH
Confidence 34567889999999999999999998888999999999999999999999999998876553 23499999999999
Q ss_pred HHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhc
Q 024022 83 GLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYET 162 (274)
Q Consensus 83 alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t 162 (274)
|+|++|+++|++|+||||++++..|++.++.|||+|+.++. +++++.+.+++++++. +++|++||+|+.++ .||+|
T Consensus 87 a~A~aa~~~G~~~~ivmp~~~~~~k~~~~~~~GA~Vv~~~~--~~~~a~~~a~~la~~~-~~~~v~~~~~~~~i-~g~~t 162 (406)
T PRK06382 87 GVAYAASINGIDAKIVMPEYTIPQKVNAVEAYGAHVILTGR--DYDEAHRYADKIAMDE-NRTFIEAFNDRWVI-SGQGT 162 (406)
T ss_pred HHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCEecCccCChHHH-HHHHH
Confidence 99999999999999999999999999999999999999985 4889999999998886 78999999999988 59999
Q ss_pred hHHHHHHhhCCCCCEEEEecCCcccHHHHHHHHHhhCCCcEEEEEecCCCccc----cCCCC-----cccccccCCCCC-
Q 024022 163 TGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVL----NGGQP-----GKHLIQGIGAGV- 232 (274)
Q Consensus 163 ~~~Ei~~q~~~~~d~iv~~vG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~----~~~~~-----~~~~~~gl~~~~- 232 (274)
+++||++|++ +||+||+|+|+||+++|+++++|..+|++|||||||++++++ ..+++ ..+.++|++.+.
T Consensus 163 ~~~Ei~eq~~-~~d~vvvpvG~GG~~~Gv~~~~k~~~p~~~vigVe~~~~~~~~~~~~~~~~~~~~~~~t~a~gl~~~~~ 241 (406)
T PRK06382 163 IGLEIMEDLP-DLDQIIVPVGGGGLISGIALAAKHINPNVKIIGIESELSDSMKASLREGKIVAHTSGVSICDGISVKYP 241 (406)
T ss_pred HHHHHHHhcC-CCCEEEEeeChHHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHcCCceecCCCCCccccccCCCc
Confidence 9999999995 799999999999999999999999999999999999999875 23332 345678887753
Q ss_pred --CcccccccccCeEEEeCHHHHHHHHHHHHHHcCCEecccCC
Q 024022 233 --IPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLQRQLLY 273 (274)
Q Consensus 233 --~~~~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~g~s~~ 273 (274)
.++.+.++++|+++.|+|+|+.+++++|++++|+++|||++
T Consensus 242 ~~~~~~~~~~~~d~~v~V~d~ei~~a~~~l~~~~gi~~epsga 284 (406)
T PRK06382 242 GDLTFDIAKNYVDDIVTVTEESVSKAIYKLFEREKIVAEPSGA 284 (406)
T ss_pred cHHHHHHHHHcCCEEEEECHHHHHHHHHHHHHHcCceechHHH
Confidence 23445678999999999999999999999999999999974
No 18
>PRK07476 eutB threonine dehydratase; Provisional
Probab=100.00 E-value=2e-57 Score=407.50 Aligned_cols=262 Identities=22% Similarity=0.302 Sum_probs=231.2
Q ss_pred chhhhHHHHhcccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHH
Q 024022 3 DKCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGI 82 (274)
Q Consensus 3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~ 82 (274)
.+...++++...+++|||++++++++.+|.+||+|+|++|||||||||++.+++.++.+.+. .++||++|+||||+
T Consensus 5 ~i~~a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~i~~a~~~~~----~~gvv~aSsGN~g~ 80 (322)
T PRK07476 5 DIYRARRRIAGRVRRTPLVASASLSARAGVPVWLKLETLQPTGSFKLRGATNALLSLSAQER----ARGVVTASTGNHGR 80 (322)
T ss_pred HHHHHHHHHhCCCCCCCceechhhHHhhCCeEEEEEccCCCCCCchHHHHHHHHHhhhhhhh----CCeEEEECCChHHH
Confidence 35678899999999999999999998888999999999999999999999999999998886 33499999999999
Q ss_pred HHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhc
Q 024022 83 GLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYET 162 (274)
Q Consensus 83 alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t 162 (274)
|+|++|+++|++|+||||+++++.|++.|+.|||+|+.++.+ ++++.+.+.+++++. +++|++||+||.++ .||+|
T Consensus 81 alA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~GA~V~~~~~~--~~~~~~~a~~~~~~~-g~~~~~~~~n~~~~-~g~~t 156 (322)
T PRK07476 81 ALAYAARALGIRATICMSRLVPANKVDAIRALGAEVRIVGRS--QDDAQAEVERLVREE-GLTMVPPFDDPRII-AGQGT 156 (322)
T ss_pred HHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHhc-CCEEeCCCCCccee-echhH
Confidence 999999999999999999999999999999999999999853 788889999988876 77999999999998 59999
Q ss_pred hHHHHHHhhCCCCCEEEEecCCcccHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----cccccccCCCCC-
Q 024022 163 TGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQP-----GKHLIQGIGAGV- 232 (274)
Q Consensus 163 ~~~Ei~~q~~~~~d~iv~~vG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~----~~~~-----~~~~~~gl~~~~- 232 (274)
+++||++|++ ++|+||+|+|+||+++|++++||..+|++|||+|||++++++. .+.+ ..+.+++++.+.
T Consensus 157 ~~~Ei~~Q~~-~~d~iv~~vG~GG~~~Gv~~~~k~~~~~~~vigVe~~~~~~~~~s~~~g~~~~~~~~~t~a~~l~~~~~ 235 (322)
T PRK07476 157 IGLEILEALP-DVATVLVPLSGGGLASGVAAAVKAIRPAIRVIGVSMERGAAMHASLAAGRPVQVEEVPTLADSLGGGIG 235 (322)
T ss_pred HHHHHHHhCc-CCCEEEEEcChHHHHHHHHHHHHHhCCCCEEEEEEECCchHHHHHHHcCCceeCCCCCCcccccccccc
Confidence 9999999995 6899999999999999999999999999999999999887543 2322 233455553221
Q ss_pred ----CcccccccccCeEEEeCHHHHHHHHHHHHHHcCCEecccCC
Q 024022 233 ----IPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLQRQLLY 273 (274)
Q Consensus 233 ----~~~~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~g~s~~ 273 (274)
.+..+.++.+|+++.|+|+|+++++++|++++|+++|||++
T Consensus 236 ~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~ve~a~a 280 (322)
T PRK07476 236 LDNRYTFAMCRALLDDVVLLDEAEIAAGIRHAYREERLVVEGAGA 280 (322)
T ss_pred CCcHHHHHHHHhcCCeEEEECHHHHHHHHHHHHHhcCceEeChhH
Confidence 23345567899999999999999999999999999999975
No 19
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=100.00 E-value=5.1e-57 Score=403.52 Aligned_cols=262 Identities=22% Similarity=0.286 Sum_probs=230.3
Q ss_pred chhhhHHHHhcccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHH
Q 024022 3 DKCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGI 82 (274)
Q Consensus 3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~ 82 (274)
+...+++++.+.+++|||++++++++.+|.+||+|+|++|||||||||++.+++.++.+... ..+||++|+||||+
T Consensus 5 ~i~~a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~ 80 (317)
T TIGR02991 5 DIERAAARISGRVEETPLVESPSLSELCGVPVHLKLEHRQTTGSFKLRGATNAVLSLSDTQR----AAGVVAASTGNHGR 80 (317)
T ss_pred HHHHHHHHHhCcCCCCCceechhhHHhhCCeEEEEeccCCCCCCcHHHHHHHHHHhhhHhcc----CCeEEEECCCHHHH
Confidence 45678899999999999999999988888899999999999999999999999998764322 23499999999999
Q ss_pred HHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhc
Q 024022 83 GLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYET 162 (274)
Q Consensus 83 alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t 162 (274)
|+|++|+++|++|+||||+++++.|++.|+.|||+|+.++. +++++.+.+++++++. +++|++||+||.++ .||+|
T Consensus 81 alA~~a~~~G~~~~v~~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-g~~~~~~~~n~~~~-~g~~t 156 (317)
T TIGR02991 81 ALAYAAAEEGVRATICMSELVPQNKVDEIRRLGAEVRIVGR--SQDDAQEEVERLVADR-GLTMLPPFDHPDIV-AGQGT 156 (317)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEeeCCCCChHHH-hhHHH
Confidence 99999999999999999999999999999999999999995 4788888999998876 78999999999998 59999
Q ss_pred hHHHHHHhhCCCCCEEEEecCCcccHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----cccccccCC--CC
Q 024022 163 TGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQP-----GKHLIQGIG--AG 231 (274)
Q Consensus 163 ~~~Ei~~q~~~~~d~iv~~vG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~----~~~~-----~~~~~~gl~--~~ 231 (274)
+++||++|++ ++|+||+|+|+||+++|+++++|+++|++|||+|||++++++. .+++ .++.+++++ .+
T Consensus 157 ~a~Ei~~q~~-~~d~vvv~~G~Gg~~~Gi~~~~k~~~p~~~vigvep~~~~~~~~s~~~g~~~~~~~~~tia~~l~~g~~ 235 (317)
T TIGR02991 157 LGLEVVEQMP-DLATVLVPLSGGGLASGVAMAVKAARPDTRVIGVSMERGAAMKASLQAGRPVLVAELPTLADSLGGGIG 235 (317)
T ss_pred HHHHHHHhCC-CCCEEEEEcChhHHHHHHHHHHHHhCCCCEEEEEEECCchHHHHHHHcCCcccCCCCCChhhhhhhccC
Confidence 9999999995 6899999999999999999999999999999999999877653 2322 234556553 22
Q ss_pred ---CCcccccccccCeEEEeCHHHHHHHHHHHHHHcCCEecccCC
Q 024022 232 ---VIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLQRQLLY 273 (274)
Q Consensus 232 ---~~~~~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~g~s~~ 273 (274)
..++++.++++|+++.|+|+|+++++++|++++|+++|||++
T Consensus 236 ~~~~~~~~~~~~~vd~~v~V~d~e~~~a~~~l~~~~g~~ve~s~a 280 (317)
T TIGR02991 236 LDNRVTFAMCKALLDEIVLVSEAEIAAGIRHAYAEEREIVEGAGA 280 (317)
T ss_pred CCCHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhCCcEEcchHH
Confidence 234556678999999999999999999999999999999975
No 20
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=100.00 E-value=2e-56 Score=418.88 Aligned_cols=264 Identities=44% Similarity=0.718 Sum_probs=232.9
Q ss_pred HHHHhcccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHH
Q 024022 8 KKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFI 87 (274)
Q Consensus 8 ~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~ 87 (274)
++.+...+++|||+++++++...|.+||+|+|++|||||||+|++.+++.++.++|++.+|.+ |+++|+||||+|+|++
T Consensus 2 ~~~~~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~-vv~~ssGN~g~alA~~ 80 (454)
T TIGR01137 2 RDNIIDLIGNTPLVRLNKVSKGIKCELLAKCEFFNPGGSVKDRIALRMIEDAEASGRLKPGDT-IIEPTSGNTGIGLALV 80 (454)
T ss_pred ccchHHhcCCCceEEccccCCCCCceEEEEEhhcCCCcchHHHHHHHHHHHHHHcCCCCCCCE-EEEeCCcHHHHHHHHH
Confidence 456777899999999999998888899999999999999999999999999999999888855 9999999999999999
Q ss_pred HHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChh---HHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhchH
Q 024022 88 AASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFE---GFVKKGEEILNRTPNGYILGQFENPANPEIHYETTG 164 (274)
Q Consensus 88 a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~ 164 (274)
|+++|++|+||||+++++.|+..++.+||+|+.++....++ ...+.+.+++++.++.+|++||+|+.++..||.|+|
T Consensus 81 a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~ 160 (454)
T TIGR01137 81 AAIKGYKCIIVLPEKMSNEKVDVLKALGAEIVRTPTAAAFDSPESHIGVAKRLVREIPGAHILDQYNNPSNPLAHYDGTG 160 (454)
T ss_pred HHHcCCeEEEEeCCCcCHHHHHHHHHCCCEEEEcCCccCCCchHHHHHHHHHHHHhCCCcEecccCCChhhHHHHHHhhH
Confidence 99999999999999999999999999999999998642233 235667777776446788999999999877999999
Q ss_pred HHHHHhhCCCCCEEEEecCCcccHHHHHHHHHhhCCCcEEEEEecCCCccccCCC------CcccccccCCCCCCccccc
Q 024022 165 PEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQ------PGKHLIQGIGAGVIPPVLD 238 (274)
Q Consensus 165 ~Ei~~q~~~~~d~iv~~vG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~~~~------~~~~~~~gl~~~~~~~~~~ 238 (274)
+||++|+++.||+||+|+||||+++|++.++|+.+|++|||+|||++++ +..+. ..++.+.|++.+..|..+.
T Consensus 161 ~Ei~~q~~~~~d~vv~~vG~Gg~~~G~~~~~~~~~~~~~vi~ve~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 239 (454)
T TIGR01137 161 PEILEQCEGKLDMFVAGAGTGGTITGIARYLKESNPKCRIVGADPEGSI-LAQPENLNKTGRTPYKVEGIGYDFIPTVLD 239 (454)
T ss_pred HHHHHHhCCCCCEEEEecCchHHHHHHHHHHHhhCCCCEEEEEecCCCc-ccCCCcccCCCCCCccCCCCCCCCCCCcCC
Confidence 9999999768999999999999999999999999999999999999986 33321 1235677888765666677
Q ss_pred ccccCeEEEeCHHHHHHHHHHHHHHcCCEecccCC
Q 024022 239 VAMLDEVITVSSEEAIETSKLLALKEGLLQRQLLY 273 (274)
Q Consensus 239 ~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~g~s~~ 273 (274)
.+.+|+++.|+|+|+++++++|++++|+++||||.
T Consensus 240 ~~~~d~~~~V~~~e~~~a~~~l~~~~gi~~~~ssg 274 (454)
T TIGR01137 240 RKVVDEWIKTDDKESFKMARRLIKEEGLLVGGSSG 274 (454)
T ss_pred chhCCeEEEECHHHHHHHHHHHHHHhCccCcHHHH
Confidence 78899999999999999999999999999999974
No 21
>PRK08198 threonine dehydratase; Provisional
Probab=100.00 E-value=5.2e-57 Score=416.65 Aligned_cols=262 Identities=26% Similarity=0.375 Sum_probs=232.7
Q ss_pred chhhhHHHHhcccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHH
Q 024022 3 DKCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGI 82 (274)
Q Consensus 3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~ 82 (274)
....+++++...+++|||+++++|++.+|.+||+|+|++|||||||+|++.+++.++.+++. .++||++|+||||+
T Consensus 8 ~i~~a~~~i~~~i~~TPl~~~~~ls~~~g~~i~~K~E~~nptGS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~ 83 (404)
T PRK08198 8 DIEEARERLKGVVRRTPLEYSRTLSELTGAEVYLKCENLQRTGSFKIRGAYNKIASLSEEER----ARGVVAASAGNHAQ 83 (404)
T ss_pred HHHHHHHHHhccCCCCCceehhhHHHHhCCEEEEEECCCCCCCCCHHHHHHHHHHhccHhhc----CCEEEEECCCHHHH
Confidence 34567889999999999999999998888999999999999999999999999999886554 35599999999999
Q ss_pred HHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhc
Q 024022 83 GLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYET 162 (274)
Q Consensus 83 alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t 162 (274)
++|++|+++|++|+||||++++..|+++++.|||+|+.++. +++++.+.+++++++. +++|++||+|+.++ .||+|
T Consensus 84 alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vi~~~~--~~~~~~~~a~~~~~~~-g~~~~~~~~~~~~~-~g~~t 159 (404)
T PRK08198 84 GVAYAASLLGIKATIVMPETAPLSKVKATRSYGAEVVLHGD--VYDEALAKAQELAEET-GATFVHPFDDPDVI-AGQGT 159 (404)
T ss_pred HHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEecCCCCCccHH-HHHHH
Confidence 99999999999999999999999999999999999999984 4889999999998886 78999999999988 59999
Q ss_pred hHHHHHHhhCCCCCEEEEecCCcccHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----cccccccCCCCC-
Q 024022 163 TGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQP-----GKHLIQGIGAGV- 232 (274)
Q Consensus 163 ~~~Ei~~q~~~~~d~iv~~vG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~----~~~~-----~~~~~~gl~~~~- 232 (274)
+|+||++|++ ++|+||+|+|+||+++|++.++|+.+|++|||||||++++++. .+++ ..+.++|++...
T Consensus 160 ~a~EI~~q~~-~~d~vv~~vG~GG~~~Gi~~~~k~~~p~~kiigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~g~~v~~~ 238 (404)
T PRK08198 160 IGLEILEDLP-DVDTVVVPIGGGGLISGVATAVKALRPEVRVIGVQAEGAPAMPESLAAGRPVELESVDTIADGIAVKRP 238 (404)
T ss_pred HHHHHHHhCC-CCCEEEEEeCHhHHHHHHHHHHHHhCCCCEEEEEEeCCChHHHHHHHcCCCEecCCCCccccccccCCc
Confidence 9999999995 7999999999999999999999999999999999999998753 3333 234456665432
Q ss_pred --CcccccccccCeEEEeCHHHHHHHHHHHHHHcCCEecccCC
Q 024022 233 --IPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLQRQLLY 273 (274)
Q Consensus 233 --~~~~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~g~s~~ 273 (274)
.++.+.++++|+++.|+|+|+.+++++|++++|+++|||++
T Consensus 239 ~~~~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~g~~~e~sga 281 (404)
T PRK08198 239 GDLTFEIIRELVDDVVTVSDEEIARAILLLLERAKLVVEGAGA 281 (404)
T ss_pred CHHHHHHHHHhCCEEEEECHHHHHHHHHHHHHhcCeEEehHHH
Confidence 23445678999999999999999999999999999999974
No 22
>PRK08638 threonine dehydratase; Validated
Probab=100.00 E-value=1e-56 Score=403.43 Aligned_cols=260 Identities=26% Similarity=0.342 Sum_probs=228.0
Q ss_pred hhhhHHHHhcccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHH
Q 024022 4 KCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIG 83 (274)
Q Consensus 4 ~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a 83 (274)
+..+++++...+++|||+++++|++..|.+||+|+|++|||||||||++.+++.++.+... ...|+++|+||||++
T Consensus 14 i~~a~~~i~~~i~~TPlv~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~i~~~~~~~~----~~~vv~~SsGN~g~a 89 (333)
T PRK08638 14 IIEAKQRLAGRIRKTPLPRSNYLSERCKGEIFLKLENMQRTGSFKIRGAFNKLSSLTDAEK----RKGVVACSAGNHAQG 89 (333)
T ss_pred HHHHHHHhhCcCcCCCceechhhHHhhCCeEEEEeccCCccCCcHHHHHHHHHHhccHHhc----CCeEEEeCCcHHHHH
Confidence 4667899999999999999999988888899999999999999999999999998765432 235999999999999
Q ss_pred HHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhch
Q 024022 84 LAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETT 163 (274)
Q Consensus 84 lA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~ 163 (274)
+|++|+++|++|+||||+++++.|+++++.+||+|+.+++ +++++.+.+++++++. +++|++||+||.++ .||.|+
T Consensus 90 lA~~aa~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~a~~~-g~~~~~~~~~~~~~-~g~~t~ 165 (333)
T PRK08638 90 VALSCALLGIDGKVVMPKGAPKSKVAATCGYGAEVVLHGD--NFNDTIAKVEEIVEEE-GRTFIPPYDDPKVI-AGQGTI 165 (333)
T ss_pred HHHHHHHcCCCEEEEeCCCCcHHHHHHHHHcCCEEEEECc--CHHHHHHHHHHHHHhc-CCEEcCcCCCcchh-ccccHH
Confidence 9999999999999999999999999999999999999984 4788999999998886 78999999999998 599999
Q ss_pred HHHHHHhhCCCCCEEEEecCCcccHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCCc-----ccccccCCCCCCc
Q 024022 164 GPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQPG-----KHLIQGIGAGVIP 234 (274)
Q Consensus 164 ~~Ei~~q~~~~~d~iv~~vG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~----~~~~~-----~~~~~gl~~~~~~ 234 (274)
++||++|+ +++|+||+|+|+||+++|++.+||+.+|++|||+|||++++++. .+.+. .+..+|++.. .|
T Consensus 166 a~Ei~~q~-~~~d~vv~~vG~Gg~~~Gv~~~lk~~~~~~~vigVep~g~~~~~~s~~~g~~~~~~~~~ti~~gl~~~-~p 243 (333)
T PRK08638 166 GLEILEDL-WDVDTVIVPIGGGGLIAGIAVALKSINPTIHIIGVQSENVHGMAASFYAGEITTHRTTGTLADGCDVS-RP 243 (333)
T ss_pred HHHHHhhc-CCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECCCchHHHHHHCCCcccCCCCCCeeccccCC-Cc
Confidence 99999999 47999999999999999999999999999999999999987533 34332 2234455433 23
Q ss_pred cccc----ccccCeEEEeCHHHHHHHHHHHHHHcCCEecccCC
Q 024022 235 PVLD----VAMLDEVITVSSEEAIETSKLLALKEGLLQRQLLY 273 (274)
Q Consensus 235 ~~~~----~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~g~s~~ 273 (274)
.++. ++++|+++.|+|+|+.+++++|++++|+++|||++
T Consensus 244 ~~~~~~~~~~~~d~~v~Vsd~ea~~a~~~l~~~~gi~~e~sgA 286 (333)
T PRK08638 244 GNLTYEIVRELVDDIVLVSEDEIRNAMKDLIQRNKVVTEGAGA 286 (333)
T ss_pred cHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCCeechhHH
Confidence 3332 47899999999999999999999999999999874
No 23
>PRK12483 threonine dehydratase; Reviewed
Probab=100.00 E-value=1.3e-56 Score=420.56 Aligned_cols=256 Identities=26% Similarity=0.324 Sum_probs=228.7
Q ss_pred HHhcccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHH
Q 024022 10 DVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAA 89 (274)
Q Consensus 10 ~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~ 89 (274)
++...+.+|||+++++|++.+|.+||+|+|++|||||||+|+|.+++..+.+... .+.||++|+||||+++|++|+
T Consensus 30 ~i~~~v~~TPL~~~~~Ls~~~g~~IylK~E~lqptGSfK~RGA~n~i~~l~~~~~----~~GVV~aSaGNha~gvA~aA~ 105 (521)
T PRK12483 30 RVYDVARETPLQRAPNLSARLGNQVLLKREDLQPVFSFKIRGAYNKMARLPAEQL----ARGVITASAGNHAQGVALAAA 105 (521)
T ss_pred HHhhhcCCCCeeEchhhhHhhCCEEEEEEcCCCCCCchHHHHHHHHHHHhHHHHh----cCcEEEECCCHHHHHHHHHHH
Confidence 6678899999999999999899999999999999999999999999998764332 234999999999999999999
Q ss_pred HcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhchHHHHHH
Q 024022 90 SRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWN 169 (274)
Q Consensus 90 ~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ 169 (274)
++|++|+||||.+++..|++.++.|||+|+.++. +++++.+.+++++++. +++|++||+||.++ +||+|+|.||++
T Consensus 106 ~lGi~~~IvmP~~tp~~Kv~~~r~~GAeVil~g~--~~d~a~~~A~~la~e~-g~~~v~pfdd~~vi-aGqgTig~EI~e 181 (521)
T PRK12483 106 RLGVKAVIVMPRTTPQLKVDGVRAHGGEVVLHGE--SFPDALAHALKLAEEE-GLTFVPPFDDPDVI-AGQGTVAMEILR 181 (521)
T ss_pred HhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhc-CCeeeCCCCChHHH-HHHHHHHHHHHH
Confidence 9999999999999999999999999999999984 5899999999999886 78999999999999 599999999999
Q ss_pred hhCCCCCEEEEecCCcccHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----cccccccCCCCC---Ccccc
Q 024022 170 DSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQP-----GKHLIQGIGAGV---IPPVL 237 (274)
Q Consensus 170 q~~~~~d~iv~~vG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~----~~~~-----~~~~~~gl~~~~---~~~~~ 237 (274)
|+++.+|+||+|+|+||+++|++.++|..+|++|||||||++++++. .+++ ..+.++|+++.. .++.+
T Consensus 182 Q~~~~~D~VvvpvGgGGliaGia~~~K~~~p~vkVIGVep~~a~~~~~sl~~g~~~~~~~~~t~adGiav~~~g~~~~~~ 261 (521)
T PRK12483 182 QHPGPLDAIFVPVGGGGLIAGIAAYVKYVRPEIKVIGVEPDDSNCLQAALAAGERVVLGQVGLFADGVAVAQIGEHTFEL 261 (521)
T ss_pred HhCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEEeCCCchhhHHHhcCCcccCCCCCceeceeccCCCCHHHHHH
Confidence 99767999999999999999999999999999999999999998764 2332 235667776543 23455
Q ss_pred cccccCeEEEeCHHHHHHHHHHHHHHcCCEecccCC
Q 024022 238 DVAMLDEVITVSSEEAIETSKLLALKEGLLQRQLLY 273 (274)
Q Consensus 238 ~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~g~s~~ 273 (274)
.++++|+++.|+|+|+.+++++|++++|+++|||++
T Consensus 262 ~~~~vd~vv~Vse~ei~~ai~~l~~~~~i~vEpagA 297 (521)
T PRK12483 262 CRHYVDEVVTVSTDELCAAIKDIYDDTRSITEPAGA 297 (521)
T ss_pred HHHhCCEEEEECHHHHHHHHHHHHHhCCcEEeHHHH
Confidence 678999999999999999999999999999999974
No 24
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=100.00 E-value=1.1e-56 Score=413.47 Aligned_cols=262 Identities=23% Similarity=0.313 Sum_probs=229.9
Q ss_pred hhhhHHHHhcccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHH
Q 024022 4 KCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIG 83 (274)
Q Consensus 4 ~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a 83 (274)
+..+.+++...+++|||+++++|++.+|.+||+|+|++|||||||+|++.+++..+.+... ...||++|+||||++
T Consensus 3 i~~a~~~i~~~i~~TPl~~~~~ls~~~g~~iy~K~E~~~ptGSfK~RgA~~~i~~l~~~~~----~~gvv~aSsGN~g~a 78 (409)
T TIGR02079 3 IEAARKRLKEVVPHTPLQLNERLSEKYGANIYLKREDLQPVRSYKIRGAYNFLKQLSDAQL----AKGVVCASAGNHAQG 78 (409)
T ss_pred HHHHHHHHhCcCCCCCccccHHHHHHhCCEEEEEecCCCCCCCcHHHHHHHHHHhCCHHhh----CCEEEEECccHHHHH
Confidence 4567899999999999999999998888999999999999999999999999987543322 234999999999999
Q ss_pred HHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEE---EEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhh
Q 024022 84 LAFIAASRGYKLIIIMPSTYSIERRIILRALGAEV---YLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHY 160 (274)
Q Consensus 84 lA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v---~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~ 160 (274)
+|++|+++|++|+||||++++..|++.++.+||+| +.++ .+++++.+.+++++++. +++|++||+||.++ .||
T Consensus 79 ~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~vv~v~~~g--~~~~~a~~~a~~~~~~~-g~~~~~~~~~~~~~-~g~ 154 (409)
T TIGR02079 79 FAYACRHLGVHGTVFMPATTPKQKIDRVKIFGGEFIEIILVG--DTFDQCAAAAREHVEDH-GGTFIPPFDDPRII-EGQ 154 (409)
T ss_pred HHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCCeeEEEEeC--CCHHHHHHHHHHHHHhc-CCEEeCCCCCHhHh-hhh
Confidence 99999999999999999999999999999999975 3444 45889999999998886 78999999999998 599
Q ss_pred hchHHHHHHhhCCCCCEEEEecCCcccHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----cccccccCCCC
Q 024022 161 ETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQP-----GKHLIQGIGAG 231 (274)
Q Consensus 161 ~t~~~Ei~~q~~~~~d~iv~~vG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~----~~~~-----~~~~~~gl~~~ 231 (274)
+|+++||++|+++.||+||+|+|+||+++|++.++|+.+|++|||||||++++++. .+++ ..+.++|++..
T Consensus 155 ~ti~~Ei~~q~~~~~D~vv~pvG~GG~~~Gia~~~k~~~p~~~vigVep~~~~~~~~s~~~g~~~~~~~~~t~a~g~~v~ 234 (409)
T TIGR02079 155 GTVAAEILDQLPEKPDYVVVPVGGGGLISGLTTYLAGTSPKTKIIGVEPEGAPSMKASLEAGEVVTLDKIDNFVDGAAVK 234 (409)
T ss_pred HHHHHHHHHhcCCCCCEEEEEecHhHHHHHHHHHHHHhCCCCEEEEEEeCCCCcHHHHHHCCCceecCCCCCeeccccCC
Confidence 99999999999767999999999999999999999999999999999999998754 2432 24567787765
Q ss_pred CCc---ccccccccCeEEEeCHHHHHHHHHHHHHHcCCEecccCC
Q 024022 232 VIP---PVLDVAMLDEVITVSSEEAIETSKLLALKEGLLQRQLLY 273 (274)
Q Consensus 232 ~~~---~~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~g~s~~ 273 (274)
..+ +.+.+.++|+++.|+|+|+.+|+++|++++|+++||||+
T Consensus 235 ~~g~~~~~~~~~~vd~vv~V~d~e~~~a~~~l~~~~gi~ve~aga 279 (409)
T TIGR02079 235 RVGDLNFKALKDVPDEVTLVPEGAVCTTILDLYNLEGIVAEPAGA 279 (409)
T ss_pred CCcHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHhcCceecchHH
Confidence 433 234567899999999999999999999999999999975
No 25
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia. D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.
Probab=100.00 E-value=2.1e-56 Score=407.82 Aligned_cols=256 Identities=20% Similarity=0.241 Sum_probs=222.4
Q ss_pred cCCCcceecccccCCCC--------ceEEEEeCCCCC-CCchhhHHHHHHHHH-----HHHcCCCCCCC-----------
Q 024022 15 IGHTPMVYLNNVVDGCV--------ARIAAKLEMMQP-CSSVKDRIAYSMIKD-----AEDKGLITPGK----------- 69 (274)
Q Consensus 15 ~~~TPl~~~~~l~~~~g--------~~l~~K~E~~np-tGS~K~R~a~~~~~~-----a~~~g~~~~g~----------- 69 (274)
+++|||++++++++.+| .+||+|+|++|| |||||||++.+++.. +++.|.+.||.
T Consensus 50 ~~~TPLv~~~~ls~~~g~~~~~~~~~~v~~K~E~~nP~tGSfKdRgA~~~i~~l~~~~a~~~G~l~pg~~~~~~~~~~~~ 129 (404)
T cd06447 50 IIESPLLPIPRMKQALEKLYHQPIKGRLLLKADSHLPISGSIKARGGIYEVLKHAEKLALEHGLLTLEDDYSKLASEKFR 129 (404)
T ss_pred ccCCCceehHHHHHHhccccccCcCceEEEEecCCCCCCCChHHHHHHHHHHHHhHHHHHHhCCCCcccchhhhhhhhhh
Confidence 99999999999887654 799999999999 999999999999864 77889888875
Q ss_pred -----eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCe
Q 024022 70 -----TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNG 144 (274)
Q Consensus 70 -----~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~ 144 (274)
++||++|+||||+++|++|+++|++|+||||+++++.|++.|+.+||+|+.++. +++++.+.+++++++.++.
T Consensus 130 ~~~~~~~VV~aSsGN~G~alA~~a~~~G~~~~IvvP~~~~~~K~~~ira~GAeVv~v~~--~~~~a~~~a~~la~~~~~~ 207 (404)
T cd06447 130 KLFSQYSIAVGSTGNLGLSIGIMAAALGFKVTVHMSADAKQWKKDKLRSKGVTVVEYET--DYSKAVEEGRKQAAADPMC 207 (404)
T ss_pred hcccCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHHCCCe
Confidence 369999999999999999999999999999999999999999999999999985 4889999999999887678
Q ss_pred EeeCCCCCCcchHhhhhchHHHHHHhhCC---C-----CCEEEEecCCcccHHHHHHHHHhh-CCCcEEEEEecCCCccc
Q 024022 145 YILGQFENPANPEIHYETTGPEIWNDSGG---K-----VDAFIAGIGTGGTVTGAGRFLKEK-NPNIKVYGIEPSESAVL 215 (274)
Q Consensus 145 ~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~---~-----~d~iv~~vG~Gg~~~Gi~~~~k~~-~~~~~vigve~~~~~~~ 215 (274)
+|+++++++..+ +||+|+++||++|+++ + ||+||+|+|+||+++|++++||+. .|+++||+|||++++.+
T Consensus 208 ~~v~~~n~~~~i-aG~~T~g~EI~eQl~~~~~~vD~~~Pd~VvvpvG~GGli~GIa~~lK~~~~p~~kVigVeP~~ap~~ 286 (404)
T cd06447 208 YFVDDENSRDLF-LGYAVAASRLKAQLAELGIKVDAEHPLFVYLPCGVGGAPGGVAFGLKLIFGDNVHCFFAEPTHSPCM 286 (404)
T ss_pred EeCCCCCchhHH-hhHHHHHHHHHHHhhhccCccccCCCCEEEEecCccHHHHHHHHHHHHhcCCCCEEEEEccCCChHH
Confidence 899997665555 7999999999999952 3 558999999999999999999997 78999999999998754
Q ss_pred c----CCCC-----------cccccccCCCCCC---cccccccccCeEEEeCHHHHHHHHHHHHHHcCCEecccCC
Q 024022 216 N----GGQP-----------GKHLIQGIGAGVI---PPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLQRQLLY 273 (274)
Q Consensus 216 ~----~~~~-----------~~~~~~gl~~~~~---~~~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~g~s~~ 273 (274)
. .+.. ..+.++||+++.. ++.+.++.+|+++.|+|+|+.+++++|++++|+++||||+
T Consensus 287 ~~s~~ag~~~~~~~~~~g~~~~TiadGl~~~~p~~~~~~~~~~~vd~~v~Vsd~ei~~a~r~La~~~gi~vepSgA 362 (404)
T cd06447 287 LLGMATGLHDKISVQDIGIDNRTAADGLAVGRPSGLVGKLMEPLLSGIYTVEDDELYRLLAMLKDSENIEVEPSAA 362 (404)
T ss_pred HHHHHcCCCccccccccCCCccchhhhhcCCCcchhHHHHHHHhCCcEEEECHHHHHHHHHHHHHHcCcEEeHHHH
Confidence 2 2211 2456778877642 2334467899999999999999999999999999999985
No 26
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=100.00 E-value=3e-56 Score=398.41 Aligned_cols=253 Identities=22% Similarity=0.256 Sum_probs=221.9
Q ss_pred CCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEE
Q 024022 17 HTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLI 96 (274)
Q Consensus 17 ~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~ 96 (274)
+|||++++++++..|.+||+|+|++|||||||||++.+++.+++++|. .++ ++||++|+||||+|+|++|+++|++|+
T Consensus 1 ~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~-~~~-~~vv~aSsGN~g~alA~~a~~~G~~~~ 78 (316)
T cd06448 1 KTPLIESTALSKTAGCNVFLKLENLQPSGSFKIRGIGHLCQKSAKQGL-NEC-VHVVCSSGGNAGLAAAYAARKLGVPCT 78 (316)
T ss_pred CCCccccchhhHhhCCeEEEEeccCCCcCChHHHHHHHHHHHHHHhhc-ccC-CeEEEeCCcHHHHHHHHHHHHcCCCEE
Confidence 699999999988788899999999999999999999999999999884 333 459999999999999999999999999
Q ss_pred EEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhchHHHHHHhhCC--C
Q 024022 97 IIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGG--K 174 (274)
Q Consensus 97 i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~--~ 174 (274)
||||+++++.|++.|+.+||+|+.++... ++++.+.+++++++.++++|++||+||.++ .||.|+++||++|+++ .
T Consensus 79 iv~p~~~~~~k~~~l~~~GA~v~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~n~~~~-~g~~t~~~Ei~~q~~~~~~ 156 (316)
T cd06448 79 IVVPESTKPRVVEKLRDEGATVVVHGKVW-WEADNYLREELAENDPGPVYVHPFDDPLIW-EGHSSMVDEIAQQLQSQEK 156 (316)
T ss_pred EEECCCCCHHHHHHHHHcCCEEEEECCch-HHHHHHHHHHHHhccCCcEEeCCCCCchhh-ccccHHHHHHHHHccccCC
Confidence 99999999999999999999999998642 566777788887765578999999999998 5999999999999976 5
Q ss_pred CCEEEEecCCcccHHHHHHHHHhhC-CCcEEEEEecCCCcccc----CCCC-----cccccccCCCCCCcc---cccccc
Q 024022 175 VDAFIAGIGTGGTVTGAGRFLKEKN-PNIKVYGIEPSESAVLN----GGQP-----GKHLIQGIGAGVIPP---VLDVAM 241 (274)
Q Consensus 175 ~d~iv~~vG~Gg~~~Gi~~~~k~~~-~~~~vigve~~~~~~~~----~~~~-----~~~~~~gl~~~~~~~---~~~~~~ 241 (274)
||+||+|+|+||+++|++++||+.+ |+++||+|||++++++. .+++ ..+.++|++.+..+. ...++.
T Consensus 157 ~D~vv~~vG~Gg~~~Gv~~~~k~~~~~~~~ii~Vep~g~~~~~~~~~~g~~~~~~~~~t~a~glg~~~~~~~~~~~~~~~ 236 (316)
T cd06448 157 VDAIVCSVGGGGLLNGIVQGLERNGWGDIPVVAVETEGAHSLNASLKAGKLVTLPKITSVATSLGAKTVSSQALEYAQEH 236 (316)
T ss_pred CCEEEEEeCchHHHHHHHHHHHhcCCCCCEEEEEeeCCChHHHHHHHcCCcEecCCCCchhhccCCCCcCHHHHHHHHhc
Confidence 9999999999999999999999996 99999999999997653 2322 235667888765543 233467
Q ss_pred cCeEEEeCHHHHHHHHHHHHHHcCCEecccCC
Q 024022 242 LDEVITVSSEEAIETSKLLALKEGLLQRQLLY 273 (274)
Q Consensus 242 ~d~~v~v~d~e~~~a~~~l~~~eGi~~g~s~~ 273 (274)
+|+++.|+|+|+++++++|++++||++||||+
T Consensus 237 ~~~~v~Vsd~e~~~a~~~l~~~~gi~~~~ssa 268 (316)
T cd06448 237 NIKSEVVSDRDAVQACLRFADDERILVEPACG 268 (316)
T ss_pred CCeEEEECHHHHHHHHHHHHHHcCceechhHH
Confidence 89999999999999999999999999999985
No 27
>PRK07048 serine/threonine dehydratase; Validated
Probab=100.00 E-value=2e-56 Score=401.14 Aligned_cols=262 Identities=20% Similarity=0.286 Sum_probs=227.8
Q ss_pred chhhhHHHHhcccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHH
Q 024022 3 DKCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGI 82 (274)
Q Consensus 3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~ 82 (274)
.....++++..++++|||++++++++..|.+||+|+|++|||||||||++.+++.++.+.+. .++||++|+||||+
T Consensus 10 ~i~~a~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~ 85 (321)
T PRK07048 10 DVAAAAARLAGVAHRTPVLTSRTADARTGAQVFFKCENFQRMGAFKFRGAYNALSQFSPEQR----RAGVVTFSSGNHAQ 85 (321)
T ss_pred HHHHHHHHhhCCCCCCCCccchhhHHhcCCeEEEEeccCCCCCCeeHHHHHHHHHhhhHhhc----CCcEEEeCCCHHHH
Confidence 34677899999999999999999988788899999999999999999999999999875432 34599999999999
Q ss_pred HHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhc
Q 024022 83 GLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYET 162 (274)
Q Consensus 83 alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t 162 (274)
|+|++|+++|++|++|||+++++.|++.|+.+||+|+.++.. ++++.+.+++++++. +++|++||+|+.++ .||+|
T Consensus 86 alA~~a~~~G~~~~vvvp~~~~~~k~~~~~~~GAeV~~~~~~--~~~~~~~a~~l~~~~-g~~~~~~~~~~~~~-~g~~t 161 (321)
T PRK07048 86 AIALSARLLGIPATIVMPQDAPAAKVAATRGYGGEVVTYDRY--TEDREEIGRRLAEER-GLTLIPPYDHPHVI-AGQGT 161 (321)
T ss_pred HHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC--HHHHHHHHHHHHHhc-CCEEECCCCCcchh-hccch
Confidence 999999999999999999999999999999999999999953 677888888888876 78999999999987 69999
Q ss_pred hHHHHHHhhCCCCCEEEEecCCcccHHHHHHHHHhhCCCcEEEEEecCCCccc----cCCCC-----cccccccCCCCC-
Q 024022 163 TGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVL----NGGQP-----GKHLIQGIGAGV- 232 (274)
Q Consensus 163 ~~~Ei~~q~~~~~d~iv~~vG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~----~~~~~-----~~~~~~gl~~~~- 232 (274)
+++||++|++ +||+||+|+|+||+++|++.++|+.+|+++||+|||++++++ ..++. ..+.++++....
T Consensus 162 ~~~EI~~q~~-~~D~vv~~vGtGG~~~Gi~~~~k~~~~~~~vigvep~~~~~~~~s~~~g~~~~~~~~~tia~g~~~~~~ 240 (321)
T PRK07048 162 AAKELFEEVG-PLDALFVCLGGGGLLSGCALAARALSPGCKVYGVEPEAGNDGQQSFRSGEIVHIDTPRTIADGAQTQHL 240 (321)
T ss_pred HHHHHHhhcC-CCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEeeCCChhHHHHHHcCCcccCCCCCCcccccccCCc
Confidence 9999999995 799999999999999999999999999999999999998753 23322 223445544321
Q ss_pred --CcccccccccCeEEEeCHHHHHHHHHHHHHHcCCEecccCC
Q 024022 233 --IPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLQRQLLY 273 (274)
Q Consensus 233 --~~~~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~g~s~~ 273 (274)
..+....+++|+++.|+|+|+++++++|++++|+++||||+
T Consensus 241 ~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~eps~a 283 (321)
T PRK07048 241 GNYTFPIIRRLVDDIVTVSDAELVDAMRFFAERMKIVVEPTGC 283 (321)
T ss_pred cHHHHHHHHHhCCceEEECHHHHHHHHHHHHHhCCceeccHHH
Confidence 12233457899999999999999999999999999999974
No 28
>PRK07334 threonine dehydratase; Provisional
Probab=100.00 E-value=1.8e-56 Score=412.29 Aligned_cols=262 Identities=21% Similarity=0.267 Sum_probs=233.4
Q ss_pred chhhhHHHHhcccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHH
Q 024022 3 DKCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGI 82 (274)
Q Consensus 3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~ 82 (274)
.+..+++++..++++|||++++++++.+|.+||+|+|++|||||||||++.+++.++.+... .+.||++|+||||+
T Consensus 9 ~i~~a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~i~~~~~~~~----~~~vv~aSsGN~g~ 84 (403)
T PRK07334 9 DIRAAAARLAGQVLRTPCVHSRTLSQITGAEVWLKFENLQFTASFKERGALNKLLLLTEEER----ARGVIAMSAGNHAQ 84 (403)
T ss_pred HHHHHHHHHhCCCCCCCccchHHHHHhhCCeEEEEeccCCCCCCchHHHHHHHHHhcCHHHh----CCcEEEECCcHHHH
Confidence 45677899999999999999999988888899999999999999999999999998764432 23499999999999
Q ss_pred HHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhc
Q 024022 83 GLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYET 162 (274)
Q Consensus 83 alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t 162 (274)
|+|++|+++|++|+||||+.+++.|+++++.+||+|+.++. +++++++.+++++++. +++|++||+||.++ .||+|
T Consensus 85 alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~--~~~~~~~~a~~l~~~~-~~~~~~~~~~~~~~-~g~~t 160 (403)
T PRK07334 85 GVAYHAQRLGIPATIVMPRFTPTVKVERTRGFGAEVVLHGE--TLDEARAHARELAEEE-GLTFVHPYDDPAVI-AGQGT 160 (403)
T ss_pred HHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECc--CHHHHHHHHHHHHHhc-CCEecCCCCCHHHH-HhHHH
Confidence 99999999999999999999999999999999999999974 4888999999998875 88999999999988 69999
Q ss_pred hHHHHHHhhCCCCCEEEEecCCcccHHHHHHHHHhhCCCcEEEEEecCCCccccC---CC----CcccccccCCCC---C
Q 024022 163 TGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNG---GQ----PGKHLIQGIGAG---V 232 (274)
Q Consensus 163 ~~~Ei~~q~~~~~d~iv~~vG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~~---~~----~~~~~~~gl~~~---~ 232 (274)
+++||++|++ ++|+||+|+|+||+++|+++++|..+|++|||+|||++++++.. +. ..++.++||+.+ .
T Consensus 161 ~~~Ei~~q~~-~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~~vi~ve~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~ 239 (403)
T PRK07334 161 VALEMLEDAP-DLDTLVVPIGGGGLISGMATAAKALKPDIEIIGVQTELYPSMYAAIKGVALPCGGSTIAEGIAVKQPGQ 239 (403)
T ss_pred HHHHHHhcCC-CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEECCCchHHHHHhCCCccCCCCCccceecCCCccH
Confidence 9999999994 79999999999999999999999999999999999999887642 11 134677888753 3
Q ss_pred CcccccccccCeEEEeCHHHHHHHHHHHHHHcCCEecccCC
Q 024022 233 IPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLQRQLLY 273 (274)
Q Consensus 233 ~~~~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~g~s~~ 273 (274)
.|+.++++.+|+++.|+|+|+++++++|++++|+++||||+
T Consensus 240 ~~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~gi~v~~s~a 280 (403)
T PRK07334 240 LTLEIVRRLVDDILLVSEADIEQAVSLLLEIEKTVVEGAGA 280 (403)
T ss_pred HHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCCEEechHH
Confidence 45566778999999999999999999999999999999975
No 29
>PRK08639 threonine dehydratase; Validated
Probab=100.00 E-value=2.2e-56 Score=413.30 Aligned_cols=265 Identities=23% Similarity=0.331 Sum_probs=230.3
Q ss_pred chhhhHHHHhcccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHH
Q 024022 3 DKCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGI 82 (274)
Q Consensus 3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~ 82 (274)
.+..+++++...+++|||++++++++..|.+||+|+|++|||||||+|+|.+++.++.+... ...||++|+||||+
T Consensus 11 ~i~~a~~~i~~~i~~TPl~~~~~ls~~~g~~l~~K~E~~~ptGSfK~RgA~~~i~~l~~~~~----~~~Vv~aSsGN~g~ 86 (420)
T PRK08639 11 DIDKAAKRLKDVVPETPLQRNDYLSEKYGANVYLKREDLQPVRSYKLRGAYNAISQLSDEEL----AAGVVCASAGNHAQ 86 (420)
T ss_pred HHHHHHHHHhCcCcCCCccchHHHHHHhCCEEEEEecCCCCCCCcHHHHHHHHHHhCCHHhh----CCEEEEECccHHHH
Confidence 34567889999999999999999998888999999999999999999999999988543221 24599999999999
Q ss_pred HHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeC-CCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhh
Q 024022 83 GLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLAD-PAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYE 161 (274)
Q Consensus 83 alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~ 161 (274)
++|++|+++|++|+||||++++..|++.++.|||+|+.+. ...+++++.+.+.+++++. +++|++||+|+.++ .||+
T Consensus 87 alA~~a~~~G~~~~IvmP~~~~~~k~~~~r~~GA~vv~v~~~g~~~~~a~~~a~~~a~~~-g~~~~~~~~~~~~~-~G~~ 164 (420)
T PRK08639 87 GVAYACRHLGIPGVIFMPVTTPQQKIDQVRFFGGEFVEIVLVGDTFDDSAAAAQEYAEET-GATFIPPFDDPDVI-AGQG 164 (420)
T ss_pred HHHHHHHHcCCCEEEEECCCChHHHHHHHHHcCCCeeEEEEeCcCHHHHHHHHHHHHHhc-CCcccCCCCChhHh-cchh
Confidence 9999999999999999999999999999999999754332 1245889999999999886 79999999999998 6999
Q ss_pred chHHHHHHhhCCC--CCEEEEecCCcccHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----cccccccCCC
Q 024022 162 TTGPEIWNDSGGK--VDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQP-----GKHLIQGIGA 230 (274)
Q Consensus 162 t~~~Ei~~q~~~~--~d~iv~~vG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~----~~~~-----~~~~~~gl~~ 230 (274)
|+|+||++|+++. ||+||+|+|+||+++|++.++|+.+|++|||||||++++++. .+.+ ..+.++|++.
T Consensus 165 tig~EI~eq~~~~~~~D~vv~~vG~GG~~aGva~~~k~~~p~~~vigVep~~~~~~~~s~~~g~~~~~~~~~t~a~gi~v 244 (420)
T PRK08639 165 TVAVEILEQLEKEGSPDYVFVPVGGGGLISGVTTYLKERSPKTKIIGVEPAGAASMKAALEAGKPVTLEKIDKFVDGAAV 244 (420)
T ss_pred HHHHHHHHhccccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECCCCcHHHHHhCCCceeCCCCCCeeccccc
Confidence 9999999999765 999999999999999999999999999999999999998753 2332 2456778876
Q ss_pred CCC---cccccccccCeEEEeCHHHHHHHHHHHHHHcCCEecccCC
Q 024022 231 GVI---PPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLQRQLLY 273 (274)
Q Consensus 231 ~~~---~~~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~g~s~~ 273 (274)
... ++.+.++++|+++.|+|+|+.+++++|++++|+++|||++
T Consensus 245 ~~~g~~~~~~~~~~vd~~v~V~d~ei~~a~~~l~~~~gi~~e~sga 290 (420)
T PRK08639 245 ARVGDLTFEILKDVVDDVVLVPEGAVCTTILELYNKEGIVAEPAGA 290 (420)
T ss_pred CCccHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCceecchHH
Confidence 543 3345578899999999999999999999999999999974
No 30
>PRK06110 hypothetical protein; Provisional
Probab=100.00 E-value=3.3e-56 Score=399.62 Aligned_cols=261 Identities=18% Similarity=0.214 Sum_probs=228.7
Q ss_pred hhhhHHHHhcccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHH
Q 024022 4 KCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIG 83 (274)
Q Consensus 4 ~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a 83 (274)
...+++++...+++|||+++++|++.+|.+||+|+|++|||||||+|++.+++.++.+++... ..|+++|+||||++
T Consensus 8 i~~a~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~Rga~~~l~~a~~~~~~~---~~vv~aSsGN~g~a 84 (322)
T PRK06110 8 LEAAAAVVYAAMPPTPQYRWPLLAERLGCEVWVKHENHTPTGAFKVRGGLVYFDRLARRGPRV---RGVISATRGNHGQS 84 (322)
T ss_pred HHHHHHHHhCcCcCCCcccchhHHHHhCCeEEEEeccCCCcCCcHHHHHHHHHHHhhhhcCCC---ceEEEECCCHHHHH
Confidence 456788999999999999999999888899999999999999999999999999998876433 34999999999999
Q ss_pred HHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhch
Q 024022 84 LAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETT 163 (274)
Q Consensus 84 lA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~ 163 (274)
+|++|+++|++|+||||+++++.|+++++.+||+|+.+++ +++++.+.+.++++++ +++|+++| ||.++ .||.|+
T Consensus 85 lA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~~~-~~~~~-~G~~t~ 159 (322)
T PRK06110 85 VAFAARRHGLAATIVVPHGNSVEKNAAMRALGAELIEHGE--DFQAAREEAARLAAER-GLHMVPSF-HPDLV-RGVATY 159 (322)
T ss_pred HHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEcCCC-CChHH-hccchH
Confidence 9999999999999999999999999999999999999974 4888999999988886 78999999 67777 599999
Q ss_pred HHHHHHhhCCCCCEEEEecCCcccHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----cccccccCCCCCC-
Q 024022 164 GPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQP-----GKHLIQGIGAGVI- 233 (274)
Q Consensus 164 ~~Ei~~q~~~~~d~iv~~vG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~----~~~~-----~~~~~~gl~~~~~- 233 (274)
++||++|++ ++|+||+|+|+||+++|++.++|+.+|++|||+|||++++++. .++. ..+.++|++....
T Consensus 160 ~~Ei~~q~~-~~D~vv~pvG~Gg~~~Gv~~~~k~~~~~~~vi~Vep~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~ 238 (322)
T PRK06110 160 ALELFRAVP-DLDVVYVPIGMGSGICGAIAARDALGLKTRIVGVVSAHAPAYALSFEAGRVVTTPVATTLADGMACRTPD 238 (322)
T ss_pred HHHHHhhCC-CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEeeCCChHHHHHHHcCCcccCCCCCCcccccCCCCcc
Confidence 999999995 6999999999999999999999999999999999999987653 3332 2345566654322
Q ss_pred c--ccccccccCeEEEeCHHHHHHHHHHHHHHcCCEecccCC
Q 024022 234 P--PVLDVAMLDEVITVSSEEAIETSKLLALKEGLLQRQLLY 273 (274)
Q Consensus 234 ~--~~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~g~s~~ 273 (274)
+ +.+.++++|+++.|+|+|+++++++|++++|+++||||+
T Consensus 239 ~~~~~~~~~~~d~~~~Vsd~e~~~a~~~l~~~~gi~~e~ssa 280 (322)
T PRK06110 239 PEALEVIRAGADRIVRVTDDEVAAAMRAYFTDTHNVAEGAGA 280 (322)
T ss_pred HHHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCcEEehHHH
Confidence 2 223457899999999999999999999999999999974
No 31
>PLN02550 threonine dehydratase
Probab=100.00 E-value=7.1e-56 Score=417.83 Aligned_cols=256 Identities=22% Similarity=0.299 Sum_probs=227.8
Q ss_pred HHhcccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHH
Q 024022 10 DVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAA 89 (274)
Q Consensus 10 ~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~ 89 (274)
++...+.+|||+++++|++.+|.+||+|+|++|||||||+|++.+.+..+.+... .+.||++|+||||+++|++|+
T Consensus 102 ~v~~~i~~TPL~~s~~LS~~~g~~IylK~E~lqptGSFK~RGA~n~I~~L~~e~~----~~GVV~aSaGNhAqgvA~aA~ 177 (591)
T PLN02550 102 KVYDVAIESPLQLAKKLSERLGVKVLLKREDLQPVFSFKLRGAYNMMAKLPKEQL----DKGVICSSAGNHAQGVALSAQ 177 (591)
T ss_pred hhhccccCChhhhhHHhhHhhCCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHhcC----CCCEEEECCCHHHHHHHHHHH
Confidence 4567899999999999999999999999999999999999999999998854432 234999999999999999999
Q ss_pred HcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhchHHHHHH
Q 024022 90 SRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWN 169 (274)
Q Consensus 90 ~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ 169 (274)
++|++|+||||++++..|++.++.|||+|+.++. +++++.+.+++++++. +++|++||+||.++ +||+|+|.||++
T Consensus 178 ~lGika~IvmP~~tp~~Kv~~~r~~GAeVvl~g~--~~dea~~~A~~la~e~-g~~fi~pfddp~vi-aGqgTig~EI~e 253 (591)
T PLN02550 178 RLGCDAVIAMPVTTPEIKWQSVERLGATVVLVGD--SYDEAQAYAKQRALEE-GRTFIPPFDHPDVI-AGQGTVGMEIVR 253 (591)
T ss_pred HcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEEECCCCChHHH-HHHHHHHHHHHH
Confidence 9999999999999999999999999999999984 4889999999998886 78999999999998 699999999999
Q ss_pred hhCCCCCEEEEecCCcccHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----cccccccCCCCC---Ccccc
Q 024022 170 DSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQP-----GKHLIQGIGAGV---IPPVL 237 (274)
Q Consensus 170 q~~~~~d~iv~~vG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~----~~~~-----~~~~~~gl~~~~---~~~~~ 237 (274)
|+++.+|+||+|+|+||+++|++.++|+.+|++|||||||++++++. .+++ ..+.++|+.+.. .++.+
T Consensus 254 Ql~~~~D~VvvpVGgGGLiaGia~~lK~l~p~vkVIGVEp~~a~~~~~s~~~G~~v~~~~~~tiAdGiav~~~G~~t~~i 333 (591)
T PLN02550 254 QHQGPLHAIFVPVGGGGLIAGIAAYVKRVRPEVKIIGVEPSDANAMALSLHHGERVMLDQVGGFADGVAVKEVGEETFRL 333 (591)
T ss_pred HcCCCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHhcCCccccCCCCCccceeecCCCCHHHHHH
Confidence 99656999999999999999999999999999999999999998763 3333 235567776543 23445
Q ss_pred cccccCeEEEeCHHHHHHHHHHHHHHcCCEecccCC
Q 024022 238 DVAMLDEVITVSSEEAIETSKLLALKEGLLQRQLLY 273 (274)
Q Consensus 238 ~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~g~s~~ 273 (274)
.++++|++|.|+|+|+.+|+++|++++|+++|||++
T Consensus 334 ~~~~vD~vV~Vsd~eI~~Ai~~l~e~~givvEpAGA 369 (591)
T PLN02550 334 CRELVDGVVLVSRDAICASIKDMFEEKRSILEPAGA 369 (591)
T ss_pred HHhhCCEEEEECHHHHHHHHHHHHHHCCCEEeHHHH
Confidence 678999999999999999999999999999999974
No 32
>PRK08813 threonine dehydratase; Provisional
Probab=100.00 E-value=1.1e-55 Score=396.41 Aligned_cols=252 Identities=23% Similarity=0.294 Sum_probs=223.5
Q ss_pred chhhhHHHHhcccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHH
Q 024022 3 DKCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGI 82 (274)
Q Consensus 3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~ 82 (274)
++...++++..++.+|||++++.+ +||+|+|++|||||||+|++.+++.++.+.+. .+.||++|+||||.
T Consensus 25 ~i~~A~~~i~~~i~~TPL~~~~~l------~v~lK~E~~nptGSfK~RgA~~~l~~a~~~~~----~~~VV~aSsGN~G~ 94 (349)
T PRK08813 25 DVLAAQARLRRYLSPTPLHYAERF------GVWLKLENLQRTGSYKVRGALNALLAGLERGD----ERPVICASAGNHAQ 94 (349)
T ss_pred HHHHHHHHHhCcCCCCCeEECCCC------cEEEEecCCCCcCCCHHHHHHHHHHHHHHcCC----CCeEEEECCCHHHH
Confidence 346678899999999999998765 49999999999999999999999999999886 33599999999999
Q ss_pred HHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhc
Q 024022 83 GLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYET 162 (274)
Q Consensus 83 alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t 162 (274)
|+|++|+++|++|+||||+++++.|++.++.|||+|+.++. +|+++.+.+++++++. +++|+++|+||.++ .||+|
T Consensus 95 alA~aa~~~Gi~~~IvvP~~~~~~K~~~i~~~GAeVv~~g~--~~~~a~~~a~~la~~~-g~~~v~~~~np~~i-~G~~T 170 (349)
T PRK08813 95 GVAWSAYRLGVQAITVMPHGAPQTKIAGVAHWGATVRQHGN--SYDEAYAFARELADQN-GYRFLSAFDDPDVI-AGQGT 170 (349)
T ss_pred HHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEcCccCChHHH-HHHHH
Confidence 99999999999999999999999999999999999999975 4899999999999886 89999999999999 59999
Q ss_pred hHHHHHHhhCCCCCEEEEecCCcccHHHHHHHHHhhCCCcEEEEEecCCCcccc---CCCC-----cccccccCCCCC--
Q 024022 163 TGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN---GGQP-----GKHLIQGIGAGV-- 232 (274)
Q Consensus 163 ~~~Ei~~q~~~~~d~iv~~vG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~---~~~~-----~~~~~~gl~~~~-- 232 (274)
+|+||++|. ||+||+|+|+||+++|++.++|+ +.++||||||++++++. .+.. ..+.++|++...
T Consensus 171 ig~EI~e~~---pD~VvvpvGgGGliaGia~~lk~--~~~rVigVqpega~~~~~s~~g~~~~~~~~~tiadgl~~~~p~ 245 (349)
T PRK08813 171 VGIELAAHA---PDVVIVPIGGGGLASGVALALKS--QGVRVVGAQVEGVDSMARAIRGDLREIAPVATLADGVKVKIPG 245 (349)
T ss_pred HHHHHHcCC---CCEEEEEeCccHHHHHHHHHHhc--CCCEEEEEEECCCchHHHHHcCCCcccCCCCceecccccCCcc
Confidence 999999974 79999999999999999999995 56999999999987642 1221 346778887542
Q ss_pred -CcccccccccCeEEEeCHHHHHHHHHHHHHHcCCEecccCC
Q 024022 233 -IPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLQRQLLY 273 (274)
Q Consensus 233 -~~~~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~g~s~~ 273 (274)
.++.+..+.+|+++.|+|+|+.+++++|++++|+++||||+
T Consensus 246 ~~~~~i~~~~vd~vv~Vsd~ei~~a~~~l~~~~gl~vE~aga 287 (349)
T PRK08813 246 FLTRRLCSSLLDDVVIVREAELRETLVRLALEEHVIAEGAGA 287 (349)
T ss_pred hhHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCcEEEEcHH
Confidence 34455678899999999999999999999999999999985
No 33
>PRK06608 threonine dehydratase; Provisional
Probab=100.00 E-value=1.2e-55 Score=397.24 Aligned_cols=262 Identities=18% Similarity=0.186 Sum_probs=228.1
Q ss_pred chhhhHHHHhcccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHH
Q 024022 3 DKCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGI 82 (274)
Q Consensus 3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~ 82 (274)
++..+++++...+++|||+++++|++.+|.+||+|+|++|||||||+|++.+++.++.++|.+. ++||++|+||||+
T Consensus 9 ~i~~A~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~---~~vv~~SsGN~g~ 85 (338)
T PRK06608 9 NIAAAHNRIKQYLHLTPIVHSESLNEMLGHEIFFKVESLQKTGAFKVRGVLNHLLELKEQGKLP---DKIVAYSTGNHGQ 85 (338)
T ss_pred HHHHHHHHHhCcCcCCCccchHhHHHHhCCEEEEEeCCCCCCCCcHHHHHHHHHHHhhhhcCcC---CeEEEECCCHHHH
Confidence 4567888999999999999999999888999999999999999999999999999999988642 3599999999999
Q ss_pred HHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhc
Q 024022 83 GLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYET 162 (274)
Q Consensus 83 alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t 162 (274)
++|++|+++|++|+||||+++++.|++.++.+||+|+.++. .+++.+.+++ +++ +++||++||+|+.++ .||+|
T Consensus 86 alA~~a~~~G~~~~vv~p~~~~~~k~~~l~~~GA~V~~~~~---~~~~~~~a~~-~~~-~~~~~~~~~~~~~~~-~g~~t 159 (338)
T PRK06608 86 AVAYASKLFGIKTRIYLPLNTSKVKQQAALYYGGEVILTNT---RQEAEEKAKE-DEE-QGFYYIHPSDSDSTI-AGAGT 159 (338)
T ss_pred HHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC---HHHHHHHHHH-HHh-CCCEEcCCCCCHHHh-ccHHH
Confidence 99999999999999999999999999999999999999974 3567777777 444 478999999999998 59999
Q ss_pred hHHHHHHhhCCCCCEEEEecCCcccHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC------cccccccCCCCC
Q 024022 163 TGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQP------GKHLIQGIGAGV 232 (274)
Q Consensus 163 ~~~Ei~~q~~~~~d~iv~~vG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~----~~~~------~~~~~~gl~~~~ 232 (274)
+++||++|++.+||+||+|+|+||+++|++.++|..+++++||+|||.+++++. .++. ..+..+|++.+.
T Consensus 160 ~a~Ei~~q~~~~~D~vv~~vG~GGt~~Gi~~~~k~~~~~~~vigVep~~~~~~~~s~~~g~~~~~~~~~~t~~~gl~~~~ 239 (338)
T PRK06608 160 LCYEALQQLGFSPDAIFASCGGGGLISGTYLAKELISPTSLLIGSEPLNANDAYLSLKNNKIYRLNYSPNTIADGLKTLS 239 (338)
T ss_pred HHHHHHHhcCCCcCEEEEeechhHHHHHHHHHHHhcCCCCEEEEEeeCCChHHHHHHHcCCeEeCCCCCCCeecccCCCC
Confidence 999999999768999999999999999999999999999999999999987532 3432 245667887643
Q ss_pred Cccc-cc-ccccCeEEEeCHHHHHHHHHHHHHHcCCEecccCC
Q 024022 233 IPPV-LD-VAMLDEVITVSSEEAIETSKLLALKEGLLQRQLLY 273 (274)
Q Consensus 233 ~~~~-~~-~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~g~s~~ 273 (274)
.... +. .+.+|+++.|+|+|+.+++++|++++|+++||||+
T Consensus 240 ~~~~~~~~~~~~d~~v~Vsd~e~~~a~~~l~~~~gi~vepssa 282 (338)
T PRK06608 240 VSARTFEYLKKLDDFYLVEEYEIYYWTAWLTHLLKVICEPSSA 282 (338)
T ss_pred CCHHHHHHHHhCCCEEEECHHHHHHHHHHHHHHcCcEEchHHH
Confidence 3211 21 13479999999999999999999999999999985
No 34
>PRK06815 hypothetical protein; Provisional
Probab=100.00 E-value=1.1e-55 Score=395.42 Aligned_cols=262 Identities=23% Similarity=0.271 Sum_probs=228.7
Q ss_pred chhhhHHHHhcccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHH
Q 024022 3 DKCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGI 82 (274)
Q Consensus 3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~ 82 (274)
....+++++.+.+++|||++++++++..|.+||+|+|++|||||||||++.+++.++.+... ..++|++|+||||+
T Consensus 6 ~i~~a~~~~~~~i~~TPLv~~~~l~~~~g~~i~~K~E~~nptgS~KdR~a~~~~~~l~~~~~----~~~vv~aSsGN~g~ 81 (317)
T PRK06815 6 AILEAHQRLRPQVRVTPLEHSPLLSQHTGCEVYLKCEHLQHTGSFKFRGASNKLRLLNEAQR----QQGVITASSGNHGQ 81 (317)
T ss_pred HHHHHHHHhhCCCCCCCccccHhHHHhhCCeEEEEecCCCCCCCcHHHHHHHHHHhcchhhc----CceEEEECCChHHH
Confidence 34667889999999999999999988888999999999999999999999999987654322 24499999999999
Q ss_pred HHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhc
Q 024022 83 GLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYET 162 (274)
Q Consensus 83 alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t 162 (274)
|+|++|+++|++|+||||.++++.|++.++.+||+|+.++.+ ++++...+++++++. +++|++||+|+.++ .||+|
T Consensus 82 alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~V~~~~~~--~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~-~g~~t 157 (317)
T PRK06815 82 GVALAAKLAGIPVTVYAPEQASAIKLDAIRALGAEVRLYGGD--ALNAELAARRAAEQQ-GKVYISPYNDPQVI-AGQGT 157 (317)
T ss_pred HHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC--HHHHHHHHHHHHHhc-CCEEecCCCChhhh-cchhH
Confidence 999999999999999999999999999999999999999964 778888888888875 78999999999888 59999
Q ss_pred hHHHHHHhhCCCCCEEEEecCCcccHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----cccccccCCCCCC
Q 024022 163 TGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQP-----GKHLIQGIGAGVI 233 (274)
Q Consensus 163 ~~~Ei~~q~~~~~d~iv~~vG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~----~~~~-----~~~~~~gl~~~~~ 233 (274)
+++||++|++ +||+||+|+|+||+++|++.++|+.+|+++||||||++++++. .+++ ..+.++|++.+..
T Consensus 158 ~a~Ei~~q~~-~~d~vv~~vG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~ 236 (317)
T PRK06815 158 IGMELVEQQP-DLDAVFVAVGGGGLISGIATYLKTLSPKTEIIGCWPANSPSLYTSLEAGEIVEVAEQPTLSDGTAGGVE 236 (317)
T ss_pred HHHHHHHhcC-CCCEEEEECcHHHHHHHHHHHHHHhCCCCEEEEEEeCCCCcHHHHHHCCCcccCCCCCChhhhhccCCc
Confidence 9999999995 6999999999999999999999999999999999999998653 2332 2345666644322
Q ss_pred ----cccccccccCeEEEeCHHHHHHHHHHHHHHcCCEecccCC
Q 024022 234 ----PPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLQRQLLY 273 (274)
Q Consensus 234 ----~~~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~g~s~~ 273 (274)
+..+.++++|+++.|+|+|+++++++|++++|+++||||.
T Consensus 237 ~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~la~~~gi~vepssg 280 (317)
T PRK06815 237 PGAITFPLCQQLIDQKVLVSEEEIKEAMRLIAETDRWLIEGAAG 280 (317)
T ss_pred ccHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCCeEecHHH
Confidence 2334567899999999999999999999999999999974
No 35
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=100.00 E-value=1.7e-55 Score=413.15 Aligned_cols=257 Identities=26% Similarity=0.337 Sum_probs=229.0
Q ss_pred HHHhcccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHH
Q 024022 9 KDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIA 88 (274)
Q Consensus 9 ~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a 88 (274)
.++...+.+|||+++++|++.+|.+||+|+|++|||||||+|+|.+++..+.+... .+.||++|+||||+++|++|
T Consensus 9 ~~v~~~i~~TPL~~~~~Ls~~~g~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~~----~~gVV~aSaGNha~~vA~aa 84 (499)
T TIGR01124 9 ARVYEAAQETPLQKAAKLSERLGNRILIKREDLQPVFSFKLRGAYNKMAQLSPEQK----ARGVIAASAGNHAQGVAFSA 84 (499)
T ss_pred hHhhCccCCCCeeehHHHHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHHhhHHhc----CCEEEEECCCHHHHHHHHHH
Confidence 36788999999999999999889999999999999999999999999998744332 34599999999999999999
Q ss_pred HHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhchHHHHH
Q 024022 89 ASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIW 168 (274)
Q Consensus 89 ~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~ 168 (274)
+++|++|+||||+++|..|++.++.+||+|+.++. +++++.+.+++++++. +++|++||+||.++ +||+|+|.||+
T Consensus 85 ~~~Gi~~~IvmP~~tp~~Kv~~~r~~GA~Vvl~g~--~~d~a~~~a~~la~~~-g~~~i~p~~~~~~i-~G~gtig~EI~ 160 (499)
T TIGR01124 85 ARLGLKALIVMPETTPDIKVDAVRGFGGEVVLHGA--NFDDAKAKAIELSQEK-GLTFIHPFDDPLVI-AGQGTLALEIL 160 (499)
T ss_pred HHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEeCc--CHHHHHHHHHHHHHhc-CCEeeCCCCChHHH-HhhHHHHHHHH
Confidence 99999999999999999999999999999999974 4889999999998886 78999999999998 69999999999
Q ss_pred HhhCCCCCEEEEecCCcccHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----cccccccCCCCC---Cccc
Q 024022 169 NDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQP-----GKHLIQGIGAGV---IPPV 236 (274)
Q Consensus 169 ~q~~~~~d~iv~~vG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~----~~~~-----~~~~~~gl~~~~---~~~~ 236 (274)
+|++.++|+||+|+|+||+++|++.++|+.+|++|||||||++++++. .+++ ..+.++|+++.. .++.
T Consensus 161 ~q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVIgVep~~~~~~~~s~~~g~~~~~~~~~t~adgiav~~~g~~~~~ 240 (499)
T TIGR01124 161 RQVANPLDAVFVPVGGGGLAAGVAALIKQLMPEIKVIGVEPTDSDCMKQALDAGEPVDLDQVGLFADGVAVKRVGDETFR 240 (499)
T ss_pred HhCCCCCCEEEEccCccHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHhcCCceeCCCCCCccCcccCCCccHHHHH
Confidence 999767999999999999999999999999999999999999998653 2332 234567776543 2445
Q ss_pred ccccccCeEEEeCHHHHHHHHHHHHHHcCCEecccCC
Q 024022 237 LDVAMLDEVITVSSEEAIETSKLLALKEGLLQRQLLY 273 (274)
Q Consensus 237 ~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~g~s~~ 273 (274)
+.++++|+++.|+|+|+.+|++.|++++|+++|||++
T Consensus 241 ~~~~~vd~vv~V~d~ei~~ai~~l~~~~gii~EpagA 277 (499)
T TIGR01124 241 LCQQYLDDIVTVDTDEVCAAIKDLFEDTRAVAEPAGA 277 (499)
T ss_pred HHHHhCCEEEEECHHHHHHHHHHHHHhcCcEEechHH
Confidence 6678999999999999999999999999999999974
No 36
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=100.00 E-value=1e-55 Score=405.06 Aligned_cols=247 Identities=25% Similarity=0.345 Sum_probs=222.3
Q ss_pred CcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEE
Q 024022 18 TPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLII 97 (274)
Q Consensus 18 TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i 97 (274)
|||+++++|++..|.+||+|+|++|||||||||++.+++.++.++++ .++||++|+||||+++|++|+++|++|+|
T Consensus 1 TPl~~~~~ls~~~g~~i~~K~E~~~ptgS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~alA~~a~~~G~~~~i 76 (380)
T TIGR01127 1 TPLIYSTTLSDITGSEVYLKLENLQKTGSFKIRGALNKIANLSEDQR----QRGVVAASAGNHAQGVAYAAKKFGIKAVI 76 (380)
T ss_pred CCceehHHHHHHhCCeEEEEecCCCCCCCcHHHHHHHHHHhcchhcc----CCEEEEECCCHHHHHHHHHHHHcCCCEEE
Confidence 89999999998889999999999999999999999999999988876 34599999999999999999999999999
Q ss_pred EeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhchHHHHHHhhCCCCCE
Q 024022 98 IMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDA 177 (274)
Q Consensus 98 ~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~ 177 (274)
|||++++..|++.++.+||+|+.++. +++++++.+++++++. +++|++||+|+.++ .||+|+++||++|++ ++|+
T Consensus 77 v~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~a~~~a~~~~~~~-~~~~~~~~~~~~~~-~g~~t~~~Ei~~q~~-~~D~ 151 (380)
T TIGR01127 77 VMPESAPPSKVKATKSYGAEVILHGD--DYDEAYAFATSLAEEE-GRVFVHPFDDEFVM-AGQGTIGLEIMEDIP-DVDT 151 (380)
T ss_pred EEcCCCcHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEecCCCCChhhh-hhhHHHHHHHHHhCC-CCCE
Confidence 99999999999999999999999984 4889999999998886 78999999999988 699999999999995 7999
Q ss_pred EEEecCCcccHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----cccccccCCCCC---CcccccccccCeE
Q 024022 178 FIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQP-----GKHLIQGIGAGV---IPPVLDVAMLDEV 245 (274)
Q Consensus 178 iv~~vG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~----~~~~-----~~~~~~gl~~~~---~~~~~~~~~~d~~ 245 (274)
||+|+|+||+++|++.++|+.+|++|||||||++++++. .+++ ..+.++|++... .++.+.++++|++
T Consensus 152 vv~~vG~Gg~~aGi~~~~k~~~p~~kvigVe~~~~~~~~~~~~~g~~~~~~~~~~~a~g~~~~~~~~~~~~~~~~~vd~~ 231 (380)
T TIGR01127 152 VIVPVGGGGLISGVASAAKQINPNVKVIGVEAEGAPSMYESLREGKIKAVESVRTIADGIAVKKPGDLTFNIIKEYVDDV 231 (380)
T ss_pred EEEEeChHHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHcCCceecCCCCCeecchhCCCccHHHHHHHHHhCCEE
Confidence 999999999999999999999999999999999998653 3432 235567776532 2334556899999
Q ss_pred EEeCHHHHHHHHHHHHHHcCCEecccCC
Q 024022 246 ITVSSEEAIETSKLLALKEGLLQRQLLY 273 (274)
Q Consensus 246 v~v~d~e~~~a~~~l~~~eGi~~g~s~~ 273 (274)
+.|+|+|+.+++++|++++|+++|||++
T Consensus 232 v~V~d~e~~~a~~~l~~~~gi~~e~s~a 259 (380)
T TIGR01127 232 VTVDEEEIANAIYLLLERHKILAEGAGA 259 (380)
T ss_pred EEECHHHHHHHHHHHHHhcCeEechHHH
Confidence 9999999999999999999999999974
No 37
>PRK02991 D-serine dehydratase; Provisional
Probab=100.00 E-value=3.2e-55 Score=404.50 Aligned_cols=256 Identities=21% Similarity=0.254 Sum_probs=222.8
Q ss_pred cCCCcceecccccCCCC--------ceEEEEeCCCCC-CCchhhHHHHHHHHH-----HHHcCCCCCCC-----------
Q 024022 15 IGHTPMVYLNNVVDGCV--------ARIAAKLEMMQP-CSSVKDRIAYSMIKD-----AEDKGLITPGK----------- 69 (274)
Q Consensus 15 ~~~TPl~~~~~l~~~~g--------~~l~~K~E~~np-tGS~K~R~a~~~~~~-----a~~~g~~~~g~----------- 69 (274)
+++|||++++.+++.+| .+||+|+|++|| |||||+|++.+++.. +++.|.+.|+.
T Consensus 73 ~~~TPL~~~~~l~~~~g~~~~~~~~~~V~lK~E~~np~tGSFK~RGA~~~i~~l~~~~a~~~G~~~~~~~~~~l~~~~~~ 152 (441)
T PRK02991 73 IIESPLVAIPAMQKALEKEYGQPISGRLLLKKDSHLPISGSIKARGGIYEVLKHAEKLALEAGLLTLDDDYSKLASPEFR 152 (441)
T ss_pred ccCCCceehHHHHHHhcccccCCcCceEEEEEcCCCCCcCChHHHHHHHHHHHhhHHHHHHhCCCCcCcchhhhcchhhh
Confidence 89999999999887664 699999999999 999999999999875 45778776663
Q ss_pred -----eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCe
Q 024022 70 -----TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNG 144 (274)
Q Consensus 70 -----~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~ 144 (274)
.+||++|+||||+|+|++|+++|++|+||||+++++.|++.|+.|||+|+.+++ +|+++.+.+++++++.+++
T Consensus 153 ~~~~~~~VV~aSsGN~G~alA~aA~~~G~~~tIvvP~~a~~~K~~~ir~~GAeVi~~~~--~~~~a~~~A~~la~~~~~~ 230 (441)
T PRK02991 153 QFFSQYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADARQWKKDKLRSHGVTVVEYEG--DYGVAVEEGRKAAESDPNC 230 (441)
T ss_pred hhccCcEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhcCCe
Confidence 359999999999999999999999999999999999999999999999999995 4889999999998876568
Q ss_pred EeeCCCCCCcchHhhhhchHHHHHHhhCC--------CCCEEEEecCCcccHHHHHHHHHhh-CCCcEEEEEecCCCccc
Q 024022 145 YILGQFENPANPEIHYETTGPEIWNDSGG--------KVDAFIAGIGTGGTVTGAGRFLKEK-NPNIKVYGIEPSESAVL 215 (274)
Q Consensus 145 ~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~--------~~d~iv~~vG~Gg~~~Gi~~~~k~~-~~~~~vigve~~~~~~~ 215 (274)
+|+++++++..+ .||+|+++||++|+++ .||+||+|+|+||+++|++.++|+. .|+++||+|||++++++
T Consensus 231 ~~~~~~~~~~~i-aG~~Tig~EI~eQl~~~~~~vD~~~Pd~VvvpvGgGGliaGia~~lk~~~~~~~kVigVEp~ga~~~ 309 (441)
T PRK02991 231 YFIDDENSRTLF-LGYAVAGLRLKAQLAEQGIVVDADHPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSPCM 309 (441)
T ss_pred EeCCCCCchhHH-HhHHHHHHHHHHHhhhccCccccCCCCEEEEEeCccHHHHHHHHHHHHhcCCCCEEEEEecCCChHH
Confidence 999999777776 6999999999999963 2679999999999999999999997 68899999999998754
Q ss_pred c----CCCC-----------cccccccCCCCCC---cccccccccCeEEEeCHHHHHHHHHHHHHHcCCEecccCC
Q 024022 216 N----GGQP-----------GKHLIQGIGAGVI---PPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLQRQLLY 273 (274)
Q Consensus 216 ~----~~~~-----------~~~~~~gl~~~~~---~~~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~g~s~~ 273 (274)
. .++. ..+.++||+++.. ++.+.++.+|+++.|+|+|+.+++++|++++|+++||||+
T Consensus 310 ~~s~~~G~~~~~~~~~~g~~~~Tiadgl~~~~~~~~~~~~~~~~vd~~v~VsD~ei~~a~~~L~~~~gi~vEpS~A 385 (441)
T PRK02991 310 LLGLMTGLHDQISVQDIGIDNLTAADGLAVGRASGFVGRAMERLLDGVYTVSDETLYRLLGLLADTEGIRLEPSAL 385 (441)
T ss_pred HHHHhcCCCcceeccccCCCCcchhhhhcCCCcchhHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCceeeHHHH
Confidence 2 2321 2356688877643 2334567899999999999999999999999999999985
No 38
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=100.00 E-value=3.4e-55 Score=390.62 Aligned_cols=262 Identities=25% Similarity=0.332 Sum_probs=231.6
Q ss_pred chhhhHHHHhcccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHH
Q 024022 3 DKCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGI 82 (274)
Q Consensus 3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~ 82 (274)
.+++.++.|...+++|||+++++|+..+|.+||+|+|++|||||||||++.+++.++++.+. ..+||++|+||||+
T Consensus 3 ~~~~~~~~i~~~ig~TPl~~~~~l~~~~g~~i~~K~E~~nptgS~Kdr~a~~~l~~~~~~~~----~~~iv~~ssGN~g~ 78 (304)
T cd01562 3 DILAAAARIKPVVRRTPLLTSPTLSELLGAEVYLKCENLQKTGSFKIRGAYNKLLSLSEEER----AKGVVAASAGNHAQ 78 (304)
T ss_pred HHHHHHHHHhCcCCCCCcccchhhHHHhCCeEEEEeccCCCcCCcHHHhHHHHHHhcCHhhc----CCcEEEECCCHHHH
Confidence 45778899999999999999999988888999999999999999999999999999987762 23499999999999
Q ss_pred HHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhc
Q 024022 83 GLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYET 162 (274)
Q Consensus 83 alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t 162 (274)
|+|++|+++|++|++|+|++++..|+++|+.+||+|+.++++ ++++.+.+++++++. +++|++||+|+.++ .||.+
T Consensus 79 alA~~a~~~G~~~~ivvp~~~~~~k~~~l~~~Ga~vi~~~~~--~~~~~~~a~~la~~~-~~~~~~~~~n~~~~-~g~~~ 154 (304)
T cd01562 79 GVAYAAKLLGIPATIVMPETAPAAKVDATRAYGAEVVLYGED--FDEAEAKARELAEEE-GLTFIHPFDDPDVI-AGQGT 154 (304)
T ss_pred HHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCCC--HHHHHHHHHHHHHhc-CCEEeCCCCCcchh-ccHHH
Confidence 999999999999999999999999999999999999999964 888999999998886 78999999999988 59999
Q ss_pred hHHHHHHhhCCCCCEEEEecCCcccHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----cccccccCCCCCC
Q 024022 163 TGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQP-----GKHLIQGIGAGVI 233 (274)
Q Consensus 163 ~~~Ei~~q~~~~~d~iv~~vG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~----~~~~-----~~~~~~gl~~~~~ 233 (274)
+++||++|++ .||+||+|+||||+++|+++++|..++++|||+|||.+++++. .+.. ..+...+++.+..
T Consensus 155 ~~~Ei~~q~~-~~d~vv~~vGtGgt~~Gi~~~lk~~~~~~kvigv~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~ 233 (304)
T cd01562 155 IGLEILEQVP-DLDAVFVPVGGGGLIAGIATAVKALSPNTKVIGVEPEGAPAMAQSLAAGKPVTLPEVDTIADGLAVKRP 233 (304)
T ss_pred HHHHHHHhcC-CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEECCCchHHHHHHcCCcccCCCCCcccccccCCCc
Confidence 9999999996 4999999999999999999999999999999999999987653 2322 1334456654422
Q ss_pred ---cccccccccCeEEEeCHHHHHHHHHHHHHHcCCEecccCC
Q 024022 234 ---PPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLQRQLLY 273 (274)
Q Consensus 234 ---~~~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~g~s~~ 273 (274)
++.+.++++|.++.|+|+|+++++++|+++||+++||||+
T Consensus 234 ~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~eGi~~~pss~ 276 (304)
T cd01562 234 GELTFEIIRKLVDDVVTVSEDEIAAAMLLLFEREKLVAEPAGA 276 (304)
T ss_pred hHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCceEchhHH
Confidence 2334567899999999999999999999999999999974
No 39
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase. This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.
Probab=100.00 E-value=1e-54 Score=399.69 Aligned_cols=257 Identities=20% Similarity=0.244 Sum_probs=223.3
Q ss_pred ccCCCcceecccccCCC--------CceEEEEeCCCCC-CCchhhHHHHHHHHH-----HHHcCCCCCCC----------
Q 024022 14 LIGHTPMVYLNNVVDGC--------VARIAAKLEMMQP-CSSVKDRIAYSMIKD-----AEDKGLITPGK---------- 69 (274)
Q Consensus 14 ~~~~TPl~~~~~l~~~~--------g~~l~~K~E~~np-tGS~K~R~a~~~~~~-----a~~~g~~~~g~---------- 69 (274)
++++|||++++++++.+ +.+||+|+|++|| |||||||++.+++.. +++.|.+.++.
T Consensus 67 ~~~~TPL~~~~~ls~~~~~~~~~~~~~~v~lKlE~~nP~tGSfKdRGA~~~i~~~~~~~A~~~G~l~~~~~~~~l~e~~~ 146 (431)
T TIGR02035 67 GIIESPLVEIFNMQKELEKKYQQEIPGRLLLKMDSHLPISGSIKARGGIYEVLKHAEELALEAGLLKLDDDYSILAEKKF 146 (431)
T ss_pred CccCCCccchHHHHHHhhhcccCCcCceEEEEecccCCccCCcHHHHHHHHHHHhhHHHHHHcCCCCcCcchhhhcchhh
Confidence 89999999999998743 5799999999999 999999999999865 77889887764
Q ss_pred ------eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCC
Q 024022 70 ------TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPN 143 (274)
Q Consensus 70 ------~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~ 143 (274)
.+||++|+||||+++|++|+++|++|+||||++++..|++.++.|||+|+.++. +|+++.+.+++++++.++
T Consensus 147 ~~~~~~~~Vv~aSsGN~G~slA~~Aa~lG~~~~IvmP~~a~~~K~~~ir~~GAeVv~~~~--~~~~a~~~A~~la~~~~~ 224 (431)
T TIGR02035 147 KDFFSRYSIAVGSTGNLGLSIGIISAALGFQVTVHMSADAKQWKKDKLRSKGVTVVEYES--DYGVAVEEGRKNADADPM 224 (431)
T ss_pred hhcccCceEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhcCC
Confidence 369999999999999999999999999999999999999999999999999995 489999999999988766
Q ss_pred eEeeCCCCCCcchHhhhhchHHHHHHhhCC--------CCCEEEEecCCcccHHHHHHHHHhh-CCCcEEEEEecCCCcc
Q 024022 144 GYILGQFENPANPEIHYETTGPEIWNDSGG--------KVDAFIAGIGTGGTVTGAGRFLKEK-NPNIKVYGIEPSESAV 214 (274)
Q Consensus 144 ~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~--------~~d~iv~~vG~Gg~~~Gi~~~~k~~-~~~~~vigve~~~~~~ 214 (274)
.+|+++. |+.++.+||+|+++||++|+++ .||+|++|+|+||+++|++.++|+. +|++|||+|||+++++
T Consensus 225 ~~~~d~~-n~~n~~aG~~T~g~EI~eQl~~~~~~~d~~~pd~V~vp~G~GGli~Gia~~lK~~~~~~vkvi~VEp~~s~~ 303 (431)
T TIGR02035 225 CYFVDDE-NSRNLFLGYAVAASRLKKQFDKKGIVVDKEHPLFVYLPCGVGGGPGGVAFGLKLAFGDNVHCFFAEPTHSPC 303 (431)
T ss_pred eEECCCC-CcccHHhhHHHHHHHHHHhhhccccccccCCCCEEEEEeCcCHHHHHHHHHHHHhcCCCCEEEEEeeCCCHH
Confidence 7888774 5555558999999999999953 4779999999999999999999997 8999999999999875
Q ss_pred cc----CCC-----------CcccccccCCCCCCcc---cccccccCeEEEeCHHHHHHHHHHHHHHcCCEecccCC
Q 024022 215 LN----GGQ-----------PGKHLIQGIGAGVIPP---VLDVAMLDEVITVSSEEAIETSKLLALKEGLLQRQLLY 273 (274)
Q Consensus 215 ~~----~~~-----------~~~~~~~gl~~~~~~~---~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~g~s~~ 273 (274)
+. .+. ...+.++||+++..+. .+.++++|+++.|+|+|+.+++++|++++|+++||||+
T Consensus 304 ~~~s~~~g~~~~~~~~~~g~~~~T~AdGlav~~p~~~~~~~~~~~vd~vv~VsD~ei~~a~~~L~~~egi~vEpSsa 380 (431)
T TIGR02035 304 MLLGVYTGLHEKISVQDIGIDNITAADGLAVGRPSGFVGRLMEPLLSGIYTVDDYTLYDLLRILAESEGKRLEPSAL 380 (431)
T ss_pred HHHHHhcCCCccccccccCCCCCceeccccCCCcchhHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCCeEcHHHH
Confidence 32 222 1246778888875332 23456899999999999999999999999999999974
No 40
>PRK08246 threonine dehydratase; Provisional
Probab=100.00 E-value=7.9e-55 Score=388.46 Aligned_cols=256 Identities=23% Similarity=0.317 Sum_probs=223.0
Q ss_pred chhhhHHHHhcccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHH
Q 024022 3 DKCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGI 82 (274)
Q Consensus 3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~ 82 (274)
.+..+++++...+++|||++++.+... +.+||+|+|++|||||||||++.+++.++.+ + .++||++|+||||+
T Consensus 9 ~i~~a~~~i~~~i~~TPl~~~~~l~~~-~~~i~~K~E~~nptGS~K~R~a~~~~~~~~~-~-----~~~vv~aSsGN~g~ 81 (310)
T PRK08246 9 DVRAAAQRIAPHIRRTPVLEADGAGFG-PAPVWLKLEHLQHTGSFKARGAFNRLLAAPV-P-----AAGVVAASGGNAGL 81 (310)
T ss_pred HHHHHHHHHhCcCCCCCeeeccccccC-CCEEEEEECCCCCCCCCHHHHHHHHHHhhcc-c-----CCeEEEeCCCHHHH
Confidence 346678899999999999999998876 7899999999999999999999999988765 2 24599999999999
Q ss_pred HHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhc
Q 024022 83 GLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYET 162 (274)
Q Consensus 83 alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t 162 (274)
|+|++|+++|++|+||||+.+++.|+.+++.+||+|+.++. .++++++.+.+++++. +++|++||+||.++ .||+|
T Consensus 82 a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-g~~~~~~~~n~~~i-~g~~t 157 (310)
T PRK08246 82 AVAYAAAALGVPATVFVPETAPPAKVARLRALGAEVVVVGA--EYADALEAAQAFAAET-GALLCHAYDQPEVL-AGAGT 157 (310)
T ss_pred HHHHHHHHcCCCEEEEECCCCcHHHHHHHHHCCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEeCCCCCChhhh-cchHH
Confidence 99999999999999999999999999999999999999985 3788889999988876 88999999999998 59999
Q ss_pred hHHHHHHhhCCCCCEEEEecCCcccHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCCccc-----ccccCCCCCC
Q 024022 163 TGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQPGKH-----LIQGIGAGVI 233 (274)
Q Consensus 163 ~~~Ei~~q~~~~~d~iv~~vG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~----~~~~~~~-----~~~gl~~~~~ 233 (274)
+++||++|++ .||+||+|+|+||+++|++.+++. .+|||+|||++++++. .+++... ..++++.+..
T Consensus 158 ~~~Ei~eq~~-~~D~iv~~vG~GG~~~Gi~~~~~~---~~~vi~ve~~~~~~~~~s~~~g~~~~~~~~~~~~~~l~~~~~ 233 (310)
T PRK08246 158 LGLEIEEQAP-GVDTVLVAVGGGGLIAGIAAWFEG---RARVVAVEPEGAPTLHAALAAGEPVDVPVSGIAADSLGARRV 233 (310)
T ss_pred HHHHHHHhcC-CCCEEEEecCccHHHHHHHHHhcC---CCEEEEEeeCCChHHHHHHHcCCcccCCCCCceeccccCCCc
Confidence 9999999994 799999999999999999999964 4899999999998654 3443222 2344554433
Q ss_pred ---cccccccccCeEEEeCHHHHHHHHHHHHHHcCCEecccCC
Q 024022 234 ---PPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLQRQLLY 273 (274)
Q Consensus 234 ---~~~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~g~s~~ 273 (274)
++.+.++.+|+++.|+|+|+++++++|++++|+++||||+
T Consensus 234 ~~~~~~~~~~~~~~~~~Vsd~e~~~a~~~l~~~egi~~e~s~a 276 (310)
T PRK08246 234 GEIAFALARAHVVTSVLVSDEAIIAARRALWEELRLAVEPGAA 276 (310)
T ss_pred cHHHHHHHHhcCCeEEEECHHHHHHHHHHHHHHcCceeehHHH
Confidence 3346678899999999999999999999999999999985
No 41
>PRK09224 threonine dehydratase; Reviewed
Probab=100.00 E-value=1e-54 Score=409.21 Aligned_cols=257 Identities=26% Similarity=0.337 Sum_probs=228.1
Q ss_pred HHHhcccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHH
Q 024022 9 KDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIA 88 (274)
Q Consensus 9 ~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a 88 (274)
.++...+.+|||+++++|++.+|.+||+|+|++|||||||+|+|.+++..+.+... .+.||++|+||||+++|++|
T Consensus 12 ~~v~~~~~~TPL~~~~~Ls~~~g~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~~----~~gvV~aSaGNha~avA~aa 87 (504)
T PRK09224 12 ARVYDVAQETPLEKAPKLSARLGNQVLLKREDLQPVFSFKLRGAYNKMAQLTEEQL----ARGVITASAGNHAQGVALSA 87 (504)
T ss_pred HHhcCcCCCCCceehhHhHHHhCCEEEEEecCCCCCCCChHHHHHHHHHhhhHHhc----CCEEEEECcCHHHHHHHHHH
Confidence 36788899999999999999889999999999999999999999999998764322 34599999999999999999
Q ss_pred HHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhchHHHHH
Q 024022 89 ASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIW 168 (274)
Q Consensus 89 ~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~ 168 (274)
+++|++|+||||++++..|++.++.+||+|+.++. +|+++.+.+++++++. +++|++||+||.++ +|++|++.||+
T Consensus 88 ~~lGi~~~IvmP~~tp~~K~~~~r~~GA~Vi~~g~--~~~~a~~~a~~l~~~~-g~~~v~~f~~~~~i-~G~gTi~~EI~ 163 (504)
T PRK09224 88 ARLGIKAVIVMPVTTPDIKVDAVRAFGGEVVLHGD--SFDEAYAHAIELAEEE-GLTFIHPFDDPDVI-AGQGTIAMEIL 163 (504)
T ss_pred HHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEeCCCCCcHHH-HhHHHHHHHHH
Confidence 99999999999999999999999999999999984 5899999999998885 88999999999998 69999999999
Q ss_pred HhhCCCCCEEEEecCCcccHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----cccccccCCCCCC---ccc
Q 024022 169 NDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQP-----GKHLIQGIGAGVI---PPV 236 (274)
Q Consensus 169 ~q~~~~~d~iv~~vG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~----~~~~-----~~~~~~gl~~~~~---~~~ 236 (274)
+|+++.+|+||+|+|+||+++|++.++|..+|++|||||||++++++. .+++ ..+.++|+++..+ ++.
T Consensus 164 ~q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVigVe~~~~~~~~~s~~~g~~~~~~~~~~~adg~av~~~g~~~~~ 243 (504)
T PRK09224 164 QQHPHPLDAVFVPVGGGGLIAGVAAYIKQLRPEIKVIGVEPEDSACLKAALEAGERVDLPQVGLFADGVAVKRIGEETFR 243 (504)
T ss_pred HhccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHhcCCCccCCCCCcccCcccCCCccHHHHH
Confidence 999756999999999999999999999999999999999999998753 3332 1234567765432 344
Q ss_pred ccccccCeEEEeCHHHHHHHHHHHHHHcCCEecccCC
Q 024022 237 LDVAMLDEVITVSSEEAIETSKLLALKEGLLQRQLLY 273 (274)
Q Consensus 237 ~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~g~s~~ 273 (274)
+.++++|+++.|+|+|+.+++++|++++|+++|||++
T Consensus 244 ~~~~~vd~~v~Vsd~ei~~a~~~l~~~~~~~~epagA 280 (504)
T PRK09224 244 LCQEYVDDVITVDTDEICAAIKDVFEDTRSIAEPAGA 280 (504)
T ss_pred HHHhcCCeEEEECHHHHHHHHHHHHHhcCeEEcHHHH
Confidence 5678999999999999999999999999999999974
No 42
>PRK06352 threonine synthase; Validated
Probab=100.00 E-value=6e-55 Score=395.09 Aligned_cols=255 Identities=22% Similarity=0.273 Sum_probs=218.4
Q ss_pred HHHhcccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHH
Q 024022 9 KDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIA 88 (274)
Q Consensus 9 ~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a 88 (274)
+++++.+|+|||+++++++..+|.+||+|+|++|||||||||++.+++.++.++|. ++||++|+||||+|+|++|
T Consensus 20 ~~~~l~~G~TPL~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~i~~a~~~g~-----~~vV~aSsGN~G~AlA~~a 94 (351)
T PRK06352 20 PMISLAEGNTPLIPLPNLSKELGVTLYGKYEGLNPTGSFKDRGMVMAVAKAKEEGA-----EAVICASTGNTSAAAAAYA 94 (351)
T ss_pred CccccCCCCCCeeEcHhhHHHhCCeEEEEecCCCCccChHHHHHHHHHHHHHHCCC-----CEEEEECCcHHHHHHHHHH
Confidence 35788999999999999988888899999999999999999999999999999885 4599999999999999999
Q ss_pred HHcCCeEEEEeCCC-CCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhchHHHH
Q 024022 89 ASRGYKLIIIMPST-YSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEI 167 (274)
Q Consensus 89 ~~~g~~~~i~~p~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei 167 (274)
+++|++|+||||++ .+..|+.+|+.+||+|+.++.+ ++++.+.+++++++. ++++.+ +.||.++ .||.|+++||
T Consensus 95 a~~G~~~~ivvp~~~~~~~k~~~~~a~GA~V~~~~~~--~~~~~~~a~~~~~~~-~~~~~~-~~n~~~~-~G~~t~~~EI 169 (351)
T PRK06352 95 TRAGLKAYIVIPEGKVALGKLAQAVMYGADIISIQGN--FDEALKSVRELAETE-AVTLVN-SVNPYRL-EGQKTAAFEI 169 (351)
T ss_pred HHcCCcEEEEEeCCCCcHHHHHHHHhcCCEEEEECCC--HHHHHHHHHHHHHhc-Cccccc-CCCccce-eeHHHHHHHH
Confidence 99999999999997 5899999999999999999854 788889999988775 666665 4599998 5999999999
Q ss_pred HHhhCCCCCEEEEecCCcccHHHHHHHHHhhCCC-----cEEEEEecCCCccccCCCCc---ccccccCCCCC-Cccccc
Q 024022 168 WNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPN-----IKVYGIEPSESAVLNGGQPG---KHLIQGIGAGV-IPPVLD 238 (274)
Q Consensus 168 ~~q~~~~~d~iv~~vG~Gg~~~Gi~~~~k~~~~~-----~~vigve~~~~~~~~~~~~~---~~~~~gl~~~~-~~~~~~ 238 (274)
++|++..||+||+|+|+||+++|++++||+++|+ ++||+|||++++++..+++. .+..++++.+. ..+...
T Consensus 170 ~~Q~~~~~D~vvv~vG~GG~~~Gi~~~lk~~~~~~~~~~~~vi~Vep~g~~~~~~g~~~~~~~~ia~~l~~~~~~~~~~~ 249 (351)
T PRK06352 170 CEQLGSAPDVLAIPVGNAGNISAYWKGFKEWNEAKASGLPRMHGFEAEGAAAIVQGKPIDNPETIATAIRIGNPASWGLA 249 (351)
T ss_pred HHHcCCCCCEEEEECCchHHHHHHHHHHHHHHhcCCCCCCEEEEEeeCCCCHHHhCCCcCCCCcceeEEEeCCCCcHHHH
Confidence 9999767999999999999999999999998877 89999999999876555442 23334544332 112222
Q ss_pred ccccC----eEEEeCHHHHHHHHHHHHHHcCCEecccCC
Q 024022 239 VAMLD----EVITVSSEEAIETSKLLALKEGLLQRQLLY 273 (274)
Q Consensus 239 ~~~~d----~~v~v~d~e~~~a~~~l~~~eGi~~g~s~~ 273 (274)
.+.+| .++.|+|+|+++++++|++++|+++||||+
T Consensus 250 ~~~~d~~~g~~~~V~d~e~~~a~r~la~~eGi~vepssa 288 (351)
T PRK06352 250 EAARDESGGYIHSVTDDEIVNAYKKIAAQDGVFIEPGSA 288 (351)
T ss_pred HHHHHHhCCEEEEECHHHHHHHHHHHHhhcCceEchhHH
Confidence 23344 489999999999999999999999999974
No 43
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=100.00 E-value=3e-54 Score=378.12 Aligned_cols=261 Identities=21% Similarity=0.264 Sum_probs=236.7
Q ss_pred hhhHHHHhcccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHH
Q 024022 5 CEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGL 84 (274)
Q Consensus 5 ~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~al 84 (274)
...+.++...+-.|||.++-.|++..|.++|+|+|++||+||||.||+.+++...-++++ ...|+++|.||||.++
T Consensus 54 ~~~~~~i~~~~~~TPl~~s~~lS~~~g~~vyLK~E~lQpsgSFK~RGa~~~~~kla~~~~----~~gViasSaGNha~a~ 129 (457)
T KOG1250|consen 54 SSAHFKIYPVIVETPLLKSVALSKKAGMPVYLKREDLQPSGSFKIRGAGNALQKLAKQQK----KAGVIASSAGNHAQAA 129 (457)
T ss_pred hhhhhccccceecccchhhhhhhhhcCCceEEEehhcccccceehhhHHHHHHHHHHhhh----cCceEEecCccHHHHH
Confidence 445667888899999999989999999999999999999999999999999998877765 4569999999999999
Q ss_pred HHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhchH
Q 024022 85 AFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTG 164 (274)
Q Consensus 85 A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~ 164 (274)
|++|+++|+|++||||..+|..|++.++.+||+|+..+. +|+++...|.++++++ ++.|+++||+|+.+ +|++|++
T Consensus 130 Ayaa~~LgipaTIVmP~~tp~~kiq~~~nlGA~Vil~G~--~~deAk~~a~~lAke~-gl~yI~pfDhP~I~-aGqgTig 205 (457)
T KOG1250|consen 130 AYAARKLGIPATIVMPVATPLMKIQRCRNLGATVILSGE--DWDEAKAFAKRLAKEN-GLTYIPPFDHPDIW-AGQGTIG 205 (457)
T ss_pred HHHHHhcCCceEEEecCCChHHHHHHHhccCCEEEEecc--cHHHHHHHHHHHHHhc-CceecCCCCCchhh-cCcchHH
Confidence 999999999999999999999999999999999999985 4899999999999997 99999999999999 6999999
Q ss_pred HHHHHhhCCCCCEEEEecCCcccHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----cccccccCCCCCC--
Q 024022 165 PEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQP-----GKHLIQGIGAGVI-- 233 (274)
Q Consensus 165 ~Ei~~q~~~~~d~iv~~vG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~----~~~~-----~~~~~~gl~~~~~-- 233 (274)
.||++|++..++.|+||||+||+++||+.++|+..|+++|||||+++|.++. .|++ ..+.++|++...+
T Consensus 206 ~EIl~ql~~~~~AI~vpVGGGGLiaGIat~vk~~~p~vkIIGVEt~~a~~f~~sl~~g~~V~lp~i~s~AdglaV~~Vg~ 285 (457)
T KOG1250|consen 206 LEILEQLKEPDGAIVVPVGGGGLIAGIATGVKRVGPHVKIIGVETEGAHSFNASLKAGKPVTLPKITSLADGLAVKTVGE 285 (457)
T ss_pred HHHHHhhcCCCCeEEEecCCchhHHHHHHHHHHhCCCCceEEEeecCcHHHHHHHhcCCeeecccccchhcccccchhhH
Confidence 9999999766669999999999999999999999999999999999998764 4443 3456788887543
Q ss_pred -cccccccccCeEEEeCHHHHHHHHHHHHHHcCCEecccCC
Q 024022 234 -PPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLQRQLLY 273 (274)
Q Consensus 234 -~~~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~g~s~~ 273 (274)
++.+.+.++|.++.|+|+|+..++.+|...|.+++|||++
T Consensus 286 ~tf~~a~~~~d~vvvV~~~ei~aaI~~l~edek~vvEpAga 326 (457)
T KOG1250|consen 286 NTFELAQKLVDRVVVVEDDEIAAAILRLFEDEKMVVEPAGA 326 (457)
T ss_pred HHHHHHHhcCceEEEeccHHHHHHHHHHHHhhhheeccchH
Confidence 4556778999999999999999999999999999999974
No 44
>PRK08197 threonine synthase; Validated
Probab=100.00 E-value=7.5e-54 Score=393.84 Aligned_cols=255 Identities=23% Similarity=0.217 Sum_probs=221.3
Q ss_pred HHhcccCCCcceecccccCCCC-ceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHH
Q 024022 10 DVTELIGHTPMVYLNNVVDGCV-ARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIA 88 (274)
Q Consensus 10 ~i~~~~~~TPl~~~~~l~~~~g-~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a 88 (274)
.++++.|+|||++++++++.+| .+||+|+|++|||||||||++.+++.+|++.|. .+|+++|+||||+|+|++|
T Consensus 72 ~vslgeG~TPL~~~~~l~~~~G~~~l~~K~E~~nPtGSfKdRga~~~i~~a~~~g~-----~~vv~aSsGN~g~alA~~a 146 (394)
T PRK08197 72 IVSLGEGMTPLLPLPRLGKALGIGRLWVKDEGLNPTGSFKARGLAVGVSRAKELGV-----KHLAMPTNGNAGAAWAAYA 146 (394)
T ss_pred CCccCcCCCCceEhHHHHHHhCCCcEEEEeCCCCCCcCcHHhHHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHHHH
Confidence 3788899999999999988888 599999999999999999999999999999885 4599999999999999999
Q ss_pred HHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhchHHHHH
Q 024022 89 ASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIW 168 (274)
Q Consensus 89 ~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~ 168 (274)
+++|++|+||||+++++.|+.+++.+||+|+.++++ ++++.+.+++++++. ++++++++.||.+++ |++|+++||+
T Consensus 147 a~~G~~~~v~vp~~~~~~k~~~~~~~GA~Vi~v~~~--~~~~~~~a~~~~~~~-g~~~~~~~~np~~ie-G~~t~a~Ei~ 222 (394)
T PRK08197 147 ARAGIRATIFMPADAPEITRLECALAGAELYLVDGL--ISDAGKIVAEAVAEY-GWFDVSTLKEPYRIE-GKKTMGLELA 222 (394)
T ss_pred HHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHhc-CcccccCCCCccchh-cHHHHHHHHH
Confidence 999999999999999999999999999999999864 788888898888876 799999999999994 9999999999
Q ss_pred HhhCCC-CCEEEEecCCcccHHHHHHHHHhh-------CCCcEEEEEecCCCcccc----CCCC-------cccccccCC
Q 024022 169 NDSGGK-VDAFIAGIGTGGTVTGAGRFLKEK-------NPNIKVYGIEPSESAVLN----GGQP-------GKHLIQGIG 229 (274)
Q Consensus 169 ~q~~~~-~d~iv~~vG~Gg~~~Gi~~~~k~~-------~~~~~vigve~~~~~~~~----~~~~-------~~~~~~gl~ 229 (274)
+|++++ ||+||+|+|+||+++|++++|+++ .+.+|||+|||++++++. .+.. ..+.++++.
T Consensus 223 eQl~~~~pD~vvvpvG~Gg~~~Gi~~~~k~~~~~g~~~~~~p~ii~Vq~~g~~~l~~~~~~g~~~~~~~~~~~tia~gl~ 302 (394)
T PRK08197 223 EQLGWRLPDVILYPTGGGVGLIGIWKAFDELEALGWIGGKRPRLVAVQAEGCAPIVKAWEEGKEESEFWEDAHTVAFGIR 302 (394)
T ss_pred HHcCCCCCCEEEEeCCChHHHHHHHHHHHHHHHcCCcCCCCCeEEEEEeCCCCHHHHHHHcCCCccccCCCCCceehhhh
Confidence 999754 999999999999999999999987 388999999999997653 2221 123445554
Q ss_pred CCCCcc--c---ccccccCeEEEeCHHHHHHHHHHHHHHcCCEecccCC
Q 024022 230 AGVIPP--V---LDVAMLDEVITVSSEEAIETSKLLALKEGLLQRQLLY 273 (274)
Q Consensus 230 ~~~~~~--~---~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~g~s~~ 273 (274)
.+.... . ..++..+.++.|+|+|+++++++|+++|||++||||+
T Consensus 303 ~~~~~~~~~~~~~~~~~~g~~v~V~d~e~~~a~~~la~~eGi~vepssa 351 (394)
T PRK08197 303 VPKALGDFLVLDAVRETGGCAIAVSDDAILAAQRELAREEGLFACPEGA 351 (394)
T ss_pred CCCCCCHHHHHHHHHHhCCEEEEeCHHHHHHHHHHHHhcCCceECchHH
Confidence 432111 1 1235667899999999999999999999999999985
No 45
>PRK06721 threonine synthase; Reviewed
Probab=100.00 E-value=2.6e-53 Score=384.71 Aligned_cols=255 Identities=25% Similarity=0.301 Sum_probs=218.3
Q ss_pred HHHHhcccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHH
Q 024022 8 KKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFI 87 (274)
Q Consensus 8 ~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~ 87 (274)
.+++++.+++|||++++++++..|.+||+|+|++|||||||||++.+++.++.++|. .+||++|+||||+|+|++
T Consensus 19 ~~~~~l~~G~TPl~~l~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~i~~a~~~g~-----~~vV~aSsGN~G~alA~~ 93 (352)
T PRK06721 19 TPDVSLMEGNTPLIPLLNISKQLGIQLYGKYEGANPTGSFKDRGMVMAVAKAKEEGS-----EAIICASTGNTSASAAAY 93 (352)
T ss_pred CCccccCcCCCCeeEchhhHHHhCCeEEEEecCCCCccchHHHHHHHHHHHHHHCCC-----CEEEEECCcHHHHHHHHH
Confidence 445788899999999999988788899999999999999999999999999999884 459999999999999999
Q ss_pred HHHcCCeEEEEeCCCC-CHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhchHHH
Q 024022 88 AASRGYKLIIIMPSTY-SIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPE 166 (274)
Q Consensus 88 a~~~g~~~~i~~p~~~-~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~E 166 (274)
|+++|++|+||||++. ++.|+++|+.+||+|+.+++ +++++.+.+++++++. ++++.+ +.||.++ .||.|+++|
T Consensus 94 aa~~G~~~~vvvp~~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~-~~n~~~~-~G~~t~~~E 168 (352)
T PRK06721 94 AARLGMKCIIVIPEGKIAHGKLAQAVAYGAEIISIEG--NFDDALKAVRNIAAEE-PITLVN-SVNPYRI-EGQKTAAFE 168 (352)
T ss_pred HHHCCCcEEEEECCCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhC-Cceecc-CCCchhh-hhhhhHHHH
Confidence 9999999999999974 88999999999999999985 4788889999988876 566665 5688888 499999999
Q ss_pred HHHhhCCCCCEEEEecCCcccHHHHHH----HHHhhC-CCcEEEEEecCCCccccCCCC---cccccccCCCCCCccc--
Q 024022 167 IWNDSGGKVDAFIAGIGTGGTVTGAGR----FLKEKN-PNIKVYGIEPSESAVLNGGQP---GKHLIQGIGAGVIPPV-- 236 (274)
Q Consensus 167 i~~q~~~~~d~iv~~vG~Gg~~~Gi~~----~~k~~~-~~~~vigve~~~~~~~~~~~~---~~~~~~gl~~~~~~~~-- 236 (274)
|++|++..||+||+|+|+||+++|++. .+|..+ |+++||+|||++++++..+.. ..+..++++.+. |..
T Consensus 169 i~eq~~~~~D~ivv~vG~GG~l~G~~~G~~~~lk~~~~~~~~vigVep~~~~~~~~g~~~~~~~tia~~l~~~~-~~~~~ 247 (352)
T PRK06721 169 ICDQLQRAPDVLAIPVGNAGNITAYWKGFCEYEKEKGYKKPRIHGFEAEGAAAIVKGHVIDEPETIATAIRIGN-PASWS 247 (352)
T ss_pred HHHHhCCCCCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCCeEEEEecCCCChHhhCCcCCCCCceeeccccCC-CCCHH
Confidence 999997679999999999999998554 445554 899999999999987765433 234556666543 211
Q ss_pred ----ccccccCeEEEeCHHHHHHHHHHHHHHcCCEecccCC
Q 024022 237 ----LDVAMLDEVITVSSEEAIETSKLLALKEGLLQRQLLY 273 (274)
Q Consensus 237 ----~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~g~s~~ 273 (274)
..+.++|+++.|+|+|+++++++|+++||+++||||+
T Consensus 248 ~~~~~~~~~~~~~~~V~d~e~~~a~~~la~~eGi~vepssg 288 (352)
T PRK06721 248 YAVEAAEQSHGEIDMVSDEEILHAYRLLAKSEGVFAEPGSN 288 (352)
T ss_pred HHHHHHHhcCCEEEEECHHHHHHHHHHHHHhcCcccCchHH
Confidence 1245789999999999999999999999999999984
No 46
>PRK07591 threonine synthase; Validated
Probab=100.00 E-value=1.7e-53 Score=393.76 Aligned_cols=256 Identities=20% Similarity=0.240 Sum_probs=222.8
Q ss_pred HHhcccCCCcceecccccCCCC-ceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHH
Q 024022 10 DVTELIGHTPMVYLNNVVDGCV-ARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIA 88 (274)
Q Consensus 10 ~i~~~~~~TPl~~~~~l~~~~g-~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a 88 (274)
++++.+|+|||+++++|++.+| .+||+|+|++|||||||||++.+++.+|++.|. .+|+++|+||||+|+|++|
T Consensus 82 ~v~l~eG~TPLv~~~~l~~~lG~~~l~~K~E~~nPtGSfKdRga~~~v~~A~~~g~-----~~vv~aSsGN~g~alA~~a 156 (421)
T PRK07591 82 PVDLGPGFTPLVKADRLARELGLKNLYIKDDSVNPTHSFKDRVVSVALTAARELGF-----TTVACASTGNLANSVAAHA 156 (421)
T ss_pred CCcCCCCCCcceEhHHHHHHhCCCcEEEEeCCCCCccChHHHHHHHHHHHHHHcCC-----CEEEEeCCCHHHHHHHHHH
Confidence 4788999999999999998888 599999999999999999999999999999985 4599999999999999999
Q ss_pred HHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhchHHHHH
Q 024022 89 ASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIW 168 (274)
Q Consensus 89 ~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~ 168 (274)
+++|++|+||||++++..|+.+++.+||+|+.++++ ++++.+.+++++++.++++|++++.||..+ .|++|+++||+
T Consensus 157 a~~Gl~~~I~vP~~~~~~k~~~~~~~GA~Vi~v~g~--~d~a~~~a~~~~~~~~~~~~~n~~~~p~~i-eG~~Tia~Ei~ 233 (421)
T PRK07591 157 ARAGLDSCVFIPADLEAGKIVGTLVYGPTLVAVDGN--YDDVNRLCSELANEHEGWGFVNINLRPYYA-EGSKTLGYEVA 233 (421)
T ss_pred HHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHhcCCEEEecCCCCcccc-cchHHHHHHHH
Confidence 999999999999999999999999999999999964 889999999998876578899988899988 59999999999
Q ss_pred HhhCCC-CCEEEEecCCcccHHHHHHHHHhh-------CCCcEEEEEecCCCcccc----CCCC------cccccccCCC
Q 024022 169 NDSGGK-VDAFIAGIGTGGTVTGAGRFLKEK-------NPNIKVYGIEPSESAVLN----GGQP------GKHLIQGIGA 230 (274)
Q Consensus 169 ~q~~~~-~d~iv~~vG~Gg~~~Gi~~~~k~~-------~~~~~vigve~~~~~~~~----~~~~------~~~~~~gl~~ 230 (274)
+|++++ ||+||+|+|+||+++|++.+|+++ .+.+|||+|||++++++. .+.. ..+.+++|..
T Consensus 234 eQl~~~~pD~iv~pvG~Gg~~~Gv~~g~kel~~~g~i~~~~prii~Vq~~g~~~~~~~~~~g~~~~~~~~~~tia~~l~~ 313 (421)
T PRK07591 234 EQLGWRLPDQVVAPLASGSLLTKIDKGFQELIKVGLVEDKPVRVFGAQAEGCSPIAQAFKEGRDVVKPVKPNTIAKSLAI 313 (421)
T ss_pred HHcCCCCCCEEEEeCCchHHHHHHHHHHHHHHhcCCccCCCceEEEEecCCCCHHHHHHHcCCCcccCCCCCchhhheec
Confidence 999765 999999999999999999999998 578999999999976653 2221 2344555543
Q ss_pred CCCc-----ccccccccCeEEEeCHHHHHHHHHHHHHHcCCEecccCC
Q 024022 231 GVIP-----PVLDVAMLDEVITVSSEEAIETSKLLALKEGLLQRQLLY 273 (274)
Q Consensus 231 ~~~~-----~~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~g~s~~ 273 (274)
+... ....++..+.++.|+|+|+++++++|++++||++||||+
T Consensus 314 ~~p~~~~~~~~~i~~~~g~~v~Vsd~ei~~a~~~la~~eGi~~epssa 361 (421)
T PRK07591 314 GNPADGPYALDIARRTGGAIEDVTDEEIIEGIKLLARTEGIFTETAGG 361 (421)
T ss_pred CCCCCcHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhcCCeeecchHH
Confidence 3211 112345677899999999999999999999999999975
No 47
>PRK07409 threonine synthase; Validated
Probab=100.00 E-value=2.6e-53 Score=385.37 Aligned_cols=254 Identities=24% Similarity=0.278 Sum_probs=219.3
Q ss_pred HHHhcccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHH
Q 024022 9 KDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIA 88 (274)
Q Consensus 9 ~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a 88 (274)
+++++++|+|||++++.|+...|.+||+|+|++|||||||||++.+++.+++++|. .+||++|+||||+++|++|
T Consensus 23 ~~~~l~~g~TPl~~~~~l~~~~g~~i~~K~E~~nptGSfKdR~a~~~l~~a~~~g~-----~~iv~aSsGN~g~alA~~a 97 (353)
T PRK07409 23 PVVTLGEGNTPLIPAPNLSELLGVEVYVKYEGLNPTGSFKDRGMTMAVTKAKEEGA-----KAVICASTGNTSASAAAYA 97 (353)
T ss_pred CcccCCCCCCCEEEchhhHHHhCCeEEEEecCCCCccchHHHHHHHHHHHHHHCCC-----CEEEEECCcHHHHHHHHHH
Confidence 34788999999999999988778899999999999999999999999999999885 4599999999999999999
Q ss_pred HHcCCeEEEEeCCC-CCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhchHHHH
Q 024022 89 ASRGYKLIIIMPST-YSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEI 167 (274)
Q Consensus 89 ~~~g~~~~i~~p~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei 167 (274)
+++|++|+||||+. .+..|++.|+.+||+|+.+++ .++++.+.+++++++. +++++++ .||.++ .||.|+++||
T Consensus 98 ~~~G~~~~ivvP~~~~~~~k~~~~~~~GA~Vi~~~~--~~~~~~~~a~~l~~~~-~~~~~~~-~n~~~~-~g~~t~~~EI 172 (353)
T PRK07409 98 ARAGLKAFVLIPEGKIALGKLAQAVMYGAEIIQIDG--NFDDALEIVRELAEKY-PVTLVNS-VNPYRI-EGQKTAAFEI 172 (353)
T ss_pred HHcCCCEEEEEcCCCCchhhHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHhc-CceecCC-CCchhh-hhHHHHHHHH
Confidence 99999999999997 689999999999999999995 4889999999988876 4677765 599998 5999999999
Q ss_pred HHhhCCCCCEEEEecCCcccHHHHHHHHHhhCC------CcEEEEEecCCCccccCCCC---cccccccCCCCCCcccc-
Q 024022 168 WNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNP------NIKVYGIEPSESAVLNGGQP---GKHLIQGIGAGVIPPVL- 237 (274)
Q Consensus 168 ~~q~~~~~d~iv~~vG~Gg~~~Gi~~~~k~~~~------~~~vigve~~~~~~~~~~~~---~~~~~~gl~~~~~~~~~- 237 (274)
++|++..||+||+|+|+||+++|++.+|++..+ .+|||+|||.+++++..+++ ..+..++++.+. |..+
T Consensus 173 ~~q~~~~~d~iv~~vG~GG~~~Gi~~g~~~~~~~~~~~~~~kvigVep~g~~~~~~g~~~~~~~ti~~~l~~~~-~~~~~ 251 (353)
T PRK07409 173 VDALGDAPDYHCIPVGNAGNITAYWKGYKEYHQDGKSTKLPRMMGFQAAGAAPIVRGEPVKNPETIATAIRIGN-PASWD 251 (353)
T ss_pred HHHhCCCCCEEEEeCCChHHHHHHHHHHHHHHHcCCccCCCeEEEEecCCCChHhhCCcCCCCcceeeeeecCC-CCCHH
Confidence 999976799999999999999999999998743 48999999999877765543 233445665442 2222
Q ss_pred -----cccccCeEEEeCHHHHHHHHHHHHHHcCCEecccCC
Q 024022 238 -----DVAMLDEVITVSSEEAIETSKLLALKEGLLQRQLLY 273 (274)
Q Consensus 238 -----~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~g~s~~ 273 (274)
.++..++++.|+|+|+++++++|++++|+++||||+
T Consensus 252 ~~~~~~~~~~~~~v~Vsd~e~~~a~~~l~~~egi~v~pssa 292 (353)
T PRK07409 252 KAVAARDESGGLIDAVTDEEILEAYRLLARKEGVFCEPASA 292 (353)
T ss_pred HHHHHHHHhCCEEEEECHHHHHHHHHHHHHhCCceeCchHH
Confidence 234556899999999999999999999999999985
No 48
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=100.00 E-value=3.5e-53 Score=380.83 Aligned_cols=255 Identities=24% Similarity=0.256 Sum_probs=222.7
Q ss_pred HHHhcccCCCcceecccccCCCC-ceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHH
Q 024022 9 KDVTELIGHTPMVYLNNVVDGCV-ARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFI 87 (274)
Q Consensus 9 ~~i~~~~~~TPl~~~~~l~~~~g-~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~ 87 (274)
+++.+.+++|||+++++|+...| .+||+|+|++|||||||||++.+++.++.++|. ++||++|+||||+|+|++
T Consensus 14 ~~~~l~~g~TPl~~~~~l~~~~g~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~-----~~vv~~SsGN~g~alA~~ 88 (324)
T cd01563 14 DIVSLGEGNTPLVRAPRLGERLGGKNLYVKDEGLNPTGSFKDRGMTVAVSKAKELGV-----KAVACASTGNTSASLAAY 88 (324)
T ss_pred CcccCCCCCCceeechhhHhhcCCCceEEEecCCCCcccHHHhhHHHHHHHHHHcCC-----CEEEEeCCCHHHHHHHHH
Confidence 56889999999999999988766 799999999999999999999999999999874 459999999999999999
Q ss_pred HHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhchHHHH
Q 024022 88 AASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEI 167 (274)
Q Consensus 88 a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei 167 (274)
|+++|++|++|||+++++.|++.|+.+||+|+.++. +++++.+.+++++++. ++|++||+|+.++ .||.|++.||
T Consensus 89 a~~~G~~~~ivvp~~~~~~k~~~l~~~GA~Vi~~~~--~~~~~~~~a~~~~~~~--~~~~~~~~n~~~~-~g~~t~~~Ei 163 (324)
T cd01563 89 AARAGIKCVVFLPAGKALGKLAQALAYGATVLAVEG--NFDDALRLVRELAEEN--WIYLSNSLNPYRL-EGQKTIAFEI 163 (324)
T ss_pred HHHcCCceEEEEeCCCCHHHHHHHHHcCCEEEEECC--cHHHHHHHHHHHHHhc--CeeccCCCCccee-cchhhhHHHH
Confidence 999999999999999999999999999999999986 4788889999998875 7899999999999 5999999999
Q ss_pred HHhhCC-CCCEEEEecCCcccHHHHHHHHHhhC------CCcEEEEEecCCCcccc----CCCC-------cccccccCC
Q 024022 168 WNDSGG-KVDAFIAGIGTGGTVTGAGRFLKEKN------PNIKVYGIEPSESAVLN----GGQP-------GKHLIQGIG 229 (274)
Q Consensus 168 ~~q~~~-~~d~iv~~vG~Gg~~~Gi~~~~k~~~------~~~~vigve~~~~~~~~----~~~~-------~~~~~~gl~ 229 (274)
++|+++ .+|+||+|+|+||+++|++.++|..+ ++++||+|||.+++++. .+.. ..+.+++++
T Consensus 164 ~~q~~~~~~d~vv~~vGtGg~~~G~~~~~k~~~~~g~~~~~~~vigve~~~~~~~~~~~~~g~~~~~~~~~~~t~~~gl~ 243 (324)
T cd01563 164 AEQLGWEVPDYVVVPVGNGGNITAIWKGFKELKELGLIDRLPRMVGVQAEGAAPIVRAFKEGKDDIEPVENPETIATAIR 243 (324)
T ss_pred HHHcCCCCCCEEEEecCCcHHHHHHHHHHHHHHhCCccccCCeEEEEecCCCCHHHHHHHcCCCccCcCCCCCceeeeee
Confidence 999964 69999999999999999999999875 57999999999986542 2211 234556776
Q ss_pred CCCCc---c--cccccccCeEEEeCHHHHHHHHHHHHHHcCCEecccCC
Q 024022 230 AGVIP---P--VLDVAMLDEVITVSSEEAIETSKLLALKEGLLQRQLLY 273 (274)
Q Consensus 230 ~~~~~---~--~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~g~s~~ 273 (274)
.+..+ . .+..++.|+++.|+|+|+++++++|+++||+++||||+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~pssa 292 (324)
T cd01563 244 IGNPASGPKALRAVRESGGTAVAVSDEEILEAQKLLARTEGIFVEPASA 292 (324)
T ss_pred cCCCCCHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhcCCceeCchHH
Confidence 54321 1 12345678999999999999999999999999999975
No 49
>PRK06381 threonine synthase; Validated
Probab=100.00 E-value=4.1e-53 Score=379.51 Aligned_cols=253 Identities=22% Similarity=0.280 Sum_probs=215.0
Q ss_pred hcccCCCcceecccccCCCC-ceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHH
Q 024022 12 TELIGHTPMVYLNNVVDGCV-ARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAAS 90 (274)
Q Consensus 12 ~~~~~~TPl~~~~~l~~~~g-~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~ 90 (274)
...+++|||+++++|++.+| .+||+|+|++|||||||||++.+++.+++++|. ++||++|+||||+|+|++|++
T Consensus 10 ~~~~g~TPL~~~~~l~~~~G~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~-----~~lv~aSsGN~g~alA~~aa~ 84 (319)
T PRK06381 10 EKPPGGTPLLRARKLEEELGLRKIYLKFEGANPTGTQKDRIAEAHVRRAMRLGY-----SGITVGTCGNYGASIAYFARL 84 (319)
T ss_pred cccCCCCceeEhHhhHHhcCCceEEEEecCCCCccCcHHHHHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHHHHHH
Confidence 45689999999999998888 699999999999999999999999999999985 459999999999999999999
Q ss_pred cCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCC-CC-cchHhhhhchHHHHH
Q 024022 91 RGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFE-NP-ANPEIHYETTGPEIW 168 (274)
Q Consensus 91 ~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~-~~~~~g~~t~~~Ei~ 168 (274)
+|++|+||||.+++..|+++|+.+||+|+.++++ ++++.+.+++++++. ++|++++++ |+ .++ .||.|+++||+
T Consensus 85 ~G~~~~ivvp~~~~~~~~~~l~~~GA~V~~~~~~--~~~~~~~a~~~~~~~-~~~~~~~~~~n~~~~~-~G~~t~a~Ei~ 160 (319)
T PRK06381 85 YGLKAVIFIPRSYSNSRVKEMEKYGAEIIYVDGK--YEEAVERSRKFAKEN-GIYDANPGSVNSVVDI-EAYSAIAYEIY 160 (319)
T ss_pred cCCcEEEEECCCCCHHHHHHHHHcCCEEEEcCCC--HHHHHHHHHHHHHHc-CcEecCCCCCCcchHh-hhHHHHHHHHH
Confidence 9999999999999999999999999999999964 788889999988875 788888886 76 466 59999999999
Q ss_pred HhhCCCCCEEEEecCCcccHHHHHHHHHhh------CCCcEEEEEecCCCcccc----CCCCc------ccccc-cCCCC
Q 024022 169 NDSGGKVDAFIAGIGTGGTVTGAGRFLKEK------NPNIKVYGIEPSESAVLN----GGQPG------KHLIQ-GIGAG 231 (274)
Q Consensus 169 ~q~~~~~d~iv~~vG~Gg~~~Gi~~~~k~~------~~~~~vigve~~~~~~~~----~~~~~------~~~~~-gl~~~ 231 (274)
+|++..||+||+|+|+||+++|++++|++. .|+++||+|||.+++++. .+... .+..+ .++.+
T Consensus 161 ~ql~~~~D~vv~~vGtGgt~~Gl~~~~~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~ 240 (319)
T PRK06381 161 EALGDVPDAVAVPVGNGTTLAGIYHGFRRLYDRGKTSRMPRMIGVSTSGGNQIVESFKRGSSEVVDLEVDEIRETAVNEP 240 (319)
T ss_pred HHhCCCCCEEEEcCCccHHHHHHHHHHHHHHhCCCcCCCCEEEEEeeCCCCHHHHHHHcCCCcccCCCcchhhhcccCCC
Confidence 999767999999999999999999999998 799999999999886542 22111 01111 11111
Q ss_pred CC---------cccccccccCeEEEeCHHHHHHHHHHHHHHcCCEecccCC
Q 024022 232 VI---------PPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLQRQLLY 273 (274)
Q Consensus 232 ~~---------~~~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~g~s~~ 273 (274)
.. ...+..++.++++.|+|+|+++++++|+++|||++||||+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~g~~~~v~d~e~~~a~~~la~~egi~~epssa 291 (319)
T PRK06381 241 LVSYRSFDGDNALEAIYDSHGYAFGFSDDEMVKYAELLRRMEGLNALPASA 291 (319)
T ss_pred cccccCCCHHHHHHHHHHcCCEEEEECHHHHHHHHHHHHHhCCcccCchHH
Confidence 10 0112346677999999999999999999999999999975
No 50
>PRK06450 threonine synthase; Validated
Probab=100.00 E-value=1.6e-52 Score=376.59 Aligned_cols=240 Identities=24% Similarity=0.241 Sum_probs=203.4
Q ss_pred HHhcccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHH
Q 024022 10 DVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAA 89 (274)
Q Consensus 10 ~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~ 89 (274)
.+++++|+|||++.+ +||+|+|++|||||||||++.++++++.+.|. ++|+++|+||+|.|+|++|+
T Consensus 51 ~vslgeG~TPLv~~~--------~l~~K~E~~nPTGSfKDRga~~~i~~a~~~g~-----~~vv~aSsGN~g~slA~~aa 117 (338)
T PRK06450 51 FISLGEGRTPLIKKG--------NIWFKLDFLNPTGSYKDRGSVTLISYLAEKGI-----KQISEDSSGNAGASIAAYGA 117 (338)
T ss_pred CCCCCCCCCCceecC--------CEEEEecCCCCcCCCHHHHHHHHHHHHHHcCC-----CEEEEECCcHHHHHHHHHHH
Confidence 478899999999964 59999999999999999999999999999874 45999999999999999999
Q ss_pred HcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhchHHHHHH
Q 024022 90 SRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWN 169 (274)
Q Consensus 90 ~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ 169 (274)
++|++|+||||+++++.|+.+|+.+||+|+.++++ ++++.+. +++. +.+|++++.||.+++ ||+|+++||++
T Consensus 118 ~~G~~~~i~vP~~~~~~k~~~i~~~GA~vi~v~~~--~~~~~~~----a~~~-g~~~~~~~~np~~ie-G~kTia~EI~e 189 (338)
T PRK06450 118 AAGIEVKIFVPETASGGKLKQIESYGAEVVRVRGS--REDVAKA----AENS-GYYYASHVLQPQFRD-GIRTLAYEIAK 189 (338)
T ss_pred HcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCC--HHHHHHH----HHhc-CeEeccCCCCccHHH-HHHHHHHHHHH
Confidence 99999999999999999999999999999999864 6554433 4444 778999999999995 99999999999
Q ss_pred hhCC-CCCEEEEecCCcccHHHHHHHHHhhCC------CcEEEEEecCCCcccc----CCCC-----cccccccCCCCCC
Q 024022 170 DSGG-KVDAFIAGIGTGGTVTGAGRFLKEKNP------NIKVYGIEPSESAVLN----GGQP-----GKHLIQGIGAGVI 233 (274)
Q Consensus 170 q~~~-~~d~iv~~vG~Gg~~~Gi~~~~k~~~~------~~~vigve~~~~~~~~----~~~~-----~~~~~~gl~~~~~ 233 (274)
|+++ .||+||+|+|+||+++|++++|+++.+ .+|||+|||++++++. +... ..+.+++|..+.
T Consensus 190 ql~~~~pD~vvvpvG~Ggll~Gi~~g~~el~~~G~i~~~prii~Vq~~g~~p~~~a~~~~~~~~~~~~~tia~~l~~~~- 268 (338)
T PRK06450 190 DLDWKIPNYVFIPVSAGTLLLGVYSGFKHLLDSGVISEMPKIVAVQTEQVSPLCAKFKGISYTPPDKVTSIADALVSTR- 268 (338)
T ss_pred HcCCCCCCEEEEECCchHHHHHHHHHHHHHHhcCCccCCCeEEEEeeCCCCHHHHHhcCCCCCCCCCCCcceeeeecCC-
Confidence 9974 599999999999999999999999864 3899999999987654 2211 234455665432
Q ss_pred cccc------cccccCeEEEeCHHHHHHHHHHHHHHcCCEecccCC
Q 024022 234 PPVL------DVAMLDEVITVSSEEAIETSKLLALKEGLLQRQLLY 273 (274)
Q Consensus 234 ~~~~------~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~g~s~~ 273 (274)
|... .++. +..+.|+|+|+++++++|++ +|+++||||+
T Consensus 269 p~~~~~~~~~i~~~-g~~v~V~d~ei~~a~~~La~-~Gi~vepssa 312 (338)
T PRK06450 269 PFLLDYMVKALSEY-GECIVVSDNEIVEAWKELAK-KGLLVEYSSA 312 (338)
T ss_pred CCCHHHHHHHHHhc-CcEEEECHHHHHHHHHHHHH-cCCEEChhHH
Confidence 2221 2344 79999999999999999987 6999999985
No 51
>PRK08329 threonine synthase; Validated
Probab=100.00 E-value=2.8e-52 Score=377.30 Aligned_cols=245 Identities=23% Similarity=0.243 Sum_probs=214.7
Q ss_pred HhcccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHH
Q 024022 11 VTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAAS 90 (274)
Q Consensus 11 i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~ 90 (274)
++++.|.|||+++. .+||+|+|++|||||||||++.+++.++.+.|. .+||++|+||||+|+|++|++
T Consensus 58 ~sl~eg~Tpl~~~~-------~~l~~K~E~~nPtGSfKdRga~~~i~~a~~~g~-----~~vv~aSsGN~g~alA~~aa~ 125 (347)
T PRK08329 58 PHLTPPITPTVKRS-------IKVYFKLDYLQPTGSFKDRGTYVTVAKLKEEGI-----NEVVIDSSGNAALSLALYSLS 125 (347)
T ss_pred CcCCCCCCccccCC-------CeEEEEeCCCCCCcCCHHHHHHHHHHHHHHcCC-----CEEEEECCCcHHHHHHHHHHH
Confidence 57788999999973 489999999999999999999999999999985 459999999999999999999
Q ss_pred cCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhchHHHHHHh
Q 024022 91 RGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWND 170 (274)
Q Consensus 91 ~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q 170 (274)
+|++|+||||+++++.|+.+++.+||+|+.++++ ++++.+.+++++++. +.+|++++.||.+++ ||+|+++||++|
T Consensus 126 ~G~~~~v~vp~~~~~~k~~~~~~~GA~v~~v~~~--~~~~~~~a~~l~~~~-~~~~~~~~~np~~~e-G~~t~~~Ei~eq 201 (347)
T PRK08329 126 EGIKVHVFVSYNASKEKISLLSRLGAELHFVEGD--RMEVHEEAVKFSKRN-NIPYVSHWLNPYFLE-GTKTIAYEIYEQ 201 (347)
T ss_pred cCCcEEEEECCCChHHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHhc-CCeeccCCCCchhhc-cchhHHHHHHHH
Confidence 9999999999999999999999999999999864 677788888888775 778899999999994 999999999999
Q ss_pred hCCCCCEEEEecCCcccHHHHHHHHHhhC------CCcEEEEEecCCCccccC-CCCcccccccCCCCCCcc-----ccc
Q 024022 171 SGGKVDAFIAGIGTGGTVTGAGRFLKEKN------PNIKVYGIEPSESAVLNG-GQPGKHLIQGIGAGVIPP-----VLD 238 (274)
Q Consensus 171 ~~~~~d~iv~~vG~Gg~~~Gi~~~~k~~~------~~~~vigve~~~~~~~~~-~~~~~~~~~gl~~~~~~~-----~~~ 238 (274)
++ .||+||+|+|+||+++|++++|+++. +.+|||+|||+++.++.. .....+.+++++.+..+. .+.
T Consensus 202 l~-~pD~vvvpvG~Gg~l~Gi~~g~kel~~~g~i~~~p~ii~Vq~~g~~~~~~~~~~~~t~a~gi~i~~~~~~~~~~~~l 280 (347)
T PRK08329 202 IG-VPDYAFVPVGSGTLFLGIWKGFKELHEMGEISKMPKLVAVQAEGYESLCKRSKSENKLADGIAIPEPPRKEEMLRAL 280 (347)
T ss_pred cC-CCCEEEEeCCcHHHHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCchHHhccCCCCceeeeEEeCCCCCHHHHHHHH
Confidence 96 79999999999999999999999874 568999999999876653 233456778887764332 223
Q ss_pred ccccCeEEEeCHHHHHHHHHHHHHHcCCEecccCC
Q 024022 239 VAMLDEVITVSSEEAIETSKLLALKEGLLQRQLLY 273 (274)
Q Consensus 239 ~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~g~s~~ 273 (274)
++..+.++.|+|+|+++++++|++ +||++||||+
T Consensus 281 ~~~~g~~~~V~d~e~~~a~~~l~~-~Gi~vepssa 314 (347)
T PRK08329 281 EESNGFCISVGEEETRAALHWLRR-MGFLVEPTSA 314 (347)
T ss_pred HHhCCEEEEECHHHHHHHHHHHHh-cCceECccHH
Confidence 456778999999999999999986 7999999975
No 52
>PRK06260 threonine synthase; Validated
Probab=100.00 E-value=1.6e-52 Score=385.33 Aligned_cols=254 Identities=25% Similarity=0.252 Sum_probs=219.2
Q ss_pred HHHhcccCCCcceecccccCCCCc-eEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHH
Q 024022 9 KDVTELIGHTPMVYLNNVVDGCVA-RIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFI 87 (274)
Q Consensus 9 ~~i~~~~~~TPl~~~~~l~~~~g~-~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~ 87 (274)
+.+++.+++|||++++++++.+|. +||+|+|++|||||||||++.+++.++++.|. ++||++|+||||+|+|++
T Consensus 59 ~~v~l~~G~TPLv~~~~l~~~~g~~~l~~K~E~~nPTGSfKdRga~~~v~~a~~~g~-----~~vv~aSsGN~g~alA~~ 133 (397)
T PRK06260 59 KIVSLNEGGTPLYRCPNLEKELGVKELYVKHEGANPTGSFKDRGMTVGVTKALELGV-----KTVACASTGNTSASLAAY 133 (397)
T ss_pred CcccCCCCCCCeEEchhhHHHhCCCcEEEEeCCCCCCcCcHHHHHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHHH
Confidence 357889999999999999888886 99999999999999999999999999999885 459999999999999999
Q ss_pred HHHcCCeEEEEeCCC-CCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhchHHH
Q 024022 88 AASRGYKLIIIMPST-YSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPE 166 (274)
Q Consensus 88 a~~~g~~~~i~~p~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~E 166 (274)
|+++|++|+||||++ ++..|+.+++.+||+|+.+++ +++++.+.+++++++. ++|+++++ ||.++ .||+|+++|
T Consensus 134 aa~~G~~~~i~vP~~~~~~~k~~~~~~~GA~vi~v~~--~~~~~~~~a~~~~~~~-g~y~~~~~-np~~~-~G~~t~a~E 208 (397)
T PRK06260 134 AARAGLKCYVLLPAGKVALGKLAQALLHGAKVLEVDG--NFDDALDMVVELAKEG-KIYLLNSI-NPFRL-EGQKTIGFE 208 (397)
T ss_pred HHHcCCcEEEEEeCCCccHHHHHHHHhcCCEEEEECC--cHHHHHHHHHHHHhhC-CEEeecCC-Cchhh-cchhhHHHH
Confidence 999999999999996 799999999999999999986 4888999999988876 78888887 89998 599999999
Q ss_pred HHHhhCC-CCCEEEEecCCcccHHHHHHHHHhhCC------CcEEEEEecCCCcccc----CCCC-------cccccccC
Q 024022 167 IWNDSGG-KVDAFIAGIGTGGTVTGAGRFLKEKNP------NIKVYGIEPSESAVLN----GGQP-------GKHLIQGI 228 (274)
Q Consensus 167 i~~q~~~-~~d~iv~~vG~Gg~~~Gi~~~~k~~~~------~~~vigve~~~~~~~~----~~~~-------~~~~~~gl 228 (274)
|++|+++ .||+||+|+|+||+++|++++|+++.+ .+|||+|||+++.++. .+.. ..+.++++
T Consensus 209 i~eQl~~~~pd~vvvpvG~Gg~~~Gi~~~~~~l~~~G~i~~~prii~Vq~~g~~~~~~a~~~g~~~~~~~~~~~tia~~i 288 (397)
T PRK06260 209 IADQLGWEVPDRVVLPVGNAGNISAIWKGFKELVELGIIDKLPKMTGIQAEGAAPIVEAIKKGKDEIEPVENPETVATAI 288 (397)
T ss_pred HHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHhcCCcCCCCeEEEEecCCCcHHHHHHHcCCCcccccCCCCceeeee
Confidence 9999976 699999999999999999999998763 4899999999997653 2221 12344454
Q ss_pred CCCCCccc------ccccccCeEEEeCHHHHHHHHHHHHHHcCCEecccCC
Q 024022 229 GAGVIPPV------LDVAMLDEVITVSSEEAIETSKLLALKEGLLQRQLLY 273 (274)
Q Consensus 229 ~~~~~~~~------~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~g~s~~ 273 (274)
..+. |.. ..++..+.++.|+|+|+++++++|++++|+++||||+
T Consensus 289 ~i~~-p~~~~~~~~~l~~~~g~~v~V~d~e~~~a~~~la~~eGi~vepssa 338 (397)
T PRK06260 289 RIGN-PVNAPKALRAIRESGGTAEAVSDEEILDAQKLLARKEGIGVEPASA 338 (397)
T ss_pred EeCC-CCCHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHhCCCeeCchHH
Confidence 4322 211 2334567899999999999999999999999999985
No 53
>KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism]
Probab=100.00 E-value=9.3e-53 Score=347.87 Aligned_cols=263 Identities=22% Similarity=0.332 Sum_probs=236.0
Q ss_pred cchhhhHHHHhcccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHH
Q 024022 2 EDKCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTG 81 (274)
Q Consensus 2 ~~~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g 81 (274)
++...+++|+.+.+..||++.++.+.+..|.+||+|+|.+|.+|+||.|||.+.+..+..+.. .+.+++.||||||
T Consensus 10 ~dv~~A~~rik~~ihkTpVlTS~~ln~~~g~~vfFKcE~fQKtGaFKfRGAlNav~~l~~ek~----~kgvithSSGNHa 85 (323)
T KOG1251|consen 10 EDVRAAHQRIKPFIHKTPVLTSENLNEKVGRHVFFKCENFQKTGAFKFRGALNAVSSLKAEKR----AKGVITHSSGNHA 85 (323)
T ss_pred HHHHHHHHHHHhhhccCceechhhHHHHhhhheEeehhhhhhccceehhhhHHHHHHhhHhhh----cCceEeecCCcHH
Confidence 456788999999999999999999999999999999999999999999999999998874443 4569999999999
Q ss_pred HHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhh
Q 024022 82 IGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYE 161 (274)
Q Consensus 82 ~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~ 161 (274)
.|+|++|+..|+|++|+||.++|..|+..++.|||+|+++++. .+++...++++.++. +.+.++||++|..+ +|++
T Consensus 86 qAlalaAk~~giPa~IVvP~~AP~~Kv~a~~~Yga~ii~~e~~--~~sRE~va~~ltee~-g~~~i~Py~~p~vI-aGqg 161 (323)
T KOG1251|consen 86 QALALAAKILGIPATIVVPKDAPICKVAATRGYGANIIFCEPT--VESRESVAKDLTEET-GYYLIHPYNHPSVI-AGQG 161 (323)
T ss_pred HHHHHHHHhcCCCeEEEecCCChHHHHHHHHhcCceEEEecCc--cchHHHHHHHHHHhc-CcEEeCCCCCccee-eccc
Confidence 9999999999999999999999999999999999999999975 568889999999987 88999999999998 7999
Q ss_pred chHHHHHHhhCCCCCEEEEecCCcccHHHHHHHHHhhCCCcEEEEEecCCCcc----ccCCCC-----cccccccCCC--
Q 024022 162 TTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAV----LNGGQP-----GKHLIQGIGA-- 230 (274)
Q Consensus 162 t~~~Ei~~q~~~~~d~iv~~vG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~----~~~~~~-----~~~~~~gl~~-- 230 (274)
|++.|++||++ .+|.+|+|+|+||+++|++.+.+.+.|+++|++|||++... +..|.. ..++++|...
T Consensus 162 TiA~ElleqVg-~iDalfvpvgGGGllSgvAlaa~~l~P~i~vy~veP~~a~d~~qsf~~g~I~~l~tp~TIADG~r~~~ 240 (323)
T KOG1251|consen 162 TIALELLEQVG-EIDALFVPVGGGGLLSGVALAAKSLKPSIEVYAVEPEAADDGQQSFLKGKIVHLDTPKTIADGVRTSH 240 (323)
T ss_pred hHHHHHHHhhC-ccceEEEeecCcchhhHHHHHHhccCCCcEEEEecCcccchHHHHHhcCCeEecCCchhhhhhhhhcc
Confidence 99999999995 89999999999999999999999999999999999987653 222322 3456677654
Q ss_pred -CCCcccccccccCeEEEeCHHHHHHHHHHHHHHcCCEecccCC
Q 024022 231 -GVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLQRQLLY 273 (274)
Q Consensus 231 -~~~~~~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~g~s~~ 273 (274)
+..+|.+.++++|+++.|+|+|+.++++.++.+-.+.++|+.+
T Consensus 241 lG~~t~pIir~~vddi~Tv~e~Ei~~~lk~~~ermK~~vEPTa~ 284 (323)
T KOG1251|consen 241 LGPLTWPIIRDLVDDILTVSEDEIKEALKLIWERMKVVVEPTAA 284 (323)
T ss_pred ccccchHHHHHHhhhheeecHHHHHHHHHHHHHHHheeeccchh
Confidence 3457788899999999999999999999999999999999864
No 54
>PLN02569 threonine synthase
Probab=100.00 E-value=5.8e-52 Score=386.82 Aligned_cols=257 Identities=18% Similarity=0.141 Sum_probs=219.8
Q ss_pred HHhcccCCCcceecccccCC-CC-ceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHH
Q 024022 10 DVTELIGHTPMVYLNNVVDG-CV-ARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFI 87 (274)
Q Consensus 10 ~i~~~~~~TPl~~~~~l~~~-~g-~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~ 87 (274)
.+++++|+|||+++++|++. +| .+||+|+|++|||||||||++.+++..+.+.|........|+++|+||||.|+|++
T Consensus 126 ~vsl~eG~TPLv~~~~l~~~~~G~~~l~~K~E~~nPTGSFKDRga~~~vs~a~~~g~~~~~~~~Vv~ASSGN~GaAlAay 205 (484)
T PLN02569 126 IVSLFEGNSNLFWAERLGKEFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMAKPVVGVGCASTGDTSAALSAY 205 (484)
T ss_pred ceecCCCCCceeEhhhhhHhhcCCccEEEEECCCCCCcCHHHHHHHHHHHHHHHhhhccCCccEEEEeCCcHHHHHHHHH
Confidence 37888999999999999887 77 48999999999999999999999999998876522112459999999999999999
Q ss_pred HHHcCCeEEEEeCCC-CCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhchHHH
Q 024022 88 AASRGYKLIIIMPST-YSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPE 166 (274)
Q Consensus 88 a~~~g~~~~i~~p~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~E 166 (274)
|+++|++|+||||++ .+..|+.+|+.+||+|+.+++ +|+++++.+++++++. ++|+++++ ||.+++ ||+|+++|
T Consensus 206 aa~~Gl~~~I~vP~~~~~~~k~~qi~a~GA~Vi~v~g--~~d~a~~~a~e~~~~~-~~~~~n~~-Np~~ie-G~kT~a~E 280 (484)
T PLN02569 206 CAAAGIPSIVFLPADKISIAQLVQPIANGALVLSIDT--DFDGCMRLIREVTAEL-PIYLANSL-NSLRLE-GQKTAAIE 280 (484)
T ss_pred HHhcCCeEEEEEcCCCCCHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHHc-CCEecCCC-CcchhH-hHHHHHHH
Confidence 999999999999996 888999999999999999996 4899999999988876 68899988 999995 99999999
Q ss_pred HHHhhCCC-CCEEEEecCCcccHHHHHHHHHhhC------CCcEEEEEecCCCcccc----CCC-------CcccccccC
Q 024022 167 IWNDSGGK-VDAFIAGIGTGGTVTGAGRFLKEKN------PNIKVYGIEPSESAVLN----GGQ-------PGKHLIQGI 228 (274)
Q Consensus 167 i~~q~~~~-~d~iv~~vG~Gg~~~Gi~~~~k~~~------~~~~vigve~~~~~~~~----~~~-------~~~~~~~gl 228 (274)
|++|++++ ||+||+|+|+||+++|++++|+++. +.+|||+||+++|+++. .+. ..++.+++|
T Consensus 281 I~eQl~~~~pD~VvvPvG~Gg~l~Gi~kgfkel~~~G~i~~~Priv~Vqa~g~~pl~~a~~~G~~~~~~~~~~~T~A~gi 360 (484)
T PLN02569 281 ILQQFDWEVPDWVIVPGGNLGNIYAFYKGFKMCKELGLVDRLPRLVCAQAANANPLYRAYKSGWEEFKPVKANPTFASAI 360 (484)
T ss_pred HHHHcCCCCCCEEEEeCCchHHHHHHHHHHHHHHHcCCCCCCCeEEEEeeCCCcHHHHHHHcCCCccccCCCCCccchhh
Confidence 99999865 9999999999999999999999874 45899999999997654 222 134566777
Q ss_pred CCCCCccccc------ccccCeEEEeCHHHHHHHHHHHHHHcCCEecccCC
Q 024022 229 GAGVIPPVLD------VAMLDEVITVSSEEAIETSKLLALKEGLLQRQLLY 273 (274)
Q Consensus 229 ~~~~~~~~~~------~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~g~s~~ 273 (274)
+.+ .|.++. ++.-+.++.|+|+|+++++++ ++++||++||||+
T Consensus 361 ~i~-~P~~~~~~l~al~~s~g~~v~VsDeEi~~a~~~-a~~~Gi~vepssA 409 (484)
T PLN02569 361 QIG-DPVSIDRAVYALKESNGIVEEATEEELMDAQAE-ADKTGMFLCPHTG 409 (484)
T ss_pred ccC-CCccHHHHHHHHHHhCCEEEEECHHHHHHHHHH-HHHCCcEECchHH
Confidence 765 343322 122345799999999999999 8999999999985
No 55
>PRK08206 diaminopropionate ammonia-lyase; Provisional
Probab=100.00 E-value=3.7e-52 Score=382.17 Aligned_cols=265 Identities=20% Similarity=0.202 Sum_probs=223.1
Q ss_pred hhhHHHH--hcccCCCcceecccccCCCC-ceEEEEeCCC-CCCCchhhHHHHHHHHHHHH--cCCC-------------
Q 024022 5 CEIKKDV--TELIGHTPMVYLNNVVDGCV-ARIAAKLEMM-QPCSSVKDRIAYSMIKDAED--KGLI------------- 65 (274)
Q Consensus 5 ~~~~~~i--~~~~~~TPl~~~~~l~~~~g-~~l~~K~E~~-nptGS~K~R~a~~~~~~a~~--~g~~------------- 65 (274)
..+..++ ...+++|||+++++|++.+| .+||+|+|++ |||||||+|++.+.+.++.. .+.-
T Consensus 30 ~~a~~~~~~~~~~~~TPL~~~~~l~~~~G~~~v~~K~E~~q~ptgSFK~RG~~~~i~~~~~~~~~~~~~~~~~~~l~~~~ 109 (399)
T PRK08206 30 KKARAFHQSFPGYAPTPLVALPDLAAELGVGSILVKDESYRFGLNAFKALGGAYAVARLLAEKLGLDISELSFEELTSGE 109 (399)
T ss_pred HHHHHHHhcCCCCCCCCCcchHHHHHHhCCCcEEEecccCcCCCCChHHhhHHHHHHHHHHHHhCCCcccCCHHHhhhhH
Confidence 4566778 56899999999999999888 6999999997 59999999999999988763 2210
Q ss_pred ----CCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhC
Q 024022 66 ----TPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRT 141 (274)
Q Consensus 66 ----~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~ 141 (274)
.++ .+|+++|+||||+|+|++|+++|++|+||||+++++.|+..|+.+||+|+.++. +++++++.+.+++++.
T Consensus 110 ~~~~~~~-~~vv~aSsGN~g~alA~~a~~~G~~~~Ivvp~~~~~~k~~~i~~~GA~Vi~v~~--~~~~~~~~a~~~~~~~ 186 (399)
T PRK08206 110 VREKLGD-ITFATATDGNHGRGVAWAAQQLGQKAVIYMPKGSSEERVDAIRALGAECIITDG--NYDDSVRLAAQEAQEN 186 (399)
T ss_pred HHHhccC-CEEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHHHc
Confidence 012 248999999999999999999999999999999999999999999999999995 4889999999988876
Q ss_pred CCeEeeC-----CCCC-CcchHhhhhchHHHHHHhhCC---CCCEEEEecCCcccHHHHHHHHHhhC--CCcEEEEEecC
Q 024022 142 PNGYILG-----QFEN-PANPEIHYETTGPEIWNDSGG---KVDAFIAGIGTGGTVTGAGRFLKEKN--PNIKVYGIEPS 210 (274)
Q Consensus 142 ~~~~~~~-----~~~~-~~~~~~g~~t~~~Ei~~q~~~---~~d~iv~~vG~Gg~~~Gi~~~~k~~~--~~~~vigve~~ 210 (274)
+++|++ +|+| +.++..||.|+++||++|+++ .||+||+|+|+||+++|++.++++++ +.+|||+|||+
T Consensus 187 -g~~~v~~~~~~~~~~~~~~~~~G~~t~a~EI~eQl~~~~~~pD~vvvpvG~GG~~aGi~~~~k~~~~~~~~kii~Vep~ 265 (399)
T PRK08206 187 -GWVVVQDTAWEGYEEIPTWIMQGYGTMADEAVEQLKEMGVPPTHVFLQAGVGSLAGAVLGYFAEVYGEQRPHFVVVEPD 265 (399)
T ss_pred -CCEEecCccccCcccccHHHHHHhHHHHHHHHHHHHhcCCCCCEEEEcCCccHHHHHHHHHHHHHcCCCCCEEEEECCC
Confidence 788886 6765 555557999999999999975 59999999999999999999999984 47999999999
Q ss_pred CCcccc----CCCC------cccccccCCCCC---CcccccccccCeEEEeCHHHHHHHHHHHHH----HcCCEecccCC
Q 024022 211 ESAVLN----GGQP------GKHLIQGIGAGV---IPPVLDVAMLDEVITVSSEEAIETSKLLAL----KEGLLQRQLLY 273 (274)
Q Consensus 211 ~~~~~~----~~~~------~~~~~~gl~~~~---~~~~~~~~~~d~~v~v~d~e~~~a~~~l~~----~eGi~~g~s~~ 273 (274)
+++++. .+++ ..+.++|+..+. .++.+.++.+|+++.|+|+|+.+++++|++ ++|+++||||+
T Consensus 266 gs~~l~~s~~~g~~~~~~~~~~tia~gl~~~~~~~~~~~~~~~~~d~~v~VsD~ei~~a~r~La~~~~~~~gi~vepsgA 345 (399)
T PRK08206 266 QADCLYQSAVDGKPVAVTGDMDTIMAGLACGEPNPLAWEILRNCADAFISCPDEVAALGMRILANPLGGDPPIVSGESGA 345 (399)
T ss_pred CCchHHHHHHcCCcEEeCCCCCceeccCCCCCcCHHHHHHHHHhCCEEEEECHHHHHHHHHHHhcccCCCCCeeecchHH
Confidence 998653 2322 134567776543 234455688999999999999999999996 78999999985
No 56
>PRK05638 threonine synthase; Validated
Probab=100.00 E-value=8.1e-51 Score=378.64 Aligned_cols=251 Identities=18% Similarity=0.189 Sum_probs=211.8
Q ss_pred HHhcccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHH
Q 024022 10 DVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAA 89 (274)
Q Consensus 10 ~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~ 89 (274)
.+++++++|||++++ +++.+|.+||+|+|++|||||||||++.+++.+|++.|. ++|+++|+||||+|+|++|+
T Consensus 59 ~v~l~~G~TPLv~~~-~~~~~g~~l~~K~E~~nPtGSfKdR~a~~~i~~a~~~g~-----~~vv~aSsGN~g~alA~~aa 132 (442)
T PRK05638 59 IISLGEGGTPLIRAR-ISEKLGENVYIKDETRNPTGSFRDRLATVAVSYGLPYAA-----NGFIVASDGNAAASVAAYSA 132 (442)
T ss_pred ccccCCCCCcEEccc-chHHhCCeEEEEeCCCCCCCChHHHHHHHHHHHHHHcCC-----CEEEEeCCChHHHHHHHHHH
Confidence 367889999999994 666678899999999999999999999999999998874 45999999999999999999
Q ss_pred HcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhchHHHHHH
Q 024022 90 SRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWN 169 (274)
Q Consensus 90 ~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ 169 (274)
++|++|+||||++++..|+.+++.+||+|+.+++ +++++.+.+++++++. ++|++++++||.+++ ||+|+++||++
T Consensus 133 ~~G~~~~i~vp~~~~~~k~~~~~~~GA~vi~v~~--~~~~~~~~a~~~~~~~-~~~~~~~~~np~~~e-G~~t~a~Ei~e 208 (442)
T PRK05638 133 RAGKEAFVVVPRKVDKGKLIQMIAFGAKIIRYGE--SVDEAIEYAEELARLN-GLYNVTPEYNIIGLE-GQKTIAFELWE 208 (442)
T ss_pred HcCCCEEEEEeCCCCHHHHHHHHhcCcEEEEECC--CHHHHHHHHHHHHHhC-CeEecCCCCChhHhh-hHHHHHHHHHH
Confidence 9999999999999999999999999999999985 4889999999988775 899999999999995 99999999999
Q ss_pred hhCCCCCEEEEecCCcccHHHHHHHHHhhCC------CcEEEEEecCCCcccc----CCCC--cccccccCCCCCCc--c
Q 024022 170 DSGGKVDAFIAGIGTGGTVTGAGRFLKEKNP------NIKVYGIEPSESAVLN----GGQP--GKHLIQGIGAGVIP--P 235 (274)
Q Consensus 170 q~~~~~d~iv~~vG~Gg~~~Gi~~~~k~~~~------~~~vigve~~~~~~~~----~~~~--~~~~~~gl~~~~~~--~ 235 (274)
|++ ||+||+|+|+||+++|++.+|+++.+ .+|||+|||++++++. .+.. ..+...++..+... .
T Consensus 209 q~~--pD~vv~pvG~Gg~~~Gi~~gfkel~~~g~i~~~prii~Vq~~~~~p~~~~~~~~~~~~~~t~a~gl~~~~p~~~~ 286 (442)
T PRK05638 209 EIN--PTHVIVPTGSGSYLYSIYKGFKELLEIGVIEEIPKLIAVQTERCNPIASEILGNKTKCNETKALGLYVKNPVMKE 286 (442)
T ss_pred HHC--cCEEEEeCCchHHHHHHHHHHHHHHhCCcccCCCeEEEEecCCCCHHHHHHhcCCCCCCCceeeeEeeCCCCCHH
Confidence 995 99999999999999999999999875 3799999999987653 2221 23344555433211 1
Q ss_pred ---cccccccCeEEEeCHHHHHHHHHHHHHHcCCEecccCC
Q 024022 236 ---VLDVAMLDEVITVSSEEAIETSKLLALKEGLLQRQLLY 273 (274)
Q Consensus 236 ---~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~g~s~~ 273 (274)
...++.-+.++.|+|+++.++.+.|++ +||++||||+
T Consensus 287 ~~~~~i~~~~g~~~~v~d~~i~~a~~~l~~-eGi~~epssa 326 (442)
T PRK05638 287 YVSEAIKESGGTAVVVNEEEIMAGEKLLAK-EGIFAELSSA 326 (442)
T ss_pred HHHHHHHHhCCEEEEECHHHHHHHHHHHHh-cCceecchHH
Confidence 112344567888898888887776654 7999999985
No 57
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=100.00 E-value=4.9e-50 Score=346.80 Aligned_cols=217 Identities=45% Similarity=0.622 Sum_probs=203.7
Q ss_pred CcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEE
Q 024022 18 TPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLII 97 (274)
Q Consensus 18 TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i 97 (274)
|||++++++++..+.+||+|+|++|||||||||++.+++..+.++|.+ ++. .||++|+||+|.|+|++|+++|++|++
T Consensus 1 TPl~~~~~l~~~~~~~l~~K~e~~~ptgS~K~R~a~~~l~~a~~~g~~-~~~-~vv~~ssGN~g~alA~~a~~~g~~~~v 78 (244)
T cd00640 1 TPLVRLKRLSKLGGANIYLKLEFLNPTGSFKDRGALNLILLAEEEGKL-PKG-VIIESTGGNTGIALAAAAARLGLKCTI 78 (244)
T ss_pred CCeeEccccccccCCEEEEEecccCCcCCcHHHHHHHHHHHHHHcCCC-CCC-EEEEeCCcHHHHHHHHHHHHcCCCEEE
Confidence 899999999887778999999999999999999999999999999865 444 499999999999999999999999999
Q ss_pred EeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhchHHHHHHhhCC-CCC
Q 024022 98 IMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGG-KVD 176 (274)
Q Consensus 98 ~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~-~~d 176 (274)
|+|.+.++.|+++|+.+|++|+.++++ ++++.+.+++++++.++++|+++|+|+.+++ ||.++++||++|+++ .||
T Consensus 79 ~~p~~~~~~~~~~~~~~Ga~v~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~-g~~~~~~Ei~~q~~~~~~d 155 (244)
T cd00640 79 VMPEGASPEKVAQMRALGAEVVLVPGD--FDDAIALAKELAEEDPGAYYVNQFDNPANIA-GQGTIGLEILEQLGGQKPD 155 (244)
T ss_pred EECCCCCHHHHHHHHHCCCEEEEECCC--HHHHHHHHHHHHHhCCCCEecCCCCCHHHHH-HHHHHHHHHHHHcCCCCCC
Confidence 999999999999999999999999965 7889999999998855899999999999995 899999999999976 599
Q ss_pred EEEEecCCcccHHHHHHHHHhhCCCcEEEEEecCCCccccCCCCcccccccCCCCCCcccccccccCeEEEeCHHHHHHH
Q 024022 177 AFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVITVSSEEAIET 256 (274)
Q Consensus 177 ~iv~~vG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~v~v~d~e~~~a 256 (274)
+||+|+|+||+++|++.++++.+|.+|||+||| +++.|+|+|++++
T Consensus 156 ~ivvp~GtGg~~~G~~~~~~~~~~~~~ii~v~~----------------------------------~~~~v~d~~~~~a 201 (244)
T cd00640 156 AVVVPVGGGGNIAGIARALKELLPNVKVIGVEP----------------------------------EVVTVSDEEALEA 201 (244)
T ss_pred EEEEecCccHHHHHHHHHHHHhCCCCEEEEEee----------------------------------eEEEECHHHHHHH
Confidence 999999999999999999999999999999997 7899999999999
Q ss_pred HHHHHHHcCCEecccCC
Q 024022 257 SKLLALKEGLLQRQLLY 273 (274)
Q Consensus 257 ~~~l~~~eGi~~g~s~~ 273 (274)
+++|++++|+++||||+
T Consensus 202 ~~~l~~~~gi~~~pssa 218 (244)
T cd00640 202 IRLLAREEGILVEPSSA 218 (244)
T ss_pred HHHHHHHcCceECHhHH
Confidence 99999999999999974
No 58
>TIGR00260 thrC threonine synthase. Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.
Probab=100.00 E-value=1.1e-49 Score=358.62 Aligned_cols=254 Identities=24% Similarity=0.206 Sum_probs=214.6
Q ss_pred HHHhcccCCCcceecccccCCCCc-eEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHH
Q 024022 9 KDVTELIGHTPMVYLNNVVDGCVA-RIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFI 87 (274)
Q Consensus 9 ~~i~~~~~~TPl~~~~~l~~~~g~-~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~ 87 (274)
+++...+++|||++++++...+|. +||+|+|++|||||||||++.+++.++.+.|. .+||++|+||||+|+|++
T Consensus 15 ~~~~l~~g~TPl~~~~~l~~~~g~~~i~~K~E~~nptGSfKdR~a~~~l~~a~~~g~-----~~vv~aSsGN~g~a~A~~ 89 (328)
T TIGR00260 15 DLVDLGEGVTPLFRSPALVANVGIKNLYVLELFHNPTLSFKDRGMAVALTKALELGN-----DTVLCASTGNTGAAAAAY 89 (328)
T ss_pred hhhhhccCCccCccchHHHHhcCCccEEehhhccCCchhhHhhhHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHHH
Confidence 457778899999999999887886 99999999999999999999999999998885 459999999999999999
Q ss_pred HHHcCCeEEEEeCCC-CCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCC--CcchHhhhhchH
Q 024022 88 AASRGYKLIIIMPST-YSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFEN--PANPEIHYETTG 164 (274)
Q Consensus 88 a~~~g~~~~i~~p~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~~~g~~t~~ 164 (274)
|+++|++|+||||++ +++.|+..++.+||+|+.+++ +++++.+.+++++++. +.++++++ | |.++ .||.|++
T Consensus 90 a~~~g~~~~v~~p~~~~s~~k~~~~~~~GA~Vi~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~-n~~~~~~-~g~~t~~ 164 (328)
T TIGR00260 90 AGKAGVKVVILYPAGKISLGKLAQALGYNAEVVAIDG--NFDDAQRLVKQLFGDK-EALGLNSV-NSIPYRL-EGQKTYA 164 (328)
T ss_pred hccCCCcEEEEECCCCCCHHHHHHHHhcCcEEEEecC--CHHHHHHHHHHHHhhc-CeeecccC-CCCCeEe-eeehhHH
Confidence 999999999999997 899999999999999999996 4889999999988875 45555544 5 8888 5999999
Q ss_pred HHHHHhhCC-CCCEEEEecCCcccHHHHHHHHHhhCC-----CcEEEEEecCCCcccc-----CCCCc-----ccccccC
Q 024022 165 PEIWNDSGG-KVDAFIAGIGTGGTVTGAGRFLKEKNP-----NIKVYGIEPSESAVLN-----GGQPG-----KHLIQGI 228 (274)
Q Consensus 165 ~Ei~~q~~~-~~d~iv~~vG~Gg~~~Gi~~~~k~~~~-----~~~vigve~~~~~~~~-----~~~~~-----~~~~~gl 228 (274)
+||++|+++ .||+||+|+|+||+++|++.+|++... .+++++|||.+++++. .++.. .+.++++
T Consensus 165 ~Ei~~q~~~~~~d~iv~~vG~GG~~~G~~~~~~~~~~~g~~~~p~v~~Ve~~~~~~~~~~~~~~g~~~~~~~~~t~~~~l 244 (328)
T TIGR00260 165 FEAVEQLGWEAPDKVVVPVPNSGNFGAILKGFKEKKEGGLDSLPVKRGIQAEGAADIVRAFLESGQWEPIEDPATLSTAI 244 (328)
T ss_pred HHHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHHHhcCCccCCceeEEEcCCCChHHHHHHcCCCcCcCCCCCccCcce
Confidence 999999975 799999999999999999999997511 2399999999985432 33221 2344555
Q ss_pred CCCCCccc------ccccccCeEEEeCHHHHHHHHHHHHHHcCCEecccCC
Q 024022 229 GAGVIPPV------LDVAMLDEVITVSSEEAIETSKLLALKEGLLQRQLLY 273 (274)
Q Consensus 229 ~~~~~~~~------~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~g~s~~ 273 (274)
+.+ .|.+ +.++++|+.+.|+|+|+++++++|++++|+++||||+
T Consensus 245 ~~~-~p~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~pssa 294 (328)
T TIGR00260 245 DIG-NPANWERALELFRRSNGNAEDVSDEEILEAIKLLAREEGYFVEPHSA 294 (328)
T ss_pred ecC-CCCCHHHHHHHHHhcCCcEEecCHHHHHHHHHHHHHhcCeeECchHH
Confidence 443 2322 2346789999999999999999999999999999975
No 59
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family. This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase).
Probab=100.00 E-value=1.4e-49 Score=361.74 Aligned_cols=264 Identities=18% Similarity=0.201 Sum_probs=220.5
Q ss_pred hhhHHHHhcccCCCcceecccccCCCC-ceEEEEeCCCC-CCCchhhHHHHHHHHHHHHc----------------CCCC
Q 024022 5 CEIKKDVTELIGHTPMVYLNNVVDGCV-ARIAAKLEMMQ-PCSSVKDRIAYSMIKDAEDK----------------GLIT 66 (274)
Q Consensus 5 ~~~~~~i~~~~~~TPl~~~~~l~~~~g-~~l~~K~E~~n-ptGS~K~R~a~~~~~~a~~~----------------g~~~ 66 (274)
...+.++..+ .+|||++++.|++.+| .+||+|+|++| ||||||+|++.+.+..+.++ +.+.
T Consensus 11 ~~~~~~~~~~-~~TPL~~~~~l~~~~g~~~v~~K~E~~~~~tgSFK~RG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (376)
T TIGR01747 11 LAFHKKIPGY-RPTPLCALDHLANLLGLKKILVKDESKRFGLNAFKMLGGSYAIAQYLAEKLHLDIETLSFEHLKNDAIG 89 (376)
T ss_pred HHHHHhCCCC-CCCCCcchHHHHHHhCCCcEEEeeCCCCCCCCChHHHHHHHHHHHHHHHHhCCCcccCCHHHHhhhHHH
Confidence 4456677655 9999999999999899 59999999998 58999999999999887653 1111
Q ss_pred C--CCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCe
Q 024022 67 P--GKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNG 144 (274)
Q Consensus 67 ~--g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~ 144 (274)
+ +..+||++|+||||+|+|++|+++|++|+||||+++++.|+..|+.+||+|+.+++ +|+++.+.+++++++. ++
T Consensus 90 ~~~~~~~vv~aSsGN~g~a~A~~Aa~~G~~~~I~vP~~~~~~k~~~i~~~GAeVi~v~~--~~~~a~~~a~~~~~~~-g~ 166 (376)
T TIGR01747 90 EKMGQATFATATDGNHGRGVAWAAQQLGQKAVVYMPKGSAQERVENILNLGAECTITDM--NYDDTVRLAMQMAQQH-GW 166 (376)
T ss_pred hhcCCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhc-Cc
Confidence 1 13469999999999999999999999999999999999999999999999999985 4889999999988876 67
Q ss_pred EeeC-----CCCC--CcchHhhhhchHHHHHHhhCC----CCCEEEEecCCcccHHHHHHHHHhhCC--CcEEEEEecCC
Q 024022 145 YILG-----QFEN--PANPEIHYETTGPEIWNDSGG----KVDAFIAGIGTGGTVTGAGRFLKEKNP--NIKVYGIEPSE 211 (274)
Q Consensus 145 ~~~~-----~~~~--~~~~~~g~~t~~~Ei~~q~~~----~~d~iv~~vG~Gg~~~Gi~~~~k~~~~--~~~vigve~~~ 211 (274)
++++ +|+| |..+ .||+|+++||++|+++ .||+||+|+|+||+++|++.++++..+ .++||+|||++
T Consensus 167 ~~~~~~~~~~~~~~~~~ii-~G~~Tia~Ei~eQl~~~~~~~pD~vvvpvG~GGl~~Gi~~~~~~~~~~~~p~vi~Vep~g 245 (376)
T TIGR01747 167 VVVQDTAWEGYEKIPTWIM-QGYATLADEAVEQLREMGSVTPTHVLLQAGVGSMAGGVLGYFVDVYSENNPHSIVVEPDK 245 (376)
T ss_pred EEeccccccccccCCchHH-HHHHHHHHHHHHHhhccCCCCCCEEEECCchhHHHHHHHHHHHHhcCCCCCEEEEEeeCC
Confidence 8876 4655 4445 6999999999999963 699999999999999999999987654 37999999999
Q ss_pred Ccccc----C--CCC------cccccccCCCCCC---cccccccccCeEEEeCHHHHHHHHHHHHHHc----CCEecccC
Q 024022 212 SAVLN----G--GQP------GKHLIQGIGAGVI---PPVLDVAMLDEVITVSSEEAIETSKLLALKE----GLLQRQLL 272 (274)
Q Consensus 212 ~~~~~----~--~~~------~~~~~~gl~~~~~---~~~~~~~~~d~~v~v~d~e~~~a~~~l~~~e----Gi~~g~s~ 272 (274)
++++. . +++ ..+.++||+++.. ++.+.++..|.++.|+|+|+.+|+++|++.. ++++|||+
T Consensus 246 a~~~~~s~~~~~g~~~~~~~~~~Tiadgl~~~~~~~~~~~~~~~~~~~~v~V~D~ei~~A~~~L~~~~g~~~~i~~epag 325 (376)
T TIGR01747 246 ADCLYQSAVKKDGDIVNVGGDMATIMAGLACGEPNPISWEILRNCTSQFISAQDSVAAKGMRVLGAPYGGDPRIISGESG 325 (376)
T ss_pred CCHHHHHHHhcCCCeEEcCCCccccccccccCCcchHHHHHHHhcCCEEEEcCHHHHHHHHHHHhcccCCCCeEeeeCch
Confidence 98763 2 332 1356788876532 4455678899999999999999999999965 49999997
Q ss_pred C
Q 024022 273 Y 273 (274)
Q Consensus 273 ~ 273 (274)
+
T Consensus 326 a 326 (376)
T TIGR01747 326 A 326 (376)
T ss_pred H
Confidence 5
No 60
>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-49 Score=334.44 Aligned_cols=265 Identities=40% Similarity=0.629 Sum_probs=230.3
Q ss_pred HHHHhcccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHH
Q 024022 8 KKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFI 87 (274)
Q Consensus 8 ~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~ 87 (274)
.+-+...+|+|||++++.|++..|++|+.|.|.+||.||.|||.|.+++..|++.|++-||.. |++.|+||+|+++|..
T Consensus 40 ~~Gv~~~IGnTpliri~sLs~aTGcnIlaK~Ef~NPggS~KDRvAl~iir~Aee~GkL~~gg~-v~EGtaGsTgIslA~v 118 (391)
T KOG1481|consen 40 VSGVEGAIGNTPLIRINSLSNATGCNILAKAEFLNPGGSVKDRVALYIIRTAEEKGKLVRGGT-VVEGTAGSTGISLAHV 118 (391)
T ss_pred cchhHHhhCCCceEEeeccccccccchhhhhhccCCCCChhhhhHHHHHHHHHHcCCcccCce-EEecCCCccchhHHHh
Confidence 345677899999999999999999999999999999999999999999999999999999965 9999999999999999
Q ss_pred HHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCC--ChhHHHHHHHHHHHhCC------CeEeeCCCCCCcchHhh
Q 024022 88 AASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAV--GFEGFVKKGEEILNRTP------NGYILGQFENPANPEIH 159 (274)
Q Consensus 88 a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~--~~~~~~~~a~~~~~~~~------~~~~~~~~~~~~~~~~g 159 (274)
|+.+|++|+|+||++.+.+|.+.++.+||+|..|++.. +-......|++.+.+.+ ..+|.+||+|+.|+.+|
T Consensus 119 ~~a~Gyk~~I~mPddqs~eK~~ile~LGA~V~rV~pa~i~dp~~yvn~Arr~an~~~~~~ngi~g~fAdQFeN~AN~~aH 198 (391)
T KOG1481|consen 119 ARALGYKCHIYMPDDQSQEKSDILEFLGAEVHRVPPAPIVDPNHYVNQARRAANETPNASNGIRGWFADQFENVANWLAH 198 (391)
T ss_pred hhhcCcceEEECCChHHHHHHHHHHHhcceeeecCCcCccChhHHHHHHHHHhhhcccccCCcccchhhhhcCHHHHHHH
Confidence 99999999999999999999999999999999997532 11233344444333322 24778999999999999
Q ss_pred hhchHHHHHHhhCCCCCEEEEecCCcccHHHHHHHHHhhCCC-cEEEEEecCCCcccc-------------CCCC----c
Q 024022 160 YETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPN-IKVYGIEPSESAVLN-------------GGQP----G 221 (274)
Q Consensus 160 ~~t~~~Ei~~q~~~~~d~iv~~vG~Gg~~~Gi~~~~k~~~~~-~~vigve~~~~~~~~-------------~~~~----~ 221 (274)
|.++|+||+.|..+++|.+++.+|+|||++|+.+++|+..+. ++++-.+|.+|-.+. .|+. .
T Consensus 199 yetTGPEIw~QtkGniDaFia~~GTGGTiaGVskyLkek~~~~v~~~laDPpGSGlYnkV~~GVmy~~~e~eG~r~r~q~ 278 (391)
T KOG1481|consen 199 YETTGPEIWHQTKGNIDAFIAGTGTGGTIAGVSKYLKEKSDGRVAVFLADPPGSGLYNKVNYGVMYDHIETEGTRRRNQV 278 (391)
T ss_pred hcCcCcHHHHhhcCCcceEEeccCCCcchHHHHHHHhhcCCCceEEEEeCCCCCchhhhhhhhhhhhhhhhcCcccCCCc
Confidence 999999999999999999999999999999999999998876 899999999995332 1221 3
Q ss_pred ccccccCCCCCCcccc--cccccCeEEEeCHHHHHHHHHHHHHHcCCEecccCC
Q 024022 222 KHLIQGIGAGVIPPVL--DVAMLDEVITVSSEEAIETSKLLALKEGLLQRQLLY 273 (274)
Q Consensus 222 ~~~~~gl~~~~~~~~~--~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~g~s~~ 273 (274)
.++.+|||...++.++ ..+++|+.+.|+|++++++.++|...+|+|+|.||+
T Consensus 279 dti~EGIGinRiT~Nf~m~~~liD~a~rv~Deqai~Msr~Ll~~dGLFvGsSsa 332 (391)
T KOG1481|consen 279 DTITEGIGINRITGNFQMAEDLIDDAMRVTDEQAINMSRYLLDNDGLFVGSSSA 332 (391)
T ss_pred chhhhcccccccccccccchhhhhhheecChHHHHHHHHHhhhcCceEecchhh
Confidence 4567899987776654 567899999999999999999999999999999986
No 61
>PRK13028 tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=3e-48 Score=354.03 Aligned_cols=260 Identities=22% Similarity=0.223 Sum_probs=206.4
Q ss_pred HHHhcccC-CCcceecccccCCC-CceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHH
Q 024022 9 KDVTELIG-HTPMVYLNNVVDGC-VARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAF 86 (274)
Q Consensus 9 ~~i~~~~~-~TPl~~~~~l~~~~-g~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~ 86 (274)
..+..+++ +|||+++++|++.+ |.+||+|+|++|||||||+|.+...+..+++.|+ ...|+++|+||||+|+|+
T Consensus 53 ~~~~~~~g~pTPL~~~~~Ls~~~Gg~~IylK~EdlnptGS~K~r~al~~~l~A~~~G~----~~vI~etgsGnhG~A~A~ 128 (402)
T PRK13028 53 YLLKHYVGRPTPLYHAKRLSEELGGAQIYLKREDLNHTGAHKINNCLGQALLAKRMGK----KRLIAETGAGQHGVATAT 128 (402)
T ss_pred HHHHHhCCCCCCeeehHHhHhhcCCCeEEEEECCCCCCcchHHHHHHHHHHHHHHcCC----CeEEEecCcHHHHHHHHH
Confidence 34456676 89999999999888 4899999999999999999999999999999886 444667899999999999
Q ss_pred HHHHcCCeEEEEeCCCCCH---HHHHHHHHCCCEEEEeCC-CCChhHHHHHHHH-HHHhCCCeEeeCC-CC--C--Ccch
Q 024022 87 IAASRGYKLIIIMPSTYSI---ERRIILRALGAEVYLADP-AVGFEGFVKKGEE-ILNRTPNGYILGQ-FE--N--PANP 156 (274)
Q Consensus 87 ~a~~~g~~~~i~~p~~~~~---~~~~~~~~~Ga~v~~~~~-~~~~~~~~~~a~~-~~~~~~~~~~~~~-~~--~--~~~~ 156 (274)
+|+++|++|+||||+..+. .++.+|+.+||+|+.++. ..+++++.+.+.+ +.++.++.+|+.+ .. + |.++
T Consensus 129 aaa~~Gl~~~I~m~~~d~~~q~~nv~~mr~~GAeVi~v~~g~~~~~~a~~~a~~~~~~~~~~~~y~~~s~~gp~p~p~~v 208 (402)
T PRK13028 129 AAALFGLECEIYMGEVDIERQHPNVFRMKLLGAEVVPVTRGGRTLKEAVDSAFEDYLKDPDNTHYAIGSVVGPHPFPMMV 208 (402)
T ss_pred HHHHcCCCEEEEECCCcchhhHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHhcCCcEEEecCcCCCCCcHHHH
Confidence 9999999999999985433 567899999999999984 3468888888755 4555345666632 21 2 3344
Q ss_pred HhhhhchHHHHHHhhC----CCCCEEEEecCCcccHHHHHHHHHhhCCCcEEEEEecCC--------CccccCCCCc---
Q 024022 157 EIHYETTGPEIWNDSG----GKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSE--------SAVLNGGQPG--- 221 (274)
Q Consensus 157 ~~g~~t~~~Ei~~q~~----~~~d~iv~~vG~Gg~~~Gi~~~~k~~~~~~~vigve~~~--------~~~~~~~~~~--- 221 (274)
..||.+++.||.+|+. ..||+||+|+|+||+++|++.+|++ .++++||||||.+ ++++..+.+.
T Consensus 209 ~~~q~tig~Ei~~Q~~~~~g~~pD~vV~~VGgGg~~~Gi~~~f~~-~~~v~iigVE~~G~~~~~~~~aa~l~~g~~g~~~ 287 (402)
T PRK13028 209 RDFQSVIGEEAREQFLEMTGRLPDAVVACVGGGSNAIGLFSAFLD-DESVRLVGVEPAGRGLDLGEHAATLTLGKPGVIH 287 (402)
T ss_pred HHHhHHHHHHHHHHHHHhhCCCCCEEEEEcCchHHHHHHHHHHHh-CCCceEEEEecCCCCcccccccccccCCCcceec
Confidence 4589999999999973 3599999999999999999999986 4889999999998 5555544331
Q ss_pred -----------------ccccccCCCCCC-cc--cccccccCeEEEeCHHHHHHHHHHHHHHcCCEecccCC
Q 024022 222 -----------------KHLIQGIGAGVI-PP--VLDVAMLDEVITVSSEEAIETSKLLALKEGLLQRQLLY 273 (274)
Q Consensus 222 -----------------~~~~~gl~~~~~-~~--~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~g~s~~ 273 (274)
.++..||..+.+ |. .+.....|+++.|+|+|+++|+++|+++|||++++||+
T Consensus 288 g~~~~~l~~~~g~~~~~~sia~gl~~~~vgp~~~~l~~~~~~~~v~VtD~eal~a~~~La~~eGIi~~~~sa 359 (402)
T PRK13028 288 GFKSYVLQDEDGEPAPVHSIAAGLDYPGVGPEHAYLKDIGRVEYVTATDEEALDAFFLLSRTEGIIPALESS 359 (402)
T ss_pred ccceeeccccCCCcCCccceeccccCCCCCHHHHHHHHhcCcEEEEECHHHHHHHHHHHHHhcCCeeccHHH
Confidence 123345543222 22 23345568999999999999999999999999999985
No 62
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions.
Probab=100.00 E-value=3.5e-48 Score=352.81 Aligned_cols=263 Identities=22% Similarity=0.220 Sum_probs=204.9
Q ss_pred hhhHHHHhcccC-CCcceecccccCCC-CceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEE-eCCChHH
Q 024022 5 CEIKKDVTELIG-HTPMVYLNNVVDGC-VARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIE-LTSGNTG 81 (274)
Q Consensus 5 ~~~~~~i~~~~~-~TPl~~~~~l~~~~-g~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~-~ssGN~g 81 (274)
.+++.....+++ +|||++++++++.+ +.+||+|+|++|||||||||.+..++..+.++|. .. +|+ +|+||||
T Consensus 21 ~~~~~~~~~~~~~~TPL~~l~~l~~~~g~~~l~~K~E~~nptgS~K~R~a~~~~~~a~~~g~----~~-vv~~~ssGN~g 95 (365)
T cd06446 21 EELRELYKDYVGRPTPLYRAKRLSEYLGGAKIYLKREDLNHTGAHKINNALGQALLAKRMGK----KR-VIAETGAGQHG 95 (365)
T ss_pred HHHHHHhhccCCCCCCceehHHHHHhhCCceEEEEeccCCCccchhHHHHHHHHHHHHHcCC----Ce-EEEecCchHHH
Confidence 445666666654 99999999998877 5799999999999999999999999999999885 34 555 6999999
Q ss_pred HHHHHHHHHcCCeEEEEeCCCCC---HHHHHHHHHCCCEEEEeCCC-CChhHHHHHHHHH-HHhC-CCeEeeCCCC----
Q 024022 82 IGLAFIAASRGYKLIIIMPSTYS---IERRIILRALGAEVYLADPA-VGFEGFVKKGEEI-LNRT-PNGYILGQFE---- 151 (274)
Q Consensus 82 ~alA~~a~~~g~~~~i~~p~~~~---~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~-~~~~-~~~~~~~~~~---- 151 (274)
+|+|++|+++|++|+||||+..+ +.|+.+|+.+||+|+.++.. ..+++++..+.+. .++. +.+|+++++.
T Consensus 96 ~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~~~~GAeV~~~~~~~~~~~~~~~~a~~~~~~~~~~~~y~~~~~~~~~~ 175 (365)
T cd06446 96 VATATACALFGLECEIYMGAVDVERQPLNVFRMELLGAEVVPVPSGSGTLKDAISEAIRDWVTNVEDTHYLLGSVVGPHP 175 (365)
T ss_pred HHHHHHHHHhCCCeEEEEcCCccccccchHHHHHHCCCEEEEeCCCCCcHHHHHHHHHHHHHhccCCceEecccccCCCC
Confidence 99999999999999999998643 35788999999999999853 2356665545444 3332 2344444331
Q ss_pred CCcchHhhhhchHHHHHHhhCC----CCCEEEEecCCcccHHHHHHHHHhhCCCcEEEEEecCCCccccCC--------C
Q 024022 152 NPANPEIHYETTGPEIWNDSGG----KVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGG--------Q 219 (274)
Q Consensus 152 ~~~~~~~g~~t~~~Ei~~q~~~----~~d~iv~~vG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~~~--------~ 219 (274)
++.++.+||.|+++||++|+++ .||+||+|+|+||+++|++++++. .+++|||+|||.+++.+... .
T Consensus 176 ~~~~~~ag~~t~~~EI~~Q~~~~~~~~~D~vv~~vG~GGt~~Gi~~g~~~-~~~~~vigVep~gs~~~~~~~~~~~~~g~ 254 (365)
T cd06446 176 YPNMVRDFQSVIGEEAKKQILEKEGELPDVVIACVGGGSNAAGLFYPFIN-DKDVKLIGVEAGGCGLETGGHAAYLFGGT 254 (365)
T ss_pred chHHHHHhhhHHHHHHHHHHHHhcCCCCCEEEEecCccHHHHHHHHHHHh-CCCceEEEEcCCCCccccccceeeccCCC
Confidence 2345568999999999999863 699999999999999999998877 46899999999998766421 1
Q ss_pred C--------------------cccccccCCCCC-Ccc--cccccccCeEEEeCHHHHHHHHHHHHHHcCCEecccCC
Q 024022 220 P--------------------GKHLIQGIGAGV-IPP--VLDVAMLDEVITVSSEEAIETSKLLALKEGLLQRQLLY 273 (274)
Q Consensus 220 ~--------------------~~~~~~gl~~~~-~~~--~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~g~s~~ 273 (274)
. ..+.+++|+.+. .+. .+..+.+|+++.|+|+|+++++++|+++|||++||||+
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~t~a~gl~~~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~r~la~~eGi~~epssg 331 (365)
T cd06446 255 AGVLHGLKMYTLQDEDGQIVPPHSISAGLDYPGVGPEHAYLKDSGRVEYVAVTDEEALEAFKLLARTEGIIPALESS 331 (365)
T ss_pred cceecchhhhccccccCCCCCcccccccccCCCCCHHHHHHHHhCCceEEEeChHHHHHHHHHHHHhcCceeCccch
Confidence 0 112334555321 122 23456789999999999999999999999999999875
No 63
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.
Probab=100.00 E-value=8.1e-49 Score=358.98 Aligned_cols=262 Identities=18% Similarity=0.183 Sum_probs=214.1
Q ss_pred hHHHHhcccCCCcceecccccCCCC-ceEEEEeCCCC-CCCchhhHHHHHHHHHHHH--cCCC--------------C--
Q 024022 7 IKKDVTELIGHTPMVYLNNVVDGCV-ARIAAKLEMMQ-PCSSVKDRIAYSMIKDAED--KGLI--------------T-- 66 (274)
Q Consensus 7 ~~~~i~~~~~~TPl~~~~~l~~~~g-~~l~~K~E~~n-ptGS~K~R~a~~~~~~a~~--~g~~--------------~-- 66 (274)
.+.++. .+.+|||++++.|++.+| .+||+|+|++| ||||||+||+.+.+..+.+ .|.. .
T Consensus 32 ~~~~~~-~~~~TPL~~~~~L~~~~g~~~v~lK~E~~q~~tGSFK~RGa~~~v~~l~~~~~g~~~~~~~~~~l~~~~~~~~ 110 (396)
T TIGR03528 32 FHQSFP-GYQPTPLAELDNLAKHLGVGSILVKDESYRFGLNAFKVLGGSYAIGKYLAEKLGKDISELSFEKLKSNEIREK 110 (396)
T ss_pred HHhcCC-CCcCCCCcchHHHHHHhCCCcEEEeeCCCCCCcCChHHHHHHHHHHHHHHHHhCCCcccccHHHhhhHHHHhh
Confidence 344553 559999999999999899 69999999988 5999999999999988633 2210 0
Q ss_pred CCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEe
Q 024022 67 PGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYI 146 (274)
Q Consensus 67 ~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 146 (274)
....+||++|+||||+++|++|+++|++|+||||+++++.|++.|+.+||+|+.++. +++++.+.+++++++. +++|
T Consensus 111 ~~~~~vv~aSsGN~g~alA~~aa~~Gi~~~IvvP~~~~~~K~~~ir~~GAeVi~~~~--~~~~a~~~a~~~a~~~-g~~~ 187 (396)
T TIGR03528 111 LGDITFVTATDGNHGRGVAWAANQLGQKSVVYMPKGSAQIRLENIRAEGAECTITDL--NYDDAVRLAWKMAQEN-GWVM 187 (396)
T ss_pred ccCcEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHhc-CcEe
Confidence 001259999999999999999999999999999999999999999999999999985 4888999999998876 7888
Q ss_pred eC-----CCCC--CcchHhhhhchHHHHHHhhC----CCCCEEEEecCCcccHHHHHHHHHhh-CCC-cEEEEEecCCCc
Q 024022 147 LG-----QFEN--PANPEIHYETTGPEIWNDSG----GKVDAFIAGIGTGGTVTGAGRFLKEK-NPN-IKVYGIEPSESA 213 (274)
Q Consensus 147 ~~-----~~~~--~~~~~~g~~t~~~Ei~~q~~----~~~d~iv~~vG~Gg~~~Gi~~~~k~~-~~~-~~vigve~~~~~ 213 (274)
++ +|+| +..+ .||.|+++||++|++ +.||+||+|+|+||+++|++.++++. .+. ++||+|||++++
T Consensus 188 v~~~~~~~~~~~~~~~i-~G~~Tig~EI~eQl~~~~~~~pD~vvvpvG~Ggl~~gi~~~~~~~~~~~~p~vi~Vep~~a~ 266 (396)
T TIGR03528 188 VQDTAWEGYEKIPTWIM-QGYGTLALEALEQLKEQGVEKPTHVFLQAGVGSFAGAVQGYFASAYGEERPITVIVEPDAAD 266 (396)
T ss_pred eccccccccccCchHHH-HHHhHHHHHHHHHHhhcCCCCCCEEEEcCCcchHHHHHHHHHHHhcCCCCCEEEEEccCCCc
Confidence 75 5765 3333 699999999999996 26999999999999999999988554 444 599999999988
Q ss_pred cccC------CCC------cccccccCCCCC---CcccccccccCeEEEeCHHHHHHHHHHHHH----HcCCEecccCC
Q 024022 214 VLNG------GQP------GKHLIQGIGAGV---IPPVLDVAMLDEVITVSSEEAIETSKLLAL----KEGLLQRQLLY 273 (274)
Q Consensus 214 ~~~~------~~~------~~~~~~gl~~~~---~~~~~~~~~~d~~v~v~d~e~~~a~~~l~~----~eGi~~g~s~~ 273 (274)
++.. +++ ..+.++|++++. .++.+.++++|+++.|+|+|+.+++++|++ ++++++|||++
T Consensus 267 ~l~~s~~~~~g~~~~~~g~~~Tiadgl~~~~p~~~~~~~~~~~~d~~v~VsD~ei~~a~r~La~~~~~~~~~~~epsga 345 (396)
T TIGR03528 267 CLYRSAIADDGKPHFVTGDMATIMAGLACGEPNTIGWEILRDYASQFISCPDWVAAKGMRILGNPLKGDPRVISGESGA 345 (396)
T ss_pred hHHHHHHhcCCCEEEeCCCccceecccccCCccHHHHHHHHHhCCeEEEECHHHHHHHHHHHhcccCCCCceeecCcHH
Confidence 7641 221 134567776542 233445678999999999999999999998 67999999985
No 64
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme. This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.
Probab=100.00 E-value=5.1e-48 Score=355.20 Aligned_cols=259 Identities=22% Similarity=0.250 Sum_probs=205.1
Q ss_pred hhHHHHhcccCCCcceecccccCCCC--ceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEE-eCCChHHH
Q 024022 6 EIKKDVTELIGHTPMVYLNNVVDGCV--ARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIE-LTSGNTGI 82 (274)
Q Consensus 6 ~~~~~i~~~~~~TPl~~~~~l~~~~g--~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~-~ssGN~g~ 82 (274)
++.+.+.+..++|||+++++|++.+| .+||+|+|++|||||||+|++.+++.+++++|. .. +++ +|+||||+
T Consensus 57 ~v~~~~~l~g~pTPL~r~~~L~~~lg~~~~Iy~K~E~~nPtGS~K~R~A~~~~~~a~~~G~----~~-~vtetssGN~G~ 131 (419)
T TIGR01415 57 EVLKRYAQIGRPTPLIRAKGLEELLGTPARIYYKYESVSPTGSHKINTAIAQAYYAKIEGA----KR-LVTETGAGQWGS 131 (419)
T ss_pred HHHHHHHhcCCCCCeEEccchhhhhCCCceEEEEECCCCCCCCcHHHHHHHHHHHHHHcCC----Ce-EEEecCchHHHH
Confidence 45555555557999999999998777 699999999999999999999999999999996 34 564 68999999
Q ss_pred HHHHHHHHcCCeEEEEeCCCC---CHHHHHHHHHCCCEEEEeCCCCChhH------------------HHHHHHHHHHhC
Q 024022 83 GLAFIAASRGYKLIIIMPSTY---SIERRIILRALGAEVYLADPAVGFEG------------------FVKKGEEILNRT 141 (274)
Q Consensus 83 alA~~a~~~g~~~~i~~p~~~---~~~~~~~~~~~Ga~v~~~~~~~~~~~------------------~~~~a~~~~~~~ 141 (274)
|+|++|+++|++|+||||+.. ++.|+.+|+.+||+|+.++.+ +++ ++..+.+.+++.
T Consensus 132 alA~aaa~~Gl~~~V~mp~~s~~~k~~k~~~m~~~GA~Vi~~~~~--~~~~~r~~~~~~p~~~gsl~~ai~~a~e~a~~~ 209 (419)
T TIGR01415 132 ALSLAGALFGLECKVFMVRVSFNQKPYRKYLMELYGAEVIPSPSE--FTEFGREVLKEDPDHPGSLGIAISEAIEYALSD 209 (419)
T ss_pred HHHHHHHHcCCcEEEEEeCCCcccCHHHHHHHHHcCCEEEEECCc--hhhHHHHhhhcccccccchHHHHHHHHHHHHhC
Confidence 999999999999999999843 568899999999999999864 222 355666666654
Q ss_pred C-CeEeeCCCCCCcchHhhhhchHHHHHHhhCC---CCCEEEEecCCcccHHHHHHHHHhh----CCCcEEEEEecCCCc
Q 024022 142 P-NGYILGQFENPANPEIHYETTGPEIWNDSGG---KVDAFIAGIGTGGTVTGAGRFLKEK----NPNIKVYGIEPSESA 213 (274)
Q Consensus 142 ~-~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~---~~d~iv~~vG~Gg~~~Gi~~~~k~~----~~~~~vigve~~~~~ 213 (274)
+ ..|+++++.|+ ...||.++|+||++|++. .||+||+|+|+||+++|++.+|.+. .+++|||+|||++|+
T Consensus 210 ~~~~y~~~~~~n~--~~~h~~~ig~Ei~~Ql~~~g~~pD~vv~~vG~Gg~~~Gi~~~f~~~~l~g~~~~rviaVep~~~~ 287 (419)
T TIGR01415 210 EDTKYSLGSVLNH--VLLHQTVIGLEAKKQMEEAGEDPDVIIGCVGGGSNFAGLAFPFVADKLSGKIDRRFIAAEPKACP 287 (419)
T ss_pred CCCEEEeCCCCcH--HHHHHHHHHHHHHHHHHhcCCCCCEEEEEeCchHHHHHHHHHHHHHHhcCCCCCEEEEEeeCCCh
Confidence 3 45666666553 336999999999999964 4999999999999999999888332 358999999999998
Q ss_pred cccCCCC-----------cccccccCCCCCCcccc-----------------cccccCeEEEeCHHHHHHHHHHHHHHcC
Q 024022 214 VLNGGQP-----------GKHLIQGIGAGVIPPVL-----------------DVAMLDEVITVSSEEAIETSKLLALKEG 265 (274)
Q Consensus 214 ~~~~~~~-----------~~~~~~gl~~~~~~~~~-----------------~~~~~d~~v~v~d~e~~~a~~~l~~~eG 265 (274)
.+..+.. ....+.++|..+.|..+ .++.+++++.|+|+|+++|+++|+++||
T Consensus 288 ~l~~g~~~yd~~~~~~~~p~~~~~~lG~~~~p~~~~a~gl~~~~~~~~~~~l~~~~~~~~~~V~d~e~~~a~r~la~~eG 367 (419)
T TIGR01415 288 TLTRGEYRYDFGDTAGLTPLLKMYTLGHDFIPPPIHAGGLRYHGVAPTLSLLVNLGIVEARAYDQEEAFEAAVIFAKTEG 367 (419)
T ss_pred hhhcCcccccccccccCCcceeeeecCCCCCCcceeccccccCCccHHHHHHhhcCceEEEEECHHHHHHHHHHHHHhcC
Confidence 7754421 01223455544433321 1344557899999999999999999999
Q ss_pred CEecccCC
Q 024022 266 LLQRQLLY 273 (274)
Q Consensus 266 i~~g~s~~ 273 (274)
|++||||+
T Consensus 368 i~~epssa 375 (419)
T TIGR01415 368 IVPAPESA 375 (419)
T ss_pred CccccHHH
Confidence 99999975
No 65
>TIGR00263 trpB tryptophan synthase, beta subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model.
Probab=100.00 E-value=4.4e-48 Score=353.89 Aligned_cols=261 Identities=21% Similarity=0.242 Sum_probs=202.5
Q ss_pred HHHHhcccC-CCcceecccccCCCC-ceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHH
Q 024022 8 KKDVTELIG-HTPMVYLNNVVDGCV-ARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLA 85 (274)
Q Consensus 8 ~~~i~~~~~-~TPl~~~~~l~~~~g-~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA 85 (274)
+..+..+++ +|||+++++|++.+| .+||+|+|++|||||||+|++..++..+++.|. ...|+++|+||||+|+|
T Consensus 40 ~~~~~~~~~~~TPL~~~~~l~~~~g~~~iy~K~E~~nptGS~K~R~a~~~~~~a~~~g~----~~vi~e~ssGN~G~alA 115 (385)
T TIGR00263 40 NELLRNYAGRPTPLTFAPNLTEALGGAKIYLKREDLNHTGAHKINNALGQALLAKRMGK----KRIIAETGAGQHGVATA 115 (385)
T ss_pred HHHHHHhCCCCCCceehHHHHHHhCCCeEEEEeCCCCCCccchHHHHHHHHHHHHHcCC----CEEEEEcCcHHHHHHHH
Confidence 344555564 899999999998887 799999999999999999999999999988884 34355789999999999
Q ss_pred HHHHHcCCeEEEEeCCC-CCH--HHHHHHHHCCCEEEEeCCC-CChhHHH-HHHHHHHHhCCCeEee-CCCCC----Ccc
Q 024022 86 FIAASRGYKLIIIMPST-YSI--ERRIILRALGAEVYLADPA-VGFEGFV-KKGEEILNRTPNGYIL-GQFEN----PAN 155 (274)
Q Consensus 86 ~~a~~~g~~~~i~~p~~-~~~--~~~~~~~~~Ga~v~~~~~~-~~~~~~~-~~a~~~~~~~~~~~~~-~~~~~----~~~ 155 (274)
++|+++|++|+||||+. .+. .++++|+.+||+|+.++.. ..++++. +.+++++++.++.+|+ .++.| +.+
T Consensus 116 ~~a~~~Gl~~~Iv~p~~~~~~~~~~~~~~~~~GA~Vv~v~~~~~~~~~a~~~~~~~~~~~~~~~~y~~~~~~~~~p~~~~ 195 (385)
T TIGR00263 116 TAAALLGLDCEVYMGAEDVERQKPNVFRMELLGAKVIPVTSGSGTLKDAVNEALRDWVTSVDDTHYVLGSAVGPHPFPTM 195 (385)
T ss_pred HHHHHcCCCEEEEecCCcccccchHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCceEEeCCcCCCCCchHH
Confidence 99999999999999985 443 5788999999999999753 3466664 4444555554455565 44432 244
Q ss_pred hHhhhhchHHHHHHhhC----CCCCEEEEecCCcccHHHHHHHHHhhCCCcEEEEEecCCCc--------cccCCCC---
Q 024022 156 PEIHYETTGPEIWNDSG----GKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESA--------VLNGGQP--- 220 (274)
Q Consensus 156 ~~~g~~t~~~Ei~~q~~----~~~d~iv~~vG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~--------~~~~~~~--- 220 (274)
+..||+|+++||++|+. ..||+||+|+|+||+++|++.++.. .|++|||+|||+++. .+..+.+
T Consensus 196 ~~~~~~t~g~Ei~~Ql~~~~~~~pD~vv~~vG~Gg~~~Gv~~~~~~-~~~~~iigVe~~gs~~~~~~~~~~~~~g~~~~~ 274 (385)
T TIGR00263 196 VRDFQSVIGEEAKEQILEQEGRLPDAVIACVGGGSNAIGIFYAFID-DPSVQLIGVEAGGLGIDTDKHAATLAKGSPGVL 274 (385)
T ss_pred HHHHhhHHHHHHHHHHHhhhCCCCCEEEEEeCchHHHHHHHHHHhh-CCCCeEEEEEeCCCcccchhhhhhhhcCCeeEe
Confidence 55799999999999973 2589999999999999999998854 699999999999862 2222321
Q ss_pred -----------------cccccccCCCCCC-c--ccccccccCeEEEeCHHHHHHHHHHHHHHcCCEecccCC
Q 024022 221 -----------------GKHLIQGIGAGVI-P--PVLDVAMLDEVITVSSEEAIETSKLLALKEGLLQRQLLY 273 (274)
Q Consensus 221 -----------------~~~~~~gl~~~~~-~--~~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~g~s~~ 273 (274)
..+++.+++.... | +.+....+|+++.|+|+|+++++++|+++|||++||||+
T Consensus 275 ~~~~~~~~~~~~~~~~~~~tia~gl~~~~~~p~~~~~~~~~~~~~v~Vsd~e~~~a~~~la~~egi~~~~ssa 347 (385)
T TIGR00263 275 HGMKTYLLQDEDGQILEAHSVSAGLDYPGVGPEHAYLHETGRATYEAITDDEALEAFKLLSRNEGIIPALESS 347 (385)
T ss_pred cCcccccccCCCCcccccceeeccccCCCCCHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHhcCCeechHHH
Confidence 0123344433221 2 223445678999999999999999999999999999985
No 66
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=100.00 E-value=9.8e-48 Score=350.10 Aligned_cols=260 Identities=20% Similarity=0.259 Sum_probs=202.1
Q ss_pred HHHhcccC-CCcceecccccCCC-CceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHH
Q 024022 9 KDVTELIG-HTPMVYLNNVVDGC-VARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAF 86 (274)
Q Consensus 9 ~~i~~~~~-~TPl~~~~~l~~~~-g~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~ 86 (274)
..+..++| +|||+++++|++.+ |.+||+|+|++|||||||+|++...+..|++.|+ ...|+++|+||||+|+|+
T Consensus 49 ~~~~~~~grpTPL~~~~~Ls~~~gg~~IylK~EdlnptGS~K~r~al~~~l~A~~~Gk----~~vIaetgaGnhG~A~A~ 124 (397)
T PRK04346 49 YLLKNYVGRPTPLYFAERLSEHLGGAKIYLKREDLNHTGAHKINNVLGQALLAKRMGK----KRIIAETGAGQHGVATAT 124 (397)
T ss_pred HHHHHhcCCCCCceEhHHHHHHcCCCeEEEEECCCCCccchHHHHHHHHHHHHHHcCC----CeEEEecCcHHHHHHHHH
Confidence 34556776 59999999999988 5899999999999999999999999999999986 444566899999999999
Q ss_pred HHHHcCCeEEEEeCCC-CC--HHHHHHHHHCCCEEEEeCC-CCChhHHHHHHHH-HHHhCCCeEee-CCCCC----Ccch
Q 024022 87 IAASRGYKLIIIMPST-YS--IERRIILRALGAEVYLADP-AVGFEGFVKKGEE-ILNRTPNGYIL-GQFEN----PANP 156 (274)
Q Consensus 87 ~a~~~g~~~~i~~p~~-~~--~~~~~~~~~~Ga~v~~~~~-~~~~~~~~~~a~~-~~~~~~~~~~~-~~~~~----~~~~ 156 (274)
+|+++|++|+||||+. .+ ..++.+|+.+||+|+.++. ..+++++.+.+.+ +.++.++.+|+ .+..+ |.++
T Consensus 125 ~aa~~Gl~c~I~mp~~d~~rq~~nv~~m~~lGA~Vv~v~~g~~~l~da~~ea~~~~~~~~~~~~y~~gs~~gphp~p~~v 204 (397)
T PRK04346 125 AAALLGLECVIYMGAEDVERQALNVFRMKLLGAEVVPVTSGSRTLKDAVNEALRDWVTNVEDTHYLIGSVAGPHPYPTMV 204 (397)
T ss_pred HHHHcCCcEEEEecCCchhhhhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEeCCcCCCCCchHHH
Confidence 9999999999999985 33 3577889999999999984 3457666665554 45553344554 33322 2334
Q ss_pred HhhhhchHHHHHHhhC----CCCCEEEEecCCcccHHHHHHHHHhhCCCcEEEEEecCCCc--------cccCCCC----
Q 024022 157 EIHYETTGPEIWNDSG----GKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESA--------VLNGGQP---- 220 (274)
Q Consensus 157 ~~g~~t~~~Ei~~q~~----~~~d~iv~~vG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~--------~~~~~~~---- 220 (274)
..||.|++.||++|+. ..||+||+|+|+||+++|++.+|+. .|++|||||||.++. ++..+++
T Consensus 205 ~~~q~tig~Ei~eQ~~~~~g~~pD~vVa~VGgGg~~~Gi~~~f~~-~~~v~iigVE~~G~~~~~~~~~a~l~~g~~g~~~ 283 (397)
T PRK04346 205 RDFQSVIGEEAKAQILEKEGRLPDAVVACVGGGSNAIGIFHPFID-DESVRLIGVEAAGKGLETGKHAATLTKGRPGVLH 283 (397)
T ss_pred HHhcchHHHHHHHHHHHhhCCCCCEEEEecCccHhHHHHHHHHhh-CCCCeEEEEecCCCccccccccchhhcCCeeeec
Confidence 4699999999999984 3599999999999999999999965 889999999999862 2222222
Q ss_pred ----------------cccccccCCCCCC-c--ccccccccCeEEEeCHHHHHHHHHHHHHHcCCEecccCC
Q 024022 221 ----------------GKHLIQGIGAGVI-P--PVLDVAMLDEVITVSSEEAIETSKLLALKEGLLQRQLLY 273 (274)
Q Consensus 221 ----------------~~~~~~gl~~~~~-~--~~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~g~s~~ 273 (274)
..++..||..+.+ | ..+.....++++.|+|+|+++|+++|+++|||+.+++|+
T Consensus 284 g~~~~~~~~~~g~~~~~~sis~gL~~pgvgp~~~~l~~~~~~~~v~VtD~eal~a~~~L~~~eGIi~~~esa 355 (397)
T PRK04346 284 GAKTYLLQDEDGQILETHSISAGLDYPGVGPEHAYLKDIGRAEYVSITDDEALEAFQLLSRLEGIIPALESS 355 (397)
T ss_pred cccceecccCCCccCCCceeeccccCCCCCHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHcCCEeccHHH
Confidence 1123344433222 1 223445667999999999999999999999999888774
No 67
>PRK12391 tryptophan synthase subunit beta; Reviewed
Probab=100.00 E-value=1.9e-47 Score=351.87 Aligned_cols=255 Identities=21% Similarity=0.237 Sum_probs=202.6
Q ss_pred cccCCCcceecccccCCCC--ceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEE-eCCChHHHHHHHHHH
Q 024022 13 ELIGHTPMVYLNNVVDGCV--ARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIE-LTSGNTGIGLAFIAA 89 (274)
Q Consensus 13 ~~~~~TPl~~~~~l~~~~g--~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~-~ssGN~g~alA~~a~ 89 (274)
..+++|||+++++|++.+| .+||+|+|++|||||||+|++..++..+++.|. .. +++ +|+||||+|+|++|+
T Consensus 73 ~~~~~TPL~~~~~L~~~lg~~~~Iy~K~E~~nPtGS~K~R~A~~~a~~a~~~G~----~~-~vtetgsGN~G~alA~aaa 147 (427)
T PRK12391 73 RLWRPTPLIRARRLEKALGTPAKIYYKYEGVSPTGSHKPNTAVAQAYYNKKEGI----KR-LTTETGAGQWGSALALACA 147 (427)
T ss_pred cccCCCCeeEchhhHhhhCCCceEEEEEcCCCCCCChHHHHHHHHHHHHHHCCC----CE-EEEccCchHHHHHHHHHHH
Confidence 5678999999999988776 699999999999999999999999999999996 34 665 579999999999999
Q ss_pred HcCCeEEEEeCCC---CCHHHHHHHHHCCCEEEEeCCCCC----------------hhHHHHHHHHHHHhCCCeEeeCCC
Q 024022 90 SRGYKLIIIMPST---YSIERRIILRALGAEVYLADPAVG----------------FEGFVKKGEEILNRTPNGYILGQF 150 (274)
Q Consensus 90 ~~g~~~~i~~p~~---~~~~~~~~~~~~Ga~v~~~~~~~~----------------~~~~~~~a~~~~~~~~~~~~~~~~ 150 (274)
++|++|+||||+. .++.|+.+|+.+||+|+.++.+.+ +..++..+.+.+++.++.+|...+
T Consensus 148 ~~Gl~~~V~mp~~s~~~k~~r~~~mr~~GA~Vi~~~~~~~~~~~~~~~~~~~~~gsl~~ai~~A~e~a~~~~~~~y~~~s 227 (427)
T PRK12391 148 LFGLECTVFMVRVSYEQKPYRRSLMETYGAEVIPSPSDLTEAGRKILAEDPDHPGSLGIAISEAVEDAAKRPDTKYALGS 227 (427)
T ss_pred HcCCcEEEEEecCCcccCHHHHHHHHHCCCEEEEECCchhhhhhhhhhcCccccccHHHHHHHHHHHHHhCCCcEEEcCC
Confidence 9999999999974 356789999999999999985311 112466777777665455555444
Q ss_pred CCCcchHhhhhchHHHHHHhhC---CCCCEEEEecCCcccHHHHHHHHHh---hC-CCcEEEEEecCCCccccCCCC---
Q 024022 151 ENPANPEIHYETTGPEIWNDSG---GKVDAFIAGIGTGGTVTGAGRFLKE---KN-PNIKVYGIEPSESAVLNGGQP--- 220 (274)
Q Consensus 151 ~~~~~~~~g~~t~~~Ei~~q~~---~~~d~iv~~vG~Gg~~~Gi~~~~k~---~~-~~~~vigve~~~~~~~~~~~~--- 220 (274)
.+ .+...||.++++||++|++ ..||+||+|+|+||+++|++.+|.. .+ +++|||+|||++|+++..+..
T Consensus 228 ~~-~~~~~~~~~ig~Ei~~Ql~~~g~~pD~Vv~~vG~Gg~~aGi~~~f~~~~~~g~~~~riiaVEp~~~~~l~~g~~~~~ 306 (427)
T PRK12391 228 VL-NHVLLHQTVIGLEAKKQLELAGEYPDVVIGCVGGGSNFAGLAFPFLGDKLEGKKDTRFIAVEPAACPTLTKGEYAYD 306 (427)
T ss_pred CC-cHHHhhHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHHHhcCCCCceEEEEeeccchhhcccccccc
Confidence 32 3344699999999999996 3699999999999999999997733 34 889999999999988764321
Q ss_pred -----c--c-cccccCCCCCCccccc-----------------ccccCeEEEeCHHHHHHHHHHHHHHcCCEecccCC
Q 024022 221 -----G--K-HLIQGIGAGVIPPVLD-----------------VAMLDEVITVSSEEAIETSKLLALKEGLLQRQLLY 273 (274)
Q Consensus 221 -----~--~-~~~~gl~~~~~~~~~~-----------------~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~g~s~~ 273 (274)
. + ..+.++|..+.|..+. ...+.+.+.|+|+|+++++++|+++|||++||||+
T Consensus 307 ~gd~~~~~p~~~~~~lG~~~~p~~~~a~gl~~~g~~~~~~~l~~~~~~~~~~V~d~e~~~a~~~~a~~eGi~~~pss~ 384 (427)
T PRK12391 307 FGDTAGLTPLLKMYTLGHDFVPPPIHAGGLRYHGMAPLVSLLVHEGLIEARAYPQTEVFEAAVLFARTEGIVPAPESS 384 (427)
T ss_pred ccccccCCccceeEecCCCCCCccccccccccCCchHHHHHHHhcCceEEEEECHHHHHHHHHHHHHHcCCeechHHH
Confidence 1 1 2345666554443321 23344889999999999999999999999999985
No 68
>PLN02618 tryptophan synthase, beta chain
Probab=100.00 E-value=2.2e-47 Score=348.45 Aligned_cols=262 Identities=20% Similarity=0.273 Sum_probs=202.8
Q ss_pred hHHHHhcccC-CCcceecccccCCC------CceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCCh
Q 024022 7 IKKDVTELIG-HTPMVYLNNVVDGC------VARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGN 79 (274)
Q Consensus 7 ~~~~i~~~~~-~TPl~~~~~l~~~~------g~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN 79 (274)
....+..++| +|||+++++|++.+ |.+||+|+|++|||||||+|.+...+..|++.|+ ...|+++|+||
T Consensus 55 ~~~~l~~~vGr~TPL~~~~~Ls~~~g~~~~~g~~IylK~E~lnptGS~K~R~a~~~~l~A~~~g~----~~vIaesgaGN 130 (410)
T PLN02618 55 LAGILKDYVGRETPLYFAERLTEHYKRADGEGPEIYLKREDLNHTGAHKINNAVAQALLAKRLGK----KRIIAETGAGQ 130 (410)
T ss_pred HHHHHHHhcCCCCceeEhhhHHHHhccccCCCCEEEEEeCCCCCccchHHHHHHHHHHHHHHcCC----CEEEEEcCcHH
Confidence 3456778886 89999999999876 4899999999999999999999999999988885 44344567999
Q ss_pred HHHHHHHHHHHcCCeEEEEeCCCC---CHHHHHHHHHCCCEEEEeCC-CCChhHHHH-HHHHHHHhCCCeEee-CCCC--
Q 024022 80 TGIGLAFIAASRGYKLIIIMPSTY---SIERRIILRALGAEVYLADP-AVGFEGFVK-KGEEILNRTPNGYIL-GQFE-- 151 (274)
Q Consensus 80 ~g~alA~~a~~~g~~~~i~~p~~~---~~~~~~~~~~~Ga~v~~~~~-~~~~~~~~~-~a~~~~~~~~~~~~~-~~~~-- 151 (274)
||+|+|++|+++|++|+||||+.. +..|+.+|+.+||+|+.++. +.+++++.. .+++++++..+.+|+ .+..
T Consensus 131 hG~AlA~aaa~~Gl~~~I~m~~~~~~~~~~nv~~mr~lGA~Vi~v~~g~~~~~dA~~ea~~~~~~~~~~~~yi~gs~~gp 210 (410)
T PLN02618 131 HGVATATVCARFGLECIVYMGAQDMERQALNVFRMRLLGAEVRPVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGP 210 (410)
T ss_pred HHHHHHHHHHHcCCcEEEEEcCCchhhhhhhHHHHHHCCCEEEEEeCCCCCHHHHHHHHHHHHHhccCCCEEEecCcCCC
Confidence 999999999999999999999853 34667799999999999964 356778764 445576653345555 2222
Q ss_pred CC--cchHhhhhchHHHHHHhh----CCCCCEEEEecCCcccHHHHHHHHHhhCCCcEEEEEecCCCc--------cccC
Q 024022 152 NP--ANPEIHYETTGPEIWNDS----GGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESA--------VLNG 217 (274)
Q Consensus 152 ~~--~~~~~g~~t~~~Ei~~q~----~~~~d~iv~~vG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~--------~~~~ 217 (274)
+| ..+..++.+++.||.+|+ +..||+||+|+|+||+++|++.+|+. .|++|||||||.++. ++..
T Consensus 211 ~P~~~~v~~~q~tig~Ei~~Q~~~~~g~~pD~VV~~VGgGg~~~Gi~~~f~~-~~~v~ligVEa~G~~~~~~~~~a~l~~ 289 (410)
T PLN02618 211 HPYPMMVRDFHSVIGKETRRQAMEKWGGKPDVLVACVGGGSNAMGLFHEFID-DEDVRLIGVEAAGFGLDSGKHAATLTK 289 (410)
T ss_pred CCCHHHHHHhhHHHHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHHh-CCCceEEEEEeCCCcccccccccchhc
Confidence 22 223368999999998876 34699999999999999999999965 789999999999972 2222
Q ss_pred CCC--------------------cccccccCCCCCC-cc--cccccccCeEEEeCHHHHHHHHHHHHHHcCCEecccCC
Q 024022 218 GQP--------------------GKHLIQGIGAGVI-PP--VLDVAMLDEVITVSSEEAIETSKLLALKEGLLQRQLLY 273 (274)
Q Consensus 218 ~~~--------------------~~~~~~gl~~~~~-~~--~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~g~s~~ 273 (274)
+++ ..++..||..+.. |. .+....+|+.+.|+|+|+++++++|+++|||++++||+
T Consensus 290 g~~gv~~g~~~~~l~~~~g~~~~~~sia~gl~~pgvgp~~~~l~~~~~~~~v~VtD~Eal~a~~~La~~eGIi~~~sSa 368 (410)
T PLN02618 290 GEVGVLHGAMSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDTGRAEYYSVTDEEALEAFQRLSRLEGIIPALETS 368 (410)
T ss_pred CCcceeccccccccccccCCCCCCcchhhhhcCCCCcHHHHHHHhhcCcEEEEECHHHHHHHHHHHHHHcCceEchhHH
Confidence 222 1123344543221 11 12334788999999999999999999999999999985
No 69
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=100.00 E-value=5.8e-48 Score=345.07 Aligned_cols=251 Identities=19% Similarity=0.166 Sum_probs=203.5
Q ss_pred ccCCCcceecccccCCCCceEEEEeCCCCCC--CchhhHHHHHHHHHHHHcCCCCCCCeEEEEe--CCChHHHHHHHHHH
Q 024022 14 LIGHTPMVYLNNVVDGCVARIAAKLEMMQPC--SSVKDRIAYSMIKDAEDKGLITPGKTVLIEL--TSGNTGIGLAFIAA 89 (274)
Q Consensus 14 ~~~~TPl~~~~~l~~~~g~~l~~K~E~~npt--GS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~--ssGN~g~alA~~a~ 89 (274)
...+|||+++++++...|.+||+|+|++||+ ||||+|++.+++.+++++|. +.||++ |+||||+|+|++|+
T Consensus 4 ~~~~TPl~~~~~l~~~~g~~l~~K~E~l~p~~~gs~K~R~~~~~l~~a~~~g~-----~~vv~~g~ssGN~g~alA~~a~ 78 (311)
T TIGR01275 4 IPWPTPIQYLPRISREIGAEIYIKRDDLTGLGIGGNKIRKLEYLLADALSKGA-----DTVITVGAIQSNHARATALAAK 78 (311)
T ss_pred CCCCCcceechhhhhhcCCeEEEEeccCcCCCCCchhHHHHHHHHHHHHHcCC-----CEEEEcCCchhHHHHHHHHHHH
Confidence 4589999999999888888999999999998 99999999999999999985 458988 66999999999999
Q ss_pred HcCCeEEEEeCCCC-CHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHH----hCC-CeEeeCCCCCCcchHhhhhch
Q 024022 90 SRGYKLIIIMPSTY-SIERRIILRALGAEVYLADPAVGFEGFVKKGEEILN----RTP-NGYILGQFENPANPEIHYETT 163 (274)
Q Consensus 90 ~~g~~~~i~~p~~~-~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~----~~~-~~~~~~~~~~~~~~~~g~~t~ 163 (274)
++|++|+||||.+. +..+..+++.+||+|+.++.. ++++..+.++++++ +.+ ..+++.++.|+.+.+ |+.++
T Consensus 79 ~~G~~~~ivvp~~~~~~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-g~~~~ 156 (311)
T TIGR01275 79 KLGLDAVLVLREKEELNGNLLLDKLMGAETRVYSAE-EYFEIMKYAEELAEELEKEGRKPYVIPVGGSNSLGTL-GYVEA 156 (311)
T ss_pred HhCCceEEEecCCccCCCCHHHHHHcCCEEEEECch-hhhhhHHHHHHHHHHHHhcCCCeEEECCCCCcHHHHH-HHHHH
Confidence 99999999999865 455677789999999999852 24444455555443 221 244567788998885 77889
Q ss_pred HHHHHHhhCC--CCCEEEEecCCcccHHHHHHHHHhhCCCcEEEEEecCCCccccCCC---CcccccccCCCC-CCcccc
Q 024022 164 GPEIWNDSGG--KVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQ---PGKHLIQGIGAG-VIPPVL 237 (274)
Q Consensus 164 ~~Ei~~q~~~--~~d~iv~~vG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~~~~---~~~~~~~gl~~~-~~~~~~ 237 (274)
++||++|+++ +||+||+|+|||||++|+++++|+.+|+++||||||..+....... ..++.+++++.+ ...+..
T Consensus 157 ~~EI~~q~~~~~~~D~vv~~vGtGgt~~Gi~~~lk~~~~~~~vigV~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 236 (311)
T TIGR01275 157 VLEIATQLESEVKFDSIVVAAGSGGTIAGLSLGLSILNEDIRPVGVAVGRFGEDMTDKFVNLVKEIAEGLEVKASEVIPE 236 (311)
T ss_pred HHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCcEEEEEecccHHHHHHHHHHHHHHHHHHhCCCCCCCEEE
Confidence 9999999964 6999999999999999999999999999999999987653211100 122345666654 223445
Q ss_pred cccccCeEEEeCHHHHHHHHHHHHHHcCCEeccc
Q 024022 238 DVAMLDEVITVSSEEAIETSKLLALKEGLLQRQL 271 (274)
Q Consensus 238 ~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~g~s 271 (274)
..++.++.+.|+|+|+++++++|++++|+++||+
T Consensus 237 ~~~~~~~~~~v~d~e~~~~~~~la~~~gi~vep~ 270 (311)
T TIGR01275 237 LDDYSGPGYGKPTSEVAEIVKKVASREGIILDPV 270 (311)
T ss_pred ECCcccCcCCCCCHHHHHHHHHHHHHhCCccCcc
Confidence 5677888999999999999999999999999995
No 70
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=100.00 E-value=6.6e-48 Score=347.20 Aligned_cols=258 Identities=22% Similarity=0.209 Sum_probs=210.0
Q ss_pred HHHHhcccCCCcceecccccCCCCceEEEEeCCCCCC--CchhhHHHHHHHHHHHHcCCCCCCCeEEEEeC--CChHHHH
Q 024022 8 KKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPC--SSVKDRIAYSMIKDAEDKGLITPGKTVLIELT--SGNTGIG 83 (274)
Q Consensus 8 ~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~npt--GS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s--sGN~g~a 83 (274)
.+++...+++|||++++.|++..|.+||+|+|++||+ ||||||++.+++.++++.|. ++||+++ +||||+|
T Consensus 6 ~~~~~~~~~~TPl~~~~~l~~~~g~~i~~K~E~lnp~g~gs~K~R~~~~~l~~a~~~g~-----~~vvt~g~s~gN~g~a 80 (331)
T PRK03910 6 FPRLELAGLPTPLEPLPRLSAALGPDIYIKRDDLTGLALGGNKTRKLEFLLADALAQGA-----DTLITAGAIQSNHARQ 80 (331)
T ss_pred CCCccccCCCCCceEhhhhhHhhCCcEEEEeccCCCCCCCchHHHHHHHHHHHHHHcCC-----CEEEEcCcchhHHHHH
Confidence 4567889999999999999887888999999999997 59999999999999998885 4488774 5999999
Q ss_pred HHHHHHHcCCeEEEEeCCCCCH--------HHHHHHHHCCCEEEEeCCCCChhH-HHHHHHHHHHhCCCeE-eeCCCCCC
Q 024022 84 LAFIAASRGYKLIIIMPSTYSI--------ERRIILRALGAEVYLADPAVGFEG-FVKKGEEILNRTPNGY-ILGQFENP 153 (274)
Q Consensus 84 lA~~a~~~g~~~~i~~p~~~~~--------~~~~~~~~~Ga~v~~~~~~~~~~~-~~~~a~~~~~~~~~~~-~~~~~~~~ 153 (274)
+|++|+.+|++|+||||++++. .++..++.+||+|+.++.+.++.+ +...++++.++.+..+ ++.++.|+
T Consensus 81 lA~~a~~~G~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~Ga~vi~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~ 160 (331)
T PRK03910 81 TAAAAAKLGLKCVLLLENPVPTEAENYLANGNVLLDDLFGAEIHVVPAGTDMDAQLEELAEELRAQGRRPYVIPVGGSNA 160 (331)
T ss_pred HHHHHHHhCCcEEEEEcCCCCcccccccCCCcHHHHHHcCCEEEEeCccchHHHHHHHHHHHHHHcCCceEEECCCCCCc
Confidence 9999999999999999998775 456899999999999986533323 3445666665543233 45677899
Q ss_pred cchHhhhhchHHHHHHhhCC---CCCEEEEecCCcccHHHHHHHHHhhCCCcEEEEEecCCCccccCCCC---ccccccc
Q 024022 154 ANPEIHYETTGPEIWNDSGG---KVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQP---GKHLIQG 227 (274)
Q Consensus 154 ~~~~~g~~t~~~Ei~~q~~~---~~d~iv~~vG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~~~~~---~~~~~~g 227 (274)
.+.+ ||.+++.||++|+++ .||+||+|+||||+++|++.++++.+|+++||||||++++.+..... ..+..++
T Consensus 161 ~~~~-g~~~~~~Ei~~q~~~~~~~~d~vv~~vGtGgt~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~~~~~~~~~~~a~~ 239 (331)
T PRK03910 161 LGAL-GYVACALEIAQQLAEGGVDFDAVVVASGSGGTHAGLAAGLAALGPDIPVIGVTVSRSAAEQEPKVAKLAQATAEL 239 (331)
T ss_pred hhHH-HHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHH
Confidence 9985 889999999999963 69999999999999999999999999999999999998865432111 1223344
Q ss_pred CCCC--CC--cccccccccCeEEEeCHHHHHHHHHHHHHHcCCEeccc
Q 024022 228 IGAG--VI--PPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLQRQL 271 (274)
Q Consensus 228 l~~~--~~--~~~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~g~s 271 (274)
++.+ .. ...+.++++|+++.|+|+|+++++++|++++||++||+
T Consensus 240 ~g~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~ep~ 287 (331)
T PRK03910 240 LGLPTEIPRADIRLWDDYVGPGYGVPTDEMLEAVKLLARTEGILLDPV 287 (331)
T ss_pred cCCCccCCcccEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCccccc
Confidence 4433 11 22456788999999999999999999999999999996
No 71
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=100.00 E-value=1.5e-47 Score=350.61 Aligned_cols=252 Identities=15% Similarity=0.081 Sum_probs=207.3
Q ss_pred cccCCCcceecccccCCCCc-eEEEEeCC-------CCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHH
Q 024022 13 ELIGHTPMVYLNNVVDGCVA-RIAAKLEM-------MQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGL 84 (274)
Q Consensus 13 ~~~~~TPl~~~~~l~~~~g~-~l~~K~E~-------~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~al 84 (274)
...+.|||+++++|++.+|. +||+|+|. +|||||||||++.+++.++.+.|. +.|+++|+||||+|+
T Consensus 58 ~~~g~tpl~~~~~L~~~lG~~~v~~K~e~~~~K~E~~npTGSFKdRga~~~i~~a~~~g~-----~~Vv~aSsGN~g~al 132 (398)
T TIGR03844 58 RTRGGPVTYKSEGLARELGLSDLYITFSGYWPERGAFMRTCSFKELEALPTMQRLKERGG-----KTLVVASAGNTGRAF 132 (398)
T ss_pred CCCCCCceeehHHHHHHhCCCeEEEEecCcccchhccCCccccHHHHHHHHHHHHHHcCC-----CEEEEECCCHHHHHH
Confidence 35668999999999988997 99995555 899999999999999999999883 459999999999999
Q ss_pred HHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhchH
Q 024022 85 AFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTG 164 (274)
Q Consensus 85 A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~ 164 (274)
|++|+++|++|+||||++++..+...++.+|++|+.+++ +|+++.+.+++++++. +++..++++||..+ .|++|++
T Consensus 133 A~~aa~~Gi~~~I~vP~~~~~~~~~~~~~~ga~vv~v~g--~~d~a~~~a~~~a~~~-g~~~~~~~~~p~~i-eG~~Ti~ 208 (398)
T TIGR03844 133 AEVSAITGQPVILVVPKSSADRLWTTEPASSVLLVTVDG--DYTDAIALADRIATLP-GFVPEGGARNVARR-DGMGTVM 208 (398)
T ss_pred HHHHHHcCCcEEEEECCChHHHHHHHhhCCcEEEEECCC--CHHHHHHHHHHHHHhC-CccccCCCCCHHHH-hhHHHHH
Confidence 999999999999999998654334445789999999985 4899999999998875 65545566788888 5999999
Q ss_pred HHHHHhhCCCCCEEEEecCCcccHHHHHHHHHhhC-------CCcEEEEEecCCCcccc----CCCCc------------
Q 024022 165 PEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKN-------PNIKVYGIEPSESAVLN----GGQPG------------ 221 (274)
Q Consensus 165 ~Ei~~q~~~~~d~iv~~vG~Gg~~~Gi~~~~k~~~-------~~~~vigve~~~~~~~~----~~~~~------------ 221 (274)
+||++|++..||+||+|+|+|.++.|++.+++++. ..+++++||+++++++. .+...
T Consensus 209 ~Ei~eql~~~PD~VvvPvG~G~~~~~~~~~~~~l~~~g~i~~~~P~l~~VQ~eg~~p~~~a~~~g~~~~~~~~~~~~~~~ 288 (398)
T TIGR03844 209 LDAAVTIGSLPDHYFQAVGSGTGGIAAWEAAMRLIEDGRFGSKLPRLHLAQNLPFVPMVNAWQEGRREIIPESDMPDAEN 288 (398)
T ss_pred HHHHHHcCCCCCEEEEecCCCHHHHHHHHHHHHHHHcCCccCCCCCEEEEEcCCchHHHHHHHcCCCccccccCCccccc
Confidence 99999997449999999999988999999988742 34799999999998653 23211
Q ss_pred ---ccccccCCCCCCcc-------cccccccCeEEEeCHHHHHHHHHHHHHHcCCEecccCC
Q 024022 222 ---KHLIQGIGAGVIPP-------VLDVAMLDEVITVSSEEAIETSKLLALKEGLLQRQLLY 273 (274)
Q Consensus 222 ---~~~~~gl~~~~~~~-------~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~g~s~~ 273 (274)
.+.+++|..+..+. ...++..++++.|+|+|+.+|+++|++++|++++|||+
T Consensus 289 ~~~~t~a~~l~i~~p~~~~~~~~l~air~~~g~~v~Vsd~eI~~A~~~l~~~~gi~vEpa~A 350 (398)
T TIGR03844 289 SIEEVYSDVLTNRTPPYGVTGGVFDALIATGGQMYGVSNKEAVSAGKLFEESEGIDILPAAA 350 (398)
T ss_pred cccceecceeeeCCCCcchHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhhCCccccccHH
Confidence 23456664432221 23457788999999999999999999999999999985
No 72
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=100.00 E-value=1.8e-47 Score=345.14 Aligned_cols=260 Identities=20% Similarity=0.203 Sum_probs=209.4
Q ss_pred hhHHHHhcccCCCcceecccccCCCC--ceEEEEeCCCCCC---CchhhHHHHHHHHHHHHcCCCCCCCeEEEEe--CCC
Q 024022 6 EIKKDVTELIGHTPMVYLNNVVDGCV--ARIAAKLEMMQPC---SSVKDRIAYSMIKDAEDKGLITPGKTVLIEL--TSG 78 (274)
Q Consensus 6 ~~~~~i~~~~~~TPl~~~~~l~~~~g--~~l~~K~E~~npt---GS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~--ssG 78 (274)
.-++++.+.+++|||++++++++.+| .+||+|+|++||+ ||||||.+.+++.+++++|. .+|+++ |+|
T Consensus 4 ~~~~~~~l~~g~TPL~~~~~l~~~~g~~~~v~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~-----~~vvs~G~s~G 78 (337)
T PRK12390 4 QKFPRYPLTFGPTPIHPLKRLSAHLGGKVELYAKREDCNSGLAFGGNKTRKLEYLVPDALAQGA-----DTLVSIGGVQS 78 (337)
T ss_pred CCCCccccCCCCCcceeHHHHHHHhCCCCeEEEEeCCCCCCCCccchhHHHHHHHHHHHHHcCC-----CEEEEeCCCcc
Confidence 34567888999999999999888777 6999999999987 78899999999999999996 448887 889
Q ss_pred hHHHHHHHHHHHcCCeEEEEeCCCCC--------HHHHHHHHHCCCEEEEeCCCC--ChhHHHHHHHHHHHhCCCeEe-e
Q 024022 79 NTGIGLAFIAASRGYKLIIIMPSTYS--------IERRIILRALGAEVYLADPAV--GFEGFVKKGEEILNRTPNGYI-L 147 (274)
Q Consensus 79 N~g~alA~~a~~~g~~~~i~~p~~~~--------~~~~~~~~~~Ga~v~~~~~~~--~~~~~~~~a~~~~~~~~~~~~-~ 147 (274)
|||+|+|++|+++|++|+||++..++ ..|+..++.+||+|+.++.+. .+.++++.+.+..++..+..| +
T Consensus 79 N~g~alA~aa~~~G~~~~iv~~~~~p~~~~~~~~~~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (337)
T PRK12390 79 NHTRQVAAVAAHLGMKCVLVQENWVNYEDAVYDRVGNILLSRIMGADVRLVPDGFDIGIRKSWEDALEDVRAAGGKPYAI 158 (337)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCCCCCccchhhccccHHHHHHCCCEEEEeCCCcchhHHHHHHHHHHHHHhCCCceEEe
Confidence 99999999999999999999876544 236778999999999998641 233666677776666334334 5
Q ss_pred CCCCC--CcchHhhhhchHHHHHHh---hCCCCCEEEEecCCcccHHHHHHHHHhhCCCcEEEEEecCCCccccCCCC--
Q 024022 148 GQFEN--PANPEIHYETTGPEIWND---SGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQP-- 220 (274)
Q Consensus 148 ~~~~~--~~~~~~g~~t~~~Ei~~q---~~~~~d~iv~~vG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~~~~~-- 220 (274)
+.+.+ +... .||.++++||++| ++++||+||+|+|+|||++|++.++|+..|++|||+|||++++.+...+.
T Consensus 159 ~~~~~~~~~~~-~G~~~~a~Ei~~q~~~~~~~~d~vvv~vGtGgtlaGi~~~~k~~~~~~rvigV~~~~~~~~~~~~~~~ 237 (337)
T PRK12390 159 PAGASDHPLGG-LGFVGFAEEVRAQEAELGFKFDYIVVCSVTGSTQAGMVVGFAADGRARRVIGIDASAKPEQTRAQVLR 237 (337)
T ss_pred CCcCCCCCccc-HHHHHHHHHHHHHHHhcCCCCCEEEEecCcchhHHHHHHHHHhcCCCceEEEEEecCchHHHHHHHHH
Confidence 44433 4444 4899999999998 44479999999999999999999999999999999999999876543211
Q ss_pred -cccccccCCCC--CCcc--cccccccCeEEEeCHHHHHHHHHHHHHHcCCEeccc
Q 024022 221 -GKHLIQGIGAG--VIPP--VLDVAMLDEVITVSSEEAIETSKLLALKEGLLQRQL 271 (274)
Q Consensus 221 -~~~~~~gl~~~--~~~~--~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~g~s 271 (274)
.++.+++++.+ ..+. .+..+++|+.+.|+|+|+++++++|++++||++||+
T Consensus 238 ~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~vsd~e~~~a~~~la~~~gi~~ep~ 293 (337)
T PRK12390 238 IARNTAELVELGRDITEDDVVLDERYAGPEYGLPNEGTLEAIRLCARLEGMLTDPV 293 (337)
T ss_pred HHHHHHHHhCCCCCCChhhEEEecccccCCCCCCCHHHHHHHHHHHHhcCcccccc
Confidence 23334455443 2222 356678999999999999999999999999999997
No 73
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=1.9e-46 Score=359.53 Aligned_cols=260 Identities=20% Similarity=0.231 Sum_probs=204.6
Q ss_pred HHHhcccC-CCcceecccccCC----CC--ceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHH
Q 024022 9 KDVTELIG-HTPMVYLNNVVDG----CV--ARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTG 81 (274)
Q Consensus 9 ~~i~~~~~-~TPl~~~~~l~~~----~g--~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g 81 (274)
..+..++| +|||+++++|++. +| .+||+|+|++|||||||+|++.+++..+++.|+ .+.|+++|+||||
T Consensus 317 ~~~~~~iGrpTPL~~~~~Ls~~l~~~~G~g~~IylK~E~lNpTGS~KdR~Al~~i~~A~~~G~----~~~IvetssGNhG 392 (695)
T PRK13802 317 TLNQRYVGRPSPLTEAPRFAERVKEKTGLDARVFLKREDLNHTGAHKINNALGQALLVKRMGK----TRVIAETGAGQHG 392 (695)
T ss_pred HHHHhcCCCCCceeEchhhhhhhHhhcCCCceEEEEEccCCCcCCcHHHHHHHHHHHHHHcCC----CCEEEEECcHHHH
Confidence 34567788 9999999998753 44 799999999999999999999999999999997 4558899999999
Q ss_pred HHHHHHHHHcCCeEEEEeCCC---CCHHHHHHHHHCCCEEEEeCCC-CChhHHHHHH-HHHHHhCC-CeEeeCCCCCC--
Q 024022 82 IGLAFIAASRGYKLIIIMPST---YSIERRIILRALGAEVYLADPA-VGFEGFVKKG-EEILNRTP-NGYILGQFENP-- 153 (274)
Q Consensus 82 ~alA~~a~~~g~~~~i~~p~~---~~~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a-~~~~~~~~-~~~~~~~~~~~-- 153 (274)
+|+|++|+++|++|+||||+. .+..|+.+|+.+||+|+.++.. .+++++.+.+ +++.++.+ ..|+++++.|+
T Consensus 393 ~AlA~aaA~~Gl~c~Ivmp~~~~~~~~~nv~~mr~lGAeVi~v~~g~~~l~~Ai~ea~~~~~~~~~~~~y~i~~~~g~~P 472 (695)
T PRK13802 393 VATATVCAMLGLKCRIYMGQIDARRQALNVARMRMLGAEVVEVTLGDRILKDAINEALRDWVTNVKDTHYLLGTVAGPHP 472 (695)
T ss_pred HHHHHHHHHcCCCEEEEEeCCcccccHHHHHHHHHcCCEEEEECCCCCcHHHHHHHHHHHHHHhcCCceEeecccCCCCC
Confidence 999999999999999999985 3678999999999999999843 3567776555 55665533 45778888654
Q ss_pred --cchHhhhhchHHHHHHhhCC-----CCCEEEEecCCcccHHHHHHHHHhhCCCcEEEEEecCCCccccC---------
Q 024022 154 --ANPEIHYETTGPEIWNDSGG-----KVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNG--------- 217 (274)
Q Consensus 154 --~~~~~g~~t~~~Ei~~q~~~-----~~d~iv~~vG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~~--------- 217 (274)
.++..||.++|.||++|+.. .||+||+|+|+||+++|++.+|+. .|++|||||||.++....+
T Consensus 473 ~p~~v~agq~tiG~EI~eQ~~~~~g~~~pD~VVa~VGgGg~~~Gi~~~f~~-~~~vkligVE~~g~g~~~g~h~~~~~~g 551 (695)
T PRK13802 473 FPAMVRDFQKIIGEEAKQQLQDWYGIDHPDAICACVGGGSNAIGVMNAFLD-DERVNLYGYEAGGNGPESGKHAIRFAPG 551 (695)
T ss_pred cHHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEEcCCchHHHHHHHHHHHh-CCCceEEEEEecCCCccccchhhhhhhc
Confidence 33557999999999999952 699999999999999999999966 6899999999998743221
Q ss_pred -CCC--------------------cccccccCCCCCC-cccccccccCeE--EEeCHHHHHHHHHHHHHHcCCEecccCC
Q 024022 218 -GQP--------------------GKHLIQGIGAGVI-PPVLDVAMLDEV--ITVSSEEAIETSKLLALKEGLLQRQLLY 273 (274)
Q Consensus 218 -~~~--------------------~~~~~~gl~~~~~-~~~~~~~~~d~~--v~v~d~e~~~a~~~l~~~eGi~~g~s~~ 273 (274)
+.+ ..++..||..+-+ |..-....++.+ +.|+|+|+++++++|++.|||++++||+
T Consensus 552 ~g~~g~~~g~~~~~~~~~~g~~~~~~sis~gLdy~gvgp~~~~l~~~~rv~~~~vtD~eal~a~~~La~~EGIipa~eS~ 631 (695)
T PRK13802 552 TGELGMFQGAKSYLLENDEGQTLDTYSISAGLDYASVGPEHAWLKDIGRVNYSWATDEEAMNAFKDLCETEGIIPAIESS 631 (695)
T ss_pred cCCccccccceeecccCCCCCccCccccccccCCCCCCchhHHHHhcCCeEEEEECHHHHHHHHHHHHHHcCccccchHH
Confidence 110 0011223332111 111122334544 8999999999999999999999999985
No 74
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....
Probab=100.00 E-value=3.5e-47 Score=338.91 Aligned_cols=251 Identities=37% Similarity=0.523 Sum_probs=203.4
Q ss_pred HhcccCCCcceecc--cccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHH
Q 024022 11 VTELIGHTPMVYLN--NVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIA 88 (274)
Q Consensus 11 i~~~~~~TPl~~~~--~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a 88 (274)
|++++++|||++++ .+....+.+||+|+|++|||||||||++.+++.++++++. ++|+++|+||||.|+|++|
T Consensus 1 i~~~~~~TPl~~~~~~~~~~~~~~~i~~K~E~~~ptgs~K~R~a~~~l~~a~~~~~-----~~vv~assGN~g~a~A~~a 75 (306)
T PF00291_consen 1 ISLGIGPTPLVRLPSRLLSELGGANIYLKREDLNPTGSFKDRGAYYLLSRAKEKGG-----RTVVGASSGNHGRALAYAA 75 (306)
T ss_dssp GGGGSSSS-EEEEHEHHHHHCTTSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTT-----SEEEEESSSHHHHHHHHHH
T ss_pred CcCCCcCCCEEECccccchhccCCeEEEEECCCCCcCCcccccchhhhhhcccccc-----ceeeeeccCCceehhhhhh
Confidence 56789999999975 4455567899999999999999999999999999998864 4599999999999999999
Q ss_pred HHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHh-------CCCeEeeCCCCCCcchHhhhh
Q 024022 89 ASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNR-------TPNGYILGQFENPANPEIHYE 161 (274)
Q Consensus 89 ~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~-------~~~~~~~~~~~~~~~~~~g~~ 161 (274)
+++|++|++|+|+++++.|+++++.+|++|+.++.+ +++..+.+.+++++ .++. ++|++|+. ...||.
T Consensus 76 ~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~g~~ 150 (306)
T PF00291_consen 76 ARLGLKCTIVVPEDVSPEKLKQMRALGAEVILVPGD--VEGAFDDAQELAKERAELLSPFNGE--LNQYNNPN-VIAGYA 150 (306)
T ss_dssp HHHTCEEEEEEETTSHHHHHHHHHHTTCEEEEESST--HHHHHHHHHHHHHHHHHHHHHSTTE--ESTTTSHH-HHHHHH
T ss_pred hhccccceeeeccccccccccceeeecceEEEcccc--ccccccccccccccccccccccccc--cCcccchh-hhhhhh
Confidence 999999999999999999999999999999999853 44444444444432 1122 66774444 447999
Q ss_pred chHHHHHHhhCCCCCE--EEEecCCcccHHHHHHHHHh--hCCCcEEEEEecCCCcccc----CCCC----cccccccCC
Q 024022 162 TTGPEIWNDSGGKVDA--FIAGIGTGGTVTGAGRFLKE--KNPNIKVYGIEPSESAVLN----GGQP----GKHLIQGIG 229 (274)
Q Consensus 162 t~~~Ei~~q~~~~~d~--iv~~vG~Gg~~~Gi~~~~k~--~~~~~~vigve~~~~~~~~----~~~~----~~~~~~gl~ 229 (274)
++++||++|++ .||. ||+|+|+||+++|++.+++. . |+++||+|++.+++++. .+.. ..+.+.||+
T Consensus 151 ~~~~Ei~~q~~-~~d~d~vvv~~GtGg~~~Gi~~~~~~~~~-~~~~vigv~~~~~~~~~~~~~~g~~~~~~~~~~~~gl~ 228 (306)
T PF00291_consen 151 TIGLEIYEQLG-KPDPDYVVVPVGTGGTAAGIAAGLKELIL-PPVRVIGVEPEGSDPLYRSFKAGKPIRLPGESTIAGLG 228 (306)
T ss_dssp HHHHHHHHHHT-TESESEEEEEESSSHHHHHHHHHHHHHCH-TTSEEEEEEETTGHHHHHHHHHTSCEHSSCHHSSTGGT
T ss_pred hcchhcccccc-cccceEEEecCCchhHHHHHHhhhhhhhc-ccccceeeeccCCccccccccccccccccceeeeeccc
Confidence 99999999997 6665 99999999999999999999 7 89999999999987653 3332 124556887
Q ss_pred CCC-Ccc----cccccccCeEEEeCHHHHHHHHHHHHHHcCCEecccCC
Q 024022 230 AGV-IPP----VLDVAMLDEVITVSSEEAIETSKLLALKEGLLQRQLLY 273 (274)
Q Consensus 230 ~~~-~~~----~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~g~s~~ 273 (274)
.+. .+. .+.++++++++.|+|+|+.+++++|+++||+++|||++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~~a 277 (306)
T PF00291_consen 229 VPMPFPGELDLELIDEYVGDVVGVSDEEALEAIRELAEREGILVEPSSA 277 (306)
T ss_dssp SSSCTTTTHHHHHHHHETEEEEEEEHHHHHHHHHHHHHHHSB-B-HHHH
T ss_pred CCccchhhhhhhhhhhccccccccchHHHHHHHHHHHHHcCcEEcHHHH
Confidence 765 122 24456778889999999999999999999999999874
No 75
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=100.00 E-value=4.1e-47 Score=338.86 Aligned_cols=248 Identities=23% Similarity=0.251 Sum_probs=199.7
Q ss_pred CcceecccccCCC--CceEEEEeCCCCCC---CchhhHHHHHHHHHHHHcCCCCCCCeEEEEe--CCChHHHHHHHHHHH
Q 024022 18 TPMVYLNNVVDGC--VARIAAKLEMMQPC---SSVKDRIAYSMIKDAEDKGLITPGKTVLIEL--TSGNTGIGLAFIAAS 90 (274)
Q Consensus 18 TPl~~~~~l~~~~--g~~l~~K~E~~npt---GS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~--ssGN~g~alA~~a~~ 90 (274)
|||+++++|++.+ +.+||+|+|++||+ ||||||++.+++.+++++|. +.||++ |+||||+|+|++|++
T Consensus 1 TPl~~~~~l~~~~g~~~~l~~K~E~~np~gsfgs~K~R~~~~~l~~a~~~g~-----~~vv~~ggs~GN~g~alA~~a~~ 75 (307)
T cd06449 1 TPIQYLPRLSEHLGGKVEIYAKRDDCNSGLAFGGNKIRKLEYLLPDALAKGA-----DTLVTVGGIQSNHTRQVAAVAAK 75 (307)
T ss_pred CcccchhHHHHhhCCCCcEEEecccccCCCCccchHHHHHHHHHHHHHHcCC-----CEEEECCCchhHHHHHHHHHHHH
Confidence 8999999998877 57999999999999 56799999999999999885 458888 689999999999999
Q ss_pred cCCeEEEEeCCCCC--------HHHHHHHHHCCCEEEEeCCCC--ChhHHHHHHHH-HHHhCCCeEe-eCCC-CCCcchH
Q 024022 91 RGYKLIIIMPSTYS--------IERRIILRALGAEVYLADPAV--GFEGFVKKGEE-ILNRTPNGYI-LGQF-ENPANPE 157 (274)
Q Consensus 91 ~g~~~~i~~p~~~~--------~~~~~~~~~~Ga~v~~~~~~~--~~~~~~~~a~~-~~~~~~~~~~-~~~~-~~~~~~~ 157 (274)
+|++|+||||.+.+ ..|+++++.+||+|+.++.+. ...++.+.+.+ +.++.+..++ .+++ +|+.+++
T Consensus 76 ~G~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (307)
T cd06449 76 LGLKCVLVQENWVPYSDAVYDRVGNILLSRIMGADVRLVSAGFDIGIRKSFEEAAEEVEAKGGKPYVIPAGGSEHPLGGL 155 (307)
T ss_pred cCCeEEEEecCCCCcccccccccccHHHHHHCCCEEEEECCcchhhHHHHHHHHHHHHHHcCCceEEecCCCCCCcccHH
Confidence 99999999999876 468999999999999998642 11223333333 3333223344 4555 4999985
Q ss_pred hhhhchHHHHHHhhCC---CCCEEEEecCCcccHHHHHHHHHhhCCCcEEEEEecCCCccccCCCC---cccccccCC--
Q 024022 158 IHYETTGPEIWNDSGG---KVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQP---GKHLIQGIG-- 229 (274)
Q Consensus 158 ~g~~t~~~Ei~~q~~~---~~d~iv~~vG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~~~~~---~~~~~~gl~-- 229 (274)
||.+++.||++|+++ .||+||+|+||||+++|++.++|+.++++|||+|||.+++.+..... ....+.+++
T Consensus 156 -G~~t~~~Ei~~q~~~~~~~~d~vv~~~GtGgt~~G~~~~~~~~~~~~~ii~V~~~~~~~~~~~~~~~~~~~~~~~~g~~ 234 (307)
T cd06449 156 -GYVGFVLEIAQQEEELGFKFDSIVVCSVTGSTHAGLSVGLAALGRQRRVIGIDASAKPEKTKAQVLRIAQAKLAEEGLE 234 (307)
T ss_pred -HHHHHHHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHhcCCCCeEEEEEecCchHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999964 69999999999999999999999999999999999999876532111 011222233
Q ss_pred CCCCcccccccccCeEEEeCHHHHHHHHHHHHHHcCCEeccc
Q 024022 230 AGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLQRQL 271 (274)
Q Consensus 230 ~~~~~~~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~g~s 271 (274)
.+..+..+..+++|+++.|+|+|+++++++|++++||++||.
T Consensus 235 ~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~la~~~Gi~~ep~ 276 (307)
T cd06449 235 VKEEDVVLDDDYAAPEYGIPNDETIEAIKLCARLEGIITDPV 276 (307)
T ss_pred CCcccEEEecCcccCCCCCCCHHHHHHHHHHHHHhCCccccc
Confidence 223455667789999999999999999999999999999994
No 76
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=100.00 E-value=7e-47 Score=341.21 Aligned_cols=259 Identities=21% Similarity=0.216 Sum_probs=210.8
Q ss_pred hHHHHhcccCCCcceecccccCCCCc--eEEEEeCCCCCC---CchhhHHHHHHHHHHHHcCCCCCCCeEEEEe--CCCh
Q 024022 7 IKKDVTELIGHTPMVYLNNVVDGCVA--RIAAKLEMMQPC---SSVKDRIAYSMIKDAEDKGLITPGKTVLIEL--TSGN 79 (274)
Q Consensus 7 ~~~~i~~~~~~TPl~~~~~l~~~~g~--~l~~K~E~~npt---GS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~--ssGN 79 (274)
-.+++.+.+++|||++++++++.+|. +||+|+|++||+ ||||||++.+++.+++++|+ ++|+++ |+||
T Consensus 4 ~~~~~~l~~g~TPl~~~~~l~~~~g~~~~l~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~-----~~vvs~ggs~gN 78 (337)
T TIGR01274 4 RFPRYPLTFGPSPIHPLPRLSQHLGGKVTLYAKREDCNSGLAFGGNKTRKLEYLIPDAQAQGC-----TTLVSIGGIQSN 78 (337)
T ss_pred cCCccccCCCCCCceEhHhhHHhcCCCceEEEEccCCcCCcCccchHHHHHHHHHHHHHHcCC-----CEEEECCCCcch
Confidence 35678899999999999999988764 999999999986 77899999999999999996 448877 7799
Q ss_pred HHHHHHHHHHHcCCeEEEEeCCCCC--------HHHHHHHHHCCCEEEEeCCCC--ChhHHHHHHHHHHHhC-CCeEeeC
Q 024022 80 TGIGLAFIAASRGYKLIIIMPSTYS--------IERRIILRALGAEVYLADPAV--GFEGFVKKGEEILNRT-PNGYILG 148 (274)
Q Consensus 80 ~g~alA~~a~~~g~~~~i~~p~~~~--------~~~~~~~~~~Ga~v~~~~~~~--~~~~~~~~a~~~~~~~-~~~~~~~ 148 (274)
||+|+|++|+++|++|+||||+.++ ..|+.+++.+||+|+.++... ...+.+..+.+..++. +..++++
T Consensus 79 ~g~alA~~a~~~Gl~~~iv~~~~~~~~~~~~~~~~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~i~ 158 (337)
T TIGR01274 79 QTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQLSRIMGADVRLDPDGFDIGHRNSWERALEEVRGAGGKPYPIP 158 (337)
T ss_pred HHHHHHHHHHHcCCcEEEEeccCCCccccchhccchHHHHHHcCCEEEEeCCcccccchHHHHHHHHHHHhcCCceEEeC
Confidence 9999999999999999999998543 579999999999999998531 1235565666655554 2346655
Q ss_pred CCC--CCcchHhhhhchHHHHHHhh---CCCCCEEEEecCCcccHHHHHHHHHhhCCCcEEEEEecCCCccccCCC---C
Q 024022 149 QFE--NPANPEIHYETTGPEIWNDS---GGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQ---P 220 (274)
Q Consensus 149 ~~~--~~~~~~~g~~t~~~Ei~~q~---~~~~d~iv~~vG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~~~~---~ 220 (274)
.+. ++... .|+.++++||++|+ +.+||+||+|+|+||+++|++.+++...+++|||+|||++++++.... .
T Consensus 159 ~~~~~~~~~~-~G~~~~~~Ei~eq~~~~~~~~D~vvv~vGtGgt~aGl~~~~~~~~~~~~vigV~~~~~~~~~~~~~~~~ 237 (337)
T TIGR01274 159 AGCSDHPLGG-LGFVGFAFEVREQEGELGFKFDYVVVCSVTGSTQAGMVAGFAADGRKDRVIGIDASATPEQTRAQILRI 237 (337)
T ss_pred CCCCCCccch-hHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHhHHHHHHHHHHhCCCCeEEEEEecCCHHHHHHHHHHH
Confidence 553 45666 48999999999995 347999999999999999999999999999999999999997653221 1
Q ss_pred cccccccCCCCC--Cc--ccccccccCeEEEeCHHHHHHHHHHHHHHcCCEeccc
Q 024022 221 GKHLIQGIGAGV--IP--PVLDVAMLDEVITVSSEEAIETSKLLALKEGLLQRQL 271 (274)
Q Consensus 221 ~~~~~~gl~~~~--~~--~~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~g~s 271 (274)
..+.+++++.+. .+ +.+..+++|+.|.|+|+|+++++++|+++||+++||+
T Consensus 238 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~la~~eGi~~ep~ 292 (337)
T TIGR01274 238 ARNTAEKIGLERDITEDDVVLDTRFAYPEYGVPNEGTLEAIRLCAKMEGVLTDPV 292 (337)
T ss_pred HHHHHHHhCCCCCcCccceEEeccccCCCcCCCCHHHHHHHHHHHHhcCCccCcc
Confidence 234445555432 11 3566678899999999999999999999999999996
No 77
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=100.00 E-value=1.7e-45 Score=331.16 Aligned_cols=260 Identities=18% Similarity=0.204 Sum_probs=202.5
Q ss_pred hhhHHHHhcccCCCcceecccccCCCCceEEEEeCCCCCC--CchhhHHHHHHHHHHHHcCCCCCCCeEEE--EeCCChH
Q 024022 5 CEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPC--SSVKDRIAYSMIKDAEDKGLITPGKTVLI--ELTSGNT 80 (274)
Q Consensus 5 ~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~npt--GS~K~R~a~~~~~~a~~~g~~~~g~~~vv--~~ssGN~ 80 (274)
+..++++.+..++|||++++++++..|.+||+|+|++||+ ||||+|++.+++.++.++|. .+ |+ ++|+|||
T Consensus 9 ~~~~~~~~l~~~~TPl~~~~~l~~~~g~~v~~K~E~l~~~~~gg~K~R~~~~~l~~a~~~G~----~~-vv~~~~ssGN~ 83 (329)
T PRK14045 9 LSKFPRVELIPWETPIQYLPNISRELGADVYVKRDDLTGLGIGGNKIRKLEYLLGDALSRGA----DV-VITVGAVHSNH 83 (329)
T ss_pred hhcCCCcccCCCCCCcccchhhHHHhCCeEEEEcccccCCCCCcchHHHHHhHHHHHHHcCC----CE-EEEeCccHHHH
Confidence 3445789999999999999999887888999999999997 89999999999999999986 33 66 5799999
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCCCHH-HHHHHHHCCCEEEEeCCCCC---hhHHHHHHHHHHHhCCCeEe-eCCCCCCcc
Q 024022 81 GIGLAFIAASRGYKLIIIMPSTYSIE-RRIILRALGAEVYLADPAVG---FEGFVKKGEEILNRTPNGYI-LGQFENPAN 155 (274)
Q Consensus 81 g~alA~~a~~~g~~~~i~~p~~~~~~-~~~~~~~~Ga~v~~~~~~~~---~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ 155 (274)
|+|+|++|+++|++|++|||.+.+.. +...++.+||+++.++...+ .+.+.+.++++.++.+..+| ..++.|+.+
T Consensus 84 g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~n~~~ 163 (329)
T PRK14045 84 AFVTGLAAKKLGLDAVLVLRGKEELKGNYLLDKIMGIETRVYEAKDSFELMKYAEEVAEELKGEGRKPYIIPPGGASPVG 163 (329)
T ss_pred HHHHHHHHHHcCCeEEEEEeCCCCCCcCHHHHHHCCCEEEEECCCcccchHHHHHHHHHHHHhcCCCEEEECCCCCchhH
Confidence 99999999999999999999865433 56678999999998874322 23455666666655444555 466678888
Q ss_pred hHhhhhchHHHHHHhhC---CCCCEEEEecCCcccHHHHHHHHHhhCCCcEEEEEecCCCccccCCCC-----ccccccc
Q 024022 156 PEIHYETTGPEIWNDSG---GKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQP-----GKHLIQG 227 (274)
Q Consensus 156 ~~~g~~t~~~Ei~~q~~---~~~d~iv~~vG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~~~~~-----~~~~~~g 227 (274)
.+ ||.+.+.||++|++ .++|+||+|+|||||++|++.++|..+|++|||+|+|.+......+.. ....+.|
T Consensus 164 ~~-g~~~~~~EI~~q~~~~~~~~d~vv~~vGtGGt~aGi~~~lk~~~~~~kVigv~~~~~~~~~~~~~~~~~~~~~~~~g 242 (329)
T PRK14045 164 TL-GYVRAVGEIATQVKKLGVRFDSIVVAVGSGGTLAGLSLGLAILNAEWRVVGIAVGSFGEKMKEKVKNLVKKTKELLG 242 (329)
T ss_pred HH-HHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHhC
Confidence 85 66666669999996 369999999999999999999999999999999999976322111110 1122345
Q ss_pred CCCCC-CcccccccccCeEEEeCHHHHHHHHHHHHHHcCCEecc-cC
Q 024022 228 IGAGV-IPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLQRQ-LL 272 (274)
Q Consensus 228 l~~~~-~~~~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~g~-s~ 272 (274)
++... .+...+. .+|++..++ +|+++++++|+++|||++|| ||
T Consensus 243 ~~~~~~~~~~~d~-~~~~y~~~~-~e~~~~~~~la~~eGi~ldpvyt 287 (329)
T PRK14045 243 VKVKVQEPELYDY-SFGEYGKIT-KEVAKLIRSVGTMEGLILDPVYT 287 (329)
T ss_pred CCCCccceEeccc-ccCCCCCCC-HHHHHHHHHHHHhhCCCCccchH
Confidence 54433 2333333 447777777 79999999999999999999 54
No 78
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=1.2e-44 Score=347.48 Aligned_cols=260 Identities=23% Similarity=0.219 Sum_probs=201.7
Q ss_pred HHHhcccC-CCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHH
Q 024022 9 KDVTELIG-HTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFI 87 (274)
Q Consensus 9 ~~i~~~~~-~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~ 87 (274)
..+..+++ +|||+++++|++.+|.+||+|+|++|||||||+|.+...+..|++.|+ .+.++++|+||||+|+|++
T Consensus 262 ~~~~~~~grpTPL~~~~~Ls~~~G~~IylK~E~lnptGS~K~r~al~~~~~a~~~g~----~~vi~e~gsGnhG~A~A~~ 337 (610)
T PRK13803 262 RLLQNYAGRPTPLTEAKRLSDIYGARIYLKREDLNHTGSHKINNALGQALLAKRMGK----TRIIAETGAGQHGVATATA 337 (610)
T ss_pred HHHHHhCCCCCcceeHHHHHHhhCCEEEEEeCCCCCcccHHHHHHHHHHHHHHHcCC----CEEEEecChHHHHHHHHHH
Confidence 33455665 899999999998888999999999999999999999999999998885 4445578999999999999
Q ss_pred HHHcCCeEEEEeCCCC---CHHHHHHHHHCCCEEEEeCCC-CChhHHHHHHHH-HHHhCCCeEeeCCCC---C--CcchH
Q 024022 88 AASRGYKLIIIMPSTY---SIERRIILRALGAEVYLADPA-VGFEGFVKKGEE-ILNRTPNGYILGQFE---N--PANPE 157 (274)
Q Consensus 88 a~~~g~~~~i~~p~~~---~~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~-~~~~~~~~~~~~~~~---~--~~~~~ 157 (274)
|+++|++|+||||+.. +..++.+|+.+||+|+.++.. .++.++.+.+.+ +..+.++.+|+.++. + |.++.
T Consensus 338 aa~~Gl~~~I~m~~~~~~~~~~nv~~m~~~GA~Vi~v~~~~~~~~~a~~~a~~~~~~~~~~~~y~~~~~~g~~p~p~~v~ 417 (610)
T PRK13803 338 CALFGLKCTIFMGEEDIKRQALNVERMKLLGANVIPVLSGSKTLKDAVNEAIRDWVASVPDTHYLIGSAVGPHPYPEMVA 417 (610)
T ss_pred HHHcCCcEEEEEeCCcccchhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEeCCcCCCCCcHHHHH
Confidence 9999999999999864 356788999999999999853 356666554444 434444566764432 2 33443
Q ss_pred hhhhchHHHHHHhhCC----CCCEEEEecCCcccHHHHHHHHHhhCCCcEEEEEecCCCc--------cccCCCC-----
Q 024022 158 IHYETTGPEIWNDSGG----KVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESA--------VLNGGQP----- 220 (274)
Q Consensus 158 ~g~~t~~~Ei~~q~~~----~~d~iv~~vG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~--------~~~~~~~----- 220 (274)
.||.|++.||++|+.. .||+||+|+|+||+++|++.+|+. .|+++||||||.++. ++..+++
T Consensus 418 ~~~~tig~Ei~~Q~~~~~g~~pD~vV~~vGgGg~~~Gi~~~f~~-~~~v~iigVE~~g~~~~~~~~~a~l~~g~~g~~~g 496 (610)
T PRK13803 418 YFQSVIGEEAKEQLKEQTGKLPDAIIACVGGGSNAIGIFYHFLD-DPSVKLIGVEAGGKGVNTGEHAATIKKGRKGVLHG 496 (610)
T ss_pred HHhhHHHHHHHHHHHHhhCCCCCEEEEEeCcCHhHHHHHHHHhh-CCCceEEEEecCCCCcccccccchhhcCCeeeecc
Confidence 5899999999999842 599999999999999999999964 789999999999862 2322222
Q ss_pred ---------------cccccccCCCCCC-ccc--ccccccCeEEEeCHHHHHHHHHHHHHHcCCEecccCC
Q 024022 221 ---------------GKHLIQGIGAGVI-PPV--LDVAMLDEVITVSSEEAIETSKLLALKEGLLQRQLLY 273 (274)
Q Consensus 221 ---------------~~~~~~gl~~~~~-~~~--~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~g~s~~ 273 (274)
..++..||..+.. |.. +.....++++.|+|+|+++++++|++.|||++|+||+
T Consensus 497 ~~~~~~~~~~g~~~~~~sia~gl~~~gvg~~~~~~~~~~~~~~v~Vtd~ea~~a~~~La~~eGi~~~~ssa 567 (610)
T PRK13803 497 SMTYLMQDENGQILEPHSISAGLDYPGIGPMHANLFETGRAIYTSVTDEEALDAFKLLAKLEGIIPALESS 567 (610)
T ss_pred ceeeeecccCCcccCCceeeccCCCCCCCHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHcCCccCcHHH
Confidence 1123345543322 221 2233455899999999999999999999999999985
No 79
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=7.4e-41 Score=303.89 Aligned_cols=254 Identities=24% Similarity=0.227 Sum_probs=217.2
Q ss_pred HHhcccCCCcceecccccCCCCc---eEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHH
Q 024022 10 DVTELIGHTPMVYLNNVVDGCVA---RIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAF 86 (274)
Q Consensus 10 ~i~~~~~~TPl~~~~~l~~~~g~---~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~ 86 (274)
...+..+.||+++.+++...++. ++|+|.|++|||||||||++..++..+.+.|. .+|+++||||+|.|+|+
T Consensus 69 ~~~l~eg~tp~~~~~~~~~~l~~~~~~lyvk~~~~nPT~SFKDrg~~~~~~~~~~~g~-----~~I~~ASSGnTgAs~aa 143 (411)
T COG0498 69 AVSLGEGGTPLYKAPALAAPLGVLNDNLYVKELGHNPTGSFKDRGMTVLVSLAKELGA-----KTILCASSGNTGASAAA 143 (411)
T ss_pred hhhhhhccCccccCcccchhhccCCcceehhhhccCCCcchhhhhHHHHHHHHHHhcC-----CEEEEeCCchHHHHHHH
Confidence 44667889999999888887773 59999999999999999999999999999983 24999999999999999
Q ss_pred HHHHcCCeEEEEeCCC-CCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhchHH
Q 024022 87 IAASRGYKLIIIMPST-YSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGP 165 (274)
Q Consensus 87 ~a~~~g~~~~i~~p~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~ 165 (274)
++.+.|++|+|++|.. ++..|+.+|..+|++++.++++ ||++++.+++++++. ++++....-||.+.+ |+.|+++
T Consensus 144 ya~rag~~v~Vl~P~g~vs~~k~~q~~~~ga~~i~v~G~--fDda~~~vk~~~~~~-~~~~~~nsiNp~rle-gq~t~~f 219 (411)
T COG0498 144 YAARAGLKVFVLYPKGKVSPGKLAQMLTLGAHVIAVDGN--FDDAQELVKEAANRE-GLLSAVNSINPYRLE-GQKTYAF 219 (411)
T ss_pred HhccCCCeEEEEecCCCCCHHHHHHHHhcCCEEEEEcCc--HHHHHHHHHHHHhhC-CceeeccccCHHHhh-hhhhhHh
Confidence 9999999999999996 9999999999999999999965 899999999999865 567777777999884 9999999
Q ss_pred HHHHhhCC-CCCEEEEecCCcccHHHHHHHHHhhCCC------cEEEEEecCCCccccCCC-----CcccccccCCCCCC
Q 024022 166 EIWNDSGG-KVDAFIAGIGTGGTVTGAGRFLKEKNPN------IKVYGIEPSESAVLNGGQ-----PGKHLIQGIGAGVI 233 (274)
Q Consensus 166 Ei~~q~~~-~~d~iv~~vG~Gg~~~Gi~~~~k~~~~~------~~vigve~~~~~~~~~~~-----~~~~~~~gl~~~~~ 233 (274)
||++|+++ .||+|++|+|+||++.|++.++++..|. +++.+||++++.++.... ...+....|..+ .
T Consensus 220 e~~~ql~~~~p~~v~vPvGn~gni~a~~~g~~~~~~~g~i~~~p~~~~vqaeg~~p~~~~~~~~~~~~~T~a~am~I~-~ 298 (411)
T COG0498 220 EIAEQLGWKAPDHVVVPVGNGGNLLAIYKGFKEGLPIGKIDKAPNMNGVQAEGFSPGVYAWKEGRETPETIAPAMDIG-N 298 (411)
T ss_pred HHHHHhCCCCCCeEEEeCCchHHHHHHHHHHHhcccccchhcCchhhhhhHhhccchhhhcccccccccccccccccC-C
Confidence 99999974 6999999999999999999999998754 788999999987654321 223444555544 3
Q ss_pred cccccc------cccCeEEEeCHHHHHHHHHHHHHHcCCEecccCC
Q 024022 234 PPVLDV------AMLDEVITVSSEEAIETSKLLALKEGLLQRQLLY 273 (274)
Q Consensus 234 ~~~~~~------~~~d~~v~v~d~e~~~a~~~l~~~eGi~~g~s~~ 273 (274)
|.++.+ +..+..+.|||+|+.++++++++++|++++|+|+
T Consensus 299 p~n~~r~l~a~~es~g~~~~vsdeEi~~a~~~l~~~eG~~~eP~sA 344 (411)
T COG0498 299 PSNWERALFALRESGGLAVAVSDEEILEAIKLLAEREGILIEPHSA 344 (411)
T ss_pred CCCHHHHHHHHHhcCCceEEeCHHHHHHHHHHHHHhCCcccCccHH
Confidence 544432 2235689999999999999999999999999986
No 80
>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-31 Score=229.20 Aligned_cols=254 Identities=21% Similarity=0.277 Sum_probs=191.3
Q ss_pred Hhccc-CCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHH
Q 024022 11 VTELI-GHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAA 89 (274)
Q Consensus 11 i~~~~-~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~ 89 (274)
+..+. ++|||...++|++.+|.+||+|||++|.||+||...+...+.-|++.|+ ++.|.+...|.||.|.|.+|+
T Consensus 49 l~~Y~GRptpLy~a~~Lt~~~gakiyLKREDL~HtGAHKiNN~lGQ~LLAkrMGK----~riIAETGAGQHGVAtAta~A 124 (396)
T COG0133 49 LKDYAGRPTPLYFAERLTEHLGAKIYLKREDLNHTGAHKINNALGQALLAKRMGK----TRIIAETGAGQHGVATATAAA 124 (396)
T ss_pred HHHhCCCCChhHHHHHHHHhhCceEEEehhhhcccchhhHHHHHHHHHHHHHhCC----ceEEeecCCCcccHHHHHHHH
Confidence 34455 5799999999999999999999999999999999999999999999998 676777788999999999999
Q ss_pred HcCCeEEEEeCCC-C--CHHHHHHHHHCCCEEEEeCC-CCChhHHHHHHHH-HHHhCCCeEeeCCC-C--C--CcchHhh
Q 024022 90 SRGYKLIIIMPST-Y--SIERRIILRALGAEVYLADP-AVGFEGFVKKGEE-ILNRTPNGYILGQF-E--N--PANPEIH 159 (274)
Q Consensus 90 ~~g~~~~i~~p~~-~--~~~~~~~~~~~Ga~v~~~~~-~~~~~~~~~~a~~-~~~~~~~~~~~~~~-~--~--~~~~~~g 159 (274)
++|++|+|||-.+ + ...++.+|+.+||+|+.|.. +.+..++.++|.+ +..+....+|+... . + |..+..-
T Consensus 125 ~fgl~C~iYMGa~Dv~RQ~~NVfRM~LlGA~V~pV~sGs~TLKDA~neAlRdWvtn~~~ThY~iGsa~GPHPyP~iVRdF 204 (396)
T COG0133 125 LFGLECVIYMGAEDVERQALNVFRMRLLGAEVVPVTSGSGTLKDAINEALRDWVTNVEDTHYLIGSAAGPHPYPTIVRDF 204 (396)
T ss_pred HhCCceEEEecchhhhhcccchhhhhhcCceEEEeccCCchHHHHHHHHHHHHHhccccceEEEeeccCCCCchHHHHHH
Confidence 9999999999863 3 33567789999999999964 4577788777755 45554556665322 1 2 2233346
Q ss_pred hhchHHHHHHhh----CCCCCEEEEecCCcccHHHHHHHHHhhCCCcEEEEEecCCCc--------cccCCCCc------
Q 024022 160 YETTGPEIWNDS----GGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESA--------VLNGGQPG------ 221 (274)
Q Consensus 160 ~~t~~~Ei~~q~----~~~~d~iv~~vG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~--------~~~~~~~~------ 221 (274)
+..|+.|..+|+ +.-||+||.|||+|++..|++..|.. .+++++||||+.+.- ++..|+++
T Consensus 205 Q~vIG~E~k~Qile~egrlPD~vvACVGGGSNAiG~F~~Fi~-d~~V~LiGvEaaG~Gi~t~~HaAtl~~G~~GvlhG~~ 283 (396)
T COG0133 205 QSVIGEEAKAQILEKEGRLPDAVVACVGGGSNAIGIFHPFID-DESVRLIGVEAAGKGIETGKHAATLTAGRPGVLHGMK 283 (396)
T ss_pred HHHHhHHHHHHHHHHhCCCCCeEEEeccCCcchhhhcccccC-CCCceEEEeccCcCccCCCccceeecCCCceeeeccc
Confidence 888999998885 33599999999999999999988754 267999999998743 23333321
Q ss_pred --------------ccccccCCCCCC-ccc--ccccccCeEEEeCHHHHHHHHHHHHHHcCCEec
Q 024022 222 --------------KHLIQGIGAGVI-PPV--LDVAMLDEVITVSSEEAIETSKLLALKEGLLQR 269 (274)
Q Consensus 222 --------------~~~~~gl~~~~~-~~~--~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~g 269 (274)
-++-.||..+-+ |.. +...---+.+.|+|+|+++|.+.|.+.|||+--
T Consensus 284 tyllQd~~GQi~e~hSISAGLDYPgVGPeha~l~~~gRa~y~~itD~EAl~af~~L~r~EGIIPA 348 (396)
T COG0133 284 TYLLQDEDGQILESHSISAGLDYPGVGPEHAYLKDIGRAEYVSITDEEALEAFQLLSRLEGIIPA 348 (396)
T ss_pred ceeeEcCCCCEeeeeeeccCCCCCCCChhHHHHHhcCceeEEecChHHHHHHHHHHHHhcCcchh
Confidence 011233432211 221 111122367899999999999999999999843
No 81
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=99.98 E-value=6.2e-32 Score=231.31 Aligned_cols=260 Identities=22% Similarity=0.212 Sum_probs=206.1
Q ss_pred hhhHHHHhcccCCCcceecccccCCCCceEEEEeCCCCC--CCchhhHHHHHHHHHHHHcCCCCCCCeEEEEe--CCChH
Q 024022 5 CEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQP--CSSVKDRIAYSMIKDAEDKGLITPGKTVLIEL--TSGNT 80 (274)
Q Consensus 5 ~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~np--tGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~--ssGN~ 80 (274)
+.-++|+....++|||.+++++++++|.+||+||||+.+ .|.||.|++.+++.+|..+|. +++|++ .++||
T Consensus 3 l~rf~R~~l~~~pTPiq~L~rls~~lg~eiYiKRDD~t~l~~gGNK~RKLefll~eal~~g~-----dTlvT~GgiQSNh 77 (323)
T COG2515 3 LSRFPRMELIFGPTPIQKLPRLSAHLGVEIYIKRDDLTGLAFGGNKIRKLEFLLGEALRKGA-----DTLVTYGGIQSNH 77 (323)
T ss_pred cccCCccccCCCCChhhhHHHHHHhcCeEEEEEcccccccccCccHHHHHHHHHhhhhhcCC-----cEEEEecccchhH
Confidence 456788999999999999999999999999999999965 479999999999999999985 459988 66999
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCC----CHHHHHHHHHCCCEEEEeCCCCCh--hHHHHHHHHHHHhCCCeEee-CC-CCC
Q 024022 81 GIGLAFIAASRGYKLIIIMPSTY----SIERRIILRALGAEVYLADPAVGF--EGFVKKGEEILNRTPNGYIL-GQ-FEN 152 (274)
Q Consensus 81 g~alA~~a~~~g~~~~i~~p~~~----~~~~~~~~~~~Ga~v~~~~~~~~~--~~~~~~a~~~~~~~~~~~~~-~~-~~~ 152 (274)
.+++|++|+++|++|+.++.... -..++...+.+|++++.++...+. +...+..++..++.++..|+ +. ..|
T Consensus 78 ~r~tAavA~~lGl~~v~ile~~~~~y~~ngn~Ll~~l~G~~~~~~~~~~d~~~~~~~~~~~e~~~~~g~kpyvIp~GG~~ 157 (323)
T COG2515 78 VRQTAAVAAKLGLKCVLILENIEANYLLNGNLLLSKLMGAEVRAVDAGTDIGINASAEELAEEVRKQGGKPYVIPEGGSS 157 (323)
T ss_pred HHHHHHHHHhcCCcEEEEEeccccccccccchhhhhhcCceEEEecCCCChhhchhhHHHHHHHHhcCCCCcEeccCCcC
Confidence 99999999999999999998754 122566677899999999976554 34444555555554444343 33 246
Q ss_pred CcchHhhhhchHHHHHHhhC--CCCCEEEEecCCcccHHHHHHHHHhhCCCcEEEEEecCCCccccCCCC---ccccccc
Q 024022 153 PANPEIHYETTGPEIWNDSG--GKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQP---GKHLIQG 227 (274)
Q Consensus 153 ~~~~~~g~~t~~~Ei~~q~~--~~~d~iv~~vG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~~~~~---~~~~~~g 227 (274)
|... .||...+.||.+|.. -++|+||+++|||||.||+..++...+++.+|||+...+++.....+. ..+.++.
T Consensus 158 ~~g~-lGyv~~a~Ei~~Q~~~~~~fD~vVva~gs~gT~AGl~~g~~~~~~~~~ViG~~v~~~~~~~~~qv~~L~~~~a~~ 236 (323)
T COG2515 158 PLGA-LGYVRLALEIAEQAEQLLKFDSVVVAPGSGGTHAGLLVGLAQLGPDVEVIGIDVSADPEKLKEQVLNLAQATAEL 236 (323)
T ss_pred cccc-ccHHHHHHHHHHHHhhccCCCEEEEeCCCcchHHHHHHHhhhccCCCceEEEeecCCHHHHHHHHHHHHHHHHHH
Confidence 6655 599999999999986 479999999999999999999999999999999999887764322111 2233333
Q ss_pred CCCC-CCcccccccccCeEEEeCHHHHHHHHHHHHHHcCCEecc
Q 024022 228 IGAG-VIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLQRQ 270 (274)
Q Consensus 228 l~~~-~~~~~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~g~ 270 (274)
++.. ...+..+.++.-..|.++.+|.+++.+.+++.|||...|
T Consensus 237 ~~~~~~~~v~~~~dy~~~~Yg~p~~e~~e~i~~~~~~eGillDp 280 (323)
T COG2515 237 LGLGSEADVLLSDDYHHPGYGKPNEEDIEAIKLLARLEGILLDP 280 (323)
T ss_pred cCCCCCceEEEEecccCCccCCcCHHHHHHHHHHHHhhCccccc
Confidence 4433 223345667777889999999999999999999999887
No 82
>PRK09225 threonine synthase; Validated
Probab=99.97 E-value=4.7e-30 Score=238.07 Aligned_cols=241 Identities=16% Similarity=0.125 Sum_probs=184.5
Q ss_pred CCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHH---HHHHHHHcCCCCCCCeEEEEeCCChHHHHH-HHHHHHcC
Q 024022 17 HTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYS---MIKDAEDKGLITPGKTVLIELTSGNTGIGL-AFIAASRG 92 (274)
Q Consensus 17 ~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~---~~~~a~~~g~~~~g~~~vv~~ssGN~g~al-A~~a~~~g 92 (274)
.+||.+++ .++|+.--+++||||||||++.. ++.++.+ +. ...|+++||||+|.|+ |.++.+.|
T Consensus 88 ~~pl~~l~-------~~~~~lELfhGPT~sFKD~a~~~l~~~l~~a~~-~~----~~~Il~ATSGdtG~Aa~aaf~~~~g 155 (462)
T PRK09225 88 IAPLVQLD-------DNLYVLELFHGPTLAFKDFALQFLAQLLEYVLK-GE----KITILGATSGDTGSAAAEAFRGKPN 155 (462)
T ss_pred ccceEEeC-------CCceeHhhccCCccchhhhHHHHHHHHHHHHHh-CC----CcEEEEcCCCcHHHHHHHHHhCcCC
Confidence 37777764 26899888899999999999988 8888887 42 4569999999999998 78899999
Q ss_pred CeEEEEeCCC-CCHHHHHHHHHC-CCEEEEeCCCCChhHHHHHHHHHHHhC-----CCeEeeCCCCCCcchHhhhhchHH
Q 024022 93 YKLIIIMPST-YSIERRIILRAL-GAEVYLADPAVGFEGFVKKGEEILNRT-----PNGYILGQFENPANPEIHYETTGP 165 (274)
Q Consensus 93 ~~~~i~~p~~-~~~~~~~~~~~~-Ga~v~~~~~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~~~~~~~~g~~t~~~ 165 (274)
++|+||+|+. ++..+..+|..+ |++|+.+.-+++++++.+.++++..+. .+++-.+.. |+.++ .|+.+.++
T Consensus 156 i~~~V~~P~g~vs~~q~~Qm~t~~g~nv~vi~V~G~fDD~q~~vk~~~~d~~~~~~~~l~saNSi-N~~Ri-~gQ~~yyf 233 (462)
T PRK09225 156 VRVVILYPKGKVSPVQEKQMTTLQGDNIHVVAVEGNFDDCQALVKAAFNDEELKEKLKLSSANSI-NIGRL-LAQIVYYF 233 (462)
T ss_pred CEEEEEEcCCCCCHHHHHHHHhhcCCCeEEEEeCCCHHHHHHHHHHHhhchhhhhcCceEEEecc-CHHHH-HHHHHHHH
Confidence 9999999985 999999999999 998843333345999999988876541 145555554 88888 49999999
Q ss_pred HHHHhhCC---CCCEEEEecCCcccHHHHHHHHHhhCCCcEEEEEecCCCccc----cCCCC-----cccccccCCCCCC
Q 024022 166 EIWNDSGG---KVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVL----NGGQP-----GKHLIQGIGAGVI 233 (274)
Q Consensus 166 Ei~~q~~~---~~d~iv~~vG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~----~~~~~-----~~~~~~gl~~~~~ 233 (274)
|+++|+.+ .||+|+||+|+||++.|.+.+.+...|-+|+|+++..+ +++ ..|.. ..+...+|..+ .
T Consensus 234 ea~~ql~~~~~~p~~~vVPtGnfgni~a~~~Ak~mGlpi~kli~A~n~n-~~l~~~~~~G~y~~~~~~~T~s~amdI~-~ 311 (462)
T PRK09225 234 YAYLQLGIEAGEKVNFSVPSGNFGNILAGYYAKKMGLPIKRLIVATNEN-DVLTRFLKTGVYDPRPTVATLSPAMDIS-V 311 (462)
T ss_pred HHHHHhccccCCCCEEEEECCcHHHHHHHHHHHHcCCCcceEEEEecCC-hHHHHHHHcCCCccCCCCCCcCchhhcC-C
Confidence 99999964 38999999999999999999965556778999998333 332 23321 12333444433 2
Q ss_pred cccccc--------------ccc-------C---------------eEEEeCHHHHHHHHHHHHHHcCCEecccCC
Q 024022 234 PPVLDV--------------AML-------D---------------EVITVSSEEAIETSKLLALKEGLLQRQLLY 273 (274)
Q Consensus 234 ~~~~~~--------------~~~-------d---------------~~v~v~d~e~~~a~~~l~~~eGi~~g~s~~ 273 (274)
|.++.+ +.. . ..+.|+|+|+.++++++++++|++++|+++
T Consensus 312 psn~eR~l~~~~~~~~~~v~~~m~~l~~~gg~~~~~~~~~~~~~~f~a~~vsD~ei~~ai~~~~~~~G~~~dPhtA 387 (462)
T PRK09225 312 SSNFERLLFDLLGRDAAAVEELMEDLEEKGEYDLSDEELAALREDFSAGSVSDEETLATIREVYEEYGYLIDPHTA 387 (462)
T ss_pred CCcHHHHHHHhcCCcHHHHHHHHHHHHHcCCcccCHHHHHHhhhcceEEEECHHHHHHHHHHHHHhCCEEECchHH
Confidence 444332 000 1 468899999999999999999999999875
No 83
>cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis. The conversion of O-phosphohomoserine into threonine and inorganic phosphate is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD includes members from higher plants, cyanobacteria, archaebacteria and eubacterial groups. This CD, Thr-synth_2, includes enzymes from fungi and eubacterial groups, as well as, metazoan threonine synthase-like proteins.
Probab=99.97 E-value=5e-29 Score=231.37 Aligned_cols=241 Identities=15% Similarity=0.109 Sum_probs=184.5
Q ss_pred CcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHH---HHHHHHcCCCCCCCeEEEEeCCChHHHH-HHHHHHHcCC
Q 024022 18 TPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSM---IKDAEDKGLITPGKTVLIELTSGNTGIG-LAFIAASRGY 93 (274)
Q Consensus 18 TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~---~~~a~~~g~~~~g~~~vv~~ssGN~g~a-lA~~a~~~g~ 93 (274)
+||.++.. ++|++-.+++||||||||++..+ +.++.+... +...|+++||||+|.| ++.++.+.|+
T Consensus 88 ~pl~~l~~-------~~~~lELfhGPT~sFKD~a~~~l~~l~~~~~~~~~---~~~~Il~ATSGdTG~Aa~aaf~~~~gi 157 (460)
T cd01560 88 APLVQLGD-------NLYVLELFHGPTLAFKDMALQFLGRLLEYFLKRRN---ERITILVATSGDTGSAAIEGFRGKPNV 157 (460)
T ss_pred cceEEeCC-------CcEEeeeeeCCCcchHHhHHHHHHHHHHHHHHhcC---CCeEEEEcCCCcHHHHHHHHHhCcCCC
Confidence 77777642 68999999999999999999876 677765411 2456999999999999 4888999999
Q ss_pred eEEEEeCCC-CCHHHHHHHHHCCC---EEEEeCCCCChhHHHHHHHHHHHhC-----CCeEeeCCCCCCcchHhhhhchH
Q 024022 94 KLIIIMPST-YSIERRIILRALGA---EVYLADPAVGFEGFVKKGEEILNRT-----PNGYILGQFENPANPEIHYETTG 164 (274)
Q Consensus 94 ~~~i~~p~~-~~~~~~~~~~~~Ga---~v~~~~~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~~~~~~~~g~~t~~ 164 (274)
+|+|++|.. +++.+..+|..+|+ +++.|++ +|+++.+.++++.++. -+++-.+.. |+.++ .++.+.+
T Consensus 158 ~v~Vl~P~g~vs~~Q~~Qm~t~g~~Nv~vi~V~G--~fDd~q~~vk~~~~d~~~~~~~~l~saNSi-N~~Ri-~~Q~~yy 233 (460)
T cd01560 158 DVVVLYPKGGVSPIQELQMTTLPADNVHVVAVEG--DFDDCQSLVKALFADEDFNKKLKLSSANSI-NWARI-LAQIVYY 233 (460)
T ss_pred EEEEEEcCCCCCHHHHHHHHhhCCCceEEEEEcC--CHHHHHHHHHHHhcChhhHhcceEEEEecc-CHHHH-HHHHHHH
Confidence 999999985 99999999999996 7788875 4899999988876542 134444443 78888 5999999
Q ss_pred HHHHHhhCC----CCCEEEEecCCcccHHHHHHHHHhhCCCcEEEEEecCCCcc---ccCCCC------cccccccCCCC
Q 024022 165 PEIWNDSGG----KVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAV---LNGGQP------GKHLIQGIGAG 231 (274)
Q Consensus 165 ~Ei~~q~~~----~~d~iv~~vG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~---~~~~~~------~~~~~~gl~~~ 231 (274)
+|+++|+.+ .|+.|+||+|+||.+.|++.+.+...|-.|+|+++.++... +..|.. ..+...+|..+
T Consensus 234 f~a~~ql~~~~~~~p~~~vVPtGnfgni~a~~~Ak~mGlpi~kli~a~n~n~il~~~~~~G~y~~~~~~~~T~spamdI~ 313 (460)
T cd01560 234 FYAYLQLLKRGEGEKVEFSVPTGNFGNILAGYYAKKMGLPIKKLIVATNENDVLRRFFKTGRYDRRESLKQTLSPAMDIL 313 (460)
T ss_pred HHHHHHhccccCCCCCEEEEECCcHHHHHHHHHHHHcCCCCccEEEEeCCChHHHHHHHcCCCcCCCCCCCCcCchhhcC
Confidence 999999963 58999999999999999999977666888999976654421 123321 12233344333
Q ss_pred CCccccccccc-----C-------------------------------eEEEeCHHHHHHHHHHHHHHcCCEecccCC
Q 024022 232 VIPPVLDVAML-----D-------------------------------EVITVSSEEAIETSKLLALKEGLLQRQLLY 273 (274)
Q Consensus 232 ~~~~~~~~~~~-----d-------------------------------~~v~v~d~e~~~a~~~l~~~eGi~~g~s~~ 273 (274)
.|.++.+-+. | ..+.|+|+|+.++++++++++|++++|.++
T Consensus 314 -~psn~eR~L~~l~~~~g~~~~~~m~~~~~~g~~~~~~~~l~~~~~~f~a~~vsD~ei~~~i~~~~~~~G~~vdPhtA 390 (460)
T cd01560 314 -KSSNFERLLFLLAGRDRTKVKMLMEEFEATGFLSLPKEELKKLREDFSSGSVSDEETLETIREVYEETGYLIDPHTA 390 (460)
T ss_pred -CCCCHHHHHHHHhCCCHHHHHHHHHHHHhcCCEecCHHHHHhhhccceEEEECHHHHHHHHHHHHHhcCEEECchHH
Confidence 2444322100 1 458899999999999999999999999875
No 84
>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only]
Probab=99.96 E-value=1.1e-28 Score=212.40 Aligned_cols=264 Identities=22% Similarity=0.233 Sum_probs=197.7
Q ss_pred hhhHHHHhcccCCCcceecccccCCCC--ceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHH
Q 024022 5 CEIKKDVTELIGHTPMVYLNNVVDGCV--ARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGI 82 (274)
Q Consensus 5 ~~~~~~i~~~~~~TPl~~~~~l~~~~g--~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~ 82 (274)
.++++.....-++|||++..+|.+.+| ++||+|.|+..||||||...|......++..|. +..+.+...|.+|.
T Consensus 66 ~Ev~e~Y~~~gRPTPL~RA~~LE~~L~tparIYyK~Eg~tptGSHKiNTAlAqaYyak~eg~----~rl~TETGAGQWGs 141 (432)
T COG1350 66 EEVREAYLQIGRPTPLIRAKNLEEALGTPARIYYKYEGVTPTGSHKINTALAQAYYAKKEGA----KRLTTETGAGQWGS 141 (432)
T ss_pred HHHHHHHHHhCCCCchhhhhhHHHHhCCCcEEEEEecccCCCCCCCcchHHHHHHHHHhcCc----eeeecccCCchHHH
Confidence 455666666668999999999988776 799999999999999999999999999999996 44334457799999
Q ss_pred HHHHHHHHcCCeEEEEeCCC---CCHHHHHHHHHCCCEEEEeCCCCC----------------hhHHHHHHHHHHHhCCC
Q 024022 83 GLAFIAASRGYKLIIIMPST---YSIERRIILRALGAEVYLADPAVG----------------FEGFVKKGEEILNRTPN 143 (274)
Q Consensus 83 alA~~a~~~g~~~~i~~p~~---~~~~~~~~~~~~Ga~v~~~~~~~~----------------~~~~~~~a~~~~~~~~~ 143 (274)
|++++|+.+|++|+|||-.. ..+-+.-+|+.+||+|+..+.+.+ .-=++..|-+.+.++++
T Consensus 142 AlslA~alf~lk~~V~Mvr~Sy~qKpyRk~lM~~yGa~V~pSPS~~Te~Grk~l~e~p~hPGSLGIAISEAiE~al~~~~ 221 (432)
T COG1350 142 ALSLAAALFGLKATVFMVRVSYYQKPYRKYLMELYGAEVVPSPSELTEFGRKILKEDPDHPGSLGIAISEAIEYALKNEN 221 (432)
T ss_pred HHHHHHHHhCceeEEEEEehhhhcchHHHHHHHHhCCeecCCCcchhHHHHHHHhcCCCCCchhHHHHHHHHHHHHhCCC
Confidence 99999999999999999873 345667889999999998875321 11256677777766655
Q ss_pred eEeeCCCCCCcchHhhhhchHHHHHHhh---CCCCCEEEEecCCcccHHHHHHHHHhh---C-CCcEEEEEecCCCcccc
Q 024022 144 GYILGQFENPANPEIHYETTGPEIWNDS---GGKVDAFIAGIGTGGTVTGAGRFLKEK---N-PNIKVYGIEPSESAVLN 216 (274)
Q Consensus 144 ~~~~~~~~~~~~~~~g~~t~~~Ei~~q~---~~~~d~iv~~vG~Gg~~~Gi~~~~k~~---~-~~~~vigve~~~~~~~~ 216 (274)
..|....--.... .|+..+|.|..+|+ +..||++|-+||+|++++|+..-|-.. + ...++|+|+|..||.+.
T Consensus 222 ~kY~lGSVlnhvl-lhQTViGlEakkQle~~~e~PDv~igcvGGGSNfag~~yPfi~d~l~g~~~~~fiAvep~a~P~lT 300 (432)
T COG1350 222 TKYSLGSVLNHVL-LHQTVIGLEAKKQLEQAGEDPDVIIGCVGGGSNFAGLTYPFIGDKLRGKKETRFIAVEPKACPKLT 300 (432)
T ss_pred ceecchhHHHHHH-HHHHHHhHHHHHHHHhcCCCCCEEEEeccCCCccccccchhhhhhhcCCceeEEEEeCCccCCccc
Confidence 5665332212223 59999999996654 567999999999999999998766321 2 23899999999999876
Q ss_pred CCCC----c------c-cccccCCCCCCcccc-----------------cccccCeEEEeCHHHHHHHHHHHHHHcCCEe
Q 024022 217 GGQP----G------K-HLIQGIGAGVIPPVL-----------------DVAMLDEVITVSSEEAIETSKLLALKEGLLQ 268 (274)
Q Consensus 217 ~~~~----~------~-~~~~gl~~~~~~~~~-----------------~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~ 268 (274)
.|.- . + -.+-.||..++|+.+ .+.-+-+.+..+++|+++|++.|++.|||+-
T Consensus 301 ~GeY~YD~gDtagltPllKMyTlGhd~vpPpihAgGLRYHG~aPtls~L~~~Giv~a~ay~Q~Evfeaa~lFa~~EGiVP 380 (432)
T COG1350 301 KGEYRYDFGDTAGLTPLLKMYTLGHDYVPPPIHAGGLRYHGVAPTLSLLVKEGIVEARAYDQEEVFEAAVLFARTEGIVP 380 (432)
T ss_pred cceeeccCCchhccchhhhhhccCCCccCCCcccccccccCcChHHHHHHHcCcccceecChHHHHHHHHHHHHhcCCcc
Confidence 5431 0 0 012344444433332 2233346788999999999999999999998
Q ss_pred cccCC
Q 024022 269 RQLLY 273 (274)
Q Consensus 269 g~s~~ 273 (274)
-|-|+
T Consensus 381 APEsa 385 (432)
T COG1350 381 APESA 385 (432)
T ss_pred CCcch
Confidence 77664
No 85
>KOG1395 consensus Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=99.94 E-value=3.1e-26 Score=198.85 Aligned_cols=253 Identities=21% Similarity=0.236 Sum_probs=178.5
Q ss_pred cccCCCcceecccccCCC--CceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHH
Q 024022 13 ELIGHTPMVYLNNVVDGC--VARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAAS 90 (274)
Q Consensus 13 ~~~~~TPl~~~~~l~~~~--g~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~ 90 (274)
-.-++|||++.++|.+.+ |.+||+|+|++||+||+|...+...+..+++.|+ +..|.+...|.||.|+|.+|++
T Consensus 118 y~gRpspL~~AkRLte~~q~ga~IylKrEdlnh~GsHKiNnav~QallakrlGk----knviaETGAGQhGvatA~a~a~ 193 (477)
T KOG1395|consen 118 YLGRPSPLIRAKRLTEHCQTGARIYLKREDLNHTGSHKINNAVAQALLAKRLGK----KNVIAETGAGQHGVATATACAK 193 (477)
T ss_pred HcCCCchhHHHHHHHHHhCCCCEEEEEecCCCccccCCcccHHHHHHHHHHhcc----cceeeccCCCccchHHHHHHHH
Confidence 344789999999998765 5899999999999999999999999999999997 5656677889999999999999
Q ss_pred cCCeEEEEeCCC---CCHHHHHHHHHCCCEEEEeCCC-CChhHHHHHHHHHH-HhCCCeEeeCCC-CCC----cchHhhh
Q 024022 91 RGYKLIIIMPST---YSIERRIILRALGAEVYLADPA-VGFEGFVKKGEEIL-NRTPNGYILGQF-ENP----ANPEIHY 160 (274)
Q Consensus 91 ~g~~~~i~~p~~---~~~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~-~~~~~~~~~~~~-~~~----~~~~~g~ 160 (274)
+|++|+|+|-.+ ....++.+||.+||+|+.+... .+++++-..+-++. ....-.+|+-.. ..| .....-+
T Consensus 194 FGl~C~v~mgAed~~rqalnvfrmrllGAkV~pv~sGt~tLrda~sea~r~wvt~~ett~y~~gs~~gphp~pt~vr~fh 273 (477)
T KOG1395|consen 194 FGLDCTVYMGAEDYRRQALNVFRMRLLGAKVHPVTSGTRTLRDATSEAGRLWVTNSETTHYAAGSAIGPHPYPTVVRTFH 273 (477)
T ss_pred hCCceEEEechhHHHHHHHHHHHHHHhCceEeecCCCceehhcccchhhhhhhhhhheeeeeecccCCCCCcHHHHHHHH
Confidence 999999999863 3456788999999999999743 23444444443322 222223343221 111 1111346
Q ss_pred hchHHHHHHhh----CCCCCEEEEecCCcccHHHHHHHHHhhCCCcEEEEEecCCCcc--------ccCCCC--------
Q 024022 161 ETTGPEIWNDS----GGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAV--------LNGGQP-------- 220 (274)
Q Consensus 161 ~t~~~Ei~~q~----~~~~d~iv~~vG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~--------~~~~~~-------- 220 (274)
.+|+.|-..|. +..||.||.++|+|++.+|++.-|..- ...++|+|+..+... +..++.
T Consensus 274 svIg~Et~~Q~me~~g~~PD~vvaCvGGGSN~~Glf~pF~~d-k~v~~igveaagdg~dtp~hsatltagd~Gv~hG~~t 352 (477)
T KOG1395|consen 274 SVIGKETKIQQMEKFGKLPDAVVACVGGGSNSAGLFSPFIRD-KSVGMIGVEAAGDGVDTPKHSATLTAGDVGVFHGVTT 352 (477)
T ss_pred HHHhHHHHHHHHHHhCCCCCeEEEeccCCCccccccchhhcc-chhheeeeeecccccCCcchhceeeccccccccccee
Confidence 77888887775 345999999999999999999888643 347888998776432 111221
Q ss_pred -----------cccc-cccCCCCCC-cc--cccccccCeEEEeCHHHHHHHHHHHHHHcCCEecc
Q 024022 221 -----------GKHL-IQGIGAGVI-PP--VLDVAMLDEVITVSSEEAIETSKLLALKEGLLQRQ 270 (274)
Q Consensus 221 -----------~~~~-~~gl~~~~~-~~--~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~g~ 270 (274)
.++. -.||...-+ |. .+...-.-+++.|+|.|.+++.++|++.|||+--+
T Consensus 353 y~lq~~dGqi~~phsIsAGLdYpGvgPels~~k~~grae~isitd~eclegfk~~srlEGIIPAl 417 (477)
T KOG1395|consen 353 YVLQDTDGQIFDPHSISAGLDYPGVGPELSHLKETGRAEFISITDAECLEGFKQLSRLEGIIPAL 417 (477)
T ss_pred eeeeccCCccccCCccccCCCCCCCChhHHHHHhcCceeEEecChHHHHHHHHHHHHhcccccCC
Confidence 1111 123332111 11 12222334899999999999999999999998544
No 86
>COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism]
Probab=99.92 E-value=4.3e-24 Score=182.61 Aligned_cols=256 Identities=19% Similarity=0.227 Sum_probs=208.3
Q ss_pred ccCCCcceeccccc----CC----CCceEEEEeCCCCC-CCchhhHHHHHHHHH-----HHHcCCCCCCC----------
Q 024022 14 LIGHTPMVYLNNVV----DG----CVARIAAKLEMMQP-CSSVKDRIAYSMIKD-----AEDKGLITPGK---------- 69 (274)
Q Consensus 14 ~~~~TPl~~~~~l~----~~----~g~~l~~K~E~~np-tGS~K~R~a~~~~~~-----a~~~g~~~~g~---------- 69 (274)
++-.+||+..+... ++ ...++|+|+++.-| +||+|.|+..+-+.. |++.|.++-.+
T Consensus 75 GiIES~lv~i~~mq~~Le~~Y~~~i~G~llLK~DshLpIsGSIKARGGIYEVL~hAE~LAle~Gll~~~DDYs~L~~~~f 154 (443)
T COG3048 75 GIIESPLVEIPAMQKRLEKEYQQPIPGRLLLKKDSHLPISGSIKARGGIYEVLKHAEKLALEAGLLTLEDDYSILLSEEF 154 (443)
T ss_pred CeeccchhhhHHHHHHHHHHhcCCCCcceeeeccCCCCcccceeccccHHHHHHHHHHHHHhcCcccccchHHHhhcHHH
Confidence 45567888775543 22 33589999999988 799999988776643 44556543321
Q ss_pred ------eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCC
Q 024022 70 ------TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPN 143 (274)
Q Consensus 70 ------~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~ 143 (274)
-.|...|+||.|.++-...+.+|.++++.|..++.++|...+|..|.+|+..+. +|..+.+.-++.++..|.
T Consensus 155 ~~FFs~ysIaVGSTGNLGlSIGI~sA~lGF~vtVHMSADAr~WKKd~LRs~gV~ViEYe~--DY~~AVeeGRk~a~~DP~ 232 (443)
T COG3048 155 KDFFSRYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADARAWKKDKLRSHGVTVVEYEQ--DYGVAVEEGRKEAESDPN 232 (443)
T ss_pred HHHHHhheEeecccCccceehhhhhhhhcceEEEEecchHHHHHHHHHHhcCceEEEecc--hhhHHHHHhhhhhccCCc
Confidence 146778999999999999999999999999999999999999999999999984 488889999999988889
Q ss_pred eEeeCCCCCCcchHhhhhchHHHHHHhhCC--------CCCEEEEecCCcccHHHHHHHHHhhC-CCcEEEEEecCCCcc
Q 024022 144 GYILGQFENPANPEIHYETTGPEIWNDSGG--------KVDAFIAGIGTGGTVTGAGRFLKEKN-PNIKVYGIEPSESAV 214 (274)
Q Consensus 144 ~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~--------~~d~iv~~vG~Gg~~~Gi~~~~k~~~-~~~~vigve~~~~~~ 214 (274)
.||++...+.... .||...+..+..|++. .|-.|.+|||.||.-.|++.++|..+ .++.++-+||..+|+
T Consensus 233 c~FiDDE~S~~LF-LGYaVAa~Rlk~Q~d~~gi~vd~ehPLfVylPCGVGGgPGGVafGLKl~fgd~VhcfFaEPthsPc 311 (443)
T COG3048 233 CFFIDDENSRTLF-LGYAVAAQRLKKQFDEQGIVVDAEHPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSPC 311 (443)
T ss_pred eEEecccchhhhh-hhHHHHHHHHHHHHHhcCceecCCCceEEEeecCCCCCcchhhhhhHhhhcCceEEEEecCCCChH
Confidence 9999877666666 5999999999999842 36689999999999999999999875 569999999999997
Q ss_pred ccC----CC-----------CcccccccCCCCCCcccc---cccccCeEEEeCHHHHHHHHHHHHHHcCCEecccC
Q 024022 215 LNG----GQ-----------PGKHLIQGIGAGVIPPVL---DVAMLDEVITVSSEEAIETSKLLALKEGLLQRQLL 272 (274)
Q Consensus 215 ~~~----~~-----------~~~~~~~gl~~~~~~~~~---~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~g~s~ 272 (274)
+.- |. ...+.++||.++..+..+ ....+|..++|+|+..++...+|++.||+.++||+
T Consensus 312 MlLGv~tGlHe~ISVqdiGidn~TaADGLAVgRpSgfVgr~me~lL~G~~TvdD~~ly~lL~~L~~~e~~rlEPSa 387 (443)
T COG3048 312 MLLGVYTGLHEQISVQDIGIDNLTAADGLAVGRPSGFVGRAMERLLDGYYTVDDQTLYDLLGWLAQEEGIRLEPSA 387 (443)
T ss_pred HHHhhhhccccceeeEeecccccccccceeecCccchHHHHHHHHhCCcEEechHHHHHHHHHHHHhcCcccCchh
Confidence 542 21 134567888887655443 34789999999999999999999999999999997
No 87
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=91.44 E-value=1.7 Score=35.34 Aligned_cols=121 Identities=17% Similarity=0.123 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHcCCeEE-EEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHh
Q 024022 80 TGIGLAFIAASRGYKLI-IIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEI 158 (274)
Q Consensus 80 ~g~alA~~a~~~g~~~~-i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 158 (274)
-|..+..+++.+|.++- -+.+.+.-..-++.+...|-+|.+++++ -+...+.+..+.+..|+.-.+..++-+... .
T Consensus 12 DG~~i~~~~~~~g~~~~~rv~g~dl~~~l~~~~~~~~~~ifllG~~--~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~-~ 88 (172)
T PF03808_consen 12 DGMPIVWAARLLGRPLPERVTGSDLFPDLLRRAEQRGKRIFLLGGS--EEVLEKAAANLRRRYPGLRIVGYHHGYFDE-E 88 (172)
T ss_pred CCHHHHHHHHHcCCCCCcccCHHHHHHHHHHHHHHcCCeEEEEeCC--HHHHHHHHHHHHHHCCCeEEEEecCCCCCh-h
Confidence 35788999999998862 2222222234455666788999999865 234445556666777665544333222222 1
Q ss_pred hhhchHHHHHHhhCCCCCEEEEecCCcccHHHHHHHHHhhCCCcEEEEE
Q 024022 159 HYETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGI 207 (274)
Q Consensus 159 g~~t~~~Ei~~q~~~~~d~iv~~vG~Gg~~~Gi~~~~k~~~~~~~vigv 207 (274)
-...+..+|-+ ..||.|++..|+---= -.....+...+..-+++|
T Consensus 89 ~~~~i~~~I~~---~~pdiv~vglG~PkQE-~~~~~~~~~l~~~v~i~v 133 (172)
T PF03808_consen 89 EEEAIINRINA---SGPDIVFVGLGAPKQE-RWIARHRQRLPAGVIIGV 133 (172)
T ss_pred hHHHHHHHHHH---cCCCEEEEECCCCHHH-HHHHHHHHHCCCCEEEEE
Confidence 23333333322 2589999999986432 222333444444434444
No 88
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=87.49 E-value=6.3 Score=35.51 Aligned_cols=57 Identities=28% Similarity=0.446 Sum_probs=43.9
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEe
Q 024022 62 KGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLA 121 (274)
Q Consensus 62 ~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~ 121 (274)
...+++|++.+|...+|.-|..+...|+.+|. +++++.. +..|.+.++.+||+.+..
T Consensus 137 ~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~--s~~k~~~~~~lGAd~vi~ 193 (326)
T COG0604 137 RAGLKPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVS--SSEKLELLKELGADHVIN 193 (326)
T ss_pred hcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEec--CHHHHHHHHhcCCCEEEc
Confidence 46677888878888899999999999999998 4444433 336666999999977665
No 89
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=87.45 E-value=4.7 Score=36.35 Aligned_cols=54 Identities=19% Similarity=0.261 Sum_probs=41.3
Q ss_pred CCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEE
Q 024022 65 ITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (274)
Q Consensus 65 ~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 119 (274)
..+|.+.+|. ..|..|...+..++.+|.+++++.....++.|++.++.+|++.+
T Consensus 170 ~~~g~~vlI~-G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v 223 (355)
T cd08230 170 TWNPRRALVL-GAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYV 223 (355)
T ss_pred cCCCCEEEEE-CCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEe
Confidence 3466664554 56999999999999999986666554456788899999999864
No 90
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=86.85 E-value=14 Score=30.93 Aligned_cols=50 Identities=34% Similarity=0.440 Sum_probs=41.7
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeC
Q 024022 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLAD 122 (274)
Q Consensus 72 vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~ 122 (274)
+|+..+|+.|..++.+....+.++++++.+. +....+.++..|++++..+
T Consensus 2 ~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~-~~~~~~~l~~~g~~vv~~d 51 (233)
T PF05368_consen 2 LVTGATGNQGRSVVRALLSAGFSVRALVRDP-SSDRAQQLQALGAEVVEAD 51 (233)
T ss_dssp EEETTTSHHHHHHHHHHHHTTGCEEEEESSS-HHHHHHHHHHTTTEEEES-
T ss_pred EEECCccHHHHHHHHHHHhCCCCcEEEEecc-chhhhhhhhcccceEeecc
Confidence 5778899999999999888999999999875 4556777888999998665
No 91
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=86.81 E-value=7.4 Score=31.53 Aligned_cols=120 Identities=23% Similarity=0.204 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHcCCeEEEEeCC-CCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHh
Q 024022 80 TGIGLAFIAASRGYKLIIIMPS-TYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEI 158 (274)
Q Consensus 80 ~g~alA~~a~~~g~~~~i~~p~-~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 158 (274)
-|..+.++++.+|.+..--++. +.-..-++.+...+.+|.++++. -+...+.++.+.++.++...+..++.+...+
T Consensus 10 DG~~l~~~~~~~~~~~~~r~~g~dl~~~ll~~~~~~~~~v~llG~~--~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~- 86 (171)
T cd06533 10 DGIGVVWAARLLGGPLPERVTGSDLMPALLELAAQKGLRVFLLGAK--PEVLEKAAERLRARYPGLKIVGYHHGYFGPE- 86 (171)
T ss_pred CcHHHHHHHHHcCCCCCcccCcHHHHHHHHHHHHHcCCeEEEECCC--HHHHHHHHHHHHHHCCCcEEEEecCCCCChh-
Confidence 3567889999999982222222 11123344556678999999864 2233334455666766655443232222221
Q ss_pred hhhchHHHHHHhhC-CCCCEEEEecCCcccHHHHHHHHHhhCCCcEEEEE
Q 024022 159 HYETTGPEIWNDSG-GKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGI 207 (274)
Q Consensus 159 g~~t~~~Ei~~q~~-~~~d~iv~~vG~Gg~~~Gi~~~~k~~~~~~~vigv 207 (274)
... ++.+++. ..||.|+++.|+---= -.....+...+..-+++|
T Consensus 87 ~~~----~i~~~I~~~~pdiv~vglG~PkQE-~~~~~~~~~l~~~v~~~v 131 (171)
T cd06533 87 EEE----EIIERINASGADILFVGLGAPKQE-LWIARHKDRLPVPVAIGV 131 (171)
T ss_pred hHH----HHHHHHHHcCCCEEEEECCCCHHH-HHHHHHHHHCCCCEEEEe
Confidence 111 2444442 2599999999975432 223334444454555555
No 92
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=86.04 E-value=2.1 Score=39.01 Aligned_cols=87 Identities=20% Similarity=0.164 Sum_probs=53.1
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCC-CChhHHHHHHHHHHHhCCC-eEee
Q 024022 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPA-VGFEGFVKKGEEILNRTPN-GYIL 147 (274)
Q Consensus 70 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~~~~-~~~~ 147 (274)
...+..+||..+..+|+.+-..+-.-.|++|.-+...-...+...|+++++++-+ .++.=..+...+...++.. ...+
T Consensus 41 ~~~~~~~sgt~Al~~al~~l~~~~gdeVi~p~~t~~~~~~ai~~~G~~pv~~Di~~~~~~id~~~~~~~i~~~t~ai~~~ 120 (363)
T PF01041_consen 41 KYAVAVSSGTSALHLALRALGLGPGDEVIVPAYTFPATASAILWAGAEPVFVDIDPETLNIDPEALEKAITPKTKAILVV 120 (363)
T ss_dssp SEEEEESSHHHHHHHHHHHTTGGTTSEEEEESSS-THHHHHHHHTT-EEEEE-BETTTSSB-HHHHHHHHHTTEEEEEEE
T ss_pred CeEEEeCChhHHHHHHHHhcCCCcCceEecCCCcchHHHHHHHHhccEEEEEeccCCcCCcCHHHHHHHhccCccEEEEe
Confidence 3488899999999998888433333788999988888999999999999999854 2332222333333333223 3445
Q ss_pred CCCCCCcch
Q 024022 148 GQFENPANP 156 (274)
Q Consensus 148 ~~~~~~~~~ 156 (274)
+.+.++...
T Consensus 121 h~~G~~~d~ 129 (363)
T PF01041_consen 121 HLFGNPADM 129 (363)
T ss_dssp -GGGB---H
T ss_pred cCCCCcccH
Confidence 666666654
No 93
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=85.83 E-value=12 Score=33.67 Aligned_cols=58 Identities=17% Similarity=0.269 Sum_probs=41.0
Q ss_pred HHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEe
Q 024022 60 EDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLA 121 (274)
Q Consensus 60 ~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~ 121 (274)
.....+.+|.+.+|.. .|..|.+++..|+.+|.+++ ++. .++.|++.++.+|++.+..
T Consensus 159 ~~~~~~~~g~~VlV~G-~G~vG~~a~~~a~~~G~~vi-~~~--~~~~~~~~~~~~Ga~~~i~ 216 (349)
T TIGR03201 159 AVQAGLKKGDLVIVIG-AGGVGGYMVQTAKAMGAAVV-AID--IDPEKLEMMKGFGADLTLN 216 (349)
T ss_pred HHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEE-EEc--CCHHHHHHHHHhCCceEec
Confidence 3345567777744444 49999999999999999743 332 2557788888999976543
No 94
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=85.41 E-value=12 Score=32.85 Aligned_cols=58 Identities=24% Similarity=0.284 Sum_probs=43.3
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEe
Q 024022 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLA 121 (274)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~ 121 (274)
+...+.+|++.+|...+|..|.++...|+.+|.+++++.. +..+.+.++.+|++-+.-
T Consensus 137 ~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~---s~~~~~~l~~~Ga~~vi~ 194 (329)
T cd08294 137 EICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAG---SDDKVAWLKELGFDAVFN 194 (329)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCCEEEe
Confidence 4456778877566666899999999999999998554433 457888888999865443
No 95
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=85.39 E-value=7.5 Score=33.81 Aligned_cols=58 Identities=21% Similarity=0.237 Sum_probs=40.7
Q ss_pred HHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 024022 60 EDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (274)
Q Consensus 60 ~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 120 (274)
.+.....+|++ ++....|..|..++..|+.+|.+.++++ ..++.|.+..+.+|++.+.
T Consensus 113 l~~~~~~~g~~-VlV~G~G~vG~~~~~~ak~~G~~~Vi~~--~~~~~r~~~a~~~Ga~~~i 170 (280)
T TIGR03366 113 LEAAGDLKGRR-VLVVGAGMLGLTAAAAAAAAGAARVVAA--DPSPDRRELALSFGATALA 170 (280)
T ss_pred HHhccCCCCCE-EEEECCCHHHHHHHHHHHHcCCCEEEEE--CCCHHHHHHHHHcCCcEec
Confidence 33333457777 4445678899999999999999855555 3456788888889985433
No 96
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=83.88 E-value=17 Score=33.51 Aligned_cols=56 Identities=27% Similarity=0.316 Sum_probs=42.1
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEE
Q 024022 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (274)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 119 (274)
+...+.+|++.+| ..+|..|..++..|+.+|.+.+++... ++.+.+..+.+|++.+
T Consensus 179 ~~~~~~~g~~VlV-~G~G~iG~~aiqlAk~~Ga~~vi~~d~--~~~r~~~a~~~Ga~~v 234 (393)
T TIGR02819 179 VTAGVGPGSTVYI-AGAGPVGLAAAASAQLLGAAVVIVGDL--NPARLAQARSFGCETV 234 (393)
T ss_pred HhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCceEEEeCC--CHHHHHHHHHcCCeEE
Confidence 3455677777455 677889999999999999987664433 4678888999999743
No 97
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=81.42 E-value=16 Score=29.86 Aligned_cols=118 Identities=15% Similarity=0.154 Sum_probs=61.0
Q ss_pred HHHHHHHHHHcCCeEEEEeCC-CCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhh
Q 024022 81 GIGLAFIAASRGYKLIIIMPS-TYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIH 159 (274)
Q Consensus 81 g~alA~~a~~~g~~~~i~~p~-~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g 159 (274)
|..+.++++.+|.+..--++. +.-..-++.....|.+|.++++. -+...+.++.+.++.|+.-.... +.+...+ -
T Consensus 13 G~~iv~~~r~~g~~~~~Rv~G~dl~~~l~~~~~~~~~~vfllG~~--~~v~~~~~~~l~~~yP~l~i~g~-~g~f~~~-~ 88 (177)
T TIGR00696 13 GIGVVWGLKLLGYPQQSRVAGPDLMEELCQRAGKEKLPIFLYGGK--PDVLQQLKVKLIKEYPKLKIVGA-FGPLEPE-E 88 (177)
T ss_pred cHHHHHHHHHcCCCCCCccChHHHHHHHHHHHHHcCCeEEEECCC--HHHHHHHHHHHHHHCCCCEEEEE-CCCCChH-H
Confidence 467888999998763211221 11112234455678899999864 23344455666667665443321 2222221 1
Q ss_pred hhchHHHHHHhhC-CCCCEEEEecCCcccHHHHHHHHHhhCCCcEEEEE
Q 024022 160 YETTGPEIWNDSG-GKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGI 207 (274)
Q Consensus 160 ~~t~~~Ei~~q~~-~~~d~iv~~vG~Gg~~~Gi~~~~k~~~~~~~vigv 207 (274)
-.+|.+++. ..+|.++|+.|+=-== -...-.+...+..-+++|
T Consensus 89 ----~~~i~~~I~~s~~dil~VglG~PkQE-~~~~~~~~~~~~~v~~gv 132 (177)
T TIGR00696 89 ----RKAALAKIARSGAGIVFVGLGCPKQE-IWMRNHRHLKPDAVMIGV 132 (177)
T ss_pred ----HHHHHHHHHHcCCCEEEEEcCCcHhH-HHHHHhHHhCCCcEEEEe
Confidence 123445542 2589999999874321 111223334444555554
No 98
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=80.39 E-value=14 Score=32.60 Aligned_cols=58 Identities=26% Similarity=0.340 Sum_probs=43.5
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEe
Q 024022 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLA 121 (274)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~ 121 (274)
+.+.+++|++.+|...+|-.|.+++..|+.+|.++++... +..|.+.++.+|++.+.-
T Consensus 132 ~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~---s~~~~~~~~~lGa~~vi~ 189 (325)
T TIGR02825 132 EICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAG---SDEKVAYLKKLGFDVAFN 189 (325)
T ss_pred HHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCCEEEe
Confidence 4566778877556666788999999999999998655443 456788888999965543
No 99
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=79.82 E-value=22 Score=32.04 Aligned_cols=58 Identities=22% Similarity=0.190 Sum_probs=41.9
Q ss_pred HHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 024022 60 EDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (274)
Q Consensus 60 ~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 120 (274)
.+.+.+++|++.+|. ..|-.|.+++..|+.+|.+.++.+.. ++.|.+.++.+|++-+.
T Consensus 169 ~~~~~~~~g~~VlV~-G~g~vG~~a~~~ak~~G~~~Vi~~~~--~~~~~~~~~~~Ga~~~i 226 (358)
T TIGR03451 169 VNTGGVKRGDSVAVI-GCGGVGDAAIAGAALAGASKIIAVDI--DDRKLEWAREFGATHTV 226 (358)
T ss_pred HhccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEcC--CHHHHHHHHHcCCceEE
Confidence 344567788775555 56889999999999999875555533 45778888899996443
No 100
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=79.76 E-value=23 Score=32.19 Aligned_cols=57 Identities=19% Similarity=0.367 Sum_probs=41.1
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 024022 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (274)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 120 (274)
+...+++|++.+|. .+|..|..++..|+.+|.+.++.+. .++.|++.++.+|++.+.
T Consensus 185 ~~~~i~~g~~VlV~-G~G~vG~~a~~lak~~G~~~Vi~~~--~~~~r~~~a~~~Ga~~~i 241 (371)
T cd08281 185 NTAGVRPGQSVAVV-GLGGVGLSALLGAVAAGASQVVAVD--LNEDKLALARELGATATV 241 (371)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCcEEEEc--CCHHHHHHHHHcCCceEe
Confidence 44557788775554 5688999999999999996444443 355778888899996543
No 101
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=79.53 E-value=26 Score=31.17 Aligned_cols=57 Identities=23% Similarity=0.250 Sum_probs=42.7
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHH-CCCEEEE
Q 024022 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRA-LGAEVYL 120 (274)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~-~Ga~v~~ 120 (274)
+...+++|++.+|...+|..|.+++..|+.+|.++++... +..|.+.++. +|++-+.
T Consensus 145 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~---~~~~~~~~~~~lGa~~vi 202 (338)
T cd08295 145 EVCKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAG---SDEKVDLLKNKLGFDDAF 202 (338)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHhcCCceeE
Confidence 3456778888677777799999999999999998554433 4577888877 9986443
No 102
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=79.25 E-value=26 Score=29.07 Aligned_cols=66 Identities=24% Similarity=0.169 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHHHc---CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHH-HCCCEE
Q 024022 49 DRIAYSMIKDAEDK---GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILR-ALGAEV 118 (274)
Q Consensus 49 ~R~a~~~~~~a~~~---g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~-~~Ga~v 118 (274)
-+|..+.+..+.+. +.--.|. +++....||.|..+|......|.++++ ... +..+.+.+. .+|++.
T Consensus 6 g~Gv~~~~~~~~~~~~~~~~l~gk-~v~I~G~G~vG~~~A~~L~~~G~~Vvv-~D~--~~~~~~~~~~~~g~~~ 75 (200)
T cd01075 6 AYGVFLGMKAAAEHLLGTDSLEGK-TVAVQGLGKVGYKLAEHLLEEGAKLIV-ADI--NEEAVARAAELFGATV 75 (200)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCC-EEEEECCCHHHHHHHHHHHHCCCEEEE-EcC--CHHHHHHHHHHcCCEE
Confidence 36777777777655 3323343 488888899999999999999998774 332 234444433 336543
No 103
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=78.60 E-value=34 Score=30.57 Aligned_cols=57 Identities=28% Similarity=0.394 Sum_probs=42.6
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 024022 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (274)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 120 (274)
+...+.+|.+.+| ..+|..|.+++..|+.+|...++.+.. ++.+...++.+|++.+.
T Consensus 168 ~~~~~~~g~~vlI-~g~g~vG~~~~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~~v~ 224 (350)
T cd08256 168 DRANIKFDDVVVL-AGAGPLGLGMIGAARLKNPKKLIVLDL--KDERLALARKFGADVVL 224 (350)
T ss_pred HhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCcEEEEEcC--CHHHHHHHHHcCCcEEe
Confidence 4556777877555 666999999999999999887666654 45677788889986543
No 104
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=78.58 E-value=20 Score=31.34 Aligned_cols=68 Identities=16% Similarity=0.160 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHcCCCCCCCeEEEEe-CCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCC-CEEEEeC
Q 024022 50 RIAYSMIKDAEDKGLITPGKTVLIEL-TSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALG-AEVYLAD 122 (274)
Q Consensus 50 R~a~~~~~~a~~~g~~~~g~~~vv~~-ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~G-a~v~~~~ 122 (274)
+|....+.++.+.|. +- ++.. --=.+...+-.+|+++|+..+.+++.+++..+++.+.... +-|+.+.
T Consensus 109 ~Gie~F~~~~~~~Gv----dG-livpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~a~GFiY~vs 178 (265)
T COG0159 109 YGIEKFLRRAKEAGV----DG-LLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPDERLKKIAEAASGFIYYVS 178 (265)
T ss_pred hhHHHHHHHHHHcCC----CE-EEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEe
Confidence 566667777777775 33 3333 3334555677777788888888888877877777776666 5566554
No 105
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=78.01 E-value=24 Score=31.61 Aligned_cols=58 Identities=19% Similarity=0.205 Sum_probs=40.7
Q ss_pred HHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 024022 60 EDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (274)
Q Consensus 60 ~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 120 (274)
.+.....+|++.+|. .+|..|......|+.+|.+.++.+.. ++.+++.++.+|++.+.
T Consensus 162 l~~~~~~~g~~VlV~-G~G~vG~~aiqlak~~G~~~Vi~~~~--~~~~~~~a~~lGa~~vi 219 (343)
T PRK09880 162 AHQAGDLQGKRVFVS-GVGPIGCLIVAAVKTLGAAEIVCADV--SPRSLSLAREMGADKLV 219 (343)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEEeC--CHHHHHHHHHcCCcEEe
Confidence 333334467774554 56999999999999999865555443 45788888899997654
No 106
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=77.97 E-value=28 Score=26.50 Aligned_cols=98 Identities=12% Similarity=0.041 Sum_probs=50.6
Q ss_pred HHHHHHHcCCeEEEEeCCCCCHHHHHH-HHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhc
Q 024022 84 LAFIAASRGYKLIIIMPSTYSIERRII-LRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYET 162 (274)
Q Consensus 84 lA~~a~~~g~~~~i~~p~~~~~~~~~~-~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t 162 (274)
|+...+..+.+.+|+............ ....+.++..=.+ .++.+++..+.+.+.+.-....+...|-|.... .+-.
T Consensus 2 l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Q~g-~dLG~Rm~~a~~~~~~g~~~vvliGsD~P~l~~-~~l~ 79 (122)
T PF09837_consen 2 LAALAQADGADVVLAYTPDGDHAAFRQLWLPSGFSFFPQQG-GDLGERMANAFQQAARGYEPVVLIGSDCPDLTP-DDLE 79 (122)
T ss_dssp ------TSSSEEEEEE----TTHHHHHHHH-TTSEEEE--S-SSHHHHHHHHHHHHHTT-SEEEEE-SS-TT--H-HHHH
T ss_pred ccccccCCCcCEEEEEcCCccHHHHhccccCCCCEEeecCC-CCHHHHHHHHHHHHHcCCCcEEEEcCCCCCCCH-HHHH
Confidence 345567778888888876544444433 4455666655543 468888888877763332455555666777653 3333
Q ss_pred hHHHHHHhhCCCCCEEEEecCCccc
Q 024022 163 TGPEIWNDSGGKVDAFIAGIGTGGT 187 (274)
Q Consensus 163 ~~~Ei~~q~~~~~d~iv~~vG~Gg~ 187 (274)
-+.+.+++ .|.|+.|+--||.
T Consensus 80 ~A~~~L~~----~d~VlgPa~DGGy 100 (122)
T PF09837_consen 80 QAFEALQR----HDVVLGPAEDGGY 100 (122)
T ss_dssp HHHHHTTT-----SEEEEEBTTSSE
T ss_pred HHHHHhcc----CCEEEeeccCCCE
Confidence 44444433 4999999988775
No 107
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=77.34 E-value=27 Score=31.00 Aligned_cols=57 Identities=30% Similarity=0.454 Sum_probs=42.0
Q ss_pred HHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 024022 60 EDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (274)
Q Consensus 60 ~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 120 (274)
.+...+.+|.+.+|...+|..|.+++..|+.+|.+++++... . +.+.++.+|++.+.
T Consensus 170 ~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~---~-~~~~~~~~g~~~~~ 226 (350)
T cd08274 170 LERAGVGAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGA---A-KEEAVRALGADTVI 226 (350)
T ss_pred HhhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCc---h-hhHHHHhcCCeEEE
Confidence 345567788776666677999999999999999996555432 2 66777889987443
No 108
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=77.02 E-value=36 Score=30.17 Aligned_cols=58 Identities=29% Similarity=0.401 Sum_probs=39.5
Q ss_pred cCCCCCC--CeEEEEeCCChHHHHHHHHHHHcCC-eEEEEeCCCCCHHHHHHHHH-CCCEEEEeC
Q 024022 62 KGLITPG--KTVLIELTSGNTGIGLAFIAASRGY-KLIIIMPSTYSIERRIILRA-LGAEVYLAD 122 (274)
Q Consensus 62 ~g~~~~g--~~~vv~~ssGN~g~alA~~a~~~g~-~~~i~~p~~~~~~~~~~~~~-~Ga~v~~~~ 122 (274)
.+.+++| ++.+|...+|..|.++...|+.+|. +++++.. ++.+.+.++. +|++-+...
T Consensus 147 ~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~---s~~~~~~~~~~lGa~~vi~~ 208 (345)
T cd08293 147 KGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICG---SDEKCQLLKSELGFDAAINY 208 (345)
T ss_pred hccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcC---CHHHHHHHHHhcCCcEEEEC
Confidence 4445555 6655666678899999999999998 5554433 4467777765 998655443
No 109
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=76.74 E-value=13 Score=33.15 Aligned_cols=57 Identities=19% Similarity=0.148 Sum_probs=40.5
Q ss_pred HHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 024022 60 EDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (274)
Q Consensus 60 ~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 120 (274)
.+...+++|++.+|.. .|..|..++..|+.+|.+++++.. ++.|.+.++.+|++.+.
T Consensus 158 ~~~~~~~~g~~VlV~G-~g~iG~~a~~~a~~~G~~vi~~~~---~~~~~~~a~~~Ga~~vi 214 (329)
T TIGR02822 158 LLRASLPPGGRLGLYG-FGGSAHLTAQVALAQGATVHVMTR---GAAARRLALALGAASAG 214 (329)
T ss_pred HHhcCCCCCCEEEEEc-CCHHHHHHHHHHHHCCCeEEEEeC---ChHHHHHHHHhCCceec
Confidence 3445677887745544 588898888889999987444332 45678899999997653
No 110
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=76.73 E-value=15 Score=27.52 Aligned_cols=32 Identities=25% Similarity=0.395 Sum_probs=20.2
Q ss_pred CCCEEEEecCCcccHHHHHHHHHhhCCCcEEEEEe
Q 024022 174 KVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIE 208 (274)
Q Consensus 174 ~~d~iv~~vG~Gg~~~Gi~~~~k~~~~~~~vigve 208 (274)
.+|++|-++|++.++. .+++...+.-+++-+-
T Consensus 58 ~~d~vid~~g~~~~~~---~~~~~l~~~G~~v~vg 89 (130)
T PF00107_consen 58 GVDVVIDCVGSGDTLQ---EAIKLLRPGGRIVVVG 89 (130)
T ss_dssp SEEEEEESSSSHHHHH---HHHHHEEEEEEEEEES
T ss_pred cceEEEEecCcHHHHH---HHHHHhccCCEEEEEE
Confidence 4788888888766543 4455555555555554
No 111
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=76.25 E-value=31 Score=29.16 Aligned_cols=72 Identities=22% Similarity=0.292 Sum_probs=44.2
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCC-ChhHHHHHHHHHHHh
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAV-GFEGFVKKGEEILNR 140 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~-~~~~~~~~a~~~~~~ 140 (274)
.+.+|+..+|.-|.++|......|.+++++-.........+.+...|.++..+..+- +.++..+...+..++
T Consensus 9 k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (260)
T PRK12823 9 KVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSELVHEVAAELRAAGGEALALTADLETYAGAQAAMAAAVEA 81 (260)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchHHHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHHH
Confidence 456888888999999999988899987766543212223344556687776554321 233334444444443
No 112
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=76.24 E-value=42 Score=29.99 Aligned_cols=58 Identities=28% Similarity=0.392 Sum_probs=40.7
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEe
Q 024022 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLA 121 (274)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~ 121 (274)
+...+.+|.+.+|. ..|..|.+++..|+.+|.+.++++.. +..+.+.++.+|++.+..
T Consensus 166 ~~~~~~~g~~vlI~-g~g~vG~~a~q~a~~~G~~~v~~~~~--~~~~~~~~~~~ga~~~i~ 223 (351)
T cd08233 166 RRSGFKPGDTALVL-GAGPIGLLTILALKAAGASKIIVSEP--SEARRELAEELGATIVLD 223 (351)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEECC--CHHHHHHHHHhCCCEEEC
Confidence 44556777775555 46889999999999999955544432 556777778889865543
No 113
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=75.73 E-value=16 Score=32.47 Aligned_cols=87 Identities=24% Similarity=0.288 Sum_probs=58.3
Q ss_pred eEEEEeCCCCC-----CCchhhHHHHHHHHHHHHcCCCCCCCeEEE-EeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-H
Q 024022 33 RIAAKLEMMQP-----CSSVKDRIAYSMIKDAEDKGLITPGKTVLI-ELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-I 105 (274)
Q Consensus 33 ~l~~K~E~~np-----tGS~K~R~a~~~~~~a~~~g~~~~g~~~vv-~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~-~ 105 (274)
+-++|.++.-| |-+.---.|+-|+.+-.+.. +|+. |+ -+..+--|+++--.|+.+|++.+-++.+... +
T Consensus 124 ~~Li~vd~~~pl~~AAT~~VNP~TAyrmL~dfv~L~---~GD~-vIQNganS~VG~~ViQlaka~GiktinvVRdR~~ie 199 (354)
T KOG0025|consen 124 SDLIKVDKDIPLASAATLSVNPCTAYRMLKDFVQLN---KGDS-VIQNGANSGVGQAVIQLAKALGIKTINVVRDRPNIE 199 (354)
T ss_pred cceEEcCCcCChhhhheeccCchHHHHHHHHHHhcC---CCCe-eeecCcccHHHHHHHHHHHHhCcceEEEeecCccHH
Confidence 45677776444 22333345667777766544 4565 33 2233446677778899999999999987544 4
Q ss_pred HHHHHHHHCCCEEEEeCC
Q 024022 106 ERRIILRALGAEVYLADP 123 (274)
Q Consensus 106 ~~~~~~~~~Ga~v~~~~~ 123 (274)
+-.++++.+||+-++.+.
T Consensus 200 el~~~Lk~lGA~~ViTee 217 (354)
T KOG0025|consen 200 ELKKQLKSLGATEVITEE 217 (354)
T ss_pred HHHHHHHHcCCceEecHH
Confidence 456788999999998874
No 114
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=75.72 E-value=15 Score=27.51 Aligned_cols=53 Identities=25% Similarity=0.269 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHH
Q 024022 80 TGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEIL 138 (274)
Q Consensus 80 ~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~ 138 (274)
-|...+..|+.+|.+++++.+ ++.|++.++.+|++.+....+.+ ..+..+++.
T Consensus 2 vG~~a~q~ak~~G~~vi~~~~---~~~k~~~~~~~Ga~~~~~~~~~~---~~~~i~~~~ 54 (130)
T PF00107_consen 2 VGLMAIQLAKAMGAKVIATDR---SEEKLELAKELGADHVIDYSDDD---FVEQIRELT 54 (130)
T ss_dssp HHHHHHHHHHHTTSEEEEEES---SHHHHHHHHHTTESEEEETTTSS---HHHHHHHHT
T ss_pred hHHHHHHHHHHcCCEEEEEEC---CHHHHHHHHhhcccccccccccc---ccccccccc
Confidence 366777889999955555554 56789999999988887664432 334444443
No 115
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=75.53 E-value=29 Score=31.10 Aligned_cols=55 Identities=27% Similarity=0.398 Sum_probs=44.0
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHH-CCCEE
Q 024022 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRA-LGAEV 118 (274)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~-~Ga~v 118 (274)
+-|..++|++.+|++.+|-.|.-+--.|+..|.+++-+.. +++|.+.+.. +|-+.
T Consensus 144 ~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaG---g~eK~~~l~~~lGfD~ 199 (340)
T COG2130 144 DIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAG---GAEKCDFLTEELGFDA 199 (340)
T ss_pred HhcCCCCCCEEEEEecccccchHHHHHHHhhCCeEEEecC---CHHHHHHHHHhcCCce
Confidence 4566677889899999999998888889999999888876 4588888877 55444
No 116
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=75.48 E-value=39 Score=30.43 Aligned_cols=58 Identities=19% Similarity=0.228 Sum_probs=42.1
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHH-HCCCEEEEe
Q 024022 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILR-ALGAEVYLA 121 (274)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~-~~Ga~v~~~ 121 (274)
+.+.+.+|++.+|...+|..|..+...|+.+|.++++... +..|.+.++ .+|++-+.-
T Consensus 152 ~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~---~~~k~~~~~~~lGa~~vi~ 210 (348)
T PLN03154 152 EVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAG---SSQKVDLLKNKLGFDEAFN 210 (348)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcC---CHHHHHHHHHhcCCCEEEE
Confidence 3455778888667667799999999999999998544332 456777776 799965543
No 117
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=75.46 E-value=38 Score=30.97 Aligned_cols=80 Identities=15% Similarity=0.125 Sum_probs=42.5
Q ss_pred CCCCchhhHHHHHHHHHHHHcCC---CCCCCeEEEEeCCChHHHHHHHHHH-HcCCeEEEEeCCCCCHHHHHHHHHCCCE
Q 024022 42 QPCSSVKDRIAYSMIKDAEDKGL---ITPGKTVLIELTSGNTGIGLAFIAA-SRGYKLIIIMPSTYSIERRIILRALGAE 117 (274)
Q Consensus 42 nptGS~K~R~a~~~~~~a~~~g~---~~~g~~~vv~~ssGN~g~alA~~a~-~~g~~~~i~~p~~~~~~~~~~~~~~Ga~ 117 (274)
.+.|.-..|.+..-..... .|. +.+. ..|+..+++..+..++..+- .-|=...|++|.-.-..-....+.+|++
T Consensus 62 ~~~G~~~lr~aia~~~~~~-~~~~~~~~~~-~~i~it~Ga~~al~~~~~~l~~~gd~~~vlv~~P~y~~~~~~~~~~g~~ 139 (393)
T TIGR03538 62 TTKGLPELRQAIARWLERR-FDLPTGVDPE-RHVLPVNGTREALFAFAQAVINPGQAPLVVMPNPFYQIYEGAALLAGAE 139 (393)
T ss_pred CCCCCHHHHHHHHHHHHHh-hCCcccCCCC-ceEEECCCcHHHHHHHHHHHcCCCCcceEEecCCCCcchHHHHHhcCCe
Confidence 3456666665433322211 121 2332 23666666677766554432 2243345777764433334567789999
Q ss_pred EEEeCC
Q 024022 118 VYLADP 123 (274)
Q Consensus 118 v~~~~~ 123 (274)
++.++-
T Consensus 140 ~~~v~~ 145 (393)
T TIGR03538 140 PYFLNC 145 (393)
T ss_pred EEEeec
Confidence 998864
No 118
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=74.88 E-value=19 Score=32.07 Aligned_cols=51 Identities=24% Similarity=0.206 Sum_probs=39.9
Q ss_pred EEEeCC---ChHHHHHHHHHHHcCCeEEEEeCCCC--CHHHHHHHHHCCCEEEEeC
Q 024022 72 LIELTS---GNTGIGLAFIAASRGYKLIIIMPSTY--SIERRIILRALGAEVYLAD 122 (274)
Q Consensus 72 vv~~ss---GN~g~alA~~a~~~g~~~~i~~p~~~--~~~~~~~~~~~Ga~v~~~~ 122 (274)
|.-... +|.++|+..+++++|+++++..|+.. ++..++.++..|++|...+
T Consensus 153 va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~ 208 (301)
T TIGR00670 153 IALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETE 208 (301)
T ss_pred EEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEEC
Confidence 444444 69999999999999999999999863 5555666777899887765
No 119
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=74.85 E-value=64 Score=29.03 Aligned_cols=146 Identities=18% Similarity=0.240 Sum_probs=73.4
Q ss_pred HHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC-----------CHHH---H--HH-HHHCC-
Q 024022 54 SMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTY-----------SIER---R--II-LRALG- 115 (274)
Q Consensus 54 ~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~-----------~~~~---~--~~-~~~~G- 115 (274)
..+..+..++. ...++.....+.-......++..|+|++.+-.... .... . +. .+.+|
T Consensus 71 ~~i~~li~~~v----dgIiv~~~d~~al~~~l~~a~~~gIpVV~~d~~~~~~~~~~~V~~~~~~~~G~~~~~~l~~~l~~ 146 (336)
T PRK15408 71 QLINNFVNQGY----NAIIVSAVSPDGLCPALKRAMQRGVKVLTWDSDTKPECRSYYINQGTPEQLGSMLVEMAAKQVGK 146 (336)
T ss_pred HHHHHHHHcCC----CEEEEecCCHHHHHHHHHHHHHCCCeEEEeCCCCCCccceEEEecCCHHHHHHHHHHHHHHhcCC
Confidence 56667777775 44233333333333444457778999887743210 0111 1 11 12233
Q ss_pred --CEEEEeCCCCCh---hHHHHHHHH-HHHhCCCeEeeCC-CCCCcchHhhhhchHHHHHHhhCCCCCEEEEecCCcccH
Q 024022 116 --AEVYLADPAVGF---EGFVKKGEE-ILNRTPNGYILGQ-FENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGGTV 188 (274)
Q Consensus 116 --a~v~~~~~~~~~---~~~~~~a~~-~~~~~~~~~~~~~-~~~~~~~~~g~~t~~~Ei~~q~~~~~d~iv~~vG~Gg~~ 188 (274)
.+|..+.+..+. ..+.+-.++ +.++.++...+.. +.+ .....++. ...++++.- +++|.||++ +...+
T Consensus 147 g~gki~il~g~~~~~~~~~r~~g~~~~l~~~~p~~~vv~~~~~~-~d~~~a~~-~~~~lL~~~-pdi~aI~~~--~~~~~ 221 (336)
T PRK15408 147 DKAKVAFFYSSPTVTDQNQWVKEAKAKIAKEHPGWEIVTTQFGY-NDATKSLQ-TAEGILKAY-PDLDAIIAP--DANAL 221 (336)
T ss_pred CCCEEEEEECCCCCccHHHHHHHHHHHHHhhCCCCEEEeecCCC-CcHHHHHH-HHHHHHHHC-CCCcEEEEC--CCccH
Confidence 577655432211 122222222 2234445444432 222 22222332 455666654 578999987 34455
Q ss_pred HHHHHHHHhhCC-CcEEEEEe
Q 024022 189 TGAGRFLKEKNP-NIKVYGIE 208 (274)
Q Consensus 189 ~Gi~~~~k~~~~-~~~vigve 208 (274)
.|+..++++.+. +++|+|.+
T Consensus 222 ~Ga~~Al~~~g~~~v~VvG~D 242 (336)
T PRK15408 222 PAAAQAAENLKRDKVAIVGFS 242 (336)
T ss_pred HHHHHHHHhCCCCCEEEEEeC
Confidence 588899988753 67888886
No 120
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=74.50 E-value=33 Score=26.64 Aligned_cols=55 Identities=31% Similarity=0.330 Sum_probs=39.3
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHH----HHHHHHHCCCEEEEeCCC
Q 024022 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIE----RRIILRALGAEVYLADPA 124 (274)
Q Consensus 70 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~----~~~~~~~~Ga~v~~~~~~ 124 (274)
+.+|+..++.-|+++|..-.+.|-..++++..+.+.. ....++..|.++..+..+
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D 60 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECD 60 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESE
T ss_pred EEEEECCCCHHHHHHHHHHHhcCceEEEEeeeccccccccccccccccccccccccccc
Confidence 3478888899999999997777777776666652222 344567788988877644
No 121
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=74.39 E-value=34 Score=27.35 Aligned_cols=75 Identities=19% Similarity=0.297 Sum_probs=52.8
Q ss_pred CCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC---------CCCHHHHHHHHH
Q 024022 43 PCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPS---------TYSIERRIILRA 113 (274)
Q Consensus 43 ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~---------~~~~~~~~~~~~ 113 (274)
|.--+-++.....+.+|.+.|. ...||.+|+|.+++-++-+..- .+++++|.-. ..+++-.+.++.
T Consensus 7 pG~eNT~~tle~a~erA~elgi----k~~vVAS~tG~tA~k~lemveg-~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~e 81 (186)
T COG1751 7 PGKENTDETLEIAVERAKELGI----KHIVVASSTGYTALKALEMVEG-DLKVVVVTHHAGFEEKGTQEMDEEVRKELKE 81 (186)
T ss_pred CcccchHHHHHHHHHHHHhcCc----ceEEEEecccHHHHHHHHhccc-CceEEEEEeecccccCCceecCHHHHHHHHH
Confidence 4446678888999999999885 4545556779888776655432 3787777642 235667788888
Q ss_pred CCCEEEEeC
Q 024022 114 LGAEVYLAD 122 (274)
Q Consensus 114 ~Ga~v~~~~ 122 (274)
.|++|..-.
T Consensus 82 rGa~v~~~s 90 (186)
T COG1751 82 RGAKVLTQS 90 (186)
T ss_pred cCceeeeeh
Confidence 999987654
No 122
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=74.29 E-value=71 Score=30.46 Aligned_cols=124 Identities=13% Similarity=0.124 Sum_probs=72.1
Q ss_pred HHHHHHHHcCCeEEEEe-----------CCCCCHHHHHHHHHCCCEEEEeCCCC---Ch-hHHHHHHHHHHHhCCCe-E-
Q 024022 83 GLAFIAASRGYKLIIIM-----------PSTYSIERRIILRALGAEVYLADPAV---GF-EGFVKKGEEILNRTPNG-Y- 145 (274)
Q Consensus 83 alA~~a~~~g~~~~i~~-----------p~~~~~~~~~~~~~~Ga~v~~~~~~~---~~-~~~~~~a~~~~~~~~~~-~- 145 (274)
.+..+|+.+|+++.+.. |..+....+......|++.+....+. .| .++.+...+.+++.... .
T Consensus 261 ~ii~aaraag~pvi~atqmLeSM~~~p~PTRAe~~dv~~~v~~G~d~v~ls~eta~G~yP~~~v~~m~~I~~~~E~~~~~ 340 (473)
T TIGR01064 261 KMIRKCNRAGKPVITATQMLDSMIKNPRPTRAEVSDVANAILDGTDAVMLSGETAKGKYPVEAVKMMAKIAKEAEKALAY 340 (473)
T ss_pred HHHHHHHHcCCCEEEEChhhhhhhcCCCCCcccHHHHHHHHHcCCCEEEEcchhhcCCCHHHHHHHHHHHHHHHHhccch
Confidence 35667889999988765 23334566677777899998886432 22 24444444443322111 1
Q ss_pred ---eeCCCC-CC--cchHhhhhchHHHHHHhhCCCCCEEEEecCCcccHHHHHHHHHhhCCCcEEEEEecCCC
Q 024022 146 ---ILGQFE-NP--ANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSES 212 (274)
Q Consensus 146 ---~~~~~~-~~--~~~~~g~~t~~~Ei~~q~~~~~d~iv~~vG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~ 212 (274)
|-.+.. .. ..........+.++.+.+ +.+.||+..-||.++--++ ...|...|+++.|...
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~ia~~a~~~a~~~--~akaIVv~T~SG~TA~~vS----r~rp~~PIiAvT~~~~ 407 (473)
T TIGR01064 341 LTNFNDRKNSDPKPSTITEAIALSAVEAAEKL--DAKAIVVLTESGRTARLLS----KYRPNAPIIAVTPNER 407 (473)
T ss_pred hhhhhhhhcccccCCChHHHHHHHHHHHHhhc--CCCEEEEEcCChHHHHHHH----hhCCCCCEEEEcCCHH
Confidence 101100 00 011113344455666666 4689999999999865544 4479999999987543
No 123
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=73.65 E-value=28 Score=30.52 Aligned_cols=49 Identities=24% Similarity=0.289 Sum_probs=35.3
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEE
Q 024022 68 GKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (274)
Q Consensus 68 g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 119 (274)
+.+.+|...+|..|.+++..|+.+|.++++... +..+.+.++.+|++-+
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~v 195 (326)
T cd08289 147 QGPVLVTGATGGVGSLAVSILAKLGYEVVASTG---KADAADYLKKLGAKEV 195 (326)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCeEEEEec---CHHHHHHHHHcCCCEE
Confidence 456456566699999999999999998554433 3456777788998444
No 124
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=73.64 E-value=8.8 Score=30.48 Aligned_cols=42 Identities=19% Similarity=0.215 Sum_probs=33.4
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCC
Q 024022 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGA 116 (274)
Q Consensus 72 vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga 116 (274)
|....+||+|.++|...+..|.+++++.++. ...+.++..+-
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~~---~~~~~i~~~~~ 43 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGHEVTLWGRDE---EQIEEINETRQ 43 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTEEEEEETSCH---HHHHHHHHHTS
T ss_pred EEEECcCHHHHHHHHHHHHcCCEEEEEeccH---HHHHHHHHhCC
Confidence 6677899999999999999999999998864 55555555433
No 125
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=73.50 E-value=38 Score=29.59 Aligned_cols=56 Identities=29% Similarity=0.340 Sum_probs=39.2
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEE
Q 024022 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (274)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 119 (274)
+...+.+|.+.+|...+|..|.+++..|+.+|.+.+++... ..+.+.++.+|++-+
T Consensus 133 ~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~---~~~~~~~~~~g~~~~ 188 (324)
T cd08292 133 DFLGVKPGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRR---DAGVAELRALGIGPV 188 (324)
T ss_pred HhhCCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecC---HHHHHHHHhcCCCEE
Confidence 34556777775555567889999999999999987666543 345566666787443
No 126
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=73.42 E-value=28 Score=31.44 Aligned_cols=57 Identities=23% Similarity=0.231 Sum_probs=40.6
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 024022 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (274)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 120 (274)
+...+.+|++.+|. .+|..|.+++..|+.+|...++.+.. +..+.+.++.+|++.+.
T Consensus 181 ~~~~~~~g~~VlV~-G~g~vG~~a~q~ak~~G~~~vi~~~~--~~~~~~~~~~~Ga~~~i 237 (369)
T cd08301 181 NVAKVKKGSTVAIF-GLGAVGLAVAEGARIRGASRIIGVDL--NPSKFEQAKKFGVTEFV 237 (369)
T ss_pred hhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEcC--CHHHHHHHHHcCCceEE
Confidence 34556788775555 56999999999999999854444433 34678888999986544
No 127
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=73.31 E-value=25 Score=31.48 Aligned_cols=58 Identities=22% Similarity=0.217 Sum_probs=42.1
Q ss_pred HHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 024022 60 EDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (274)
Q Consensus 60 ~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 120 (274)
.+...+.+|.+.+|. ..|..|.+++..|+.+|.+.++.+.. +..|.+.++.+|++-+.
T Consensus 153 ~~~~~~~~g~~vlV~-G~g~vG~~~~~~a~~~G~~~v~~~~~--~~~~~~~~~~~Ga~~~i 210 (347)
T PRK10309 153 FHLAQGCEGKNVIII-GAGTIGLLAIQCAVALGAKSVTAIDI--NSEKLALAKSLGAMQTF 210 (347)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEECC--CHHHHHHHHHcCCceEe
Confidence 344556677775555 57999999999999999986555543 55677788889986443
No 128
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=72.99 E-value=30 Score=30.73 Aligned_cols=58 Identities=28% Similarity=0.361 Sum_probs=40.8
Q ss_pred HHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 024022 60 EDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (274)
Q Consensus 60 ~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 120 (274)
.+...+.+|.+.+|. ..|..|..++..|+.+|.+-++++.. ++.|.+.++.+|++.+.
T Consensus 156 l~~~~~~~g~~vlV~-G~G~vG~~~~~~ak~~G~~~vi~~~~--~~~~~~~~~~~ga~~~i 213 (339)
T cd08239 156 LRRVGVSGRDTVLVV-GAGPVGLGALMLARALGAEDVIGVDP--SPERLELAKALGADFVI 213 (339)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEECC--CHHHHHHHHHhCCCEEE
Confidence 344456777775555 56889999999999999983333432 45677888889986544
No 129
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=72.48 E-value=38 Score=28.52 Aligned_cols=56 Identities=14% Similarity=0.055 Sum_probs=40.0
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC-CHHHHHHHHHCCCEEEEeCCC
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTY-SIERRIILRALGAEVYLADPA 124 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~-~~~~~~~~~~~Ga~v~~~~~~ 124 (274)
.+.+|+..+|..|.+++....+.|.+++++..... ...-.+.++..|.++..+..+
T Consensus 8 ~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 64 (262)
T PRK13394 8 KTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGGKAIGVAMD 64 (262)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEECC
Confidence 46688889999999999999999998776655421 122344566678888766543
No 130
>PLN02740 Alcohol dehydrogenase-like
Probab=72.44 E-value=26 Score=31.96 Aligned_cols=57 Identities=23% Similarity=0.256 Sum_probs=40.6
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 024022 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (274)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 120 (274)
+...+++|++.+|. ..|..|.+++..|+.+|.+-++.+.. ++.|++.++.+|++.+.
T Consensus 192 ~~~~~~~g~~VlV~-G~G~vG~~a~q~ak~~G~~~Vi~~~~--~~~r~~~a~~~Ga~~~i 248 (381)
T PLN02740 192 NTANVQAGSSVAIF-GLGAVGLAVAEGARARGASKIIGVDI--NPEKFEKGKEMGITDFI 248 (381)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHCCCCcEEEEcC--ChHHHHHHHHcCCcEEE
Confidence 44567788774444 57999999999999999854444432 45778888889996543
No 131
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=72.40 E-value=24 Score=28.56 Aligned_cols=114 Identities=17% Similarity=0.132 Sum_probs=68.0
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCC
Q 024022 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQF 150 (274)
Q Consensus 71 ~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 150 (274)
+|..-..|+-|+++|..++.+|++++.+-|...+.. .....+.+. .+ +++ +.++- +...++-
T Consensus 38 tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~---~~~~~~~~~--~~----l~e-------ll~~a-Div~~~~- 99 (178)
T PF02826_consen 38 TVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEE---GADEFGVEY--VS----LDE-------LLAQA-DIVSLHL- 99 (178)
T ss_dssp EEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHH---HHHHTTEEE--SS----HHH-------HHHH--SEEEE-S-
T ss_pred EEEEEEEcCCcCeEeeeeecCCceeEEecccCChhh---hccccccee--ee----hhh-------hcchh-hhhhhhh-
Confidence 488889999999999999999999988888743222 233444421 11 222 22332 3333321
Q ss_pred CCCcchHhhhhchHHHHHHhhCCCCCEEEEecCCcccHHH--HHHHHHhhCCCcEEEEEec
Q 024022 151 ENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGGTVTG--AGRFLKEKNPNIKVYGIEP 209 (274)
Q Consensus 151 ~~~~~~~~g~~t~~~Ei~~q~~~~~d~iv~~vG~Gg~~~G--i~~~~k~~~~~~~vigve~ 209 (274)
|.+. .-...+..+.+++++ ++.+++-++-|+.+-- +..+++. ....-.+.+.
T Consensus 100 --plt~-~T~~li~~~~l~~mk--~ga~lvN~aRG~~vde~aL~~aL~~--g~i~ga~lDV 153 (178)
T PF02826_consen 100 --PLTP-ETRGLINAEFLAKMK--PGAVLVNVARGELVDEDALLDALES--GKIAGAALDV 153 (178)
T ss_dssp --SSST-TTTTSBSHHHHHTST--TTEEEEESSSGGGB-HHHHHHHHHT--TSEEEEEESS
T ss_pred --cccc-ccceeeeeeeeeccc--cceEEEeccchhhhhhhHHHHHHhh--ccCceEEEEC
Confidence 2222 134567788899984 6899999999998753 3444432 3344445543
No 132
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=72.31 E-value=27 Score=31.55 Aligned_cols=56 Identities=21% Similarity=0.267 Sum_probs=40.8
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEE
Q 024022 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (274)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 119 (274)
+.+.+.+|.+.+|. .+|..|.+++..|+.+|...++++.. .+.|.+.++.+|++-+
T Consensus 178 ~~~~~~~g~~vlV~-G~g~vG~~~~~~a~~~G~~~Vi~~~~--~~~~~~~~~~~ga~~~ 233 (365)
T cd08277 178 NTAKVEPGSTVAVF-GLGAVGLSAIMGAKIAGASRIIGVDI--NEDKFEKAKEFGATDF 233 (365)
T ss_pred hhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHcCCCcE
Confidence 44567788775555 57999999999999999854444433 4577888888998544
No 133
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=72.20 E-value=58 Score=31.39 Aligned_cols=49 Identities=20% Similarity=0.201 Sum_probs=39.2
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeC
Q 024022 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLAD 122 (274)
Q Consensus 71 ~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~ 122 (274)
+++....|..|++.+..++.+|..++++-. ...+++..+.+|++.+.++
T Consensus 166 kVlViGaG~iGl~Aa~~ak~lGA~V~v~d~---~~~rle~a~~lGa~~v~v~ 214 (511)
T TIGR00561 166 KVLVIGAGVAGLAAIGAANSLGAIVRAFDT---RPEVKEQVQSMGAEFLELD 214 (511)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHcCCeEEecc
Confidence 377778999999999999999987554433 4457888889999997776
No 134
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=72.10 E-value=19 Score=34.65 Aligned_cols=52 Identities=21% Similarity=0.228 Sum_probs=41.1
Q ss_pred CCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeC
Q 024022 67 PGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLAD 122 (274)
Q Consensus 67 ~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~ 122 (274)
++.+ |+....|..|.+.+..|+.+|-. ++++. ..+.++++.+.+|++.+.++
T Consensus 164 pg~k-VlViGaG~iGL~Ai~~Ak~lGA~-V~a~D--~~~~rle~aeslGA~~v~i~ 215 (509)
T PRK09424 164 PPAK-VLVIGAGVAGLAAIGAAGSLGAI-VRAFD--TRPEVAEQVESMGAEFLELD 215 (509)
T ss_pred CCCE-EEEECCcHHHHHHHHHHHHCCCE-EEEEe--CCHHHHHHHHHcCCeEEEec
Confidence 4555 88899999999999999999985 33333 46688899999999976554
No 135
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=71.97 E-value=22 Score=32.10 Aligned_cols=62 Identities=19% Similarity=0.268 Sum_probs=49.9
Q ss_pred HHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeC
Q 024022 58 DAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLAD 122 (274)
Q Consensus 58 ~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~ 122 (274)
+|-+.+..++|.+ ++....|.-|...-.+|+.+|-+=++++.- .+.+++..+.+||+++.-.
T Consensus 160 HAcr~~~vk~Gs~-vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~--~~~Rle~Ak~~Ga~~~~~~ 221 (354)
T KOG0024|consen 160 HACRRAGVKKGSK-VLVLGAGPIGLLTGLVAKAMGASDVVITDL--VANRLELAKKFGATVTDPS 221 (354)
T ss_pred hhhhhcCcccCCe-EEEECCcHHHHHHHHHHHHcCCCcEEEeec--CHHHHHHHHHhCCeEEeec
Confidence 4556666788876 888999999999999999999888877764 5677888888999887554
No 136
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=71.82 E-value=26 Score=31.71 Aligned_cols=57 Identities=21% Similarity=0.283 Sum_probs=40.7
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 024022 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (274)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 120 (274)
+...+++|++.+|. .+|..|.+++..|+.+|.+.++.+.. ++.|.+.++.+|++.+.
T Consensus 180 ~~~~~~~g~~VlV~-G~G~vG~~a~~~ak~~G~~~vi~~~~--~~~~~~~~~~lGa~~~i 236 (368)
T cd08300 180 NTAKVEPGSTVAVF-GLGAVGLAVIQGAKAAGASRIIGIDI--NPDKFELAKKFGATDCV 236 (368)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHcCCCEEE
Confidence 34556777775555 56999999999999999854444433 45677888889996543
No 137
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=71.23 E-value=34 Score=31.06 Aligned_cols=57 Identities=19% Similarity=0.195 Sum_probs=40.8
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 024022 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (274)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 120 (274)
+...+++|++.+|. ..|..|..++..|+.+|.+-++.+.. ++.|++.++.+|++.+.
T Consensus 179 ~~~~~~~g~~VlV~-G~G~iG~~a~q~Ak~~G~~~Vi~~~~--~~~~~~~a~~~Ga~~~i 235 (368)
T TIGR02818 179 NTAKVEEGDTVAVF-GLGGIGLSVIQGARMAKASRIIAIDI--NPAKFELAKKLGATDCV 235 (368)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEcC--CHHHHHHHHHhCCCeEE
Confidence 34556777775555 56999999999999999854444432 55778888899996544
No 138
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=70.97 E-value=50 Score=29.27 Aligned_cols=53 Identities=26% Similarity=0.367 Sum_probs=38.0
Q ss_pred CCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 024022 64 LITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (274)
Q Consensus 64 ~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 120 (274)
.+.++.+.+|.. +|..|.+++..|+.+|.+.+++.+ +..+...++.+|++-+.
T Consensus 160 ~~~~~~~vlV~g-~g~iG~~~~~~a~~~G~~vi~~~~---~~~~~~~~~~~g~~~~i 212 (333)
T cd08296 160 GAKPGDLVAVQG-IGGLGHLAVQYAAKMGFRTVAISR---GSDKADLARKLGAHHYI 212 (333)
T ss_pred CCCCCCEEEEEC-CcHHHHHHHHHHHHCCCeEEEEeC---ChHHHHHHHHcCCcEEe
Confidence 466777745554 899999999999999998554433 34567777889985433
No 139
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=70.96 E-value=11 Score=36.69 Aligned_cols=55 Identities=22% Similarity=0.267 Sum_probs=41.3
Q ss_pred CCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCC------------------CCHHHHHHHHHCCCEEEEe
Q 024022 66 TPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPST------------------YSIERRIILRALGAEVYLA 121 (274)
Q Consensus 66 ~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~------------------~~~~~~~~~~~~Ga~v~~~ 121 (274)
.+|++ |+...+|..|.+.|..++++|.++++|=... ....+++.++.+|++++.-
T Consensus 135 ~~g~~-V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~ 207 (564)
T PRK12771 135 DTGKR-VAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLG 207 (564)
T ss_pred CCCCE-EEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeC
Confidence 34555 8889999999999999999999977764221 1235667788899987653
No 140
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=70.95 E-value=65 Score=28.53 Aligned_cols=53 Identities=28% Similarity=0.481 Sum_probs=39.1
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCE
Q 024022 62 KGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAE 117 (274)
Q Consensus 62 ~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~ 117 (274)
...+.+|.+.+| ..+|..|.+++..|+..|.+.++.+.. ++.+.+.++.+|++
T Consensus 163 ~~~~~~g~~vlI-~g~g~vg~~~~~lak~~G~~~v~~~~~--~~~~~~~~~~~ga~ 215 (345)
T cd08287 163 SAGVRPGSTVVV-VGDGAVGLCAVLAAKRLGAERIIAMSR--HEDRQALAREFGAT 215 (345)
T ss_pred hcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCCEEEEECC--CHHHHHHHHHcCCc
Confidence 445666777556 558999999999999999986666554 34567777888884
No 141
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=70.81 E-value=38 Score=27.89 Aligned_cols=59 Identities=25% Similarity=0.296 Sum_probs=37.4
Q ss_pred EeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhC
Q 024022 74 ELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRT 141 (274)
Q Consensus 74 ~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~ 141 (274)
-.|||-+|.++|.++...|-.++++.....-+. -.+.+++.+.. .++-.+.+.+...+.
T Consensus 25 N~SSG~~G~~lA~~~~~~Ga~V~li~g~~~~~~------p~~~~~i~v~s---a~em~~~~~~~~~~~ 83 (185)
T PF04127_consen 25 NRSSGKMGAALAEEAARRGAEVTLIHGPSSLPP------PPGVKVIRVES---AEEMLEAVKELLPSA 83 (185)
T ss_dssp ES--SHHHHHHHHHHHHTT-EEEEEE-TTS----------TTEEEEE-SS---HHHHHHHHHHHGGGG
T ss_pred CCCcCHHHHHHHHHHHHCCCEEEEEecCccccc------cccceEEEecc---hhhhhhhhccccCcc
Confidence 349999999999999999999999987732111 25777887763 455556666665554
No 142
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=70.61 E-value=23 Score=31.94 Aligned_cols=61 Identities=28% Similarity=0.401 Sum_probs=44.6
Q ss_pred HHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCC
Q 024022 59 AEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (274)
Q Consensus 59 a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 123 (274)
+++.| +.||+..-|..-.| .|.-.-.+|+.+|.+++++-.. +..|.+.++.+||+......
T Consensus 174 Lk~~g-~~pG~~vgI~GlGG-LGh~aVq~AKAMG~rV~vis~~--~~kkeea~~~LGAd~fv~~~ 234 (360)
T KOG0023|consen 174 LKRSG-LGPGKWVGIVGLGG-LGHMAVQYAKAMGMRVTVISTS--SKKKEEAIKSLGADVFVDST 234 (360)
T ss_pred hHHcC-CCCCcEEEEecCcc-cchHHHHHHHHhCcEEEEEeCC--chhHHHHHHhcCcceeEEec
Confidence 34555 45887633444445 8877777899999999988664 44677899999999988764
No 143
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=70.59 E-value=48 Score=29.32 Aligned_cols=53 Identities=26% Similarity=0.328 Sum_probs=38.4
Q ss_pred CCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEE
Q 024022 64 LITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (274)
Q Consensus 64 ~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 119 (274)
.++++...+|....|..|.+++..|+.+|.++++.... +.+.+.++.+|++-+
T Consensus 162 ~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~v 214 (341)
T cd08297 162 GLKPGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVG---DEKLELAKELGADAF 214 (341)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC---HHHHHHHHHcCCcEE
Confidence 56677775666666779999999999999976555443 356677777887543
No 144
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=70.55 E-value=92 Score=28.99 Aligned_cols=57 Identities=21% Similarity=0.258 Sum_probs=37.1
Q ss_pred CCCCCCchhhHHHHHHHHHHHHcCCCCCC-CeEEEEeCCChHHHH--HHHHHHHcCCeEEEEe
Q 024022 40 MMQPCSSVKDRIAYSMIKDAEDKGLITPG-KTVLIELTSGNTGIG--LAFIAASRGYKLIIIM 99 (274)
Q Consensus 40 ~~nptGS~K~R~a~~~~~~a~~~g~~~~g-~~~vv~~ssGN~g~a--lA~~a~~~g~~~~i~~ 99 (274)
+.+|.|.. +.....+...+.+|.+..| ++.+|+..++..|.| +|.+. ..|..++++.
T Consensus 14 ~~hp~gc~--~~v~~qi~~~~~~~~~~~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~ 73 (398)
T PRK13656 14 TAHPVGCE--ANVKEQIEYVKAQGPIANGPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVF 73 (398)
T ss_pred CCCCHHHH--HHHHHHHHHHHhcCCcCCCCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEe
Confidence 45677753 3456677777778777444 555666666667777 55556 6788877665
No 145
>PRK08628 short chain dehydrogenase; Provisional
Probab=70.22 E-value=47 Score=28.06 Aligned_cols=56 Identities=21% Similarity=0.165 Sum_probs=39.4
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCC
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPA 124 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~ 124 (274)
.+.+|+..+|-.|.++|..-.+.|.+++++..........+.++..|.++..+..+
T Consensus 8 ~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D 63 (258)
T PRK08628 8 KVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDDEFAEELRALQPRAEFVQVD 63 (258)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhHHHHHHHHhcCCceEEEEcc
Confidence 45588888888999999998889999877765432223345566678777666543
No 146
>PRK12743 oxidoreductase; Provisional
Probab=70.15 E-value=48 Score=28.05 Aligned_cols=71 Identities=14% Similarity=0.212 Sum_probs=45.3
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCH--HHHHHHHHCCCEEEEeCCCC-ChhHHHHHHHHHHHh
Q 024022 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSI--ERRIILRALGAEVYLADPAV-GFEGFVKKGEEILNR 140 (274)
Q Consensus 70 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~--~~~~~~~~~Ga~v~~~~~~~-~~~~~~~~a~~~~~~ 140 (274)
+.+|+..+|.-|.++|......|.+++++...+.+. ...+.++.+|.++..+..+. +.++..+...+..++
T Consensus 4 ~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 77 (256)
T PRK12743 4 VAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQR 77 (256)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 558888888899999999999999887765543222 22455667888877665432 233333444444443
No 147
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=69.86 E-value=64 Score=27.27 Aligned_cols=55 Identities=20% Similarity=0.174 Sum_probs=39.2
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCC
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPA 124 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~ 124 (274)
.+.+|+..+|.-|.++|....+.|.+++++-. .......+.++..+.++..+..+
T Consensus 11 k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~-~~~~~~~~~~~~~~~~~~~~~~D 65 (253)
T PRK08993 11 KVAVVTGCDTGLGQGMALGLAEAGCDIVGINI-VEPTETIEQVTALGRRFLSLTAD 65 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEecC-cchHHHHHHHHhcCCeEEEEECC
Confidence 45688889999999999998889998776532 22344455666677777666543
No 148
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=69.85 E-value=52 Score=29.36 Aligned_cols=57 Identities=26% Similarity=0.202 Sum_probs=40.5
Q ss_pred HHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEE
Q 024022 60 EDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (274)
Q Consensus 60 ~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 119 (274)
.+...+++|.+.+|. .+|..|.+++..|+.+|...++.+.. +..+....+.+|++.+
T Consensus 159 ~~~~~~~~g~~vlI~-g~g~iG~~~~~lak~~G~~~v~~~~~--~~~~~~~~~~~g~~~~ 215 (351)
T cd08285 159 AELANIKLGDTVAVF-GIGPVGLMAVAGARLRGAGRIIAVGS--RPNRVELAKEYGATDI 215 (351)
T ss_pred HHccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHcCCceE
Confidence 344557777775555 57889999999999999975555544 3466777788888543
No 149
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=69.36 E-value=49 Score=28.00 Aligned_cols=54 Identities=20% Similarity=0.241 Sum_probs=38.4
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCC
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 123 (274)
++.+|+..++.-|.++|....+.|.+++++-... .+...+.++..|.+++.+..
T Consensus 9 k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~-~~~~~~~~~~~~~~~~~~~~ 62 (251)
T PRK12481 9 KVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAE-APETQAQVEALGRKFHFITA 62 (251)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCch-HHHHHHHHHHcCCeEEEEEe
Confidence 4568888888899999999889999987764432 22334456667888765543
No 150
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=69.33 E-value=27 Score=29.53 Aligned_cols=55 Identities=31% Similarity=0.368 Sum_probs=36.8
Q ss_pred HHHcCCCCCCCeEEEEe-CCC---hHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHCCC
Q 024022 59 AEDKGLITPGKTVLIEL-TSG---NTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGA 116 (274)
Q Consensus 59 a~~~g~~~~g~~~vv~~-ssG---N~g~alA~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga 116 (274)
|+..|.. .+.+|++ |.| .+.++||.+|++-|=+.+.++|+..+ ..-.+.|..+|.
T Consensus 35 AlAAG~n---AkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~ 94 (218)
T PF07279_consen 35 ALAAGWN---AKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGL 94 (218)
T ss_pred HHhcccc---ceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccc
Confidence 4445542 3345555 555 36899999999999999999998554 234455555554
No 151
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=69.28 E-value=36 Score=31.20 Aligned_cols=55 Identities=29% Similarity=0.377 Sum_probs=41.0
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 024022 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (274)
Q Consensus 63 g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 120 (274)
..+.+|.+.+|...+|..|.+++..|+.+|.+.++..+ +..+.+.++.+|+..+.
T Consensus 185 ~~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~~vi~~~~---~~~~~~~~~~~g~~~~v 239 (398)
T TIGR01751 185 ATVKPGDNVLIWGAAGGLGSYATQLARAGGGNPVAVVS---SPEKAEYCRELGAEAVI 239 (398)
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCeEEEEcC---CHHHHHHHHHcCCCEEe
Confidence 44567777566667799999999999999998655432 45677888889986554
No 152
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=69.26 E-value=51 Score=27.90 Aligned_cols=72 Identities=24% Similarity=0.216 Sum_probs=44.1
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCC-ChhHHHHHHHHHHHh
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAV-GFEGFVKKGEEILNR 140 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~-~~~~~~~~a~~~~~~ 140 (274)
.+.+|+..+|.-|.++|..-...|.+++++......+...+.+...|.++..+..+- +.++..+...+..+.
T Consensus 16 k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~ 88 (258)
T PRK06935 16 KVAIVTGGNTGLGQGYAVALAKAGADIIITTHGTNWDETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEALEE 88 (258)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 466888888889999999988899998877665211222334555677766554332 223333334444333
No 153
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=69.21 E-value=42 Score=28.28 Aligned_cols=111 Identities=14% Similarity=0.148 Sum_probs=61.3
Q ss_pred HHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCH---HHHHHHHHCCC-EEEEeCCCCCh
Q 024022 52 AYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSI---ERRIILRALGA-EVYLADPAVGF 127 (274)
Q Consensus 52 a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~---~~~~~~~~~Ga-~v~~~~~~~~~ 127 (274)
.-+++....+.=.+.||++ |.+-.+| .|...|..|+..+ .|+.=+..+. .=.+.++.+|- +|...-+++.
T Consensus 57 ~P~~vA~m~~~L~~~~g~~-VLEIGtG-sGY~aAvla~l~~---~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~- 130 (209)
T COG2518 57 APHMVARMLQLLELKPGDR-VLEIGTG-SGYQAAVLARLVG---RVVSIERIEELAEQARRNLETLGYENVTVRHGDGS- 130 (209)
T ss_pred CcHHHHHHHHHhCCCCCCe-EEEECCC-chHHHHHHHHHhC---eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcc-
Confidence 3455555555556677776 8888887 6777788888877 3333332222 11233667777 5554443321
Q ss_pred hHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhchHHHHHHhhCCCCCEEEEecCC
Q 024022 128 EGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGT 184 (274)
Q Consensus 128 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~iv~~vG~ 184 (274)
. +|---.|||-.... ++..++=.-+++||.+ --.+|+|+|+
T Consensus 131 -------------~-G~~~~aPyD~I~Vt-aaa~~vP~~Ll~QL~~-gGrlv~PvG~ 171 (209)
T COG2518 131 -------------K-GWPEEAPYDRIIVT-AAAPEVPEALLDQLKP-GGRLVIPVGS 171 (209)
T ss_pred -------------c-CCCCCCCcCEEEEe-eccCCCCHHHHHhccc-CCEEEEEEcc
Confidence 0 22212244332222 3444455567899842 2478889984
No 154
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=69.20 E-value=77 Score=27.76 Aligned_cols=56 Identities=23% Similarity=0.204 Sum_probs=40.3
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEE
Q 024022 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (274)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 119 (274)
+.+.+++|.+.+|....|..|.+++..|+.+|++.+.+.+ +..+...++.+|++-+
T Consensus 134 ~~~~~~~g~~vlI~g~~g~ig~~~~~lak~~G~~v~~~~~---~~~~~~~~~~~g~~~~ 189 (327)
T PRK10754 134 KTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVG---SAQKAQRAKKAGAWQV 189 (327)
T ss_pred hhcCCCCCCEEEEEeCCcHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHCCCCEE
Confidence 3456777777555557888999999999999998665543 3456667778887433
No 155
>PRK07109 short chain dehydrogenase; Provisional
Probab=69.10 E-value=36 Score=30.58 Aligned_cols=56 Identities=23% Similarity=0.224 Sum_probs=38.9
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHCCCEEEEeCCC
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLADPA 124 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~~~ 124 (274)
.+.+|+..+|--|.++|....+.|.+++++...... ....+.++..|+++..+..+
T Consensus 9 k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~D 65 (334)
T PRK07109 9 QVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVAD 65 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEec
Confidence 455888888889999999988899987776654211 12234566788888766543
No 156
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=68.85 E-value=34 Score=23.39 Aligned_cols=49 Identities=29% Similarity=0.267 Sum_probs=36.9
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-----HH----HHHHHHHCCCEEEE
Q 024022 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-----IE----RRIILRALGAEVYL 120 (274)
Q Consensus 72 vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~-----~~----~~~~~~~~Ga~v~~ 120 (274)
++.-.+|..|.-+|.+.+.+|.+++++...... +. -.+.++..|.+++.
T Consensus 2 vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~ 59 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHT 59 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEE
T ss_pred EEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEe
Confidence 677789999999999999999999999876421 11 23456667777664
No 157
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=68.72 E-value=85 Score=28.08 Aligned_cols=54 Identities=28% Similarity=0.440 Sum_probs=37.0
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEE
Q 024022 62 KGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEV 118 (274)
Q Consensus 62 ~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v 118 (274)
.+...+|.+.+|. .+|..|.+++..|+.+|.+.++++.. ++.+...++.+|++-
T Consensus 172 ~~~~~~g~~vlI~-g~g~vG~~~~~lak~~G~~~v~~~~~--~~~~~~~~~~~g~~~ 225 (361)
T cd08231 172 AGPVGAGDTVVVQ-GAGPLGLYAVAAAKLAGARRVIVIDG--SPERLELAREFGADA 225 (361)
T ss_pred ccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEcC--CHHHHHHHHHcCCCe
Confidence 3444467775665 47999999999999999933333322 456777778888854
No 158
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=68.59 E-value=37 Score=30.89 Aligned_cols=61 Identities=26% Similarity=0.305 Sum_probs=44.0
Q ss_pred HHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeC
Q 024022 58 DAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLAD 122 (274)
Q Consensus 58 ~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~ 122 (274)
++++...+.||+. |....-|-.|.....+|+.+|.+++.|-. ++.|.+..+.+||+.+...
T Consensus 157 ~alk~~~~~pG~~-V~I~G~GGlGh~avQ~Aka~ga~Via~~~---~~~K~e~a~~lGAd~~i~~ 217 (339)
T COG1064 157 RALKKANVKPGKW-VAVVGAGGLGHMAVQYAKAMGAEVIAITR---SEEKLELAKKLGADHVINS 217 (339)
T ss_pred eehhhcCCCCCCE-EEEECCcHHHHHHHHHHHHcCCeEEEEeC---ChHHHHHHHHhCCcEEEEc
Confidence 3445556788876 77777776777777778888877666654 5578888888888877765
No 159
>PRK06348 aspartate aminotransferase; Provisional
Probab=68.47 E-value=94 Score=28.28 Aligned_cols=50 Identities=12% Similarity=0.162 Sum_probs=31.8
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeC
Q 024022 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLAD 122 (274)
Q Consensus 72 vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~ 122 (274)
|+..+++.++..++..+- .+-.-.|+++.-+-..-...++.+|++++.++
T Consensus 92 i~it~G~~~al~~~~~~~-~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~~~ 141 (384)
T PRK06348 92 IMATVGACHGMYLALQSI-LDPGDEVIIHEPYFTPYKDQIEMVGGKPIILE 141 (384)
T ss_pred EEEcCChHHHHHHHHHHh-cCCCCEEEEeCCCCcchHHHHHHcCCEEEEec
Confidence 777777777776665543 22223456665444445667778999998886
No 160
>PRK08226 short chain dehydrogenase; Provisional
Probab=68.35 E-value=45 Score=28.25 Aligned_cols=55 Identities=25% Similarity=0.145 Sum_probs=36.7
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCC
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 123 (274)
.+.+|+..+|.-|.++|......|.+++++-...........+...|.++..+..
T Consensus 7 ~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~ 61 (263)
T PRK08226 7 KTALITGALQGIGEGIARVFARHGANLILLDISPEIEKLADELCGRGHRCTAVVA 61 (263)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhCCceEEEEC
Confidence 4558888889999999999888899876665432111223344455777655543
No 161
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=67.93 E-value=46 Score=29.06 Aligned_cols=51 Identities=25% Similarity=0.308 Sum_probs=37.8
Q ss_pred CCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 024022 67 PGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (274)
Q Consensus 67 ~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 120 (274)
+|.+.+|...+|..|.+++..|+.+|.+++++.. ++.|.+.++.+|++-+.
T Consensus 146 ~~~~vlI~ga~g~vg~~~~~~A~~~G~~vi~~~~---~~~~~~~~~~~g~~~~~ 196 (324)
T cd08288 146 GDGPVLVTGAAGGVGSVAVALLARLGYEVVASTG---RPEEADYLRSLGASEII 196 (324)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeC---CHHHHHHHHhcCCCEEE
Confidence 4556455556799999999999999998655543 44678888899985443
No 162
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=67.81 E-value=48 Score=28.99 Aligned_cols=56 Identities=27% Similarity=0.405 Sum_probs=40.2
Q ss_pred HHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEE
Q 024022 60 EDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (274)
Q Consensus 60 ~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 119 (274)
.+.+.+.+|.+.+|. .+|-.|.+++..|+.+|.+.+++ .. +..+.+.++.+|+...
T Consensus 148 ~~~~~~~~g~~vlV~-g~g~vg~~~~q~a~~~G~~vi~~-~~--~~~~~~~~~~~g~~~~ 203 (319)
T cd08242 148 LEQVPITPGDKVAVL-GDGKLGLLIAQVLALTGPDVVLV-GR--HSEKLALARRLGVETV 203 (319)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCeEEEE-cC--CHHHHHHHHHcCCcEE
Confidence 345667777775555 57889999999999999994433 22 3567778888888643
No 163
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=67.80 E-value=79 Score=29.33 Aligned_cols=80 Identities=18% Similarity=0.155 Sum_probs=43.9
Q ss_pred EEEEeCCChHHHHHHHHHHH-cCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCC-ChhHHHHHHHHHHHhCCCeEeeC
Q 024022 71 VLIELTSGNTGIGLAFIAAS-RGYKLIIIMPSTYSIERRIILRALGAEVYLADPAV-GFEGFVKKGEEILNRTPNGYILG 148 (274)
Q Consensus 71 ~vv~~ssGN~g~alA~~a~~-~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~ 148 (274)
.|+..+++..+..++..+-. -| + .|+++.-+-..-...++.+|++++.++-+. +++ .+...+..++....+|+.
T Consensus 143 ~Iiit~G~~~al~~~~~~l~~pg-d-~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~g~~--~~~l~~~~~~~~k~i~~~ 218 (431)
T PRK15481 143 EIDLTSGAIDAIERLLCAHLLPG-D-SVAVEDPCFLSSINMLRYAGFSASPVSVDAEGMQ--PEKLERALAQGARAVILT 218 (431)
T ss_pred eEEEecCcHHHHHHHHHHhCCCC-C-EEEEeCCCcHHHHHHHHHcCCeEEeeccCCCCCC--HHHHHHHHhcCCCEEEEC
Confidence 37777777777766655322 23 2 344444344455777888999999987432 222 122222223334566765
Q ss_pred -CCCCCc
Q 024022 149 -QFENPA 154 (274)
Q Consensus 149 -~~~~~~ 154 (274)
...||.
T Consensus 219 p~p~NPT 225 (431)
T PRK15481 219 PRAHNPT 225 (431)
T ss_pred CCCCCCC
Confidence 344444
No 164
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=67.78 E-value=41 Score=29.84 Aligned_cols=52 Identities=29% Similarity=0.349 Sum_probs=37.7
Q ss_pred CCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 024022 66 TPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (274)
Q Consensus 66 ~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 120 (274)
.+|.+.+|. ..|..|.++...|+.+|.+.++++ ..++.+.+.++.+|++.+.
T Consensus 162 ~~g~~vlV~-~~g~vg~~~~~la~~~G~~~v~~~--~~~~~~~~~~~~lg~~~~~ 213 (341)
T PRK05396 162 LVGEDVLIT-GAGPIGIMAAAVAKHVGARHVVIT--DVNEYRLELARKMGATRAV 213 (341)
T ss_pred CCCCeEEEE-CCCHHHHHHHHHHHHcCCCEEEEE--cCCHHHHHHHHHhCCcEEe
Confidence 356675664 468899999999999999644445 3456778888889986543
No 165
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=67.74 E-value=61 Score=27.08 Aligned_cols=55 Identities=22% Similarity=0.202 Sum_probs=38.5
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCC
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPA 124 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~ 124 (274)
.+.+|+..+|.-|.++|......|..++++.... .....+.++..+.++..+..+
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~-~~~~~~~~~~~~~~~~~~~~D 60 (248)
T TIGR01832 6 KVALVTGANTGLGQGIAVGLAEAGADIVGAGRSE-PSETQQQVEALGRRFLSLTAD 60 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCch-HHHHHHHHHhcCCceEEEECC
Confidence 4668888888899999999888999877665432 233345566677776665543
No 166
>PRK14030 glutamate dehydrogenase; Provisional
Probab=67.53 E-value=40 Score=31.83 Aligned_cols=53 Identities=19% Similarity=0.072 Sum_probs=39.6
Q ss_pred hhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeC
Q 024022 48 KDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMP 100 (274)
Q Consensus 48 K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p 100 (274)
=-||..+.+..+.+........++|+....||-|..+|.....+|.+++.+..
T Consensus 207 Tg~Gv~~~~~~~~~~~g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD 259 (445)
T PRK14030 207 TGFGALYFVHQMLETKGIDIKGKTVAISGFGNVAWGAATKATELGAKVVTISG 259 (445)
T ss_pred cHHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEc
Confidence 45788888877655432333335599999999999999999999999888654
No 167
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=67.51 E-value=27 Score=32.69 Aligned_cols=53 Identities=21% Similarity=0.248 Sum_probs=40.5
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEE
Q 024022 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (274)
Q Consensus 63 g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 119 (274)
+...+|++ ++....|.-|+.+|..++.+|.++++ +. .++.+....+.+|+++.
T Consensus 197 ~~~l~Gkt-VvViG~G~IG~~va~~ak~~Ga~ViV-~d--~d~~R~~~A~~~G~~~~ 249 (413)
T cd00401 197 DVMIAGKV-AVVAGYGDVGKGCAQSLRGQGARVIV-TE--VDPICALQAAMEGYEVM 249 (413)
T ss_pred CCCCCCCE-EEEECCCHHHHHHHHHHHHCCCEEEE-EE--CChhhHHHHHhcCCEEc
Confidence 44556666 89999999999999999999997554 33 24566777788998654
No 168
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=67.17 E-value=80 Score=27.55 Aligned_cols=56 Identities=27% Similarity=0.335 Sum_probs=41.8
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEe
Q 024022 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLA 121 (274)
Q Consensus 63 g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~ 121 (274)
+.+.+|.+.+|...+|..|.+++..|+.+|.+.+++.. +..+.+.++.+|++.+..
T Consensus 136 ~~~~~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~~~~ 191 (334)
T PTZ00354 136 GDVKKGQSVLIHAGASGVGTAAAQLAEKYGAATIITTS---SEEKVDFCKKLAAIILIR 191 (334)
T ss_pred cCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCcEEEe
Confidence 55677777666667899999999999999998765433 456677777899864443
No 169
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=67.09 E-value=82 Score=27.48 Aligned_cols=66 Identities=20% Similarity=0.130 Sum_probs=35.6
Q ss_pred hhHHHHHHHHHHHHcCCCCCCCeEEEEe-CCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEE
Q 024022 48 KDRIAYSMIKDAEDKGLITPGKTVLIEL-TSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEV 118 (274)
Q Consensus 48 K~R~a~~~~~~a~~~g~~~~g~~~vv~~-ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v 118 (274)
.-+|....+.++.+.|. ..++.. -.=.....+.-+|+..|++.+-+++.++++.+++.+...+.-.
T Consensus 100 ~~~G~e~F~~~~~~aGv-----dGlIipDLP~ee~~~~~~~~~~~gl~~I~lv~p~t~~~Ri~~i~~~a~gF 166 (259)
T PF00290_consen 100 FQYGIERFFKEAKEAGV-----DGLIIPDLPPEESEELREAAKKHGLDLIPLVAPTTPEERIKKIAKQASGF 166 (259)
T ss_dssp HHH-HHHHHHHHHHHTE-----EEEEETTSBGGGHHHHHHHHHHTT-EEEEEEETTS-HHHHHHHHHH-SSE
T ss_pred hccchHHHHHHHHHcCC-----CEEEEcCCChHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhCCcE
Confidence 44566666666666664 224433 1122344555667777777777777777777777665543333
No 170
>PRK06139 short chain dehydrogenase; Provisional
Probab=67.05 E-value=37 Score=30.53 Aligned_cols=54 Identities=30% Similarity=0.272 Sum_probs=37.3
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHCCCEEEEeC
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLAD 122 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~ 122 (274)
++.+|+..+|--|.++|......|.+++++...... +...+.++..|+++..+.
T Consensus 8 k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~ 62 (330)
T PRK06139 8 AVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAEVLVVP 62 (330)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEE
Confidence 455788888889999999988999997766543211 122345667888876554
No 171
>PRK08589 short chain dehydrogenase; Validated
Probab=66.75 E-value=46 Score=28.58 Aligned_cols=54 Identities=17% Similarity=0.099 Sum_probs=36.8
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeC
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLAD 122 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~ 122 (274)
.+.+|+..+|--|.++|......|.+++++-.........+.++..|.++..+.
T Consensus 7 k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~ 60 (272)
T PRK08589 7 KVAVITGASTGIGQASAIALAQEGAYVLAVDIAEAVSETVDKIKSNGGKAKAYH 60 (272)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHhcCCeEEEEE
Confidence 456888888889999999888889988877554111222445556677666554
No 172
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=66.52 E-value=48 Score=34.57 Aligned_cols=32 Identities=19% Similarity=0.347 Sum_probs=28.3
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 024022 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPS 101 (274)
Q Consensus 70 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~ 101 (274)
+.|+.-.+|..|.+.|+..++.|++++||=..
T Consensus 307 kkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~ 338 (944)
T PRK12779 307 PPIAVVGSGPSGLINAYLLAVEGFPVTVFEAF 338 (944)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEeeC
Confidence 44899999999999999999999999998543
No 173
>PRK08703 short chain dehydrogenase; Provisional
Probab=66.48 E-value=75 Score=26.42 Aligned_cols=33 Identities=27% Similarity=0.309 Sum_probs=26.2
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPS 101 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~ 101 (274)
.+.+|+..+|..|.++|......|.+++++-..
T Consensus 7 k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~ 39 (239)
T PRK08703 7 KTILVTGASQGLGEQVAKAYAAAGATVILVARH 39 (239)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCC
Confidence 456888899999999999988889886665443
No 174
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=66.45 E-value=27 Score=31.86 Aligned_cols=55 Identities=33% Similarity=0.384 Sum_probs=41.0
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 024022 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (274)
Q Consensus 63 g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 120 (274)
..+.+|.+.+|...+|..|.+++..|+.+|.+.+++.+ +..+.+.++.+|++.+.
T Consensus 189 ~~~~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~---s~~~~~~~~~~G~~~~i 243 (393)
T cd08246 189 NTVKPGDNVLIWGASGGLGSMAIQLARAAGANPVAVVS---SEEKAEYCRALGAEGVI 243 (393)
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEeC---CHHHHHHHHHcCCCEEE
Confidence 34566777556556799999999999999999765543 55778888889986543
No 175
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=66.29 E-value=54 Score=28.10 Aligned_cols=55 Identities=22% Similarity=0.166 Sum_probs=37.8
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC-CHHHHHHHHHCCCEEEEeCC
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTY-SIERRIILRALGAEVYLADP 123 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~-~~~~~~~~~~~Ga~v~~~~~ 123 (274)
.+.+|+..+|..|.++|....+.|.+++++-.... .+.....++..|.++..+..
T Consensus 11 k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 66 (278)
T PRK08277 11 KVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVKA 66 (278)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEC
Confidence 45588888899999999998889998777665421 11223445566877766554
No 176
>PLN02827 Alcohol dehydrogenase-like
Probab=66.29 E-value=53 Score=29.98 Aligned_cols=57 Identities=23% Similarity=0.296 Sum_probs=40.9
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 024022 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (274)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 120 (274)
+...+.+|++.+|. ..|-.|..++..|+.+|.+.++.+.. ++.|.+.++.+|++-+.
T Consensus 187 ~~~~~~~g~~VlV~-G~G~vG~~~iqlak~~G~~~vi~~~~--~~~~~~~a~~lGa~~~i 243 (378)
T PLN02827 187 NVADVSKGSSVVIF-GLGTVGLSVAQGAKLRGASQIIGVDI--NPEKAEKAKTFGVTDFI 243 (378)
T ss_pred hhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEECC--CHHHHHHHHHcCCcEEE
Confidence 34556778774555 56889999889999999875555443 45678888899996543
No 177
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=65.35 E-value=71 Score=26.39 Aligned_cols=56 Identities=21% Similarity=0.195 Sum_probs=38.7
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC--HHHHHHHHHCCCEEEEeCCC
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS--IERRIILRALGAEVYLADPA 124 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~--~~~~~~~~~~Ga~v~~~~~~ 124 (274)
.+.+|+..+|..|.+++....+.|.+++++.....+ ......++..+.++..+..+
T Consensus 6 ~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 63 (248)
T PRK05557 6 KVALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEIGALGGKALAVQGD 63 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEcC
Confidence 355888899999999999988889987666654322 12233455567888777543
No 178
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=65.22 E-value=56 Score=30.16 Aligned_cols=55 Identities=22% Similarity=0.271 Sum_probs=46.0
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCC
Q 024022 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPA 124 (274)
Q Consensus 70 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~ 124 (274)
+..+..+||..+..+|+-+-..|=.-.|++|.-+.......+...||+.+++|-+
T Consensus 50 k~ava~~sgT~AL~laL~al~ig~GDeVI~ps~TfvATan~i~~~Ga~PVFvDid 104 (374)
T COG0399 50 KYAVAVSSGTAALHLALLALAIGPGDEVIVPSFTFVATANAVLLVGAKPVFVDID 104 (374)
T ss_pred CeEEEecChHHHHHHHHHhcCCCCCCEEEecCCchHHHHHHHHHcCCeEEEEecC
Confidence 4478889998888888875446666789999988999999999999999999864
No 179
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=64.81 E-value=56 Score=27.82 Aligned_cols=56 Identities=21% Similarity=0.053 Sum_probs=37.5
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHCCCEEEEeCCC
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLADPA 124 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~~~ 124 (274)
.+.+|+..+|..|.++|......|.+++++-..... ......++..|++++.+..+
T Consensus 11 k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 67 (265)
T PRK07097 11 KIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGIEAHGYVCD 67 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcC
Confidence 456888899999999999988899987766332211 11233455668777666543
No 180
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=64.77 E-value=58 Score=28.91 Aligned_cols=51 Identities=24% Similarity=0.288 Sum_probs=37.3
Q ss_pred CCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEE
Q 024022 65 ITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEV 118 (274)
Q Consensus 65 ~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v 118 (274)
+.+|.+.+|.+ +|-.|.+++..|+.+|.+.++++ ..++.+.+.++.+|++.
T Consensus 159 ~~~g~~vlI~~-~g~vg~~a~~la~~~G~~~v~~~--~~~~~~~~~~~~~g~~~ 209 (340)
T TIGR00692 159 PISGKSVLVTG-AGPIGLMAIAVAKASGAYPVIVS--DPNEYRLELAKKMGATY 209 (340)
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEE--CCCHHHHHHHHHhCCcE
Confidence 45666756654 68888888889999998855555 33667888888888854
No 181
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=64.75 E-value=78 Score=28.40 Aligned_cols=52 Identities=13% Similarity=0.045 Sum_probs=29.7
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCC
Q 024022 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPA 124 (274)
Q Consensus 72 vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~ 124 (274)
|+..+++..+..++..+- .+-.-.|+++.-+-..-....+.+|++++.++.+
T Consensus 79 i~it~G~~~~l~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~ 130 (351)
T PRK14807 79 IFVGNGSDEIIHLIMLAF-INKGDVVIYPHPSFAMYSVYSKIAGAVEIPVKLK 130 (351)
T ss_pred EEEecCHHHHHHHHHHHh-cCCCCEEEEeCCChHHHHHHHHHcCCeEEEeecC
Confidence 555555555555544332 2222345555533344556678899999998754
No 182
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=64.55 E-value=66 Score=26.62 Aligned_cols=35 Identities=17% Similarity=0.102 Sum_probs=17.9
Q ss_pred EEEEecCCcccHHHHHHHHHhhCCCcEEEEEecCCC
Q 024022 177 AFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSES 212 (274)
Q Consensus 177 ~iv~~vG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~ 212 (274)
.+|+-+=+=-+++-+...+++++-. .|+-++....
T Consensus 130 rlV~naitlE~~~~a~~~~~~~g~~-ei~~v~is~~ 164 (187)
T COG2242 130 RLVANAITLETLAKALEALEQLGGR-EIVQVQISRG 164 (187)
T ss_pred eEEEEeecHHHHHHHHHHHHHcCCc-eEEEEEeecc
Confidence 4555554545555555555555543 5555544433
No 183
>PRK06114 short chain dehydrogenase; Provisional
Probab=64.26 E-value=87 Score=26.38 Aligned_cols=55 Identities=15% Similarity=0.117 Sum_probs=38.0
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC--HHHHHHHHHCCCEEEEeCC
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS--IERRIILRALGAEVYLADP 123 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~--~~~~~~~~~~Ga~v~~~~~ 123 (274)
.+.+|+..+|--|.++|......|.++++....... ....+.++..|.++..+..
T Consensus 9 k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~ 65 (254)
T PRK06114 9 QVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAGRRAIQIAA 65 (254)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCceEEEEc
Confidence 456888888889999999988899988776654321 2224456666777765543
No 184
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=64.23 E-value=22 Score=28.35 Aligned_cols=46 Identities=20% Similarity=0.295 Sum_probs=35.9
Q ss_pred CChHHHHHHHHHHHcCCeEEEEeCCC--CCH--HHH----HHHHHCCCEEEEeC
Q 024022 77 SGNTGIGLAFIAASRGYKLIIIMPST--YSI--ERR----IILRALGAEVYLAD 122 (274)
Q Consensus 77 sGN~g~alA~~a~~~g~~~~i~~p~~--~~~--~~~----~~~~~~Ga~v~~~~ 122 (274)
.+|.+.|++..++++|..++++.|+. .+. ..+ +..+..|.++...+
T Consensus 12 ~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ 65 (158)
T PF00185_consen 12 HNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITD 65 (158)
T ss_dssp TSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEES
T ss_pred CChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEe
Confidence 48999999999999999999999987 444 222 23445689988885
No 185
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=64.03 E-value=63 Score=27.92 Aligned_cols=55 Identities=27% Similarity=0.364 Sum_probs=39.5
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 024022 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (274)
Q Consensus 63 g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 120 (274)
+.+++|.+.+|...+|..|.+++..|+.+|.+++.+... ..+.+.++.+|++-+.
T Consensus 138 ~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~~~ 192 (320)
T cd08243 138 LGLQPGDTLLIRGGTSSVGLAALKLAKALGATVTATTRS---PERAALLKELGADEVV 192 (320)
T ss_pred cCCCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHhcCCcEEE
Confidence 445667775666667999999999999999995554433 3566777788885443
No 186
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=63.79 E-value=84 Score=26.20 Aligned_cols=56 Identities=21% Similarity=0.298 Sum_probs=39.3
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCH--HHHHHHHHCCCEEEEeCCC
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSI--ERRIILRALGAEVYLADPA 124 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~--~~~~~~~~~Ga~v~~~~~~ 124 (274)
.+.+|+..+|.-|..+|..-...|.++++....+.+. ...+.++..|.++..+..+
T Consensus 5 ~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 62 (250)
T PRK08063 5 KVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGRKALAVKAN 62 (250)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcC
Confidence 4568888899999999999888999877654433222 2234566678888776543
No 187
>PRK07550 hypothetical protein; Provisional
Probab=63.68 E-value=1.2e+02 Score=27.62 Aligned_cols=76 Identities=18% Similarity=0.160 Sum_probs=43.1
Q ss_pred CCchhhHHHHHHHHHHHHcCC-CCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeC
Q 024022 44 CSSVKDRIAYSMIKDAEDKGL-ITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLAD 122 (274)
Q Consensus 44 tGS~K~R~a~~~~~~a~~~g~-~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~ 122 (274)
.|....|.+..-.... ..|. +.+. .|+..+++..+..++..+- .+-.-.|+++.-.-..-...++..|++++.++
T Consensus 67 ~G~~~lr~~ia~~~~~-~~g~~~~~~--~i~~t~G~~~al~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~ 142 (386)
T PRK07550 67 EGLPELREAYAAHYSR-LYGAAISPE--QVHITSGCNQAFWAAMVTL-AGAGDEVILPLPWYFNHKMWLDMLGIRPVYLP 142 (386)
T ss_pred CCCHHHHHHHHHHHHH-HhCCCCCcc--eEEEecCcHHHHHHHHHHh-cCCCCEEEEcCCCCcchHHHHHhcCCEEEEEe
Confidence 4666666544432221 1221 2332 3666666677766555442 33345577776444444567788999999887
Q ss_pred C
Q 024022 123 P 123 (274)
Q Consensus 123 ~ 123 (274)
.
T Consensus 143 ~ 143 (386)
T PRK07550 143 C 143 (386)
T ss_pred c
Confidence 5
No 188
>PRK06172 short chain dehydrogenase; Provisional
Probab=63.63 E-value=62 Score=27.18 Aligned_cols=55 Identities=20% Similarity=0.245 Sum_probs=38.1
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHCCCEEEEeCC
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLADP 123 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~~ 123 (274)
.+.+|+..+|.-|.++|....+.|.+++++...... +.....++..|.++..+..
T Consensus 8 k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 63 (253)
T PRK06172 8 KVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVAC 63 (253)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEc
Confidence 466888888999999999988899987766544221 1224455667877766543
No 189
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=63.62 E-value=59 Score=26.92 Aligned_cols=33 Identities=27% Similarity=0.281 Sum_probs=28.0
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPS 101 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~ 101 (274)
.+.+|+..+|..|.+++......|.+++++...
T Consensus 6 ~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~ 38 (238)
T PRK05786 6 KKVAIIGVSEGLGYAVAYFALKEGAQVCINSRN 38 (238)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 466888899999999999999999988877664
No 190
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=63.53 E-value=62 Score=27.25 Aligned_cols=55 Identities=18% Similarity=0.090 Sum_probs=36.7
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHCCCEEEEeCC
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLADP 123 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~~ 123 (274)
.+.+|+..+|..|.++|......|.+++++-..... ......++..|.++..+..
T Consensus 11 k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~ 66 (255)
T PRK07523 11 RRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALAF 66 (255)
T ss_pred CEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEc
Confidence 466888889999999999988889986655433211 1123345566777766643
No 191
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=63.46 E-value=1e+02 Score=27.00 Aligned_cols=54 Identities=26% Similarity=0.392 Sum_probs=37.0
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCE
Q 024022 62 KGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAE 117 (274)
Q Consensus 62 ~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~ 117 (274)
.+.+.++.+.+|. .+|..|.+++..|+.+|.+++ ++....+..+...++.+|++
T Consensus 159 ~~~~~~g~~vlI~-g~g~~g~~~~~la~~~G~~v~-~~~~~~~~~~~~~~~~~g~~ 212 (306)
T cd08258 159 RSGIRPGDTVVVF-GPGPIGLLAAQVAKLQGATVV-VVGTEKDEVRLDVAKELGAD 212 (306)
T ss_pred hcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCEEE-EECCCCCHHHHHHHHHhCCc
Confidence 3455667675664 468899999999999998854 33233345677777778863
No 192
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=62.89 E-value=56 Score=28.71 Aligned_cols=54 Identities=22% Similarity=0.239 Sum_probs=38.9
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEE
Q 024022 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEV 118 (274)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v 118 (274)
+...++++.+.+| ...|..|.+++..++..|++.+++.+. ..+.+.++.+|++.
T Consensus 161 ~~~~~~~~~~vlV-~g~g~vg~~~~~la~~~g~~v~~~~~~---~~~~~~~~~~g~~~ 214 (329)
T cd08298 161 KLAGLKPGQRLGL-YGFGASAHLALQIARYQGAEVFAFTRS---GEHQELARELGADW 214 (329)
T ss_pred HhhCCCCCCEEEE-ECCcHHHHHHHHHHHHCCCeEEEEcCC---hHHHHHHHHhCCcE
Confidence 4566777777555 457889999999999999876655444 35667777888743
No 193
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=62.82 E-value=56 Score=28.91 Aligned_cols=53 Identities=28% Similarity=0.305 Sum_probs=37.8
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEE
Q 024022 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEV 118 (274)
Q Consensus 63 g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v 118 (274)
..+.+|.+.+|. .+|..|.+++..|+.+|+..++++ ..++.+...++.+|+.+
T Consensus 163 ~~~~~~~~vlI~-g~g~vg~~~~~~a~~~g~~~v~~~--~~~~~~~~~~~~~g~~~ 215 (344)
T cd08284 163 AQVRPGDTVAVI-GCGPVGLCAVLSAQVLGAARVFAV--DPVPERLERAAALGAEP 215 (344)
T ss_pred cCCccCCEEEEE-CCcHHHHHHHHHHHHcCCceEEEE--cCCHHHHHHHHHhCCeE
Confidence 445666775555 578999999999999998434444 23456777788899864
No 194
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=62.82 E-value=54 Score=24.43 Aligned_cols=81 Identities=19% Similarity=0.142 Sum_probs=43.8
Q ss_pred HHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHH-HHCCCEEEEeCCCC-ChhH
Q 024022 52 AYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIIL-RALGAEVYLADPAV-GFEG 129 (274)
Q Consensus 52 a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~-~~~Ga~v~~~~~~~-~~~~ 129 (274)
+...+..|.+.+. +..++...+|++++.+|.+- -..|.+++.|.. .-.+++ -.+|..-+.++... +.++
T Consensus 5 a~aa~~~A~~~~a----k~Ivv~T~sG~ta~~isk~R--P~~pIiavt~~~---~~~r~l~l~~GV~p~~~~~~~~~~~~ 75 (117)
T PF02887_consen 5 ARAAVELAEDLNA----KAIVVFTESGRTARLISKYR--PKVPIIAVTPNE---SVARQLSLYWGVYPVLIEEFDKDTEE 75 (117)
T ss_dssp HHHHHHHHHHHTE----SEEEEE-SSSHHHHHHHHT---TSSEEEEEESSH---HHHHHGGGSTTEEEEECSSHSHSHHH
T ss_pred HHHHHHHHHhcCC----CEEEEECCCchHHHHHHhhC--CCCeEEEEcCcH---HHHhhhhcccceEEEEeccccccHHH
Confidence 3344444555553 34344557788887776542 346777777752 222333 33566666666443 4556
Q ss_pred HHHHHHHHHHhC
Q 024022 130 FVKKGEEILNRT 141 (274)
Q Consensus 130 ~~~~a~~~~~~~ 141 (274)
.++.+.+.+++.
T Consensus 76 ~~~~a~~~~~~~ 87 (117)
T PF02887_consen 76 LIAEALEYAKER 87 (117)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHc
Confidence 666666666554
No 195
>PRK12937 short chain dehydrogenase; Provisional
Probab=62.72 E-value=87 Score=25.99 Aligned_cols=56 Identities=16% Similarity=0.186 Sum_probs=39.6
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC--HHHHHHHHHCCCEEEEeCCC
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS--IERRIILRALGAEVYLADPA 124 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~--~~~~~~~~~~Ga~v~~~~~~ 124 (274)
.+.+|+..+|..|.++|..-.+.|.+++++.....+ ....+.++.++.++..+..+
T Consensus 6 ~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 63 (245)
T PRK12937 6 KVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAGGRAIAVQAD 63 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcCCeEEEEECC
Confidence 455888888999999999988899988776654322 12234556678888776543
No 196
>PRK12939 short chain dehydrogenase; Provisional
Probab=62.28 E-value=70 Score=26.63 Aligned_cols=55 Identities=18% Similarity=0.091 Sum_probs=36.2
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC-CHHHHHHHHHCCCEEEEeCC
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTY-SIERRIILRALGAEVYLADP 123 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~-~~~~~~~~~~~Ga~v~~~~~ 123 (274)
.+.+|+..+|.-|.++|....+.|.+++++..... .......++..+.++..+..
T Consensus 8 ~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 63 (250)
T PRK12939 8 KRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAA 63 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEc
Confidence 45688888899999999998889998766633211 11223345556777665543
No 197
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=62.27 E-value=1.1e+02 Score=27.13 Aligned_cols=51 Identities=18% Similarity=0.259 Sum_probs=35.8
Q ss_pred CCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEE
Q 024022 65 ITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEV 118 (274)
Q Consensus 65 ~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v 118 (274)
+.++.+ ++...+|..|.+++..|+.+|.+.++++.. +..+...++.+|++.
T Consensus 173 ~~~~~~-vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~~ 223 (350)
T cd08240 173 LVADEP-VVIIGAGGLGLMALALLKALGPANIIVVDI--DEAKLEAAKAAGADV 223 (350)
T ss_pred CCCCCE-EEEECCcHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHhCCcE
Confidence 335555 444467889999999999999965555543 456777778888753
No 198
>PRK08862 short chain dehydrogenase; Provisional
Probab=62.23 E-value=64 Score=27.04 Aligned_cols=54 Identities=20% Similarity=0.154 Sum_probs=35.9
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHCCCEEEEeC
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLAD 122 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~ 122 (274)
.+.+|+..++.-|.++|....+.|.+++++-..... +...+.++..|.+++.+.
T Consensus 6 k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~ 60 (227)
T PRK08862 6 SIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDNVYSFQ 60 (227)
T ss_pred eEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEEE
Confidence 455777777789999999999999987765443211 122344666787776554
No 199
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=61.79 E-value=70 Score=29.03 Aligned_cols=52 Identities=17% Similarity=0.079 Sum_probs=33.2
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCC
Q 024022 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (274)
Q Consensus 72 vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 123 (274)
|+.++++..+..++..+....-+-.|+++.-+-..-...++.+|++++.++.
T Consensus 94 I~it~Ga~~al~~~~~~~~~~g~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~ 145 (374)
T PRK02610 94 ISVGNGSDELIRSLLIATCLGGEGSILVAEPTFSMYGILAQTLGIPVVRVGR 145 (374)
T ss_pred EEEcCChHHHHHHHHHHHcCCCCCeEEEcCCChHHHHHHHHHcCCEEEEecC
Confidence 6666666677665554433322224666665555556778899999999874
No 200
>PRK07478 short chain dehydrogenase; Provisional
Probab=61.32 E-value=71 Score=26.87 Aligned_cols=72 Identities=19% Similarity=0.065 Sum_probs=43.3
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHCCCEEEEeCCCC-ChhHHHHHHHHHHHh
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLADPAV-GFEGFVKKGEEILNR 140 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~~~~-~~~~~~~~a~~~~~~ 140 (274)
.+.+|+..+|.-|.++|..-.+.|.+++++...... ..-...++..|.++..+..+. +.++..+...+..++
T Consensus 7 k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (254)
T PRK07478 7 KVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVER 80 (254)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 455788888889999999988899987766543211 112334566777776654332 233333444444443
No 201
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=60.80 E-value=38 Score=30.93 Aligned_cols=52 Identities=29% Similarity=0.322 Sum_probs=35.4
Q ss_pred CCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 024022 66 TPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (274)
Q Consensus 66 ~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 120 (274)
++|++ |+....|..|..++..|+.+|.+.+++.+. +..+.+.++.+|++.+.
T Consensus 177 ~~g~~-VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~--~~~~~~~a~~lGa~~~i 228 (375)
T PLN02178 177 ESGKR-LGVNGLGGLGHIAVKIGKAFGLRVTVISRS--SEKEREAIDRLGADSFL 228 (375)
T ss_pred CCCCE-EEEEcccHHHHHHHHHHHHcCCeEEEEeCC--hHHhHHHHHhCCCcEEE
Confidence 46666 444556889999999999999875444332 23446667789996543
No 202
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=60.65 E-value=81 Score=26.18 Aligned_cols=56 Identities=20% Similarity=0.210 Sum_probs=37.4
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHCCCEEEEeCCC
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLADPA 124 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~~~ 124 (274)
.+.+|+..+|..|.+++......|.+++++.....+ ......++..|.+++.+..+
T Consensus 8 ~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 64 (239)
T PRK07666 8 KNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIATAD 64 (239)
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECC
Confidence 355888888999999999888889987776554211 11233455667777666543
No 203
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=60.36 E-value=67 Score=28.24 Aligned_cols=51 Identities=24% Similarity=0.328 Sum_probs=35.6
Q ss_pred CeEEEE-eCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeC
Q 024022 69 KTVLIE-LTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLAD 122 (274)
Q Consensus 69 ~~~vv~-~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~ 122 (274)
...++. ..+|..|.++...|+.+|.+.+++.+ +..|.+.++.+|++-+...
T Consensus 144 ~~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~---~~~~~~~~~~~g~~~~i~~ 195 (324)
T cd08291 144 AKAVVHTAAASALGRMLVRLCKADGIKVINIVR---RKEQVDLLKKIGAEYVLNS 195 (324)
T ss_pred CcEEEEccCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCcEEEEC
Confidence 343454 57788998888889999997544433 4567788888998765543
No 204
>PRK07454 short chain dehydrogenase; Provisional
Probab=60.33 E-value=79 Score=26.29 Aligned_cols=55 Identities=22% Similarity=0.194 Sum_probs=36.2
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHCCCEEEEeCC
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLADP 123 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~~ 123 (274)
.+.+|+..+|..|.+++......|.+++++...... ....+.++..+.++..+..
T Consensus 7 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 62 (241)
T PRK07454 7 PRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAYSI 62 (241)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEc
Confidence 355788888999999999999999987776643211 1122334455666655543
No 205
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=60.31 E-value=1.1e+02 Score=27.51 Aligned_cols=56 Identities=21% Similarity=0.268 Sum_probs=39.9
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 024022 62 KGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (274)
Q Consensus 62 ~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 120 (274)
...+++|.+.+|. ..|..|.+++..|+.+|.+.++.+.. +..|...++.+|++.+.
T Consensus 181 ~~~~~~g~~vlI~-g~g~vG~~~~~la~~~G~~~v~~~~~--~~~k~~~~~~~g~~~~i 236 (365)
T cd08278 181 VLKPRPGSSIAVF-GAGAVGLAAVMAAKIAGCTTIIAVDI--VDSRLELAKELGATHVI 236 (365)
T ss_pred hcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHcCCcEEe
Confidence 3456677775555 56889999999999999975555443 45677788888985443
No 206
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=60.12 E-value=94 Score=27.00 Aligned_cols=56 Identities=30% Similarity=0.447 Sum_probs=39.0
Q ss_pred HHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEE
Q 024022 60 EDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEV 118 (274)
Q Consensus 60 ~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v 118 (274)
.+...++++...+|...+|..|.+++..|+.+|.+++.+.+ ...+.+.++.+|++-
T Consensus 135 ~~~~~~~~~~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~---~~~~~~~~~~~g~~~ 190 (324)
T cd08244 135 LDLATLTPGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAG---GPAKTALVRALGADV 190 (324)
T ss_pred HHhcCCCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHcCCCE
Confidence 34455677777566666889999999999999998544433 234556667788743
No 207
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=60.12 E-value=76 Score=26.42 Aligned_cols=55 Identities=27% Similarity=0.172 Sum_probs=36.7
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC-CHHHHHHHHHCCCEEEEeCC
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTY-SIERRIILRALGAEVYLADP 123 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~-~~~~~~~~~~~Ga~v~~~~~ 123 (274)
.+.+|+..+|..|.++|......|.+++++..... -....+.++..|+++..+..
T Consensus 6 ~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 61 (253)
T PRK08217 6 KVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGTEVRGYAA 61 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEc
Confidence 45578888899999999998888988666544321 11223445566887765543
No 208
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=60.02 E-value=1e+02 Score=26.67 Aligned_cols=53 Identities=28% Similarity=0.316 Sum_probs=37.4
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCE
Q 024022 62 KGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAE 117 (274)
Q Consensus 62 ~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~ 117 (274)
.+.+.+|.+.+|...+|..|.+++..|+.+|.+.++.... ..+.+.++.+|++
T Consensus 133 ~~~~~~~~~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~ 185 (323)
T cd05282 133 YLKLPPGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVRR---DEQVEELKALGAD 185 (323)
T ss_pred hccCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecC---hHHHHHHHhcCCC
Confidence 3445677775565567889999999999999987655443 2456666778874
No 209
>PRK10083 putative oxidoreductase; Provisional
Probab=59.90 E-value=1.1e+02 Score=27.08 Aligned_cols=58 Identities=19% Similarity=0.204 Sum_probs=41.5
Q ss_pred HHcCCCCCCCeEEEEeCCChHHHHHHHHHHH-cCCeEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 024022 60 EDKGLITPGKTVLIELTSGNTGIGLAFIAAS-RGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (274)
Q Consensus 60 ~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~-~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 120 (274)
.+...+.+|.+.+|.. .|-.|.+++..|+. +|.+.++.+.. ++.|.+.++.+|++-+.
T Consensus 153 ~~~~~~~~g~~vlI~g-~g~vG~~~~~~a~~~~G~~~v~~~~~--~~~~~~~~~~~Ga~~~i 211 (339)
T PRK10083 153 TGRTGPTEQDVALIYG-AGPVGLTIVQVLKGVYNVKAVIVADR--IDERLALAKESGADWVI 211 (339)
T ss_pred HHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHhCCCCEEEEEcC--CHHHHHHHHHhCCcEEe
Confidence 4455677887745544 78888888888886 69887666544 56778888899996543
No 210
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=59.85 E-value=1.1e+02 Score=26.27 Aligned_cols=55 Identities=31% Similarity=0.428 Sum_probs=37.4
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEE
Q 024022 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEV 118 (274)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v 118 (274)
+...+.+|.+.+|. .+|-.|.+++..|+.+|.+.++++.. ...+...++.+|++-
T Consensus 123 ~~~~~~~~~~vlI~-g~g~vg~~~~~la~~~g~~~v~~~~~--~~~~~~~~~~~g~~~ 177 (312)
T cd08269 123 RRGWIRAGKTVAVI-GAGFIGLLFLQLAAAAGARRVIAIDR--RPARLALARELGATE 177 (312)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEECC--CHHHHHHHHHhCCce
Confidence 35556677775666 46789999999999999983333333 345666777788743
No 211
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=59.53 E-value=75 Score=27.74 Aligned_cols=53 Identities=26% Similarity=0.386 Sum_probs=38.2
Q ss_pred CCCCC-eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 024022 65 ITPGK-TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (274)
Q Consensus 65 ~~~g~-~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 120 (274)
+.+|. +.+|...+|..|.+++..|+.+|.+.++.... ..+.+.++.+|++-+.
T Consensus 142 ~~~~~~~vlI~g~~g~vg~~~~~la~~~G~~vi~~~~~---~~~~~~~~~~g~~~~~ 195 (323)
T TIGR02823 142 LTPEDGPVLVTGATGGVGSLAVAILSKLGYEVVASTGK---AEEEDYLKELGASEVI 195 (323)
T ss_pred CCCCCceEEEEcCCcHHHHHHHHHHHHcCCeEEEEeCC---HHHHHHHHhcCCcEEE
Confidence 56676 65665667999999999999999986555433 3455777888985433
No 212
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=59.43 E-value=54 Score=29.86 Aligned_cols=54 Identities=17% Similarity=0.114 Sum_probs=38.9
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCC
Q 024022 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPA 124 (274)
Q Consensus 71 ~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~ 124 (274)
.++..++|..+..++..+...+-.-.|++|..+-..-...++..|++++.++.+
T Consensus 48 ~~v~~~sgt~al~~~l~~~~~~~Gd~Viv~~~t~~~~~~~~~~~G~~~v~~d~d 101 (375)
T PRK11706 48 KVLLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDIR 101 (375)
T ss_pred eEEEECCHHHHHHHHHHHhCCCCCCEEEECCCCcHHHHHHHHHcCCEEEEEecC
Confidence 477778888877666544323333567888877777788889999999999753
No 213
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=59.33 E-value=66 Score=29.07 Aligned_cols=55 Identities=31% Similarity=0.402 Sum_probs=35.6
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 024022 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (274)
Q Consensus 63 g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 120 (274)
+.+.+|++ |+....|..|..++..|+.+|.+.+++... +..+....+.+|++-+.
T Consensus 179 ~~~~~g~~-VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~--~~~~~~~~~~~Ga~~vi 233 (360)
T PLN02586 179 GMTEPGKH-LGVAGLGGLGHVAVKIGKAFGLKVTVISSS--SNKEDEAINRLGADSFL 233 (360)
T ss_pred cccCCCCE-EEEECCCHHHHHHHHHHHHCCCEEEEEeCC--cchhhhHHHhCCCcEEE
Confidence 33456666 444667889999888999999875544332 22334555678886444
No 214
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=59.30 E-value=77 Score=27.34 Aligned_cols=52 Identities=31% Similarity=0.461 Sum_probs=37.9
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCE
Q 024022 62 KGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAE 117 (274)
Q Consensus 62 ~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~ 117 (274)
.+.+.+|.+.+|...+|..|.+++..|+.+|.+.+.+.+. .+.+.++.+|++
T Consensus 138 ~~~~~~g~~vli~g~~g~~g~~~~~la~~~g~~v~~~~~~----~~~~~~~~~g~~ 189 (319)
T cd08267 138 AGKVKPGQRVLINGASGGVGTFAVQIAKALGAHVTGVCST----RNAELVRSLGAD 189 (319)
T ss_pred hcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCH----HHHHHHHHcCCC
Confidence 3446677775666667999999999999999986655532 566677778874
No 215
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=59.26 E-value=72 Score=30.24 Aligned_cols=53 Identities=15% Similarity=0.005 Sum_probs=38.7
Q ss_pred hhHHHHHHHHHHHHcC-CCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 024022 48 KDRIAYSMIKDAEDKG-LITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPS 101 (274)
Q Consensus 48 K~R~a~~~~~~a~~~g-~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~ 101 (274)
=-+|..+.+..+.+.. .-..| ++++....||-|..+|.....+|.+++.+...
T Consensus 216 TG~Gv~~~~~~~l~~~~~~l~G-k~VaVqG~GnVg~~aa~~L~e~GakVVavSD~ 269 (454)
T PTZ00079 216 TGYGLVYFVLEVLKKLNDSLEG-KTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDS 269 (454)
T ss_pred cHHHHHHHHHHHHHHcCCCcCC-CEEEEECCCHHHHHHHHHHHHCCCEEEEEEcC
Confidence 4467888887766543 22234 45899999999999999988889888766654
No 216
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=59.17 E-value=73 Score=25.66 Aligned_cols=54 Identities=26% Similarity=0.212 Sum_probs=36.5
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCC-----CCHHHHHHHHHCCCEEEEeCCC
Q 024022 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPST-----YSIERRIILRALGAEVYLADPA 124 (274)
Q Consensus 71 ~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~-----~~~~~~~~~~~~Ga~v~~~~~~ 124 (274)
-+|+...|..|..+|..-...+-.-++++... .....++.++..|++|..+..+
T Consensus 3 ylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~D 61 (181)
T PF08659_consen 3 YLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCD 61 (181)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--
T ss_pred EEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccC
Confidence 47777889999999998666665555555443 2235678889999999887654
No 217
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=59.17 E-value=43 Score=28.09 Aligned_cols=48 Identities=23% Similarity=0.222 Sum_probs=32.2
Q ss_pred CCChHHHHHHHHHHHcCCeEEEEeCCCCC--HHHHHHHHHCCCEEEEeCC
Q 024022 76 TSGNTGIGLAFIAASRGYKLIIIMPSTYS--IERRIILRALGAEVYLADP 123 (274)
Q Consensus 76 ssGN~g~alA~~a~~~g~~~~i~~p~~~~--~~~~~~~~~~Ga~v~~~~~ 123 (274)
+++.-|.++|....+.|.++++.-..... ....+..+.+|.+++.++-
T Consensus 4 ~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~ 53 (241)
T PF13561_consen 4 SSSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKEYGAEVIQCDL 53 (241)
T ss_dssp STSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHTTSEEEESCT
T ss_pred CCCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHcCCceEeecC
Confidence 45668889988888899888877665322 1123344567888766664
No 218
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=59.15 E-value=76 Score=27.82 Aligned_cols=56 Identities=25% Similarity=0.326 Sum_probs=39.0
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEe
Q 024022 62 KGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLA 121 (274)
Q Consensus 62 ~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~ 121 (274)
...+.++.+.+|. ..|..|.+++..|+.+|++++++.+ +..+.+.++.+|++.+..
T Consensus 157 ~~~~~~~~~vlI~-g~g~iG~~~~~~a~~~G~~v~~~~~---~~~~~~~~~~~g~~~~~~ 212 (330)
T cd08245 157 DAGPRPGERVAVL-GIGGLGHLAVQYARAMGFETVAITR---SPDKRELARKLGADEVVD 212 (330)
T ss_pred hhCCCCCCEEEEE-CCCHHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHhCCcEEec
Confidence 3456677665555 5677999999999999998665544 345667777788765543
No 219
>PRK08643 acetoin reductase; Validated
Probab=59.06 E-value=92 Score=26.15 Aligned_cols=55 Identities=16% Similarity=0.179 Sum_probs=36.6
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHH-HHHHHHHCCCEEEEeCC
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIE-RRIILRALGAEVYLADP 123 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~-~~~~~~~~Ga~v~~~~~ 123 (274)
++.+|+..+|..|.++|....+.|.+++++........ ....++..|.++..+..
T Consensus 3 k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 58 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGGKAIAVKA 58 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEC
Confidence 35588888888999999998889988766654322211 12334556777766654
No 220
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=58.95 E-value=47 Score=31.26 Aligned_cols=51 Identities=18% Similarity=0.175 Sum_probs=39.7
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCC-----CCHHHHHHHHHCCCEEEEe
Q 024022 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPST-----YSIERRIILRALGAEVYLA 121 (274)
Q Consensus 71 ~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~-----~~~~~~~~~~~~Ga~v~~~ 121 (274)
.++....||.|.-+|..+.++|.+++++.... .....++.++..|.+++.-
T Consensus 274 ~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~l~~~GV~~~~~ 329 (449)
T TIGR01316 274 SVVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDMTARVEEIAHAEEEGVKFHFL 329 (449)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHhCCCEEEec
Confidence 48889999999999999999999998887652 1233446677788887754
No 221
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=58.95 E-value=91 Score=26.05 Aligned_cols=56 Identities=18% Similarity=0.198 Sum_probs=38.5
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCH-HHHHHHHHCCCEEEEeCCC
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSI-ERRIILRALGAEVYLADPA 124 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~-~~~~~~~~~Ga~v~~~~~~ 124 (274)
.+.+|+..+|..|.++|..-...|.+++++....... .....++..+.++..+..+
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 61 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAMD 61 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcC
Confidence 4558888889999999999888899887776543222 2234455678777655543
No 222
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=58.89 E-value=94 Score=28.10 Aligned_cols=85 Identities=16% Similarity=0.265 Sum_probs=52.0
Q ss_pred eEEEEeCCChHHHHHHHHHHHc--CCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCCh-hHHHHHHHHHHHhCCCeEe
Q 024022 70 TVLIELTSGNTGIGLAFIAASR--GYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGF-EGFVKKGEEILNRTPNGYI 146 (274)
Q Consensus 70 ~~vv~~ssGN~g~alA~~a~~~--g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~-~~~~~~a~~~~~~~~~~~~ 146 (274)
.+++.+.+|-.|.-.|+ ++.+ |=++.++.-..-++.-.+..+.+|++|..++.+.+- ..-......+++..++.++
T Consensus 69 ~tf~isgsGh~g~E~al-~N~lePgd~vLv~~~G~wg~ra~D~~~r~ga~V~~v~~~~G~~~~le~i~~~lsqh~p~~vf 147 (385)
T KOG2862|consen 69 QTFVISGSGHSGWEAAL-VNLLEPGDNVLVVSTGTWGQRAADCARRYGAEVDVVEADIGQAVPLEEITEKLSQHKPKAVF 147 (385)
T ss_pred ceEEEecCCcchHHHHH-HhhcCCCCeEEEEEechHHHHHHHHHHhhCceeeEEecCcccCccHHHHHHHHHhcCCceEE
Confidence 34888888866655443 4443 444555554445666678889999999988644211 1223344555566678888
Q ss_pred eCCCCCCcc
Q 024022 147 LGQFENPAN 155 (274)
Q Consensus 147 ~~~~~~~~~ 155 (274)
+.+.++...
T Consensus 148 v~hgdsSTg 156 (385)
T KOG2862|consen 148 VTHGDSSTG 156 (385)
T ss_pred EEecCcccc
Confidence 877765443
No 223
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=58.75 E-value=57 Score=27.55 Aligned_cols=52 Identities=21% Similarity=0.074 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 024022 50 RIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPS 101 (274)
Q Consensus 50 R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~ 101 (274)
||..+.+..+.+.-......++++....||-|..+|......|.+.+.+...
T Consensus 4 ~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~ 55 (217)
T cd05211 4 YGVVVAMKAAMKHLGDSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDP 55 (217)
T ss_pred hHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcC
Confidence 5666666665543222222345999999999999999999999888888765
No 224
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=58.72 E-value=88 Score=28.33 Aligned_cols=55 Identities=25% Similarity=0.378 Sum_probs=39.7
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEE
Q 024022 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEV 118 (274)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v 118 (274)
+...+.+|.+.+| ...|..|.+++..|+.+|...++++.. +..|.+.++.+|+..
T Consensus 170 ~~~~~~~g~~vlI-~g~g~vg~~~~~~a~~~G~~~vi~~~~--~~~~~~~~~~~g~~~ 224 (375)
T cd08282 170 ELAGVQPGDTVAV-FGAGPVGLMAAYSAILRGASRVYVVDH--VPERLDLAESIGAIP 224 (375)
T ss_pred HhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCCEEEEECC--CHHHHHHHHHcCCeE
Confidence 4445667777555 567889999999999999854444433 567888888899853
No 225
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=58.66 E-value=1.3e+02 Score=26.45 Aligned_cols=56 Identities=16% Similarity=0.083 Sum_probs=38.9
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC--HHHHHHHHHCCCEEEEeCCC
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS--IERRIILRALGAEVYLADPA 124 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~--~~~~~~~~~~Ga~v~~~~~~ 124 (274)
.+.+|+..+|.-|.++|..-...|.++++.-..... ....+.++..|.+++.+..+
T Consensus 13 k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~D 70 (306)
T PRK07792 13 KVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAGAKAVAVAGD 70 (306)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcCCeEEEEeCC
Confidence 466888888889999999988889987665432211 22345567778888776643
No 226
>PRK08278 short chain dehydrogenase; Provisional
Probab=58.64 E-value=1.2e+02 Score=26.09 Aligned_cols=55 Identities=22% Similarity=0.237 Sum_probs=38.2
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCH--------HHHHHHHHCCCEEEEeCC
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSI--------ERRIILRALGAEVYLADP 123 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~--------~~~~~~~~~Ga~v~~~~~ 123 (274)
.+.+|+..+|--|.++|....+.|.+++++.....+. .-.+.++..|.+++.+..
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 69 (273)
T PRK08278 7 KTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVG 69 (273)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEe
Confidence 4557888888899999999889999988777543211 112345667887766543
No 227
>PLN00175 aminotransferase family protein; Provisional
Probab=58.34 E-value=1.6e+02 Score=27.31 Aligned_cols=82 Identities=10% Similarity=0.072 Sum_probs=42.2
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCC-CChhHHHHHHHHHHHhCCCeEeeCCC
Q 024022 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPA-VGFEGFVKKGEEILNRTPNGYILGQF 150 (274)
Q Consensus 72 vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~ 150 (274)
|+..+++..+..++..+- ++-.-.|++++-.-..-...++.+|++++.++-. .++.-..+..++........++++..
T Consensus 118 I~vt~G~~~al~~~~~~l-~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~l~~~~~~~~k~i~i~~p 196 (413)
T PLN00175 118 VTVTSGCTEAIAATILGL-INPGDEVILFAPFYDSYEATLSMAGAKIKTVTLRPPDFAVPEDELKAAFTSKTRAILINTP 196 (413)
T ss_pred EEEeCCHHHHHHHHHHHh-CCCCCEEEEeCCCchhHHHHHHHcCCEEEEEECCcccCCCCHHHHHHhcCcCceEEEecCC
Confidence 666666667766555433 3323345555433444566778899999988642 11221122222222223356666544
Q ss_pred CCCc
Q 024022 151 ENPA 154 (274)
Q Consensus 151 ~~~~ 154 (274)
+||.
T Consensus 197 ~NPt 200 (413)
T PLN00175 197 HNPT 200 (413)
T ss_pred CCCC
Confidence 4544
No 228
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=58.17 E-value=1.3e+02 Score=26.31 Aligned_cols=55 Identities=29% Similarity=0.362 Sum_probs=39.0
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEE
Q 024022 62 KGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (274)
Q Consensus 62 ~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 119 (274)
.+.+.+|.+.+|...+|-.|.+++..|+.+|.+++.+.. +..+...++.+|++-+
T Consensus 134 ~~~~~~~~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~v 188 (329)
T cd08250 134 VGEMKSGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCS---SDEKAEFLKSLGCDRP 188 (329)
T ss_pred hcCCCCCCEEEEEeCccHHHHHHHHHHHHcCCeEEEEeC---cHHHHHHHHHcCCceE
Confidence 355677777667677888999999999999998655543 3355666677887433
No 229
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=58.05 E-value=1.2e+02 Score=26.01 Aligned_cols=57 Identities=26% Similarity=0.301 Sum_probs=40.0
Q ss_pred HHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEE
Q 024022 60 EDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (274)
Q Consensus 60 ~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 119 (274)
.+...+.++.+.+|...+|..|.+++..++.+|.+.+++... ..+.+.++.+|++.+
T Consensus 132 ~~~~~~~~~~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~~ 188 (325)
T TIGR02824 132 FQRGGLKAGETVLIHGGASGIGTTAIQLAKAFGARVFTTAGS---DEKCAACEALGADIA 188 (325)
T ss_pred HHhcCCCCCCEEEEEcCcchHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHHcCCcEE
Confidence 345667777776676677889999999999999886654432 344556677786544
No 230
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=58.03 E-value=89 Score=27.21 Aligned_cols=53 Identities=32% Similarity=0.449 Sum_probs=39.5
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEE
Q 024022 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEV 118 (274)
Q Consensus 63 g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v 118 (274)
..+.++.+.+|...+|..|.+++..++.+|.+++++... ..+.+.++.+|++.
T Consensus 158 ~~~~~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~~~~~ 210 (332)
T cd08259 158 AGVKKGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTRS---PEKLKILKELGADY 210 (332)
T ss_pred hCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeCC---HHHHHHHHHcCCcE
Confidence 566777776777778999999999999999997666542 34556667777643
No 231
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=58.02 E-value=1.5e+02 Score=27.04 Aligned_cols=78 Identities=13% Similarity=0.116 Sum_probs=40.6
Q ss_pred CCCchhhHHHHHHHHHHHHcCC--CCCCCeEEEEeCCChHHHHHHHHHHHcCC---eEEEEeCCCCCHHHHHHHHHCCCE
Q 024022 43 PCSSVKDRIAYSMIKDAEDKGL--ITPGKTVLIELTSGNTGIGLAFIAASRGY---KLIIIMPSTYSIERRIILRALGAE 117 (274)
Q Consensus 43 ptGS~K~R~a~~~~~~a~~~g~--~~~g~~~vv~~ssGN~g~alA~~a~~~g~---~~~i~~p~~~~~~~~~~~~~~Ga~ 117 (274)
+.|.-+.|-+...... ...|. +.+.. .|+..+++..+..++..+-. +- .-.|++|.-.-..-...++.+|++
T Consensus 64 ~~G~~~lr~~ia~~~~-~~~g~~~~~~~~-~i~it~G~~~al~~~~~~l~-~~~~~gd~vlv~~P~y~~~~~~~~~~g~~ 140 (396)
T PRK09147 64 TAGLPALREAIAAWLE-RRYGLPALDPAT-QVLPVNGSREALFAFAQTVI-DRDGPGPLVVCPNPFYQIYEGAALLAGAE 140 (396)
T ss_pred CCCCHHHHHHHHHHHH-HHhCCCcCCccc-eEEECCChHHHHHHHHHHHc-CCCCCCCEEEEcCCCccchHHHHHhcCCE
Confidence 4566666654332221 11232 33322 36666666676655544321 21 234555543333445667889999
Q ss_pred EEEeCC
Q 024022 118 VYLADP 123 (274)
Q Consensus 118 v~~~~~ 123 (274)
++.++-
T Consensus 141 ~~~vp~ 146 (396)
T PRK09147 141 PYFLNC 146 (396)
T ss_pred EEEecc
Confidence 999874
No 232
>PRK06181 short chain dehydrogenase; Provisional
Probab=58.00 E-value=81 Score=26.64 Aligned_cols=54 Identities=22% Similarity=0.212 Sum_probs=36.3
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHCCCEEEEeCC
Q 024022 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLADP 123 (274)
Q Consensus 70 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~~ 123 (274)
+.+|+..+|..|.+++......|.+++++...... ....+.++..|.++..+..
T Consensus 3 ~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~ 57 (263)
T PRK06181 3 VVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGGEALVVPT 57 (263)
T ss_pred EEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEc
Confidence 45788888999999999888899987776654211 1223345556777765543
No 233
>PRK06128 oxidoreductase; Provisional
Probab=57.99 E-value=1.3e+02 Score=26.26 Aligned_cols=56 Identities=16% Similarity=0.132 Sum_probs=39.2
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC---CHHHHHHHHHCCCEEEEeCCC
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTY---SIERRIILRALGAEVYLADPA 124 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~---~~~~~~~~~~~Ga~v~~~~~~ 124 (274)
.+.+|+..+|--|.++|..-.+.|.++++...... .....+.++..|.+++.+..+
T Consensus 56 k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 114 (300)
T PRK06128 56 RKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGD 114 (300)
T ss_pred CEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecC
Confidence 45688888899999999998889998876543221 122345566778887766543
No 234
>PRK05876 short chain dehydrogenase; Provisional
Probab=57.98 E-value=90 Score=26.92 Aligned_cols=55 Identities=18% Similarity=0.082 Sum_probs=36.2
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHCCCEEEEeCC
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLADP 123 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~~ 123 (274)
.+.+|+..+|.-|.++|....+.|.+++++...... ....+.++..|.++..+..
T Consensus 7 k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~ 62 (275)
T PRK05876 7 RGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMC 62 (275)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeC
Confidence 456888888889999999988899986655433111 1123345566877765543
No 235
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=57.96 E-value=74 Score=28.21 Aligned_cols=52 Identities=29% Similarity=0.340 Sum_probs=37.2
Q ss_pred CCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEE
Q 024022 65 ITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (274)
Q Consensus 65 ~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 119 (274)
..+|.+.+|.+ .|..|.+++..|+.+|.+.++++. .+..|....+.+|++-+
T Consensus 161 ~~~g~~vlV~g-~g~vg~~~~~la~~~G~~~v~~~~--~~~~~~~~~~~~g~~~~ 212 (341)
T cd05281 161 DVSGKSVLITG-CGPIGLMAIAVAKAAGASLVIASD--PNPYRLELAKKMGADVV 212 (341)
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEEC--CCHHHHHHHHHhCccee
Confidence 34666756654 688999999999999986555553 35677778788887543
No 236
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=57.70 E-value=96 Score=25.83 Aligned_cols=56 Identities=20% Similarity=0.211 Sum_probs=37.9
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC--HHHHHHHHHCCCEEEEeCCC
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS--IERRIILRALGAEVYLADPA 124 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~--~~~~~~~~~~Ga~v~~~~~~ 124 (274)
.+.+|+..+|--|.++|......|..+++....... +.....++..|.++..+..+
T Consensus 7 ~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D 64 (247)
T PRK12935 7 KVAIVTGGAKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGKEGHDVYAVQAD 64 (247)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCEEEEEcCCcHHHHHHHHHHHHhcCCeEEEEECC
Confidence 456888888999999999888889887765443211 11234455678888776643
No 237
>PRK07890 short chain dehydrogenase; Provisional
Probab=57.66 E-value=88 Score=26.22 Aligned_cols=55 Identities=20% Similarity=0.187 Sum_probs=36.3
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHCCCEEEEeCC
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLADP 123 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~~ 123 (274)
.+.+|+..+|.-|.++|......|.+++++-..... ..-...++..|.++..+..
T Consensus 6 k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 61 (258)
T PRK07890 6 KVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGRRALAVPT 61 (258)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEec
Confidence 466888889999999999988999987766543211 1122334445776655543
No 238
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=57.63 E-value=1.7e+02 Score=27.57 Aligned_cols=78 Identities=22% Similarity=0.155 Sum_probs=47.0
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHH----HHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEee
Q 024022 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRI----ILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYIL 147 (274)
Q Consensus 72 vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~----~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 147 (274)
.+..+||-.+..++..+- ++---.|++|...-..... .+..+|+++.+++...+. +. .++...++....|+
T Consensus 79 av~~~SG~aAi~~al~al-l~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~~~d~-~~---l~~~I~~~Tk~I~~ 153 (432)
T PRK06702 79 AVATASGQAAIMLAVLNI-CSSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNPNLTA-DE---IVALANDKTKLVYA 153 (432)
T ss_pred EEEECCHHHHHHHHHHHh-cCCCCEEEECCCchHHHHHHHHHHHHHCCCEEEEECCCCCH-HH---HHHhCCcCCeEEEE
Confidence 677889988888877653 3333466677654332233 268899999999753121 12 22222233367777
Q ss_pred CCCCCCc
Q 024022 148 GQFENPA 154 (274)
Q Consensus 148 ~~~~~~~ 154 (274)
....||.
T Consensus 154 e~pgnP~ 160 (432)
T PRK06702 154 ESLGNPA 160 (432)
T ss_pred EcCCCcc
Confidence 7667776
No 239
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=57.48 E-value=1.2e+02 Score=26.68 Aligned_cols=57 Identities=19% Similarity=0.199 Sum_probs=39.9
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHH-cCCeEEEEeCCCCCHHHHHHHHHCCCEEEEe
Q 024022 61 DKGLITPGKTVLIELTSGNTGIGLAFIAAS-RGYKLIIIMPSTYSIERRIILRALGAEVYLA 121 (274)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~-~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~ 121 (274)
+...+++|.+.+|.. .|-.|.+++..|+. +|.+.+.+.+ +..+.+.++.+|++.+.-
T Consensus 156 ~~~~~~~g~~vlV~g-~g~vG~~~~~la~~~~g~~v~~~~~---~~~~~~~~~~~g~~~v~~ 213 (338)
T PRK09422 156 KVSGIKPGQWIAIYG-AGGLGNLALQYAKNVFNAKVIAVDI---NDDKLALAKEVGADLTIN 213 (338)
T ss_pred HhcCCCCCCEEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC---ChHHHHHHHHcCCcEEec
Confidence 445577887756665 68889888888887 4987555533 346777788899865533
No 240
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=57.48 E-value=87 Score=26.06 Aligned_cols=56 Identities=18% Similarity=0.100 Sum_probs=37.2
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCH-HHHHHHHHCCCEEEEeCCC
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSI-ERRIILRALGAEVYLADPA 124 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~-~~~~~~~~~Ga~v~~~~~~ 124 (274)
.+.+|+..+|.-|.++|......|..++++....... .....++..+.++..+..+
T Consensus 4 ~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d 60 (250)
T TIGR03206 4 KTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGGNAQAFACD 60 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEEcC
Confidence 4568888899999999999888899877765432111 1123345567777665543
No 241
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=57.34 E-value=87 Score=26.31 Aligned_cols=56 Identities=18% Similarity=0.167 Sum_probs=36.9
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHCCCEEEEeCC
Q 024022 68 GKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLADP 123 (274)
Q Consensus 68 g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~~ 123 (274)
+.+.+|+..+|..|.++|......|.+++++-..... ..-...++..|.++..+..
T Consensus 11 ~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 67 (256)
T PRK06124 11 GQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGAAEALAF 67 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEc
Confidence 3566888888999999999888889987776554211 1223345566766655543
No 242
>PRK05867 short chain dehydrogenase; Provisional
Probab=57.24 E-value=96 Score=26.06 Aligned_cols=55 Identities=18% Similarity=0.071 Sum_probs=36.0
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHCCCEEEEeCC
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLADP 123 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~~ 123 (274)
.+.+|+..+|.-|.++|..-...|.+++++-..... +...+.++..|.++..+..
T Consensus 10 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~ 65 (253)
T PRK05867 10 KRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVCC 65 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEc
Confidence 456888888889999999988889987665443211 1123345556777765543
No 243
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=57.18 E-value=94 Score=25.79 Aligned_cols=55 Identities=15% Similarity=0.184 Sum_probs=38.0
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHCCCEEEEeCC
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLADP 123 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~~ 123 (274)
.+.+|+..+|..|.+++....+.|.+++++...... ....+.++..+.++..+..
T Consensus 7 ~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~ 62 (251)
T PRK12826 7 RVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQV 62 (251)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEC
Confidence 455788889999999999988889887776554211 2234456667777766554
No 244
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=57.17 E-value=1e+02 Score=27.30 Aligned_cols=58 Identities=24% Similarity=0.311 Sum_probs=39.8
Q ss_pred HHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 024022 60 EDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (274)
Q Consensus 60 ~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 120 (274)
.+...+.+|.+.+|. ..|..|.+++..|+.+|.+.++++.. +..+...++.+|++-+.
T Consensus 155 ~~~~~~~~g~~vlI~-g~g~vG~~a~~lak~~G~~~v~~~~~--~~~~~~~~~~~g~~~vi 212 (343)
T cd05285 155 CRRAGVRPGDTVLVF-GAGPIGLLTAAVAKAFGATKVVVTDI--DPSRLEFAKELGATHTV 212 (343)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEECC--CHHHHHHHHHcCCcEEe
Confidence 356677888876665 46778888888999999984444432 34566777778875443
No 245
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=57.10 E-value=1.3e+02 Score=27.14 Aligned_cols=54 Identities=22% Similarity=0.325 Sum_probs=39.6
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCE
Q 024022 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAE 117 (274)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~ 117 (274)
+...+.+|.+.+|. ..|..|.+++..|+.+|.+.++.+.. +..+.+.++.+|++
T Consensus 177 ~~~~~~~g~~vlI~-g~g~vG~~a~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~ 230 (365)
T cd05279 177 NTAKVTPGSTCAVF-GLGGVGLSVIMGCKAAGASRIIAVDI--NKDKFEKAKQLGAT 230 (365)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHhCCC
Confidence 34556777775555 67999999999999999886555443 55677777889984
No 246
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=57.10 E-value=1e+02 Score=27.14 Aligned_cols=55 Identities=29% Similarity=0.416 Sum_probs=40.1
Q ss_pred HHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCE
Q 024022 60 EDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAE 117 (274)
Q Consensus 60 ~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~ 117 (274)
.+...+.+|.+.+|.+ +|-.|.+++..|+.+|.+.++.+.. +..+...++.+|++
T Consensus 154 ~~~~~~~~g~~VlI~g-~g~vg~~~~~la~~~G~~~v~~~~~--~~~~~~~~~~~g~~ 208 (341)
T cd08262 154 VRRARLTPGEVALVIG-CGPIGLAVIAALKARGVGPIVASDF--SPERRALALAMGAD 208 (341)
T ss_pred HHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEECC--CHHHHHHHHHcCCc
Confidence 3455667777756664 6888888888999999886655543 56777788888874
No 247
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=57.02 E-value=1.6e+02 Score=26.95 Aligned_cols=81 Identities=12% Similarity=0.040 Sum_probs=44.4
Q ss_pred CCCCCCchhhHHHHHHHHHHHHcCC--CCCCCeEEEEeCCChHHHHHHHHHHH-cCCeEEEEeCCCCCHHHHHHHHHCCC
Q 024022 40 MMQPCSSVKDRIAYSMIKDAEDKGL--ITPGKTVLIELTSGNTGIGLAFIAAS-RGYKLIIIMPSTYSIERRIILRALGA 116 (274)
Q Consensus 40 ~~nptGS~K~R~a~~~~~~a~~~g~--~~~g~~~vv~~ssGN~g~alA~~a~~-~g~~~~i~~p~~~~~~~~~~~~~~Ga 116 (274)
+..+.|....|-+..... ...+. +.++...++.++++..|..++..+-. ..---.|+++.-+-..-...++.+|+
T Consensus 65 Y~~~~G~~~lR~aia~~~--~~~~~~~~~~~~i~v~iT~Ga~~al~~~~~~l~~~~pGd~Vlv~~P~y~~~~~~~~~~g~ 142 (396)
T PRK09257 65 YLPIEGLAAYRQAVQELL--FGADSPALAAGRVATVQTPGGTGALRVGADFLKRAFPDAKVWVSDPTWPNHRAIFEAAGL 142 (396)
T ss_pred cCCCCCCHHHHHHHHHHh--cCCCCcccccCeEEEEecCCccHHHHHHHHHHHHhCCCCeEEECCCCcccHHHHHHHcCC
Confidence 334567777775544322 22221 13332113666667777777753221 12113456666444455777888999
Q ss_pred EEEEeC
Q 024022 117 EVYLAD 122 (274)
Q Consensus 117 ~v~~~~ 122 (274)
+++.++
T Consensus 143 ~~v~v~ 148 (396)
T PRK09257 143 EVKTYP 148 (396)
T ss_pred cEEEEe
Confidence 999886
No 248
>PRK06194 hypothetical protein; Provisional
Probab=56.78 E-value=1.1e+02 Score=26.24 Aligned_cols=56 Identities=29% Similarity=0.272 Sum_probs=37.1
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHCCCEEEEeCCC
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLADPA 124 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~~~ 124 (274)
.+.+|+..+|.-|.++|....+.|.+++++-..... ......+...|.+++.+..+
T Consensus 7 k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 63 (287)
T PRK06194 7 KVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTD 63 (287)
T ss_pred CEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECC
Confidence 455888888999999999988889987665443111 12233445557788666543
No 249
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=56.60 E-value=1.2e+02 Score=26.84 Aligned_cols=49 Identities=18% Similarity=0.256 Sum_probs=33.6
Q ss_pred CCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEE
Q 024022 67 PGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (274)
Q Consensus 67 ~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 119 (274)
.+.+ ++.-..|+.|++++..++.+|.+++++-+. ..+....+.+|++.+
T Consensus 151 ~g~k-vlViG~G~iG~~~a~~L~~~Ga~V~v~~r~---~~~~~~~~~~G~~~~ 199 (296)
T PRK08306 151 HGSN-VLVLGFGRTGMTLARTLKALGANVTVGARK---SAHLARITEMGLSPF 199 (296)
T ss_pred CCCE-EEEECCcHHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHcCCeee
Confidence 3444 666777889999999999899866665443 344566667787653
No 250
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=56.42 E-value=70 Score=28.61 Aligned_cols=56 Identities=21% Similarity=0.233 Sum_probs=39.1
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCH--HHHHH----HHHCCCEEEEeCC
Q 024022 68 GKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSI--ERRII----LRALGAEVYLADP 123 (274)
Q Consensus 68 g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~--~~~~~----~~~~Ga~v~~~~~ 123 (274)
|.+-....-..|.+.|+-.+|.++|+++++..|+...+ .-++. .+..|++|..+..
T Consensus 153 g~k~a~vGDgNNv~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~t~d 214 (310)
T COG0078 153 GLKLAYVGDGNNVANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKESGGKITLTED 214 (310)
T ss_pred CcEEEEEcCcchHHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEEecC
Confidence 34533344557899999999999999999999985432 22222 2345899988863
No 251
>PRK06182 short chain dehydrogenase; Validated
Probab=56.27 E-value=1.3e+02 Score=25.68 Aligned_cols=67 Identities=19% Similarity=0.186 Sum_probs=43.7
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHH
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILN 139 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~ 139 (274)
.+.+|+..+|.-|.++|......|.+++++... ..+++.+...+.+++.++-. +.++..+...+..+
T Consensus 4 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~---~~~l~~~~~~~~~~~~~Dv~-~~~~~~~~~~~~~~ 70 (273)
T PRK06182 4 KVALVTGASSGIGKATARRLAAQGYTVYGAARR---VDKMEDLASLGVHPLSLDVT-DEASIKAAVDTIIA 70 (273)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHhCCCeEEEeeCC-CHHHHHHHHHHHHH
Confidence 455888888889999999988889988776553 24455555567777776643 23333333444433
No 252
>PLN02702 L-idonate 5-dehydrogenase
Probab=56.22 E-value=1.1e+02 Score=27.38 Aligned_cols=57 Identities=26% Similarity=0.362 Sum_probs=41.5
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 024022 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (274)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 120 (274)
+...+.+|.+.+|. ..|..|.++...++.+|.+.++.+.. +..|.+.++.+|++...
T Consensus 175 ~~~~~~~g~~vlI~-g~g~vG~~~~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~~~~ 231 (364)
T PLN02702 175 RRANIGPETNVLVM-GAGPIGLVTMLAARAFGAPRIVIVDV--DDERLSVAKQLGADEIV 231 (364)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEECC--CHHHHHHHHHhCCCEEE
Confidence 44456677775555 57889999999999999986655544 46777788889986654
No 253
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=56.16 E-value=99 Score=28.05 Aligned_cols=54 Identities=22% Similarity=0.319 Sum_probs=38.8
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCE
Q 024022 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAE 117 (274)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~ 117 (274)
+...+++|.+.+|. ..|..|.+++..|+.+|..-++++.. +..+.+.++.+|++
T Consensus 184 ~~~~~~~g~~VlV~-G~g~vG~~~~~~a~~~G~~~Vi~~~~--~~~~~~~a~~lGa~ 237 (373)
T cd08299 184 NTAKVTPGSTCAVF-GLGGVGLSAIMGCKAAGASRIIAVDI--NKDKFAKAKELGAT 237 (373)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEcC--CHHHHHHHHHcCCc
Confidence 44556777774555 67889999999999999854444433 44677778889984
No 254
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=56.04 E-value=26 Score=27.11 Aligned_cols=35 Identities=34% Similarity=0.469 Sum_probs=22.8
Q ss_pred CCCCCeEEEEeCCChHHH--HHHHHHHHcCCeEEEEe
Q 024022 65 ITPGKTVLIELTSGNTGI--GLAFIAASRGYKLIIIM 99 (274)
Q Consensus 65 ~~~g~~~vv~~ssGN~g~--alA~~a~~~g~~~~i~~ 99 (274)
++||+.-|+.++|||+.. ..+..|+..|++++.+.
T Consensus 101 ~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vIalT 137 (138)
T PF13580_consen 101 IRPGDVLIVISNSGNSPNVIEAAEEAKERGMKVIALT 137 (138)
T ss_dssp --TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 456677677778899875 45566999999998764
No 255
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=55.91 E-value=1.6e+02 Score=26.67 Aligned_cols=51 Identities=22% Similarity=0.305 Sum_probs=41.3
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHH-CCCEEEEeCC
Q 024022 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRA-LGAEVYLADP 123 (274)
Q Consensus 71 ~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~-~Ga~v~~~~~ 123 (274)
+++....|.-|...+..++.+|...+|+++. ++.|++..+. .|++++.-..
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~--~~~Rl~~A~~~~g~~~~~~~~ 222 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDR--SPERLELAKEAGGADVVVNPS 222 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCC--CHHHHHHHHHhCCCeEeecCc
Confidence 4888999999999999999999999998844 6677888876 6777666553
No 256
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=55.87 E-value=1.2e+02 Score=25.06 Aligned_cols=55 Identities=29% Similarity=0.263 Sum_probs=37.6
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHH-HHHHHHHCCCEEEEeCC
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIE-RRIILRALGAEVYLADP 123 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~-~~~~~~~~Ga~v~~~~~ 123 (274)
.+.+|+..+|..|..++......|..++++........ ....++..|.++..+..
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 61 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGGEARVLVF 61 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCCceEEEEc
Confidence 45588888999999999998888999655554422221 13445567888777553
No 257
>PRK05993 short chain dehydrogenase; Provisional
Probab=55.67 E-value=1.3e+02 Score=25.73 Aligned_cols=52 Identities=25% Similarity=0.252 Sum_probs=38.6
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCC
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 123 (274)
.+.+|+..+|..|.++|......|.+++++... ..+.+.+...|.+++.++-
T Consensus 5 k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~---~~~~~~l~~~~~~~~~~Dl 56 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQSDGWRVFATCRK---EEDVAALEAEGLEAFQLDY 56 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHCCceEEEccC
Confidence 455888888999999999988889987776543 3445566666777776664
No 258
>PRK08303 short chain dehydrogenase; Provisional
Probab=55.58 E-value=1.2e+02 Score=26.77 Aligned_cols=72 Identities=19% Similarity=0.099 Sum_probs=43.1
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC-----------CHHHHHHHHHCCCEEEEeCCCC-ChhHHHHHHHH
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTY-----------SIERRIILRALGAEVYLADPAV-GFEGFVKKGEE 136 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~-----------~~~~~~~~~~~Ga~v~~~~~~~-~~~~~~~~a~~ 136 (274)
.+.+|+..++--|.++|..-.+.|.+++++-.... -....+.++..|.+++.+..+- +.++..+...+
T Consensus 9 k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~ 88 (305)
T PRK08303 9 KVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRALVER 88 (305)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHH
Confidence 45578887777999999998889998777654311 0122345566787776554322 23344444444
Q ss_pred HHHh
Q 024022 137 ILNR 140 (274)
Q Consensus 137 ~~~~ 140 (274)
..+.
T Consensus 89 ~~~~ 92 (305)
T PRK08303 89 IDRE 92 (305)
T ss_pred HHHH
Confidence 4443
No 259
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=55.58 E-value=1.4e+02 Score=26.00 Aligned_cols=53 Identities=30% Similarity=0.357 Sum_probs=36.7
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHH-CCCE
Q 024022 62 KGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRA-LGAE 117 (274)
Q Consensus 62 ~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~-~Ga~ 117 (274)
.+.+.++.+.+|...+|..|.+++..|+++|.+.+++.+ +..+...++. +|++
T Consensus 140 ~~~~~~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~---~~~~~~~~~~~~g~~ 193 (329)
T cd05288 140 IGKPKPGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAG---SDEKCRWLVEELGFD 193 (329)
T ss_pred ccCCCCCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHhhcCCc
Confidence 345666766556556788999999999999997555443 3355666666 8874
No 260
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=55.53 E-value=46 Score=32.96 Aligned_cols=52 Identities=25% Similarity=0.346 Sum_probs=40.2
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC--------------C----HHHHHHHHHCCCEEEEe
Q 024022 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTY--------------S----IERRIILRALGAEVYLA 121 (274)
Q Consensus 70 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~--------------~----~~~~~~~~~~Ga~v~~~ 121 (274)
+.|+.-.+|-.|.+.|+..++.|.+++||-.... + ...++.++.+|.+++.-
T Consensus 311 kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~ 380 (639)
T PRK12809 311 EKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLN 380 (639)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcC
Confidence 3488899999999999999999999988854431 1 12466788899988654
No 261
>PRK05866 short chain dehydrogenase; Provisional
Probab=55.44 E-value=92 Score=27.21 Aligned_cols=54 Identities=15% Similarity=0.067 Sum_probs=35.7
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHCCCEEEEeCC
Q 024022 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLADP 123 (274)
Q Consensus 70 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~~ 123 (274)
+.+|+..+|.-|.++|......|.+++++...... ....+.+...|.++..+..
T Consensus 42 ~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~ 96 (293)
T PRK05866 42 RILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAMAVPC 96 (293)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEc
Confidence 55888888889999999988889988776654211 1122344445766655543
No 262
>PRK07035 short chain dehydrogenase; Provisional
Probab=55.33 E-value=1.1e+02 Score=25.59 Aligned_cols=54 Identities=19% Similarity=0.132 Sum_probs=35.8
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHCCCEEEEeC
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLAD 122 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~ 122 (274)
.+.+|+..+|.-|.+++....+.|.+++++-..... ....+.+...|.++..+.
T Consensus 9 k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~ 63 (252)
T PRK07035 9 KIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGGKAEALA 63 (252)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 355888888999999999988899987766543211 122334445676665554
No 263
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=55.30 E-value=98 Score=26.89 Aligned_cols=48 Identities=27% Similarity=0.340 Sum_probs=34.9
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEE
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 119 (274)
.+.+|...+|..|.+++..|+.+|.+++++.+ +..+.+.++.+|++-+
T Consensus 148 ~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~~ 195 (325)
T cd05280 148 GPVLVTGATGGVGSIAVAILAKLGYTVVALTG---KEEQADYLKSLGASEV 195 (325)
T ss_pred CEEEEECCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHhcCCcEE
Confidence 45455556799999999999999998544433 3467777788998544
No 264
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=55.12 E-value=1.3e+02 Score=28.87 Aligned_cols=86 Identities=19% Similarity=0.186 Sum_probs=46.5
Q ss_pred chhhHHHHHHHHHHHHcCCCCCCCeEEEEe-CCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCC
Q 024022 46 SVKDRIAYSMIKDAEDKGLITPGKTVLIEL-TSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPA 124 (274)
Q Consensus 46 S~K~R~a~~~~~~a~~~g~~~~g~~~vv~~-ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~ 124 (274)
++++..+...+..|.+.+. .. +|++ .||.+++.+|.+ +-..+.+++.+.. ..-.+..-.+|..-+.++..
T Consensus 358 ~~~~aia~sAv~~A~~l~a----ka-IVv~T~SG~TA~~lS~~--RP~~pIiavT~~~--~~~r~l~l~~GV~p~~~~~~ 428 (480)
T cd00288 358 STTEAVAMSAVRAAFELGA----KA-IVVLTTSGRTARLVSKY--RPNAPIIAVTRNE--QTARQLHLYRGVYPVLFEEP 428 (480)
T ss_pred ChHHHHHHHHHHHHHhcCC----CE-EEEECCCcHHHHHHHhh--CCCCCEEEEcCCH--HHhhheeeccCcEEEEeccc
Confidence 3566666666666666653 34 4444 668888766654 4457777777762 11122222357766665532
Q ss_pred -----CChhHHHHHHHHHHHh
Q 024022 125 -----VGFEGFVKKGEEILNR 140 (274)
Q Consensus 125 -----~~~~~~~~~a~~~~~~ 140 (274)
.+.++.+..+.+.+++
T Consensus 429 ~~~~~~~~~~~~~~~~~~~~~ 449 (480)
T cd00288 429 KPGWQEDTDARLKAAVNVAKE 449 (480)
T ss_pred ccccCCCHHHHHHHHHHHHHH
Confidence 2233444445444444
No 265
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=54.74 E-value=60 Score=25.93 Aligned_cols=50 Identities=28% Similarity=0.256 Sum_probs=39.8
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCC
Q 024022 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (274)
Q Consensus 71 ~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 123 (274)
.++....||.|.+.+..+..+|.+.+++- ....+.+.++..++..+.++.
T Consensus 22 ~vvv~G~G~vg~gA~~~~~~lGa~v~~~d---~~~~~~~~~~~~~~~~i~~~~ 71 (168)
T PF01262_consen 22 KVVVTGAGRVGQGAAEIAKGLGAEVVVPD---ERPERLRQLESLGAYFIEVDY 71 (168)
T ss_dssp EEEEESTSHHHHHHHHHHHHTT-EEEEEE---SSHHHHHHHHHTTTEESEETT
T ss_pred EEEEECCCHHHHHHHHHHhHCCCEEEecc---CCHHHHHhhhcccCceEEEcc
Confidence 37888899999999999999999866553 245677888899998888853
No 266
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=54.65 E-value=85 Score=27.45 Aligned_cols=49 Identities=35% Similarity=0.458 Sum_probs=34.2
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCC
Q 024022 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGA 116 (274)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga 116 (274)
+...+++|.+.+|...+|..|.+++..|+.+|.+++++. +.+.++.+|+
T Consensus 156 ~~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G~~v~~~~-------~~~~~~~~g~ 204 (325)
T cd08264 156 KTAGLGPGETVVVFGASGNTGIFAVQLAKMMGAEVIAVS-------RKDWLKEFGA 204 (325)
T ss_pred HhcCCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEe-------HHHHHHHhCC
Confidence 335567777756655679999999999999999865543 1244455665
No 267
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=54.54 E-value=1.6e+02 Score=26.29 Aligned_cols=74 Identities=24% Similarity=0.259 Sum_probs=49.9
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeC-CCCCHHHHHHHHHCC-CEEEEeCCCCChhHHHHHHHHHHHhCC
Q 024022 68 GKTVLIELTSGNTGIGLAFIAASRGYKLIIIMP-STYSIERRIILRALG-AEVYLADPAVGFEGFVKKGEEILNRTP 142 (274)
Q Consensus 68 g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p-~~~~~~~~~~~~~~G-a~v~~~~~~~~~~~~~~~a~~~~~~~~ 142 (274)
|+..+||.+++-.|+++|.--++.|-+.++.=- .....+..+.++..| ++-+.|+-+ ++++..+.+.+.-++.+
T Consensus 38 g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis-~~eei~~~a~~Vk~e~G 113 (300)
T KOG1201|consen 38 GEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDIS-DREEIYRLAKKVKKEVG 113 (300)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcCceeEEEecCC-CHHHHHHHHHHHHHhcC
Confidence 456677887777999999998888874433322 233456677777777 344556654 46778888888877764
No 268
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=54.49 E-value=1.1e+02 Score=29.91 Aligned_cols=49 Identities=24% Similarity=0.233 Sum_probs=32.5
Q ss_pred eEEEEeCCChHH---HHHHHHHHHcCCeEEEEeCCCCCHH----HHHHHHHCCCEE
Q 024022 70 TVLIELTSGNTG---IGLAFIAASRGYKLIIIMPSTYSIE----RRIILRALGAEV 118 (274)
Q Consensus 70 ~~vv~~ssGN~g---~alA~~a~~~g~~~~i~~p~~~~~~----~~~~~~~~Ga~v 118 (274)
+.+|.+..||.| ..+|......|.++.|+++...... ..++++.+|..+
T Consensus 137 ~VlVlcGpGNNGGDGLVaAR~L~~~G~~V~V~~~~~~~~~~~~~~~~~~~~~gi~~ 192 (544)
T PLN02918 137 RVLAICGPGNNGGDGLVAARHLHHFGYKPFVCYPKRTAKPLYTGLVTQLESLSVPF 192 (544)
T ss_pred EEEEEECCCcCHHHHHHHHHHHHHCCCceEEEEcCCCCcHHHHHHHHHHHHcCCCe
Confidence 457778888876 4555556667999999997643332 234566677654
No 269
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=54.38 E-value=1.3e+02 Score=27.86 Aligned_cols=128 Identities=14% Similarity=0.104 Sum_probs=71.6
Q ss_pred CCchhhHHHHHHHHHHH----HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEE
Q 024022 44 CSSVKDRIAYSMIKDAE----DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (274)
Q Consensus 44 tGS~K~R~a~~~~~~a~----~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 119 (274)
.|.+..-.|.+.+..+. +.|....|.+ |..-..||-|..+|..++.+|+++..+=|..... +....
T Consensus 88 pg~na~aVAE~~~~~lL~l~r~~g~~L~gkt-vGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~~---------~~~~~ 157 (378)
T PRK15438 88 PGCNAIAVVEYVFSSLLMLAERDGFSLHDRT-VGIVGVGNVGRRLQARLEALGIKTLLCDPPRADR---------GDEGD 157 (378)
T ss_pred CCcCchHHHHHHHHHHHHHhccCCCCcCCCE-EEEECcCHHHHHHHHHHHHCCCEEEEECCccccc---------ccccc
Confidence 35556666666665433 3343334444 7778889999999999999999988875431100 11000
Q ss_pred EeCCCCChhHHHHHHHHHHHhCCCeEee-CCCCCCcchHhhhhchHHHHHHhhCCCCCEEEEecCCcccHH--HHHHHHH
Q 024022 120 LADPAVGFEGFVKKGEEILNRTPNGYIL-GQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGGTVT--GAGRFLK 196 (274)
Q Consensus 120 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~iv~~vG~Gg~~~--Gi~~~~k 196 (274)
+. ...++.++- +...+ -+....... .-+.-+..+.+.++ +++.+++=+|-|+.+- .+..+++
T Consensus 158 -------~~----~L~ell~~s-DiI~lh~PLt~~g~~-~T~~li~~~~l~~m--k~gailIN~aRG~vVDe~AL~~aL~ 222 (378)
T PRK15438 158 -------FR----SLDELVQEA-DILTFHTPLFKDGPY-KTLHLADEKLIRSL--KPGAILINACRGAVVDNTALLTCLN 222 (378)
T ss_pred -------cC----CHHHHHhhC-CEEEEeCCCCCCccc-ccccccCHHHHhcC--CCCcEEEECCCchhcCHHHHHHHHH
Confidence 11 122333333 33332 222111111 12344667888888 4689999999998864 3444444
No 270
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=54.33 E-value=75 Score=27.63 Aligned_cols=54 Identities=15% Similarity=-0.040 Sum_probs=39.7
Q ss_pred hhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 024022 48 KDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPS 101 (274)
Q Consensus 48 K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~ 101 (274)
=-||..+.+..+.+........++++....||-|..+|.....+|.+++.+...
T Consensus 17 Tg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~ 70 (254)
T cd05313 17 TGYGLVYFVEEMLKDRNETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDS 70 (254)
T ss_pred hHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 346777777776554333332345999999999999999999988888877663
No 271
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=54.32 E-value=26 Score=28.53 Aligned_cols=43 Identities=28% Similarity=0.353 Sum_probs=31.6
Q ss_pred hhchHHHHHHhhCCCCCEEEEecCCcccHHHHHHHHHhhCCCcEEEEEe
Q 024022 160 YETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIE 208 (274)
Q Consensus 160 ~~t~~~Ei~~q~~~~~d~iv~~vG~Gg~~~Gi~~~~k~~~~~~~vigve 208 (274)
...++.++.+| +-.||.|+.-.|=|-++ .+|+.+|+.++++-.
T Consensus 53 v~~a~~~L~~~-Gf~PDvI~~H~GWGe~L-----flkdv~P~a~li~Y~ 95 (171)
T PF12000_consen 53 VARAARQLRAQ-GFVPDVIIAHPGWGETL-----FLKDVFPDAPLIGYF 95 (171)
T ss_pred HHHHHHHHHHc-CCCCCEEEEcCCcchhh-----hHHHhCCCCcEEEEE
Confidence 34445555555 45699998888877654 899999999999874
No 272
>PRK06949 short chain dehydrogenase; Provisional
Probab=54.05 E-value=96 Score=26.00 Aligned_cols=33 Identities=24% Similarity=0.312 Sum_probs=27.0
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPS 101 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~ 101 (274)
.+.+|+..+|.-|.++|....+.|.+++++...
T Consensus 10 k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~ 42 (258)
T PRK06949 10 KVALVTGASSGLGARFAQVLAQAGAKVVLASRR 42 (258)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 566888889999999999998899987666553
No 273
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=53.81 E-value=1.4e+02 Score=25.44 Aligned_cols=56 Identities=30% Similarity=0.402 Sum_probs=39.0
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 024022 62 KGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (274)
Q Consensus 62 ~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 120 (274)
.+.+.+|.+.+|...+|..|.+++..++.+|.+.+++.. +..+.+.++.+|++-+.
T Consensus 131 ~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~~~ 186 (320)
T cd05286 131 TYPVKPGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVS---SEEKAELARAAGADHVI 186 (320)
T ss_pred hcCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcC---CHHHHHHHHHCCCCEEE
Confidence 355667777556556788999999999999988655432 44566667778874443
No 274
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=53.73 E-value=1.3e+02 Score=25.01 Aligned_cols=55 Identities=13% Similarity=0.169 Sum_probs=37.9
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC--HHHHHHHHHCCCEEEEeCC
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS--IERRIILRALGAEVYLADP 123 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~--~~~~~~~~~~Ga~v~~~~~ 123 (274)
.+.+|+..+|.-|.++|......|.+++++...... ......++..|.+++....
T Consensus 4 k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (246)
T PRK12938 4 RIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNSPRRVKWLEDQKALGFDFIASEG 60 (246)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHhcCCcEEEEEc
Confidence 455888899999999999998899887765543221 1224455667888765543
No 275
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=53.67 E-value=1.4e+02 Score=25.50 Aligned_cols=54 Identities=28% Similarity=0.324 Sum_probs=38.2
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEE
Q 024022 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (274)
Q Consensus 63 g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 119 (274)
+.+.+|.+.+|...+|..|.+++..++.+|.+.++..+. ..+.+.++.+|++-+
T Consensus 140 ~~~~~g~~vlI~g~~~~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~~ 193 (325)
T cd08253 140 AGAKAGETVLVHGGSGAVGHAAVQLARWAGARVIATASS---AEGAELVRQAGADAV 193 (325)
T ss_pred hCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHHcCCCEE
Confidence 556667776666667889999999999999886555443 355666667777543
No 276
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=53.60 E-value=1.4e+02 Score=25.26 Aligned_cols=68 Identities=16% Similarity=0.118 Sum_probs=42.8
Q ss_pred HHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCC
Q 024022 52 AYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPA 124 (274)
Q Consensus 52 a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~ 124 (274)
+..+...+.+.|. ...=|+.+|=-...++...++.+. ++.|=.-.-.+....++....||+++..++-
T Consensus 27 a~~~a~Ali~gGi----~~IEITl~sp~a~e~I~~l~~~~p-~~lIGAGTVL~~~q~~~a~~aGa~fiVsP~~ 94 (211)
T COG0800 27 ALPLAKALIEGGI----PAIEITLRTPAALEAIRALAKEFP-EALIGAGTVLNPEQARQAIAAGAQFIVSPGL 94 (211)
T ss_pred HHHHHHHHHHcCC----CeEEEecCCCCHHHHHHHHHHhCc-ccEEccccccCHHHHHHHHHcCCCEEECCCC
Confidence 3444444555554 232345566667777777788777 4444333344677788888888888888753
No 277
>PRK07677 short chain dehydrogenase; Provisional
Probab=53.55 E-value=1.1e+02 Score=25.59 Aligned_cols=55 Identities=20% Similarity=0.201 Sum_probs=35.1
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHCCCEEEEeCC
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLADP 123 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~~ 123 (274)
++.+|+..+|.-|.++|......|..++++...... ......++..+.+++.+..
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 57 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFPGQVLTVQM 57 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEe
Confidence 355788888889999999988899976665443211 1122234445666665543
No 278
>PRK07806 short chain dehydrogenase; Provisional
Probab=53.53 E-value=1.3e+02 Score=25.01 Aligned_cols=55 Identities=20% Similarity=0.171 Sum_probs=36.8
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCH--HHHHHHHHCCCEEEEeCC
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSI--ERRIILRALGAEVYLADP 123 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~--~~~~~~~~~Ga~v~~~~~ 123 (274)
.+.+|+..+|.-|.+++......|.+++++....... .-...++..|.++..+..
T Consensus 7 k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~ 63 (248)
T PRK07806 7 KTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGA 63 (248)
T ss_pred cEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEc
Confidence 4557888888899999999888899987766532111 112334556777765543
No 279
>PRK12828 short chain dehydrogenase; Provisional
Probab=53.50 E-value=1.2e+02 Score=24.76 Aligned_cols=55 Identities=22% Similarity=0.068 Sum_probs=38.5
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHCCCEEEEeCC
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLADP 123 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~~ 123 (274)
.+.+|+.++|--|.+++....+.|.+++++.....+ ......+...+.+++.++-
T Consensus 8 k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~ 63 (239)
T PRK12828 8 KVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPADALRIGGIDL 63 (239)
T ss_pred CEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhhcCceEEEeec
Confidence 466888899999999999888889997766654221 1223445566777777664
No 280
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=53.40 E-value=1.1e+02 Score=26.39 Aligned_cols=70 Identities=14% Similarity=0.189 Sum_probs=35.0
Q ss_pred HHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhchHHHHHHhhC-CCCCEEEEecCCc
Q 024022 108 RIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSG-GKVDAFIAGIGTG 185 (274)
Q Consensus 108 ~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~-~~~d~iv~~vG~G 185 (274)
++.....|-+|.++++.. ....+.++.+.++. +.-.+...+-+...+ - ..+|.+++. ..+|.++|+.|+-
T Consensus 98 l~~~~~~~~~v~llG~~~--~v~~~a~~~l~~~y-~l~i~g~~~Gyf~~~-e----~~~i~~~I~~s~~dil~VglG~P 168 (243)
T PRK03692 98 MARAGKEGTPVFLVGGKP--EVLAQTEAKLRTQW-NVNIVGSQDGYFTPE-Q----RQALFERIHASGAKIVTVAMGSP 168 (243)
T ss_pred HHHHHhcCCeEEEECCCH--HHHHHHHHHHHHHh-CCEEEEEeCCCCCHH-H----HHHHHHHHHhcCCCEEEEECCCc
Confidence 334456788999998642 22333344444444 322221111111221 1 123455543 2589999999864
No 281
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=53.33 E-value=1.3e+02 Score=25.25 Aligned_cols=55 Identities=25% Similarity=0.109 Sum_probs=35.9
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHCCCEEEEeCC
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLADP 123 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~~ 123 (274)
.+.+|+..+|..|.++|....+.|.+++++-..... ......++..+.++..+..
T Consensus 10 k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~ 65 (254)
T PRK08085 10 KNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGIKAHAAPF 65 (254)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEec
Confidence 456888888999999999988889877765433111 1122344555767665543
No 282
>PRK07814 short chain dehydrogenase; Provisional
Probab=53.31 E-value=1.1e+02 Score=25.96 Aligned_cols=54 Identities=17% Similarity=0.196 Sum_probs=34.9
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHCCCEEEEeC
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLAD 122 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~ 122 (274)
.+.+|+..+|--|.++|......|.+++++...... ......++..|.++..+.
T Consensus 11 ~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~ 65 (263)
T PRK07814 11 QVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGRRAHVVA 65 (263)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 466888888889999999888889987766553211 111233444566665543
No 283
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=52.98 E-value=1.3e+02 Score=25.18 Aligned_cols=53 Identities=15% Similarity=0.135 Sum_probs=36.2
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHCCCEEEEeCC
Q 024022 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLADP 123 (274)
Q Consensus 71 ~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~~ 123 (274)
.+|+..+|.-|.++|......|.+++++-..... ....+.++..|.++..+..
T Consensus 3 ~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~ 56 (254)
T TIGR02415 3 ALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGGKAVAYKL 56 (254)
T ss_pred EEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEc
Confidence 4788888999999999988899987666543211 1223455667877766554
No 284
>COG0623 FabI Enoyl-[acyl-carrier-protein]
Probab=52.94 E-value=83 Score=27.15 Aligned_cols=28 Identities=36% Similarity=0.452 Sum_probs=12.4
Q ss_pred CCeEEEEeCCChHHHH--HHHHHHHcCCeE
Q 024022 68 GKTVLIELTSGNTGIG--LAFIAASRGYKL 95 (274)
Q Consensus 68 g~~~vv~~ssGN~g~a--lA~~a~~~g~~~ 95 (274)
|++.+|..-.-|..+| +|-.++..|-+.
T Consensus 6 GK~~lI~Gvan~rSIAwGIAk~l~~~GAeL 35 (259)
T COG0623 6 GKRILIMGVANNRSIAWGIAKALAEQGAEL 35 (259)
T ss_pred CceEEEEEecccccHHHHHHHHHHHcCCEE
Confidence 3455665544444433 333344444443
No 285
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=52.71 E-value=1.4e+02 Score=31.41 Aligned_cols=31 Identities=16% Similarity=0.115 Sum_probs=27.9
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 024022 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPS 101 (274)
Q Consensus 71 ~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~ 101 (274)
.|+.-.+|..|.+.|...++.|++++||=..
T Consensus 432 kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~ 462 (1006)
T PRK12775 432 KVAICGSGPAGLAAAADLVKYGVDVTVYEAL 462 (1006)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCcEEEEecC
Confidence 4888999999999999999999999998644
No 286
>cd01011 nicotinamidase Nicotinamidase/pyrazinamidase (PZase). Nicotinamidase, a ubiquitous enzyme in prokaryotes, converts nicotinamide to nicotinic acid (niacin) and ammonia, which in turn can be recycled to make nicotinamide adenine dinucleotide (NAD). The same enzyme is also called pyrazinamidase, because in converts the tuberculosis drug pyrazinamide (PZA) into its active form pyrazinoic acid (POA).
Probab=52.68 E-value=85 Score=25.79 Aligned_cols=62 Identities=10% Similarity=0.144 Sum_probs=39.9
Q ss_pred HHHHHHHHcCCCCCCCeEEEEeCCChHHH-HHHHHHHHcCCeEEEEeCCCCC------HHHHHHHHHCCCEEE
Q 024022 54 SMIKDAEDKGLITPGKTVLIELTSGNTGI-GLAFIAASRGYKLIIIMPSTYS------IERRIILRALGAEVY 119 (274)
Q Consensus 54 ~~~~~a~~~g~~~~g~~~vv~~ssGN~g~-alA~~a~~~g~~~~i~~p~~~~------~~~~~~~~~~Ga~v~ 119 (274)
.+...+.+.|. ++-+|+.-..|.+. +.|.-|...|++++++.....+ ..-++.|+..|++|+
T Consensus 128 ~L~~~L~~~~i----~~lii~G~~t~~CV~~T~~~a~~~g~~v~v~~Da~~~~~~~~~~~al~~~~~~G~~i~ 196 (196)
T cd01011 128 GLAEYLRERGI----DRVDVVGLATDYCVKATALDALKAGFEVRVLEDACRAVDPETIERAIEEMKEAGVVLV 196 (196)
T ss_pred hHHHHHHHCCC----CEEEEEEecccHHHHHHHHHHHHCCCEEEEeccccCCCCHHHHHHHHHHHHHccCEEC
Confidence 34444455665 55566667777775 5566688889998888875332 223666777788763
No 287
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=52.61 E-value=1.4e+02 Score=27.28 Aligned_cols=52 Identities=23% Similarity=0.298 Sum_probs=34.9
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCC
Q 024022 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (274)
Q Consensus 72 vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 123 (274)
.+..++|..|..+|..+-..+-.-.|++|..+-......+..+|++++.++-
T Consensus 51 ~v~~~sgt~al~lal~al~~~~Gd~Viv~~~~~~~~~~~~~~~G~~~v~vd~ 102 (379)
T PRK11658 51 AIAVSSATAGMHITLMALGIGPGDEVITPSLTWVSTLNMIVLLGATPVMVDV 102 (379)
T ss_pred EEEECCHHHHHHHHHHHcCCCCCCEEEECCCcHHHHHHHHHHcCCEEEEEec
Confidence 5666777776666654432222346777776666667778889999999874
No 288
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=52.60 E-value=1.4e+02 Score=26.49 Aligned_cols=54 Identities=39% Similarity=0.506 Sum_probs=39.4
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHH-HHHHHCCC-E-EEEeC
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERR-IILRALGA-E-VYLAD 122 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~-~~~~~~Ga-~-v~~~~ 122 (274)
+..+||..|+--|.++|+.-.+.|.+.++++...-...++ +.++..++ + ++...
T Consensus 13 kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~ 69 (282)
T KOG1205|consen 13 KVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQ 69 (282)
T ss_pred CEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEe
Confidence 4557777666699999999999999999999876555555 66665544 4 55554
No 289
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=52.26 E-value=1.7e+02 Score=25.81 Aligned_cols=53 Identities=34% Similarity=0.547 Sum_probs=38.0
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCE
Q 024022 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAE 117 (274)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~ 117 (274)
+...+.+|.+.+|. .+|..|.+++..|+.+|+++++... +..+...++.+|++
T Consensus 153 ~~~~l~~g~~vLI~-g~g~vG~~a~~lA~~~g~~v~~~~~---s~~~~~~~~~~g~~ 205 (337)
T cd08261 153 RRAGVTAGDTVLVV-GAGPIGLGVIQVAKARGARVIVVDI---DDERLEFARELGAD 205 (337)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCeEEEECC---CHHHHHHHHHhCCC
Confidence 44566777775555 5677899999999999998665533 35667777778864
No 290
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=52.20 E-value=1.7e+02 Score=25.87 Aligned_cols=51 Identities=25% Similarity=0.433 Sum_probs=36.4
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCC
Q 024022 62 KGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGA 116 (274)
Q Consensus 62 ~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga 116 (274)
...+.++.+.+|.. .|..|.+++..|+.+|++.+++.. +..+.+.++.+|+
T Consensus 160 ~~~~~~~~~vlV~g-~g~vg~~~~~~a~~~G~~vi~~~~---~~~~~~~~~~~g~ 210 (345)
T cd08260 160 QARVKPGEWVAVHG-CGGVGLSAVMIASALGARVIAVDI---DDDKLELARELGA 210 (345)
T ss_pred ccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEEeC---CHHHHHHHHHhCC
Confidence 44466677756665 788999999999999998665544 3456666677887
No 291
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=52.18 E-value=1.2e+02 Score=26.95 Aligned_cols=52 Identities=23% Similarity=0.265 Sum_probs=36.9
Q ss_pred CCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 024022 65 ITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (274)
Q Consensus 65 ~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 120 (274)
+.+|.+.+|. ..|..|.+++..|+.+|++.+++.+. ..+.+.++.+|++-+.
T Consensus 167 ~~~g~~vlV~-g~g~vG~~~~~~a~~~G~~v~~~~~~---~~~~~~~~~~g~~~vi 218 (337)
T cd05283 167 VGPGKRVGVV-GIGGLGHLAVKFAKALGAEVTAFSRS---PSKKEDALKLGADEFI 218 (337)
T ss_pred CCCCCEEEEE-CCcHHHHHHHHHHHHcCCeEEEEcCC---HHHHHHHHHcCCcEEe
Confidence 5677775664 47889999999999999976555433 3566667778876543
No 292
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=52.14 E-value=1.1e+02 Score=26.76 Aligned_cols=50 Identities=24% Similarity=0.245 Sum_probs=35.2
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHc-CCeEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 024022 68 GKTVLIELTSGNTGIGLAFIAASR-GYKLIIIMPSTYSIERRIILRALGAEVYL 120 (274)
Q Consensus 68 g~~~vv~~ssGN~g~alA~~a~~~-g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 120 (274)
|.+.+|...+|..|.+++..|+.+ |.+++.+... ..+.+.++.+|++-+.
T Consensus 149 g~~vlV~ga~g~vg~~~~~~ak~~~G~~vi~~~~~---~~~~~~l~~~g~~~~~ 199 (336)
T TIGR02817 149 KRALLIIGGAGGVGSILIQLARQLTGLTVIATASR---PESQEWVLELGAHHVI 199 (336)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHhCCCEEEEEcCc---HHHHHHHHHcCCCEEE
Confidence 666556666788999988889987 8886655443 3566777778885443
No 293
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase. This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).
Probab=52.09 E-value=76 Score=29.07 Aligned_cols=54 Identities=17% Similarity=0.095 Sum_probs=35.9
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCC
Q 024022 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPA 124 (274)
Q Consensus 71 ~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~ 124 (274)
.++..++|..+..+++.+-..+-.-.|++|..+-......+...|++++.++.+
T Consensus 48 ~~v~~~sgt~aL~~~l~al~~~pGd~Viv~~~t~~~~~~~~~~~G~~~v~vd~d 101 (376)
T TIGR02379 48 KALLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDIR 101 (376)
T ss_pred eEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHHHHcCCEEEEEecC
Confidence 377777776666555544322223457777766666677778899999999754
No 294
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=51.97 E-value=1.5e+02 Score=25.08 Aligned_cols=54 Identities=20% Similarity=0.146 Sum_probs=38.0
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCH--HHHHHHHHCCCEEEEeC
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSI--ERRIILRALGAEVYLAD 122 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~--~~~~~~~~~Ga~v~~~~ 122 (274)
.+.+|+..+|.-|.++|....+.|.++++......+. ...+.++..|.++..+.
T Consensus 8 k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~ 63 (261)
T PRK08936 8 KVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEIKKAGGEAIAVK 63 (261)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEE
Confidence 4568888889899999999889999887766543222 22345566788876554
No 295
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=51.80 E-value=1.8e+02 Score=26.08 Aligned_cols=54 Identities=26% Similarity=0.338 Sum_probs=36.8
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCE
Q 024022 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAE 117 (274)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~ 117 (274)
+...+.++.+.+|. ..|..|.+++..|+.+|.+.++++.. +..+.+.++.+|++
T Consensus 176 ~~~~~~~g~~vLI~-g~g~vG~a~i~lak~~G~~~Vi~~~~--~~~~~~~~~~~g~~ 229 (363)
T cd08279 176 NTARVRPGDTVAVI-GCGGVGLNAIQGARIAGASRIIAVDP--VPEKLELARRFGAT 229 (363)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCcEEEEcC--CHHHHHHHHHhCCe
Confidence 34456677775665 56889999999999999874444433 44556666778874
No 296
>cd08251 polyketide_synthase polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a
Probab=51.76 E-value=1.5e+02 Score=25.16 Aligned_cols=54 Identities=22% Similarity=0.373 Sum_probs=39.4
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCE
Q 024022 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAE 117 (274)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~ 117 (274)
+.+.+.+|.+.++...+|..|.+++..++.+|++.+.+.+. ..+.+.++.+|++
T Consensus 114 ~~~~~~~g~~vli~~~~~~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~ 167 (303)
T cd08251 114 ARAGLAKGEHILIQTATGGTGLMAVQLARLKGAEIYATASS---DDKLEYLKQLGVP 167 (303)
T ss_pred HhcCCCCCCEEEEecCCcHHHHHHHHHHHHcCCEEEEEcCC---HHHHHHHHHcCCC
Confidence 45667787775665678889999999999999985555443 3566667778874
No 297
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=51.74 E-value=1.9e+02 Score=26.94 Aligned_cols=57 Identities=16% Similarity=0.206 Sum_probs=39.1
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCC
Q 024022 68 GKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPA 124 (274)
Q Consensus 68 g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~ 124 (274)
+.+.+|+..+|..|.++|....+.|.+++++-.........+.....+++++.++-.
T Consensus 210 g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv~ 266 (450)
T PRK08261 210 GKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAAGEALAAVANRVGGTALALDIT 266 (450)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHHHHHcCCeEEEEeCC
Confidence 356688888899999999998889998777654322222233344567777777643
No 298
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=51.62 E-value=1.3e+02 Score=25.29 Aligned_cols=56 Identities=21% Similarity=0.236 Sum_probs=36.3
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHCCCEEEEeCCC
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLADPA 124 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~~~ 124 (274)
.+.+|+..+|--|.++|......|.+++++...... +.....++..+.++..+..+
T Consensus 13 k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D 69 (259)
T PRK08213 13 KTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGIDALWIAAD 69 (259)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 456888888889999998888889987655443211 11123345667777666543
No 299
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=51.29 E-value=2e+02 Score=26.77 Aligned_cols=127 Identities=19% Similarity=0.240 Sum_probs=65.8
Q ss_pred EEEeCCCh-HHHHHHHHHHHcCCeEEEEeCC-CCC----HHHHHHHHHCCC-EEEEeCCCCChhHHHHHHHHHHHhCCCe
Q 024022 72 LIELTSGN-TGIGLAFIAASRGYKLIIIMPS-TYS----IERRIILRALGA-EVYLADPAVGFEGFVKKGEEILNRTPNG 144 (274)
Q Consensus 72 vv~~ssGN-~g~alA~~a~~~g~~~~i~~p~-~~~----~~~~~~~~~~Ga-~v~~~~~~~~~~~~~~~a~~~~~~~~~~ 144 (274)
|+.+|.|= +...+.+...+.+.+++.|.-+ ..+ ..-.+....+|| +++.++....| +.+.+....+. +.
T Consensus 1 VLAySGGLDTS~~l~~L~e~~~~~Via~~aDlGq~~~d~~~i~~kA~~~Ga~~~~vvD~r~ef--~~~~i~~aI~a--nA 76 (388)
T PF00764_consen 1 VLAYSGGLDTSVILKWLKEEGGYEVIAVTADLGQPDEDLEAIEEKALKLGASKHIVVDARDEF--AEDYIFPAIKA--NA 76 (388)
T ss_dssp EEE--SSHHHHHHHHHHHHTTTEEEEEEEEESSST-S-HHHHHHHHHHHT-SEEEEEE-HHHH--HHHTHHHHHHT--T-
T ss_pred CeeeCCChHHHHHHHHHHhhcCceEEEEEEECCCcHHHHHHHHHHHHhcCCceeeecchHHHH--HHHHHHHHHHH--HH
Confidence 34556653 3444555566666898888754 222 222334567899 99999843111 11222222222 34
Q ss_pred EeeCCCC---CCcchHhhhhchHHHHHHhhCCCCCEEEEe-cCCcccHHHHHHHHHhhCCCcEEEE
Q 024022 145 YILGQFE---NPANPEIHYETTGPEIWNDSGGKVDAFIAG-IGTGGTVTGAGRFLKEKNPNIKVYG 206 (274)
Q Consensus 145 ~~~~~~~---~~~~~~~g~~t~~~Ei~~q~~~~~d~iv~~-vG~Gg~~~Gi~~~~k~~~~~~~vig 206 (274)
.|...|- ...++. -.....|++++. ..++|.-. .|.|--..=+-.+++.+.|+.+|++
T Consensus 77 ~Yeg~YpL~tsl~Rpl--Ia~~~v~~A~~~--ga~~vaHG~TgkGNDqvRFe~~~~al~P~l~via 138 (388)
T PF00764_consen 77 LYEGRYPLSTSLARPL--IAKKLVEVAREE--GADAVAHGCTGKGNDQVRFELSIRALAPELKVIA 138 (388)
T ss_dssp -BTTTB--CCCCHHHH--HHHHHHHHHHHH--T-SEEE----TTSSHHHHHHHHHHHHSTTSEEE-
T ss_pred HhCCCccccccchHHH--HHHHHHHHHHHc--CCeEEeccCCcCCCchhHHHHHHHHhCcCCcEec
Confidence 4443331 222222 233344666666 36788874 5778888888888999999999874
No 300
>PRK12831 putative oxidoreductase; Provisional
Probab=51.25 E-value=79 Score=29.93 Aligned_cols=51 Identities=18% Similarity=0.159 Sum_probs=38.8
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCC---C--CHHHHHHHHHCCCEEEEe
Q 024022 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPST---Y--SIERRIILRALGAEVYLA 121 (274)
Q Consensus 71 ~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~---~--~~~~~~~~~~~Ga~v~~~ 121 (274)
.|+.-.+||.|.-+|..+.++|.+++++.... . ....++.++..|.+++.-
T Consensus 283 ~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~~~e~~~a~~eGV~i~~~ 338 (464)
T PRK12831 283 KVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPARVEEVHHAKEEGVIFDLL 338 (464)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHHcCCEEEec
Confidence 48889999999999999999999988887642 1 223445566778887644
No 301
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=51.14 E-value=1.5e+02 Score=24.83 Aligned_cols=54 Identities=28% Similarity=0.328 Sum_probs=37.0
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC--HHHHHHHHHCCCEEEEeCC
Q 024022 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS--IERRIILRALGAEVYLADP 123 (274)
Q Consensus 70 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~--~~~~~~~~~~Ga~v~~~~~ 123 (274)
+.+|+..+|.-|.++|..-...|.+++++.....+ ....+.++..+.++..+..
T Consensus 4 ~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (256)
T PRK12745 4 VALVTGGRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQELRALGVEVIFFPA 59 (256)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEecCchhHHHHHHHHHHhcCCceEEEEe
Confidence 45888899999999999988889987776644222 2234445556777766543
No 302
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=50.95 E-value=1.3e+02 Score=27.00 Aligned_cols=56 Identities=32% Similarity=0.298 Sum_probs=36.5
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 024022 62 KGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (274)
Q Consensus 62 ~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 120 (274)
.+...+|.+.+|. .+|..|..++..|+.+|.+.+++... +..+...++.+|++.+.
T Consensus 175 ~~~~~~g~~vlV~-G~G~vG~~av~~Ak~~G~~vi~~~~~--~~~~~~~~~~~Ga~~~i 230 (357)
T PLN02514 175 FGLKQSGLRGGIL-GLGGVGHMGVKIAKAMGHHVTVISSS--DKKREEALEHLGADDYL 230 (357)
T ss_pred cccCCCCCeEEEE-cccHHHHHHHHHHHHCCCeEEEEeCC--HHHHHHHHHhcCCcEEe
Confidence 3444567664444 67889999999999999986554432 22333455679997443
No 303
>PRK10490 sensor protein KdpD; Provisional
Probab=50.91 E-value=2.9e+02 Score=28.72 Aligned_cols=108 Identities=15% Similarity=0.073 Sum_probs=60.9
Q ss_pred CeEEEEeCCChHHH----HHHHHHHHcCCeEEEEeCCC-----CCH-H------HHHHHHHCCCEEEEeCCCCChhHHHH
Q 024022 69 KTVLIELTSGNTGI----GLAFIAASRGYKLIIIMPST-----YSI-E------RRIILRALGAEVYLADPAVGFEGFVK 132 (274)
Q Consensus 69 ~~~vv~~ssGN~g~----alA~~a~~~g~~~~i~~p~~-----~~~-~------~~~~~~~~Ga~v~~~~~~~~~~~~~~ 132 (274)
.+.+|+-|.+-++. ..+..|.+++-+.+++.-++ .+. . .++..+.+||+++.+.++ +..+
T Consensus 251 eriLV~v~~~~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~~~~~~~~~~l~~~~~lA~~lGa~~~~~~~~----dva~ 326 (895)
T PRK10490 251 DAILLCIGHNTGSEKLVRTAARLAARLGSVWHAVYVETPRLHRLPEKKRRAILSALRLAQELGAETATLSDP----AEEK 326 (895)
T ss_pred CeEEEEECCCcchHHHHHHHHHHHHhcCCCEEEEEEecCCcCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCC----CHHH
Confidence 34455556655553 33455667787766544321 111 1 234556799999888764 3344
Q ss_pred HHHHHHHhCC-CeEeeCCCCCCcchHhhhhchHHHHHHhhCCCCCEEEEecC
Q 024022 133 KGEEILNRTP-NGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIG 183 (274)
Q Consensus 133 ~a~~~~~~~~-~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~iv~~vG 183 (274)
...+++++.+ ....+.+..... + ...+++...+++.. +++|..++|..
T Consensus 327 ~i~~~A~~~~vt~IViG~s~~~~-~-~~~~s~~~~l~r~~-~~idi~iv~~~ 375 (895)
T PRK10490 327 AVLRYAREHNLGKIIIGRRASRR-W-WRRESFADRLARLG-PDLDLVIVALD 375 (895)
T ss_pred HHHHHHHHhCCCEEEECCCCCCC-C-ccCCCHHHHHHHhC-CCCCEEEEeCC
Confidence 5556666653 223443332221 1 23457888888887 46888887643
No 304
>PRK12744 short chain dehydrogenase; Provisional
Probab=50.86 E-value=1.3e+02 Score=25.35 Aligned_cols=55 Identities=29% Similarity=0.198 Sum_probs=36.3
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCC-CCH----HHHHHHHHCCCEEEEeCC
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPST-YSI----ERRIILRALGAEVYLADP 123 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~-~~~----~~~~~~~~~Ga~v~~~~~ 123 (274)
.+.+|+..+|.-|.++|..-...|.+++++.... ... ...+.++..|.++..+..
T Consensus 9 k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 68 (257)
T PRK12744 9 KVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQA 68 (257)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEec
Confidence 3557888888899999999888899966665321 111 223445566877765543
No 305
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=50.75 E-value=1.3e+02 Score=25.18 Aligned_cols=55 Identities=15% Similarity=0.176 Sum_probs=36.4
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCH-HHHHHHHHCCCEEEEeCC
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSI-ERRIILRALGAEVYLADP 123 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~-~~~~~~~~~Ga~v~~~~~ 123 (274)
.+.+|+..+|.-|.+++......|.+++++....... .-...++..|.++..+..
T Consensus 12 k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~ 67 (255)
T PRK06113 12 KCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRC 67 (255)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEc
Confidence 4668888888899999998888899877765432111 112344556777665543
No 306
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=50.62 E-value=1.1e+02 Score=26.89 Aligned_cols=59 Identities=25% Similarity=0.259 Sum_probs=39.4
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC-CHHHHHHHHHCCCEEEEe
Q 024022 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTY-SIERRIILRALGAEVYLA 121 (274)
Q Consensus 63 g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~-~~~~~~~~~~~Ga~v~~~ 121 (274)
..+.+|.+.+|...+|..|.+++..|+.+|.++++...... -..+.+.++.+|++-+.-
T Consensus 142 ~~~~~g~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~ 201 (341)
T cd08290 142 VKLQPGDWVIQNGANSAVGQAVIQLAKLLGIKTINVVRDRPDLEELKERLKALGADHVLT 201 (341)
T ss_pred cccCCCCEEEEccchhHHHHHHHHHHHHcCCeEEEEEcCCCcchhHHHHHHhcCCCEEEe
Confidence 44567776444445689999999999999998776665321 124556667788865443
No 307
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=50.54 E-value=1.2e+02 Score=26.74 Aligned_cols=55 Identities=27% Similarity=0.248 Sum_probs=37.0
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEE
Q 024022 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEV 118 (274)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v 118 (274)
....+.+|.+.+|. ..|-.|.++...|+.+|...++.+. .+..+...++.+|++-
T Consensus 161 ~~~~~~~~~~VlI~-g~g~vg~~~iqlak~~g~~~v~~~~--~~~~~~~~~~~~g~~~ 215 (347)
T cd05278 161 ELAGIKPGSTVAVI-GAGPVGLCAVAGARLLGAARIIAVD--SNPERLDLAKEAGATD 215 (347)
T ss_pred hhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEEe--CCHHHHHHHHHhCCcE
Confidence 34456677775564 4577888888889999974444442 3456777778888643
No 308
>PRK09134 short chain dehydrogenase; Provisional
Probab=50.43 E-value=1.5e+02 Score=24.88 Aligned_cols=55 Identities=16% Similarity=0.241 Sum_probs=37.3
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCH--HHHHHHHHCCCEEEEeCC
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSI--ERRIILRALGAEVYLADP 123 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~--~~~~~~~~~Ga~v~~~~~ 123 (274)
.+.+|+..+|.-|..++....+.|..+++....+.+. .-...++..|.++..+..
T Consensus 10 k~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (258)
T PRK09134 10 RAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRDEAEALAAEIRALGRRAVALQA 66 (258)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEc
Confidence 4568888999999999999999999887765543221 112334455777766543
No 309
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=50.28 E-value=1.1e+02 Score=27.10 Aligned_cols=47 Identities=26% Similarity=0.307 Sum_probs=34.5
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEE
Q 024022 68 GKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEV 118 (274)
Q Consensus 68 g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v 118 (274)
|.+.+|...+|..|.+++..|+.+|.++++.... .+.+.++.+|.+-
T Consensus 163 g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~----~~~~~~~~~g~~~ 209 (350)
T cd08248 163 GKRVLILGGSGGVGTFAIQLLKAWGAHVTTTCST----DAIPLVKSLGADD 209 (350)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCc----chHHHHHHhCCce
Confidence 6775566667899999999999999986655432 3566777788743
No 310
>PRK06836 aspartate aminotransferase; Provisional
Probab=50.12 E-value=2e+02 Score=26.20 Aligned_cols=52 Identities=13% Similarity=0.185 Sum_probs=30.7
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCC
Q 024022 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPA 124 (274)
Q Consensus 72 vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~ 124 (274)
|+..++++.+..++..+- ..-.-.|+++...-..-...++.+|++++.++.+
T Consensus 99 i~~t~G~~~al~~~~~~l-~~~gd~Vli~~p~~~~~~~~~~~~g~~v~~v~~~ 150 (394)
T PRK06836 99 IVMTCGAAGALNVALKAI-LNPGDEVIVFAPYFVEYRFYVDNHGGKLVVVPTD 150 (394)
T ss_pred EEEeCChHHHHHHHHHHh-cCCCCEEEEcCCCCccHHHHHHHcCCEEEEEecC
Confidence 666666666665554332 2222345555544334456678899999998753
No 311
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=49.90 E-value=1.7e+02 Score=25.35 Aligned_cols=54 Identities=30% Similarity=0.399 Sum_probs=37.3
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 024022 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (274)
Q Consensus 63 g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 120 (274)
..+.+|.+.++ ..+|..|.+++..|+..|.++++..+ +..+.+.++.+|++.+.
T Consensus 156 ~~~~~g~~vli-~g~g~~g~~~~~~a~~~G~~v~~~~~---~~~~~~~~~~~g~~~~~ 209 (336)
T cd08276 156 GPLKPGDTVLV-QGTGGVSLFALQFAKAAGARVIATSS---SDEKLERAKALGADHVI 209 (336)
T ss_pred cCCCCCCEEEE-ECCcHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCCEEE
Confidence 45667766444 46788999999999999998555443 34566777777775443
No 312
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=49.74 E-value=1.8e+02 Score=25.38 Aligned_cols=81 Identities=14% Similarity=0.106 Sum_probs=43.8
Q ss_pred EEEEeCCCCCCC-chhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-----HHH
Q 024022 34 IAAKLEMMQPCS-SVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-----IER 107 (274)
Q Consensus 34 l~~K~E~~nptG-S~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~-----~~~ 107 (274)
|.+..|.-.-.| +|=.|.... ...+.+.|. ...+++...++... ..-+..|+++..+ |+... ..-
T Consensus 2 i~ir~Da~~~iG~GHv~Rcl~L-A~~l~~~g~----~v~f~~~~~~~~~~---~~i~~~g~~v~~~-~~~~~~~~d~~~~ 72 (279)
T TIGR03590 2 ILFRADASSEIGLGHVMRCLTL-ARALHAQGA----EVAFACKPLPGDLI---DLLLSAGFPVYEL-PDESSRYDDALEL 72 (279)
T ss_pred EEEEecCCccccccHHHHHHHH-HHHHHHCCC----EEEEEeCCCCHHHH---HHHHHcCCeEEEe-cCCCchhhhHHHH
Confidence 455556554444 566665432 233334553 33345444444332 2346788886654 54321 134
Q ss_pred HHHHHHCCCEEEEeCC
Q 024022 108 RIILRALGAEVYLADP 123 (274)
Q Consensus 108 ~~~~~~~Ga~v~~~~~ 123 (274)
.+.++..+.+++.++.
T Consensus 73 ~~~l~~~~~d~vV~D~ 88 (279)
T TIGR03590 73 INLLEEEKFDILIVDH 88 (279)
T ss_pred HHHHHhcCCCEEEEcC
Confidence 5667778889999985
No 313
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=49.71 E-value=1.2e+02 Score=25.13 Aligned_cols=55 Identities=16% Similarity=0.126 Sum_probs=37.4
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC--HHHHHHHHHCCCEEEEeCC
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS--IERRIILRALGAEVYLADP 123 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~--~~~~~~~~~~Ga~v~~~~~ 123 (274)
.+.+|+..+|--|.+++......|.++++....... ......++..|.++..+..
T Consensus 7 ~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (252)
T PRK06077 7 KVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKENGGEGIGVLA 63 (252)
T ss_pred cEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHcCCeeEEEEe
Confidence 455778888889999999888889987765543211 2234456667877765543
No 314
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=49.61 E-value=1e+02 Score=27.36 Aligned_cols=49 Identities=33% Similarity=0.374 Sum_probs=36.3
Q ss_pred CCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEE
Q 024022 66 TPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEV 118 (274)
Q Consensus 66 ~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v 118 (274)
.++.+.+|...+|..|.+++..|+.+|.+.+... . ..|.+.++.+|++-
T Consensus 153 ~~~~~vlI~ga~g~vg~~~~~~a~~~G~~v~~~~-~---~~~~~~~~~~g~~~ 201 (339)
T cd08249 153 SKGKPVLIWGGSSSVGTLAIQLAKLAGYKVITTA-S---PKNFDLVKSLGADA 201 (339)
T ss_pred CCCCEEEEEcChhHHHHHHHHHHHHcCCeEEEEE-C---cccHHHHHhcCCCE
Confidence 5666756666678899999999999999866554 2 25677778889843
No 315
>PRK07791 short chain dehydrogenase; Provisional
Probab=49.43 E-value=1.6e+02 Score=25.54 Aligned_cols=72 Identities=14% Similarity=0.172 Sum_probs=43.2
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCC---------C-CHHHHHHHHHCCCEEEEeCCC-CChhHHHHHHHHH
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPST---------Y-SIERRIILRALGAEVYLADPA-VGFEGFVKKGEEI 137 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~---------~-~~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~ 137 (274)
.+.+|+..++.-|.++|....+.|.+++++.... . .....+.++..|.++..+..+ .+.++..+...+.
T Consensus 7 k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 86 (286)
T PRK07791 7 RVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANLVDAA 86 (286)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHHHHHH
Confidence 4668888888899999998888999877664321 0 112234455668777665433 2233444444444
Q ss_pred HHh
Q 024022 138 LNR 140 (274)
Q Consensus 138 ~~~ 140 (274)
.++
T Consensus 87 ~~~ 89 (286)
T PRK07791 87 VET 89 (286)
T ss_pred HHh
Confidence 444
No 316
>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase. This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).
Probab=49.32 E-value=2.6e+02 Score=27.13 Aligned_cols=82 Identities=15% Similarity=0.063 Sum_probs=40.9
Q ss_pred CCCCchhhHHHHHHHHHHHHc-CCCCCCC-eEEEEeCCChHHHHHHHHHH----Hc--CCeEEEEeCCCCCHHHHHHHHH
Q 024022 42 QPCSSVKDRIAYSMIKDAEDK-GLITPGK-TVLIELTSGNTGIGLAFIAA----SR--GYKLIIIMPSTYSIERRIILRA 113 (274)
Q Consensus 42 nptGS~K~R~a~~~~~~a~~~-g~~~~g~-~~vv~~ssGN~g~alA~~a~----~~--g~~~~i~~p~~~~~~~~~~~~~ 113 (274)
.|.|....|-+...-....+. +...+.. ..|+..+++..+..++..+- .+ |=++.+..|.-.+-...-.+..
T Consensus 126 ~p~g~~~~~e~iv~~y~~~~~~~~~~~~~~~~V~it~Gat~al~~~~~~l~~~~ll~pGD~Vlv~~P~y~~y~~~~~l~~ 205 (521)
T TIGR03801 126 VPDRMLPHSEKIVHQYLIQEMCGNKPPPGEFDLFAVEGGTAAMCYIFDSLKANELLKKGDKIALMTPIFTPYLEIPELPR 205 (521)
T ss_pred CCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHHHHhHhhcCCCCCEEEEeCCCcHHHHHHHHHhc
Confidence 467777766543321111222 2222221 14787888888877766541 22 3333333343323333333445
Q ss_pred CCCEEEEeCC
Q 024022 114 LGAEVYLADP 123 (274)
Q Consensus 114 ~Ga~v~~~~~ 123 (274)
+|++++.++.
T Consensus 206 ~g~~vv~i~~ 215 (521)
T TIGR03801 206 YDFEVVRIKA 215 (521)
T ss_pred CCcEEEEeec
Confidence 6888887764
No 317
>PRK07392 threonine-phosphate decarboxylase; Validated
Probab=49.26 E-value=1.3e+02 Score=27.09 Aligned_cols=50 Identities=16% Similarity=0.038 Sum_probs=32.4
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCC
Q 024022 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (274)
Q Consensus 72 vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 123 (274)
|+..+++..+..++..+-.-| + .|+++.-+-..-...++.+|++++.++-
T Consensus 77 I~it~G~~~~i~~~~~~l~~g-~-~vlv~~P~y~~~~~~~~~~g~~~~~v~~ 126 (360)
T PRK07392 77 ILPGNGAAELLTWAGRELAQL-R-AVYLITPAFGDYRRALRAFGATVKELPL 126 (360)
T ss_pred EEECCCHHHHHHHHHHHhCCC-C-eEEEECCCcHHHHHHHHHcCCeEEEEec
Confidence 666666677776665432223 3 4555654555567788889999998864
No 318
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=49.22 E-value=2.7e+02 Score=28.13 Aligned_cols=31 Identities=26% Similarity=0.380 Sum_probs=28.0
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 024022 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPS 101 (274)
Q Consensus 71 ~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~ 101 (274)
.|+.-.+|-.|.+.|..+++.|++++||=..
T Consensus 433 ~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~ 463 (752)
T PRK12778 433 KVAVIGSGPAGLSFAGDLAKRGYDVTVFEAL 463 (752)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecC
Confidence 4888899999999999999999999988764
No 319
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=49.17 E-value=1.3e+02 Score=27.53 Aligned_cols=95 Identities=15% Similarity=0.256 Sum_probs=39.8
Q ss_pred eEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCC--hhHHHHHHHHHHHhCCCeEe-eCCC-CCCcchHhhhhchHHHHHH
Q 024022 94 KLIIIMPSTYSIERRIILRALGAEVYLADPAVG--FEGFVKKGEEILNRTPNGYI-LGQF-ENPANPEIHYETTGPEIWN 169 (274)
Q Consensus 94 ~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~--~~~~~~~a~~~~~~~~~~~~-~~~~-~~~~~~~~g~~t~~~Ei~~ 169 (274)
|..++.-++.-..-.+.++.+|-++..+.+... ..+..+...+..++.+-.+. .+.. .||..- ...-+.++++
T Consensus 4 p~~i~fG~g~l~~l~~~~~~~g~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~---~v~~~~~~~~ 80 (380)
T cd08185 4 PTKIVFGAGKLNELGEEALKPGKKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTTT---TVMEGAALAR 80 (380)
T ss_pred CCeEEECcCHHHHHHHHHHhcCCeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHH---HHHHHHHHHH
Confidence 344444443333333445556666665543221 12334444444444321121 1121 233321 1112234444
Q ss_pred hhCCCCCEEEEecCCcccHHHHHHHH
Q 024022 170 DSGGKVDAFIAGIGTGGTVTGAGRFL 195 (274)
Q Consensus 170 q~~~~~d~iv~~vG~Gg~~~Gi~~~~ 195 (274)
+. ++| +|+++|+|..+ =+++++
T Consensus 81 ~~--~~D-~IiavGGGS~i-D~aK~i 102 (380)
T cd08185 81 EE--GCD-FVVGLGGGSSM-DTAKAI 102 (380)
T ss_pred Hc--CCC-EEEEeCCccHH-HHHHHH
Confidence 43 467 55788876654 444443
No 320
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=49.03 E-value=1.5e+02 Score=26.52 Aligned_cols=82 Identities=15% Similarity=0.084 Sum_probs=42.6
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHH-HhCCCeEeeCCC
Q 024022 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEIL-NRTPNGYILGQF 150 (274)
Q Consensus 72 vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~ 150 (274)
|+..+++..+..++..+- .+-.-.|+++.-+-..-....+.+|++++.++-+.++.-..+...+.. .......++...
T Consensus 84 I~~t~G~~~~i~~~~~~~-~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~d~~~l~~~~~~~~~~~v~l~~p 162 (356)
T PRK04870 84 VLLGNGSDELIQLLALAC-AKPGATVLAPEPGFVMYRMSAKLAGLEFVGVPLTADFTLDLPAMLAAIAEHRPALVFLAYP 162 (356)
T ss_pred EEEcCCHHHHHHHHHHHh-cCCCCEEEECCCCHHHHHHHHHHcCCEEEEecCCCCCCCCHHHHHHHhhcCCCCEEEEcCC
Confidence 665555555655544322 222234556654445556678889999999875422221122222222 223366776544
Q ss_pred CCCc
Q 024022 151 ENPA 154 (274)
Q Consensus 151 ~~~~ 154 (274)
.||.
T Consensus 163 ~NPt 166 (356)
T PRK04870 163 NNPT 166 (356)
T ss_pred CCCC
Confidence 4543
No 321
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=48.97 E-value=1.8e+02 Score=25.37 Aligned_cols=54 Identities=28% Similarity=0.356 Sum_probs=38.3
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCE
Q 024022 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAE 117 (274)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~ 117 (274)
+...+.+|.+.+|. ..|..|.+++..|+.+|++.++++.. +..+...++.+|+.
T Consensus 153 ~~~~~~~g~~vlI~-g~g~vg~~~~~la~~~G~~~v~~~~~--~~~~~~~~~~~g~~ 206 (334)
T cd08234 153 DLLGIKPGDSVLVF-GAGPIGLLLAQLLKLNGASRVTVAEP--NEEKLELAKKLGAT 206 (334)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEECC--CHHHHHHHHHhCCe
Confidence 44556777775555 56888999999999999885444433 35567777788886
No 322
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=48.90 E-value=1.5e+02 Score=25.98 Aligned_cols=68 Identities=29% Similarity=0.366 Sum_probs=44.7
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHH----H-HHCCCEEEEeCCCC-ChhHHHHHHHHHHH
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRII----L-RALGAEVYLADPAV-GFEGFVKKGEEILN 139 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~----~-~~~Ga~v~~~~~~~-~~~~~~~~a~~~~~ 139 (274)
.+.+||..|+.-|.++|..-++.|.+++++.... .|+.. + +.+|.+|...+.+. +.++..+...++..
T Consensus 7 ~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~---~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~ 80 (265)
T COG0300 7 KTALITGASSGIGAELAKQLARRGYNLILVARRE---DKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKE 80 (265)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcH---HHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHh
Confidence 4568888888899999999999999999998864 33332 2 33677776665432 22334444444443
No 323
>PRK06138 short chain dehydrogenase; Provisional
Probab=48.56 E-value=1.6e+02 Score=24.49 Aligned_cols=54 Identities=9% Similarity=0.160 Sum_probs=34.9
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHCCCEEEEeCC
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLADP 123 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~~ 123 (274)
.+.+|+..+|-.|.++|......|.+++++...... ......++ .+.++..+..
T Consensus 6 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~ 60 (252)
T PRK06138 6 RVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA-AGGRAFARQG 60 (252)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh-cCCeEEEEEc
Confidence 456888899999999999877889887666543211 11222333 5776665543
No 324
>PRK07324 transaminase; Validated
Probab=48.49 E-value=1.5e+02 Score=26.80 Aligned_cols=51 Identities=18% Similarity=-0.008 Sum_probs=30.1
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCC
Q 024022 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (274)
Q Consensus 72 vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 123 (274)
|+..+++..+..++..+- ++-.-.|+++.-.-..-....+.+|++++.++-
T Consensus 83 vi~t~G~~~al~~~~~~l-~~~gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~~ 133 (373)
T PRK07324 83 ILQTNGATGANFLVLYAL-VEPGDHVISVYPTYQQLYDIPESLGAEVDYWQL 133 (373)
T ss_pred EEEcCChHHHHHHHHHHh-CCCCCEEEEcCCCchhHHHHHHHcCCEEEEEec
Confidence 666666666666555443 222233455543333445667889999998874
No 325
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=48.45 E-value=1.6e+02 Score=24.49 Aligned_cols=52 Identities=33% Similarity=0.509 Sum_probs=33.8
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCE
Q 024022 62 KGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAE 117 (274)
Q Consensus 62 ~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~ 117 (274)
...+.++.+.+|...++ .|.+++..++..|.+.+++.+. ..+.+.++.+|++
T Consensus 129 ~~~~~~~~~vli~g~~~-~G~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~ 180 (271)
T cd05188 129 AGVLKPGDTVLVLGAGG-VGLLAAQLAKAAGARVIVTDRS---DEKLELAKELGAD 180 (271)
T ss_pred ccCCCCCCEEEEECCCH-HHHHHHHHHHHcCCeEEEEcCC---HHHHHHHHHhCCc
Confidence 33345666655555555 9999999999999776655443 3455566666654
No 326
>PRK06701 short chain dehydrogenase; Provisional
Probab=48.25 E-value=1.8e+02 Score=25.19 Aligned_cols=55 Identities=20% Similarity=0.217 Sum_probs=38.3
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC--HHHHHHHHHCCCEEEEeCC
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS--IERRIILRALGAEVYLADP 123 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~--~~~~~~~~~~Ga~v~~~~~ 123 (274)
.+.+|+..+|.-|.++|....+.|.+++++...... ......++..|.++..+..
T Consensus 47 k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (290)
T PRK06701 47 KVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPG 103 (290)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEc
Confidence 455888888889999999988889998776554322 2233455667877766554
No 327
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=48.05 E-value=1.3e+02 Score=26.41 Aligned_cols=52 Identities=25% Similarity=0.233 Sum_probs=35.8
Q ss_pred CCCCCCeEEEEeCCChHHHHHHHHHHHcC-CeEEEEeCCCCCHHHHHHHHHCCCEEE
Q 024022 64 LITPGKTVLIELTSGNTGIGLAFIAASRG-YKLIIIMPSTYSIERRIILRALGAEVY 119 (274)
Q Consensus 64 ~~~~g~~~vv~~ssGN~g~alA~~a~~~g-~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 119 (274)
.+.++.+.+|.. .|..|.+++..|+.+| .+++++.. ++.+.+.++.+|++-+
T Consensus 164 ~~~~~~~vlI~g-~~~vg~~~~~~a~~~g~~~v~~~~~---~~~~~~~~~~~g~~~~ 216 (340)
T cd05284 164 YLDPGSTVVVIG-VGGLGHIAVQILRALTPATVIAVDR---SEEALKLAERLGADHV 216 (340)
T ss_pred cCCCCCEEEEEc-CcHHHHHHHHHHHHhCCCcEEEEeC---CHHHHHHHHHhCCcEE
Confidence 355666655555 6669999999999999 67655433 3466777788887433
No 328
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=47.91 E-value=1.8e+02 Score=27.03 Aligned_cols=30 Identities=20% Similarity=0.348 Sum_probs=17.6
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 024022 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPS 101 (274)
Q Consensus 72 vv~~ssGN~g~alA~~a~~~g~~~~i~~p~ 101 (274)
|+..+.|.+|.-.+-.++++|.+++++-.+
T Consensus 83 VLv~~nG~FG~R~~~ia~~~g~~v~~~~~~ 112 (383)
T COG0075 83 VLVVVNGKFGERFAEIAERYGAEVVVLEVE 112 (383)
T ss_pred EEEEeCChHHHHHHHHHHHhCCceEEEeCC
Confidence 555556666666666666666666555544
No 329
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=47.71 E-value=1.7e+02 Score=25.85 Aligned_cols=52 Identities=29% Similarity=0.432 Sum_probs=36.5
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcC-CeEEEEeCCCCCHHHHHHHHHCCCE
Q 024022 62 KGLITPGKTVLIELTSGNTGIGLAFIAASRG-YKLIIIMPSTYSIERRIILRALGAE 117 (274)
Q Consensus 62 ~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g-~~~~i~~p~~~~~~~~~~~~~~Ga~ 117 (274)
...+.+|.+.+|. ..|..|.+++..|+.+| .++++ +.. +..|...++.+|++
T Consensus 161 ~~~~~~g~~vlI~-g~g~~g~~~~~~a~~~G~~~v~~-~~~--~~~~~~~~~~~g~~ 213 (345)
T cd08286 161 NGKVKPGDTVAIV-GAGPVGLAALLTAQLYSPSKIIM-VDL--DDNRLEVAKKLGAT 213 (345)
T ss_pred hcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEE-EcC--CHHHHHHHHHhCCC
Confidence 3446677775664 56999999999999999 55443 332 55667777888874
No 330
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=47.65 E-value=45 Score=26.49 Aligned_cols=46 Identities=26% Similarity=0.266 Sum_probs=36.1
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeC
Q 024022 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLAD 122 (274)
Q Consensus 72 vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~ 122 (274)
+|...+|+.|..++....+.|.++++++....+.. . ..+.+++..+
T Consensus 2 ~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~---~--~~~~~~~~~d 47 (183)
T PF13460_consen 2 LVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAE---D--SPGVEIIQGD 47 (183)
T ss_dssp EEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHH---H--CTTEEEEESC
T ss_pred EEECCCChHHHHHHHHHHHCCCEEEEEecCchhcc---c--ccccccceee
Confidence 57778999999999999999999999998754333 2 5566666655
No 331
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=47.51 E-value=2.2e+02 Score=25.83 Aligned_cols=109 Identities=14% Similarity=0.084 Sum_probs=50.9
Q ss_pred CCCchhhHHHHHHHHHHHHcCC-CCCCCeEEEEeCCChHHHHHHHHHHH-cCCeEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 024022 43 PCSSVKDRIAYSMIKDAEDKGL-ITPGKTVLIELTSGNTGIGLAFIAAS-RGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (274)
Q Consensus 43 ptGS~K~R~a~~~~~~a~~~g~-~~~g~~~vv~~ssGN~g~alA~~a~~-~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 120 (274)
+.|....|-+..-... ...|. +.+.. .|+..+.+..+..++..+-. -|= .|+++.-+-..-...++.+|++++.
T Consensus 67 ~~G~~~lr~aia~~~~-~~~g~~~~~~~-~I~it~Gs~~al~~~~~~l~~~gd--~Vlv~~P~y~~~~~~~~~~g~~~~~ 142 (388)
T PRK07366 67 FHGTLDFREAAAQWYE-QRFGLAVDPET-EVLPLIGSQEGTAHLPLAVLNPGD--FALLLDPGYPSHAGGVYLAGGQIYP 142 (388)
T ss_pred CCCCHHHHHHHHHHHH-HhhCCcCCCcC-eEEECCCcHHHHHHHHHHhCCCCC--EEEEcCCCCcchHHHHHhcCCEEEE
Confidence 3566566644332211 12232 33321 26656666666665544311 232 3344442333335667789999998
Q ss_pred eCCC--CChhHHHHHHHHHHHhCCCeEeeCCCCCCcc
Q 024022 121 ADPA--VGFEGFVKKGEEILNRTPNGYILGQFENPAN 155 (274)
Q Consensus 121 ~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 155 (274)
++-+ ..+....+...+........+|++...||..
T Consensus 143 v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~p~NPTG 179 (388)
T PRK07366 143 MPLRAENDFLPVFADIPTEVLAQARLMVLSYPHNPTT 179 (388)
T ss_pred EECCCccCCCCCHHHHHHhhcccceEEEEeCCCCCCC
Confidence 8642 1222112222222222336777765555544
No 332
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=47.43 E-value=80 Score=27.25 Aligned_cols=33 Identities=30% Similarity=0.433 Sum_probs=23.2
Q ss_pred eEEEEeCCChHH---HHHHHHHHHcCCeEEEEeCCC
Q 024022 70 TVLIELTSGNTG---IGLAFIAASRGYKLIIIMPST 102 (274)
Q Consensus 70 ~~vv~~ssGN~g---~alA~~a~~~g~~~~i~~p~~ 102 (274)
+.+|.+..||.| ..+|......|+++.+|+++.
T Consensus 62 ~V~VlcG~GNNGGDGlv~AR~L~~~G~~V~v~~~~~ 97 (246)
T PLN03050 62 RVLLVCGPGNNGGDGLVAARHLAHFGYEVTVCYPKQ 97 (246)
T ss_pred eEEEEECCCCCchhHHHHHHHHHHCCCeEEEEEcCC
Confidence 446777777765 455555666799999999653
No 333
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=47.17 E-value=1.8e+02 Score=24.96 Aligned_cols=50 Identities=32% Similarity=0.336 Sum_probs=37.3
Q ss_pred CCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEE
Q 024022 67 PGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (274)
Q Consensus 67 ~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 119 (274)
+|.+.++...+|..|.+++..|+.+|.+.+...+ +..+...++.+|+...
T Consensus 132 ~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~~ 181 (305)
T cd08270 132 LGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVG---SPARAEGLRELGAAEV 181 (305)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCcEE
Confidence 4667566667799999999999999998544433 3567788888998633
No 334
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=47.16 E-value=1.8e+02 Score=24.79 Aligned_cols=120 Identities=20% Similarity=0.096 Sum_probs=64.1
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHC---CCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchH
Q 024022 81 GIGLAFIAASRGYKLIIIMPSTYSIERRIILRAL---GAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPE 157 (274)
Q Consensus 81 g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~---Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 157 (274)
|.+.|.+.+++|+++.++-++..+...+..+..+ |.+|....+... +....+.+.++.-....+..|.+-...
T Consensus 86 G~~Ta~~l~~~G~~~~~~p~~~~~~~l~~~l~~~~~~~~~vl~~~~~~~---r~~l~~~L~~~G~~v~~~~~Y~~~~~~- 161 (248)
T COG1587 86 GEKTAEALRKLGIKVDFIPEDGDSEGLLEELPELLKGGKRVLILRGNGG---REVLEEKLEERGAEVREVEVYRTEPPP- 161 (248)
T ss_pred cHHHHHHHHHhCCCCCcCCCccchHHHHHHhhhhccCCCeEEEEcCCCc---hHHHHHHHHhCCCEEEEEeeeeecCCC-
Confidence 5677888899999988766666677777777776 677876654422 112223333322123344445432221
Q ss_pred hhhhchHHHHHHhhCCCCCEEEEecCCcccHHHHHHHHHhhCC----CcEEEEEec
Q 024022 158 IHYETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNP----NIKVYGIEP 209 (274)
Q Consensus 158 ~g~~t~~~Ei~~q~~~~~d~iv~~vG~Gg~~~Gi~~~~k~~~~----~~~vigve~ 209 (274)
+. ....+.......+|.|+... +.++-.+...+...++ +.+++.+-|
T Consensus 162 --~~-~~~~~~~~~~~~~d~v~ftS--~~~v~~~~~~~~~~~~~~~~~~~v~~IG~ 212 (248)
T COG1587 162 --LD-EATLIELLKLGEVDAVVFTS--SSAVRALLALAPESGIEFLERKRVASIGP 212 (248)
T ss_pred --cc-HHHHHHHHHhCCCCEEEEeC--HHHHHHHHHHccccchhHhhCceEEEecH
Confidence 22 11111111124689998884 4555566655554443 255555543
No 335
>PRK08068 transaminase; Reviewed
Probab=47.01 E-value=2.2e+02 Score=25.80 Aligned_cols=77 Identities=12% Similarity=-0.045 Sum_probs=40.4
Q ss_pred CCchhhHHHHHHHHHHHHcCC-CCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeC
Q 024022 44 CSSVKDRIAYSMIKDAEDKGL-ITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLAD 122 (274)
Q Consensus 44 tGS~K~R~a~~~~~~a~~~g~-~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~ 122 (274)
.|.-..|.+....... +.|. ..++. .|+..+.|..+..++..+ ..+-.-.|++|.-+-..-...++.+|++++.++
T Consensus 70 ~g~~~lr~aia~~~~~-~~g~~~~~~~-~i~it~G~~~~l~~~~~~-~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~ 146 (389)
T PRK08068 70 RGYPFLKEAAADFYKR-EYGVTLDPET-EVAILFGGKAGLVELPQC-LMNPGDTILVPDPGYPDYLSGVALARAQFETMP 146 (389)
T ss_pred CCCHHHHHHHHHHHHH-HhCCCCCCCc-cEEEcCCcHHHHHHHHHH-hCCCCCEEEEcCCCCcchHHHHHhcCCEEEEee
Confidence 4555555443332221 1232 33331 266666666666554332 233334566665444444556778999999887
Q ss_pred C
Q 024022 123 P 123 (274)
Q Consensus 123 ~ 123 (274)
-
T Consensus 147 ~ 147 (389)
T PRK08068 147 L 147 (389)
T ss_pred c
Confidence 4
No 336
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=46.89 E-value=1.4e+02 Score=31.33 Aligned_cols=32 Identities=16% Similarity=0.200 Sum_probs=28.5
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 024022 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPS 101 (274)
Q Consensus 70 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~ 101 (274)
+.|+.-.+|-.|.++|++..+.|.++++|=..
T Consensus 384 KKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~ 415 (1028)
T PRK06567 384 YNILVTGLGPAGFSLSYYLLRSGHNVTAIDGL 415 (1028)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCeEEEEccc
Confidence 34888999999999999999999999999754
No 337
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=46.75 E-value=1.5e+02 Score=24.67 Aligned_cols=54 Identities=17% Similarity=0.215 Sum_probs=36.0
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHH-HHHHHHCCCEEEEeCC
Q 024022 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIER-RIILRALGAEVYLADP 123 (274)
Q Consensus 70 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~-~~~~~~~Ga~v~~~~~ 123 (274)
+.+|+..+|-.|.+++....+.|.+++++........+ ...++..+.++..+..
T Consensus 3 ~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 57 (255)
T TIGR01963 3 TALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAGGSVIYLVA 57 (255)
T ss_pred EEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEC
Confidence 45788888999999999988889987777654222112 2234455777766553
No 338
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=46.70 E-value=1.2e+02 Score=28.68 Aligned_cols=54 Identities=20% Similarity=0.203 Sum_probs=38.6
Q ss_pred CCeEEEEeCC---ChHHHHHHHHHHHc-CCeEEEEeCCCC--CHHHHHHHHHCCCEEEEeC
Q 024022 68 GKTVLIELTS---GNTGIGLAFIAASR-GYKLIIIMPSTY--SIERRIILRALGAEVYLAD 122 (274)
Q Consensus 68 g~~~vv~~ss---GN~g~alA~~a~~~-g~~~~i~~p~~~--~~~~~~~~~~~Ga~v~~~~ 122 (274)
|.+ |+-... +|.+.+++..++.+ |++++++.|+.. +...++.++..|++|...+
T Consensus 241 G~k-Ia~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~~~ 300 (429)
T PRK11891 241 GAH-IALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQTD 300 (429)
T ss_pred CCE-EEEECcCCCChHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEEEEc
Confidence 344 444434 69999999996665 999999999854 4444566667788887765
No 339
>PRK08912 hypothetical protein; Provisional
Probab=46.68 E-value=2.2e+02 Score=25.73 Aligned_cols=78 Identities=14% Similarity=0.068 Sum_probs=42.4
Q ss_pred CCCchhhHHHHHHHHHHHHcCC-CCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEe
Q 024022 43 PCSSVKDRIAYSMIKDAEDKGL-ITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLA 121 (274)
Q Consensus 43 ptGS~K~R~a~~~~~~a~~~g~-~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~ 121 (274)
+.|....|.+..-... ...|. ..|. ..|+..+++..+..++..+-. +-.-.|+++...-..-...++.+|++++.+
T Consensus 62 ~~G~~~lr~~ia~~~~-~~~g~~~~~~-~~i~~t~G~~~al~~~~~~~~-~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~ 138 (387)
T PRK08912 62 MMGLPELRQAVAAHYA-RFQGLDLDPE-TEVMVTSGATEALAAALLALV-EPGDEVVLFQPLYDAYLPLIRRAGGVPRLV 138 (387)
T ss_pred CCCcHHHHHHHHHHHH-HHhCCCCCCc-ccEEEeCCcHHHHHHHHHHhc-CCCCEEEEeCCCchhhHHHHHHcCCEEEEE
Confidence 4565566654442221 11232 2332 137777777777765555432 222345555544444456778999999887
Q ss_pred CC
Q 024022 122 DP 123 (274)
Q Consensus 122 ~~ 123 (274)
+-
T Consensus 139 ~~ 140 (387)
T PRK08912 139 RL 140 (387)
T ss_pred ec
Confidence 64
No 340
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=46.58 E-value=97 Score=28.70 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=13.8
Q ss_pred HHHHHHhhCCCCCEEEEecCCcccH
Q 024022 164 GPEIWNDSGGKVDAFIAGIGTGGTV 188 (274)
Q Consensus 164 ~~Ei~~q~~~~~d~iv~~vG~Gg~~ 188 (274)
+.+++++. ++| +|+++|+|+.+
T Consensus 98 ~~~~~r~~--~~D-~IiavGGGS~i 119 (395)
T PRK15454 98 AVAQLRES--GCD-GVIAFGGGSVL 119 (395)
T ss_pred HHHHHHhc--CcC-EEEEeCChHHH
Confidence 44555553 467 56888877765
No 341
>PRK08264 short chain dehydrogenase; Validated
Probab=46.46 E-value=1.1e+02 Score=25.27 Aligned_cols=33 Identities=21% Similarity=0.203 Sum_probs=26.5
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCC-eEEEEeCC
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGY-KLIIIMPS 101 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~-~~~i~~p~ 101 (274)
.+.+|+..+|.-|.++|....+.|. +++++...
T Consensus 7 ~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~ 40 (238)
T PRK08264 7 KVVLVTGANRGIGRAFVEQLLARGAAKVYAAARD 40 (238)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCcccEEEEecC
Confidence 4558888899999999999999998 76665543
No 342
>PRK09291 short chain dehydrogenase; Provisional
Probab=46.43 E-value=92 Score=26.10 Aligned_cols=53 Identities=19% Similarity=0.186 Sum_probs=35.1
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHH-HHHHHHCCCEEEEeC
Q 024022 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIER-RIILRALGAEVYLAD 122 (274)
Q Consensus 70 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~-~~~~~~~Ga~v~~~~ 122 (274)
+.+|+..+|..|.+++......|.+++++........+ .......|.++..+.
T Consensus 4 ~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 57 (257)
T PRK09291 4 TILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGLALRVEK 57 (257)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEE
Confidence 45888899999999999999999998887764211111 222344555554443
No 343
>PRK06198 short chain dehydrogenase; Provisional
Probab=46.36 E-value=1.8e+02 Score=24.41 Aligned_cols=55 Identities=24% Similarity=0.249 Sum_probs=36.5
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCH--HHHHHHHHCCCEEEEeCC
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSI--ERRIILRALGAEVYLADP 123 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~--~~~~~~~~~Ga~v~~~~~ 123 (274)
.+.+|+..+|..|..+|......|.+.++++..+... .....++..|.++..+..
T Consensus 7 k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~ 63 (260)
T PRK06198 7 KVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQA 63 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEc
Confidence 4557888888999999999888999845455443221 123345667888765543
No 344
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=46.27 E-value=2.1e+02 Score=25.18 Aligned_cols=54 Identities=31% Similarity=0.426 Sum_probs=36.1
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCE
Q 024022 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAE 117 (274)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~ 117 (274)
+...+.+|...+|. .+|-.|.+++..|+.+|.+.++++.. +..+...++.+|.+
T Consensus 159 ~~~~~~~g~~VlV~-g~g~vg~~~~~la~~~g~~~v~~~~~--s~~~~~~~~~~g~~ 212 (343)
T cd08235 159 RKAGIKPGDTVLVI-GAGPIGLLHAMLAKASGARKVIVSDL--NEFRLEFAKKLGAD 212 (343)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEECC--CHHHHHHHHHhCCc
Confidence 34457777775666 46778888888999999994444432 44555666667763
No 345
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=46.22 E-value=1.5e+02 Score=26.83 Aligned_cols=52 Identities=12% Similarity=-0.108 Sum_probs=29.1
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCC
Q 024022 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPA 124 (274)
Q Consensus 72 vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~ 124 (274)
|+..+++..+..++..+- ..-.-.|+++.-+-..-...++.+|.+++.++.+
T Consensus 91 i~~t~G~~~~l~~~~~~~-~~~gd~vli~~P~y~~~~~~~~~~g~~~~~v~~~ 142 (371)
T PRK05166 91 IILGNGSEDLIAVICRAV-LRPGDRVVTLYPSFPLHEDYPTMMGARVERVTVT 142 (371)
T ss_pred EEEcCCHHHHHHHHHHHh-cCCCCEEEEcCCChHHHHHHHHHcCCeEEEeecC
Confidence 565555555555444332 2222234455433344456778899999988753
No 346
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=46.22 E-value=1.3e+02 Score=24.94 Aligned_cols=55 Identities=27% Similarity=0.280 Sum_probs=37.1
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC--HHHHHHHHHCCCEEEEeCCC
Q 024022 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS--IERRIILRALGAEVYLADPA 124 (274)
Q Consensus 70 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~--~~~~~~~~~~Ga~v~~~~~~ 124 (274)
+.+|+..+|..|.++|..-.+.|..+++....+.. ......++..+.+++.+..+
T Consensus 4 ~ilItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 60 (248)
T PRK06947 4 VVLITGASRGIGRATAVLAAARGWSVGINYARDAAAAEETADAVRAAGGRACVVAGD 60 (248)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEec
Confidence 44788888889999999988889887665543221 12234556677777766543
No 347
>PRK06500 short chain dehydrogenase; Provisional
Probab=46.17 E-value=1.7e+02 Score=24.22 Aligned_cols=51 Identities=20% Similarity=0.135 Sum_probs=34.9
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHH-HHHHCCCEEEEeC
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRI-ILRALGAEVYLAD 122 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~-~~~~~Ga~v~~~~ 122 (274)
.+.+|+..+|..|.+++......|.+++++... ..+.. ..+.+|.++..+.
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~---~~~~~~~~~~~~~~~~~~~ 58 (249)
T PRK06500 7 KTALITGGTSGIGLETARQFLAEGARVAITGRD---PASLEAARAELGESALVIR 58 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCC---HHHHHHHHHHhCCceEEEE
Confidence 456888889999999999988899987665433 22222 3344577766554
No 348
>PLN02527 aspartate carbamoyltransferase
Probab=46.12 E-value=73 Score=28.47 Aligned_cols=45 Identities=22% Similarity=0.260 Sum_probs=31.7
Q ss_pred ChHHHHHHHHHHHc-CCeEEEEeCCC--CCHHHHHHHHHCCCEEEEeC
Q 024022 78 GNTGIGLAFIAASR-GYKLIIIMPST--YSIERRIILRALGAEVYLAD 122 (274)
Q Consensus 78 GN~g~alA~~a~~~-g~~~~i~~p~~--~~~~~~~~~~~~Ga~v~~~~ 122 (274)
+|.+.+++.+++++ |+.++++.|+. .+....+.++..|.++....
T Consensus 163 ~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~ 210 (306)
T PLN02527 163 GRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEESS 210 (306)
T ss_pred ChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEEc
Confidence 46788888887776 88888888875 34444555666677776654
No 349
>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]
Probab=45.79 E-value=2.9e+02 Score=26.72 Aligned_cols=91 Identities=19% Similarity=0.135 Sum_probs=66.6
Q ss_pred eEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHH
Q 024022 33 RIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILR 112 (274)
Q Consensus 33 ~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~ 112 (274)
.+-++.|....|+|-=.-.+..+.+-.+..| +.+|++.-+.++-..+=.-..++|++.|+-.+-+=|.-.+.+....|+
T Consensus 68 a~Vf~~eg~R~Tf~~~~~ev~slAaGll~lG-L~kGDrVgvwgpN~~~w~l~~lA~A~AG~v~v~~NP~Yq~~elr~~L~ 146 (596)
T KOG1177|consen 68 AAVFDHEGIRLTFSEFVSEVESLAAGLLSLG-LKKGDRVGVWGPNSYEWVLCQLACARAGLVLVNLNPAYQSEELRYVLK 146 (596)
T ss_pred EEEEeeccchhhHHHHHHHHHHHHhhHHhhc-CCCCCEEEEecCChHHHHHHHHHHHHhceEEeccCcccccHHHHHHHh
Confidence 5677888877666433345555555556666 677777555556555567778889999998887778777788888899
Q ss_pred HCCCEEEEeCCC
Q 024022 113 ALGAEVYLADPA 124 (274)
Q Consensus 113 ~~Ga~v~~~~~~ 124 (274)
..|.++.+.+..
T Consensus 147 k~~~k~l~~p~~ 158 (596)
T KOG1177|consen 147 KVGCKALFAPPQ 158 (596)
T ss_pred hcCeEEEEccch
Confidence 999999998864
No 350
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=45.75 E-value=2.3e+02 Score=25.72 Aligned_cols=54 Identities=28% Similarity=0.438 Sum_probs=39.0
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEE
Q 024022 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (274)
Q Consensus 63 g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 119 (274)
+.+.+|.+.+|. ..|..|.+++..|+.+|...++.+.. +..|.+.++.+|++-+
T Consensus 199 ~~~~~g~~VlV~-g~g~vG~~ai~lA~~~G~~~vi~~~~--~~~~~~~~~~~g~~~~ 252 (384)
T cd08265 199 GGFRPGAYVVVY-GAGPIGLAAIALAKAAGASKVIAFEI--SEERRNLAKEMGADYV 252 (384)
T ss_pred CCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEEcC--CHHHHHHHHHcCCCEE
Confidence 456777775565 57999999999999999854444433 3347788888998544
No 351
>PRK07985 oxidoreductase; Provisional
Probab=45.57 E-value=1.9e+02 Score=25.12 Aligned_cols=55 Identities=16% Similarity=0.165 Sum_probs=36.1
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCC-CC--HHHHHHHHHCCCEEEEeCC
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPST-YS--IERRIILRALGAEVYLADP 123 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~-~~--~~~~~~~~~~Ga~v~~~~~ 123 (274)
.+.+|+..+|.-|.++|....+.|.++++.-... .. +.....++..|.+++.+..
T Consensus 50 k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (294)
T PRK07985 50 RKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPG 107 (294)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEc
Confidence 4568888889999999999888999987654321 11 1112234456777765543
No 352
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=45.43 E-value=1.9e+02 Score=24.53 Aligned_cols=51 Identities=33% Similarity=0.453 Sum_probs=36.5
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCC
Q 024022 62 KGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGA 116 (274)
Q Consensus 62 ~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga 116 (274)
.+.+.+|.+.+|...+|..|.+++..++..|.+.+++.+.. +.+.++.+|+
T Consensus 139 ~~~~~~~~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~----~~~~~~~~g~ 189 (309)
T cd05289 139 LGGLKAGQTVLIHGAAGGVGSFAVQLAKARGARVIATASAA----NADFLRSLGA 189 (309)
T ss_pred hcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEecch----hHHHHHHcCC
Confidence 34466777755555578999999999999999976665432 4555677886
No 353
>PRK08265 short chain dehydrogenase; Provisional
Probab=45.38 E-value=1.9e+02 Score=24.48 Aligned_cols=53 Identities=13% Similarity=0.153 Sum_probs=34.4
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCC
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 123 (274)
.+.+|+..+|--|.++|......|.+++++-... ....+..+..+.++..+..
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~ 59 (261)
T PRK08265 7 KVAIVTGGATLIGAAVARALVAAGARVAIVDIDA--DNGAAVAASLGERARFIAT 59 (261)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHhCCeeEEEEe
Confidence 4558888888899999999888999876664432 1112233345766655543
No 354
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=45.35 E-value=2.1e+02 Score=24.95 Aligned_cols=56 Identities=30% Similarity=0.431 Sum_probs=38.9
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEe
Q 024022 62 KGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLA 121 (274)
Q Consensus 62 ~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~ 121 (274)
...+.++.+.++. .+|..|.+++..|+.+|.+++...+ +..+.+.++.+|++-+..
T Consensus 160 ~~~~~~~~~vli~-g~g~vG~~~~~la~~~G~~V~~~~~---s~~~~~~~~~~g~~~~~~ 215 (338)
T cd08254 160 AGEVKPGETVLVI-GLGGLGLNAVQIAKAMGAAVIAVDI---KEEKLELAKELGADEVLN 215 (338)
T ss_pred ccCCCCCCEEEEE-CCcHHHHHHHHHHHHcCCEEEEEcC---CHHHHHHHHHhCCCEEEc
Confidence 4556777775664 5688899999999999988544433 456677778888754443
No 355
>PRK09072 short chain dehydrogenase; Provisional
Probab=45.22 E-value=1.7e+02 Score=24.72 Aligned_cols=33 Identities=33% Similarity=0.433 Sum_probs=26.8
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPS 101 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~ 101 (274)
.+.+|+..+|-.|.+++......|.+++++...
T Consensus 6 ~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~ 38 (263)
T PRK09072 6 KRVLLTGASGGIGQALAEALAAAGARLLLVGRN 38 (263)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECC
Confidence 456888888889999999988899987776654
No 356
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=45.17 E-value=1.7e+02 Score=24.81 Aligned_cols=51 Identities=24% Similarity=0.272 Sum_probs=35.6
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCe-EEEEeCCCCCHHHHHHHHHCC
Q 024022 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYK-LIIIMPSTYSIERRIILRALG 115 (274)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~-~~i~~p~~~~~~~~~~~~~~G 115 (274)
+...+.+|.+.+|. ..|..|.++...|+.+|.+ ++++ . .+..+...++.+|
T Consensus 91 ~~~~~~~g~~vlI~-g~g~vg~~~i~~a~~~g~~~vi~~-~--~~~~~~~~~~~~g 142 (277)
T cd08255 91 RDAEPRLGERVAVV-GLGLVGLLAAQLAKAAGAREVVGV-D--PDAARRELAEALG 142 (277)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCcEEEE-C--CCHHHHHHHHHcC
Confidence 34566777775555 5788999999999999988 4433 2 2455666777777
No 357
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=45.15 E-value=1.3e+02 Score=26.81 Aligned_cols=47 Identities=23% Similarity=0.299 Sum_probs=33.6
Q ss_pred CCChHHHHHHHHHHHcCCeEEEEeCCCC--CHHHHHH-HHHCCCEEEEeC
Q 024022 76 TSGNTGIGLAFIAASRGYKLIIIMPSTY--SIERRII-LRALGAEVYLAD 122 (274)
Q Consensus 76 ssGN~g~alA~~a~~~g~~~~i~~p~~~--~~~~~~~-~~~~Ga~v~~~~ 122 (274)
-.+|..++++..++++|++++++.|+.- +...++. .+..|.++...+
T Consensus 160 d~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~ 209 (304)
T PRK00779 160 DGNNVANSLLLAAALLGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTH 209 (304)
T ss_pred CCCccHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEEc
Confidence 3578999999999999999999998753 2222332 456788876654
No 358
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=44.95 E-value=1e+02 Score=29.15 Aligned_cols=50 Identities=26% Similarity=0.363 Sum_probs=38.5
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC---------C---------HHHHHHHHHCCCEEEE
Q 024022 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTY---------S---------IERRIILRALGAEVYL 120 (274)
Q Consensus 71 ~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~---------~---------~~~~~~~~~~Ga~v~~ 120 (274)
.|+.-.+|-.|.+.|..+++.|.++++|-.... + ....+.++.+|.+++.
T Consensus 143 ~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~ 210 (467)
T TIGR01318 143 RVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHL 210 (467)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEEC
Confidence 488899999999999999999999888743321 1 1345677889998864
No 359
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=44.93 E-value=1.8e+02 Score=24.09 Aligned_cols=33 Identities=21% Similarity=0.314 Sum_probs=27.1
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPS 101 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~ 101 (274)
.+.+|+..+|..|.+++......|.+++++...
T Consensus 6 ~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~ 38 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFAAEGARVVVTDRN 38 (251)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 456888899999999999988889996666554
No 360
>PRK08017 oxidoreductase; Provisional
Probab=44.88 E-value=1.1e+02 Score=25.71 Aligned_cols=51 Identities=25% Similarity=0.321 Sum_probs=37.6
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCC
Q 024022 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (274)
Q Consensus 70 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 123 (274)
+.+|+..+|.-|.++|....+.|.+++++... ..+.+.++..|.+.+.++-
T Consensus 4 ~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~---~~~~~~~~~~~~~~~~~D~ 54 (256)
T PRK08017 4 SVLITGCSSGIGLEAALELKRRGYRVLAACRK---PDDVARMNSLGFTGILLDL 54 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCC---HHHhHHHHhCCCeEEEeec
Confidence 45788888999999999988889987665443 3455566667887777664
No 361
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=44.87 E-value=1.9e+02 Score=24.39 Aligned_cols=51 Identities=18% Similarity=0.150 Sum_probs=34.5
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHH-CCCEEEEeC
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRA-LGAEVYLAD 122 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~-~Ga~v~~~~ 122 (274)
.+.+|+..+|.-|.++|....+.|.+++++-.. ..+.+.+.. +|.++..+.
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~---~~~~~~l~~~~~~~~~~~~ 57 (262)
T TIGR03325 6 EVVLVTGGASGLGRAIVDRFVAEGARVAVLDKS---AAGLQELEAAHGDAVVGVE 57 (262)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHhhcCCceEEEE
Confidence 456888888889999999988899987765332 233444433 465665554
No 362
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=44.78 E-value=1.6e+02 Score=23.42 Aligned_cols=73 Identities=16% Similarity=0.155 Sum_probs=37.1
Q ss_pred EEEeCC--ChHHHHHHHHHHHcCCeEEEEe-----------CCC-CCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHH
Q 024022 72 LIELTS--GNTGIGLAFIAASRGYKLIIIM-----------PST-YSIERRIILRALGAEVYLADPAVGFEGFVKKGEEI 137 (274)
Q Consensus 72 vv~~ss--GN~g~alA~~a~~~g~~~~i~~-----------p~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~ 137 (274)
++..++ ||...+++-+....++|+++++ +.. ........++.++-....+....+. ..+++|.+.
T Consensus 62 v~~~~sG~gn~~~~l~~a~~~~~~Pvl~i~g~rg~~~~~~~~q~~~g~~~~~~l~~~~i~~~~i~~~e~~-~~i~~A~~~ 140 (157)
T TIGR03845 62 ILMQSSGLGNSINALASLNKTYGIPLPILASWRGVYKEKIPAQIPMGRATPKLLDTLGIPYTIPREPEEA-KLIEKAISD 140 (157)
T ss_pred EEEeCCcHHHHHHHHHHHHHcCCCCEEEEEeccCCCCCCCccccchhhhhHHHHHHcCCCeEEeCCHHHH-HHHHHHHHH
Confidence 444455 5655555554447899999999 331 1111222234444444444433334 555566555
Q ss_pred HHhCCCeE
Q 024022 138 LNRTPNGY 145 (274)
Q Consensus 138 ~~~~~~~~ 145 (274)
+.+.++.+
T Consensus 141 a~~~~gPv 148 (157)
T TIGR03845 141 AYENSRPV 148 (157)
T ss_pred HHhCCCCE
Confidence 54443433
No 363
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=44.77 E-value=2.2e+02 Score=25.08 Aligned_cols=66 Identities=18% Similarity=0.153 Sum_probs=40.2
Q ss_pred hhHHHHHHHHHHHHc-CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCE
Q 024022 48 KDRIAYSMIKDAEDK-GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAE 117 (274)
Q Consensus 48 K~R~a~~~~~~a~~~-g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~ 117 (274)
-.-.+...+..+.+. +.-..|. +++....|+.|.++|..++.+|.+++++-+. ..+......+|.+
T Consensus 130 ~~~~Ae~ai~~al~~~~~~l~gk-~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~---~~~~~~~~~~g~~ 196 (287)
T TIGR02853 130 SIPTAEGAIMMAIEHTDFTIHGS-NVMVLGFGRTGMTIARTFSALGARVFVGARS---SADLARITEMGLI 196 (287)
T ss_pred cHhHHHHHHHHHHHhcCCCCCCC-EEEEEcChHHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHCCCe
Confidence 344455555555543 2222333 4777888999999999999999876655443 2344444556654
No 364
>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional
Probab=44.73 E-value=2.2e+02 Score=26.68 Aligned_cols=53 Identities=19% Similarity=0.061 Sum_probs=37.6
Q ss_pred EEEeCCChHHHHHHHHHHH------cCC--eEEEEeCCCCCHHHHHHHHHCCCEEEEeCCC
Q 024022 72 LIELTSGNTGIGLAFIAAS------RGY--KLIIIMPSTYSIERRIILRALGAEVYLADPA 124 (274)
Q Consensus 72 vv~~ssGN~g~alA~~a~~------~g~--~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~ 124 (274)
++..++|..+..+|+.+.. .++ .-.|++|..+-......+..+|++++.++-+
T Consensus 81 ~v~~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~~v~~~G~~pv~vdvd 141 (438)
T PRK15407 81 ALLVNSGSSANLLAFSALTSPKLGDRALKPGDEVITVAAGFPTTVNPIIQNGLVPVFVDVE 141 (438)
T ss_pred EEEECCHHHHHHHHHHHHhhccccccCCCCCCEEEECCCCcHHHHHHHHHcCCEEEEEecC
Confidence 6777778888777776541 132 2457788766677778888899999988753
No 365
>PRK05854 short chain dehydrogenase; Provisional
Probab=44.64 E-value=2e+02 Score=25.37 Aligned_cols=73 Identities=19% Similarity=0.244 Sum_probs=41.1
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHH-C-CCEEEEeCCC-CChhHHHHHHHHHHHhC
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRA-L-GAEVYLADPA-VGFEGFVKKGEEILNRT 141 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~-~~~~~~~~~-~-Ga~v~~~~~~-~~~~~~~~~a~~~~~~~ 141 (274)
.+.+|+..++--|.++|..-.+.|.++++....... ...++.++. . +.++..+..+ .+.++..+.+.++.++.
T Consensus 15 k~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~ 91 (313)
T PRK05854 15 KRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEG 91 (313)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhC
Confidence 455788888888888888888889887776553211 111223332 2 4455544322 23445555555554443
No 366
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.45 E-value=2.1e+02 Score=24.75 Aligned_cols=59 Identities=20% Similarity=0.171 Sum_probs=42.4
Q ss_pred CceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 024022 31 VARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPS 101 (274)
Q Consensus 31 g~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~ 101 (274)
+.++++-.+++ ..+-+-+.+ +.. + |...++..+-.+||.+..+--|++.|..+.|.||=
T Consensus 28 ~~klaIVIddl--G~~~~~~~~---i~~------L-p~eVTlA~~P~~~~~~~~~~~A~~~G~evlih~Pm 86 (250)
T COG2861 28 GPKLAIVIDDL--GLSQTGTQA---ILA------L-PPEVTLAFAPFAPHAREWAQKARNAGHEVLIHMPM 86 (250)
T ss_pred CceEEEEECCc--cccHHHHHH---HHh------C-CccceEEecCCCchhHHHHHHHHhcCCEEEEeccC
Confidence 46899999887 333333321 111 1 11344788899999999999999999999999994
No 367
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=44.40 E-value=1.3e+02 Score=25.02 Aligned_cols=58 Identities=26% Similarity=0.377 Sum_probs=31.6
Q ss_pred CCcchHhhhhchHHHHH----HhhC------CCCCEEEEecC-CcccHHHHH----HHHHhhCCCcEEEEEec
Q 024022 152 NPANPEIHYETTGPEIW----NDSG------GKVDAFIAGIG-TGGTVTGAG----RFLKEKNPNIKVYGIEP 209 (274)
Q Consensus 152 ~~~~~~~g~~t~~~Ei~----~q~~------~~~d~iv~~vG-~Gg~~~Gi~----~~~k~~~~~~~vigve~ 209 (274)
.-.++..||.+.+.+++ +++. ..+|.|++..| +|||=+|++ ..+++.+|+..++++-.
T Consensus 91 ~g~n~~~G~~~~~~~~~~~~~~~ir~~~e~~d~~~~~~i~~slgGGTGSG~~~~l~~~l~~~y~~~~~~~~~i 163 (216)
T PF00091_consen 91 SGNNWAVGYYTFGEEALEEILEQIRKEIEKCDSLDGFFIVHSLGGGTGSGLGPVLAEMLREEYPKKPIISFSI 163 (216)
T ss_dssp STTSHHHHHHHHHHHHHHHHHHHHHHHHHTSTTESEEEEEEESSSSHHHHHHHHHHHHHHHTSTTSEEEEEEE
T ss_pred ccccccccccccccccccccccccchhhccccccccceecccccceeccccccccchhhhccccccceeeccc
Confidence 34445568776544443 2221 34777766655 444555554 34466677766666543
No 368
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=44.40 E-value=77 Score=26.86 Aligned_cols=55 Identities=16% Similarity=0.155 Sum_probs=39.0
Q ss_pred CCCCCCCeEEEEeCCCh----HHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCE
Q 024022 63 GLITPGKTVLIELTSGN----TGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAE 117 (274)
Q Consensus 63 g~~~~g~~~vv~~ssGN----~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~ 117 (274)
|-+.+|...+|+...|. .+..+++.+.+.|-+|+.|.-+..+..-++.++.+|-+
T Consensus 16 GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~i~~~~~~~g~~ 74 (237)
T TIGR03877 16 GGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQVRRNMAQFGWD 74 (237)
T ss_pred CCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHHHHHHHHHhCCC
Confidence 44677777777776554 45555665557799998888887777777778888864
No 369
>PRK13243 glyoxylate reductase; Reviewed
Probab=44.21 E-value=2.1e+02 Score=25.84 Aligned_cols=96 Identities=23% Similarity=0.248 Sum_probs=59.1
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCC
Q 024022 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQF 150 (274)
Q Consensus 71 ~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 150 (274)
+|..-..|+.|.++|..++.+|++++++=+.. ... ....+|.+. . +++ ++.++- +...++-
T Consensus 152 tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~-~~~---~~~~~~~~~--~----~l~-------ell~~a-DiV~l~l- 212 (333)
T PRK13243 152 TIGIIGFGRIGQAVARRAKGFGMRILYYSRTR-KPE---AEKELGAEY--R----PLE-------ELLRES-DFVSLHV- 212 (333)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCEEEEECCCC-Chh---hHHHcCCEe--c----CHH-------HHHhhC-CEEEEeC-
Confidence 47777889999999999999999877665532 221 123345421 1 122 233333 3443322
Q ss_pred CCCcchHhhhhchHHHHHHhhCCCCCEEEEecCCcccHHH
Q 024022 151 ENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGGTVTG 190 (274)
Q Consensus 151 ~~~~~~~~g~~t~~~Ei~~q~~~~~d~iv~~vG~Gg~~~G 190 (274)
|...+ -...+..+.++++ +++.+++=++.|+.+--
T Consensus 213 --P~t~~-T~~~i~~~~~~~m--k~ga~lIN~aRg~~vd~ 247 (333)
T PRK13243 213 --PLTKE-TYHMINEERLKLM--KPTAILVNTARGKVVDT 247 (333)
T ss_pred --CCChH-HhhccCHHHHhcC--CCCeEEEECcCchhcCH
Confidence 33331 3344566888888 47899999999998743
No 370
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=44.13 E-value=51 Score=32.70 Aligned_cols=51 Identities=24% Similarity=0.307 Sum_probs=38.5
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC---------C---------HHHHHHHHHCCCEEEE
Q 024022 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTY---------S---------IERRIILRALGAEVYL 120 (274)
Q Consensus 70 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~---------~---------~~~~~~~~~~Ga~v~~ 120 (274)
+.|+.-.+|-.|.+.|...++.|.+++||=.... + ....+.++.+|.+++.
T Consensus 328 ~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~ 396 (654)
T PRK12769 328 KRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFEL 396 (654)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEEC
Confidence 3489999999999999999999999888854321 1 1235567788988764
No 371
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein
Probab=43.93 E-value=1.2e+02 Score=26.79 Aligned_cols=53 Identities=25% Similarity=0.263 Sum_probs=33.7
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCC
Q 024022 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPA 124 (274)
Q Consensus 72 vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~ 124 (274)
++..++|..+..++..+-..+-.-.|++|..........++..|++++.++.+
T Consensus 36 ~~~~~sgt~al~~~l~~l~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~ 88 (352)
T cd00616 36 AVAVSSGTAALHLALRALGIGPGDEVIVPSFTFVATANAILLLGATPVFVDID 88 (352)
T ss_pred EEEECCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHHHHHHHcCCeEEEEecC
Confidence 55556676665555444322333467777766666677788889998887643
No 372
>PRK01688 histidinol-phosphate aminotransferase; Provisional
Probab=43.93 E-value=2.4e+02 Score=25.27 Aligned_cols=86 Identities=13% Similarity=0.038 Sum_probs=42.9
Q ss_pred EEEeCCChHHHHHHHHHHHcCCe-EEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCC
Q 024022 72 LIELTSGNTGIGLAFIAASRGYK-LIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQF 150 (274)
Q Consensus 72 vv~~ssGN~g~alA~~a~~~g~~-~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 150 (274)
|+...++..+..++..+- .+-. -.|+++.-+-..-....+.+|++++.++-+.++.-..+...+...+ ....|+.
T Consensus 77 I~~~~Gs~e~i~~~~~~~-~~~g~~~vli~~P~y~~y~~~~~~~G~~~~~v~~~~~~~~d~~~l~~~~~~-~~lv~l~-- 152 (351)
T PRK01688 77 VLVSRGADEGIELLIRAF-CEPGKDAILYCPPTYGMYSVSAETIGVEIRTVPTLDNWQLDLPAIADNLDG-VKVVYVC-- 152 (351)
T ss_pred EEEcCCHHHHHHHHHHHh-cCCCCCEEEEcCCCHHHHHHHHHHcCCEEEEeecCCCCCCCHHHHHHhccC-CcEEEEe--
Confidence 665555666666555432 2221 3444444333344566788999999887533232112222222222 2566663
Q ss_pred CCCcchHhhhhch
Q 024022 151 ENPANPEIHYETT 163 (274)
Q Consensus 151 ~~~~~~~~g~~t~ 163 (274)
||.|+ .|....
T Consensus 153 -nPnNP-TG~~~~ 163 (351)
T PRK01688 153 -SPNNP-TGNLIN 163 (351)
T ss_pred -CCCCC-CCCCCC
Confidence 55565 354443
No 373
>PRK09242 tropinone reductase; Provisional
Probab=43.88 E-value=1.9e+02 Score=24.18 Aligned_cols=56 Identities=21% Similarity=0.156 Sum_probs=35.9
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHH-HHHHHHHC--CCEEEEeCCC
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIE-RRIILRAL--GAEVYLADPA 124 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~-~~~~~~~~--Ga~v~~~~~~ 124 (274)
++.+|+..+|..|.++|......|.+++++........ ....++.. +.++..+..+
T Consensus 10 k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D 68 (257)
T PRK09242 10 QTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAAD 68 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECC
Confidence 45578888888999999998889998766654321111 12233333 6777766543
No 374
>PRK05717 oxidoreductase; Validated
Probab=43.84 E-value=1.9e+02 Score=24.18 Aligned_cols=53 Identities=15% Similarity=0.330 Sum_probs=34.7
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCC
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 123 (274)
.+.+|+..+|.-|.++|......|.+++++-... .......+..+.+++.+..
T Consensus 11 k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~ 63 (255)
T PRK05717 11 RVALVTGAARGIGLGIAAWLIAEGWQVVLADLDR--ERGSKVAKALGENAWFIAM 63 (255)
T ss_pred CEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCH--HHHHHHHHHcCCceEEEEc
Confidence 4668888999999999999888898877653321 1112233445666655543
No 375
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=43.64 E-value=89 Score=27.65 Aligned_cols=72 Identities=17% Similarity=0.106 Sum_probs=43.0
Q ss_pred CCC-ceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 024022 29 GCV-ARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPS 101 (274)
Q Consensus 29 ~~g-~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~ 101 (274)
..| +|-.++.++-.-.|-+.|-............+...+|.+ ++...+|-+++|++++....|.+-+.++.+
T Consensus 86 ~iGAVNTl~~~~~g~l~G~NTD~~G~~~~L~~~~~~~~~~~~~-vlilGAGGAarAv~~aL~~~g~~~i~V~NR 158 (283)
T COG0169 86 LIGAVNTLVREDDGKLRGYNTDGIGFLRALKEFGLPVDVTGKR-VLILGAGGAARAVAFALAEAGAKRITVVNR 158 (283)
T ss_pred HhCCceEEEEccCCEEEEEcCCHHHHHHHHHhcCCCcccCCCE-EEEECCcHHHHHHHHHHHHcCCCEEEEEeC
Confidence 356 566655554555677777544333222111112223444 777788889999999999999765555554
No 376
>PRK09414 glutamate dehydrogenase; Provisional
Probab=43.64 E-value=1.1e+02 Score=28.89 Aligned_cols=53 Identities=13% Similarity=-0.063 Sum_probs=39.0
Q ss_pred hhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeC
Q 024022 48 KDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMP 100 (274)
Q Consensus 48 K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p 100 (274)
--||..+.+..+.+.........+|+....||-|..+|.....+|.+++.+..
T Consensus 211 Tg~Gv~~~~~~~~~~~~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsD 263 (445)
T PRK09414 211 TGYGLVYFAEEMLKARGDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSD 263 (445)
T ss_pred ccHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEc
Confidence 45678888877765433333335599999999999999998888888777765
No 377
>PRK07774 short chain dehydrogenase; Provisional
Probab=43.52 E-value=1.9e+02 Score=23.99 Aligned_cols=54 Identities=19% Similarity=0.191 Sum_probs=35.4
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHH-HHHHHHCCCEEEEeC
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIER-RIILRALGAEVYLAD 122 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~-~~~~~~~Ga~v~~~~ 122 (274)
.+.+|+..+|--|.+++......|.+++++-.......+ .+.++..+.+++.+.
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~ 61 (250)
T PRK07774 7 KVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADGGTAIAVQ 61 (250)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 455888888999999999988899988776554222111 233444565665443
No 378
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=43.33 E-value=71 Score=23.79 Aligned_cols=83 Identities=24% Similarity=0.370 Sum_probs=48.4
Q ss_pred hHHHHHHhhCCCCCEEEEecCCcccHHHHHHHHHhhCCCcEEEEEecCCCccccCCCCcccccccCCCCCCccccccccc
Q 024022 163 TGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAML 242 (274)
Q Consensus 163 ~~~Ei~~q~~~~~d~iv~~vG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~ 242 (274)
.+.++.++++ ...|++..-+|.+. +.+....|...|+++.+..... +.+ .|-.+..|..+.....
T Consensus 7 aa~~~A~~~~--ak~Ivv~T~sG~ta----~~isk~RP~~pIiavt~~~~~~--------r~l-~l~~GV~p~~~~~~~~ 71 (117)
T PF02887_consen 7 AAVELAEDLN--AKAIVVFTESGRTA----RLISKYRPKVPIIAVTPNESVA--------RQL-SLYWGVYPVLIEEFDK 71 (117)
T ss_dssp HHHHHHHHHT--ESEEEEE-SSSHHH----HHHHHT-TSSEEEEEESSHHHH--------HHG-GGSTTEEEEECSSHSH
T ss_pred HHHHHHHhcC--CCEEEEECCCchHH----HHHHhhCCCCeEEEEcCcHHHH--------hhh-hcccceEEEEeccccc
Confidence 3557777873 68999999998885 4455567999999998765421 000 1222222322222111
Q ss_pred CeEEEeCHHHHHHHHHHHHHHcCC
Q 024022 243 DEVITVSSEEAIETSKLLALKEGL 266 (274)
Q Consensus 243 d~~v~v~d~e~~~a~~~l~~~eGi 266 (274)
| .++.++.+..++++.|+
T Consensus 72 ~------~~~~~~~a~~~~~~~g~ 89 (117)
T PF02887_consen 72 D------TEELIAEALEYAKERGL 89 (117)
T ss_dssp S------HHHHHHHHHHHHHHTTS
T ss_pred c------HHHHHHHHHHHHHHcCC
Confidence 2 56667777777777787
No 379
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=43.05 E-value=1.3e+02 Score=28.43 Aligned_cols=50 Identities=22% Similarity=0.198 Sum_probs=38.7
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC--------------C----HHHHHHHHHCCCEEEE
Q 024022 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTY--------------S----IERRIILRALGAEVYL 120 (274)
Q Consensus 71 ~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~--------------~----~~~~~~~~~~Ga~v~~ 120 (274)
.|+.-.+|..|.+.|..+++.|.++++|-.... + ...++.++.+|.+++.
T Consensus 145 ~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~ 212 (471)
T PRK12810 145 KVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRT 212 (471)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEe
Confidence 488889999999999999999999998864321 1 1235667889988864
No 380
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=42.85 E-value=1.2e+02 Score=28.12 Aligned_cols=56 Identities=30% Similarity=0.414 Sum_probs=38.0
Q ss_pred CCchhhHHHHHHHHHHHHcCCCCCCCeEEEEe--CCChHHHHHHHHHHHcC--CeEEEEeCC
Q 024022 44 CSSVKDRIAYSMIKDAEDKGLITPGKTVLIEL--TSGNTGIGLAFIAASRG--YKLIIIMPS 101 (274)
Q Consensus 44 tGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~--ssGN~g~alA~~a~~~g--~~~~i~~p~ 101 (274)
-|-.|.|-|..++-++.++|++. |...+++. ++|-++.|+|. |+.+| +|++.....
T Consensus 27 VGQ~~AReAagiiv~mIk~~K~a-Gr~iLiaGppGtGKTAlA~~i-a~eLG~~~PF~~isgS 86 (398)
T PF06068_consen 27 VGQEKAREAAGIIVDMIKEGKIA-GRAILIAGPPGTGKTALAMAI-AKELGEDVPFVSISGS 86 (398)
T ss_dssp ES-HHHHHHHHHHHHHHHTT--T-T-EEEEEE-TTSSHHHHHHHH-HHHCTTTS-EEEEEGG
T ss_pred cChHHHHHHHHHHHHHHhccccc-CcEEEEeCCCCCCchHHHHHH-HHHhCCCCCeeEcccc
Confidence 47889999999999999998864 33334433 77888887776 66776 888777654
No 381
>PRK07576 short chain dehydrogenase; Provisional
Probab=42.84 E-value=2.1e+02 Score=24.31 Aligned_cols=54 Identities=19% Similarity=0.134 Sum_probs=35.1
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHCCCEEEEeC
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLAD 122 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~ 122 (274)
.+.+|+..+|.-|.++|......|.+++++-..... ....+.+...+.+++.+.
T Consensus 10 k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 64 (264)
T PRK07576 10 KNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGPEGLGVS 64 (264)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEE
Confidence 455788888889999999888889987666543211 111234555566665544
No 382
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=42.83 E-value=2e+02 Score=25.83 Aligned_cols=52 Identities=27% Similarity=0.316 Sum_probs=34.1
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCE
Q 024022 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAE 117 (274)
Q Consensus 63 g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~ 117 (274)
..+.++.+.+|. .+|..|.+++..|+.+|.+.++++.. +..+.+.++.+|++
T Consensus 183 ~~~~~g~~VlI~-g~g~vG~~~~~lak~~G~~~vi~~~~--s~~~~~~~~~~g~~ 234 (367)
T cd08263 183 ADVRPGETVAVI-GVGGVGSSAIQLAKAFGASPIIAVDV--RDEKLAKAKELGAT 234 (367)
T ss_pred ccCCCCCEEEEE-CCcHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHhCCc
Confidence 344566665555 57888999888999999884444432 34555666667763
No 383
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=42.74 E-value=1.7e+02 Score=25.43 Aligned_cols=72 Identities=18% Similarity=0.182 Sum_probs=35.0
Q ss_pred hhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHH-----HHHHHHHcCCeEEEEeCCCC--CHHHHHHHHHCCCEEEE
Q 024022 48 KDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIG-----LAFIAASRGYKLIIIMPSTY--SIERRIILRALGAEVYL 120 (274)
Q Consensus 48 K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a-----lA~~a~~~g~~~~i~~p~~~--~~~~~~~~~~~Ga~v~~ 120 (274)
+....+.++....+... ...++..+--|.-.. ..-.|+..|++-+|+.+-.. ...-...++.+|-+.+.
T Consensus 72 ~~~~~~~~~~~~r~~~~----~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~~~gl~~I~ 147 (258)
T PRK13111 72 TLADVFELVREIREKDP----TIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAAKKHGLDLIF 147 (258)
T ss_pred CHHHHHHHHHHHHhcCC----CCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHcCCcEEE
Confidence 34445555555442321 122555565564222 34446667777776632211 11224455667766654
Q ss_pred -eCC
Q 024022 121 -ADP 123 (274)
Q Consensus 121 -~~~ 123 (274)
+.+
T Consensus 148 lvap 151 (258)
T PRK13111 148 LVAP 151 (258)
T ss_pred EeCC
Confidence 554
No 384
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=42.72 E-value=1.9e+02 Score=23.79 Aligned_cols=55 Identities=20% Similarity=0.244 Sum_probs=35.9
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCH--HHHHHHHHCCCEEEEeCC
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSI--ERRIILRALGAEVYLADP 123 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~--~~~~~~~~~Ga~v~~~~~ 123 (274)
.+.+|+..+|..|..+|......|.++++++..+... .....++..+.++..+..
T Consensus 6 ~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 62 (247)
T PRK05565 6 KVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEGGDAIAVKA 62 (247)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEC
Confidence 3558888889999999998888899877763433221 122334445667766554
No 385
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=42.56 E-value=1.3e+02 Score=27.24 Aligned_cols=33 Identities=18% Similarity=0.368 Sum_probs=17.6
Q ss_pred CCCEEEEecCCcccHHHHHHHHHhhCCCcEEEEEec
Q 024022 174 KVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEP 209 (274)
Q Consensus 174 ~~d~iv~~vG~Gg~~~Gi~~~~k~~~~~~~vigve~ 209 (274)
++| +|+++|+|.. .=+++++.... ..++|.|-.
T Consensus 77 ~~d-~IIavGGGs~-~D~aK~ia~~~-~~p~i~VPT 109 (349)
T cd08550 77 EAD-VIIGVGGGKT-LDTAKAVADRL-DKPIVIVPT 109 (349)
T ss_pred CCC-EEEEecCcHH-HHHHHHHHHHc-CCCEEEeCC
Confidence 456 5677776554 45555554322 345666644
No 386
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=42.53 E-value=1.7e+02 Score=26.06 Aligned_cols=85 Identities=13% Similarity=0.052 Sum_probs=49.7
Q ss_pred HHHHHHHHcCCeEEEEeC---CC-CCHH----HHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCC-eEeeCCCCCC
Q 024022 83 GLAFIAASRGYKLIIIMP---ST-YSIE----RRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPN-GYILGQFENP 153 (274)
Q Consensus 83 alA~~a~~~g~~~~i~~p---~~-~~~~----~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~ 153 (274)
+..|.++++|++.+-++. +. .+.. -++.++..+.++++++... . -+.++.++++.+. ..+++++...
T Consensus 212 af~Yf~~~ygl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~If~e~~~--~--~~~~~~la~e~g~~v~~ldpl~~~ 287 (311)
T PRK09545 212 AYGYFEKHYGLTPLGHFTVNPEIQPGAQRLHEIRTQLVEQKATCVFAEPQF--R--PAVIESVAKGTSVRMGTLDPLGTN 287 (311)
T ss_pred hHHHHHHhCCCceeeeeccCCCCCCCHHHHHHHHHHHHHcCCCEEEecCCC--C--hHHHHHHHHhcCCeEEEecccccc
Confidence 788999999999875542 22 2222 2556778999999998642 2 2455556665532 2345566543
Q ss_pred cchH-hhhhchHHHHHHhh
Q 024022 154 ANPE-IHYETTGPEIWNDS 171 (274)
Q Consensus 154 ~~~~-~g~~t~~~Ei~~q~ 171 (274)
.... ..|..+..+.++++
T Consensus 288 ~~~~~~~Y~~~m~~n~~~l 306 (311)
T PRK09545 288 IKLGKDSYSEFLSQLANQY 306 (311)
T ss_pred ccCCHhHHHHHHHHHHHHH
Confidence 3221 24555555555544
No 387
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=42.40 E-value=2.1e+02 Score=24.15 Aligned_cols=67 Identities=18% Similarity=0.132 Sum_probs=36.7
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHH
Q 024022 39 EMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILR 112 (274)
Q Consensus 39 E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~ 112 (274)
-+.||-- -||-...+..+++.|. .--+|.---=--+..+=..|+..|+..+..+...+++++.+.+.
T Consensus 102 gYYNPIl---~yG~e~~iq~ak~aGa----nGfiivDlPpEEa~~~Rne~~k~gislvpLvaPsTtdeRmell~ 168 (268)
T KOG4175|consen 102 GYYNPIL---RYGVENYIQVAKNAGA----NGFIIVDLPPEEAETLRNEARKHGISLVPLVAPSTTDERMELLV 168 (268)
T ss_pred ecccHHH---hhhHHHHHHHHHhcCC----CceEeccCChHHHHHHHHHHHhcCceEEEeeCCCChHHHHHHHH
Confidence 3445543 2455666667666664 11122222233455566667777777776666666666655553
No 388
>PRK14031 glutamate dehydrogenase; Provisional
Probab=42.38 E-value=1.2e+02 Score=28.83 Aligned_cols=54 Identities=15% Similarity=-0.029 Sum_probs=40.5
Q ss_pred hhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 024022 48 KDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPS 101 (274)
Q Consensus 48 K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~ 101 (274)
=-||..+.+..+.+...+....++++....||-|..+|.....+|.+++.+.+.
T Consensus 207 Tg~Gv~~~~~~~~~~~g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~ 260 (444)
T PRK14031 207 TGYGNIYFLMEMLKTKGTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDS 260 (444)
T ss_pred cHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 346787877776543322333345899999999999999999999999988873
No 389
>KOG3857 consensus Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=42.35 E-value=88 Score=28.65 Aligned_cols=24 Identities=17% Similarity=0.072 Sum_probs=11.2
Q ss_pred EeCHHHHHHHHHHHHHHcCCEecc
Q 024022 247 TVSSEEAIETSKLLALKEGLLQRQ 270 (274)
Q Consensus 247 ~v~d~e~~~a~~~l~~~eGi~~g~ 270 (274)
.=.|+|+..-|.....-.|+--|.
T Consensus 297 ~p~d~eARt~M~~As~~aG~gFgN 320 (465)
T KOG3857|consen 297 DPKDEEARTDMHYASYLAGMGFGN 320 (465)
T ss_pred CCccHHHHHHHHHHHHhhccccCc
Confidence 334555555554444444444443
No 390
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=42.33 E-value=1.7e+02 Score=26.15 Aligned_cols=46 Identities=20% Similarity=0.283 Sum_probs=32.4
Q ss_pred CChHHHHHHHHHHHcCCeEEEEeCCCC--CHHHHHH----HHHCCCEEEEeC
Q 024022 77 SGNTGIGLAFIAASRGYKLIIIMPSTY--SIERRII----LRALGAEVYLAD 122 (274)
Q Consensus 77 sGN~g~alA~~a~~~g~~~~i~~p~~~--~~~~~~~----~~~~Ga~v~~~~ 122 (274)
.+|..+|++.+++++|+.++++.|+.. +....+. .+..|+++...+
T Consensus 157 ~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 208 (304)
T TIGR00658 157 GNNVCNSLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTH 208 (304)
T ss_pred CCchHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 368899999999999999999988743 2333333 345788877664
No 391
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=42.25 E-value=2.3e+02 Score=24.66 Aligned_cols=66 Identities=21% Similarity=0.176 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHcCCCCCCCeEEEEe-CCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCC-EEEEe
Q 024022 51 IAYSMIKDAEDKGLITPGKTVLIEL-TSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGA-EVYLA 121 (274)
Q Consensus 51 ~a~~~~~~a~~~g~~~~g~~~vv~~-ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga-~v~~~ 121 (274)
|....+.++.+.|. +- ++.. -.=.+..-+...|+..|++.+.+++.+++..+++.+..... =|+.+
T Consensus 107 G~e~F~~~~~~aGv----dg-viipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~gFIY~v 174 (263)
T CHL00200 107 GINKFIKKISQAGV----KG-LIIPDLPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPGCIYLV 174 (263)
T ss_pred CHHHHHHHHHHcCC----eE-EEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCcEEEE
Confidence 44555666666664 22 3322 22245555666667777777777766666666665554443 34443
No 392
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=42.06 E-value=2.2e+02 Score=24.28 Aligned_cols=55 Identities=31% Similarity=0.478 Sum_probs=36.9
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEE
Q 024022 62 KGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (274)
Q Consensus 62 ~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 119 (274)
...+.++.+.+|...+|..|.+++..++.+|.+.+++... ..+.+.++.+|++.+
T Consensus 134 ~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~~ 188 (323)
T cd08241 134 RARLQPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASS---EEKLALARALGADHV 188 (323)
T ss_pred hcCCCCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCC---HHHHHHHHHcCCcee
Confidence 3456666675665566889999999999999885544332 345556666776443
No 393
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=41.97 E-value=1.6e+02 Score=27.03 Aligned_cols=28 Identities=14% Similarity=0.431 Sum_probs=16.2
Q ss_pred HHHHHHhhCCCCCEEEEecCCcccHHHHHHHH
Q 024022 164 GPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFL 195 (274)
Q Consensus 164 ~~Ei~~q~~~~~d~iv~~vG~Gg~~~Gi~~~~ 195 (274)
+.|++++. ++|. |+++|+|+.+ =+++++
T Consensus 80 ~~~~~~~~--~~D~-IiaiGGGS~i-D~AK~i 107 (383)
T PRK09860 80 GLKLLKEN--NCDS-VISLGGGSPH-DCAKGI 107 (383)
T ss_pred HHHHHHHc--CCCE-EEEeCCchHH-HHHHHH
Confidence 44555554 4674 6788877654 444444
No 394
>PRK11609 nicotinamidase/pyrazinamidase; Provisional
Probab=41.94 E-value=2e+02 Score=23.77 Aligned_cols=58 Identities=16% Similarity=0.208 Sum_probs=39.8
Q ss_pred HHcCCCCCCCeEEEEeCCChHH-HHHHHHHHHcCCeEEEEeCCCCC--------HHHHHHHHHCCCEEEEe
Q 024022 60 EDKGLITPGKTVLIELTSGNTG-IGLAFIAASRGYKLIIIMPSTYS--------IERRIILRALGAEVYLA 121 (274)
Q Consensus 60 ~~~g~~~~g~~~vv~~ssGN~g-~alA~~a~~~g~~~~i~~p~~~~--------~~~~~~~~~~Ga~v~~~ 121 (274)
.+.|. .+.+++.-..|.+ .+.|.-|..+|++++++-+...+ ..-++.|+..|++|+..
T Consensus 138 ~~~gi----~~lii~G~~T~~CV~~Ta~dA~~~gy~v~v~~Da~a~~~~~~~~~~~al~~~~~~~~~v~t~ 204 (212)
T PRK11609 138 REHGI----TELIVMGLATDYCVKFTVLDALALGYQVNVITDGCRGVNLQPQDSAHAFMEMSAAGATLYTL 204 (212)
T ss_pred HHcCC----CEEEEEEeccCHHHHHHHHHHHHCCCEEEEEeeccCCCCCCchhHHHHHHHHHHCCCEEEEH
Confidence 44564 4556666777777 56677799999999988875432 12366677788888744
No 395
>CHL00194 ycf39 Ycf39; Provisional
Probab=41.92 E-value=1.1e+02 Score=26.90 Aligned_cols=31 Identities=19% Similarity=0.339 Sum_probs=26.5
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 024022 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPS 101 (274)
Q Consensus 71 ~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~ 101 (274)
.+|+..+|..|..++......|.+++++...
T Consensus 3 IlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~ 33 (317)
T CHL00194 3 LLVIGATGTLGRQIVRQALDEGYQVRCLVRN 33 (317)
T ss_pred EEEECCCcHHHHHHHHHHHHCCCeEEEEEcC
Confidence 4788899999999999988889998888764
No 396
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=41.90 E-value=1.9e+02 Score=24.38 Aligned_cols=55 Identities=15% Similarity=0.084 Sum_probs=35.2
Q ss_pred CeEEEEeCC--ChHHHHHHHHHHHcCCeEEEEeC----CCC----CH----HHHHHHHHCCCEEEEeCC
Q 024022 69 KTVLIELTS--GNTGIGLAFIAASRGYKLIIIMP----STY----SI----ERRIILRALGAEVYLADP 123 (274)
Q Consensus 69 ~~~vv~~ss--GN~g~alA~~a~~~g~~~~i~~p----~~~----~~----~~~~~~~~~Ga~v~~~~~ 123 (274)
.+.+|+..+ +.-|.++|......|.++++... ... .. ...+.++..|.++..+..
T Consensus 7 k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 75 (256)
T PRK12859 7 KVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVKVSSMEL 75 (256)
T ss_pred cEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcCCeEEEEEc
Confidence 455677665 47999999998889998776531 110 11 123446677888876654
No 397
>PRK07904 short chain dehydrogenase; Provisional
Probab=41.90 E-value=2.1e+02 Score=24.13 Aligned_cols=54 Identities=15% Similarity=0.161 Sum_probs=33.7
Q ss_pred CeEEEEeCCChHHHHHHHHHHHc-CCeEEEEeCCCCC--HHHHHHHHHCCC-EEEEeC
Q 024022 69 KTVLIELTSGNTGIGLAFIAASR-GYKLIIIMPSTYS--IERRIILRALGA-EVYLAD 122 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~-g~~~~i~~p~~~~--~~~~~~~~~~Ga-~v~~~~ 122 (274)
.+.+|+..+|-.|.++|....+. |.+++++.....+ ....+.++..|. ++..+.
T Consensus 9 ~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~ 66 (253)
T PRK07904 9 QTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVID 66 (253)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEE
Confidence 45577788888999999886666 4888777654322 122344555554 554443
No 398
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=41.81 E-value=1.3e+02 Score=29.08 Aligned_cols=54 Identities=15% Similarity=-0.023 Sum_probs=40.4
Q ss_pred CCeEEEEeCC---ChHHHHHHHHHHHcC-CeEEEEeCCCC--CHHHHHHHHHCCCEEEEeC
Q 024022 68 GKTVLIELTS---GNTGIGLAFIAASRG-YKLIIIMPSTY--SIERRIILRALGAEVYLAD 122 (274)
Q Consensus 68 g~~~vv~~ss---GN~g~alA~~a~~~g-~~~~i~~p~~~--~~~~~~~~~~~Ga~v~~~~ 122 (274)
|.+ |+.... +|.+.|++..++++| ++++++.|+.- ++..++.++..|+.+....
T Consensus 174 glk-Va~vGD~~~~rva~Sl~~~l~~~g~~~v~l~~P~~~~~p~~~~~~a~~~G~~v~i~~ 233 (525)
T PRK13376 174 FIH-IALVGDLLHGRTVHSKVNGLKIFKNVKVDLIAPEELAMPEHYVEKMKKNGFEVRIFS 233 (525)
T ss_pred CCE-EEEECCCCCCcHHHHHHHHHHhcCCcEEEEECCccccCCHHHHHHHHHcCCeEEEEc
Confidence 434 444444 799999999999998 99999999854 4555566677888887664
No 399
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=41.76 E-value=2e+02 Score=26.08 Aligned_cols=56 Identities=29% Similarity=0.303 Sum_probs=38.9
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHC-CCEEE
Q 024022 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRAL-GAEVY 119 (274)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~-Ga~v~ 119 (274)
+...+.+|.+.+|. .+|-.|..++..|+..|...++.+.. ++.+.+.++.+ |++++
T Consensus 178 ~~~~~~~g~~VlV~-g~G~vG~~~~~la~~~g~~~vi~~~~--~~~~~~~~~~~~~~~vi 234 (386)
T cd08283 178 ELAEVKPGDTVAVW-GCGPVGLFAARSAKLLGAERVIAIDR--VPERLEMARSHLGAETI 234 (386)
T ss_pred hhccCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEEcC--CHHHHHHHHHcCCcEEE
Confidence 44556677774555 56888999999999999864555543 35778888877 65543
No 400
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=41.54 E-value=1.8e+02 Score=25.34 Aligned_cols=120 Identities=18% Similarity=0.167 Sum_probs=59.9
Q ss_pred HHHHHHHHH-HHcCCeEEEEeCC-CCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchH
Q 024022 80 TGIGLAFIA-ASRGYKLIIIMPS-TYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPE 157 (274)
Q Consensus 80 ~g~alA~~a-~~~g~~~~i~~p~-~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 157 (274)
-|.++-+++ +.+|-+...-++. +.-..-.+.+..-|-+|.+.++.. +-..+.+..+.++.++..++...+-.....
T Consensus 71 DG~gvV~~ar~~~g~~~~~rv~G~Dl~~~Ll~~a~~~~~~vfllGgkp--~V~~~a~~~l~~~~p~l~ivg~h~GYf~~~ 148 (253)
T COG1922 71 DGIGVVRAARRLLGQPLPERVAGTDLVEALLKRAAEEGKRVFLLGGKP--GVAEQAAAKLRAKYPGLKIVGSHDGYFDPE 148 (253)
T ss_pred CchhHHHHHHHHhCccCcccCChHHHHHHHHHHhCccCceEEEecCCH--HHHHHHHHHHHHHCCCceEEEecCCCCChh
Confidence 456777777 5667775433332 111122223333456788887542 234445566666666544443332222221
Q ss_pred hhhhchHHHHHHhhC-CCCCEEEEecCCcccHHHHHHHHHhhCCCcEEEEE
Q 024022 158 IHYETTGPEIWNDSG-GKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGI 207 (274)
Q Consensus 158 ~g~~t~~~Ei~~q~~-~~~d~iv~~vG~Gg~~~Gi~~~~k~~~~~~~vigv 207 (274)
.- . .|++.+. .+||.++|+.|.-.==-=|.... ...+..=.+||
T Consensus 149 e~-~----~i~~~I~~s~pdil~VgmG~P~QE~wi~~~~-~~~~~~v~igV 193 (253)
T COG1922 149 EE-E----AIVERIAASGPDILLVGMGVPRQEIWIARNR-QQLPVAVAIGV 193 (253)
T ss_pred hH-H----HHHHHHHhcCCCEEEEeCCCchhHHHHHHhH-HhcCCceEEec
Confidence 11 1 3445542 35999999998765433333332 23344445555
No 401
>PLN02342 ornithine carbamoyltransferase
Probab=41.40 E-value=1.5e+02 Score=27.12 Aligned_cols=46 Identities=17% Similarity=0.261 Sum_probs=33.1
Q ss_pred CChHHHHHHHHHHHcCCeEEEEeCCCC--CHHHHHHHHHCCC-EEEEeC
Q 024022 77 SGNTGIGLAFIAASRGYKLIIIMPSTY--SIERRIILRALGA-EVYLAD 122 (274)
Q Consensus 77 sGN~g~alA~~a~~~g~~~~i~~p~~~--~~~~~~~~~~~Ga-~v~~~~ 122 (274)
..|.+.+++.+++++|++++++.|+.- ++..++.++..|. ++....
T Consensus 203 ~~nva~Sli~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~~ 251 (348)
T PLN02342 203 GNNIVHSWLLLAAVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEITN 251 (348)
T ss_pred CchhHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEEc
Confidence 357889999999999999999999853 3444555566674 665543
No 402
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=41.37 E-value=1.4e+02 Score=27.43 Aligned_cols=95 Identities=18% Similarity=0.190 Sum_probs=41.2
Q ss_pred CeEEEEeCCCCCHHHHHHHHHCCC-EEEEeCCCCChh-HHHHHHHHHHHhCCCeEe-eCCC-CCCcchHhhhhchHHHHH
Q 024022 93 YKLIIIMPSTYSIERRIILRALGA-EVYLADPAVGFE-GFVKKGEEILNRTPNGYI-LGQF-ENPANPEIHYETTGPEIW 168 (274)
Q Consensus 93 ~~~~i~~p~~~~~~~~~~~~~~Ga-~v~~~~~~~~~~-~~~~~a~~~~~~~~~~~~-~~~~-~~~~~~~~g~~t~~~Ei~ 168 (274)
.|..|+.-.+.-..--..++.+|. ++..+.+....+ ...+...+..++.+-.+. .+.. .||..- ...++.
T Consensus 5 ~p~~i~~G~g~l~~l~~~l~~~g~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~~------~v~~~~ 78 (377)
T cd08176 5 LPPTNLFGAGAIKEIGDELKNLGFKKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTIT------NVKDGL 78 (377)
T ss_pred CCCeEEECcCHHHHHHHHHHHhCCCeEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCHH------HHHHHH
Confidence 455555555433333445666774 555554322122 234444444444321222 2111 133321 122333
Q ss_pred HhhC-CCCCEEEEecCCcccHHHHHHHH
Q 024022 169 NDSG-GKVDAFIAGIGTGGTVTGAGRFL 195 (274)
Q Consensus 169 ~q~~-~~~d~iv~~vG~Gg~~~Gi~~~~ 195 (274)
+++. .++| +|+++|+|..+ =+++++
T Consensus 79 ~~~~~~~~D-~IIavGGGS~i-D~aK~i 104 (377)
T cd08176 79 AVFKKEGCD-FIISIGGGSPH-DCAKAI 104 (377)
T ss_pred HHHHhcCCC-EEEEeCCcHHH-HHHHHH
Confidence 3332 2467 56788876653 344443
No 403
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=41.33 E-value=2.8e+02 Score=25.27 Aligned_cols=114 Identities=21% Similarity=0.233 Sum_probs=71.2
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCC
Q 024022 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTP 142 (274)
Q Consensus 63 g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~ 142 (274)
.+.+||.+ ++...-|--|.|++.-|+..|-.=+|=++- ++.|.+.-+.+|+.
T Consensus 188 Akv~~Gst-vAVfGLG~VGLav~~Gaka~GAsrIIgvDi--N~~Kf~~ak~fGaT------------------------- 239 (375)
T KOG0022|consen 188 AKVEPGST-VAVFGLGGVGLAVAMGAKAAGASRIIGVDI--NPDKFEKAKEFGAT------------------------- 239 (375)
T ss_pred cccCCCCE-EEEEecchHHHHHHHhHHhcCcccEEEEec--CHHHHHHHHhcCcc-------------------------
Confidence 34556655 777777778888887777777655544442 44555555555552
Q ss_pred CeEeeCCCCCCcchHhhhhchHHHHHHhhCCCCCEEEEecCCcccHHHHHHHHHhhCCCcEEEEEecCCCc
Q 024022 143 NGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESA 213 (274)
Q Consensus 143 ~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~iv~~vG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~ 213 (274)
-++ ||... ...+-.-|.|..++.+||-|=++|+=.++.-....-+..+-..-++||.+.+..
T Consensus 240 --e~i----Np~d~---~~~i~evi~EmTdgGvDysfEc~G~~~~m~~al~s~h~GwG~sv~iGv~~~~~~ 301 (375)
T KOG0022|consen 240 --EFI----NPKDL---KKPIQEVIIEMTDGGVDYSFECIGNVSTMRAALESCHKGWGKSVVIGVAAAGQE 301 (375)
T ss_pred --eec----Chhhc---cccHHHHHHHHhcCCceEEEEecCCHHHHHHHHHHhhcCCCeEEEEEecCCCcc
Confidence 122 22211 112333344445567899999998877777666666666777889999988764
No 404
>PRK05650 short chain dehydrogenase; Provisional
Probab=41.30 E-value=2.2e+02 Score=24.12 Aligned_cols=53 Identities=21% Similarity=0.268 Sum_probs=36.3
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHCCCEEEEeCC
Q 024022 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLADP 123 (274)
Q Consensus 71 ~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~~ 123 (274)
.+|+..+|..|.++|......|.+++++...... +.....++..|.++..+..
T Consensus 3 vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~ 56 (270)
T PRK05650 3 VMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGGDGFYQRC 56 (270)
T ss_pred EEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEc
Confidence 4788888889999999988889987776554221 1223345666777766554
No 405
>PRK07062 short chain dehydrogenase; Provisional
Probab=41.30 E-value=2.2e+02 Score=24.01 Aligned_cols=33 Identities=12% Similarity=0.142 Sum_probs=26.9
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPS 101 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~ 101 (274)
.+.+|+..+|.-|.++|......|.+++++...
T Consensus 9 k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~ 41 (265)
T PRK07062 9 RVAVVTGGSSGIGLATVELLLEAGASVAICGRD 41 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 456888888889999999988899987766554
No 406
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=41.27 E-value=2.4e+02 Score=25.89 Aligned_cols=20 Identities=25% Similarity=0.526 Sum_probs=12.0
Q ss_pred CCCEEEEecCCcccHHHHHHHH
Q 024022 174 KVDAFIAGIGTGGTVTGAGRFL 195 (274)
Q Consensus 174 ~~d~iv~~vG~Gg~~~Gi~~~~ 195 (274)
++| +|+++|+|..+ =+++++
T Consensus 79 ~~D-~IIaiGGGS~i-D~aK~i 98 (386)
T cd08191 79 GPD-VIIGLGGGSCI-DLAKIA 98 (386)
T ss_pred CCC-EEEEeCCchHH-HHHHHH
Confidence 567 46888876654 344443
No 407
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=41.16 E-value=1.2e+02 Score=27.97 Aligned_cols=51 Identities=22% Similarity=0.161 Sum_probs=34.2
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCC--eEEEEeCCCCCHHHHHHHHHC
Q 024022 62 KGLITPGKTVLIELTSGNTGIGLAFIAASRGY--KLIIIMPSTYSIERRIILRAL 114 (274)
Q Consensus 62 ~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~--~~~i~~p~~~~~~~~~~~~~~ 114 (274)
...+++|++.+|...+|-.|..++..|+.+|. ..++.+. .++.|++.++.+
T Consensus 170 ~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~--~~~~r~~~a~~~ 222 (410)
T cd08238 170 RMGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTD--VNDERLARAQRL 222 (410)
T ss_pred hcCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEc--CCHHHHHHHHHh
Confidence 34567777755555678899998888999875 2233333 355677777776
No 408
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=41.12 E-value=2.1e+02 Score=23.79 Aligned_cols=49 Identities=16% Similarity=0.190 Sum_probs=33.0
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeC
Q 024022 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLAD 122 (274)
Q Consensus 71 ~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~ 122 (274)
.++....|..|..-+......|-.++|+-|+-.+. +..+...| +|..+.
T Consensus 11 ~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~--l~~l~~~~-~i~~~~ 59 (205)
T TIGR01470 11 AVLVVGGGDVALRKARLLLKAGAQLRVIAEELESE--LTLLAEQG-GITWLA 59 (205)
T ss_pred eEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHH--HHHHHHcC-CEEEEe
Confidence 37888889999888888888899888888764422 33333333 444443
No 409
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=40.68 E-value=1.9e+02 Score=25.45 Aligned_cols=52 Identities=21% Similarity=0.147 Sum_probs=33.5
Q ss_pred EEEeCCChHHHHHHHHHHHc-------------CCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCC
Q 024022 72 LIELTSGNTGIGLAFIAASR-------------GYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (274)
Q Consensus 72 vv~~ssGN~g~alA~~a~~~-------------g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 123 (274)
++..++|..+..+|..+.+. +-+.+|+++..........++.+|++++.++.
T Consensus 60 ~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~h~~~~~~~~~~g~~~~~v~~ 124 (345)
T cd06450 60 GVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHVSVEKAAAYLDVKVRLVPV 124 (345)
T ss_pred EEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcCcchhHHHHHHHHHhcCeEEeee
Confidence 56667777777666665431 12457777775555555666677999888864
No 410
>PRK07775 short chain dehydrogenase; Provisional
Probab=40.64 E-value=2.3e+02 Score=24.15 Aligned_cols=54 Identities=20% Similarity=0.131 Sum_probs=35.9
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCH-HHHHHHHHCCCEEEEeCC
Q 024022 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSI-ERRIILRALGAEVYLADP 123 (274)
Q Consensus 70 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~-~~~~~~~~~Ga~v~~~~~ 123 (274)
+.+|+..+|..|.+++......|.+++++....... .-...++..|.++..+..
T Consensus 12 ~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 66 (274)
T PRK07775 12 PALVAGASSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRADGGEAVAFPL 66 (274)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEC
Confidence 557888889999999998888899876665432111 112335566888766554
No 411
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=40.52 E-value=2.7e+02 Score=24.85 Aligned_cols=79 Identities=11% Similarity=-0.063 Sum_probs=41.1
Q ss_pred CCCCchhhHHHHHHHHHHHHcCC-CCCCCeEEEEeCCChHHHHHHHHHHHcCCe---EEEEeCCCCCHHHHHHHHHCCCE
Q 024022 42 QPCSSVKDRIAYSMIKDAEDKGL-ITPGKTVLIELTSGNTGIGLAFIAASRGYK---LIIIMPSTYSIERRIILRALGAE 117 (274)
Q Consensus 42 nptGS~K~R~a~~~~~~a~~~g~-~~~g~~~vv~~ssGN~g~alA~~a~~~g~~---~~i~~p~~~~~~~~~~~~~~Ga~ 117 (274)
.|.|.-..|.+..-... ...|. ..++.. |+.++.+..+.-++..+- .+-. -.|++|.-.-..-...++.+|++
T Consensus 34 ~~~G~~~lr~aia~~~~-~~~g~~~~~~~~-Iiit~Gs~~ai~~~~~~~-~~~g~~~d~Vl~~~p~y~~~~~~~~~~g~~ 110 (350)
T TIGR03537 34 SALGTKALREAISGWFE-RRFGVKLDPDAQ-VLPSAGSKEAIFHFPLVF-IDPEEDRRRVIFGTPGYPVYERGALFAGGE 110 (350)
T ss_pred CCCCCHHHHHHHHHHHH-HHhCCCCCCCCc-EEEcCChHHHHHHHHHHH-cCCCCCCceEEEcCCCCcchHHHHHhcCCE
Confidence 34566676654433221 12232 223212 666655555554443322 2221 25666654444556667889999
Q ss_pred EEEeCC
Q 024022 118 VYLADP 123 (274)
Q Consensus 118 v~~~~~ 123 (274)
++.++-
T Consensus 111 ~~~v~~ 116 (350)
T TIGR03537 111 PTAVKL 116 (350)
T ss_pred EEEccc
Confidence 998864
No 412
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=40.39 E-value=1.9e+02 Score=25.56 Aligned_cols=32 Identities=19% Similarity=0.289 Sum_probs=24.0
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCC
Q 024022 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPST 102 (274)
Q Consensus 71 ~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~ 102 (274)
+++.-.+|-.++|++++....|++-+.++..+
T Consensus 126 ~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt 157 (288)
T PRK12749 126 TMVLLGAGGASTAIGAQGAIEGLKEIKLFNRR 157 (288)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 36666677789999998888898766666554
No 413
>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A.
Probab=39.94 E-value=1.1e+02 Score=28.23 Aligned_cols=86 Identities=14% Similarity=0.195 Sum_probs=50.1
Q ss_pred HHHHHHCC-CEEEEeCCCCCh-hHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhchHHHHHHhhCCCCCEEEEecCCc
Q 024022 108 RIILRALG-AEVYLADPAVGF-EGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTG 185 (274)
Q Consensus 108 ~~~~~~~G-a~v~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~iv~~vG~G 185 (274)
.-.++.+| .++.+++.+.-| ....+.++++.++.++...-..| -|... .-+..+..+|.+. +||.|+..+ .|
T Consensus 126 ~~~~~~~G~~r~~lvGSdYv~pre~Nri~r~~l~~~GgevvgE~Y-~plg~-td~~~ii~~I~~~---~Pd~V~stl-vG 199 (363)
T PF13433_consen 126 DYLLENFGAKRFYLVGSDYVYPRESNRIIRDLLEARGGEVVGERY-LPLGA-TDFDPIIAEIKAA---KPDFVFSTL-VG 199 (363)
T ss_dssp HHHHHHS--SEEEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEEE-E-S-H-HHHHHHHHHHHHH---T-SEEEEE---T
T ss_pred HHHHhccCCceEEEecCCccchHHHHHHHHHHHHHcCCEEEEEEE-ecCCc-hhHHHHHHHHHhh---CCCEEEEeC-cC
Confidence 34578899 999999865323 25677788888887543322111 12222 2345555566554 589666665 55
Q ss_pred ccHHHHHHHHHhhC
Q 024022 186 GTVTGAGRFLKEKN 199 (274)
Q Consensus 186 g~~~Gi~~~~k~~~ 199 (274)
.....+++.+++.+
T Consensus 200 ~s~~aF~r~~~~aG 213 (363)
T PF13433_consen 200 DSNVAFYRAYAAAG 213 (363)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHcC
Confidence 67778888888775
No 414
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=39.83 E-value=2e+02 Score=24.18 Aligned_cols=32 Identities=16% Similarity=0.184 Sum_probs=24.5
Q ss_pred CeEEEEeCC--ChHHHHHHHHHHHcCCeEEEEeC
Q 024022 69 KTVLIELTS--GNTGIGLAFIAASRGYKLIIIMP 100 (274)
Q Consensus 69 ~~~vv~~ss--GN~g~alA~~a~~~g~~~~i~~p 100 (274)
++.+|+..+ +.-|.++|....+.|.++++.-.
T Consensus 8 k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r 41 (252)
T PRK06079 8 KKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQ 41 (252)
T ss_pred CEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecC
Confidence 455777765 57999999998889999776644
No 415
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=39.71 E-value=1.5e+02 Score=27.74 Aligned_cols=53 Identities=25% Similarity=0.235 Sum_probs=39.0
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHcCC-eEEEEeCCC-----CCHHHHHHHHHCCCEEEEe
Q 024022 68 GKTVLIELTSGNTGIGLAFIAASRGY-KLIIIMPST-----YSIERRIILRALGAEVYLA 121 (274)
Q Consensus 68 g~~~vv~~ssGN~g~alA~~a~~~g~-~~~i~~p~~-----~~~~~~~~~~~~Ga~v~~~ 121 (274)
+.+ ++...+||.|.-+|..+.++|. +++++.... ......+.++..|.+++.-
T Consensus 273 g~~-VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~~~~~~~~~~~~GV~i~~~ 331 (457)
T PRK11749 273 GKR-VVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPASEEEVEHAKEEGVEFEWL 331 (457)
T ss_pred CCe-EEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHCCCEEEec
Confidence 344 7888899999999999999998 777776532 1334456677788887753
No 416
>PRK08339 short chain dehydrogenase; Provisional
Probab=39.66 E-value=2.2e+02 Score=24.20 Aligned_cols=32 Identities=25% Similarity=0.389 Sum_probs=26.2
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeC
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMP 100 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p 100 (274)
++.+|+..+|.-|.++|....+.|.+++++-.
T Consensus 9 k~~lItGas~gIG~aia~~l~~~G~~V~~~~r 40 (263)
T PRK08339 9 KLAFTTASSKGIGFGVARVLARAGADVILLSR 40 (263)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeC
Confidence 45688888888999999998899998776644
No 417
>PRK12747 short chain dehydrogenase; Provisional
Probab=39.63 E-value=2e+02 Score=23.98 Aligned_cols=54 Identities=19% Similarity=0.144 Sum_probs=35.6
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC--HHHHHHHHHCCCEEEEeC
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS--IERRIILRALGAEVYLAD 122 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~--~~~~~~~~~~Ga~v~~~~ 122 (274)
.+.+|+..+|--|.++|....+.|.++++....... ......++..|.++..+.
T Consensus 5 k~~lItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (252)
T PRK12747 5 KVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFSIG 60 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHHhcCCceEEEe
Confidence 456888888889999999988899887765432211 122334555676665544
No 418
>PRK07063 short chain dehydrogenase; Provisional
Probab=39.62 E-value=2.3e+02 Score=23.79 Aligned_cols=55 Identities=16% Similarity=0.119 Sum_probs=34.4
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHH--CCCEEEEeCC
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRA--LGAEVYLADP 123 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~-~~~~~~~~~--~Ga~v~~~~~ 123 (274)
++.+|+..+|--|.++|..-...|.+++++-..... ....+.++. .+.++..+..
T Consensus 8 k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (260)
T PRK07063 8 KVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPA 65 (260)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEc
Confidence 455888888889999999888889987665443211 111233433 4666655543
No 419
>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative. This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.
Probab=39.54 E-value=2.2e+02 Score=23.49 Aligned_cols=53 Identities=21% Similarity=0.179 Sum_probs=36.1
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC--HHHHHHHHHCCCEEEEeCCC
Q 024022 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS--IERRIILRALGAEVYLADPA 124 (274)
Q Consensus 72 vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~--~~~~~~~~~~Ga~v~~~~~~ 124 (274)
+|+..+|.-|.++|....+.|.+++++.....+ ....+.++..+.++..+..+
T Consensus 2 lItGas~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D 56 (239)
T TIGR01831 2 LVTGASRGIGRAIANRLAADGFEICVHYHSGRSDAESVVSAIQAQGGNARLLQFD 56 (239)
T ss_pred EEeCCCchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEcc
Confidence 677778889999999988899997766543222 12234555678777666543
No 420
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=39.52 E-value=1.8e+02 Score=26.43 Aligned_cols=54 Identities=13% Similarity=0.190 Sum_probs=39.0
Q ss_pred CCeEEEEeCC---ChHHHHHHHH-HHHcCCeEEEEeCCCC--CHHHHHHHHHCCCEEEEeC
Q 024022 68 GKTVLIELTS---GNTGIGLAFI-AASRGYKLIIIMPSTY--SIERRIILRALGAEVYLAD 122 (274)
Q Consensus 68 g~~~vv~~ss---GN~g~alA~~-a~~~g~~~~i~~p~~~--~~~~~~~~~~~Ga~v~~~~ 122 (274)
|.+ |+-... +|.+.+++.. ++.+|++++++.|+.. +..-++.++..|+++..+.
T Consensus 159 g~k-ia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~ 218 (338)
T PRK08192 159 GMH-IAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKITITD 218 (338)
T ss_pred CCE-EEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEEEEc
Confidence 444 554444 6889999976 6677999999999853 5555666777888887765
No 421
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=39.50 E-value=1.6e+02 Score=27.10 Aligned_cols=26 Identities=23% Similarity=0.472 Sum_probs=14.8
Q ss_pred HHHHHhhCCCCCEEEEecCCcccHHHHHHH
Q 024022 165 PEIWNDSGGKVDAFIAGIGTGGTVTGAGRF 194 (274)
Q Consensus 165 ~Ei~~q~~~~~d~iv~~vG~Gg~~~Gi~~~ 194 (274)
.+++++. ++| +|+++|+|..+ =++++
T Consensus 80 ~~~~~~~--~~D-~IIaiGGGS~i-D~aK~ 105 (382)
T PRK10624 80 VEVFKAS--GAD-YLIAIGGGSPQ-DTCKA 105 (382)
T ss_pred HHHHHhc--CCC-EEEEeCChHHH-HHHHH
Confidence 3444443 467 67888877654 44443
No 422
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=39.21 E-value=42 Score=32.03 Aligned_cols=42 Identities=24% Similarity=0.336 Sum_probs=31.6
Q ss_pred CCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCC
Q 024022 76 TSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (274)
Q Consensus 76 ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 123 (274)
|||-+|.++|.++...|-+++++.-...- . .-.|.+++.+..
T Consensus 280 SSGkmG~alA~aa~~~GA~VtlI~Gp~~~----~--~p~~v~~i~V~t 321 (475)
T PRK13982 280 SSGKQGFAIAAAAAAAGAEVTLISGPVDL----A--DPQGVKVIHVES 321 (475)
T ss_pred CchHHHHHHHHHHHHCCCcEEEEeCCcCC----C--CCCCceEEEecC
Confidence 89999999999999999999999844211 0 125667777763
No 423
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=39.04 E-value=1.5e+02 Score=21.62 Aligned_cols=92 Identities=22% Similarity=0.140 Sum_probs=48.1
Q ss_pred HHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCC--CCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhh
Q 024022 82 IGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP--AVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIH 159 (274)
Q Consensus 82 ~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g 159 (274)
..+|.+.++.|.++.++=.......-.+.++.+..+++.+.. ...+....+.++...+..++...+ ..|
T Consensus 18 ~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv---------~GG 88 (121)
T PF02310_consen 18 LYLAAYLRKAGHEVDILDANVPPEELVEALRAERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIV---------VGG 88 (121)
T ss_dssp HHHHHHHHHTTBEEEEEESSB-HHHHHHHHHHTTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEE---------EEE
T ss_pred HHHHHHHHHCCCeEEEECCCCCHHHHHHHHhcCCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEE---------EEC
Confidence 455666777899888663333234556678888888887764 222334444444433222222221 122
Q ss_pred -hhchHHHH-HHhhCCCCCEEEEecC
Q 024022 160 -YETTGPEI-WNDSGGKVDAFIAGIG 183 (274)
Q Consensus 160 -~~t~~~Ei-~~q~~~~~d~iv~~vG 183 (274)
+.+..+|. ++.. ...|+++..=|
T Consensus 89 ~~~t~~~~~~l~~~-~~~D~vv~Geg 113 (121)
T PF02310_consen 89 PHATADPEEILREY-PGIDYVVRGEG 113 (121)
T ss_dssp SSSGHHHHHHHHHH-HTSEEEEEETT
T ss_pred CchhcChHHHhccC-cCcceecCCCh
Confidence 23444443 4331 24688877654
No 424
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=39.02 E-value=2e+02 Score=22.98 Aligned_cols=31 Identities=35% Similarity=0.504 Sum_probs=19.4
Q ss_pred CeEEEEeCCChHH---HHHHHHHHHcCCeEEEEe
Q 024022 69 KTVLIELTSGNTG---IGLAFIAASRGYKLIIIM 99 (274)
Q Consensus 69 ~~~vv~~ssGN~g---~alA~~a~~~g~~~~i~~ 99 (274)
.+.+|-+..||.| .++|...+..|+++++++
T Consensus 26 ~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~ 59 (169)
T PF03853_consen 26 PRVLILCGPGNNGGDGLVAARHLANRGYNVTVYL 59 (169)
T ss_dssp -EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CeEEEEECCCCChHHHHHHHHHHHHCCCeEEEEE
Confidence 4557777888876 444444556789988844
No 425
>PRK13984 putative oxidoreductase; Provisional
Probab=38.90 E-value=1.3e+02 Score=29.33 Aligned_cols=50 Identities=22% Similarity=0.378 Sum_probs=37.5
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC--------------C----HHHHHHHHHCCCEEEE
Q 024022 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTY--------------S----IERRIILRALGAEVYL 120 (274)
Q Consensus 71 ~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~--------------~----~~~~~~~~~~Ga~v~~ 120 (274)
.|+.-.+|..|.+.|...++.|++++|+=.... + ....+.++.+|.+++.
T Consensus 285 ~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~ 352 (604)
T PRK13984 285 KVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHL 352 (604)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEEC
Confidence 367777999999999999999999998844321 1 2235678889988764
No 426
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=38.88 E-value=1.5e+02 Score=26.71 Aligned_cols=33 Identities=21% Similarity=0.326 Sum_probs=17.8
Q ss_pred CCCEEEEecCCcccHHHHHHHHHhhCCCcEEEEEec
Q 024022 174 KVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEP 209 (274)
Q Consensus 174 ~~d~iv~~vG~Gg~~~Gi~~~~k~~~~~~~vigve~ 209 (274)
++| +|+++|+|+.+ =+++++.... ..++|.|-.
T Consensus 77 ~~D-~IIavGGGS~i-D~aK~ia~~~-~~P~iaIPT 109 (351)
T cd08170 77 GAD-VVIGIGGGKTL-DTAKAVADYL-GAPVVIVPT 109 (351)
T ss_pred CCC-EEEEecCchhh-HHHHHHHHHc-CCCEEEeCC
Confidence 456 56778766554 4455544322 345666643
No 427
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=38.80 E-value=2.3e+02 Score=26.02 Aligned_cols=51 Identities=16% Similarity=0.107 Sum_probs=29.7
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCC
Q 024022 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (274)
Q Consensus 72 vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 123 (274)
|+..+++..+..++..+- .+-.-.|+++.-+-..-...++.+|++++.++-
T Consensus 107 i~it~G~~~al~~~~~~~-~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~ 157 (412)
T PTZ00433 107 VVLCSGVSHAILMALTAL-CDEGDNILVPAPGFPHYETVCKAYGIEMRFYNC 157 (412)
T ss_pred EEEeCChHHHHHHHHHHh-cCCCCEEEEccCCcccHHHHHHHcCCEEEEEec
Confidence 666666666666555433 222224455543333345667889999988864
No 428
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=38.74 E-value=2.6e+02 Score=24.21 Aligned_cols=45 Identities=20% Similarity=0.152 Sum_probs=31.5
Q ss_pred hHHHHHHhhCCCCCEEEEecCCcccHHHHHHHHHhhC----CCcEEEEEecC
Q 024022 163 TGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKN----PNIKVYGIEPS 210 (274)
Q Consensus 163 ~~~Ei~~q~~~~~d~iv~~vG~Gg~~~Gi~~~~k~~~----~~~~vigve~~ 210 (274)
...+++++- +++|.||+. +...+.|+..++++.+ .++.|+|.+-.
T Consensus 192 ~~~~~l~~~-~~~~ai~~~--~d~~A~g~~~al~~~g~~vp~di~vig~D~~ 240 (305)
T cd06324 192 QAENLLKRY-PDVRLIWAA--NDQMAFGALRAAKEAGRKPGRDVLFGGVNWS 240 (305)
T ss_pred HHHHHHHHC-CCccEEEEC--CchHHHHHHHHHHHcCCCcCCCEEEEecCCC
Confidence 445555553 468988864 5566779999999876 35788888744
No 429
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=38.74 E-value=2.5e+02 Score=24.04 Aligned_cols=32 Identities=25% Similarity=0.221 Sum_probs=24.2
Q ss_pred CeEEEEeCCC--hHHHHHHHHHHHcCCeEEEEeC
Q 024022 69 KTVLIELTSG--NTGIGLAFIAASRGYKLIIIMP 100 (274)
Q Consensus 69 ~~~vv~~ssG--N~g~alA~~a~~~g~~~~i~~p 100 (274)
+..||+..++ .-|.++|....+.|.+++++-.
T Consensus 8 k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r 41 (271)
T PRK06505 8 KRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQ 41 (271)
T ss_pred CEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecC
Confidence 4557777664 6889999888889998877643
No 430
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=38.73 E-value=49 Score=22.12 Aligned_cols=28 Identities=21% Similarity=0.482 Sum_probs=22.4
Q ss_pred CCChHHHHHHHHHHHcCCeEEEEeCCCC
Q 024022 76 TSGNTGIGLAFIAASRGYKLIIIMPSTY 103 (274)
Q Consensus 76 ssGN~g~alA~~a~~~g~~~~i~~p~~~ 103 (274)
.+|-.|.+.|+..++.|.+++|+=....
T Consensus 3 GaG~sGl~aA~~L~~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 3 GAGISGLAAAYYLAKAGYRVTVFEKNDR 30 (68)
T ss_dssp S-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred eeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence 3677899999999999999988876643
No 431
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=38.66 E-value=2e+02 Score=26.12 Aligned_cols=51 Identities=22% Similarity=0.276 Sum_probs=34.8
Q ss_pred EEEeCCC--hHHHHHHHHHHHcCCeEEEEeCCCC--CHHHHHH----HHHCCCEEEEeC
Q 024022 72 LIELTSG--NTGIGLAFIAASRGYKLIIIMPSTY--SIERRII----LRALGAEVYLAD 122 (274)
Q Consensus 72 vv~~ssG--N~g~alA~~a~~~g~~~~i~~p~~~--~~~~~~~----~~~~Ga~v~~~~ 122 (274)
|+-...+ |.+.+++..++++|++++++.|+.. ++..++. .+..|.++...+
T Consensus 158 va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 216 (331)
T PRK02102 158 LAYVGDGRNNMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITITE 216 (331)
T ss_pred EEEECCCcccHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEc
Confidence 4444443 7899999999999999999999753 2223322 344788877664
No 432
>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=38.64 E-value=2.5e+02 Score=24.02 Aligned_cols=56 Identities=29% Similarity=0.436 Sum_probs=40.0
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 024022 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (274)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 120 (274)
+.+.+.+|.+.+|...+|..|.+++..++.+|.++++..+ + .+.+.++.+|++-+.
T Consensus 138 ~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~---~-~~~~~~~~~g~~~~~ 193 (326)
T cd08272 138 DRAAVQAGQTVLIHGGAGGVGHVAVQLAKAAGARVYATAS---S-EKAAFARSLGADPII 193 (326)
T ss_pred HhcCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEec---h-HHHHHHHHcCCCEEE
Confidence 4566677777566556788999999999999998665543 2 556666778875443
No 433
>PRK12414 putative aminotransferase; Provisional
Probab=38.58 E-value=3e+02 Score=24.92 Aligned_cols=51 Identities=18% Similarity=-0.005 Sum_probs=28.7
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCC
Q 024022 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (274)
Q Consensus 72 vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 123 (274)
++..++|..+..++..+- +.-.-.|+++.-.-..-...++.+|++++.++-
T Consensus 93 i~it~g~~~al~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~ 143 (384)
T PRK12414 93 VTVIASASEGLYAAISAL-VHPGDEVIYFEPSFDSYAPIVRLQGATPVAIKL 143 (384)
T ss_pred EEEECChHHHHHHHHHHh-cCCCCEEEEeCCCccchHHHHHHcCCEEEEEec
Confidence 666677777766555432 222223444442223344556778999988874
No 434
>PRK06425 histidinol-phosphate aminotransferase; Validated
Probab=38.56 E-value=2.8e+02 Score=24.54 Aligned_cols=49 Identities=10% Similarity=-0.208 Sum_probs=30.9
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCC
Q 024022 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (274)
Q Consensus 72 vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 123 (274)
|+..+++..+..++... ++- ..++++.-+-..-....+.+|++++.++-
T Consensus 60 I~it~Gs~~~l~~~~~~--~~~-~~vv~~~P~y~~y~~~~~~~G~~v~~vp~ 108 (332)
T PRK06425 60 VLIGPGLTHFIYRLLSY--INV-GNIIIVEPNFNEYKGYAFTHGIRISALPF 108 (332)
T ss_pred EEECCCHHHHHHHHHHH--hCC-CcEEEeCCChHHHHHHHHHcCCeEEEEeC
Confidence 66666666776666542 332 23444443444556778889999999874
No 435
>PLN02583 cinnamoyl-CoA reductase
Probab=38.53 E-value=2.5e+02 Score=24.37 Aligned_cols=33 Identities=30% Similarity=0.327 Sum_probs=28.4
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPS 101 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~ 101 (274)
.+.+|+..+|-.|..++......|.+++++...
T Consensus 7 k~vlVTGatG~IG~~lv~~Ll~~G~~V~~~~R~ 39 (297)
T PLN02583 7 KSVCVMDASGYVGFWLVKRLLSRGYTVHAAVQK 39 (297)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEEcC
Confidence 456888899999999999999999999888764
No 436
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=38.51 E-value=2.3e+02 Score=23.49 Aligned_cols=52 Identities=19% Similarity=0.231 Sum_probs=34.1
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHH-HHHHCCCEEEEeC
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRI-ILRALGAEVYLAD 122 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~-~~~~~Ga~v~~~~ 122 (274)
.+.+|+..+|.-|.++|......|.++++...... .+.+ ....++.++..+.
T Consensus 6 k~ilItGas~gIG~~la~~l~~~G~~vv~~~~~~~--~~~~~~~~~~~~~~~~~~ 58 (253)
T PRK08642 6 QTVLVTGGSRGLGAAIARAFAREGARVVVNYHQSE--DAAEALADELGDRAIALQ 58 (253)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcCCCH--HHHHHHHHHhCCceEEEE
Confidence 45688889999999999998888998876554422 2222 2233455555443
No 437
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=38.50 E-value=2.5e+02 Score=24.80 Aligned_cols=55 Identities=27% Similarity=0.385 Sum_probs=40.3
Q ss_pred HHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCE
Q 024022 60 EDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAE 117 (274)
Q Consensus 60 ~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~ 117 (274)
.+....+||.+.+|-+..|--|..+...|+..|.-++.... ..+|.+..+.+|++
T Consensus 139 ~e~y~vkpGhtVlvhaAAGGVGlll~Ql~ra~~a~tI~~as---TaeK~~~akenG~~ 193 (336)
T KOG1197|consen 139 FEAYNVKPGHTVLVHAAAGGVGLLLCQLLRAVGAHTIATAS---TAEKHEIAKENGAE 193 (336)
T ss_pred HHhcCCCCCCEEEEEeccccHHHHHHHHHHhcCcEEEEEec---cHHHHHHHHhcCCc
Confidence 35677889998788888888888888878877766554443 34677777777776
No 438
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=38.33 E-value=3e+02 Score=24.81 Aligned_cols=51 Identities=22% Similarity=0.148 Sum_probs=29.0
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCC
Q 024022 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (274)
Q Consensus 72 vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 123 (274)
|+..+++..+..++..+- ..-.-.|+++.-+-..-....+.+|++++.++-
T Consensus 94 vi~t~G~~~~l~~~~~~~-~~~gd~vlv~~P~y~~~~~~~~~~G~~v~~v~~ 144 (383)
T TIGR03540 94 VLSLIGSKEGIAHIPLAF-VNPGDIVLVPDPGYPVYRIGTLFAGGEPYEMPL 144 (383)
T ss_pred EEECCCcHHHHHHHHHHh-CCCCCEEEEeCCCCcchHHHHHhcCCEEEEEec
Confidence 555555566665554432 222234555543333334567789999998864
No 439
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=38.27 E-value=2.2e+02 Score=23.10 Aligned_cols=32 Identities=25% Similarity=0.416 Sum_probs=22.3
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHcCCeEEEEe
Q 024022 68 GKTVLIELTSGNTGIGLAFIAASRGYKLIIIM 99 (274)
Q Consensus 68 g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~ 99 (274)
+.+.+|...+|..|++++....+.|.+++++-
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~ 59 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLAREGARVVLVG 59 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEc
Confidence 34545555678899888888777776655553
No 440
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=38.06 E-value=1.4e+02 Score=26.99 Aligned_cols=55 Identities=27% Similarity=0.388 Sum_probs=34.5
Q ss_pred EEEEeCCChHHHHHHHHHHH----cCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhC
Q 024022 71 VLIELTSGNTGIGLAFIAAS----RGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRT 141 (274)
Q Consensus 71 ~vv~~ssGN~g~alA~~a~~----~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~ 141 (274)
.+++...=|++-|+|++|.. .|=..++|+|.+- .+.....|.++.+.+.+++++.
T Consensus 80 illEP~gRnTApAIA~aa~~~~~~~~d~~~lVlpsDH----------------~I~d~~af~~av~~A~~~A~~g 138 (333)
T COG0836 80 IILEPEGRNTAPAIALAALSATAEGGDALVLVLPSDH----------------VIADEEAFLNAVKKAEKAAEEG 138 (333)
T ss_pred eEeccCCCCcHHHHHHHHHHHHHhCCCcEEEEecCcc----------------eeccHHHHHHHHHHHHHHHHcC
Confidence 47888888888888887654 3434667777641 2222223566777777777663
No 441
>PRK05839 hypothetical protein; Provisional
Probab=38.05 E-value=3.1e+02 Score=24.82 Aligned_cols=78 Identities=13% Similarity=-0.136 Sum_probs=40.0
Q ss_pred CCCchhhHHHHHHHHHHHHcC-CCCCCCeEEEEeCCChHHHHHHHHHHHc-CCeEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 024022 43 PCSSVKDRIAYSMIKDAEDKG-LITPGKTVLIELTSGNTGIGLAFIAASR-GYKLIIIMPSTYSIERRIILRALGAEVYL 120 (274)
Q Consensus 43 ptGS~K~R~a~~~~~~a~~~g-~~~~g~~~vv~~ssGN~g~alA~~a~~~-g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 120 (274)
+.|....|-+..-... .+.| .+.+. .|+..+++..+..++..+-.+ +-.-.|++|.-.-..-...++.+|++++.
T Consensus 59 ~~G~~~lr~aia~~l~-~~~g~~~~~~--~I~it~G~~~al~~~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~v~~ 135 (374)
T PRK05839 59 SAGEESLREAQRGFFK-RRFKIELKEN--ELIPTFGTREVLFNFPQFVLFDKQNPTIAYPNPFYQIYEGAAIASRAKVLL 135 (374)
T ss_pred CCCCHHHHHHHHHHHH-HHhCCCCCcc--eEEEecCcHHHHHHHHHHHhcCCCCCEEEECCCCchhhHHHHHhcCCEEEE
Confidence 4576677755432221 1223 13343 266555555555444333222 12234556543344445567789999999
Q ss_pred eCC
Q 024022 121 ADP 123 (274)
Q Consensus 121 ~~~ 123 (274)
++-
T Consensus 136 v~~ 138 (374)
T PRK05839 136 MPL 138 (374)
T ss_pred eec
Confidence 864
No 442
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=37.98 E-value=1.3e+02 Score=28.19 Aligned_cols=97 Identities=22% Similarity=0.241 Sum_probs=56.1
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCC
Q 024022 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTP 142 (274)
Q Consensus 63 g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~ 142 (274)
+....|++ ++....|+-|+.+|..++.+|.+++++=.+ +.+.......|.++. + .++ ..+..
T Consensus 190 ~~~l~Gk~-VvViG~G~IG~~vA~~ak~~Ga~ViV~d~d---p~r~~~A~~~G~~v~--~----lee-------al~~a- 251 (406)
T TIGR00936 190 NLLIAGKT-VVVAGYGWCGKGIAMRARGMGARVIVTEVD---PIRALEAAMDGFRVM--T----MEE-------AAKIG- 251 (406)
T ss_pred CCCCCcCE-EEEECCCHHHHHHHHHHhhCcCEEEEEeCC---hhhHHHHHhcCCEeC--C----HHH-------HHhcC-
Confidence 33445555 999999999999999999999985554222 233444455677543 1 111 11222
Q ss_pred CeEeeCCCCCCcchHhhhhchHHHHHHhhCCCCCEEEEecCCccc
Q 024022 143 NGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGGT 187 (274)
Q Consensus 143 ~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~iv~~vG~Gg~ 187 (274)
+.++... . ....+..+.+.+++ +..+++-+|.+..
T Consensus 252 DVVItaT-G-------~~~vI~~~~~~~mK--~GailiN~G~~~~ 286 (406)
T TIGR00936 252 DIFITAT-G-------NKDVIRGEHFENMK--DGAIVANIGHFDV 286 (406)
T ss_pred CEEEECC-C-------CHHHHHHHHHhcCC--CCcEEEEECCCCc
Confidence 3332211 1 12234455667763 4678888887764
No 443
>PRK07060 short chain dehydrogenase; Provisional
Probab=37.97 E-value=1.9e+02 Score=23.89 Aligned_cols=52 Identities=25% Similarity=0.224 Sum_probs=35.9
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHH-HHCCCEEEEeCC
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIIL-RALGAEVYLADP 123 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~-~~~Ga~v~~~~~ 123 (274)
.+.+|+..+|..|..++......|.+++++... ..+.+.+ ...+.+++.++-
T Consensus 10 ~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~---~~~~~~~~~~~~~~~~~~D~ 62 (245)
T PRK07060 10 KSVLVTGASSGIGRACAVALAQRGARVVAAARN---AAALDRLAGETGCEPLRLDV 62 (245)
T ss_pred CEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHHhCCeEEEecC
Confidence 455788888999999999999999986665543 2333333 345677776664
No 444
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=37.82 E-value=1.4e+02 Score=26.22 Aligned_cols=58 Identities=17% Similarity=0.202 Sum_probs=39.3
Q ss_pred CCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCH----HHHHHHHHCCCEEEEeCC
Q 024022 65 ITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSI----ERRIILRALGAEVYLADP 123 (274)
Q Consensus 65 ~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~----~~~~~~~~~Ga~v~~~~~ 123 (274)
+.+|.+ |++.+.+.+...+-..|...|.++.+++.++-|. .-.+.|...|-.+..+..
T Consensus 107 I~~g~~-ILTh~~S~tv~~~l~~A~~~gk~~~V~v~EsrP~~qG~~la~eL~~~GI~vtlI~D 168 (275)
T PRK08335 107 IDDGDV-IITHSFSSAVLEILKTAKRKGKRFKVILTESAPDYEGLALANELEFLGIEFEVITD 168 (275)
T ss_pred cCCCCE-EEEECCcHHHHHHHHHHHHcCCceEEEEecCCCchhHHHHHHHHHHCCCCEEEEec
Confidence 334454 7777655555565566788898888888876552 235567778999988864
No 445
>PRK02731 histidinol-phosphate aminotransferase; Validated
Probab=37.76 E-value=2.3e+02 Score=25.39 Aligned_cols=51 Identities=18% Similarity=-0.003 Sum_probs=27.3
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCC
Q 024022 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (274)
Q Consensus 72 vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 123 (274)
|+..+++..+..+...+- .+-.-.|+++...-..-....+.+|++++.++.
T Consensus 87 i~~t~G~~~~l~~~~~~l-~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~ 137 (367)
T PRK02731 87 IILGNGSDEILELLARAY-LGPGDEVIYSEHGFAVYPIAAQAVGAKPVEVPA 137 (367)
T ss_pred EEEcCCHHHHHHHHHHHh-cCCCCEEEEecCCHHHHHHHHHHcCCeEEEecc
Confidence 555554444444433222 222234555553333444456789999998875
No 446
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=37.76 E-value=53 Score=28.81 Aligned_cols=32 Identities=22% Similarity=0.302 Sum_probs=26.5
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCC
Q 024022 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPST 102 (274)
Q Consensus 71 ~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~ 102 (274)
.|+....|-.|.++|.+.++.|++++||=...
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~ 34 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERRP 34 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhcc
Confidence 47888999999999999999999999887653
No 447
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=37.66 E-value=2.7e+02 Score=24.06 Aligned_cols=122 Identities=17% Similarity=0.166 Sum_probs=62.1
Q ss_pred CCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCC-CChh--HHHHHHHHHHHhCCCeEeeCCCC-
Q 024022 76 TSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPA-VGFE--GFVKKGEEILNRTPNGYILGQFE- 151 (274)
Q Consensus 76 ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~-~~~~--~~~~~a~~~~~~~~~~~~~~~~~- 151 (274)
||-|.|.+| ++.|-++++ +.-+.--.+++.+ +|.+=..|-.- .-.+ -.+.+|.---+..++.+.++...
T Consensus 19 ttAnig~aL----A~~GkKv~l-iD~DiGLRNLDli--mGlE~RiVYd~vdVi~g~~~l~QALIkDKr~~nL~lLPAsQt 91 (272)
T COG2894 19 TTANIGTAL----AQLGKKVVL-IDFDIGLRNLDLI--MGLENRIVYDLVDVIEGEATLNQALIKDKRLENLFLLPASQT 91 (272)
T ss_pred hhHHHHHHH----HHcCCeEEE-EecCcCchhhhhh--hcccceeeeeehhhhcCccchhhHhhccccCCceEecccccc
Confidence 334444444 456767654 4444555555554 66654333100 0001 12222322222233555543321
Q ss_pred ---CCcchHhhhhchHHHHHHhhCCCCCEEEEecCCcccHHHHHHHHHhh--CCCcEEEEEecCCCc
Q 024022 152 ---NPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEK--NPNIKVYGIEPSESA 213 (274)
Q Consensus 152 ---~~~~~~~g~~t~~~Ei~~q~~~~~d~iv~~vG~Gg~~~Gi~~~~k~~--~~~~~vigve~~~~~ 213 (274)
|...+ .+...+-.|+.+ ..+|||+|-+ -+||=.||+.. .-+--++.+.|+-|.
T Consensus 92 rdKdalt~-E~v~~vv~eL~~---~~fDyIi~Ds-----PAGIE~G~~~A~~~Ad~AiVVtnPEvSs 149 (272)
T COG2894 92 RDKDALTP-EGVKKVVNELKA---MDFDYIIIDS-----PAGIEQGFKNAVYFADEAIVVTNPEVSS 149 (272)
T ss_pred cCcccCCH-HHHHHHHHHHHh---cCCCEEEecC-----cchHHHHHHhhhhccceEEEEcCCCccc
Confidence 33345 366666555544 3699999864 66788887753 345667777887664
No 448
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=37.57 E-value=2.9e+02 Score=24.36 Aligned_cols=128 Identities=16% Similarity=0.174 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHcCCCCCCCeEEEEeCCCh--------HHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeC
Q 024022 51 IAYSMIKDAEDKGLITPGKTVLIELTSGN--------TGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLAD 122 (274)
Q Consensus 51 ~a~~~~~~a~~~g~~~~g~~~vv~~ssGN--------~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~ 122 (274)
.+...+..|++.+. ..++..+.+. .+.-+..+|++..+|+.+.++...+...+...-..|.+.+.++
T Consensus 30 ~~~avi~aAe~~~~-----Pvii~~~~~~~~~~~~~~~~~~~~~~a~~~~vpv~lHlDH~~~~e~i~~Al~~G~tsVm~d 104 (281)
T PRK06806 30 MVMGAIKAAEELNS-----PIILQIAEVRLNHSPLHLIGPLMVAAAKQAKVPVAVHFDHGMTFEKIKEALEIGFTSVMFD 104 (281)
T ss_pred HHHHHHHHHHHhCC-----CEEEEcCcchhccCChHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCEEEEc
Confidence 45566677777763 3244443322 2233445688889999999998877777777667899999998
Q ss_pred CC-CChhHHHHHHHH---HHHhCC-----CeEeeCCCCCCcchHhhhhchHHHHHHh-hC-CCCCEEEEecCC
Q 024022 123 PA-VGFEGFVKKGEE---ILNRTP-----NGYILGQFENPANPEIHYETTGPEIWND-SG-GKVDAFIAGIGT 184 (274)
Q Consensus 123 ~~-~~~~~~~~~a~~---~~~~~~-----~~~~~~~~~~~~~~~~g~~t~~~Ei~~q-~~-~~~d~iv~~vG~ 184 (274)
.+ ..+++-++.+++ ++...+ ..-.+.+.+++... .|...+-+|-.++ .. ..+|++-+++|+
T Consensus 105 ~s~~~~~eni~~t~~v~~~a~~~gv~veaE~ghlG~~d~~~~~-~g~s~t~~eea~~f~~~tg~DyLAvaiG~ 176 (281)
T PRK06806 105 GSHLPLEENIQKTKEIVELAKQYGATVEAEIGRVGGSEDGSED-IEMLLTSTTEAKRFAEETDVDALAVAIGN 176 (281)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeECCccCCccc-ccceeCCHHHHHHHHHhhCCCEEEEccCC
Confidence 65 345555555544 444442 11223333333222 2422222333333 21 258999998875
No 449
>PRK08251 short chain dehydrogenase; Provisional
Probab=37.56 E-value=2.4e+02 Score=23.39 Aligned_cols=54 Identities=30% Similarity=0.296 Sum_probs=33.6
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHH-HHHHHHHC--CCEEEEeCC
Q 024022 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIE-RRIILRAL--GAEVYLADP 123 (274)
Q Consensus 70 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~-~~~~~~~~--Ga~v~~~~~ 123 (274)
+.+|+..+|..|.++|..-.+.|.++++......... ....+... +.++..+..
T Consensus 4 ~vlItGas~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (248)
T PRK08251 4 KILITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAAL 60 (248)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEc
Confidence 4588888899999999998888987666654321111 11222222 667766654
No 450
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=37.43 E-value=2.6e+02 Score=25.49 Aligned_cols=54 Identities=26% Similarity=0.394 Sum_probs=37.5
Q ss_pred CCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 024022 64 LITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (274)
Q Consensus 64 ~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 120 (274)
.+.+|...+|...+|--|.++.-.|+..++ +.++.- .+.++++.++.+||+-+.
T Consensus 154 ~~~~g~~vLv~ggsggVG~~aiQlAk~~~~-~~v~t~--~s~e~~~l~k~lGAd~vv 207 (347)
T KOG1198|consen 154 KLSKGKSVLVLGGSGGVGTAAIQLAKHAGA-IKVVTA--CSKEKLELVKKLGADEVV 207 (347)
T ss_pred ccCCCCeEEEEeCCcHHHHHHHHHHHhcCC-cEEEEE--cccchHHHHHHcCCcEee
Confidence 566677767777777788888888999992 222222 245778889999986544
No 451
>PRK06953 short chain dehydrogenase; Provisional
Probab=37.41 E-value=1.8e+02 Score=23.84 Aligned_cols=51 Identities=29% Similarity=0.290 Sum_probs=36.5
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCC
Q 024022 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (274)
Q Consensus 70 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 123 (274)
+.+|+..+|.-|.++|..-...|.+++++... ..+.+.++..+.+++.++-
T Consensus 3 ~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~---~~~~~~~~~~~~~~~~~D~ 53 (222)
T PRK06953 3 TVLIVGASRGIGREFVRQYRADGWRVIATARD---AAALAALQALGAEALALDV 53 (222)
T ss_pred eEEEEcCCCchhHHHHHHHHhCCCEEEEEECC---HHHHHHHHhccceEEEecC
Confidence 34788888999999999877889987776543 2345556666777666654
No 452
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=37.17 E-value=68 Score=26.07 Aligned_cols=30 Identities=27% Similarity=0.461 Sum_probs=24.5
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 024022 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPS 101 (274)
Q Consensus 72 vv~~ssGN~g~alA~~a~~~g~~~~i~~p~ 101 (274)
|..-.+|..|.++|..+.+.|++++++-+.
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~ 31 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRS 31 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SS
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 445567999999999999999999999885
No 453
>PLN02253 xanthoxin dehydrogenase
Probab=37.06 E-value=2.3e+02 Score=24.08 Aligned_cols=32 Identities=19% Similarity=0.201 Sum_probs=26.3
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeC
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMP 100 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p 100 (274)
.+.+|+..+|.-|.++|......|.+++++-.
T Consensus 19 k~~lItGas~gIG~~la~~l~~~G~~v~~~~~ 50 (280)
T PLN02253 19 KVALVTGGATGIGESIVRLFHKHGAKVCIVDL 50 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeC
Confidence 45688889999999999998888988776644
No 454
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=37.05 E-value=2.2e+02 Score=25.84 Aligned_cols=50 Identities=16% Similarity=0.126 Sum_probs=32.3
Q ss_pred EEEeCCChHHHHHHHHHHHcCCe--EEEEeCCCCCHHHHHHHHHCCCEEEEeCC
Q 024022 72 LIELTSGNTGIGLAFIAASRGYK--LIIIMPSTYSIERRIILRALGAEVYLADP 123 (274)
Q Consensus 72 vv~~ssGN~g~alA~~a~~~g~~--~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 123 (274)
.+..++|..+..++..+ ++++ -.|++|..+-..-...++..|++++.++-
T Consensus 47 ~v~~~sgt~al~~~l~a--l~~~~Gd~Viv~~~~~~~~~~~~~~~G~~~~~~~~ 98 (380)
T TIGR03588 47 AVAFNSATSALHIACLA--LGVGPGDRVWTTPITFVATANCALYCGAKVDFVDI 98 (380)
T ss_pred EEEEcCHHHHHHHHHHH--cCCCCCCEEEeCCcchHHHHHHHHHcCCEEEEEec
Confidence 44455665555555443 4432 45777776656666778889999999875
No 455
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=36.97 E-value=2.6e+02 Score=23.59 Aligned_cols=72 Identities=15% Similarity=0.098 Sum_probs=41.7
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCH--HHHHHHH-HCCCEEEEeCCCC-ChhHHHHHHHHHHHh
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSI--ERRIILR-ALGAEVYLADPAV-GFEGFVKKGEEILNR 140 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~--~~~~~~~-~~Ga~v~~~~~~~-~~~~~~~~a~~~~~~ 140 (274)
++.+|+..++.-|.++|......|.+++++...+.+. ...+.++ ..|.++..+..+- +.++..+...+..++
T Consensus 9 k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 84 (260)
T PRK08416 9 KTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILEPETYKELFKKIDED 84 (260)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 4668888888899999999888999877664432211 1122333 3466666554332 233444444444443
No 456
>PRK06202 hypothetical protein; Provisional
Probab=36.89 E-value=46 Score=28.00 Aligned_cols=37 Identities=19% Similarity=0.368 Sum_probs=26.8
Q ss_pred CEEEEecCCcccHHHHHHHHHhhCCCcEEEEEecCCC
Q 024022 176 DAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSES 212 (274)
Q Consensus 176 d~iv~~vG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~ 212 (274)
..+=+++|+|....-++..++..+++.+|+|+++...
T Consensus 63 ~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~ 99 (232)
T PRK06202 63 TLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPR 99 (232)
T ss_pred EEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHH
Confidence 4566778888766666655556677789999998764
No 457
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=36.86 E-value=1.2e+02 Score=29.88 Aligned_cols=51 Identities=22% Similarity=0.288 Sum_probs=41.6
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCC
Q 024022 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPA 124 (274)
Q Consensus 71 ~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~ 124 (274)
+++.+..|..|+.+|..-...|++++++ . .++.+++.++.+|.+++.-+..
T Consensus 402 ~vII~G~Gr~G~~va~~L~~~g~~vvvI-D--~d~~~v~~~~~~g~~v~~GDat 452 (621)
T PRK03562 402 RVIIAGFGRFGQIVGRLLLSSGVKMTVL-D--HDPDHIETLRKFGMKVFYGDAT 452 (621)
T ss_pred cEEEEecChHHHHHHHHHHhCCCCEEEE-E--CCHHHHHHHHhcCCeEEEEeCC
Confidence 4899999999999999999999998766 2 2456788888899888877754
No 458
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=36.61 E-value=2.8e+02 Score=25.08 Aligned_cols=71 Identities=17% Similarity=0.082 Sum_probs=49.8
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeC--CCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCC
Q 024022 72 LIELTSGNTGIGLAFIAASRGYKLIIIMP--STYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTP 142 (274)
Q Consensus 72 vv~~ssGN~g~alA~~a~~~g~~~~i~~p--~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~ 142 (274)
|++..=|-.--++-.-=..++=+-++++. ..+++.-..+++.+|..|.+..+...|+-+.+.+..+.++.+
T Consensus 55 Vlttpwg~ynes~~~eI~~lnpd~VLIIGGp~AVs~~yE~~Lks~GitV~RigG~nR~ETa~~v~~~~~~~yp 127 (337)
T COG2247 55 VLTTPWGIYNESVLDEIIELNPDLVLIIGGPIAVSPNYENALKSLGITVKRIGGANRYETAEKVAKFFREDYP 127 (337)
T ss_pred eEecCcccccHHHHHHHHhhCCceEEEECCCCcCChhHHHHHHhCCcEEEEecCcchHHHHHHHHHHHHhhch
Confidence 55333355555555555566777777774 356777788999999999999988777777777777766553
No 459
>PRK05973 replicative DNA helicase; Provisional
Probab=36.60 E-value=1.6e+02 Score=25.27 Aligned_cols=54 Identities=33% Similarity=0.399 Sum_probs=38.4
Q ss_pred CCCCCCCeEEEEeCC--ChHHHH--HHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCC
Q 024022 63 GLITPGKTVLIELTS--GNTGIG--LAFIAASRGYKLIIIMPSTYSIERRIILRALGA 116 (274)
Q Consensus 63 g~~~~g~~~vv~~ss--GN~g~a--lA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga 116 (274)
|.+.+|...+|.+.. |-+..+ +|+.+.+.|-+++.|.-+..+..-.+.+..+|.
T Consensus 59 GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~~i~~R~~s~g~ 116 (237)
T PRK05973 59 SQLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQDVRDRLRALGA 116 (237)
T ss_pred CCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHcCC
Confidence 557788777777744 544444 455565679999888888777777888888874
No 460
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=36.44 E-value=2.2e+02 Score=25.41 Aligned_cols=45 Identities=20% Similarity=0.214 Sum_probs=28.7
Q ss_pred ChHHHHHHHHHHHcCCeEEEEeCCCC-C-HHHHH----HHHHCCCEEEEeC
Q 024022 78 GNTGIGLAFIAASRGYKLIIIMPSTY-S-IERRI----ILRALGAEVYLAD 122 (274)
Q Consensus 78 GN~g~alA~~a~~~g~~~~i~~p~~~-~-~~~~~----~~~~~Ga~v~~~~ 122 (274)
-|.+.|++.+++++|++++++.|+.. + ...++ ..+..|+++..++
T Consensus 157 ~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~ 207 (302)
T PRK14805 157 NNVTHSLMYGAAILGATMTVICPPGHFPDGQIVAEAQELAAKSGGKLVLTS 207 (302)
T ss_pred CccHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCEEEEEc
Confidence 46668888888888888888888742 2 22221 2345677776654
No 461
>PRK03321 putative aminotransferase; Provisional
Probab=36.43 E-value=2.9e+02 Score=24.52 Aligned_cols=29 Identities=14% Similarity=0.046 Sum_probs=18.7
Q ss_pred EEEeCCCCCHHHHHHHHHCCCEEEEeCCC
Q 024022 96 IIIMPSTYSIERRIILRALGAEVYLADPA 124 (274)
Q Consensus 96 ~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~ 124 (274)
.|++|...-..-....+.+|++++.++.+
T Consensus 100 ~Vli~~p~y~~~~~~~~~~g~~~~~v~~~ 128 (352)
T PRK03321 100 EVIFAWRSFEAYPILVQVAGATPVQVPLT 128 (352)
T ss_pred EEEeCCCCHHHHHHHHHHcCCEEEEccCC
Confidence 45556433334445677899999998753
No 462
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=36.19 E-value=2.1e+02 Score=25.89 Aligned_cols=45 Identities=22% Similarity=0.230 Sum_probs=31.1
Q ss_pred ChHHHHHHHHHHHcCCeEEEEeCCCC--CHHHHH----HHHHCCCEEEEeC
Q 024022 78 GNTGIGLAFIAASRGYKLIIIMPSTY--SIERRI----ILRALGAEVYLAD 122 (274)
Q Consensus 78 GN~g~alA~~a~~~g~~~~i~~p~~~--~~~~~~----~~~~~Ga~v~~~~ 122 (274)
.|.++|++.+++++|+.++++.|+.. +...+. ..+..|+++....
T Consensus 166 ~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 216 (332)
T PRK04284 166 NNVANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITD 216 (332)
T ss_pred cchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 48888999988899999999888743 222222 2345788776654
No 463
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=36.18 E-value=3e+02 Score=26.18 Aligned_cols=33 Identities=33% Similarity=0.330 Sum_probs=24.2
Q ss_pred eEEEEeCCChHH---HHHHHHHHHcCCeEEEEeCCC
Q 024022 70 TVLIELTSGNTG---IGLAFIAASRGYKLIIIMPST 102 (274)
Q Consensus 70 ~~vv~~ssGN~g---~alA~~a~~~g~~~~i~~p~~ 102 (274)
+.+|.+..||.| ..+|......|.++.|+++..
T Consensus 61 ~VlVlcG~GNNGGDGlv~AR~L~~~G~~V~v~~~~~ 96 (462)
T PLN03049 61 RVLALCGPGNNGGDGLVAARHLHHFGYKPSICYPKR 96 (462)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHCCCceEEEEECC
Confidence 456778888876 455566666799999998753
No 464
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=35.94 E-value=88 Score=29.79 Aligned_cols=50 Identities=18% Similarity=0.162 Sum_probs=38.0
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC--------------CH----HHHHHHHHCCCEEEE
Q 024022 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTY--------------SI----ERRIILRALGAEVYL 120 (274)
Q Consensus 71 ~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~--------------~~----~~~~~~~~~Ga~v~~ 120 (274)
.++.-.+|-.|.+.|...++.|.++++|-.... +. ...+.++.+|.+++.
T Consensus 145 ~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~ 212 (485)
T TIGR01317 145 KVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVT 212 (485)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEEC
Confidence 488889999999999999999999999854321 11 234567788988864
No 465
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=35.82 E-value=80 Score=26.33 Aligned_cols=54 Identities=20% Similarity=0.249 Sum_probs=36.9
Q ss_pred CCCCCCCeEEEEeCCCh----HHHHHHHHHHHc-CCeEEEEeCCCCCHHHHHHHHHCCC
Q 024022 63 GLITPGKTVLIELTSGN----TGIGLAFIAASR-GYKLIIIMPSTYSIERRIILRALGA 116 (274)
Q Consensus 63 g~~~~g~~~vv~~ssGN----~g~alA~~a~~~-g~~~~i~~p~~~~~~~~~~~~~~Ga 116 (274)
|-+-+|...+|+...|. .+..+++.+.+. |-+|+.|.-+..+..-++.++.+|-
T Consensus 14 GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~ 72 (226)
T PF06745_consen 14 GGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGW 72 (226)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS
T ss_pred CCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCC
Confidence 44566677788876665 566666666566 9999888877777777888888875
No 466
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=35.79 E-value=1.2e+02 Score=27.95 Aligned_cols=56 Identities=18% Similarity=0.243 Sum_probs=38.3
Q ss_pred CCchhhHHHHHHHHH----HHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeC
Q 024022 44 CSSVKDRIAYSMIKD----AEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMP 100 (274)
Q Consensus 44 tGS~K~R~a~~~~~~----a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p 100 (274)
.|.+..-.|.+.+.. +.+.|....|.+ |..-..||.|..+|..++.+|++++++=|
T Consensus 88 pg~na~aVAE~v~~~lL~l~r~~g~~l~gkt-vGIIG~G~IG~~va~~l~a~G~~V~~~Dp 147 (381)
T PRK00257 88 PGCNARGVVDYVLGSLLTLAEREGVDLAERT-YGVVGAGHVGGRLVRVLRGLGWKVLVCDP 147 (381)
T ss_pred CCcChHHHHHHHHHHHHHHhcccCCCcCcCE-EEEECCCHHHHHHHHHHHHCCCEEEEECC
Confidence 355555556555543 334444334444 77788899999999999999999988755
No 467
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=35.78 E-value=3e+02 Score=25.00 Aligned_cols=60 Identities=13% Similarity=0.009 Sum_probs=35.1
Q ss_pred HHHHHcCCeEEEEeCCCC------------CHHHHHHHHHCCCEEEEeCCCCCh--hHHHHHHHHHHHhCCCeE
Q 024022 86 FIAASRGYKLIIIMPSTY------------SIERRIILRALGAEVYLADPAVGF--EGFVKKGEEILNRTPNGY 145 (274)
Q Consensus 86 ~~a~~~g~~~~i~~p~~~------------~~~~~~~~~~~Ga~v~~~~~~~~~--~~~~~~a~~~~~~~~~~~ 145 (274)
..|.+.++|+++++-++- ...-....+.||...+.|++.+.. ..+.+.+.+.+.+.++..
T Consensus 179 n~A~~~~LPvifvv~NN~~~i~~~~~~~~~~~d~a~~a~a~G~~~~~Vdg~d~~av~~a~~~A~~~ar~~~gP~ 252 (341)
T CHL00149 179 NMAVLWKLPIIFVVENNQWAIGMAHHRSTSIPEIHKKAEAFGLPGIEVDGMDVLAVREVAKEAVERARQGDGPT 252 (341)
T ss_pred HHHhhcCCCEEEEEEeCCeeeecchhheeCCccHHHHHHhCCCCEEEEeCCCHHHHHHHHHHHHHHHHhCCCCE
Confidence 347778999888886543 112345667899999999875311 122344444444433333
No 468
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=35.60 E-value=3.4e+02 Score=24.66 Aligned_cols=30 Identities=13% Similarity=0.185 Sum_probs=26.9
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 024022 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPS 101 (274)
Q Consensus 72 vv~~ssGN~g~alA~~a~~~g~~~~i~~p~ 101 (274)
|..-.-|+.|.++|...+.+|++++++.+.
T Consensus 19 VGIIG~GsIG~amA~nL~d~G~~ViV~~r~ 48 (335)
T PRK13403 19 VAVIGYGSQGHAQAQNLRDSGVEVVVGVRP 48 (335)
T ss_pred EEEEeEcHHHHHHHHHHHHCcCEEEEEECc
Confidence 777788999999999999999999998765
No 469
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=35.56 E-value=2.3e+02 Score=25.71 Aligned_cols=45 Identities=24% Similarity=0.361 Sum_probs=31.9
Q ss_pred ChHHHHHHHHHHHcCCeEEEEeCCC--CCHHHHHHHH----HCCCEEEEeC
Q 024022 78 GNTGIGLAFIAASRGYKLIIIMPST--YSIERRIILR----ALGAEVYLAD 122 (274)
Q Consensus 78 GN~g~alA~~a~~~g~~~~i~~p~~--~~~~~~~~~~----~~Ga~v~~~~ 122 (274)
.|.+.+++.+++++|++++++.|+. .+...+..++ ..|+++....
T Consensus 164 ~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 214 (338)
T PRK02255 164 TQVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTD 214 (338)
T ss_pred chHHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEEc
Confidence 6888999999999999999999874 3333333332 4687776654
No 470
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=35.56 E-value=2.7e+02 Score=23.52 Aligned_cols=72 Identities=22% Similarity=0.131 Sum_probs=38.9
Q ss_pred CeEEEEeCC--ChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHH-HC-CCEEEEeCCCC-ChhHHHHHHHHHHHh
Q 024022 69 KTVLIELTS--GNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILR-AL-GAEVYLADPAV-GFEGFVKKGEEILNR 140 (274)
Q Consensus 69 ~~~vv~~ss--GN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~-~~-Ga~v~~~~~~~-~~~~~~~~a~~~~~~ 140 (274)
++.+|+..+ +.-|.++|..-.+.|.++++.-.......+++.+. .. |.+++.+..+- +.++..+...+..++
T Consensus 8 k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 84 (257)
T PRK08594 8 KTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITACFETIKEE 84 (257)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHHHh
Confidence 455677754 67999999998889998776543222223333332 22 55555443321 233333444444443
No 471
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=35.43 E-value=2.7e+02 Score=23.48 Aligned_cols=31 Identities=29% Similarity=0.355 Sum_probs=26.0
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCC
Q 024022 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPST 102 (274)
Q Consensus 72 vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~ 102 (274)
+....+||-|.++|......|.+++|--.+.
T Consensus 4 ~~i~GtGniG~alA~~~a~ag~eV~igs~r~ 34 (211)
T COG2085 4 IAIIGTGNIGSALALRLAKAGHEVIIGSSRG 34 (211)
T ss_pred EEEeccChHHHHHHHHHHhCCCeEEEecCCC
Confidence 5667899999999999999999988775553
No 472
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=35.33 E-value=2e+02 Score=26.39 Aligned_cols=22 Identities=27% Similarity=0.626 Sum_probs=12.8
Q ss_pred HHHHHHhhCCCCCEEEEecCCcccH
Q 024022 164 GPEIWNDSGGKVDAFIAGIGTGGTV 188 (274)
Q Consensus 164 ~~Ei~~q~~~~~d~iv~~vG~Gg~~ 188 (274)
+.+++++. ++| +|+++|+|..+
T Consensus 78 ~~~~~~~~--~~D-~IiaiGGGSvi 99 (379)
T TIGR02638 78 GVAAFKAS--GAD-YLIAIGGGSPI 99 (379)
T ss_pred HHHHHHhc--CCC-EEEEeCChHHH
Confidence 33444443 466 45788877655
No 473
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=35.27 E-value=2.2e+02 Score=26.65 Aligned_cols=77 Identities=10% Similarity=-0.055 Sum_probs=45.9
Q ss_pred CCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCCh--HHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHH----C
Q 024022 41 MQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGN--TGIGLAFIAASRGYKLIIIMPSTYSIERRIILRA----L 114 (274)
Q Consensus 41 ~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN--~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~----~ 114 (274)
.+|+|+=|--.+..+...+.++|. ...+|++-+-- ..-.+..++...|+++.+.. .+..-...++. -
T Consensus 212 vGptGvGKTTt~akLA~~l~~~g~----~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~---dp~dL~~al~~l~~~~ 284 (407)
T PRK12726 212 IGQTGVGKTTTLVKLGWQLLKQNR----TVGFITTDTFRSGAVEQFQGYADKLDVELIVAT---SPAELEEAVQYMTYVN 284 (407)
T ss_pred ECCCCCCHHHHHHHHHHHHHHcCC----eEEEEeCCccCccHHHHHHHHhhcCCCCEEecC---CHHHHHHHHHHHHhcC
Confidence 357888888888777777766664 34455553222 23467778888888876432 12222223332 3
Q ss_pred CCEEEEeCCC
Q 024022 115 GAEVYLADPA 124 (274)
Q Consensus 115 Ga~v~~~~~~ 124 (274)
+.++++++..
T Consensus 285 ~~D~VLIDTA 294 (407)
T PRK12726 285 CVDHILIDTV 294 (407)
T ss_pred CCCEEEEECC
Confidence 5688888754
No 474
>PRK06123 short chain dehydrogenase; Provisional
Probab=35.23 E-value=2.4e+02 Score=23.29 Aligned_cols=54 Identities=22% Similarity=0.274 Sum_probs=33.8
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC--HHHHHHHHHCCCEEEEeCC
Q 024022 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS--IERRIILRALGAEVYLADP 123 (274)
Q Consensus 70 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~--~~~~~~~~~~Ga~v~~~~~ 123 (274)
+.+|+..+|.-|.++|..-.+.|..+++....... ......++..|.+++.+..
T Consensus 4 ~~lVtG~~~~iG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 59 (248)
T PRK06123 4 VMIITGASRGIGAATALLAAERGYAVCLNYLRNRDAAEAVVQAIRRQGGEALAVAA 59 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCeEEEecCCCHHHHHHHHHHHHhCCCcEEEEEe
Confidence 45788888889999998877788775544322211 1223345566777655543
No 475
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=35.19 E-value=2.7e+02 Score=27.72 Aligned_cols=54 Identities=26% Similarity=0.261 Sum_probs=37.6
Q ss_pred CCCCeEEEEeCCChHHHHHHHHHHHcCCe-EEEEeCCC---C--CHHHHHHHHHCCCEEEE
Q 024022 66 TPGKTVLIELTSGNTGIGLAFIAASRGYK-LIIIMPST---Y--SIERRIILRALGAEVYL 120 (274)
Q Consensus 66 ~~g~~~vv~~ssGN~g~alA~~a~~~g~~-~~i~~p~~---~--~~~~~~~~~~~Ga~v~~ 120 (274)
..|++ |+.-.+||.|.-+|..+.++|.+ ++++.+.. . ....+......|.+++.
T Consensus 321 ~~gk~-VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mpa~~~ei~~a~~eGV~i~~ 380 (652)
T PRK12814 321 HPGKK-VVVIGGGNTAIDAARTALRLGAESVTILYRRTREEMPANRAEIEEALAEGVSLRE 380 (652)
T ss_pred cCCCe-EEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHcCCcEEe
Confidence 34444 88889999999999999999974 77776542 1 23334444567887765
No 476
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=35.18 E-value=1.7e+02 Score=27.52 Aligned_cols=49 Identities=24% Similarity=0.244 Sum_probs=35.5
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC--CHHHHHHHHHCCCEEEE
Q 024022 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTY--SIERRIILRALGAEVYL 120 (274)
Q Consensus 72 vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~--~~~~~~~~~~~Ga~v~~ 120 (274)
++....|..|+++|.+.+..|.+++++=..+. .....+.++..|.+++.
T Consensus 19 v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~ 69 (480)
T PRK01438 19 VVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRL 69 (480)
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEE
Confidence 77778899999999999999999777643322 12234567778877753
No 477
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=35.16 E-value=1.6e+02 Score=29.74 Aligned_cols=51 Identities=20% Similarity=0.201 Sum_probs=38.1
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCe-EEEEeCCC---C--CHHHHHHHHHCCCEEEEe
Q 024022 71 VLIELTSGNTGIGLAFIAASRGYK-LIIIMPST---Y--SIERRIILRALGAEVYLA 121 (274)
Q Consensus 71 ~vv~~ssGN~g~alA~~a~~~g~~-~~i~~p~~---~--~~~~~~~~~~~Ga~v~~~ 121 (274)
.||....||.|.-+|..+.++|.+ ++++.... . ....+..++..|.+++.-
T Consensus 572 ~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~~~~e~~~~~~~GV~i~~~ 628 (752)
T PRK12778 572 KVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEEMPARLEEVKHAKEEGIEFLTL 628 (752)
T ss_pred cEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHcCCEEEec
Confidence 388899999999999999999998 88887642 1 223344567788887643
No 478
>PRK07856 short chain dehydrogenase; Provisional
Probab=35.12 E-value=2.6e+02 Score=23.30 Aligned_cols=33 Identities=18% Similarity=0.257 Sum_probs=26.8
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPS 101 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~ 101 (274)
.+.+|+..+|--|.++|......|.+++++...
T Consensus 7 k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~ 39 (252)
T PRK07856 7 RVVLVTGGTRGIGAGIARAFLAAGATVVVCGRR 39 (252)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 456888888889999999988889987776554
No 479
>PLN02591 tryptophan synthase
Probab=35.10 E-value=3e+02 Score=23.82 Aligned_cols=31 Identities=26% Similarity=0.325 Sum_probs=14.4
Q ss_pred HHHHHHHHcCCeEEEEeCCCCCHHHHHHHHH
Q 024022 83 GLAFIAASRGYKLIIIMPSTYSIERRIILRA 113 (274)
Q Consensus 83 alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~ 113 (274)
-+...|+.+|+..+.+++.++++.+++.+..
T Consensus 122 ~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~ 152 (250)
T PLN02591 122 ALRAEAAKNGIELVLLTTPTTPTERMKAIAE 152 (250)
T ss_pred HHHHHHHHcCCeEEEEeCCCCCHHHHHHHHH
Confidence 3444445555555555544444444444433
No 480
>PRK08862 short chain dehydrogenase; Provisional
Probab=35.09 E-value=2.7e+02 Score=23.21 Aligned_cols=74 Identities=12% Similarity=0.025 Sum_probs=41.1
Q ss_pred HHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhchHHHHHHhhCCCCCEEEEecCC
Q 024022 106 ERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGT 184 (274)
Q Consensus 106 ~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~iv~~vG~ 184 (274)
.-...+...|++|+.+..+. +...+...++.+ .+......+.+ -... .....+..++.++++..+|.+|..+|.
T Consensus 20 aia~~la~~G~~V~~~~r~~--~~l~~~~~~i~~-~~~~~~~~~~D-~~~~-~~~~~~~~~~~~~~g~~iD~li~nag~ 93 (227)
T PRK08862 20 TISCHFARLGATLILCDQDQ--SALKDTYEQCSA-LTDNVYSFQLK-DFSQ-ESIRHLFDAIEQQFNRAPDVLVNNWTS 93 (227)
T ss_pred HHHHHHHHCCCEEEEEcCCH--HHHHHHHHHHHh-cCCCeEEEEcc-CCCH-HHHHHHHHHHHHHhCCCCCEEEECCcc
Confidence 44566777899999987542 222222233322 22222211222 2233 245556677888875479999999874
No 481
>PRK06841 short chain dehydrogenase; Provisional
Probab=35.04 E-value=2.7e+02 Score=23.21 Aligned_cols=33 Identities=18% Similarity=0.292 Sum_probs=26.2
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPS 101 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~ 101 (274)
.+.+|+..+|--|.++|....+.|.+++++...
T Consensus 16 k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~ 48 (255)
T PRK06841 16 KVAVVTGGASGIGHAIAELFAAKGARVALLDRS 48 (255)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 455788888889999999988899987666543
No 482
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=35.00 E-value=2.6e+02 Score=23.17 Aligned_cols=34 Identities=18% Similarity=0.280 Sum_probs=27.1
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 024022 68 GKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPS 101 (274)
Q Consensus 68 g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~ 101 (274)
+.+.+|+..+|..|.+++......|..++++...
T Consensus 12 ~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~ 45 (247)
T PRK08945 12 DRIILVTGAGDGIGREAALTYARHGATVILLGRT 45 (247)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCC
Confidence 3566888899999999999888889977665543
No 483
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=34.91 E-value=1.5e+02 Score=26.35 Aligned_cols=58 Identities=19% Similarity=0.200 Sum_probs=40.9
Q ss_pred CCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCH----HHHHHHHHCCCEEEEeCC
Q 024022 65 ITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSI----ERRIILRALGAEVYLADP 123 (274)
Q Consensus 65 ~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~----~~~~~~~~~Ga~v~~~~~ 123 (274)
+..|.+ |++.+.+.+...+-..|.+.|.++.+++.++-|. ...+.+...|-.+..+..
T Consensus 113 i~~g~~-ILT~~~S~tv~~~l~~a~~~~~~f~V~v~EsrP~~~G~~~a~~L~~~gI~vtlI~D 174 (301)
T TIGR00511 113 IRDGDV-VMTHCNSEAALSVIKTAFEQGKDIEVIATETRPRKQGHITAKELRDYGIPVTLIVD 174 (301)
T ss_pred cCCCCE-EEEECCcHHHHHHHHHHHHcCCcEEEEEecCCCcchHHHHHHHHHHCCCCEEEEeh
Confidence 334454 8887766666666666777888899999876552 336677788999988863
No 484
>PRK04635 histidinol-phosphate aminotransferase; Provisional
Probab=34.90 E-value=3.3e+02 Score=24.30 Aligned_cols=51 Identities=10% Similarity=-0.098 Sum_probs=27.8
Q ss_pred EEEeCCChHHHHHHHHHHHcCCe--EEEEeCCCCCHHHHHHHHHCCCEEEEeCCC
Q 024022 72 LIELTSGNTGIGLAFIAASRGYK--LIIIMPSTYSIERRIILRALGAEVYLADPA 124 (274)
Q Consensus 72 vv~~ssGN~g~alA~~a~~~g~~--~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~ 124 (274)
|+..+.+..+..++.. .+.-+ -.|+++.-+-..-....+.+|++++.++-+
T Consensus 80 I~it~Gs~~~i~~~~~--~~~~~g~d~vlv~~P~y~~y~~~~~~~g~~v~~v~~~ 132 (354)
T PRK04635 80 ILTSRGADEAIELLIR--AFCEPGQDSIACFGPTYGMYAISAETFNVGVKALPLT 132 (354)
T ss_pred EEEeCCHHHHHHHHHH--HhcCCCCCeEEEcCCChHHHHHHHHHcCCEEEEEecC
Confidence 5555555555555443 33221 234455433333334568899999988753
No 485
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.
Probab=34.86 E-value=2.5e+02 Score=22.90 Aligned_cols=52 Identities=27% Similarity=0.200 Sum_probs=35.4
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC--HHHHHHHHHCCCEEEEeCC
Q 024022 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS--IERRIILRALGAEVYLADP 123 (274)
Q Consensus 72 vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~--~~~~~~~~~~Ga~v~~~~~ 123 (274)
+|+..+|-.|..+|......|.+++++.....+ ......++..|+++..+..
T Consensus 2 lItG~~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (239)
T TIGR01830 2 LVTGASRGIGRAIALKLAKEGAKVIITYRSSEEGAEEVVEELKAYGVKALGVVC 55 (239)
T ss_pred EEECCCcHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEe
Confidence 677888889999998888889987666544311 1233456667877765553
No 486
>PRK09105 putative aminotransferase; Provisional
Probab=34.80 E-value=2.4e+02 Score=25.56 Aligned_cols=52 Identities=12% Similarity=0.017 Sum_probs=31.3
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCC
Q 024022 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPA 124 (274)
Q Consensus 72 vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~ 124 (274)
|+...++..+..++..+- .+-.-.|++++-.-..-....+.+|++++.++-+
T Consensus 98 I~it~Gs~~ai~~~~~~l-~~~gd~Vli~~P~y~~~~~~~~~~g~~~~~v~~~ 149 (370)
T PRK09105 98 VMAYAGSSEPLNYAVLAF-TSPTAGLVTADPTYEAGWRAADAQGAPVAKVPLR 149 (370)
T ss_pred EEEcCChHHHHHHHHHHH-cCCCCEEEEeCCChHHHHHHHHHcCCeEEEecCC
Confidence 666666666666655432 2222235555544444466788899999988643
No 487
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=34.80 E-value=4.1e+02 Score=25.34 Aligned_cols=84 Identities=26% Similarity=0.294 Sum_probs=44.4
Q ss_pred hhhHHHHHHHHHHHHcCCCCCCCeEEEEe-CCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHH-HHCCCEEEEeCC-
Q 024022 47 VKDRIAYSMIKDAEDKGLITPGKTVLIEL-TSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIIL-RALGAEVYLADP- 123 (274)
Q Consensus 47 ~K~R~a~~~~~~a~~~g~~~~g~~~vv~~-ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~-~~~Ga~v~~~~~- 123 (274)
..+..+...+.-|...+. .. +|++ .||++++.+|.+ +-..|.+++.|+. ...+.+ -.+|..-+.++.
T Consensus 357 ~~~~ia~~a~~~a~~~~a----ka-IVv~T~SG~TA~~vSr~--rp~~PIiAvT~~~---~v~R~L~L~wGV~Pil~~~~ 426 (473)
T TIGR01064 357 ITEAIALSAVEAAEKLDA----KA-IVVLTESGRTARLLSKY--RPNAPIIAVTPNE---RVARQLALYWGVFPFLVDEE 426 (473)
T ss_pred hHHHHHHHHHHHHhhcCC----CE-EEEEcCChHHHHHHHhh--CCCCCEEEEcCCH---HHHHHhhccCCcEEEEeCCC
Confidence 345555555555555543 33 5544 468777777665 4456777777652 222222 235766666653
Q ss_pred CCChhHHHHHHHHHHHh
Q 024022 124 AVGFEGFVKKGEEILNR 140 (274)
Q Consensus 124 ~~~~~~~~~~a~~~~~~ 140 (274)
..+.+.....+.+.+++
T Consensus 427 ~~~~~~~i~~a~~~l~~ 443 (473)
T TIGR01064 427 PSDTEARVNKALELLKE 443 (473)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 22233445555555544
No 488
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=34.72 E-value=60 Score=25.24 Aligned_cols=31 Identities=26% Similarity=0.491 Sum_probs=26.0
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCC
Q 024022 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPST 102 (274)
Q Consensus 72 vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~ 102 (274)
++.+..|.-+.+++..++.+|++++++=|..
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~ 31 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRP 31 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-C
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 4567889999999999999999999999874
No 489
>PTZ00331 alpha/beta hydrolase; Provisional
Probab=34.68 E-value=2.5e+02 Score=23.38 Aligned_cols=58 Identities=19% Similarity=0.216 Sum_probs=37.7
Q ss_pred HHHcCCCCCCCeEEEEeCCChHHH-HHHHHHHHcCCeEEEEeCCCCC--HH----HHHHHHHCCCEEEE
Q 024022 59 AEDKGLITPGKTVLIELTSGNTGI-GLAFIAASRGYKLIIIMPSTYS--IE----RRIILRALGAEVYL 120 (274)
Q Consensus 59 a~~~g~~~~g~~~vv~~ssGN~g~-alA~~a~~~g~~~~i~~p~~~~--~~----~~~~~~~~Ga~v~~ 120 (274)
+.+.|. ++.+++.-..|.+. +.|.-+...|++++++.....+ +. -++.|+.+|++|+.
T Consensus 141 L~~~gi----~~lvi~G~~t~~CV~~Ta~~a~~~g~~v~vv~Da~~~~~~~~~~~al~~~~~~g~~v~~ 205 (212)
T PTZ00331 141 LKAHGV----RRVFICGLAFDFCVLFTALDAVKLGFKVVVLEDATRAVDPDAISKQRAELLEAGVILLT 205 (212)
T ss_pred HHHCCC----CEEEEEEeccCHHHHHHHHHHHHCCCEEEEeCcCccCCCHHHHHHHHHHHHHCCCEEEe
Confidence 344564 45566667778885 4555588889988888775332 22 25667788888763
No 490
>smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group.
Probab=34.64 E-value=2e+02 Score=21.77 Aligned_cols=53 Identities=32% Similarity=0.313 Sum_probs=33.2
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEe-CCCCCHH----HHHHHHHCCCEEEEeCC
Q 024022 71 VLIELTSGNTGIGLAFIAASRGYKLIIIM-PSTYSIE----RRIILRALGAEVYLADP 123 (274)
Q Consensus 71 ~vv~~ssGN~g~alA~~a~~~g~~~~i~~-p~~~~~~----~~~~~~~~Ga~v~~~~~ 123 (274)
.+|+..+|..|.+++....+.|...++++ ....+.. .+..++..|.++..+..
T Consensus 3 ~li~Ga~~~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (180)
T smart00822 3 YLITGGLGGLGLELARWLAERGARHLVLLSRSGPDAPGAAELLAELEALGAEVTVVAC 60 (180)
T ss_pred EEEEcCCChHHHHHHHHHHHhhCCeEEEEeCCCCCCccHHHHHHHHHhcCCeEEEEEC
Confidence 36777888899999988888887544444 3222211 13555667777766654
No 491
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=34.58 E-value=2.2e+02 Score=25.31 Aligned_cols=23 Identities=17% Similarity=0.182 Sum_probs=11.1
Q ss_pred EEEEeCCCCChhHHHHHHHHHHHh
Q 024022 117 EVYLADPAVGFEGFVKKGEEILNR 140 (274)
Q Consensus 117 ~v~~~~~~~~~~~~~~~a~~~~~~ 140 (274)
+|+.++.....++ ...++++.+.
T Consensus 143 ~V~v~EsrP~~~G-~~~a~~L~~~ 165 (301)
T TIGR00511 143 EVIATETRPRKQG-HITAKELRDY 165 (301)
T ss_pred EEEEecCCCcchH-HHHHHHHHHC
Confidence 4444443323334 5566666654
No 492
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=34.57 E-value=52 Score=22.83 Aligned_cols=31 Identities=19% Similarity=0.224 Sum_probs=23.6
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 024022 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPS 101 (274)
Q Consensus 70 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~ 101 (274)
..||+...|.++.+ |..|+.+|+|+++=++.
T Consensus 32 ~Giv~~~Gg~~SH~-aIlAr~~giP~ivg~~~ 62 (80)
T PF00391_consen 32 AGIVTEEGGPTSHA-AILARELGIPAIVGVGD 62 (80)
T ss_dssp SEEEESSSSTTSHH-HHHHHHTT-EEEESTTT
T ss_pred EEEEEEcCCccchH-HHHHHHcCCCEEEeecc
Confidence 44888877777665 88899999999987764
No 493
>PRK07326 short chain dehydrogenase; Provisional
Probab=34.56 E-value=2.6e+02 Score=22.93 Aligned_cols=32 Identities=31% Similarity=0.363 Sum_probs=26.3
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeC
Q 024022 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMP 100 (274)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p 100 (274)
.+.+|+..+|..|.+++......|.+++++..
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g~~V~~~~r 38 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEGYKVAITAR 38 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEeeC
Confidence 45578888999999999998888999776654
No 494
>PRK05826 pyruvate kinase; Provisional
Probab=34.54 E-value=4.2e+02 Score=25.31 Aligned_cols=124 Identities=12% Similarity=0.100 Sum_probs=69.3
Q ss_pred HHHHHHHHcCCeEEEE-----------eCCCCCHHHHHHHHHCCCEEEEeCCCC---Ch-hHHHHHHHHHHHhCCCeEee
Q 024022 83 GLAFIAASRGYKLIII-----------MPSTYSIERRIILRALGAEVYLADPAV---GF-EGFVKKGEEILNRTPNGYIL 147 (274)
Q Consensus 83 alA~~a~~~g~~~~i~-----------~p~~~~~~~~~~~~~~Ga~v~~~~~~~---~~-~~~~~~a~~~~~~~~~~~~~ 147 (274)
-+...|++.|.++.+- .|..+....+...-..|++-+...++. .| .++.+...+.+++....++.
T Consensus 263 ~Ii~~c~~~gKpvi~ATqmLeSM~~~p~PTRAEvsDVanav~dG~D~vmLS~ETA~G~yPveaV~~m~~I~~~aE~~~~~ 342 (465)
T PRK05826 263 KIIRKAREAGKPVITATQMLESMIENPRPTRAEVSDVANAVLDGTDAVMLSGETAAGKYPVEAVEAMARICKGAEKEFSI 342 (465)
T ss_pred HHHHHHHHcCCCEEEECHHHHHHhhCCCCchhhhhhHHHHHHcCCcEEEeccccccCcCHHHHHHHHHHHHHHHHhccch
Confidence 3455688899998763 233333344555566799888776431 22 34444444443322111111
Q ss_pred ----CCCCCC--cchHhhhhchHHHHHHhhCCCCCEEEEecCCcccHHHHHHHHHhhCCCcEEEEEecCCC
Q 024022 148 ----GQFENP--ANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSES 212 (274)
Q Consensus 148 ----~~~~~~--~~~~~g~~t~~~Ei~~q~~~~~d~iv~~vG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~ 212 (274)
...... ... ......+.++.++++ +.+.||+..-+|.++--+ ....|...|+++.+...
T Consensus 343 ~~~~~~~~~~~~~~~-~~ia~aa~~~a~~l~-~a~~Ivv~T~sG~ta~~i----sk~RP~~pI~~~t~~~~ 407 (465)
T PRK05826 343 NLSKHRLDRQFDRID-EAIAMSAMYAANHLK-GVKAIVALTESGRTARLI----SRFRPGAPIFAVTRDEK 407 (465)
T ss_pred hhhhhhccccccchH-HHHHHHHHHHHHhcC-CCCEEEEECCCcHHHHHH----HhhCCCCCEEEEcCCHH
Confidence 000010 112 234555667777773 157899998898886544 44479999999986543
No 495
>PRK07023 short chain dehydrogenase; Provisional
Probab=34.53 E-value=2.5e+02 Score=23.21 Aligned_cols=49 Identities=16% Similarity=0.133 Sum_probs=34.4
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCC
Q 024022 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (274)
Q Consensus 71 ~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 123 (274)
.+|+..+|.-|.++|......|.+++++.....+ . .....|.++..+..
T Consensus 4 vlItGasggiG~~ia~~l~~~G~~v~~~~r~~~~-~---~~~~~~~~~~~~~~ 52 (243)
T PRK07023 4 AIVTGHSRGLGAALAEQLLQPGIAVLGVARSRHP-S---LAAAAGERLAEVEL 52 (243)
T ss_pred EEEecCCcchHHHHHHHHHhCCCEEEEEecCcch-h---hhhccCCeEEEEEe
Confidence 4788899999999999988889998776554322 1 13445767765543
No 496
>PRK12831 putative oxidoreductase; Provisional
Probab=34.28 E-value=1.4e+02 Score=28.34 Aligned_cols=29 Identities=28% Similarity=0.306 Sum_probs=26.3
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEe
Q 024022 71 VLIELTSGNTGIGLAFIAASRGYKLIIIM 99 (274)
Q Consensus 71 ~vv~~ssGN~g~alA~~a~~~g~~~~i~~ 99 (274)
.|+.-.+|-.|.+.|+..+++|++++||=
T Consensus 142 ~V~IIG~GpAGl~aA~~l~~~G~~V~v~e 170 (464)
T PRK12831 142 KVAVIGSGPAGLTCAGDLAKMGYDVTIFE 170 (464)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEe
Confidence 48888999999999999999999998884
No 497
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=34.25 E-value=2.4e+02 Score=23.65 Aligned_cols=30 Identities=23% Similarity=0.338 Sum_probs=24.6
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeC
Q 024022 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMP 100 (274)
Q Consensus 71 ~vv~~ssGN~g~alA~~a~~~g~~~~i~~p 100 (274)
.+|+.++|.-|.++|....+.|.++++.-.
T Consensus 3 vlItGas~gIG~aia~~l~~~G~~V~~~~r 32 (259)
T PRK08340 3 VLVTASSRGIGFNVARELLKKGARVVISSR 32 (259)
T ss_pred EEEEcCCcHHHHHHHHHHHHcCCEEEEEeC
Confidence 478888888999999998889998666544
No 498
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=34.20 E-value=1.9e+02 Score=25.94 Aligned_cols=51 Identities=20% Similarity=0.107 Sum_probs=37.3
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCe-EEEEeCCC-----CCHHHHHHHHHCCCEEEEe
Q 024022 71 VLIELTSGNTGIGLAFIAASRGYK-LIIIMPST-----YSIERRIILRALGAEVYLA 121 (274)
Q Consensus 71 ~vv~~ssGN~g~alA~~a~~~g~~-~~i~~p~~-----~~~~~~~~~~~~Ga~v~~~ 121 (274)
.++...+|+.|.-+|......|.+ ++++.... .....++.++..|.+++.-
T Consensus 174 ~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~~~~~~~~~~~l~~~gi~i~~~ 230 (352)
T PRK12770 174 KVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINEAPAGKYEIERLIARGVEFLEL 230 (352)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhhCCCCHHHHHHHHHcCCEEeec
Confidence 488889999999999887788997 88876532 1234456677788877653
No 499
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=34.15 E-value=1.6e+02 Score=23.66 Aligned_cols=66 Identities=20% Similarity=0.229 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCC--CCHHH--HHHHHHCC---CEEEEeCC
Q 024022 51 IAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPST--YSIER--RIILRALG---AEVYLADP 123 (274)
Q Consensus 51 ~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~--~~~~~--~~~~~~~G---a~v~~~~~ 123 (274)
.+...+..+.+.|. + ++..| |.+-......++++|+.-.++.... .|..| .+.++.++ .+|..++.
T Consensus 131 ~~~~~l~~L~~~Gi-----~-~~i~T-GD~~~~a~~~~~~lgi~~~~v~a~~~~kP~~k~~~~~i~~l~~~~~~v~~vGD 203 (215)
T PF00702_consen 131 GAKEALQELKEAGI-----K-VAILT-GDNESTASAIAKQLGIFDSIVFARVIGKPEPKIFLRIIKELQVKPGEVAMVGD 203 (215)
T ss_dssp THHHHHHHHHHTTE-----E-EEEEE-SSEHHHHHHHHHHTTSCSEEEEESHETTTHHHHHHHHHHHHTCTGGGEEEEES
T ss_pred hhhhhhhhhhccCc-----c-eeeee-ccccccccccccccccccccccccccccccchhHHHHHHHHhcCCCEEEEEcc
Confidence 46777777778874 3 55555 4444455667889999666666665 78888 78888766 36777764
No 500
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=34.05 E-value=3.9e+02 Score=24.83 Aligned_cols=125 Identities=10% Similarity=0.051 Sum_probs=71.9
Q ss_pred EEEeCCChHHHHHHHHHHHc--CCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCC
Q 024022 72 LIELTSGNTGIGLAFIAASR--GYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQ 149 (274)
Q Consensus 72 vv~~ssGN~g~alA~~a~~~--g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 149 (274)
.|..|+|+-|.+..-+.+++ .++++.+.-..-...-.++.+.|+.+.+.+... . .+.++.+...+
T Consensus 5 aILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~~n~~~l~~q~~~f~p~~v~i~~~----~---~~~~l~~~l~~------ 71 (385)
T PRK05447 5 TILGSTGSIGTQTLDVIRRNPDRFRVVALSAGKNVELLAEQAREFRPKYVVVADE----E---AAKELKEALAA------ 71 (385)
T ss_pred EEEcCChHHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCH----H---HHHHHHHhhcc------
Confidence 55668999998877666665 567777665444445566788899999888632 1 12222211100
Q ss_pred CCCCcchHhhhhchHHHHHHhhCCCCCEEEEecCCcccHHHHHHHHHhhC-----------------------CCcEEEE
Q 024022 150 FENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKN-----------------------PNIKVYG 206 (274)
Q Consensus 150 ~~~~~~~~~g~~t~~~Ei~~q~~~~~d~iv~~vG~Gg~~~Gi~~~~k~~~-----------------------~~~~vig 206 (274)
.+.. +..|... ..|+.+. +++|.|+.++++...+.-+..+++... ...+++-
T Consensus 72 -~~~~-v~~G~~~-~~~l~~~--~~vD~Vv~Ai~G~aGl~ptl~Ai~aGK~VaLANKEslV~aG~~i~~~a~~~g~~i~P 146 (385)
T PRK05447 72 -AGIE-VLAGEEG-LCELAAL--PEADVVVAAIVGAAGLLPTLAAIRAGKRIALANKESLVCAGELVMDAAKKSGAQILP 146 (385)
T ss_pred -CCce-EEEChhH-HHHHhcC--CCCCEEEEeCcCcccHHHHHHHHHCCCcEEEeCHHHHHhhHHHHHHHHHHcCCeEEE
Confidence 0111 1112111 1233332 358999999887655555666665422 1468888
Q ss_pred EecCCCcc
Q 024022 207 IEPSESAV 214 (274)
Q Consensus 207 ve~~~~~~ 214 (274)
|+++.++.
T Consensus 147 VDSEh~ai 154 (385)
T PRK05447 147 VDSEHSAI 154 (385)
T ss_pred ECHHHHHH
Confidence 88887753
Done!