BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024025
(273 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SCH|A Chain A, Peanut Peroxidase
pdb|1SCH|B Chain B, Peanut Peroxidase
Length = 294
Score = 265 bits (676), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 133/248 (53%), Positives = 160/248 (64%), Gaps = 1/248 (0%)
Query: 27 QGCDGSVLLDDTANFIGEKTAVPNNNSARGFNVVDQIKANLEKACPRVVSCADILAIAAR 86
QGCD SVLLDDT+NF GEKTA PN NS RGF V+D IK+ +E CP VVSCADILA+AAR
Sbjct: 47 QGCDASVLLDDTSNFTGEKTAGPNANSIRGFEVIDTIKSQVESLCPGVVSCADILAVAAR 106
Query: 87 DSVV-FGGPSWKVRLGXXXXXXXXXXXXXXXIPPPTSNLSALISSFSAQGLSLKNMVALA 145
DSVV GG SW V LG +P P NLS LIS+FS +G + K +V L+
Sbjct: 107 DSVVALGGASWNVLLGRRDSTTASLSSANSDLPAPFFNLSGLISAFSNKGFTTKELVTLS 166
Query: 146 GGHTVGKARCTSFRGHIYNDSNIDTSFARSLQQRCPRRGNDNVLANLDRQTPTCFDXXXX 205
G HT+G+A+CT+FR IYN+SNID ++A+SLQ CP G D L+ D TP FD
Sbjct: 167 GAHTIGQAQCTAFRTRIYNESNIDPTYAKSLQANCPSVGGDTNLSPFDVTTPNKFDNAYY 226
Query: 206 XXXXXXXXXXHSDQELFNGNSADFLVKRYAASISVFFKDFARGMIKMGNIKPLTGSAGQI 265
HSDQ+LFNG S D V Y+ + + F DF MIKMGN+ PLTG++GQI
Sbjct: 227 INLRNKKGLLHSDQQLFNGVSTDSQVTAYSNNAATFNTDFGNAMIKMGNLSPLTGTSGQI 286
Query: 266 RINCRKIN 273
R NCRK N
Sbjct: 287 RTNCRKTN 294
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2
pdb|1QO4|A Chain A, Arabidopsis Thaliana Peroxidase A2 At Room Temperature
Length = 306
Score = 219 bits (558), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 116/256 (45%), Positives = 155/256 (60%), Gaps = 10/256 (3%)
Query: 28 GCDGSVLLDDTANFIGEKTAVPNNNSARGFNVVDQIKANLEKACPRVVSCADILAIAARD 87
GCD S+LLDDT + EK A PN NSARGFNVVD IK LE ACP VVSC+D+LA+A+
Sbjct: 49 GCDASILLDDTGSIQSEKNAGPNVNSARGFNVVDNIKTALENACPGVVSCSDVLALASEA 108
Query: 88 SVVF-GGPSWKVRLGXXXXXXXXXXXXXXXIPPPTSNLSALISSFSAQGLSLKNMVALAG 146
SV GGPSW V LG IP P +LS + FSA GL+ ++VAL+G
Sbjct: 109 SVSLAGGPSWTVLLGRRDSLTANLAGANSSIPSPIESLSNITFKFSAVGLNTNDLVALSG 168
Query: 147 GHTVGKARCTSFRGHIYN-------DSNIDTSFARSLQQRCPRRGNDNVLANLDRQTPTC 199
HT G+ARC F ++N D ++++ +LQQ CP+ G+ + + NLD TP
Sbjct: 169 AHTFGRARCGVFNNRLFNFSGTGNPDPTLNSTLLSTLQQLCPQNGSASTITNLDLSTPDA 228
Query: 200 FDXXXXXXXXXXXXXXHSDQELFN--GNSADFLVKRYAASISVFFKDFARGMIKMGNIKP 257
FD SDQELF+ G+S +V +A++ ++FF+ FA+ MI MGNI P
Sbjct: 229 FDNNYFANLQSNDGLLQSDQELFSTTGSSTIAIVTSFASNQTLFFQAFAQSMINMGNISP 288
Query: 258 LTGSAGQIRINCRKIN 273
LTGS G+IR++C+K+N
Sbjct: 289 LTGSNGEIRLDCKKVN 304
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase.
pdb|4A5G|B Chain B, Raphanus Sativus Anionic Peroxidase
Length = 308
Score = 209 bits (531), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 115/256 (44%), Positives = 155/256 (60%), Gaps = 10/256 (3%)
Query: 28 GCDGSVLLDDTANFIGEKTAVPNNNSARGFNVVDQIKANLEKACPRVVSCADILAIAARD 87
GCD S+LLD++ + I EK A PN NSARGFNVVD IK LE ACP VVSC D+LA+A++
Sbjct: 50 GCDASILLDNSGSIISEKNAGPNANSARGFNVVDNIKTALENACPGVVSCTDVLALASQA 109
Query: 88 SVVF-GGPSWKVRLGXXXXXXXXXXXXXXXIPPPTSNLSALISSFSAQGLSLKNMVALAG 146
SV GGPSW V LG IP PT LS + S FSA GL+ ++VAL+G
Sbjct: 110 SVSLSGGPSWTVDLGRRDTLTANQAGANSSIPSPTQGLSNITSKFSAVGLNTNDLVALSG 169
Query: 147 GHTVGKARCTSFRGHIYN-------DSNIDTSFARSLQQRCPRRGNDNVLANLDRQTPTC 199
HT G+A C F ++N D ++T+ +LQ+ CP++G + NLD TP
Sbjct: 170 AHTFGRATCGVFSNRLFNFSGKGNPDPTLNTTLLSTLQELCPQKGRGSGSTNLDLSTPDA 229
Query: 200 FDXXXXXXXXXXXXXXHSDQELFN--GNSADFLVKRYAASISVFFKDFARGMIKMGNIKP 257
FD SDQELF+ G++ +V +A++ ++FF+ FA+ MI MGNI P
Sbjct: 230 FDNNYFTNLQSNNGLLQSDQELFSTTGSATIAIVTSFASNQTLFFQAFAQSMINMGNISP 289
Query: 258 LTGSAGQIRINCRKIN 273
LTGS+G+IR++C+K N
Sbjct: 290 LTGSSGEIRLDCKKTN 305
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
pdb|1GX2|B Chain B, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
Length = 309
Score = 201 bits (511), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 115/258 (44%), Positives = 150/258 (58%), Gaps = 12/258 (4%)
Query: 28 GCDGSVLLDDTANFIGEKTAVPNNNSARGFNVVDQIKANLEKACPRVVSCADILAIAARD 87
GCD S+LLD+T +F EK A N NSARGF V+D++KA +E ACPR VSCAD+L IAA+
Sbjct: 49 GCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQ 108
Query: 88 SVVF-GGPSWKVRLGXXXXXXXXXXXXXXXIPPPTSNLSALISSFSAQGLSL-KNMVALA 145
SV GGPSW+V LG +P P L L SF GL+ ++VAL+
Sbjct: 109 SVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALS 168
Query: 146 GGHTVGKARCTSFRGHIYNDSN-------IDTSFARSLQQRCPRRGNDNVLANLDRQTPT 198
GGHT GK +C S +YN SN ++T++ ++L+ CP GN + L + D +TPT
Sbjct: 169 GGHTFGKNQCRSIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPT 228
Query: 199 CFDXXXXXXXXXXXXXXHSDQELFNG-NSADF--LVKRYAASISVFFKDFARGMIKMGNI 255
FD SDQELF+ N+ D LV+ +A S FF F M +MGNI
Sbjct: 229 IFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNI 288
Query: 256 KPLTGSAGQIRINCRKIN 273
PLTG+ GQIR+NCR +N
Sbjct: 289 TPLTGTQGQIRLNCRVVN 306
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|3ATJ|B Chain B, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|1GWT|A Chain A, Recombinant Horseradish Peroxidase C1a Phe221met
Length = 309
Score = 199 bits (507), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 114/258 (44%), Positives = 150/258 (58%), Gaps = 12/258 (4%)
Query: 28 GCDGSVLLDDTANFIGEKTAVPNNNSARGFNVVDQIKANLEKACPRVVSCADILAIAARD 87
GCD S+LLD+T +F EK A N NSARGF V+D++KA +E ACPR VSCAD+L IAA+
Sbjct: 49 GCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQ 108
Query: 88 SVVF-GGPSWKVRLGXXXXXXXXXXXXXXXIPPPTSNLSALISSFSAQGLSL-KNMVALA 145
SV GGPSW+V LG +P P L L SF GL+ ++VAL+
Sbjct: 109 SVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALS 168
Query: 146 GGHTVGKARCTSFRGHIYNDSN-------IDTSFARSLQQRCPRRGNDNVLANLDRQTPT 198
GGHT GK +C +YN SN ++T++ ++L+ CP GN + L ++D +TPT
Sbjct: 169 GGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDMDLRTPT 228
Query: 199 CFDXXXXXXXXXXXXXXHSDQELFNG-NSADF--LVKRYAASISVFFKDFARGMIKMGNI 255
FD SDQELF+ N+ D LV+ +A S FF F M +MGNI
Sbjct: 229 IFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNI 288
Query: 256 KPLTGSAGQIRINCRKIN 273
PLTG+ GQIR+NCR +N
Sbjct: 289 TPLTGTQGQIRLNCRVVN 306
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate
pdb|1W4Y|A Chain A, Ferrous Horseradish Peroxidase C1a In Complex With Carbon
Monoxide
Length = 323
Score = 199 bits (506), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 114/258 (44%), Positives = 149/258 (57%), Gaps = 12/258 (4%)
Query: 28 GCDGSVLLDDTANFIGEKTAVPNNNSARGFNVVDQIKANLEKACPRVVSCADILAIAARD 87
GCD S+LLD+T +F EK A N NSARGF V+D++KA +E ACPR VSCAD+L IAA+
Sbjct: 48 GCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQ 107
Query: 88 SVVF-GGPSWKVRLGXXXXXXXXXXXXXXXIPPPTSNLSALISSFSAQGLSL-KNMVALA 145
SV GGPSW+V LG +P P L L SF GL+ ++VAL+
Sbjct: 108 SVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALS 167
Query: 146 GGHTVGKARCTSFRGHIYNDSN-------IDTSFARSLQQRCPRRGNDNVLANLDRQTPT 198
GGHT GK +C +YN SN ++T++ ++L+ CP GN + L + D +TPT
Sbjct: 168 GGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPT 227
Query: 199 CFDXXXXXXXXXXXXXXHSDQELFNG-NSADF--LVKRYAASISVFFKDFARGMIKMGNI 255
FD SDQELF+ N+ D LV+ +A S FF F M +MGNI
Sbjct: 228 IFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNI 287
Query: 256 KPLTGSAGQIRINCRKIN 273
PLTG+ GQIR+NCR +N
Sbjct: 288 TPLTGTQGQIRLNCRVVN 305
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant
Horseradish Peroxidase C (hrp C)
Length = 308
Score = 199 bits (505), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 114/258 (44%), Positives = 149/258 (57%), Gaps = 12/258 (4%)
Query: 28 GCDGSVLLDDTANFIGEKTAVPNNNSARGFNVVDQIKANLEKACPRVVSCADILAIAARD 87
GCD S+LLD+T +F EK A N NSARGF V+D++KA +E ACPR VSCAD+L IAA+
Sbjct: 48 GCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQ 107
Query: 88 SVVF-GGPSWKVRLGXXXXXXXXXXXXXXXIPPPTSNLSALISSFSAQGLSL-KNMVALA 145
SV GGPSW+V LG +P P L L SF GL+ ++VAL+
Sbjct: 108 SVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALS 167
Query: 146 GGHTVGKARCTSFRGHIYNDSN-------IDTSFARSLQQRCPRRGNDNVLANLDRQTPT 198
GGHT GK +C +YN SN ++T++ ++L+ CP GN + L + D +TPT
Sbjct: 168 GGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPT 227
Query: 199 CFDXXXXXXXXXXXXXXHSDQELFNG-NSADF--LVKRYAASISVFFKDFARGMIKMGNI 255
FD SDQELF+ N+ D LV+ +A S FF F M +MGNI
Sbjct: 228 IFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNI 287
Query: 256 KPLTGSAGQIRINCRKIN 273
PLTG+ GQIR+NCR +N
Sbjct: 288 TPLTGTQGQIRLNCRVVN 305
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln
Length = 309
Score = 199 bits (505), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 114/258 (44%), Positives = 149/258 (57%), Gaps = 12/258 (4%)
Query: 28 GCDGSVLLDDTANFIGEKTAVPNNNSARGFNVVDQIKANLEKACPRVVSCADILAIAARD 87
GCD S+LLD+T +F EK A N NSARGF V+D++KA +E ACPR VSCAD+L IAA+
Sbjct: 49 GCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQ 108
Query: 88 SVVF-GGPSWKVRLGXXXXXXXXXXXXXXXIPPPTSNLSALISSFSAQGLSL-KNMVALA 145
SV GGPSW+V LG +P P L L SF GL+ ++VAL+
Sbjct: 109 SVTLAGGPSWRVPLGRRDSLQAFLDLANANLPQPFFTLPQLKDSFRNVGLNRSSDLVALS 168
Query: 146 GGHTVGKARCTSFRGHIYNDSN-------IDTSFARSLQQRCPRRGNDNVLANLDRQTPT 198
GGHT GK +C +YN SN ++T++ ++L+ CP GN + L + D +TPT
Sbjct: 169 GGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPT 228
Query: 199 CFDXXXXXXXXXXXXXXHSDQELFNG-NSADF--LVKRYAASISVFFKDFARGMIKMGNI 255
FD SDQELF+ N+ D LV+ +A S FF F M +MGNI
Sbjct: 229 IFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNI 288
Query: 256 KPLTGSAGQIRINCRKIN 273
PLTG+ GQIR+NCR +N
Sbjct: 289 TPLTGTQGQIRLNCRVVN 306
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|B Chain B, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|C Chain C, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|D Chain D, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|E Chain E, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|F Chain F, Recombinant Horseradish Peroxidase C1a
pdb|1HCH|A Chain A, Structure Of Horseradish Peroxidase C1a Compound I
Length = 306
Score = 199 bits (505), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 114/258 (44%), Positives = 149/258 (57%), Gaps = 12/258 (4%)
Query: 28 GCDGSVLLDDTANFIGEKTAVPNNNSARGFNVVDQIKANLEKACPRVVSCADILAIAARD 87
GCD S+LLD+T +F EK A N NSARGF V+D++KA +E ACPR VSCAD+L IAA+
Sbjct: 48 GCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQ 107
Query: 88 SVVF-GGPSWKVRLGXXXXXXXXXXXXXXXIPPPTSNLSALISSFSAQGLSL-KNMVALA 145
SV GGPSW+V LG +P P L L SF GL+ ++VAL+
Sbjct: 108 SVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALS 167
Query: 146 GGHTVGKARCTSFRGHIYNDSN-------IDTSFARSLQQRCPRRGNDNVLANLDRQTPT 198
GGHT GK +C +YN SN ++T++ ++L+ CP GN + L + D +TPT
Sbjct: 168 GGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPT 227
Query: 199 CFDXXXXXXXXXXXXXXHSDQELFNG-NSADF--LVKRYAASISVFFKDFARGMIKMGNI 255
FD SDQELF+ N+ D LV+ +A S FF F M +MGNI
Sbjct: 228 IFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNI 287
Query: 256 KPLTGSAGQIRINCRKIN 273
PLTG+ GQIR+NCR +N
Sbjct: 288 TPLTGTQGQIRLNCRVVN 305
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
pdb|4ATJ|B Chain B, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
Length = 309
Score = 199 bits (505), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 114/258 (44%), Positives = 149/258 (57%), Gaps = 12/258 (4%)
Query: 28 GCDGSVLLDDTANFIGEKTAVPNNNSARGFNVVDQIKANLEKACPRVVSCADILAIAARD 87
GCD S+LLD+T +F EK A N NSARGF V+D++KA +E ACPR VSCAD+L IAA+
Sbjct: 49 GCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQ 108
Query: 88 SVVF-GGPSWKVRLGXXXXXXXXXXXXXXXIPPPTSNLSALISSFSAQGLSL-KNMVALA 145
SV GGPSW+V LG +P P L L SF GL+ ++VAL+
Sbjct: 109 SVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALS 168
Query: 146 GGHTVGKARCTSFRGHIYNDSN-------IDTSFARSLQQRCPRRGNDNVLANLDRQTPT 198
GGHT GK +C +YN SN ++T++ ++L+ CP GN + L + D +TPT
Sbjct: 169 GGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPT 228
Query: 199 CFDXXXXXXXXXXXXXXHSDQELFNG-NSADF--LVKRYAASISVFFKDFARGMIKMGNI 255
FD SDQELF+ N+ D LV+ +A S FF F M +MGNI
Sbjct: 229 IFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNI 288
Query: 256 KPLTGSAGQIRINCRKIN 273
PLTG+ GQIR+NCR +N
Sbjct: 289 TPLTGTQGQIRLNCRVVN 306
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic
Acid
pdb|7ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Complex With
Cyanide And Ferulic Acid
pdb|1H5D|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-11% Dose)
pdb|1H5E|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (11-22% Dose)
pdb|1H5F|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (22-33% Dose)
pdb|1H5G|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (33-44% Dose)
pdb|1H5I|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (56-67% Dose)
pdb|1H5J|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (67-78% Dose)
pdb|1H5K|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (78-89% Dose)
pdb|1H5M|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-100% Dose)
pdb|1H55|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Ii
pdb|1H57|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Iii
pdb|1H58|A Chain A, Structure Of Ferrous Horseradish Peroxidase C1a
pdb|1H5A|A Chain A, Structure Of Ferric Horseradish Peroxidase C1a In Complex
With Acetate
pdb|1H5C|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (100-200% Dose)
pdb|1H5H|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (44-56% Dose)
pdb|1H5L|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (89-100% Dose)
Length = 308
Score = 198 bits (504), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 114/258 (44%), Positives = 149/258 (57%), Gaps = 12/258 (4%)
Query: 28 GCDGSVLLDDTANFIGEKTAVPNNNSARGFNVVDQIKANLEKACPRVVSCADILAIAARD 87
GCD S+LLD+T +F EK A N NSARGF V+D++KA +E ACPR VSCAD+L IAA+
Sbjct: 48 GCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQ 107
Query: 88 SVVF-GGPSWKVRLGXXXXXXXXXXXXXXXIPPPTSNLSALISSFSAQGLSL-KNMVALA 145
SV GGPSW+V LG +P P L L SF GL+ ++VAL+
Sbjct: 108 SVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALS 167
Query: 146 GGHTVGKARCTSFRGHIYNDSN-------IDTSFARSLQQRCPRRGNDNVLANLDRQTPT 198
GGHT GK +C +YN SN ++T++ ++L+ CP GN + L + D +TPT
Sbjct: 168 GGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPT 227
Query: 199 CFDXXXXXXXXXXXXXXHSDQELFNG-NSADF--LVKRYAASISVFFKDFARGMIKMGNI 255
FD SDQELF+ N+ D LV+ +A S FF F M +MGNI
Sbjct: 228 IFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNI 287
Query: 256 KPLTGSAGQIRINCRKIN 273
PLTG+ GQIR+NCR +N
Sbjct: 288 TPLTGTQGQIRLNCRVVN 305
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
pdb|2ATJ|B Chain B, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
Length = 308
Score = 198 bits (504), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 114/258 (44%), Positives = 149/258 (57%), Gaps = 12/258 (4%)
Query: 28 GCDGSVLLDDTANFIGEKTAVPNNNSARGFNVVDQIKANLEKACPRVVSCADILAIAARD 87
GCD S+LLD+T +F EK A N NSARGF V+D++KA +E ACPR VSCAD+L IAA+
Sbjct: 49 GCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQ 108
Query: 88 SVVF-GGPSWKVRLGXXXXXXXXXXXXXXXIPPPTSNLSALISSFSAQGLSL-KNMVALA 145
SV GGPSW+V LG +P P L L SF GL+ ++VAL+
Sbjct: 109 SVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALS 168
Query: 146 GGHTVGKARCTSFRGHIYNDSN-------IDTSFARSLQQRCPRRGNDNVLANLDRQTPT 198
GGHT GK +C +YN SN ++T++ ++L+ CP GN + L + D +TPT
Sbjct: 169 GGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPT 228
Query: 199 CFDXXXXXXXXXXXXXXHSDQELFNG-NSADF--LVKRYAASISVFFKDFARGMIKMGNI 255
FD SDQELF+ N+ D LV+ +A S FF F M +MGNI
Sbjct: 229 IFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNI 288
Query: 256 KPLTGSAGQIRINCRKIN 273
PLTG+ GQIR+NCR +N
Sbjct: 289 TPLTGTQGQIRLNCRVVN 306
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly
Length = 309
Score = 198 bits (503), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 114/258 (44%), Positives = 149/258 (57%), Gaps = 12/258 (4%)
Query: 28 GCDGSVLLDDTANFIGEKTAVPNNNSARGFNVVDQIKANLEKACPRVVSCADILAIAARD 87
GCD S+LLD+T +F EK A N NSARGF V+D++KA +E ACPR VSCAD+L IAA+
Sbjct: 49 GCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQ 108
Query: 88 SVVF-GGPSWKVRLGXXXXXXXXXXXXXXXIPPPTSNLSALISSFSAQGLSL-KNMVALA 145
SV GGPSW+V LG +P P L L SF GL+ ++VAL+
Sbjct: 109 SVTLAGGPSWRVPLGRRDSLQAFLDLANANLPGPFFTLPQLKDSFRNVGLNRSSDLVALS 168
Query: 146 GGHTVGKARCTSFRGHIYNDSN-------IDTSFARSLQQRCPRRGNDNVLANLDRQTPT 198
GGHT GK +C +YN SN ++T++ ++L+ CP GN + L + D +TPT
Sbjct: 169 GGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPT 228
Query: 199 CFDXXXXXXXXXXXXXXHSDQELFNG-NSADF--LVKRYAASISVFFKDFARGMIKMGNI 255
FD SDQELF+ N+ D LV+ +A S FF F M +MGNI
Sbjct: 229 IFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNI 288
Query: 256 KPLTGSAGQIRINCRKIN 273
PLTG+ GQIR+NCR +N
Sbjct: 289 TPLTGTQGQIRLNCRVVN 306
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y
Length = 306
Score = 197 bits (502), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 114/258 (44%), Positives = 148/258 (57%), Gaps = 12/258 (4%)
Query: 28 GCDGSVLLDDTANFIGEKTAVPNNNSARGFNVVDQIKANLEKACPRVVSCADILAIAARD 87
GCD S+LLD+T +F EK A N NSARGF V+D++KA +E ACPR VSCAD+L IAA+
Sbjct: 48 GCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQ 107
Query: 88 SVVF-GGPSWKVRLGXXXXXXXXXXXXXXXIPPPTSNLSALISSFSAQGLSL-KNMVALA 145
SV GGPSW+V LG +P P L L SF GL+ ++VAL
Sbjct: 108 SVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALY 167
Query: 146 GGHTVGKARCTSFRGHIYNDSN-------IDTSFARSLQQRCPRRGNDNVLANLDRQTPT 198
GGHT GK +C +YN SN ++T++ ++L+ CP GN + L + D +TPT
Sbjct: 168 GGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPT 227
Query: 199 CFDXXXXXXXXXXXXXXHSDQELFNG-NSADF--LVKRYAASISVFFKDFARGMIKMGNI 255
FD SDQELF+ N+ D LV+ +A S FF F M +MGNI
Sbjct: 228 IFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNI 287
Query: 256 KPLTGSAGQIRINCRKIN 273
PLTG+ GQIR+NCR +N
Sbjct: 288 TPLTGTQGQIRLNCRVVN 305
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In
Complex With Ferulic Acid
Length = 308
Score = 197 bits (501), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 113/258 (43%), Positives = 149/258 (57%), Gaps = 12/258 (4%)
Query: 28 GCDGSVLLDDTANFIGEKTAVPNNNSARGFNVVDQIKANLEKACPRVVSCADILAIAARD 87
GCD S+LLD+T +F EK A N NSARGF V+D++KA +E ACPR VSCAD+L IAA+
Sbjct: 48 GCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQ 107
Query: 88 SVVF-GGPSWKVRLGXXXXXXXXXXXXXXXIPPPTSNLSALISSFSAQGLSL-KNMVALA 145
SV GGPSW+V LG +P P L L SF GL+ ++VAL+
Sbjct: 108 SVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALS 167
Query: 146 GGHTVGKARCTSFRGHIYNDSN-------IDTSFARSLQQRCPRRGNDNVLANLDRQTPT 198
GGH+ GK +C +YN SN ++T++ ++L+ CP GN + L + D +TPT
Sbjct: 168 GGHSFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPT 227
Query: 199 CFDXXXXXXXXXXXXXXHSDQELFNG-NSADF--LVKRYAASISVFFKDFARGMIKMGNI 255
FD SDQELF+ N+ D LV+ +A S FF F M +MGNI
Sbjct: 228 IFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNI 287
Query: 256 KPLTGSAGQIRINCRKIN 273
PLTG+ GQIR+NCR +N
Sbjct: 288 TPLTGTQGQIRLNCRVVN 305
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase
pdb|1FHF|B Chain B, The Structure Of Soybean Peroxidase
pdb|1FHF|C Chain C, The Structure Of Soybean Peroxidase
Length = 304
Score = 194 bits (493), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 110/257 (42%), Positives = 149/257 (57%), Gaps = 10/257 (3%)
Query: 27 QGCDGSVLLDDTANFIGEKTAVPNNNSARGFNVVDQIKANLEKACPRVVSCADILAIAAR 86
QGCDGSVLL++T E+ A+PN NS RG +VV+ IK +E +CP VSCADILAIAA
Sbjct: 47 QGCDGSVLLNNTDTIESEQDALPNINSIRGLDVVNDIKTAVENSCPDTVSCADILAIAAE 106
Query: 87 -DSVVFGGPSWKVRLGXXXXXXXXXXXXXXXIPPPTSNLSALISSFSAQGLSLKNMVALA 145
SV+ GGP W V LG +P P NL+ L +SF+ QGL+ ++V L+
Sbjct: 107 IASVLGGGPGWPVPLGRRDSLTANRTLANQNLPAPFFNLTQLKASFAVQGLNTLDLVTLS 166
Query: 146 GGHTVGKARCTSFRGHIYNDSN-------IDTSFARSLQQRCPRRGNDNVLANLDRQTPT 198
GGHT G+ARC++F +YN SN ++T++ L+ RCP+ + L NLD TP
Sbjct: 167 GGHTFGRARCSTFINRLYNFSNTGNPDPTLNTTYLEVLRARCPQNATGDNLTNLDLSTPD 226
Query: 199 CFDXXXXXXXXXXXXXXHSDQELFNGNSADF--LVKRYAASISVFFKDFARGMIKMGNIK 256
FD SDQELF+ AD +V ++++ + FF +F MIKMGNI
Sbjct: 227 QFDNRYYSNLLQLNGLLQSDQELFSTPGADTIPIVNSFSSNQNTFFSNFRVSMIKMGNIG 286
Query: 257 PLTGSAGQIRINCRKIN 273
LTG G+IR+ C +N
Sbjct: 287 VLTGDEGEIRLQCNFVN 303
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N
pdb|1QGJ|B Chain B, Arabidopsis Thaliana Peroxidase N
Length = 300
Score = 194 bits (492), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 114/258 (44%), Positives = 149/258 (57%), Gaps = 18/258 (6%)
Query: 28 GCDGSVLLDDTANFIGEKTAVPNNNSARGFNVVDQIKANLEKACPRVVSCADILAIAARD 87
GCD S+LLD + EK A+PN NSARGF V+D IKA +E ACP VVSCADIL +AARD
Sbjct: 48 GCDASLLLDGADS---EKLAIPNINSARGFEVIDTIKAAVENACPGVVSCADILTLAARD 104
Query: 88 SVVF-GGPSWKVRLGXXXXXXXXXXXXXXXIPPPTSNLSALISSFSAQGLSLKNMVALAG 146
SVV GGP W+V LG +P P L A+I+ F A L++ ++VAL+G
Sbjct: 105 SVVLSGGPGWRVALG-RKDGLVANQNSANNLPSPFEPLDAIIAKFVAVNLNITDVVALSG 163
Query: 147 GHTVGKARCTSFRGHIYN-------DSNIDTSFARSLQQRCPRRGNDNVLANLDRQTPTC 199
HT G+A+C F ++N D+ ++TS +LQ CP GN N+ A LDR T
Sbjct: 164 AHTFGQAKCAVFSNRLFNFTGAGNPDATLETSLLSNLQTVCPLGGNSNITAPLDRSTTDT 223
Query: 200 FDXXXXXXXXXXXXXXHSDQELFNG----NSADFLVKRYAASISVFFKDFARGMIKMGNI 255
FD SDQ LF+ N+ LV+ Y+ S S+FF+DF MI+MGNI
Sbjct: 224 FDNNYFKNLLEGKGLLSSDQILFSSDLAVNTTKKLVEAYSRSQSLFFRDFTCAMIRMGNI 283
Query: 256 KPLTGSAGQIRINCRKIN 273
G++G++R NCR IN
Sbjct: 284 S--NGASGEVRTNCRVIN 299
>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From
Royal Palm Tree
Length = 304
Score = 169 bits (429), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 98/257 (38%), Positives = 135/257 (52%), Gaps = 10/257 (3%)
Query: 27 QGCDGSVLLDDTANFIGEKTAVPNNNSARGFNVVDQIKANLEKACPRVVSCADILAIAAR 86
+GCD SVLLD TAN EK A+PNN S RGF V+ K+ +E ACP+ VSCADILA AAR
Sbjct: 47 RGCDASVLLDSTANNTAEKDAIPNNPSLRGFEVITAAKSAVEAACPQTVSCADILAFAAR 106
Query: 87 DSV-VFGGPSWKVRLGXXXXXXXXXXXXXXXIPPPTSNLSALISSFSAQGLSLKNMVALA 145
DS + G +++V G IP P N + LI+SF+ + L+ MV L+
Sbjct: 107 DSANLAGNITYQVPSGRRDGTVSLASEANAQIPSPLFNATQLINSFANKTLTADEMVTLS 166
Query: 146 GGHTVGKARCTSFRGHIYN-------DSNIDTSFARSLQQRCPRRGN--DNVLANLDRQT 196
G H++G A C+SF +YN D + S+A L+ CP + +LD T
Sbjct: 167 GAHSIGVAHCSSFTNRLYNFNSGSGIDPTLSPSYAALLRNTCPANSTRFTPITVSLDIIT 226
Query: 197 PTCFDXXXXXXXXXXXXXXHSDQELFNGNSADFLVKRYAASISVFFKDFARGMIKMGNIK 256
P+ D SDQ L + VK A +++ + FA+ M+KMG I+
Sbjct: 227 PSVLDNMYYTGVQLTLGLLTSDQALVTEANLSAAVKANAMNLTAWASKFAQAMVKMGQIE 286
Query: 257 PLTGSAGQIRINCRKIN 273
LTG+ G+IR NC +N
Sbjct: 287 VLTGTQGEIRTNCSVVN 303
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1
Length = 309
Score = 140 bits (353), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 93/249 (37%), Positives = 131/249 (52%), Gaps = 7/249 (2%)
Query: 27 QGCDGSVLLDDTANFIGEKTAVPNNN-SARGFNVVDQIKANLEKACP-RVVSCADILAIA 84
QGCD SVLLD +A GE+ A PN F V+ I+ LE+ C VVSC+DILA+A
Sbjct: 54 QGCDASVLLDGSATGPGEQQAPPNLTLRPSAFKAVNDIRDRLERECRGAVVSCSDILALA 113
Query: 85 ARDSVVF-GGPSWKVRLGXXXXXX-XXXXXXXXXIPPPTSNLSALISSFSAQGLSLKNMV 142
ARDSVV GGP ++V LG +P P+SN+ +L++ GL ++V
Sbjct: 114 ARDSVVVSGGPDYRVPLGRRDSRSFASTQDVLSDLPGPSSNVQSLLALLGRLGLDATDLV 173
Query: 143 ALAGGHTVGKARCTSFRGHIY--NDSNIDTSFARSLQQRCPRRGNDNVLANLDRQTPTCF 200
++GGHT+G A C+SF ++ D I +F L++ CP +G D LD +TP F
Sbjct: 174 TISGGHTIGLAHCSSFEDRLFPRPDPTISPTFLSRLKRTCPAKGTDRRTV-LDVRTPNVF 232
Query: 201 DXXXXXXXXXXXXXXHSDQELFNGNSADFLVKRYAASISVFFKDFARGMIKMGNIKPLTG 260
D SDQ+LF +V+R+A S FF+ F + KMG ++ T
Sbjct: 233 DNKYYIDLVNREGLFVSDQDLFTNAITRPIVERFAQSQQDFFEQFGVSIGKMGQMRVRTS 292
Query: 261 SAGQIRINC 269
G++R NC
Sbjct: 293 DQGEVRRNC 301
>pdb|1APX|A Chain A, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|B Chain B, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|C Chain C, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|D Chain D, Crystal Structure Of Recombinant Ascorbate Peroxidase
Length = 249
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 83/212 (39%), Gaps = 51/212 (24%)
Query: 56 GFNVVDQIKANLEKACPRVVSCADILAIAARDSV-VFGGPSWKVRLGXXXXXXXXXXXXX 114
G ++ ++ +++ P +VS AD +A +V + GGP G
Sbjct: 72 GLDIAVRLLEPIKEQFP-IVSYADFYQLAGVVAVEITGGPEVPFHPGREDKPE------- 123
Query: 115 XXIPPPTSNLS-------ALISSF-SAQGLSLKNMVALAGGHTVGKARC--TSFRGHIYN 164
PPP L L F A GLS +++VAL+GGHT+G A + F G +
Sbjct: 124 ---PPPEGRLPDATKGSDHLRDVFGKAMGLSDQDIVALSGGHTIGAAHKERSGFEGPWTS 180
Query: 165 DSNI-DTSFARSLQQRCPRRGNDNVLANLDRQTPTCFDXXXXXXXXXXXXXXHSDQELFN 223
+ I D S+ L G + L L SD+ L
Sbjct: 181 NPLIFDNSYFTELLT-----GEKDGLLQLP-----------------------SDKALLT 212
Query: 224 GNSADFLVKRYAASISVFFKDFARGMIKMGNI 255
+ LV++YAA VFF D+A +K+ +
Sbjct: 213 DSVFRPLVEKYAADEDVFFADYAEAHLKLSEL 244
>pdb|1IYN|A Chain A, Crystal Structure Of Chloroplastic Ascorbate Peroxidase
From Tobacco Plants And Structural Insights For Its
Instability
Length = 295
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 78/210 (37%), Gaps = 50/210 (23%)
Query: 75 VSCADILAIAARDSVV-FGGPSWKVRLGXXXXXXXXXXXXXXXIPP--PTSNLSALISSF 131
V+ AD+ +A+ ++ GGP ++ G +P P S L F
Sbjct: 87 VTYADLFQLASATAIEEAGGPKIPMKYGRVDVTEPEQCPEEGRLPDAGPPSPAQHLRDVF 146
Query: 132 SAQGLSLKNMVALAGGHTVGKARC---------TSFR--------GHIYNDS--NIDTSF 172
GL+ K +VAL+G HT+G++R T + G + D S+
Sbjct: 147 YRMGLNDKEIVALSGAHTLGRSRPDRSGWGKPETKYTKDGPGAPGGQSWTAQWLKFDNSY 206
Query: 173 ARSLQQRCPRRGNDNVLANLDRQTPTCFDXXXXXXXXXXXXXXHSDQELFNGNSADFLVK 232
+ +++ RR D ++ PT D LF S +
Sbjct: 207 FKDIKE---RRDEDLLV------LPT-------------------DAALFEDPSFKVYAE 238
Query: 233 RYAASISVFFKDFARGMIKMGNIKPLTGSA 262
+YAA FFKD+A K+ N+ G A
Sbjct: 239 KYAADPEAFFKDYAEAHAKLSNLGAKFGPA 268
>pdb|2CL4|X Chain X, Ascorbate Peroxidase R172a Mutant
Length = 261
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 78/212 (36%), Gaps = 51/212 (24%)
Query: 56 GFNVVDQIKANLEKACPRVVSCADILAIAARDSV-VFGGPSWKVRLGXXXXXXXXXXXXX 114
G ++ ++ L+ P ++S AD +A +V V GGP G
Sbjct: 84 GLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPE------- 135
Query: 115 XXIPPPTSNLS-------ALISSF-SAQGLSLKNMVALAGGHTVGKA--RCTSFRGHIYN 164
PPP L L F A GL+ +++VAL+GGHT+G A + F G +
Sbjct: 136 ---PPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKEASGFEGPWTS 192
Query: 165 DSNI-DTSFARSLQQRCPRRGNDNVLANLDRQTPTCFDXXXXXXXXXXXXXXHSDQELFN 223
+ I D S+ L G L L SD+ L +
Sbjct: 193 NPLIFDNSYFTELLS-----GEKEGLLQLP-----------------------SDKALLS 224
Query: 224 GNSADFLVKRYAASISVFFKDFARGMIKMGNI 255
LV +YAA FF D+A K+ +
Sbjct: 225 DPVFRPLVDKYAADEDAFFADYAEAHQKLSEL 256
>pdb|3RIW|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
pdb|3RIW|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
Length = 271
Score = 34.7 bits (78), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 53/126 (42%), Gaps = 5/126 (3%)
Query: 55 RGFNVVDQIKANLEKACPRVVSCADILAIAARDSVVF-GGPSWKVRLGXXXXXXXXXXXX 113
+G ++ + L+K P++ S AD+ +AA ++ + GGP+ G
Sbjct: 67 KGLDIPRKALETLKKKYPQI-SYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGP 125
Query: 114 XXXIPPPTSNLSALISSFSAQGLSLKNMVALAGGHTVGKARC--TSFRGHIYNDSN-IDT 170
+P + S + F G + + VAL G HT G+ + + G +D N D
Sbjct: 126 DGRLPDGSKTQSHVREVFRRLGFNDQETVALIGAHTCGETHIEFSGYHGPWTHDKNGFDN 185
Query: 171 SFARSL 176
SF L
Sbjct: 186 SFFTQL 191
>pdb|3ZCG|A Chain A, Ascorbate Peroxidase W41a-h42c Mutant
Length = 261
Score = 34.7 bits (78), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 78/212 (36%), Gaps = 51/212 (24%)
Query: 56 GFNVVDQIKANLEKACPRVVSCADILAIAARDSV-VFGGPSWKVRLGXXXXXXXXXXXXX 114
G ++ ++ L+ P ++S AD +A +V V GGP G
Sbjct: 84 GLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPE------- 135
Query: 115 XXIPPPTSNLS-------ALISSF-SAQGLSLKNMVALAGGHTVGKARC--TSFRGHIYN 164
PPP L L F A GL+ +++VAL+GGHT+G A + F G +
Sbjct: 136 ---PPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKERSGFEGPWTS 192
Query: 165 DSNI-DTSFARSLQQRCPRRGNDNVLANLDRQTPTCFDXXXXXXXXXXXXXXHSDQELFN 223
+ I D S+ L G L L SD+ L +
Sbjct: 193 NPLIFDNSYFTELLS-----GEKEGLLQLP-----------------------SDKALLS 224
Query: 224 GNSADFLVKRYAASISVFFKDFARGMIKMGNI 255
LV +YAA FF D+A K+ +
Sbjct: 225 DPVFRPLVDKYAADEDAFFADYAEAHQKLSEL 256
>pdb|2VCF|X Chain X, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase
Length = 264
Score = 34.7 bits (78), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 78/212 (36%), Gaps = 51/212 (24%)
Query: 56 GFNVVDQIKANLEKACPRVVSCADILAIAARDSV-VFGGPSWKVRLGXXXXXXXXXXXXX 114
G ++ ++ L+ P ++S AD +A +V V GGP G
Sbjct: 84 GLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPE------- 135
Query: 115 XXIPPPTSNLS-------ALISSF-SAQGLSLKNMVALAGGHTVGKARC--TSFRGHIYN 164
PPP L L F A GL+ +++VAL+GGHT+G A + F G +
Sbjct: 136 ---PPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKERSGFEGPWTS 192
Query: 165 DSNI-DTSFARSLQQRCPRRGNDNVLANLDRQTPTCFDXXXXXXXXXXXXXXHSDQELFN 223
+ I D S+ L G L L SD+ L +
Sbjct: 193 NPLIFDNSYFTELLS-----GEKEGLLQLP-----------------------SDKALLS 224
Query: 224 GNSADFLVKRYAASISVFFKDFARGMIKMGNI 255
LV +YAA FF D+A K+ +
Sbjct: 225 DPVFRPLVDKYAADEDAFFADYAEAHQKLSEL 256
>pdb|1OAF|A Chain A, Ascobate Peroxidase From Soybean Cytosol In Complex With
Ascorbate
pdb|1OAG|A Chain A, Ascorbate Peroxidase From Soybean Cytosol
pdb|1V0H|X Chain X, Ascobate Peroxidase From Soybean Cytosol In Complex With
Salicylhydroxamic Acid
pdb|2GHH|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHK|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
Length = 261
Score = 34.7 bits (78), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 78/212 (36%), Gaps = 51/212 (24%)
Query: 56 GFNVVDQIKANLEKACPRVVSCADILAIAARDSV-VFGGPSWKVRLGXXXXXXXXXXXXX 114
G ++ ++ L+ P ++S AD +A +V V GGP G
Sbjct: 84 GLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPE------- 135
Query: 115 XXIPPPTSNLS-------ALISSF-SAQGLSLKNMVALAGGHTVGKARC--TSFRGHIYN 164
PPP L L F A GL+ +++VAL+GGHT+G A + F G +
Sbjct: 136 ---PPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKERSGFEGPWTS 192
Query: 165 DSNI-DTSFARSLQQRCPRRGNDNVLANLDRQTPTCFDXXXXXXXXXXXXXXHSDQELFN 223
+ I D S+ L G L L SD+ L +
Sbjct: 193 NPLIFDNSYFTELLS-----GEKEGLLQLP-----------------------SDKALLS 224
Query: 224 GNSADFLVKRYAASISVFFKDFARGMIKMGNI 255
LV +YAA FF D+A K+ +
Sbjct: 225 DPVFRPLVDKYAADEDAFFADYAEAHQKLSEL 256
>pdb|2VCS|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant H42a
Length = 261
Score = 34.7 bits (78), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 78/212 (36%), Gaps = 51/212 (24%)
Query: 56 GFNVVDQIKANLEKACPRVVSCADILAIAARDSV-VFGGPSWKVRLGXXXXXXXXXXXXX 114
G ++ ++ L+ P ++S AD +A +V V GGP G
Sbjct: 84 GLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPE------- 135
Query: 115 XXIPPPTSNLS-------ALISSF-SAQGLSLKNMVALAGGHTVGKARC--TSFRGHIYN 164
PPP L L F A GL+ +++VAL+GGHT+G A + F G +
Sbjct: 136 ---PPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKERSGFEGPWTS 192
Query: 165 DSNI-DTSFARSLQQRCPRRGNDNVLANLDRQTPTCFDXXXXXXXXXXXXXXHSDQELFN 223
+ I D S+ L G L L SD+ L +
Sbjct: 193 NPLIFDNSYFTELLS-----GEKEGLLQLP-----------------------SDKALLS 224
Query: 224 GNSADFLVKRYAASISVFFKDFARGMIKMGNI 255
LV +YAA FF D+A K+ +
Sbjct: 225 DPVFRPLVDKYAADEDAFFADYAEAHQKLSEL 256
>pdb|4GED|A Chain A, Crystal Structure Of The Leishmania Major
Peroxidase-Cytochrome C Complex
Length = 268
Score = 34.7 bits (78), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 53/126 (42%), Gaps = 5/126 (3%)
Query: 55 RGFNVVDQIKANLEKACPRVVSCADILAIAARDSVVF-GGPSWKVRLGXXXXXXXXXXXX 113
+G ++ + L+K P++ S AD+ +AA ++ + GGP+ G
Sbjct: 66 KGLDIPRKALETLKKKYPQI-SYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGP 124
Query: 114 XXXIPPPTSNLSALISSFSAQGLSLKNMVALAGGHTVGKARC--TSFRGHIYNDSN-IDT 170
+P + S + F G + + VAL G HT G+ + + G +D N D
Sbjct: 125 DGRLPDGSKTQSHVREVFRRLGFNDQETVALIGAHTCGECHIEFSGYHGPWTHDKNGFDN 184
Query: 171 SFARSL 176
SF L
Sbjct: 185 SFFTQL 190
>pdb|2Y6A|A Chain A, Ascorbate Peroxidase R38a Mutant
Length = 249
Score = 34.3 bits (77), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 78/212 (36%), Gaps = 51/212 (24%)
Query: 56 GFNVVDQIKANLEKACPRVVSCADILAIAARDSV-VFGGPSWKVRLGXXXXXXXXXXXXX 114
G ++ ++ L+ P ++S AD +A +V V GGP G
Sbjct: 72 GLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPE------- 123
Query: 115 XXIPPPTSNLS-------ALISSF-SAQGLSLKNMVALAGGHTVGKARC--TSFRGHIYN 164
PPP L L F A GL+ +++VAL+GGHT+G A + F G +
Sbjct: 124 ---PPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKERSGFEGPWTS 180
Query: 165 DSNI-DTSFARSLQQRCPRRGNDNVLANLDRQTPTCFDXXXXXXXXXXXXXXHSDQELFN 223
+ I D S+ L G L L SD+ L +
Sbjct: 181 NPLIFDNSYFTELLS-----GEKEGLLQLP-----------------------SDKALLS 212
Query: 224 GNSADFLVKRYAASISVFFKDFARGMIKMGNI 255
LV +YAA FF D+A K+ +
Sbjct: 213 DPVFRPLVDKYAADEDAFFADYAEAHQKLSEL 244
>pdb|3RIV|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
pdb|3RIV|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Length = 271
Score = 34.3 bits (77), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 53/126 (42%), Gaps = 5/126 (3%)
Query: 55 RGFNVVDQIKANLEKACPRVVSCADILAIAARDSVVF-GGPSWKVRLGXXXXXXXXXXXX 113
+G ++ + L+K P++ S AD+ +AA ++ + GGP+ G
Sbjct: 67 KGLDIPRKALETLKKKYPQI-SYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGP 125
Query: 114 XXXIPPPTSNLSALISSFSAQGLSLKNMVALAGGHTVGKARC--TSFRGHIYNDSN-IDT 170
+P + S + F G + + VAL G HT G+ + + G +D N D
Sbjct: 126 DGRLPDGSKTQSHVREVFRRLGFNDQETVALIGAHTCGECHIEFSGYHGPWTHDKNGFDN 185
Query: 171 SFARSL 176
SF L
Sbjct: 186 SFFTQL 191
>pdb|2XIF|A Chain A, The Structure Of Ascorbate Peroxidase Compound Ii
pdb|2XIH|A Chain A, The Structure Of Ascorbate Peroxidase Compound Iii
pdb|2XI6|A Chain A, The Structure Of Ascorbate Peroxidase Compound I
pdb|2XJ6|A Chain A, The Structure Of Ferrous Ascorbate Peroxidase
Length = 249
Score = 34.3 bits (77), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 78/212 (36%), Gaps = 51/212 (24%)
Query: 56 GFNVVDQIKANLEKACPRVVSCADILAIAARDSV-VFGGPSWKVRLGXXXXXXXXXXXXX 114
G ++ ++ L+ P ++S AD +A +V V GGP G
Sbjct: 72 GLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPE------- 123
Query: 115 XXIPPPTSNLS-------ALISSF-SAQGLSLKNMVALAGGHTVGKARC--TSFRGHIYN 164
PPP L L F A GL+ +++VAL+GGHT+G A + F G +
Sbjct: 124 ---PPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKERSGFEGPWTS 180
Query: 165 DSNI-DTSFARSLQQRCPRRGNDNVLANLDRQTPTCFDXXXXXXXXXXXXXXHSDQELFN 223
+ I D S+ L G L L SD+ L +
Sbjct: 181 NPLIFDNSYFTELLS-----GEKEGLLQLP-----------------------SDKALLS 212
Query: 224 GNSADFLVKRYAASISVFFKDFARGMIKMGNI 255
LV +YAA FF D+A K+ +
Sbjct: 213 DPVFRPLVDKYAADEDAFFADYAEAHQKLSEL 244
>pdb|3ZCH|A Chain A, Ascorbate Peroxidase W41a-h42m Mutant
Length = 261
Score = 34.3 bits (77), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 78/212 (36%), Gaps = 51/212 (24%)
Query: 56 GFNVVDQIKANLEKACPRVVSCADILAIAARDSV-VFGGPSWKVRLGXXXXXXXXXXXXX 114
G ++ ++ L+ P ++S AD +A +V V GGP G
Sbjct: 84 GLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPE------- 135
Query: 115 XXIPPPTSNLS-------ALISSF-SAQGLSLKNMVALAGGHTVGKARC--TSFRGHIYN 164
PPP L L F A GL+ +++VAL+GGHT+G A + F G +
Sbjct: 136 ---PPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKERSGFEGPWTS 192
Query: 165 DSNI-DTSFARSLQQRCPRRGNDNVLANLDRQTPTCFDXXXXXXXXXXXXXXHSDQELFN 223
+ I D S+ L G L L SD+ L +
Sbjct: 193 NPLIFDNSYFTELLS-----GEKEGLLQLP-----------------------SDKALLS 224
Query: 224 GNSADFLVKRYAASISVFFKDFARGMIKMGNI 255
LV +YAA FF D+A K+ +
Sbjct: 225 DPVFRPLVDKYAADEDAFFADYAEAHQKLSEL 256
>pdb|2Y6B|A Chain A, Ascorbate Peroxidase R38k Mutant
Length = 249
Score = 34.3 bits (77), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 78/212 (36%), Gaps = 51/212 (24%)
Query: 56 GFNVVDQIKANLEKACPRVVSCADILAIAARDSV-VFGGPSWKVRLGXXXXXXXXXXXXX 114
G ++ ++ L+ P ++S AD +A +V V GGP G
Sbjct: 72 GLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPE------- 123
Query: 115 XXIPPPTSNLS-------ALISSF-SAQGLSLKNMVALAGGHTVGKARC--TSFRGHIYN 164
PPP L L F A GL+ +++VAL+GGHT+G A + F G +
Sbjct: 124 ---PPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKERSGFEGPWTS 180
Query: 165 DSNI-DTSFARSLQQRCPRRGNDNVLANLDRQTPTCFDXXXXXXXXXXXXXXHSDQELFN 223
+ I D S+ L G L L SD+ L +
Sbjct: 181 NPLIFDNSYFTELLS-----GEKEGLLQLP-----------------------SDKALLS 212
Query: 224 GNSADFLVKRYAASISVFFKDFARGMIKMGNI 255
LV +YAA FF D+A K+ +
Sbjct: 213 DPVFRPLVDKYAADEDAFFADYAEAHQKLSEL 244
>pdb|2GGN|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHC|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHD|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHE|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2VCN|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant W41a
pdb|2VNX|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a After Exposure To A High Dose Of X-Rays
pdb|2VNZ|X Chain X, Crystal Structure Of Dithinonite Reduced Soybean Ascorbate
Peroxidase Mutant W41a.
pdb|2VO2|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a Subjected To Low Dose X-Rays
pdb|2WD4|A Chain A, Ascorbate Peroxidase As A Heme Oxygenase: W41a Variant
Product With T-Butyl Peroxide
Length = 261
Score = 34.3 bits (77), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 78/212 (36%), Gaps = 51/212 (24%)
Query: 56 GFNVVDQIKANLEKACPRVVSCADILAIAARDSV-VFGGPSWKVRLGXXXXXXXXXXXXX 114
G ++ ++ L+ P ++S AD +A +V V GGP G
Sbjct: 84 GLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPE------- 135
Query: 115 XXIPPPTSNLS-------ALISSF-SAQGLSLKNMVALAGGHTVGKARC--TSFRGHIYN 164
PPP L L F A GL+ +++VAL+GGHT+G A + F G +
Sbjct: 136 ---PPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKERSGFEGPWTS 192
Query: 165 DSNI-DTSFARSLQQRCPRRGNDNVLANLDRQTPTCFDXXXXXXXXXXXXXXHSDQELFN 223
+ I D S+ L G L L SD+ L +
Sbjct: 193 NPLIFDNSYFTELLS-----GEKEGLLQLP-----------------------SDKALLS 224
Query: 224 GNSADFLVKRYAASISVFFKDFARGMIKMGNI 255
LV +YAA FF D+A K+ +
Sbjct: 225 DPVFRPLVDKYAADEDAFFADYAEAHQKLSEL 256
>pdb|3ZCY|A Chain A, Ascorbate Peroxidase W41a-h42y Mutant
Length = 249
Score = 34.3 bits (77), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 78/212 (36%), Gaps = 51/212 (24%)
Query: 56 GFNVVDQIKANLEKACPRVVSCADILAIAARDSV-VFGGPSWKVRLGXXXXXXXXXXXXX 114
G ++ ++ L+ P ++S AD +A +V V GGP G
Sbjct: 72 GLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPE------- 123
Query: 115 XXIPPPTSNLS-------ALISSF-SAQGLSLKNMVALAGGHTVGKARC--TSFRGHIYN 164
PPP L L F A GL+ +++VAL+GGHT+G A + F G +
Sbjct: 124 ---PPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKERSGFEGPWTS 180
Query: 165 DSNI-DTSFARSLQQRCPRRGNDNVLANLDRQTPTCFDXXXXXXXXXXXXXXHSDQELFN 223
+ I D S+ L G L L SD+ L +
Sbjct: 181 NPLIFDNSYFTELLS-----GEKEGLLQLP-----------------------SDKALLS 212
Query: 224 GNSADFLVKRYAASISVFFKDFARGMIKMGNI 255
LV +YAA FF D+A K+ +
Sbjct: 213 DPVFRPLVDKYAADEDAFFADYAEAHQKLSEL 244
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,806,273
Number of Sequences: 62578
Number of extensions: 222580
Number of successful extensions: 659
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 545
Number of HSP's gapped (non-prelim): 48
length of query: 273
length of database: 14,973,337
effective HSP length: 97
effective length of query: 176
effective length of database: 8,903,271
effective search space: 1566975696
effective search space used: 1566975696
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)