Query 024025
Match_columns 273
No_of_seqs 181 out of 1316
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 08:22:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024025.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024025hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03030 cationic peroxidase; 100.0 7.8E-95 1.7E-99 666.9 20.9 261 8-273 51-324 (324)
2 cd00693 secretory_peroxidase H 100.0 7.2E-90 1.6E-94 632.3 21.7 263 8-272 28-298 (298)
3 PF00141 peroxidase: Peroxidas 100.0 7.9E-70 1.7E-74 484.1 10.9 215 9-237 12-230 (230)
4 PLN02608 L-ascorbate peroxidas 100.0 1.5E-68 3.3E-73 486.1 19.5 218 9-270 27-257 (289)
5 cd00691 ascorbate_peroxidase A 100.0 3.1E-64 6.8E-69 453.0 17.7 214 9-258 26-251 (253)
6 cd00692 ligninase Ligninase an 100.0 5.1E-64 1.1E-68 463.9 19.6 220 9-273 34-287 (328)
7 PLN02364 L-ascorbate peroxidas 100.0 4E-63 8.6E-68 444.4 18.1 208 8-258 28-248 (250)
8 PLN02879 L-ascorbate peroxidas 100.0 7.2E-63 1.6E-67 442.1 17.4 208 8-258 29-248 (251)
9 cd00314 plant_peroxidase_like 100.0 8.3E-59 1.8E-63 419.0 17.0 214 6-254 11-255 (255)
10 cd00649 catalase_peroxidase_1 100.0 8.7E-59 1.9E-63 435.6 16.7 249 5-263 61-401 (409)
11 TIGR00198 cat_per_HPI catalase 100.0 7.3E-56 1.6E-60 439.4 16.7 246 5-260 71-405 (716)
12 PRK15061 catalase/hydroperoxid 100.0 4.6E-52 9.9E-57 410.4 16.7 247 5-261 73-412 (726)
13 cd08201 plant_peroxidase_like_ 100.0 8.5E-51 1.8E-55 363.9 13.4 207 9-254 38-264 (264)
14 cd08200 catalase_peroxidase_2 100.0 2.2E-40 4.8E-45 300.2 15.9 209 10-256 27-296 (297)
15 TIGR00198 cat_per_HPI catalase 100.0 3.5E-35 7.5E-40 292.1 14.4 207 10-257 445-710 (716)
16 PRK15061 catalase/hydroperoxid 100.0 8.9E-35 1.9E-39 287.8 16.2 209 11-257 453-722 (726)
17 COG0376 KatG Catalase (peroxid 100.0 2.7E-32 5.8E-37 259.6 14.1 242 5-256 86-416 (730)
18 COG0376 KatG Catalase (peroxid 99.5 4.8E-14 1E-18 135.5 11.4 202 13-256 465-725 (730)
19 PTZ00411 transaldolase-like pr 88.6 3.2 7E-05 39.2 9.3 149 74-246 160-327 (333)
20 PRK12346 transaldolase A; Prov 82.5 6.9 0.00015 36.8 8.2 88 74-178 149-253 (316)
21 PRK05269 transaldolase B; Prov 82.4 7.1 0.00015 36.7 8.2 145 74-244 150-312 (318)
22 TIGR00874 talAB transaldolase. 81.4 12 0.00025 35.3 9.3 157 55-244 136-312 (317)
23 PRK12309 transaldolase/EF-hand 80.8 15 0.00032 35.6 10.0 88 74-178 154-258 (391)
24 cd00957 Transaldolase_TalAB Tr 77.4 7.7 0.00017 36.4 6.8 75 74-149 148-239 (313)
25 PF11895 DUF3415: Domain of un 64.8 5.9 0.00013 29.7 2.3 19 240-258 2-20 (80)
26 cd00439 Transaldolase Transald 47.9 12 0.00027 33.8 2.0 76 55-139 127-210 (252)
27 TIGR00875 fsa_talC_mipB fructo 35.0 12 0.00026 33.1 -0.1 70 55-141 89-161 (213)
28 KOG0400 40S ribosomal protein 34.9 22 0.00047 29.3 1.3 33 122-154 31-64 (151)
29 PRK01362 putative translaldola 33.2 16 0.00034 32.4 0.3 71 55-142 89-162 (214)
30 cd00956 Transaldolase_FSA Tran 27.2 31 0.00067 30.3 1.1 37 91-137 121-157 (211)
31 cd07922 CarBa CarBa is the A s 25.1 48 0.001 24.9 1.6 34 221-257 13-57 (81)
32 PLN02161 beta-amylase 23.4 1E+02 0.0022 31.1 3.9 34 230-267 234-272 (531)
33 PF04225 OapA: Opacity-associa 21.7 55 0.0012 24.5 1.4 24 125-148 11-34 (85)
34 PF08782 c-SKI_SMAD_bind: c-SK 21.3 26 0.00057 27.2 -0.4 14 20-34 4-17 (96)
35 PLN00017 photosystem I reactio 20.4 46 0.001 25.2 0.7 20 234-253 38-57 (90)
No 1
>PLN03030 cationic peroxidase; Provisional
Probab=100.00 E-value=7.8e-95 Score=666.88 Aligned_cols=261 Identities=41% Similarity=0.672 Sum_probs=246.6
Q ss_pred hccchhHHHHHHhhccccCCCCCccccccCCCCCccccccCCCCCcchhHHHHHHHHHHHHhhCCCCccHHHHHHHhhhc
Q 024025 8 VCLFCVIISLKLFQLNDDNQGCDGSVLLDDTANFIGEKTAVPNNNSARGFNVVDQIKANLEKACPRVVSCADILAIAARD 87 (273)
Q Consensus 8 ~~~~~~~~llRl~FHDc~v~GcDgSill~~~~~~~~E~~~~~N~~~~~g~~~i~~iK~~le~~cp~~VScADiialAar~ 87 (273)
.+...+|.+|||+||||||+||||||||+++ ..||++++|. +++||++|+.||+++|++||++|||||||||||||
T Consensus 51 ~d~~~aa~llRL~FHDCfv~GCDaSvLl~~~---~~Ek~a~~N~-~l~Gf~~i~~iK~~~e~~CPg~VSCADilalAarD 126 (324)
T PLN03030 51 SNPAIAPGLLRMHFHDCFVRGCDASILIDGS---NTEKTALPNL-LLRGYDVIDDAKTQLEAACPGVVSCADILALAARD 126 (324)
T ss_pred hCcccchhhhhhhhhhheecCCceEEeeCCC---cccccCCCCc-CcchHHHHHHHHHHHHhhCCCcccHHHHHHHHhhc
Confidence 4578899999999999999999999999864 3699999997 88999999999999999999999999999999999
Q ss_pred ccc-cCCcceeecCCCCCCCccccccccCCCCCCCCCHHHHHHHHHHcCCCchhhhhhcccccccccccccccccccC--
Q 024025 88 SVV-FGGPSWKVRLGRRDSTTASRAAANTSIPPPTSNLSALISSFSAQGLSLKNMVALAGGHTVGKARCTSFRGHIYN-- 164 (273)
Q Consensus 88 Av~-~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~d~VaL~GaHtiG~~hc~~f~~Rl~~-- 164 (273)
||+ +|||.|+|++||||+++|.+.++. +||.|+.++++|++.|+++||+.+|||+||||||||++||.+|.+||||
T Consensus 127 aV~~~gGP~~~v~~GRrDg~~s~~~~~~-~LP~p~~~~~~l~~~F~~~Gl~~~DlVaLsGAHTiG~ahC~~f~~Rlynf~ 205 (324)
T PLN03030 127 SVVLTNGLTWPVPTGRRDGRVSLASDAS-NLPGFTDSIDVQKQKFAAKGLNTQDLVTLVGGHTIGTTACQFFRYRLYNFT 205 (324)
T ss_pred cccccCCCceeeeccccCCCCCCccccc-CCcCCCCCHHHHHHHHHHcCCCHHHheeeeeccccceeeeecccccccccc
Confidence 999 999999999999999999777664 8999999999999999999999999999999999999999999999995
Q ss_pred ------CCCCCHHHHHHhhccCCCCCCCCccccCCCCCCcccChHHHHHHHhcCCccccchhcccCcchHHHHHHHhhCh
Q 024025 165 ------DSNIDTSFARSLQQRCPRRGNDNVLANLDRQTPTCFDNLYYKNLLNKKGLLHSDQELFNGNSADFLVKRYAASI 238 (273)
Q Consensus 165 ------dp~~d~~~~~~L~~~Cp~~~~~~~~~~~D~~tp~~FDn~Yy~~l~~~~glL~SD~~L~~d~~t~~~V~~yA~d~ 238 (273)
||+||+.|+.+|++.||..+...+.+++|+.||.+|||+||+||++++|+|+|||+|++|++|+++|++||.|+
T Consensus 206 ~~~~~~Dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~nll~~rGlL~SDq~L~~d~~T~~~V~~~A~~~ 285 (324)
T PLN03030 206 TTGNGADPSIDASFVPQLQALCPQNGDGSRRIALDTGSSNRFDASFFSNLKNGRGILESDQKLWTDASTRTFVQRFLGVR 285 (324)
T ss_pred CCCCCCCCchhHHHHHHHhccCCCCCCCCccccCCCCCCcccccHHHHHHHhcCCCcCCchHhhcCccHHHHHHHHhccc
Confidence 89999999999999999633333468899999999999999999999999999999999999999999999875
Q ss_pred ----hHHHHHHHHHHHHhhcCCCCCCCCCccccccccCC
Q 024025 239 ----SVFFKDFARGMIKMGNIKPLTGSAGQIRINCRKIN 273 (273)
Q Consensus 239 ----~~F~~~Fa~am~Km~~lgv~tg~~GeIR~~C~~~N 273 (273)
+.|+++|++||+|||+|+|+||++|||||+|++||
T Consensus 286 ~~~~~~F~~~Fa~AmvKMg~i~VlTG~~GEIRk~C~~vN 324 (324)
T PLN03030 286 GLAGLNFNVEFGRSMVKMSNIGVKTGTNGEIRKVCSAIN 324 (324)
T ss_pred ccchhhhHHHHHHHHHHHccCCCCCCCCCceeccccccC
Confidence 59999999999999999999999999999999998
No 2
>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=7.2e-90 Score=632.33 Aligned_cols=263 Identities=51% Similarity=0.840 Sum_probs=250.8
Q ss_pred hccchhHHHHHHhhccccCCCCCccccccCCCCCccccccCCCCCcchhHHHHHHHHHHHHhhCCCCccHHHHHHHhhhc
Q 024025 8 VCLFCVIISLKLFQLNDDNQGCDGSVLLDDTANFIGEKTAVPNNNSARGFNVVDQIKANLEKACPRVVSCADILAIAARD 87 (273)
Q Consensus 8 ~~~~~~~~llRl~FHDc~v~GcDgSill~~~~~~~~E~~~~~N~~~~~g~~~i~~iK~~le~~cp~~VScADiialAar~ 87 (273)
.+.+.+|.+|||+||||||+||||||||+++.++.+|+++++|. +++||++|+.||+++|+.||++||||||||||+|+
T Consensus 28 ~~~~~a~~~lRl~FHDc~v~GcDaSill~~~~~~~~E~~~~~N~-~l~g~~~i~~iK~~~e~~cp~~VScADiialAar~ 106 (298)
T cd00693 28 ADPRLAAALLRLHFHDCFVRGCDASVLLDSTANNTSEKDAPPNL-SLRGFDVIDDIKAALEAACPGVVSCADILALAARD 106 (298)
T ss_pred hCCCcCchhhhhhhHhhhccCcceeEEecCCCCCchhccCCCCC-CcchhHHHHHHHHHHHhhCCCcccHHHHHHHhhhh
Confidence 35789999999999999999999999999887778999999998 78999999999999999999999999999999999
Q ss_pred ccc-cCCcceeecCCCCCCCccccccccCCCCCCCCCHHHHHHHHHHcCCCchhhhhhcccccccccccccccccccC--
Q 024025 88 SVV-FGGPSWKVRLGRRDSTTASRAAANTSIPPPTSNLSALISSFSAQGLSLKNMVALAGGHTVGKARCTSFRGHIYN-- 164 (273)
Q Consensus 88 Av~-~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~d~VaL~GaHtiG~~hc~~f~~Rl~~-- 164 (273)
||+ +|||.|+|++||+|+.+|.+..+ +.||+|+.+++++++.|+++||+++|||+|+||||||++||.+|.+|+|+
T Consensus 107 av~~~GGP~~~v~~GR~D~~~s~~~~~-~~lP~p~~~~~~l~~~F~~~G~~~~d~VaL~GaHTiG~~hc~~f~~Rl~~f~ 185 (298)
T cd00693 107 AVVLAGGPSYEVPLGRRDGRVSSANDV-GNLPSPFFSVSQLISLFASKGLTVTDLVALSGAHTIGRAHCSSFSDRLYNFS 185 (298)
T ss_pred ceeccCCCcccccCCCcCCcccCcccc-cCCCCcccCHHHHHHHHHHcCCCHHHheeecccceeeeeecccccccccCCC
Confidence 999 99999999999999998876655 78999999999999999999999999999999999999999999999985
Q ss_pred -----CCCCCHHHHHHhhccCCCCCCCCccccCCCCCCcccChHHHHHHHhcCCccccchhcccCcchHHHHHHHhhChh
Q 024025 165 -----DSNIDTSFARSLQQRCPRRGNDNVLANLDRQTPTCFDNLYYKNLLNKKGLLHSDQELFNGNSADFLVKRYAASIS 239 (273)
Q Consensus 165 -----dp~~d~~~~~~L~~~Cp~~~~~~~~~~~D~~tp~~FDn~Yy~~l~~~~glL~SD~~L~~d~~t~~~V~~yA~d~~ 239 (273)
||+||+.|+..|++.||..+.+.+.+++|+.||.+|||+||++|+.++|+|+|||+|+.|++|+++|++||.||+
T Consensus 186 g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~~l~~~~glL~SD~~L~~d~~t~~~V~~~A~d~~ 265 (298)
T cd00693 186 GTGDPDPTLDPAYAAQLRKKCPAGGDDDTLVPLDPGTPNTFDNSYYKNLLAGRGLLTSDQALLSDPRTRAIVNRYAANQD 265 (298)
T ss_pred CCCCCCCCccHHHHHHhcCCCCCCCCCCccccCCCCCCCccccHHHHHHHhcccCccCCHHhccCccHHHHHHHHhhCHH
Confidence 899999999999999997544556789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCccccccccC
Q 024025 240 VFFKDFARGMIKMGNIKPLTGSAGQIRINCRKI 272 (273)
Q Consensus 240 ~F~~~Fa~am~Km~~lgv~tg~~GeIR~~C~~~ 272 (273)
.|+++|++||+||++|||+||.+|||||+|++|
T Consensus 266 ~F~~~Fa~Am~Kl~~l~v~tg~~GeiR~~C~~~ 298 (298)
T cd00693 266 AFFRDFAAAMVKMGNIGVLTGSQGEIRKNCRVV 298 (298)
T ss_pred HHHHHHHHHHHHHhhcCCccCCCCccCCccccC
Confidence 999999999999999999999999999999975
No 3
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Most haem peroxidases follow the reaction scheme: Fe3+ + H2O2 --> [Fe4+=O]R' (Compound I) + H2O [Fe4+=O]R' + substrate --> [Fe4+=O]R (Compound II) + oxidised substrate [Fe4+=O]R + substrate --> Fe3+ + H2O + oxidised substrate In this mechanism, the enzyme reacts with one equivalent of H2O2 to give [Fe4+=O]R' (compound I). This is a two-electron oxidation/reduction reaction where H2O2 is reduced to water and the enzyme is oxidised. One oxidising equivalent resides on iron, giving the oxyferryl [] intermediate, while in many peroxidases the porphyrin (R) is oxidised to the porphyrin pi-cation radical (R'). Compound I then oxidises an organic substrate to give a substrate radical []. Haem peroxidases include two superfamilies: one found in bacteria, fungi, plants and the second found in animals. The first one can be viewed as consisting of 3 major classes []. Class I, the intracellular peroxidases, includes: yeast cytochrome c peroxidase (CCP), a soluble protein found in the mitochondrial electron transport chain, where it probably protects against toxic peroxides; ascorbate peroxidase (AP), the main enzyme responsible for hydrogen peroxide removal in chloroplasts and cytosol of higher plants; and bacterial catalase- peroxidases, exhibiting both peroxidase and catalase activities. It is thought that catalase-peroxidase provides protection to cells under oxidative stress []. Class II consists of secretory fungal peroxidases: ligninases, or lignin peroxidases (LiPs), and manganese-dependent peroxidases (MnPs). These are monomeric glycoproteins involved in the degradation of lignin. In MnP, Mn2+ serves as the reducing substrate []. Class II proteins contain four conserved disulphide bridges and two conserved calcium-binding sites. Class III consists of the secretory plant peroxidases, which have multiple tissue-specific functions: e.g., removal of hydrogen peroxide from chloroplasts and cytosol; oxidation of toxic compounds; biosynthesis of the cell wall; defence responses towards wounding; indole-3-acetic acid (IAA) catabolism; ethylene biosynthesis; and so on. Class III proteins are also monomeric glycoproteins, containing four conserved disulphide bridges and two calcium ions, although the placement of the disulphides differs from class II enzymes. The crystal structures of a number of these proteins show that they share the same architecture - two all-alpha domains between which the haem group is embedded. ; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1QPA_B 2DV2_A 2B2R_B 1MWV_B 2FXJ_A 2FXG_A 2B2O_B 1X7U_B 2B2Q_A 2FXH_A ....
Probab=100.00 E-value=7.9e-70 Score=484.08 Aligned_cols=215 Identities=49% Similarity=0.776 Sum_probs=194.7
Q ss_pred ccchhHHHHHHhhccccC-CCCCccccccCCCCCccccccCCCCCcchhHHHHHHHHHHHHhhCCCCccHHHHHHHhhhc
Q 024025 9 CLFCVIISLKLFQLNDDN-QGCDGSVLLDDTANFIGEKTAVPNNNSARGFNVVDQIKANLEKACPRVVSCADILAIAARD 87 (273)
Q Consensus 9 ~~~~~~~llRl~FHDc~v-~GcDgSill~~~~~~~~E~~~~~N~~~~~g~~~i~~iK~~le~~cp~~VScADiialAar~ 87 (273)
+..++|.||||+|||||+ +|||||||+. .+|+++++|.++.+++++|+.||+++|++||++|||||||+||+|+
T Consensus 12 ~~~~~~~~lRl~FHDc~~~~GcDgSil~~-----~~e~~~~~N~gl~~~~~~i~~ik~~~~~~cp~~VS~ADiialAa~~ 86 (230)
T PF00141_consen 12 DPTLAPGLLRLAFHDCFVYGGCDGSILLF-----SAEKDAPPNRGLRDGFDVIDPIKAKLEAACPGVVSCADIIALAARD 86 (230)
T ss_dssp HTTSHHHHHHHHHHHHTTHTSSSSGGGGS-----TTGGGSGGGTTHHHHHHHHHHHHHHHCHHSTTTS-HHHHHHHHHHH
T ss_pred CcCccHHHHHHHccccccccccccceecc-----ccccccccccCcceeeechhhHHhhhcccccCCCCHHHHHHHHhhh
Confidence 578999999999999999 9999999982 4799999998444499999999999999999999999999999999
Q ss_pred ccc-cCCcceeecCCCCCCCccccccccCCCCCCCCCHHHHHHHHHHcCCCchhhhhhcccccccccccccccccccC--
Q 024025 88 SVV-FGGPSWKVRLGRRDSTTASRAAANTSIPPPTSNLSALISSFSAQGLSLKNMVALAGGHTVGKARCTSFRGHIYN-- 164 (273)
Q Consensus 88 Av~-~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~d~VaL~GaHtiG~~hc~~f~~Rl~~-- 164 (273)
||+ +|||.|+|++||+|++++....+ .+||.|+.+++++++.|+++|||++|||||+||||||++||.+|. |||.
T Consensus 87 av~~~GGP~~~v~~GR~D~~~s~~~~~-~~lP~p~~~~~~l~~~F~~~Gls~~e~VaLsGaHTiG~~~c~~f~-rl~~~~ 164 (230)
T PF00141_consen 87 AVELCGGPRIPVPLGRRDGTVSSPSGA-SNLPSPTDSVDQLLAFFARKGLSAEEMVALSGAHTIGRAHCSSFS-RLYFPP 164 (230)
T ss_dssp HHHHTTGGHSHBEB-EBB-SSGGHHHH-HHSSTTTSHHHHHHHHHHHTT--HHHHHHHHGGGGSTEESGGCTG-GTSCSS
T ss_pred ccccccccccccccccccccccccccc-ccccccccccchhhhhhhccccchhhhcceecccccccceecccc-cccccc
Confidence 999 99999999999999999988766 689999999999999999999999999999999999999999999 9995
Q ss_pred CCCCCHHHHHHhhccCCCCCCCCccccCCCCCCcccChHHHHHHHhcCCccccchhcccCcchHHHHHHHhhC
Q 024025 165 DSNIDTSFARSLQQRCPRRGNDNVLANLDRQTPTCFDNLYYKNLLNKKGLLHSDQELFNGNSADFLVKRYAAS 237 (273)
Q Consensus 165 dp~~d~~~~~~L~~~Cp~~~~~~~~~~~D~~tp~~FDn~Yy~~l~~~~glL~SD~~L~~d~~t~~~V~~yA~d 237 (273)
||+||+.|+.+ .| ..+++. .+++| ||.+|||+||++|++++|+|+||++|+.|++|+.+|++||+|
T Consensus 165 dp~~d~~~~~~---~C-~~~~~~-~~~~d--tp~~fDN~Yy~~ll~~~gll~SD~~L~~d~~t~~~V~~yA~d 230 (230)
T PF00141_consen 165 DPTMDPGYAGQ---NC-NSGGDN-GVPLD--TPTVFDNSYYKNLLNGRGLLPSDQALLNDPETRPIVERYAQD 230 (230)
T ss_dssp GTTSTHHHHHH---SS-STSGCT-CEESS--STTS-SSHHHHHHHHTEEEEHHHHHHHHSTTHHHHHHHHHHT
T ss_pred cccccccccee---cc-CCCccc-ccccc--CCCcchhHHHHHHhcCCCcCHHHHHHhcCHHHHHHHHHHhcC
Confidence 89999999988 99 433333 77888 999999999999999999999999999999999999999986
No 4
>PLN02608 L-ascorbate peroxidase
Probab=100.00 E-value=1.5e-68 Score=486.15 Aligned_cols=218 Identities=28% Similarity=0.420 Sum_probs=198.7
Q ss_pred ccchhHHHHHHhhcccc-------CCCCCccccccCCCCCccccccCCCCCcchhHHHHHHHHHHHHhhCCCCccHHHHH
Q 024025 9 CLFCVIISLKLFQLNDD-------NQGCDGSVLLDDTANFIGEKTAVPNNNSARGFNVVDQIKANLEKACPRVVSCADIL 81 (273)
Q Consensus 9 ~~~~~~~llRl~FHDc~-------v~GcDgSill~~~~~~~~E~~~~~N~~~~~g~~~i~~iK~~le~~cp~~VScADii 81 (273)
+..++|.+|||+||||+ ++||||||+++ +|+++++|.++.+||++|+.||+++ ++|||||||
T Consensus 27 d~~~a~~llRLaFHDc~t~d~~~~~gGcDgSIll~------~E~~~~~N~gL~~g~~vid~iK~~~-----~~VScADil 95 (289)
T PLN02608 27 SKNCAPIMLRLAWHDAGTYDAKTKTGGPNGSIRNE------EEYSHGANNGLKIAIDLCEPVKAKH-----PKITYADLY 95 (289)
T ss_pred CCCcHHHHHHHhhhhcCCcCCCCCCCCCCeeeecc------cccCCccccchHHHHHHHHHHHHHc-----CCcCHHHHH
Confidence 46899999999999999 89999999983 5999999984447999999999997 389999999
Q ss_pred HHhhhcccc-cCCcceeecCCCCCCCccccccccCCCCCCCCCHHHHHHHHHHcCCCchhhhhhcccccccccccccccc
Q 024025 82 AIAARDSVV-FGGPSWKVRLGRRDSTTASRAAANTSIPPPTSNLSALISSFSAQGLSLKNMVALAGGHTVGKARCTSFRG 160 (273)
Q Consensus 82 alAar~Av~-~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~d~VaL~GaHtiG~~hc~~f~~ 160 (273)
+||+|+||+ +|||.|+|++||+|++++. ++++||+|+.+++++++.|+++||+++|||+|+||||||++||.
T Consensus 96 alAardAV~~~GGP~~~v~~GR~D~~~s~---~~~~LP~p~~~~~~l~~~F~~~Gl~~~D~VaLsGAHTiG~ahc~---- 168 (289)
T PLN02608 96 QLAGVVAVEVTGGPTIDFVPGRKDSNACP---EEGRLPDAKKGAKHLRDVFYRMGLSDKDIVALSGGHTLGRAHPE---- 168 (289)
T ss_pred HHHHHHHHHhcCCCccCCCCCCCCCCcCC---ccCCCcCCCCCHHHHHHHHHHcCCCHHHHhhhcccccccccccc----
Confidence 999999999 9999999999999999885 45689999999999999999999999999999999999999995
Q ss_pred cc-cCCCCCCHHHHHHhhccCCCCCCCCccccCCCCCCcccChHHHHHHHhc--CCc--cccchhcccCcchHHHHHHHh
Q 024025 161 HI-YNDSNIDTSFARSLQQRCPRRGNDNVLANLDRQTPTCFDNLYYKNLLNK--KGL--LHSDQELFNGNSADFLVKRYA 235 (273)
Q Consensus 161 Rl-~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~D~~tp~~FDn~Yy~~l~~~--~gl--L~SD~~L~~d~~t~~~V~~yA 235 (273)
|+ |+ + +++ .||.+|||+||++++.+ +|+ |+||++|+.|++|+.+|+.||
T Consensus 169 r~g~~----------------------g---~~~-~Tp~~FDN~Yy~~ll~~~~~gll~L~SD~~L~~d~~T~~~V~~fA 222 (289)
T PLN02608 169 RSGFD----------------------G---PWT-KEPLKFDNSYFVELLKGESEGLLKLPTDKALLEDPEFRPYVELYA 222 (289)
T ss_pred CCCCC----------------------C---CCC-CCCCccChHHHHHHHcCCcCCccccccCHhhhcChhHHHHHHHHh
Confidence 33 11 1 122 69999999999999999 788 799999999999999999999
Q ss_pred hChhHHHHHHHHHHHHhhcCCCCCCCCCccccccc
Q 024025 236 ASISVFFKDFARGMIKMGNIKPLTGSAGQIRINCR 270 (273)
Q Consensus 236 ~d~~~F~~~Fa~am~Km~~lgv~tg~~GeIR~~C~ 270 (273)
.|++.|+++|++||+||++|||+||.+||+.+.-+
T Consensus 223 ~~~~~F~~~Fa~Am~Km~~lgvltg~~Ge~~~~~~ 257 (289)
T PLN02608 223 KDEDAFFRDYAESHKKLSELGFTPPSSAFKKKSTS 257 (289)
T ss_pred hCHHHHHHHHHHHHHHHHcCCCCCCCCCcccccCc
Confidence 99999999999999999999999999999988543
No 5
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases. Ascorbate peroxidases are a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Along with related catalase-peroxidases, ascorbate peroxidases belong to class I of the plant superfamily. Ascorbate peroxidases are found in the chloroplasts and/or cytosol of algae and plants, where they have been shown to control the concentration of lethal hydrogen peroxide molecules. The yeast cytochrome c peroxidase is a divergent member of the family; it forms a complex with cytochrome c to catalyze the reduction of hydrogen peroxide to water.
Probab=100.00 E-value=3.1e-64 Score=452.96 Aligned_cols=214 Identities=26% Similarity=0.388 Sum_probs=191.5
Q ss_pred ccchhHHHHHHhhccccCCCCCccccccC---CCCCccccccCCCCCcchhHHHHHHHHHHHHhhCCCCccHHHHHHHhh
Q 024025 9 CLFCVIISLKLFQLNDDNQGCDGSVLLDD---TANFIGEKTAVPNNNSARGFNVVDQIKANLEKACPRVVSCADILAIAA 85 (273)
Q Consensus 9 ~~~~~~~llRl~FHDc~v~GcDgSill~~---~~~~~~E~~~~~N~~~~~g~~~i~~iK~~le~~cp~~VScADiialAa 85 (273)
+..++|.+|||+|||||+ ||+|+++++ +..+.+|+++++|.++.+||++|+.||+++ | +||||||||||+
T Consensus 26 ~~~~~~~llRl~FHDc~~--~d~s~~~~G~d~s~~~~~E~~~~~N~~L~~~~~~i~~iK~~~----~-~VScADilalAa 98 (253)
T cd00691 26 DKNCAPILVRLAWHDSGT--YDKETKTGGSNGTIRFDPELNHGANAGLDIARKLLEPIKKKY----P-DISYADLWQLAG 98 (253)
T ss_pred cCCcHHHHHHHHHHHHhc--cccccCCCCCCccccchhhcCCccccchHHHHHHHHHHHHHc----C-CCCHHHHHHHHH
Confidence 578899999999999994 777777643 223457999999985559999999999986 3 899999999999
Q ss_pred hcccc-cCCcceeecCCCCCCCccccccccCCCCCCCCCHHHHHHHHHHcCCCchhhhhhcccccccccccccccccccC
Q 024025 86 RDSVV-FGGPSWKVRLGRRDSTTASRAAANTSIPPPTSNLSALISSFSAQGLSLKNMVALAGGHTVGKARCTSFRGHIYN 164 (273)
Q Consensus 86 r~Av~-~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~d~VaL~GaHtiG~~hc~~f~~Rl~~ 164 (273)
|+||+ +|||.|+|++||+|+.++....++.+||.|+.+++++++.|+++||+++|||+|+||||||++||..+ . +
T Consensus 99 r~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~d~VaLsGaHTiG~a~c~~~--~-~- 174 (253)
T cd00691 99 VVAIEEMGGPKIPFRPGRVDASDPEECPPEGRLPDASKGADHLRDVFYRMGFNDQEIVALSGAHTLGRCHKERS--G-Y- 174 (253)
T ss_pred HHHHHHcCCCccCcccCCCCCCcccccCcccCCCCCCCCHHHHHHHHHhcCCCHHHHHHhcccceeecccccCC--C-C-
Confidence 99999 99999999999999999987777888999999999999999999999999999999999999999531 0 0
Q ss_pred CCCCCHHHHHHhhccCCCCCCCCccccCCCCCCcccChHHHHHHHhcCC--------ccccchhcccCcchHHHHHHHhh
Q 024025 165 DSNIDTSFARSLQQRCPRRGNDNVLANLDRQTPTCFDNLYYKNLLNKKG--------LLHSDQELFNGNSADFLVKRYAA 236 (273)
Q Consensus 165 dp~~d~~~~~~L~~~Cp~~~~~~~~~~~D~~tp~~FDn~Yy~~l~~~~g--------lL~SD~~L~~d~~t~~~V~~yA~ 236 (273)
.+.+ ..||.+|||+||++|+.++| +|+||++|+.|++|+.+|+.||.
T Consensus 175 ---------------------~g~~----~~tp~~FDn~Yy~~ll~~~g~~~~~~~~~L~sD~~L~~d~~t~~~v~~~a~ 229 (253)
T cd00691 175 ---------------------DGPW----TKNPLKFDNSYFKELLEEDWKLPTPGLLMLPTDKALLEDPKFRPYVELYAK 229 (253)
T ss_pred ---------------------CCCC----CCCCCcccHHHHHHHhcCCCccCcCcceechhhHHHHcCccHHHHHHHHhh
Confidence 0111 16999999999999999999 99999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHhhcCCCC
Q 024025 237 SISVFFKDFARGMIKMGNIKPL 258 (273)
Q Consensus 237 d~~~F~~~Fa~am~Km~~lgv~ 258 (273)
|+++|+++|++||+||+++||.
T Consensus 230 ~~~~F~~~Fa~Am~Km~~l~v~ 251 (253)
T cd00691 230 DQDAFFKDYAEAHKKLSELGVP 251 (253)
T ss_pred CHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999996
No 6
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases. Ligninases and related extracellular fungal peroxidases belong to class II of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class II peroxidases are fungal glycoproteins that have been implicated in the oxidative breakdown of lignin, the main cell wall component of woody plants. They contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=5.1e-64 Score=463.95 Aligned_cols=220 Identities=24% Similarity=0.341 Sum_probs=197.1
Q ss_pred ccchhHHHHHHhhccccC------------CCCCccccccCCCCCccccccCCCCCcchhHHHHHHHHHHHHhhCCCCcc
Q 024025 9 CLFCVIISLKLFQLNDDN------------QGCDGSVLLDDTANFIGEKTAVPNNNSARGFNVVDQIKANLEKACPRVVS 76 (273)
Q Consensus 9 ~~~~~~~llRl~FHDc~v------------~GcDgSill~~~~~~~~E~~~~~N~~~~~g~~~i~~iK~~le~~cp~~VS 76 (273)
|...|+++|||+||||++ +||||||||+.+ .|+++++|. +++ ++|+.||..+|+.| ||
T Consensus 34 c~~~a~~~lRL~FHD~~~~~~~~~~~~~~~gGcDgSill~~~----~E~~~~~N~-gL~--~vvd~lk~~~e~~c---VS 103 (328)
T cd00692 34 CGEEAHESLRLTFHDAIGFSPALAAGQFGGGGADGSIVLFDD----IETAFHANI-GLD--EIVEALRPFHQKHN---VS 103 (328)
T ss_pred CchHHHHhHHHhhhcccccccccccCCCCCCCcCceeecCCc----ccccCCCCC-CHH--HHHHHHHHHHHhcC---cC
Confidence 556677899999999996 899999999753 699999997 555 89999999999998 99
Q ss_pred HHHHHHHhhhcccc--cCCcceeecCCCCCCCccccccccCCCCCCCCCHHHHHHHHHHcCCCchhhhhhcccccccccc
Q 024025 77 CADILAIAARDSVV--FGGPSWKVRLGRRDSTTASRAAANTSIPPPTSNLSALISSFSAQGLSLKNMVALAGGHTVGKAR 154 (273)
Q Consensus 77 cADiialAar~Av~--~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~d~VaL~GaHtiG~~h 154 (273)
||||||||+|+||+ +|||.|+|++||+|++++. +++.||.|+.++++|++.|+++||+++|||+|+||||||++|
T Consensus 104 cADiialAa~~AV~~~~GGP~i~v~~GR~D~~~s~---~~g~LP~p~~sv~~l~~~F~~~Gf~~~E~VaLsGAHTiG~a~ 180 (328)
T cd00692 104 MADFIQFAGAVAVSNCPGAPRLEFYAGRKDATQPA---PDGLVPEPFDSVDKILARFADAGFSPDELVALLAAHSVAAQD 180 (328)
T ss_pred HHHHHHHHHHHHHHhcCCCCcccccCCCCCCCCCC---cccCCCCCCCCHHHHHHHHHHcCCCHHHHhhhcccccccccC
Confidence 99999999999999 5999999999999999885 456899999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCCHHHHHHhhccCCCCCCCCccccCCCCCCcccChHHHHHHH-hcCC-------------------c
Q 024025 155 CTSFRGHIYNDSNIDTSFARSLQQRCPRRGNDNVLANLDRQTPTCFDNLYYKNLL-NKKG-------------------L 214 (273)
Q Consensus 155 c~~f~~Rl~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~D~~tp~~FDn~Yy~~l~-~~~g-------------------l 214 (273)
.. ||+++ .+++| .||.+|||+||+|++ .+++ +
T Consensus 181 ~~--------Dps~~-------------------g~p~D-~TP~~FDn~Yf~~ll~~~~~~~g~~~~~~e~~~~~~g~~~ 232 (328)
T cd00692 181 FV--------DPSIA-------------------GTPFD-STPGVFDTQFFIETLLKGTAFPGSGGNQGEVESPLPGEFR 232 (328)
T ss_pred CC--------CCCCC-------------------CCCCC-CCcchhcHHHHHHHHHcCCCCCCccccccccccCcccccc
Confidence 31 66654 15688 699999999999988 4555 4
Q ss_pred cccchhcccCcchHHHHHHHhhChhHHHHHHHHHHHHhhcCCCCCCCCCccccccccCC
Q 024025 215 LHSDQELFNGNSADFLVKRYAASISVFFKDFARGMIKMGNIKPLTGSAGQIRINCRKIN 273 (273)
Q Consensus 215 L~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~am~Km~~lgv~tg~~GeIR~~C~~~N 273 (273)
|+||++|+.|++|+.+|++||.||++|+++|++||+||++|||. ...+.+|+.|+
T Consensus 233 L~SD~~L~~D~~T~~~v~~fa~dq~~f~~~Fa~Am~KLs~lgv~----~~~l~dcs~v~ 287 (328)
T cd00692 233 LQSDFLLARDPRTACEWQSFVNNQAKMNAAFAAAMLKLSLLGQD----NISLTDCSDVI 287 (328)
T ss_pred ccchHHHhcCCcHHHHHHHHhcCHHHHHHHHHHHHHHHHcCCCC----cchhccCcccC
Confidence 99999999999999999999999999999999999999999986 33788999875
No 7
>PLN02364 L-ascorbate peroxidase 1
Probab=100.00 E-value=4e-63 Score=444.40 Aligned_cols=208 Identities=28% Similarity=0.433 Sum_probs=186.1
Q ss_pred hccchhHHHHHHhhc-----cccCC--CCCccccccCCCCCccccccCCCCCcchhHHHHHHHHHHHHhhCCCCccHHHH
Q 024025 8 VCLFCVIISLKLFQL-----NDDNQ--GCDGSVLLDDTANFIGEKTAVPNNNSARGFNVVDQIKANLEKACPRVVSCADI 80 (273)
Q Consensus 8 ~~~~~~~~llRl~FH-----Dc~v~--GcDgSill~~~~~~~~E~~~~~N~~~~~g~~~i~~iK~~le~~cp~~VScADi 80 (273)
.+..++|.||||+|| ||+++ ||||||.+ .+|+++++|.++.+||++|+.||+++ ++||||||
T Consensus 28 ~~~~~a~~~lRl~FHd~~t~dc~~~~GG~dgSi~~------~~E~~~~~N~gl~~~~~~i~~ik~~~-----~~VScADi 96 (250)
T PLN02364 28 AEKNCAPIMVRLAWHSAGTFDCQSRTGGPFGTMRF------DAEQAHGANSGIHIALRLLDPIREQF-----PTISFADF 96 (250)
T ss_pred hCCCcHHHHHHHHHccccCcCcCCCCCCCCccccc------cccccCCCccCHHHHHHHHHHHHHHc-----CCcCHHHH
Confidence 457899999999999 88776 99999954 46999999985559999999999998 48999999
Q ss_pred HHHhhhcccc-cCCcceeecCCCCCCCccccccccCCCCCCCCCHHHHHHHHHH-cCCCchhhhhhcccccccccccccc
Q 024025 81 LAIAARDSVV-FGGPSWKVRLGRRDSTTASRAAANTSIPPPTSNLSALISSFSA-QGLSLKNMVALAGGHTVGKARCTSF 158 (273)
Q Consensus 81 ialAar~Av~-~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~-~Gl~~~d~VaL~GaHtiG~~hc~~f 158 (273)
|+||||+||+ +|||.|+|++||+|++++. +++.||.|+.++++|++.|++ +|||++|||+|+||||||++||.
T Consensus 97 lalAardAV~~~GGP~~~v~~GR~D~~~s~---~~~~lP~p~~~~~~l~~~F~~~~Gl~~~d~VaLsGaHTiG~~hc~-- 171 (250)
T PLN02364 97 HQLAGVVAVEVTGGPDIPFHPGREDKPQPP---PEGRLPDATKGCDHLRDVFAKQMGLSDKDIVALSGAHTLGRCHKD-- 171 (250)
T ss_pred HHHHHHHHHHhcCCCeeCCCCCCCCccccc---ccCCCCCCCcCHHHHHHHHHHhcCCCHHHheeeecceeeccccCC--
Confidence 9999999999 9999999999999999886 356899999999999999997 59999999999999999999993
Q ss_pred cccccCCCCCCHHHHHHhhccCCCCCCCCccccCCCCCCcccChHHHHHHHhc--CCccc--cchhcccCcchHHHHHHH
Q 024025 159 RGHIYNDSNIDTSFARSLQQRCPRRGNDNVLANLDRQTPTCFDNLYYKNLLNK--KGLLH--SDQELFNGNSADFLVKRY 234 (273)
Q Consensus 159 ~~Rl~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~D~~tp~~FDn~Yy~~l~~~--~glL~--SD~~L~~d~~t~~~V~~y 234 (273)
|+. ..+ +++ .||.+|||+||++|+.+ +|+|. ||++|+.|++|+.+|+.|
T Consensus 172 --r~~---------------------~~g---~~~-~tp~~fDn~Yy~~ll~~~~~gll~l~sD~~L~~d~~T~~~v~~~ 224 (250)
T PLN02364 172 --RSG---------------------FEG---AWT-SNPLIFDNSYFKELLSGEKEGLLQLVSDKALLDDPVFRPLVEKY 224 (250)
T ss_pred --CCC---------------------CCC---CCC-CCCCccchHHHHHHhcCCcCCCccccchHHHccCchHHHHHHHH
Confidence 320 011 122 69999999999999999 89865 999999999999999999
Q ss_pred hhChhHHHHHHHHHHHHhhcCCCC
Q 024025 235 AASISVFFKDFARGMIKMGNIKPL 258 (273)
Q Consensus 235 A~d~~~F~~~Fa~am~Km~~lgv~ 258 (273)
|.|++.|+++|++||+||++||+-
T Consensus 225 a~~~~~F~~~Fa~Am~Km~~lg~~ 248 (250)
T PLN02364 225 AADEDAFFADYAEAHMKLSELGFA 248 (250)
T ss_pred hhCHHHHHHHHHHHHHHHHccCCC
Confidence 999999999999999999999974
No 8
>PLN02879 L-ascorbate peroxidase
Probab=100.00 E-value=7.2e-63 Score=442.08 Aligned_cols=208 Identities=28% Similarity=0.438 Sum_probs=188.0
Q ss_pred hccchhHHHHHHhhcccc-------CCCCCccccccCCCCCccccccCCCCCcchhHHHHHHHHHHHHhhCCCCccHHHH
Q 024025 8 VCLFCVIISLKLFQLNDD-------NQGCDGSVLLDDTANFIGEKTAVPNNNSARGFNVVDQIKANLEKACPRVVSCADI 80 (273)
Q Consensus 8 ~~~~~~~~llRl~FHDc~-------v~GcDgSill~~~~~~~~E~~~~~N~~~~~g~~~i~~iK~~le~~cp~~VScADi 80 (273)
.+.+++|.+|||+||||. +|||||||++ ..|+++++|.++..++++|+.||+++ ++||||||
T Consensus 29 ~~~~~~p~~vRla~Hdagt~~~~~~~GG~~Gsirf------~~E~~~~~N~gL~~~~~~i~~iK~~~-----~~VScADi 97 (251)
T PLN02879 29 AEKHCAPIVLRLAWHSAGTFDVKTKTGGPFGTIRH------PQELAHDANNGLDIAVRLLDPIKELF-----PILSYADF 97 (251)
T ss_pred hCCCchhHhHHHHHhhhccccCCCCCCCCCeeecC------hhhccCCCcCChHHHHHHHHHHHHHc-----CCcCHHHH
Confidence 357899999999999997 4899999975 35999999985545999999999998 48999999
Q ss_pred HHHhhhcccc-cCCcceeecCCCCCCCccccccccCCCCCCCCCHHHHHHHHHHcCCCchhhhhhccccccccccccccc
Q 024025 81 LAIAARDSVV-FGGPSWKVRLGRRDSTTASRAAANTSIPPPTSNLSALISSFSAQGLSLKNMVALAGGHTVGKARCTSFR 159 (273)
Q Consensus 81 ialAar~Av~-~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~d~VaL~GaHtiG~~hc~~f~ 159 (273)
|+||+|+||+ +|||.|+|++||+|+.++. ++++||+|+.+++++++.|+++||+++|||||+||||||++||.
T Consensus 98 lalAa~~AV~~~GGP~~~~~~GR~D~~~~~---~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVALsGaHTiG~ah~~--- 171 (251)
T PLN02879 98 YQLAGVVAVEITGGPEIPFHPGRLDKVEPP---PEGRLPQATKGVDHLRDVFGRMGLNDKDIVALSGGHTLGRCHKE--- 171 (251)
T ss_pred HHHHHHHHHHhcCCCccCCCCCCCCCCCCC---cccCCCCCCCCHHHHHHHHHHcCCCHHHHeeeeccccccccccc---
Confidence 9999999999 9999999999999999874 46789999999999999999999999999999999999999995
Q ss_pred ccccCCCCCCHHHHHHhhccCCCCCCCCccccCCCCCCcccChHHHHHHHhc--CCc--cccchhcccCcchHHHHHHHh
Q 024025 160 GHIYNDSNIDTSFARSLQQRCPRRGNDNVLANLDRQTPTCFDNLYYKNLLNK--KGL--LHSDQELFNGNSADFLVKRYA 235 (273)
Q Consensus 160 ~Rl~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~D~~tp~~FDn~Yy~~l~~~--~gl--L~SD~~L~~d~~t~~~V~~yA 235 (273)
|. +..+ .+| .||.+|||+||++|+.+ +|+ |+||++|+.|++|+++|++||
T Consensus 172 -r~---------------------g~~g---~~d-~tp~~FDN~Yy~~ll~~~~~gll~L~SD~aL~~D~~t~~~V~~~A 225 (251)
T PLN02879 172 -RS---------------------GFEG---AWT-PNPLIFDNSYFKEILSGEKEGLLQLPTDKALLDDPLFLPFVEKYA 225 (251)
T ss_pred -cc---------------------cCCC---CCC-CCccceeHHHHHHHHcCCcCCCccchhhHHHhcCCcHHHHHHHHh
Confidence 21 1111 234 69999999999999999 888 679999999999999999999
Q ss_pred hChhHHHHHHHHHHHHhhcCCCC
Q 024025 236 ASISVFFKDFARGMIKMGNIKPL 258 (273)
Q Consensus 236 ~d~~~F~~~Fa~am~Km~~lgv~ 258 (273)
.||+.|+++|++||+||++||+.
T Consensus 226 ~d~~~F~~~Fa~Am~KL~~lg~~ 248 (251)
T PLN02879 226 ADEDAFFEDYTEAHLKLSELGFA 248 (251)
T ss_pred hCHHHHHHHHHHHHHHHHccCCC
Confidence 99999999999999999999985
No 9
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised
Probab=100.00 E-value=8.3e-59 Score=419.00 Aligned_cols=214 Identities=34% Similarity=0.456 Sum_probs=195.7
Q ss_pred hhhccchhHHHHHHhhccccCC--------CCCccccccCCCCCccccccCCCCCcchhHHHHHHHHHHHHhhCCCCccH
Q 024025 6 WVVCLFCVIISLKLFQLNDDNQ--------GCDGSVLLDDTANFIGEKTAVPNNNSARGFNVVDQIKANLEKACPRVVSC 77 (273)
Q Consensus 6 ~~~~~~~~~~llRl~FHDc~v~--------GcDgSill~~~~~~~~E~~~~~N~~~~~g~~~i~~iK~~le~~cp~~VSc 77 (273)
|..+..++|.+|||+||||++. ||||||+++. |+++++|.++.+++++|+.||.++|+ |++|||
T Consensus 11 ~~~~~~~~~~llRl~fHD~~~~~~~~~~~gg~dgsi~~~~------e~~~~~N~~l~~~~~~l~~ik~~~~~--~~~vS~ 82 (255)
T cd00314 11 ITQAGALAGSLLRLAFHDAGTYDIADGKGGGADGSIRFEP------ELDRPENGGLDKALRALEPIKSAYDG--GNPVSR 82 (255)
T ss_pred HHhCcchHHHHHHHHHHHhccccccCCCCCCCCceEeccc------cccCcccccHHHHHHHHHHHHHHcCC--CCcccH
Confidence 4557789999999999999986 9999999963 99999998667999999999999998 899999
Q ss_pred HHHHHHhhhcccc-c--CCcceeecCCCCCCCccc--cccccCCCCCCCCCHHHHHHHHHHcCCCchhhhhhc-ccccc-
Q 024025 78 ADILAIAARDSVV-F--GGPSWKVRLGRRDSTTAS--RAAANTSIPPPTSNLSALISSFSAQGLSLKNMVALA-GGHTV- 150 (273)
Q Consensus 78 ADiialAar~Av~-~--GGP~~~v~~GR~D~~~s~--~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~d~VaL~-GaHti- 150 (273)
||||+||+++||+ + |||.|+|++||+|+..+. ...|.+.+|.|+.+++++++.|+++||+++|||||+ |||||
T Consensus 83 ADlialAa~~Av~~~~~ggp~~~~~~GR~D~~~~~~~~p~P~~~~p~~~~~~~~~~~~F~~~Gl~~~e~VAL~~GaHti~ 162 (255)
T cd00314 83 ADLIALAGAVAVESTFGGGPLIPFRFGRLDATEPDLGVPDPEGLLPNETSSATELRDKFKRMGLSPSELVALSAGAHTLG 162 (255)
T ss_pred HHHHHHHHHHHHHHhccCCCeeeeCCCCCCCchhhccCCCCCCCCCCccchHHHHHHHHHHcCCCHHHHHhhccCCeecc
Confidence 9999999999999 7 999999999999999774 334567789999999999999999999999999999 99999
Q ss_pred cccccccccccccCCCCCCHHHHHHhhccCCCCCCCCccccCCCCCCcccChHHHHHHHhcC----------------Cc
Q 024025 151 GKARCTSFRGHIYNDSNIDTSFARSLQQRCPRRGNDNVLANLDRQTPTCFDNLYYKNLLNKK----------------GL 214 (273)
Q Consensus 151 G~~hc~~f~~Rl~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~D~~tp~~FDn~Yy~~l~~~~----------------gl 214 (273)
|++||..+..|+ | .++..||.+|||+||++++.++ ++
T Consensus 163 G~~~~~~~~~~~-----------------~----------~~~~~tp~~fDN~yy~~l~~~~~~~~~~~~~~~~~~~~~~ 215 (255)
T cd00314 163 GKNHGDLLNYEG-----------------S----------GLWTSTPFTFDNAYFKNLLDMNWEWRVGSPDPDGVKGPGL 215 (255)
T ss_pred CcccCCCCCccc-----------------C----------CCCCCCCCccchHHHHHHhcCCcccccCCccCCCcccCCC
Confidence 999998877653 2 2334799999999999999998 89
Q ss_pred cccchhcccCcchHHHHHHHhhChhHHHHHHHHHHHHhhc
Q 024025 215 LHSDQELFNGNSADFLVKRYAASISVFFKDFARGMIKMGN 254 (273)
Q Consensus 215 L~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~am~Km~~ 254 (273)
|+||+.|+.|++|+.+|++||.|+++|+++|++||+||++
T Consensus 216 l~sD~~L~~d~~t~~~v~~ya~~~~~f~~~Fa~a~~Km~~ 255 (255)
T cd00314 216 LPSDYALLSDSETRALVERYASDQEKFFEDFAKAWIKMVN 255 (255)
T ss_pred chhhHHHhcCHhHHHHHHHHHhCHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999985
No 10
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms, where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to class I of the plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C
Probab=100.00 E-value=8.7e-59 Score=435.63 Aligned_cols=249 Identities=20% Similarity=0.281 Sum_probs=221.7
Q ss_pred ehhhc-cchhHHHHHHhhccccC-------CCCC-ccccccCCCCCccccccCCCCCcchhHHHHHHHHHHHHhhCCCCc
Q 024025 5 FWVVC-LFCVIISLKLFQLNDDN-------QGCD-GSVLLDDTANFIGEKTAVPNNNSARGFNVVDQIKANLEKACPRVV 75 (273)
Q Consensus 5 ~~~~~-~~~~~~llRl~FHDc~v-------~GcD-gSill~~~~~~~~E~~~~~N~~~~~g~~~i~~iK~~le~~cp~~V 75 (273)
+||++ .+|.|.+|||+||++.+ ||++ |+|.+ .+|++++.|.++.+++.+++.||+++. ..|
T Consensus 61 ~wp~D~g~~gp~lvRlAWh~AgTy~~~d~~GG~ngg~iRf------~pe~~~~~N~gL~~a~~~L~pik~k~~----~~i 130 (409)
T cd00649 61 WWPADYGHYGPLFIRMAWHSAGTYRIADGRGGAGTGQQRF------APLNSWPDNVNLDKARRLLWPIKQKYG----NKI 130 (409)
T ss_pred cCccccCCcccceeeeeccccccccCcCCCCCCCCCcccc------ccccCcHhhhhHHHHHHHHHHHHHHcC----CCc
Confidence 79998 99999999999999985 8996 78876 469999999987789999999999875 479
Q ss_pred cHHHHHHHhhhcccc-cCCcceeecCCCCCCCccccc-----------------------------------cccC--CC
Q 024025 76 SCADILAIAARDSVV-FGGPSWKVRLGRRDSTTASRA-----------------------------------AANT--SI 117 (273)
Q Consensus 76 ScADiialAar~Av~-~GGP~~~v~~GR~D~~~s~~~-----------------------------------~~~~--~l 117 (273)
|+||+|+||+.+||+ +|||.|++..||.|...+... .+++ .|
T Consensus 131 S~ADL~~LaG~~AiE~~Ggp~ipf~~GR~Da~~~~~~v~wg~~~~~~~~~~~~~~~~l~~pl~a~~mgliyv~Pegp~gL 210 (409)
T cd00649 131 SWADLMILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGPEKEWLADKRYSGDRDLENPLAAVQMGLIYVNPEGPDGN 210 (409)
T ss_pred cHHHHHHHHHHHHHHHcCCCcccccCCCCccCCCccccccCcchhcccccccccchhhccchhhhhccccccCCCCCCCC
Confidence 999999999999999 999999999999999764320 1223 79
Q ss_pred CCCCCCHHHHHHHHHHcCCCchhhhhh-cccccccccccccccccccCCCCCCHHHHHHhh--ccCCCCCCC-CccccCC
Q 024025 118 PPPTSNLSALISSFSAQGLSLKNMVAL-AGGHTVGKARCTSFRGHIYNDSNIDTSFARSLQ--QRCPRRGND-NVLANLD 193 (273)
Q Consensus 118 P~p~~~~~~l~~~F~~~Gl~~~d~VaL-~GaHtiG~~hc~~f~~Rl~~dp~~d~~~~~~L~--~~Cp~~~~~-~~~~~~D 193 (273)
|+|..++.+|++.|++||||++||||| +||||||++||..|.+||..||.+++.|++.|+ ..||...+. ...+.+|
T Consensus 211 PdP~~sa~~LR~~F~RmGlnd~E~VAL~sGAHTiGkaHc~~~~~rlg~dP~~~~~~~~gLgw~~~Cp~g~g~~t~~sglD 290 (409)
T cd00649 211 PDPLAAAKDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASHVGPEPEAAPIEQQGLGWKNSYGTGKGKDTITSGLE 290 (409)
T ss_pred CCCccCHHHHHHHHHHcCCCHHHHeeeccCCcceeecCcccccccCCCCCCcCHHHHHhhcccccCCCCCCCCCccccCC
Confidence 999999999999999999999999999 599999999999999999999999999999995 899974332 2345677
Q ss_pred ---CCCCcccChHHHHHHHh------------------------------------cCCccccchhcccCcchHHHHHHH
Q 024025 194 ---RQTPTCFDNLYYKNLLN------------------------------------KKGLLHSDQELFNGNSADFLVKRY 234 (273)
Q Consensus 194 ---~~tp~~FDn~Yy~~l~~------------------------------------~~glL~SD~~L~~d~~t~~~V~~y 234 (273)
..||.+|||+||++|+. ++++|+||++|+.|++++++|++|
T Consensus 291 G~Wt~tP~~FDN~YF~nLl~~eW~~~~~p~g~~Q~~~~~~~~~~~~~d~~~~~~~~~~gmL~SD~aL~~Dp~tr~iV~~y 370 (409)
T cd00649 291 GAWTPTPTKWDNNYLKNLFGYEWELTKSPAGAWQWVPKNAAGENTVPDAHDPSKKHAPMMLTTDLALRFDPEYEKISRRF 370 (409)
T ss_pred CCCCCCcchhhHHHHHHHHhccceeccCCCCcccccccCccccccCCCccccccccCcccchhhHhhhcCccHHHHHHHH
Confidence 47999999999999998 558999999999999999999999
Q ss_pred hhChhHHHHHHHHHHHHh--hcCCCCCCCCC
Q 024025 235 AASISVFFKDFARGMIKM--GNIKPLTGSAG 263 (273)
Q Consensus 235 A~d~~~F~~~Fa~am~Km--~~lgv~tg~~G 263 (273)
|.|++.||++|++||+|| +.+|+++-..|
T Consensus 371 A~d~~~Ff~dFA~A~~KL~hrdmgp~~~~~g 401 (409)
T cd00649 371 LENPDEFADAFAKAWFKLTHRDMGPKSRYLG 401 (409)
T ss_pred hcCHHHHHHHHHHHHHHHccccCCchhhhcC
Confidence 999999999999999999 68999986555
No 11
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=7.3e-56 Score=439.44 Aligned_cols=246 Identities=21% Similarity=0.254 Sum_probs=216.3
Q ss_pred ehhhc-cchhHHHHHHhhccccC-------CCC-CccccccCCCCCccccccCCCCCcchhHHHHHHHHHHHHhhCCCCc
Q 024025 5 FWVVC-LFCVIISLKLFQLNDDN-------QGC-DGSVLLDDTANFIGEKTAVPNNNSARGFNVVDQIKANLEKACPRVV 75 (273)
Q Consensus 5 ~~~~~-~~~~~~llRl~FHDc~v-------~Gc-DgSill~~~~~~~~E~~~~~N~~~~~g~~~i~~iK~~le~~cp~~V 75 (273)
+||++ .+|.|.+|||+||++.+ ||| .|+|.+ .+|++++.|.++.+++.+++.||++ ||+.|
T Consensus 71 wwpad~g~ygp~~vRlAWHsAgTYr~~d~rGGa~gg~iRf------~P~~sw~~N~~Ldka~~lL~pIk~k----yp~~V 140 (716)
T TIGR00198 71 WWPADWGHYGGLFIRMAWHAAGTYRIADGRGGAATGNQRF------APLNSWPDNVNLDKARRLLWPIKKK----YGNKL 140 (716)
T ss_pred cCccccCCcceeeeeeeccccccccCCCCCCCCCCCceec------ccccCchhhhhHHHHHHHHHHHHHH----CCCce
Confidence 79998 89999999999999985 788 588865 4699999999777889999988886 78899
Q ss_pred cHHHHHHHhhhcccc-cCCcceeecCCCCCCCcccc--------------------------c----------cccCCCC
Q 024025 76 SCADILAIAARDSVV-FGGPSWKVRLGRRDSTTASR--------------------------A----------AANTSIP 118 (273)
Q Consensus 76 ScADiialAar~Av~-~GGP~~~v~~GR~D~~~s~~--------------------------~----------~~~~~lP 118 (273)
||||||+||+++||+ +|||.|+|.+||+|+..+.. . +....+|
T Consensus 141 S~ADLivLAG~vAVE~~Ggp~i~f~~GR~D~~~~~~d~~~g~e~~~l~~~~~~~~~l~~p~a~~~~Gliyvnpeg~~~lP 220 (716)
T TIGR00198 141 SWADLIILAGTVAYESMGLKVFGFAGGREDIWEPDKDIYWGAEKEWLTSSREDRESLENPLAATEMGLIYVNPEGPDGHP 220 (716)
T ss_pred eHHHHHHHHHHHHHHHhCCCccCCCCCCCCCCCcccccccccccchhhccccccccccccchhhhccccccCcccccCCC
Confidence 999999999999999 99999999999999953320 0 1122699
Q ss_pred CCCCCHHHHHHHHHHcCCCchhhhhhc-ccccccccccccccccccCCCCCCHHHHHHhhccCCCCC---CCCccccCC-
Q 024025 119 PPTSNLSALISSFSAQGLSLKNMVALA-GGHTVGKARCTSFRGHIYNDSNIDTSFARSLQQRCPRRG---NDNVLANLD- 193 (273)
Q Consensus 119 ~p~~~~~~l~~~F~~~Gl~~~d~VaL~-GaHtiG~~hc~~f~~Rl~~dp~~d~~~~~~L~~~Cp~~~---~~~~~~~~D- 193 (273)
.|..++++|++.|++||||++|||||+ ||||||++||.+|.+||..||++++.|++.|+..||... .+...+.+|
T Consensus 221 dP~~sa~~Lrd~F~rmGLnd~EmVALiaGaHTiGkaHc~s~~~rlg~dP~~~~~~~~gLg~~c~~~~g~g~dt~~sglDG 300 (716)
T TIGR00198 221 DPLCTAQDIRTTFARMGMNDEETVALIAGGHTVGKCHGAGPAELIGPDPEGAPIEEQGLGWHNQYGKGVGRDTMTSGLEV 300 (716)
T ss_pred CCCCCHHHHHHHHHHcCCChHHHeeeecCceeccccCCCcccccCCCCCCcCHHHHHHhcccCCCCCCCCCCcccccCCC
Confidence 999999999999999999999999995 999999999999999998899999999999999998532 122245666
Q ss_pred --CCCCcccChHHHHHHHhc----------------------------------CCccccchhcccCcchHHHHHHHhhC
Q 024025 194 --RQTPTCFDNLYYKNLLNK----------------------------------KGLLHSDQELFNGNSADFLVKRYAAS 237 (273)
Q Consensus 194 --~~tp~~FDn~Yy~~l~~~----------------------------------~glL~SD~~L~~d~~t~~~V~~yA~d 237 (273)
..||.+|||+||+||+.+ .++|+||++|..|++++++|+.||.|
T Consensus 301 ~wT~TP~~FDN~YF~nLl~~~w~~~~s~~g~~q~~~~~~~~~~p~~~~~~~~~~~~mL~SDlaL~~Dp~~r~iVe~yA~d 380 (716)
T TIGR00198 301 AWTTTPTQWDNGYFYMLFNYEWELKKSPAGAWQWEAVDAPEIIPDVEDPNKKHNPIMLDADLALRFDPEFRKISRRFLRE 380 (716)
T ss_pred CCCCCCCccchHHHHHHhcCCceeeecCCCCceeeecccccccccccccccccccCccchhHHhccCccHHHHHHHHhcC
Confidence 479999999999999975 68999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhh--cCCCCCC
Q 024025 238 ISVFFKDFARGMIKMG--NIKPLTG 260 (273)
Q Consensus 238 ~~~F~~~Fa~am~Km~--~lgv~tg 260 (273)
++.|+++|++||+||+ .+|++.-
T Consensus 381 ~~~F~~dFA~Aw~KL~~~d~gp~~~ 405 (716)
T TIGR00198 381 PDYFAEAFAKAWFKLTHRDMGPKSR 405 (716)
T ss_pred HHHHHHHHHHHHHHHcccccCchhh
Confidence 9999999999999999 5776543
No 12
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=4.6e-52 Score=410.36 Aligned_cols=247 Identities=20% Similarity=0.282 Sum_probs=216.4
Q ss_pred ehhhc-cchhHHHHHHhhccccC-------CCCC-ccccccCCCCCccccccCCCCCcchhHHHHHHHHHHHHhhCCCCc
Q 024025 5 FWVVC-LFCVIISLKLFQLNDDN-------QGCD-GSVLLDDTANFIGEKTAVPNNNSARGFNVVDQIKANLEKACPRVV 75 (273)
Q Consensus 5 ~~~~~-~~~~~~llRl~FHDc~v-------~GcD-gSill~~~~~~~~E~~~~~N~~~~~g~~~i~~iK~~le~~cp~~V 75 (273)
+||++ .+|.|.+|||+||++.+ |||+ |+|.+ .+|++++.|.++.+++.+++.||+++. ..|
T Consensus 73 wwpaD~g~ygp~~vRlAWH~AgTYr~~d~rGGangg~iRf------~pe~~w~~N~gL~ka~~~L~pik~ky~----~~i 142 (726)
T PRK15061 73 WWPADYGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRF------APLNSWPDNVNLDKARRLLWPIKQKYG----NKI 142 (726)
T ss_pred cccccCCCccceeeeeeecccccccCcCCCCCCCCCcccC------cccccchhhhhHHHHHHHHHHHHHHhC----CCc
Confidence 79998 89999999999999985 8986 78865 469999999988889999999999974 479
Q ss_pred cHHHHHHHhhhcccc-cCCcceeecCCCCCCCccccc--------------------------------------cccCC
Q 024025 76 SCADILAIAARDSVV-FGGPSWKVRLGRRDSTTASRA--------------------------------------AANTS 116 (273)
Q Consensus 76 ScADiialAar~Av~-~GGP~~~v~~GR~D~~~s~~~--------------------------------------~~~~~ 116 (273)
|+||+|+||+.+||+ +|||.|++..||.|...+... +.+..
T Consensus 143 S~ADLi~LaG~vAiE~~Ggp~i~f~~GR~D~~~~~~~v~wg~e~~~l~~~~r~~~~~~l~~pl~a~~mgliyvnpegp~g 222 (726)
T PRK15061 143 SWADLMILAGNVALESMGFKTFGFAGGREDVWEPEEDVYWGPEKEWLGGDERYSGERDLENPLAAVQMGLIYVNPEGPNG 222 (726)
T ss_pred cHHHHHHHHHHHHHHHcCCCccCcCCCCCCCcCCccccccCccccccccccccccccccccchhhhhccceecCCCCCCC
Confidence 999999999999999 999999999999998654321 01123
Q ss_pred CCCCCCCHHHHHHHHHHcCCCchhhhhhc-ccccccccccccccccccCCCCCCHHHHHHhh--ccCCCCCC-CCccccC
Q 024025 117 IPPPTSNLSALISSFSAQGLSLKNMVALA-GGHTVGKARCTSFRGHIYNDSNIDTSFARSLQ--QRCPRRGN-DNVLANL 192 (273)
Q Consensus 117 lP~p~~~~~~l~~~F~~~Gl~~~d~VaL~-GaHtiG~~hc~~f~~Rl~~dp~~d~~~~~~L~--~~Cp~~~~-~~~~~~~ 192 (273)
+|+|..++.+|++.|++||||++|||||+ ||||||++||..|.+||..||.+++.+++.|. ..||...+ +.....+
T Consensus 223 lPdP~~sa~~lR~tF~RMGmnDeEtVALiaGgHT~GkaHca~~~~rlgpdP~~a~~~~qgLgw~~~c~~g~g~dt~tsGl 302 (726)
T PRK15061 223 NPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGDASHVGPEPEAAPIEEQGLGWKNSYGSGKGADTITSGL 302 (726)
T ss_pred CCCcccCHHHHHHHHHHcCCCHHHheeeccCCceeeeCCCcCcccccCCCCCcCHHHHHhccccccCCCCCCCCCccccC
Confidence 89999999999999999999999999995 99999999999999999889999999999985 89997422 2234557
Q ss_pred C---CCCCcccChHHHHHHHhc------------------------------------CCccccchhcccCcchHHHHHH
Q 024025 193 D---RQTPTCFDNLYYKNLLNK------------------------------------KGLLHSDQELFNGNSADFLVKR 233 (273)
Q Consensus 193 D---~~tp~~FDn~Yy~~l~~~------------------------------------~glL~SD~~L~~d~~t~~~V~~ 233 (273)
| ..||.+|||+||++|+.+ .++|+||++|..||+++++|++
T Consensus 303 dG~Wt~tPt~fDN~YF~nLl~~~W~~~~sp~G~~qw~~~~~~~~~~~pd~~~~~~~~~~~MLtSD~AL~~DP~~r~iV~~ 382 (726)
T PRK15061 303 EGAWTTTPTQWDNGYFENLFGYEWELTKSPAGAWQWVPKDGAAEDTVPDAHDPSKKHAPTMLTTDLALRFDPEYEKISRR 382 (726)
T ss_pred CCCCCCCcchhhHHHHHHHhhCcceeccCCCccccccccCccccccCCcccccccccCcccccccHHhhcCCcHHHHHHH
Confidence 7 479999999999999985 5899999999999999999999
Q ss_pred HhhChhHHHHHHHHHHHHhh--cCCCCCCC
Q 024025 234 YAASISVFFKDFARGMIKMG--NIKPLTGS 261 (273)
Q Consensus 234 yA~d~~~F~~~Fa~am~Km~--~lgv~tg~ 261 (273)
||.|+++|+++|++||.||+ .+|+++-.
T Consensus 383 fA~d~~~F~~~FA~A~~KL~hrdmgp~~ry 412 (726)
T PRK15061 383 FLENPEEFADAFARAWFKLTHRDMGPKSRY 412 (726)
T ss_pred HhcCHHHHHHHHHHHHHHHcccCCCchhhh
Confidence 99999999999999999994 47776533
No 13
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins. This is a subgroup of heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX) which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions.
Probab=100.00 E-value=8.5e-51 Score=363.93 Aligned_cols=207 Identities=25% Similarity=0.296 Sum_probs=172.3
Q ss_pred ccchhHHHHHHhhcccc-------CCCCCccccccCCCCCccccc-cCCCCCcchhHHHHHHHHHHHHhhCCCCccHHHH
Q 024025 9 CLFCVIISLKLFQLNDD-------NQGCDGSVLLDDTANFIGEKT-AVPNNNSARGFNVVDQIKANLEKACPRVVSCADI 80 (273)
Q Consensus 9 ~~~~~~~llRl~FHDc~-------v~GcDgSill~~~~~~~~E~~-~~~N~~~~~g~~~i~~iK~~le~~cp~~VScADi 80 (273)
+...+++||||+||||+ ++||||||+++.. .+|+. ...|. ++++|+.|+.+ +||||||
T Consensus 38 ~~~~aa~~LRL~FHDc~t~~~~~g~gGcDgSIlle~~---~~En~G~~~n~-~l~~~~~i~~~----------~VScADi 103 (264)
T cd08201 38 GRQAAAEWLRTAFHDMATHNVDDGTGGLDASIQYELD---RPENIGSGFNT-TLNFFVNFYSP----------RSSMADL 103 (264)
T ss_pred CccHHHHHHHHHHHhhcCcccCCCCCCCCcceeecCC---ChhhccCchhh-ccccceeeccC----------ccCHHHH
Confidence 46789999999999999 8999999999742 36777 44443 67788776432 6999999
Q ss_pred HHHhhhcccc-cCCcceeecCCCCCCCccccccccCCCCCCCCCHHHHHHHHHHcCCCchhhhhhcc-cccccccccccc
Q 024025 81 LAIAARDSVV-FGGPSWKVRLGRRDSTTASRAAANTSIPPPTSNLSALISSFSAQGLSLKNMVALAG-GHTVGKARCTSF 158 (273)
Q Consensus 81 ialAar~Av~-~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~d~VaL~G-aHtiG~~hc~~f 158 (273)
||||+|+||+ +|||.|+|++||+|++++.+ . .||.|+.++++|++.|+++||+++|||+|+| |||||++||..|
T Consensus 104 ialAa~~AV~~~GGP~i~v~~GR~Da~~s~~---~-glP~P~~~v~~l~~~Fa~~Gfs~~DmVaLsggaHTiG~ahc~~f 179 (264)
T cd08201 104 IAMGVVTSVASCGGPVVPFRAGRIDATEAGQ---A-GVPEPQTDLGTTTESFRRQGFSTSEMIALVACGHTLGGVHSEDF 179 (264)
T ss_pred HHHHHHHHHHHcCCCeecccccCCCcccccc---c-cCCCCccCHHHHHHHHHHcCCChHHHheeecCCeeeeecccccc
Confidence 9999999999 99999999999999998864 2 4999999999999999999999999999995 999999999998
Q ss_pred cccccCCCCCCHHHHHHhhccCCCCCCCCccccCCCCCCcccChHHHHHHHhcCC----------ccccchhcccCcchH
Q 024025 159 RGHIYNDSNIDTSFARSLQQRCPRRGNDNVLANLDRQTPTCFDNLYYKNLLNKKG----------LLHSDQELFNGNSAD 228 (273)
Q Consensus 159 ~~Rl~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~D~~tp~~FDn~Yy~~l~~~~g----------lL~SD~~L~~d~~t~ 228 (273)
.+++- |. ...+...++| .||.+|||+||.+++.+.. .+.||..+|....-
T Consensus 180 ~~~~~--~g----------------~~~~~~~p~d-stp~~FDn~~f~E~l~g~~~~~L~~~~~~~~~sd~r~f~~d~n- 239 (264)
T cd08201 180 PEIVP--PG----------------SVPDTVLQFF-DTTIQFDNKVVTEYLSGTTNNPLVVGPNNTTNSDLRIFSSDGN- 239 (264)
T ss_pred hhhcC--Cc----------------cccCCCCCCC-CCccccchHHHHHHhcCCCCCceeecCCCCccchhhheecCcc-
Confidence 77642 10 0001235778 7999999999999998753 46799999976543
Q ss_pred HHHHHHhhChhHHHHHHHHHHHHhhc
Q 024025 229 FLVKRYAASISVFFKDFARGMIKMGN 254 (273)
Q Consensus 229 ~~V~~yA~d~~~F~~~Fa~am~Km~~ 254 (273)
..++.+| +++.|.+.++..++||.+
T Consensus 240 ~t~~~l~-~~~~f~~~c~~~~~~mi~ 264 (264)
T cd08201 240 VTMNELA-SPDTFQKTCADILQRMID 264 (264)
T ss_pred HHHHHhc-ChHHHHHHHHHHHHHHhC
Confidence 3678887 799999999999999974
No 14
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C-terminal do
Probab=100.00 E-value=2.2e-40 Score=300.19 Aligned_cols=209 Identities=21% Similarity=0.259 Sum_probs=173.0
Q ss_pred cchhHHHHHHhhccccC-------CCCCcc-ccccCCCCCccccccCCCCC--cchhHHHHHHHHHHHHhh-CCC-CccH
Q 024025 10 LFCVIISLKLFQLNDDN-------QGCDGS-VLLDDTANFIGEKTAVPNNN--SARGFNVVDQIKANLEKA-CPR-VVSC 77 (273)
Q Consensus 10 ~~~~~~llRl~FHDc~v-------~GcDgS-ill~~~~~~~~E~~~~~N~~--~~~g~~~i~~iK~~le~~-cp~-~VSc 77 (273)
..++|+||||+||++.+ ||++|+ |.| .+|++++.|.+ +.+.+.+++.||+++... -++ .||.
T Consensus 27 gl~~~~lvrlAWhsAgTyr~sd~rGGaNGariRl------~pe~~w~~N~~~~L~~~~~~Le~ik~~~~~~~~~~~~vS~ 100 (297)
T cd08200 27 GLTVSELVSTAWASASTFRNSDKRGGANGARIRL------APQKDWEVNEPEELAKVLAVLEGIQKEFNESQSGGKKVSL 100 (297)
T ss_pred CCcHHHHHHHhhhccccccCCCCCCCCCcccccC------ccccCcCccCcHHHHHHHHHHHHHHHHhcccccCCccccH
Confidence 47899999999999985 899999 655 46999999997 668899999999998532 222 6999
Q ss_pred HHHHHHhhhcccc-cCC-----cceeecCCCCCCCcccccccc---CCCCCCC------------CCHHHHHHHHHHcCC
Q 024025 78 ADILAIAARDSVV-FGG-----PSWKVRLGRRDSTTASRAAAN---TSIPPPT------------SNLSALISSFSAQGL 136 (273)
Q Consensus 78 ADiialAar~Av~-~GG-----P~~~v~~GR~D~~~s~~~~~~---~~lP~p~------------~~~~~l~~~F~~~Gl 136 (273)
||+|+||+..||+ +|| |.|++.+||.|+..+... ++ ..+|.+. ...+.|+++|.++||
T Consensus 101 ADLivLaG~vAiE~agg~ag~~p~Ipf~pGR~Da~~~~td-~~sf~~l~P~adg~rny~~~~~~~~~~~~Lrd~f~rlgl 179 (297)
T cd08200 101 ADLIVLGGCAAVEKAAKDAGVDIKVPFTPGRTDATQEQTD-VESFEVLEPKADGFRNYLKKGYRVPPEEMLVDKAQLLTL 179 (297)
T ss_pred HHHHHHHhHHHHHHHHhccCCCceeccCCCCCCcccCCCC-cccccccCCCCcccccccccCCCCCHHHHHHHHHHhCCC
Confidence 9999999999999 999 999999999999876421 21 1334332 245789999999999
Q ss_pred Cchhhhhhcccc-cccccccccccccccCCCCCCHHHHHHhhccCCCCCCCCccccCCCCCCcccChHHHHHHHhcC---
Q 024025 137 SLKNMVALAGGH-TVGKARCTSFRGHIYNDSNIDTSFARSLQQRCPRRGNDNVLANLDRQTPTCFDNLYYKNLLNKK--- 212 (273)
Q Consensus 137 ~~~d~VaL~GaH-tiG~~hc~~f~~Rl~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~D~~tp~~FDn~Yy~~l~~~~--- 212 (273)
|++|||||+||| ++|+.|..+ ..+.|+ .+|.+|||.||++|++..
T Consensus 180 sd~EmvaL~Gg~r~lG~~~~~s---------------------------~~G~wT----~~p~~f~N~fF~nLLd~~~~W 228 (297)
T cd08200 180 TAPEMTVLVGGLRVLGANYGGS---------------------------KHGVFT----DRPGVLTNDFFVNLLDMSTEW 228 (297)
T ss_pred ChHHHhheecchhhcccCCCCC---------------------------CCCCCc----CCCCccccHHHHHHhccccee
Confidence 999999999997 799888432 123344 689999999999999621
Q ss_pred -----------------C-----ccccchhcccCcchHHHHHHHhhC--hhHHHHHHHHHHHHhhcCC
Q 024025 213 -----------------G-----LLHSDQELFNGNSADFLVKRYAAS--ISVFFKDFARGMIKMGNIK 256 (273)
Q Consensus 213 -----------------g-----lL~SD~~L~~d~~t~~~V~~yA~d--~~~F~~~Fa~am~Km~~lg 256 (273)
| .+.+|..|.+|++.|++|+.||.| +++|+++|++||+||+++.
T Consensus 229 ~~~~~~~~~~~~~dr~~g~~~~~~t~~Dl~l~sd~~~R~~ve~YA~dd~~~~F~~DF~~A~~Klmeld 296 (297)
T cd08200 229 KPADEDDGLFEGRDRKTGEVKWTATRVDLVFGSNSELRAVAEVYASDDAQEKFVKDFVAAWTKVMNLD 296 (297)
T ss_pred eecCCCCCceeeccCCCCceeeccChhhhhhccCHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhcC
Confidence 1 268899999999999999999998 9999999999999999875
No 15
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=3.5e-35 Score=292.13 Aligned_cols=207 Identities=23% Similarity=0.269 Sum_probs=170.4
Q ss_pred cchhHHHHHHhhccccC-------CCCCcc-ccccCCCCCccccccCCC--CCcchhHHHHHHHHHHHHhhCCCCccHHH
Q 024025 10 LFCVIISLKLFQLNDDN-------QGCDGS-VLLDDTANFIGEKTAVPN--NNSARGFNVVDQIKANLEKACPRVVSCAD 79 (273)
Q Consensus 10 ~~~~~~llRl~FHDc~v-------~GcDgS-ill~~~~~~~~E~~~~~N--~~~~~g~~~i~~iK~~le~~cp~~VScAD 79 (273)
.-.+++|||++||++.+ ||++|+ |.| .+|++++.| .++.+.+.+++.||+++.+ ..||.||
T Consensus 445 gl~~~~lVr~AWhsA~Tyr~sd~rGGaNGariRl------~pe~~w~~N~p~gL~~vl~~Le~Ik~~f~~---~~vS~AD 515 (716)
T TIGR00198 445 GLSVSELVCTAWASASTFRSSDYRGGANGARIRL------EPQKNWPVNEPTRLAKVLAVLEKIQAEFAK---GPVSLAD 515 (716)
T ss_pred CCcHHHHHHHhhhhcccccCCCCCCCCCcceeec------chhcCcccCCHHHHHHHHHHHHHHHHHcCC---CcccHHH
Confidence 45789999999999985 899999 655 469999999 6667889999999998863 2799999
Q ss_pred HHHHhhhcccc-c---CCc--ceeecCCCCCCCccccccccCCCC-----C----------CCCCHHHHHHHHHHcCCCc
Q 024025 80 ILAIAARDSVV-F---GGP--SWKVRLGRRDSTTASRAAANTSIP-----P----------PTSNLSALISSFSAQGLSL 138 (273)
Q Consensus 80 iialAar~Av~-~---GGP--~~~v~~GR~D~~~s~~~~~~~~lP-----~----------p~~~~~~l~~~F~~~Gl~~ 138 (273)
+|+||+..||| + ||| .|++.+||.|++.... +++...| + .....+.|+++|..+|||+
T Consensus 516 LivLaG~vAVE~aa~~gG~~~~Vpf~pGR~Da~~~~t-d~~~~~~l~p~adgfRn~~~~~~~~~~~~~l~d~a~~lglt~ 594 (716)
T TIGR00198 516 LIVLGGGAAVEKAALDAGISVNVPFLPGRVDATQAMT-DAESFTPLEPIADGFRNYLKRDYAVTPEELLLDKAQLLTLTA 594 (716)
T ss_pred HHHHHHHHHHHHHHHhCCCCcccCcCCCCCccccCCC-CccccccCCCCCcccchhccccccCCHHHHHHHHHHhCCCCh
Confidence 99999999999 6 998 5788999999987642 2333222 1 1224567899999999999
Q ss_pred hhhhhhccc-ccccccccccccccccCCCCCCHHHHHHhhccCCCCCCCCccccCCCCCCcccChHHHHHHHhcC-----
Q 024025 139 KNMVALAGG-HTVGKARCTSFRGHIYNDSNIDTSFARSLQQRCPRRGNDNVLANLDRQTPTCFDNLYYKNLLNKK----- 212 (273)
Q Consensus 139 ~d~VaL~Ga-HtiG~~hc~~f~~Rl~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~D~~tp~~FDn~Yy~~l~~~~----- 212 (273)
+|||||+|| |++|+.|..+ ..+.|+ .+|.+|||.||++|++..
T Consensus 595 ~EmvaL~Gg~r~lG~~~~~s---------------------------~~G~~T----~~p~~f~NdfF~~LLd~~~~w~~ 643 (716)
T TIGR00198 595 PEMTVLIGGMRVLGANHGGS---------------------------KHGVFT----DRVGVLSNDFFVNLLDMAYEWRA 643 (716)
T ss_pred HHHHheecchhhccccCCCC---------------------------CCCCCc----CCCCccccHHHHHHhcCCceeee
Confidence 999999998 5999999532 123344 589999999999999731
Q ss_pred ---------------C---c--cccchhcccCcchHHHHHHHhhCh--hHHHHHHHHHHHHhhcCCC
Q 024025 213 ---------------G---L--LHSDQELFNGNSADFLVKRYAASI--SVFFKDFARGMIKMGNIKP 257 (273)
Q Consensus 213 ---------------g---l--L~SD~~L~~d~~t~~~V~~yA~d~--~~F~~~Fa~am~Km~~lgv 257 (273)
| + ..+|..|.+|++.|++|+.||+|+ ++|+++|++||+|+++++-
T Consensus 644 ~~~~~~~~~~~dr~tg~~~~~~t~~Dl~~~sd~~lra~aE~YA~dd~~~~F~~DF~~Aw~Klm~ldr 710 (716)
T TIGR00198 644 ADNNRYLFEGGDRQTGEVKWTATRVDLVFGSNSILRAVAEVYAQDDAREKFVKDFVAAWTKVMNLDR 710 (716)
T ss_pred cCCCCceeeeecCCCCceeeccChhheeeccCHHHHHHHHHHhcccccchHHHHHHHHHHHHHhCCC
Confidence 2 2 278999999999999999999997 8999999999999999874
No 16
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=8.9e-35 Score=287.85 Aligned_cols=209 Identities=22% Similarity=0.299 Sum_probs=172.4
Q ss_pred chhHHHHHHhhccccC-------CCCCcc-ccccCCCCCccccccCCCC--CcchhHHHHHHHHHHHHhhC-C-CCccHH
Q 024025 11 FCVIISLKLFQLNDDN-------QGCDGS-VLLDDTANFIGEKTAVPNN--NSARGFNVVDQIKANLEKAC-P-RVVSCA 78 (273)
Q Consensus 11 ~~~~~llRl~FHDc~v-------~GcDgS-ill~~~~~~~~E~~~~~N~--~~~~g~~~i~~iK~~le~~c-p-~~VScA 78 (273)
-.+|+|||++||++.+ ||++|+ |.|. +|++++.|. ++.+.+.+++.||+++...- . ..||.|
T Consensus 453 l~~~~LVr~AWhsA~Tyr~sd~rGGaNGarIRl~------Pq~~w~~N~p~~L~~vl~~LE~Ik~~f~~~~~~~~~vS~A 526 (726)
T PRK15061 453 LSVSELVSTAWASASTFRGSDKRGGANGARIRLA------PQKDWEVNEPAQLAKVLAVLEGIQAEFNAAQSGGKKVSLA 526 (726)
T ss_pred CcHHHHHHHHHhhcccccCCCCCCCCCccceecc------cccCccccCHHHHHHHHHHHHHHHHHHhhccCCCCceeHH
Confidence 3589999999999985 899999 7664 699999998 66788999999999986432 1 369999
Q ss_pred HHHHHhhhcccc-c---CC--cceeecCCCCCCCccccccccC---CCCCCC------------CCHHHHHHHHHHcCCC
Q 024025 79 DILAIAARDSVV-F---GG--PSWKVRLGRRDSTTASRAAANT---SIPPPT------------SNLSALISSFSAQGLS 137 (273)
Q Consensus 79 DiialAar~Av~-~---GG--P~~~v~~GR~D~~~s~~~~~~~---~lP~p~------------~~~~~l~~~F~~~Gl~ 137 (273)
|+|+||+..||+ + || |.|++..||.|++.... +++. .+|... ...+.|+++|.++|||
T Consensus 527 DLivLaG~vAIE~aa~~aG~~~~VPf~pGR~Da~~~~t-d~esf~~l~P~Adgfrny~~~~~~~~~e~~L~d~a~~lglt 605 (726)
T PRK15061 527 DLIVLGGNAAVEQAAKAAGHDVTVPFTPGRTDATQEQT-DVESFAVLEPKADGFRNYLKKGYSVSPEELLVDKAQLLTLT 605 (726)
T ss_pred HHHHHHHHHHHHHHHHhCCCCcccCcCCCCCCcccCCC-CcccccccCCCCccccccccccCCCCHHHHHHHHHHhCCCC
Confidence 999999999999 5 68 99999999999987542 2322 456532 2348899999999999
Q ss_pred chhhhhhcccc-cccccccccccccccCCCCCCHHHHHHhhccCCCCCCCCccccCCCCCCcccChHHHHHHHhcC----
Q 024025 138 LKNMVALAGGH-TVGKARCTSFRGHIYNDSNIDTSFARSLQQRCPRRGNDNVLANLDRQTPTCFDNLYYKNLLNKK---- 212 (273)
Q Consensus 138 ~~d~VaL~GaH-tiG~~hc~~f~~Rl~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~D~~tp~~FDn~Yy~~l~~~~---- 212 (273)
++|||||+||| ++|+.|..+ ..+.|+ .+|.+|||.||+||++..
T Consensus 606 ~~EmvaL~Gg~r~Lg~~~~~S---------------------------~~G~~T----~~p~~fsNdfFvnLLdm~~~W~ 654 (726)
T PRK15061 606 APEMTVLVGGLRVLGANYGGS---------------------------KHGVFT----DRPGVLTNDFFVNLLDMGTEWK 654 (726)
T ss_pred hHHHhheecchhhcccCCCCC---------------------------CCCCCc----CCCCccccHHHHHHhcCCceee
Confidence 99999999997 788888432 123344 589999999999999621
Q ss_pred ----------------C-----ccccchhcccCcchHHHHHHHhhC--hhHHHHHHHHHHHHhhcCCC
Q 024025 213 ----------------G-----LLHSDQELFNGNSADFLVKRYAAS--ISVFFKDFARGMIKMGNIKP 257 (273)
Q Consensus 213 ----------------g-----lL~SD~~L~~d~~t~~~V~~yA~d--~~~F~~~Fa~am~Km~~lgv 257 (273)
| .+.+|..|.+|++.|++|+.||+| +++|+++|++||.|+++++-
T Consensus 655 ~~~~~~~~ye~~Dr~tg~~~~~~t~~Dlvfgsds~lRa~aEvYA~dd~~~kF~~DF~~Aw~Kvmeldr 722 (726)
T PRK15061 655 PTDEDEEVYEGRDRKTGEVKWTATRVDLVFGSNSQLRALAEVYASDDAKEKFVRDFVAAWTKVMNLDR 722 (726)
T ss_pred ecCCCCCceeeccCCCcceeeccChhheecccCHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCCC
Confidence 1 147899999999999999999999 99999999999999999874
No 17
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.98 E-value=2.7e-32 Score=259.61 Aligned_cols=242 Identities=19% Similarity=0.265 Sum_probs=194.9
Q ss_pred ehhhc-cchhHHHHHHhhccccC-------CCCCccccccCCCCCccccccCCCCCcchhHHHHHHHHHHHHhhCCCCcc
Q 024025 5 FWVVC-LFCVIISLKLFQLNDDN-------QGCDGSVLLDDTANFIGEKTAVPNNNSARGFNVVDQIKANLEKACPRVVS 76 (273)
Q Consensus 5 ~~~~~-~~~~~~llRl~FHDc~v-------~GcDgSill~~~~~~~~E~~~~~N~~~~~g~~~i~~iK~~le~~cp~~VS 76 (273)
.||.+ .+|.|.+|||+||-+++ ||..+.- .++.++.++|.|.++.+++.++..||+++. ..+|
T Consensus 86 WWPAD~GhYGplfIRmAWHsAGTYRi~DGRGGa~~G~-----qRFaPlnSWPDN~nLDKarRLLWPIKkKYG----~kiS 156 (730)
T COG0376 86 WWPADFGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQ-----QRFAPLNSWPDNANLDKARRLLWPIKKKYG----RKIS 156 (730)
T ss_pred cCcccccccccceeeeeecccCceecccCCCCCCCCc-----eecccccCCCcccchHHHHHHhhhHhHhhc----cccc
Confidence 69999 67999999999999985 4443322 246678899999988899999999999986 5899
Q ss_pred HHHHHHHhhhcccc-cCCcceeecCCCCCCCccccc-------------------------------------cccCCCC
Q 024025 77 CADILAIAARDSVV-FGGPSWKVRLGRRDSTTASRA-------------------------------------AANTSIP 118 (273)
Q Consensus 77 cADiialAar~Av~-~GGP~~~v~~GR~D~~~s~~~-------------------------------------~~~~~lP 118 (273)
+||+|.|++.+|++ +|++.+.+..||.|...+... +-+...|
T Consensus 157 WaDL~iLaGnvAlEsMGfktfGFa~GR~D~wepd~dvyWG~e~~wl~d~Ry~~~~~Le~PlaavqMGLIYVNPEGpng~P 236 (730)
T COG0376 157 WADLIILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGSEKTWLGDERYSGDRDLENPLAAVQMGLIYVNPEGPNGNP 236 (730)
T ss_pred HhHhhhhhchhhhhhcCCccccccCCCCcCCCCccccccCccccccccccccccccccCchhhheeeeEEeCCCCCCCCC
Confidence 99999999999999 999999999999998877550 1234689
Q ss_pred CCCCCHHHHHHHHHHcCCCchhhhhhc-ccccccccccccccccccCCCCCCHHHHHHhh--ccCCCCCCC-Cc----cc
Q 024025 119 PPTSNLSALISSFSAQGLSLKNMVALA-GGHTVGKARCTSFRGHIYNDSNIDTSFARSLQ--QRCPRRGND-NV----LA 190 (273)
Q Consensus 119 ~p~~~~~~l~~~F~~~Gl~~~d~VaL~-GaHtiG~~hc~~f~~Rl~~dp~~d~~~~~~L~--~~Cp~~~~~-~~----~~ 190 (273)
+|-.+..+++..|++|+++++|.|||+ ||||+|++|...=.+-+..+|.-.+--.+.|- ..|....+. .. -+
T Consensus 237 Dpl~aA~dIRetFaRMaMNDeETVALiaGGHtfGKtHGag~a~~vg~ePe~a~ie~qGlGW~~~~g~G~G~dtitsGlE~ 316 (730)
T COG0376 237 DPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASNVGPEPEAAPIEQQGLGWANTYGSGKGPDTITSGLEG 316 (730)
T ss_pred ChhhhHHHHHHHHHHhcCCcHhhhhhhhcccccccccCCCchhhcCCCccccchhhhccccccccCCCcCcccccccccc
Confidence 999999999999999999999999998 69999999976544444446655444444442 233322111 11 12
Q ss_pred cCCCCCCcccChHHHHHHHhcC-----------------------------------CccccchhcccCcchHHHHHHHh
Q 024025 191 NLDRQTPTCFDNLYYKNLLNKK-----------------------------------GLLHSDQELFNGNSADFLVKRYA 235 (273)
Q Consensus 191 ~~D~~tp~~FDn~Yy~~l~~~~-----------------------------------glL~SD~~L~~d~~t~~~V~~yA 235 (273)
.+- .||++|||+||.+|+... .+|.+|.+|..||+.+++.++|.
T Consensus 317 ~Wt-~tPT~w~n~ff~~Lf~yEWeltksPAGa~Qw~~k~~~~~~~pd~~dp~~~~~p~MlttDlaLr~DP~Y~kIs~rf~ 395 (730)
T COG0376 317 AWT-TTPTQWSNEFFENLFNYEWELTKSPAGAWQWDAKSAAAETIPDAHDPSKKHGPMMLTTDLALRFDPEYEKISRRFL 395 (730)
T ss_pred cCC-CCcchhhhHHHHHHhccceeeecCCCccccccccCccccCCCCCCCcccccCceeeccchhhhcChHHHHHHHHHH
Confidence 222 689999999999999742 37999999999999999999999
Q ss_pred hChhHHHHHHHHHHHHhhcCC
Q 024025 236 ASISVFFKDFARGMIKMGNIK 256 (273)
Q Consensus 236 ~d~~~F~~~Fa~am~Km~~lg 256 (273)
.|++.|.+.|++||-||..-+
T Consensus 396 e~pd~F~~~FArAWfKLtHRD 416 (730)
T COG0376 396 EDPDEFADAFARAWFKLTHRD 416 (730)
T ss_pred hCHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999998643
No 18
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.53 E-value=4.8e-14 Score=135.54 Aligned_cols=202 Identities=21% Similarity=0.273 Sum_probs=147.6
Q ss_pred hHHHHHHhhccccC-------CCCCcccc-ccCCCCCccccccCCCCC--cchhHHHHHHHHHHHHhhCCCCccHHHHHH
Q 024025 13 VIISLKLFQLNDDN-------QGCDGSVL-LDDTANFIGEKTAVPNNN--SARGFNVVDQIKANLEKACPRVVSCADILA 82 (273)
Q Consensus 13 ~~~llRl~FHDc~v-------~GcDgSil-l~~~~~~~~E~~~~~N~~--~~~g~~~i~~iK~~le~~cp~~VScADiia 82 (273)
+++|+-.+|--+-+ ||.+|.-+ |. +.++++.|.. +.+-+.+++.|++... ..||.||+|+
T Consensus 465 vs~lVstAWaSAsTfRgsDkRGGaNGaRirLa------PqkdWevN~P~~l~kvl~~le~iq~~fn----kkvSlADlIV 534 (730)
T COG0376 465 VSQLVSTAWASASTFRGSDKRGGANGARIRLA------PQKDWEVNQPAELAKVLAVLEKIQKEFN----KKVSLADLIV 534 (730)
T ss_pred HHHHHHHHHHhhhhccCCcccCCcCcceEeec------ccccCCCCCHHHHHHHHHHHHHHHHHhc----CccchhHhee
Confidence 56778888877754 67877653 43 5789999964 2367788888888887 4799999999
Q ss_pred Hhhhcccc----cCCcce--eecCCCCCCCccccccccC--CC-CC------------CCCCHHHHHHHHHHcCCCchhh
Q 024025 83 IAARDSVV----FGGPSW--KVRLGRRDSTTASRAAANT--SI-PP------------PTSNLSALISSFSAQGLSLKNM 141 (273)
Q Consensus 83 lAar~Av~----~GGP~~--~v~~GR~D~~~s~~~~~~~--~l-P~------------p~~~~~~l~~~F~~~Gl~~~d~ 141 (273)
|++..||+ .+|-.+ ++..||.|+.+.... ++. .| |- ...+.+-|+++-+-.+||..||
T Consensus 535 L~G~a~ie~AAk~aG~~v~VPF~pGR~DA~qeqtD-v~sf~~LeP~aDGfRNy~~~~~~~~pe~~LvDkAqlL~Ltapem 613 (730)
T COG0376 535 LGGNAAVEKAAKAAGFSVTVPFAPGRTDASQEQTD-VESFAVLEPIADGFRNYVKKDYVLTPEELLVDKAQLLTLTAPEM 613 (730)
T ss_pred ecchHHHHHHHHhcCceeeeccCCCCcccchhhcc-hhhhhcccccchhhhhhccCCCcCCHHHHHHHHHHHhccCCccc
Confidence 99999999 467654 556999999866432 211 11 11 1123456778888999999999
Q ss_pred hhhcccc-cccccccccccccccCCCCCCHHHHHHhhccCCCCCCCCccccCCCCCCcccChHHHHHHHhcC--------
Q 024025 142 VALAGGH-TVGKARCTSFRGHIYNDSNIDTSFARSLQQRCPRRGNDNVLANLDRQTPTCFDNLYYKNLLNKK-------- 212 (273)
Q Consensus 142 VaL~GaH-tiG~~hc~~f~~Rl~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~D~~tp~~FDn~Yy~~l~~~~-------- 212 (273)
++|+||- .+|..+.. ....+.- ..|..+.|.||.||++..
T Consensus 614 tVLiGGlRvLg~n~g~-----------------------------s~~GVfT--~~pg~LtndFFvnLlDM~~~W~~~~~ 662 (730)
T COG0376 614 TVLIGGLRVLGANYGG-----------------------------SKHGVFT--DRPGVLTNDFFVNLLDMGTEWKPTDD 662 (730)
T ss_pred eEEEcceEeeccCCCC-----------------------------Cccceec--cCcccccchhhhhhhhccceeeeccc
Confidence 9999875 44443321 1111222 368889999999999742
Q ss_pred ------------C-----ccccchhcccCcchHHHHHHHhhC--hhHHHHHHHHHHHHhhcCC
Q 024025 213 ------------G-----LLHSDQELFNGNSADFLVKRYAAS--ISVFFKDFARGMIKMGNIK 256 (273)
Q Consensus 213 ------------g-----lL~SD~~L~~d~~t~~~V~~yA~d--~~~F~~~Fa~am~Km~~lg 256 (273)
| --..|..+-+++..|.+.+-||++ +++|.++|+.||.|..++.
T Consensus 663 ~~~~feg~DrktG~~kwt~trvDLvfGsns~LRA~aEVYa~dda~ekFv~DFvaaw~kVMn~D 725 (730)
T COG0376 663 ARGLFEGRDRKTGEVKWTATRVDLVFGSNSELRALAEVYASDDAKEKFVKDFVAAWTKVMNLD 725 (730)
T ss_pred cccceeccccccCceEeeeeEEeEEecCcHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccc
Confidence 2 135788888999999999999986 8999999999999999875
No 19
>PTZ00411 transaldolase-like protein; Provisional
Probab=88.61 E-value=3.2 Score=39.25 Aligned_cols=149 Identities=12% Similarity=0.128 Sum_probs=75.8
Q ss_pred CccHHHHHHHhhhcccc---cCCcceeecCCCCCCCccccccccCCCCCCC---CCHHHHHHHHHHcCCC----------
Q 024025 74 VVSCADILAIAARDSVV---FGGPSWKVRLGRRDSTTASRAAANTSIPPPT---SNLSALISSFSAQGLS---------- 137 (273)
Q Consensus 74 ~VScADiialAar~Av~---~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~---~~~~~l~~~F~~~Gl~---------- 137 (273)
.|.|-=.+.+....|+. +|-..+..+.||.+...-.........+... ..+.++...|++.|+.
T Consensus 160 GI~~N~TlvFS~~QA~aaaeAGa~~ISPfVGRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~g~~T~Im~ASfRn 239 (333)
T PTZ00411 160 GIHCNLTLLFSFAQAVACAQAGVTLISPFVGRILDWYKKPEKAESYVGAQDPGVISVTKIYNYYKKHGYKTIVMGASFRN 239 (333)
T ss_pred CCceeEeEecCHHHHHHHHHcCCCEEEeecchHHHhcccccccccccccCCchHHHHHHHHHHHHHcCCCeEEEecccCC
Confidence 34443333444444444 6878899999999765322111111112112 3467788888888875
Q ss_pred chhhhhhcccccccccccccccccccCCCCCCHHHHHHhhccC-CCCCC--CCccccCCCCCCcccChHHHHHHHhcCCc
Q 024025 138 LKNMVALAGGHTVGKARCTSFRGHIYNDSNIDTSFARSLQQRC-PRRGN--DNVLANLDRQTPTCFDNLYYKNLLNKKGL 214 (273)
Q Consensus 138 ~~d~VaL~GaHtiG~~hc~~f~~Rl~~dp~~d~~~~~~L~~~C-p~~~~--~~~~~~~D~~tp~~FDn~Yy~~l~~~~gl 214 (273)
.+|+..|.|+|.+ ++.|....+|...- .+-.. +.....-....+..+|-..|+-.++..++
T Consensus 240 ~~qi~~laG~D~l----------------Ti~p~ll~~L~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~fr~~~~~d~m 303 (333)
T PTZ00411 240 TGEILELAGCDKL----------------TISPKLLEELANTEDGPVERKLDPEKLTEDTEKLPELTEKEFRWELNEDAM 303 (333)
T ss_pred HHHHHHHHCCCEE----------------eCCHHHHHHHHhCCCcccCcccCcccccccccccCCCCHHHHHHHhCCCcc
Confidence 4666777777754 24566666664422 11000 00001100112345788888754332222
Q ss_pred cccchhcccCcchHHHHHHHhhChhHHHHHHH
Q 024025 215 LHSDQELFNGNSADFLVKRYAASISVFFKDFA 246 (273)
Q Consensus 215 L~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa 246 (273)
.-..+..-++.|+.|+....+-..
T Consensus 304 --------a~ekl~~gir~F~~d~~~Le~~i~ 327 (333)
T PTZ00411 304 --------ATEKLAEGIRNFAKDLEKLENVIR 327 (333)
T ss_pred --------hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 012344567777777766554443
No 20
>PRK12346 transaldolase A; Provisional
Probab=82.51 E-value=6.9 Score=36.80 Aligned_cols=88 Identities=15% Similarity=0.178 Sum_probs=53.3
Q ss_pred CccHHHHHHHhhhcccc---cCCcceeecCCCCCCCccccccccCCCCCC----CCCHHHHHHHHHHcCCC---------
Q 024025 74 VVSCADILAIAARDSVV---FGGPSWKVRLGRRDSTTASRAAANTSIPPP----TSNLSALISSFSAQGLS--------- 137 (273)
Q Consensus 74 ~VScADiialAar~Av~---~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p----~~~~~~l~~~F~~~Gl~--------- 137 (273)
.|+|-=.+.+....|+. +|-..+..+.||.|...-... ....++.. -..+.++...|++.|+.
T Consensus 149 GI~~n~TliFS~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~-~~~~~~~~~~~Gv~~v~~i~~~~k~~~~~T~Vm~ASfR 227 (316)
T PRK12346 149 GINCNLTLLFSFAQARACAEAGVFLISPFVGRIYDWYQARK-PMDPYVVEEDPGVKSVRNIYDYYKQHRYETIVMGASFR 227 (316)
T ss_pred CCceeEEEecCHHHHHHHHHcCCCEEEecccHHHHhhhhcc-ccccccccCCChHHHHHHHHHHHHHcCCCcEEEecccC
Confidence 45554445555555555 788899999999987533211 11112221 23467888888888864
Q ss_pred -chhhhhhcccccccccccccccccccCCCCCCHHHHHHhhc
Q 024025 138 -LKNMVALAGGHTVGKARCTSFRGHIYNDSNIDTSFARSLQQ 178 (273)
Q Consensus 138 -~~d~VaL~GaHtiG~~hc~~f~~Rl~~dp~~d~~~~~~L~~ 178 (273)
.+|+.+|.|+|.+ ++.|....+|..
T Consensus 228 n~~qi~alaG~d~l----------------Ti~p~ll~~L~~ 253 (316)
T PRK12346 228 RTEQILALAGCDRL----------------TISPNLLKELQE 253 (316)
T ss_pred CHHHHHHHhCCCEE----------------eCCHHHHHHHHh
Confidence 4566677777644 355666666654
No 21
>PRK05269 transaldolase B; Provisional
Probab=82.40 E-value=7.1 Score=36.73 Aligned_cols=145 Identities=12% Similarity=0.155 Sum_probs=72.2
Q ss_pred CccHHHHHHHhhhcccc---cCCcceeecCCCCCCCccccccccCCCC---CCCCCHHHHHHHHHHcCCCch--------
Q 024025 74 VVSCADILAIAARDSVV---FGGPSWKVRLGRRDSTTASRAAANTSIP---PPTSNLSALISSFSAQGLSLK-------- 139 (273)
Q Consensus 74 ~VScADiialAar~Av~---~GGP~~~v~~GR~D~~~s~~~~~~~~lP---~p~~~~~~l~~~F~~~Gl~~~-------- 139 (273)
.|+|-=.+.+....|+. +|-..+..+.||.|...-........-+ ++-..+.++...|++.|+..+
T Consensus 150 GI~vn~TlvFs~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~~~~t~im~ASfrn 229 (318)
T PRK05269 150 GINCNLTLLFSFAQARACAEAGVFLISPFVGRILDWYKKNTGKKEYAPAEDPGVVSVTKIYNYYKKHGYKTVVMGASFRN 229 (318)
T ss_pred CCceeEeEecCHHHHHHHHHcCCCEEEeeccHHHHHhhhcccccccCcCCCcHHHHHHHHHHHHHHcCCCceEEeeccCC
Confidence 34443333444444444 6888899999999865221100000011 123357788889989888654
Q ss_pred --hhhhhcccccccccccccccccccCCCCCCHHHHHHhhccCCCCCCCCccccCC--CCCCcccChHHHHHHHhcCCcc
Q 024025 140 --NMVALAGGHTVGKARCTSFRGHIYNDSNIDTSFARSLQQRCPRRGNDNVLANLD--RQTPTCFDNLYYKNLLNKKGLL 215 (273)
Q Consensus 140 --d~VaL~GaHtiG~~hc~~f~~Rl~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~D--~~tp~~FDn~Yy~~l~~~~glL 215 (273)
++..|.|+|++ ++.|....+|...-... .....+.+ ...+..+|-..|+-.++...+
T Consensus 230 ~~~v~~laG~d~v----------------Ti~p~ll~~l~~~~~~~--~~~l~~~~~~~~~~~~~~e~~f~~~~~~d~m- 290 (318)
T PRK05269 230 TGQILELAGCDRL----------------TISPALLEELAASEGEL--ERKLSPPGEAKARPVPLTEAEFRWQHNEDAM- 290 (318)
T ss_pred HHHHHHHhCCCeE----------------ECCHHHHHHHHhcCCCc--cccCCCccccccccccCCHHHHHHHhCcccc-
Confidence 44445555543 35666666665421110 00000000 012455677777654443221
Q ss_pred ccchhcccCcchHHHHHHHhhChhHHHHH
Q 024025 216 HSDQELFNGNSADFLVKRYAASISVFFKD 244 (273)
Q Consensus 216 ~SD~~L~~d~~t~~~V~~yA~d~~~F~~~ 244 (273)
.......-++.|+.++....+-
T Consensus 291 -------a~ekl~egi~~F~~~~~~L~~~ 312 (318)
T PRK05269 291 -------ATEKLAEGIRKFAKDQEKLEKL 312 (318)
T ss_pred -------hHHHHHHHHHHHHHHHHHHHHH
Confidence 1123345566676666554443
No 22
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=81.42 E-value=12 Score=35.30 Aligned_cols=157 Identities=13% Similarity=0.220 Sum_probs=79.6
Q ss_pred hhHHHHHHHHHHHHhhCCCCccHHHHHHHhhhcccc---cCCcceeecCCCCCCCccccccccCCCC----CCCCCHHHH
Q 024025 55 RGFNVVDQIKANLEKACPRVVSCADILAIAARDSVV---FGGPSWKVRLGRRDSTTASRAAANTSIP----PPTSNLSAL 127 (273)
Q Consensus 55 ~g~~~i~~iK~~le~~cp~~VScADiialAar~Av~---~GGP~~~v~~GR~D~~~s~~~~~~~~lP----~p~~~~~~l 127 (273)
.|+..+..+++. .|+|-=.+.+....|+. +|-..+..+.||.|...-...... ..+ ++-..+.++
T Consensus 136 eGi~A~~~L~~~-------GI~vN~TliFS~~Qa~aaa~AGa~~ISPFVgRi~dw~~~~~g~~-~~~~~~d~Gv~~v~~i 207 (317)
T TIGR00874 136 EGIRAAEELEKE-------GIHCNLTLLFSFVQAIACAEAKVTLISPFVGRILDWYKAATGKK-EYSIEEDPGVASVKKI 207 (317)
T ss_pred HHHHHHHHHHHC-------CCceeeeeecCHHHHHHHHHcCCCEEEeecchHhHhhhhccCcc-ccccccCchHHHHHHH
Confidence 366555443322 34443333444444444 788889999999977422211000 111 123457788
Q ss_pred HHHHHHcCCCc----------hhhhhhcccccccccccccccccccCCCCCCHHHHHHhhccCCCCCC---CCccccCCC
Q 024025 128 ISSFSAQGLSL----------KNMVALAGGHTVGKARCTSFRGHIYNDSNIDTSFARSLQQRCPRRGN---DNVLANLDR 194 (273)
Q Consensus 128 ~~~F~~~Gl~~----------~d~VaL~GaHtiG~~hc~~f~~Rl~~dp~~d~~~~~~L~~~Cp~~~~---~~~~~~~D~ 194 (273)
...|++.|+.. +++.+|.|+|.+ ++.|....+|...-.+-.. .......+
T Consensus 208 ~~~~k~~g~~T~Im~ASfRn~~qv~~laG~d~~----------------Ti~p~ll~~L~~~~~~~~~~l~~~~~~~~~- 270 (317)
T TIGR00874 208 YNYYKKHGYPTEVMGASFRNKEEILALAGCDRL----------------TISPALLDELKESTGPVERKLDPESAKKVD- 270 (317)
T ss_pred HHHHHHcCCCcEEEeeccCCHHHHHHHHCCCeE----------------eCCHHHHHHHHhCCCCcCccCCcccccccc-
Confidence 88888888754 455556665543 3566666666443211000 00000011
Q ss_pred CCCcccChHHHHHHHhcCCccccchhcccCcchHHHHHHHhhChhHHHHH
Q 024025 195 QTPTCFDNLYYKNLLNKKGLLHSDQELFNGNSADFLVKRYAASISVFFKD 244 (273)
Q Consensus 195 ~tp~~FDn~Yy~~l~~~~glL~SD~~L~~d~~t~~~V~~yA~d~~~F~~~ 244 (273)
..|..+|...|+-.++..++ .. ..+..-++.|+.|+.....-
T Consensus 271 ~~~~~~~e~~fr~~~~~d~m-------a~-ekl~~gir~F~~d~~~Le~~ 312 (317)
T TIGR00874 271 KQPIILDESEFRFLHNEDAM-------AT-EKLAEGIRKFAADQEKLEKL 312 (317)
T ss_pred ccCCCCCHHHHHHHhCCCcc-------hH-HHHHHHHHHHHHHHHHHHHH
Confidence 23456788888744443322 11 23455667777776655443
No 23
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=80.82 E-value=15 Score=35.59 Aligned_cols=88 Identities=15% Similarity=0.229 Sum_probs=52.3
Q ss_pred CccHHHHHHHhhhcccc---cCCcceeecCCCCCCCccccccccCCCCCCCC----CHHHHHHHHHHcCCCc--------
Q 024025 74 VVSCADILAIAARDSVV---FGGPSWKVRLGRRDSTTASRAAANTSIPPPTS----NLSALISSFSAQGLSL-------- 138 (273)
Q Consensus 74 ~VScADiialAar~Av~---~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~----~~~~l~~~F~~~Gl~~-------- 138 (273)
.|.|-=.+.+....|+. +|-..+..+.||.|...-.... ...+|...+ .+.++...|+..|+..
T Consensus 154 GI~~n~TlvFS~~QA~aaaeAGa~~ISPfVgRi~dw~~~~~g-~~~~~~~~dpGv~~v~~i~~~~~~~~~~T~Im~ASfR 232 (391)
T PRK12309 154 GIHCNLTLLFGFHQAIACAEAGVTLISPFVGRILDWYKKETG-RDSYPGAEDPGVQSVTQIYNYYKKFGYKTEVMGASFR 232 (391)
T ss_pred CCceeeeeecCHHHHHHHHHcCCCEEEeecchhhhhhhhccC-CCccccccchHHHHHHHHHHHHHhcCCCcEEEecccC
Confidence 44444444555555554 7888899999999885332111 112443322 4778888888888643
Q ss_pred --hhhhhhcccccccccccccccccccCCCCCCHHHHHHhhc
Q 024025 139 --KNMVALAGGHTVGKARCTSFRGHIYNDSNIDTSFARSLQQ 178 (273)
Q Consensus 139 --~d~VaL~GaHtiG~~hc~~f~~Rl~~dp~~d~~~~~~L~~ 178 (273)
.++..|.|+|.+ ++.|....+|..
T Consensus 233 n~~~v~~laG~d~~----------------Ti~p~ll~~L~~ 258 (391)
T PRK12309 233 NIGEIIELAGCDLL----------------TISPKLLEQLRS 258 (391)
T ss_pred CHHHHHHHHCCCee----------------eCCHHHHHHHHh
Confidence 455566666543 356666666655
No 24
>cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB. The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution.
Probab=77.42 E-value=7.7 Score=36.40 Aligned_cols=75 Identities=15% Similarity=0.165 Sum_probs=43.2
Q ss_pred CccHHHHHHHhhhcccc---cCCcceeecCCCCCCCccccccccCCCCC----CCCCHHHHHHHHHHcCCCc--------
Q 024025 74 VVSCADILAIAARDSVV---FGGPSWKVRLGRRDSTTASRAAANTSIPP----PTSNLSALISSFSAQGLSL-------- 138 (273)
Q Consensus 74 ~VScADiialAar~Av~---~GGP~~~v~~GR~D~~~s~~~~~~~~lP~----p~~~~~~l~~~F~~~Gl~~-------- 138 (273)
.|+|-=.+.+....|+. +|-..+..+.||.|-..-..... ...+. +-..+.++...|++.|+..
T Consensus 148 GI~vn~TlvFS~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~-~~~~~~~d~Gv~~v~~i~~~~~~~~~~T~vmaASfR 226 (313)
T cd00957 148 GIHCNLTLLFSFAQAVACAEAGVTLISPFVGRILDWYKKHSGD-KAYTAEEDPGVASVKKIYNYYKKFGYKTKVMGASFR 226 (313)
T ss_pred CCceeeeeecCHHHHHHHHHcCCCEEEeecchHHHhhhhcccc-ccCCccCCcHHHHHHHHHHHHHHcCCCcEEEecccC
Confidence 45554444555555544 68788999999998652211000 01111 1234778888888889864
Q ss_pred --hhhhhhccccc
Q 024025 139 --KNMVALAGGHT 149 (273)
Q Consensus 139 --~d~VaL~GaHt 149 (273)
.++..|.|+|.
T Consensus 227 n~~~v~~laG~d~ 239 (313)
T cd00957 227 NIGQILALAGCDY 239 (313)
T ss_pred CHHHHHHHhCCCe
Confidence 45555555553
No 25
>PF11895 DUF3415: Domain of unknown function (DUF3415); InterPro: IPR024589 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Peroxidases are found in bacteria, fungi, plants and animals. Fungal ligninases are extracellular haem enzymes involved in the degradation of lignin. They include lignin peroxidases (LiPs), manganese-dependent peroxidases (MnPs) and versatile peroxidases, which combine the substrate-specificity characteristics of the other two []. In MnP, Mn2+ serves as the reducing substrate []. It is commonly thought that the plant polymer lignin is the second most abundant organic compound on Earth, exceeded only by cellulose. Higher plants synthesise vast quantities of insoluble macromolecules, including lignins. Lignin is an amorphous three-dimensional aromatic biopolymer composed of oxyphenylpropane units. Biodegradation of lignins is slow - it is probable that their decomposition is the rate-limiting step in the biospheric carbon-oxygen cycle, which is mediated almost entirely by the catabolic activities of microorganisms. The white-rot fungi are able extensively to decompose all the important structural components of wood, including both cellulose and lignin. Under the proper environmental conditions, white-rot fungi completely degrade all structural components of lignin, with ultimate formation of CO2 and H2O. The first step in lignin degradation is depolymerisation, catalysed by the LiPs (ligninases). LiPs are secreted, along with hydrogen peroxide (H2O2), by white-rot fungi under conditions of nutrient limitation. The enzymes are not only important in lignin biodegradation, but are also potentially valuable in chemical waste disposal because of their ability to degrade environmental pollutants []. To date, 3D structures have been determined for LiP [] and MnP [] from Phanerochaete chrysosporium (White-rot fungus), and for the fungal peroxidase from Arthromyces ramosus []. All these proteins share the same architecture and consist of 2 all-alpha domains, between which is embedded the haem group. The helical topography of LiPs is nearly identical to that of yeast cytochrome c peroxidase (CCP) [], despite the former having 4 disulphide bonds, which are absent in CCP (MnP has an additional disulphide bond at the C terminus). This uncharacterised C-terminal domain is found in fungal ligninases. It is about 80 amino acids in length and associated with Pfam:PF00141.; PDB: 1B85_B 1B82_A 1B80_A 1YYG_A 1YZP_A 1MNP_A 1MN1_A 1YZR_A 1MN2_A 3M8M_A ....
Probab=64.76 E-value=5.9 Score=29.70 Aligned_cols=19 Identities=16% Similarity=0.142 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHhhcCCCC
Q 024025 240 VFFKDFARGMIKMGNIKPL 258 (273)
Q Consensus 240 ~F~~~Fa~am~Km~~lgv~ 258 (273)
+..+.|..||.||+.||..
T Consensus 2 ~m~~~F~~am~KlavLG~d 20 (80)
T PF11895_consen 2 KMQSAFKAAMAKLAVLGHD 20 (80)
T ss_dssp HHHHHHHHHHHHHCTTTS-
T ss_pred hHHHHHHHHHHHHHHhcCC
Confidence 4678999999999999863
No 26
>cd00439 Transaldolase Transaldolase. Enzymes found in the non-oxidative branch of the pentose phosphate pathway, that catalyze the reversible transfer of a dihydroxyacetone group from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. They are members of the class I aldolases, who are characterized by using a Schiff-base mechanism for stabilization of the reaction intermediates.
Probab=47.91 E-value=12 Score=33.82 Aligned_cols=76 Identities=9% Similarity=0.027 Sum_probs=42.4
Q ss_pred hhHHHHHHHHHHHHhhCCCCccHHHHHHHhhhcccc---cCCcceeecCCCCCCCccccccccCCCCCCC--CC---HHH
Q 024025 55 RGFNVVDQIKANLEKACPRVVSCADILAIAARDSVV---FGGPSWKVRLGRRDSTTASRAAANTSIPPPT--SN---LSA 126 (273)
Q Consensus 55 ~g~~~i~~iK~~le~~cp~~VScADiialAar~Av~---~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~--~~---~~~ 126 (273)
.|++.+..+++. .|++-=.+.+....|+. +|...+.++.||.|...-...... . +++. .. +.+
T Consensus 127 ~Gl~A~~~L~~~-------GI~vn~T~vfs~~Qa~~aa~Aga~~ispfvgRid~~~~~~~~~~-~-~d~~~~~gi~~~~~ 197 (252)
T cd00439 127 EGIPAIKDLIAA-------GISVNVTLIFSIAQYEAVADAGTSVASPFVSRIDTLMDKMLEQI-G-LDLRGKAGVAQVTL 197 (252)
T ss_pred HHHHHHHHHHHC-------CCceeeeeecCHHHHHHHHHcCCCEEEEeccHHHHHhhhhcccc-c-cccccCcHHHHHHH
Confidence 467666555432 34443334445444444 677889999999998654321111 1 2222 33 446
Q ss_pred HHHHHHHcCCCch
Q 024025 127 LISSFSAQGLSLK 139 (273)
Q Consensus 127 l~~~F~~~Gl~~~ 139 (273)
+.+.|...|...+
T Consensus 198 ~~~~~~~~~~~tk 210 (252)
T cd00439 198 AYKLYKQKFKKQR 210 (252)
T ss_pred HHHHHHHhCCCCe
Confidence 6677777776543
No 27
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=35.01 E-value=12 Score=33.06 Aligned_cols=70 Identities=14% Similarity=0.200 Sum_probs=41.4
Q ss_pred hhHHHHHHHHHHHHhhCCCCccHHHHHHHhhhcccc---cCCcceeecCCCCCCCccccccccCCCCCCCCCHHHHHHHH
Q 024025 55 RGFNVVDQIKANLEKACPRVVSCADILAIAARDSVV---FGGPSWKVRLGRRDSTTASRAAANTSIPPPTSNLSALISSF 131 (273)
Q Consensus 55 ~g~~~i~~iK~~le~~cp~~VScADiialAar~Av~---~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F 131 (273)
.|++++..++++ .|.+--...+....|+. +|--++..+.||.|..-- ++..-+.++.+.+
T Consensus 89 ~Gl~A~~~L~~~-------Gi~v~~T~vfs~~Qa~~Aa~aGa~yispyvgRi~d~g~----------dg~~~v~~~~~~~ 151 (213)
T TIGR00875 89 EGLKAVKILKKE-------GIKTNVTLVFSAAQALLAAKAGATYVSPFVGRLDDIGG----------DGMKLIEEVKTIF 151 (213)
T ss_pred HHHHHHHHHHHC-------CCceeEEEecCHHHHHHHHHcCCCEEEeecchHHHcCC----------CHHHHHHHHHHHH
Confidence 477777665543 22222222333333333 566678999999987421 1334467888888
Q ss_pred HHcCCCchhh
Q 024025 132 SAQGLSLKNM 141 (273)
Q Consensus 132 ~~~Gl~~~d~ 141 (273)
+..|++.+=|
T Consensus 152 ~~~~~~tkIl 161 (213)
T TIGR00875 152 ENHAPDTEVI 161 (213)
T ss_pred HHcCCCCEEE
Confidence 8889887633
No 28
>KOG0400 consensus 40S ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
Probab=34.86 E-value=22 Score=29.26 Aligned_cols=33 Identities=18% Similarity=0.428 Sum_probs=26.6
Q ss_pred CCHHHHHHHHHHcCCCchhhhhhc-ccccccccc
Q 024025 122 SNLSALISSFSAQGLSLKNMVALA-GGHTVGKAR 154 (273)
Q Consensus 122 ~~~~~l~~~F~~~Gl~~~d~VaL~-GaHtiG~~h 154 (273)
+++.+.+-.|+++||++.++=+++ -+|-||+++
T Consensus 31 ddvkeqI~K~akKGltpsqIGviLRDshGi~q~r 64 (151)
T KOG0400|consen 31 DDVKEQIYKLAKKGLTPSQIGVILRDSHGIGQVR 64 (151)
T ss_pred HHHHHHHHHHHHcCCChhHceeeeecccCcchhh
Confidence 456666778999999999985555 799999886
No 29
>PRK01362 putative translaldolase; Provisional
Probab=33.21 E-value=16 Score=32.43 Aligned_cols=71 Identities=13% Similarity=0.213 Sum_probs=41.9
Q ss_pred hhHHHHHHHHHHHHhhCCCCccHHHHHHHhhhcccc---cCCcceeecCCCCCCCccccccccCCCCCCCCCHHHHHHHH
Q 024025 55 RGFNVVDQIKANLEKACPRVVSCADILAIAARDSVV---FGGPSWKVRLGRRDSTTASRAAANTSIPPPTSNLSALISSF 131 (273)
Q Consensus 55 ~g~~~i~~iK~~le~~cp~~VScADiialAar~Av~---~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F 131 (273)
.|++++..++++ .|++--...+....|+. .|--++..+.||.|-..- ++..-+.++.+.+
T Consensus 89 ~G~~a~~~L~~~-------Gi~v~~T~vfs~~Qa~~Aa~aGa~yispyvgRi~d~g~----------dg~~~i~~~~~~~ 151 (214)
T PRK01362 89 EGLKAVKALSKE-------GIKTNVTLIFSANQALLAAKAGATYVSPFVGRLDDIGT----------DGMELIEDIREIY 151 (214)
T ss_pred HHHHHHHHHHHC-------CCceEEeeecCHHHHHHHHhcCCcEEEeecchHhhcCC----------CHHHHHHHHHHHH
Confidence 477777665543 22222222333444433 566678999999986421 2344567888888
Q ss_pred HHcCCCchhhh
Q 024025 132 SAQGLSLKNMV 142 (273)
Q Consensus 132 ~~~Gl~~~d~V 142 (273)
...|++.+=|+
T Consensus 152 ~~~~~~tkila 162 (214)
T PRK01362 152 DNYGFDTEIIA 162 (214)
T ss_pred HHcCCCcEEEE
Confidence 88887765443
No 30
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=27.22 E-value=31 Score=30.32 Aligned_cols=37 Identities=16% Similarity=0.192 Sum_probs=26.3
Q ss_pred cCCcceeecCCCCCCCccccccccCCCCCCCCCHHHHHHHHHHcCCC
Q 024025 91 FGGPSWKVRLGRRDSTTASRAAANTSIPPPTSNLSALISSFSAQGLS 137 (273)
Q Consensus 91 ~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~ 137 (273)
+|..++..++||.|...- ++..-+.++.+.+.+.|+.
T Consensus 121 AGA~yvsP~vgR~~~~g~----------dg~~~i~~i~~~~~~~~~~ 157 (211)
T cd00956 121 AGATYVSPFVGRIDDLGG----------DGMELIREIRTIFDNYGFD 157 (211)
T ss_pred cCCCEEEEecChHhhcCC----------CHHHHHHHHHHHHHHcCCC
Confidence 566778889999887422 2334467888888888876
No 31
>cd07922 CarBa CarBa is the A subunit of 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. CarBa is the A subunit of 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. 2-aminophenol 1,6-dioxygenase is a key enzyme in the carbazole degradation pathway isolated from bacterial strains with carbazole degradation ability. The enzyme is a heterotetramer composed of two A and two B subunits. CarB belongs to the class III extradiol dioxygenase family, composed of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Although the enzyme was originally isolated as a meta-cleavage enzyme for 2'-aminobiphenyl-2,3-diol involved in carbazole degradation, the enzyme has also shown high specificity for 2,3-dihydroxybiphenyl.
Probab=25.11 E-value=48 Score=24.90 Aligned_cols=34 Identities=18% Similarity=0.383 Sum_probs=21.1
Q ss_pred cccCcchHHHHHHHhhChhHHHHHHH-----------HHHHHhhcCCC
Q 024025 221 LFNGNSADFLVKRYAASISVFFKDFA-----------RGMIKMGNIKP 257 (273)
Q Consensus 221 L~~d~~t~~~V~~yA~d~~~F~~~Fa-----------~am~Km~~lgv 257 (273)
|.+||+. .++|..|++.+++.+. .-+.+|..+||
T Consensus 13 L~~dp~~---rerF~~DPea~~~~~gLt~eE~~aL~~~D~~~L~~lGv 57 (81)
T cd07922 13 LFKDPGL---IERFQDDPSAVFEEYGLTPAERAALREGTFGALTSIGV 57 (81)
T ss_pred HhcCHHH---HHHHHHCHHHHHHHcCCCHHHHHHHHccCHHHHHHcCC
Confidence 5555544 3667777777777664 34566666665
No 32
>PLN02161 beta-amylase
Probab=23.41 E-value=1e+02 Score=31.06 Aligned_cols=34 Identities=24% Similarity=0.357 Sum_probs=23.2
Q ss_pred HHHHHhhChhHHHHHHHHHHHHhh-----cCCCCCCCCCcccc
Q 024025 230 LVKRYAASISVFFKDFARGMIKMG-----NIKPLTGSAGQIRI 267 (273)
Q Consensus 230 ~V~~yA~d~~~F~~~Fa~am~Km~-----~lgv~tg~~GeIR~ 267 (273)
-++.|.. |.+.|...|.-+. +|.|=.|+.||.|-
T Consensus 234 plq~Y~D----fm~SFr~~F~~~~~~~I~eI~VGlGP~GELRY 272 (531)
T PLN02161 234 AVQCYED----FMLSFSTKFEPYIGNVIEEISIGLGPSGELRY 272 (531)
T ss_pred HHHHHHH----HHHHHHHHHHHHhcCceEEEEeccccCccccC
Confidence 4677743 7777777776654 44555689999995
No 33
>PF04225 OapA: Opacity-associated protein A LysM-like domain; InterPro: IPR007340 This entry includes the Haemophilus influenzae opacity-associated protein. This protein is required for efficient nasopharyngeal mucosal colonization, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [].; PDB: 2GU1_A.
Probab=21.70 E-value=55 Score=24.50 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=17.7
Q ss_pred HHHHHHHHHcCCCchhhhhhcccc
Q 024025 125 SALISSFSAQGLSLKNMVALAGGH 148 (273)
Q Consensus 125 ~~l~~~F~~~Gl~~~d~VaL~GaH 148 (273)
+.|-..|.+.||+..||-.|+-+.
T Consensus 11 DtLs~iF~~~gls~~dl~~v~~~~ 34 (85)
T PF04225_consen 11 DTLSTIFRRAGLSASDLYAVLEAD 34 (85)
T ss_dssp --HHHHHHHTT--HHHHHHHHHHG
T ss_pred CcHHHHHHHcCCCHHHHHHHHhcc
Confidence 678899999999999999998654
No 34
>PF08782 c-SKI_SMAD_bind: c-SKI Smad4 binding domain; InterPro: IPR014890 c-SKI is an oncoprotein that inhibits TGF-beta signalling through interaction with Smad proteins []. This protein binds to Smad4 [].; GO: 0005634 nucleus; PDB: 1MR1_C.
Probab=21.29 E-value=26 Score=27.20 Aligned_cols=14 Identities=29% Similarity=0.434 Sum_probs=9.4
Q ss_pred hhccccCCCCCcccc
Q 024025 20 FQLNDDNQGCDGSVL 34 (273)
Q Consensus 20 ~FHDc~v~GcDgSil 34 (273)
.+|+|| +||.|+..
T Consensus 4 V~HeC~-g~c~G~f~ 17 (96)
T PF08782_consen 4 VYHECF-GGCRGSFI 17 (96)
T ss_dssp EEE-ST-T-EEEEE-
T ss_pred eEEeec-CccceEec
Confidence 379998 89999986
No 35
>PLN00017 photosystem I reaction centre subunit VI; Provisional
Probab=20.44 E-value=46 Score=25.23 Aligned_cols=20 Identities=40% Similarity=0.597 Sum_probs=15.7
Q ss_pred HhhChhHHHHHHHHHHHHhh
Q 024025 234 YAASISVFFKDFARGMIKMG 253 (273)
Q Consensus 234 yA~d~~~F~~~Fa~am~Km~ 253 (273)
|-..|.+||+.|+..+.|=+
T Consensus 38 Y~~~QskFFe~~A~~~tkR~ 57 (90)
T PLN00017 38 YNPLQSKFFETFAAPFTKRG 57 (90)
T ss_pred CChHHHHHHHHHhhhhhHHH
Confidence 55568999999998887744
Done!