BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024026
(273 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FOV|A Chain A, Glutaredoxin 3 From Escherichia Coli In The Fully Oxidized
Form
Length = 82
Score = 33.5 bits (75), Expect = 0.12, Method: Composition-based stats.
Identities = 11/46 (23%), Positives = 25/46 (54%)
Query: 70 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLG 115
++++ E CP+C R + ++ +S + P + + EM++R G
Sbjct: 3 VEIYTKETCPYCHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSG 48
>pdb|4G10|A Chain A, Ligg From Sphingobium Sp. Syk-6 Is Related To The
Glutathione Transferase Omega Class
Length = 265
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Query: 67 PTRLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDP 126
P L ++ CPF RV + L + R ++ + GG P L+D
Sbjct: 4 PQELTIYHIPGCPFSERVEIXLELKGLRXKDVEIDISKPRPDWLLAKTGGTTALP-LLDV 62
Query: 127 NTGVSMYESGDIVNYLFQQY 146
G S+ ES I+ YL Q+Y
Sbjct: 63 ENGESLKESXVILRYLEQRY 82
>pdb|3VK9|A Chain A, Crystal Structure Of Delta-Class Glutathione Transferase
From Silkmoth
pdb|3VK9|B Chain B, Crystal Structure Of Delta-Class Glutathione Transferase
From Silkmoth
pdb|3VK9|C Chain C, Crystal Structure Of Delta-Class Glutathione Transferase
From Silkmoth
pdb|3VK9|D Chain D, Crystal Structure Of Delta-Class Glutathione Transferase
From Silkmoth
Length = 216
Score = 31.2 bits (69), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 105 IRHREMVR----RLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYGKGRS 151
+ H E ++ +L + P L+D G+S++ES I+ YL +Y KG S
Sbjct: 35 LHHGEQLKPEYLKLNPQHTVPTLVD--DGLSIWESRAIITYLVNKYAKGSS 83
>pdb|2KLX|A Chain A, Solution Structure Of Glutaredoxin From Bartonella
Henselae Str. Houston
Length = 89
Score = 30.8 bits (68), Expect = 0.78, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 18/67 (26%)
Query: 72 LFEFEACPFCRRVREAI-------TELDLSVEVFPCPKGSIRHREMVRRLGGKEQFP--F 122
L+ CP+C+R R+ + T++D S S+R +EMV+R G+ FP F
Sbjct: 10 LYTRPNCPYCKRARDLLDKKGVKYTDIDAST--------SLR-QEMVQRANGRNTFPQIF 60
Query: 123 LIDPNTG 129
+ D + G
Sbjct: 61 IGDYHVG 67
>pdb|2X8C|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
With The Reduced C-Terminal End
pdb|2X8C|B Chain B, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
With The Reduced C-Terminal End
pdb|2X8G|A Chain A, Oxidized Thioredoxin Glutathione Reductase From
Schistosoma Mansoni
pdb|2X8H|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
In Complex With Gsh
pdb|2X99|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
In Complex With Nadph
Length = 598
Score = 30.8 bits (68), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 7/90 (7%)
Query: 175 GMTLWEKARPDPPSKKLELFSYENNPYARIVREALCELELPYI---LQNVGDGSSRTKLL 231
G + W + D S + LFS PY + V++ L E ++ + L + +GS+ K L
Sbjct: 6 GTSQWLRKTVD--SAAVILFSKTTCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCL 63
Query: 232 VDITGSKEVPYLIDPNTSTQIGDYKKILSY 261
+ + VP + IGD + +L Y
Sbjct: 64 ASFSKIETVPQMF--VRGKFIGDSQTVLKY 91
>pdb|3H4K|A Chain A, Crystal Structure Of The Wild Type Thioredoxin Glutatione
Reductase From Schistosoma Mansoni In Complex With
Auranofin
Length = 598
Score = 30.8 bits (68), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 7/90 (7%)
Query: 175 GMTLWEKARPDPPSKKLELFSYENNPYARIVREALCELELPYI---LQNVGDGSSRTKLL 231
G + W + D S + LFS PY + V++ L E ++ + L + +GS+ K L
Sbjct: 6 GTSQWLRKTVD--SAAVILFSKTTCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCL 63
Query: 232 VDITGSKEVPYLIDPNTSTQIGDYKKILSY 261
+ + VP + IGD + +L Y
Sbjct: 64 ASFSKIETVPQMF--VRGKFIGDSQTVLKY 91
>pdb|2V6O|A Chain A, Structure Of Schistosoma Mansoni Thioredoxin-Glutathione
Reductase (Smtgr)
Length = 596
Score = 30.8 bits (68), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 7/90 (7%)
Query: 175 GMTLWEKARPDPPSKKLELFSYENNPYARIVREALCELELPYI---LQNVGDGSSRTKLL 231
G + W + D S + LFS PY + V++ L E ++ + L + +GS+ K L
Sbjct: 6 GTSQWLRKTVD--SAAVILFSKTTCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCL 63
Query: 232 VDITGSKEVPYLIDPNTSTQIGDYKKILSY 261
+ + VP + IGD + +L Y
Sbjct: 64 ASFSKIETVPQMF--VRGKFIGDSQTVLKY 91
>pdb|1Z9H|A Chain A, Microsomal Prostaglandin E Synthase Type-2
pdb|1Z9H|B Chain B, Microsomal Prostaglandin E Synthase Type-2
pdb|1Z9H|C Chain C, Microsomal Prostaglandin E Synthase Type-2
pdb|1Z9H|D Chain D, Microsomal Prostaglandin E Synthase Type-2
pdb|2PBJ|A Chain A, Gsh-Heme Bound Microsomal Prostaglandin E Synthase
pdb|2PBJ|B Chain B, Gsh-Heme Bound Microsomal Prostaglandin E Synthase
pdb|2PBJ|C Chain C, Gsh-Heme Bound Microsomal Prostaglandin E Synthase
pdb|2PBJ|D Chain D, Gsh-Heme Bound Microsomal Prostaglandin E Synthase
Length = 290
Score = 30.8 bits (68), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 66 SPTRLQLFEFEACPFCRRVREAITELDL---SVEVFPCPKGSIR 106
S +L L++++ CPFC +VR + L VEV P + I+
Sbjct: 11 SRLQLTLYQYKTCPFCSKVRAFLDFHALPYQVVEVNPVLRAEIK 54
>pdb|2EJW|A Chain A, Homoserine Dehydrogenase From Thermus Thermophilus Hb8
pdb|2EJW|B Chain B, Homoserine Dehydrogenase From Thermus Thermophilus Hb8
pdb|2EJW|E Chain E, Homoserine Dehydrogenase From Thermus Thermophilus Hb8
pdb|2EJW|F Chain F, Homoserine Dehydrogenase From Thermus Thermophilus Hb8
Length = 332
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 76/191 (39%), Gaps = 29/191 (15%)
Query: 58 TQEISNSDSPTRLQLFEFEA-CPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGG 116
+ + ++P RL L EA P + + E S+ F +G I H V + G
Sbjct: 71 VEAMGGVEAPLRLVLPALEAGIPLITANKALLAEAWESLRPF-AEEGLIYHEASV--MAG 127
Query: 117 KEQFPFLIDPNTGVSMYESGDIVN----YLFQQYGKGRSPSTGLLESTLITGWM---PTI 169
FL + G + E I+N Y+ Q+ KGR+ + LLE+ + G+ PT+
Sbjct: 128 TPALSFL-ETLRGSELLELHGILNGTTLYILQEMEKGRTYAEALLEAQRL-GYAEADPTL 185
Query: 170 ----FRAGRGMTLWEKARPDPPSKKLELFSYENNPYARIVREALCELELPYILQNVGDGS 225
A +TL + DP P+A + + + L P +LQ
Sbjct: 186 DVEGIDAAHKLTLLARLLVDP-----------GFPFAEVEAQGIARLT-PEVLQKAEARG 233
Query: 226 SRTKLLVDITG 236
R +L+ + G
Sbjct: 234 ERVRLVASLFG 244
>pdb|1F6F|A Chain A, Crystal Structure Of The Ternary Complex Between Ovine
Placental Lactogen And The Extracellular Domain Of The
Rat Prolactin Receptor
Length = 199
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 106 RHREMVRRLGGKEQFPF--LIDPNTGVSMYES---GDIVNYLFQQYGKG 149
+H R GK Q P L D T V+ Y S G++VN +QYG+G
Sbjct: 2 QHPPYCRNQPGKCQIPLQSLFDRATTVANYNSKLAGEMVNRFDEQYGQG 50
>pdb|3GRX|A Chain A, Nmr Structure Of Escherichia Coli Glutaredoxin
3-Glutathione Mixed Disulfide Complex, 20 Structures
Length = 82
Score = 29.6 bits (65), Expect = 2.0, Method: Composition-based stats.
Identities = 10/46 (21%), Positives = 24/46 (52%)
Query: 70 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLG 115
++++ E CP+ R + ++ +S + P + + EM++R G
Sbjct: 3 VEIYTKETCPYSHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSG 48
>pdb|1JHB|A Chain A, Human Glutaredoxin In Fully Reduced Form, Nmr, 20
Structures
Length = 106
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 58 TQEISNSD-SPTRLQLFEFEACPFCRRVREAITEL 91
QE N P ++ +F CP+CRR +E +++L
Sbjct: 2 AQEFVNCKIQPGKVVVFIKPTCPYCRRAQEILSQL 36
>pdb|3RS8|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima In Complex With
Adp-Ribose
pdb|3RS9|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima In Complex With
P1,P3-Di(Adenosine-5') Triphosphate
pdb|3RSF|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima In Complex With
P1,P4-Di(Adenosine-5') Tetraphosphate
pdb|3RSQ|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With Nadh
pdb|3RSS|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With Nadp
pdb|3RT7|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima In Complex With
Adp-Glucose
pdb|3RT9|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With
Coenzyme A
pdb|3RTA|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With Acetyl
Coenzyme A
pdb|3RTC|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With Nad And
Atp.
pdb|3RTD|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With Nadh
And Adp.
pdb|3RTE|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With Nadp
And Atp.
pdb|3RTG|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With
Coenzyme A And Atp
pdb|3RU3|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With Nadph
And Atp.
pdb|3RRB|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima In Complex With Amp
pdb|3RRE|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima In Complex With Adp
pdb|3RRF|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima In Complex With Atp
pdb|3RRJ|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima In Complex With
P1,P5-Di(Adenosine-5') Pentaphosphate
pdb|3RSG|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With Nad.
pdb|3RTB|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With
Adenosine-3'-5'-Diphosphate
pdb|3RU2|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With Nadph
Length = 502
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 118 EQFPFLIDPNTGVSMYESGDIVNYLFQQY-GKGRSPSTGLLESTLITGWMPTIFRAG-RG 175
E+ F I NTG+S SGD++ + + +G SP S + G+ +F RG
Sbjct: 424 EKTLFNITGNTGLSKGGSGDVLTGMIAGFIAQGLSPLEASTVSVYLHGFAAELFEQDERG 483
Query: 176 MTLWEKARPDPPS 188
+T E R P +
Sbjct: 484 LTASELLRLIPEA 496
>pdb|1PN9|A Chain A, Crystal Structure Of An Insect Delta-class Glutathione S-
Transferase From A Ddt-resistant Strain Of The Malaria
Vector Anopheles Gambiae
pdb|1PN9|B Chain B, Crystal Structure Of An Insect Delta-class Glutathione S-
Transferase From A Ddt-resistant Strain Of The Malaria
Vector Anopheles Gambiae
Length = 209
Score = 27.7 bits (60), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 81 CRRVR--EAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDI 138
CR V+ A ++L++++ KG E ++ L + P L+D G +++ES I
Sbjct: 12 CRAVQMTAAAVGVELNLKLTDLMKGEHMKPEFLK-LNPQHCIPTLVD--NGFALWESRAI 68
Query: 139 VNYLFQQYGK 148
YL ++YGK
Sbjct: 69 QIYLAEKYGK 78
>pdb|1KTE|A Chain A, Crystal Structure Of Thioltransferase At 2.2 Angstrom
Resolution
Length = 105
Score = 27.3 bits (59), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 9/31 (29%), Positives = 20/31 (64%)
Query: 61 ISNSDSPTRLQLFEFEACPFCRRVREAITEL 91
+++ P ++ +F CPFCR+ +E +++L
Sbjct: 5 VNSKIQPGKVVVFIKPTCPFCRKTQELLSQL 35
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,199,809
Number of Sequences: 62578
Number of extensions: 339691
Number of successful extensions: 776
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 766
Number of HSP's gapped (non-prelim): 23
length of query: 273
length of database: 14,973,337
effective HSP length: 97
effective length of query: 176
effective length of database: 8,903,271
effective search space: 1566975696
effective search space used: 1566975696
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)