Query 024026
Match_columns 273
No_of_seqs 417 out of 2382
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 08:22:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024026.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024026hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03041 GST_N_2GST_N GST_N fam 99.9 2E-21 4.4E-26 140.6 9.2 77 69-146 1-77 (77)
2 PRK09481 sspA stringent starva 99.9 4.9E-21 1.1E-25 164.3 12.1 144 68-220 9-152 (211)
3 PRK15113 glutathione S-transfe 99.8 6.2E-20 1.4E-24 157.7 13.4 99 67-168 3-108 (214)
4 PRK11752 putative S-transferas 99.8 4E-20 8.6E-25 164.1 11.7 170 35-219 18-202 (264)
5 PRK13972 GSH-dependent disulfi 99.8 7.3E-20 1.6E-24 157.3 12.3 144 69-219 1-156 (215)
6 COG0625 Gst Glutathione S-tran 99.8 9.4E-20 2E-24 156.1 10.8 183 70-266 1-193 (211)
7 KOG0868 Glutathione S-transfer 99.8 1E-19 2.2E-24 147.6 9.6 149 69-220 5-159 (217)
8 PLN02473 glutathione S-transfe 99.8 5.6E-19 1.2E-23 151.4 11.8 145 69-219 2-159 (214)
9 PRK10542 glutathionine S-trans 99.8 1.9E-18 4.1E-23 146.5 10.7 145 70-220 1-149 (201)
10 PF13417 GST_N_3: Glutathione 99.8 1.3E-18 2.8E-23 125.1 7.7 74 72-149 1-74 (75)
11 TIGR01262 maiA maleylacetoacet 99.8 7E-18 1.5E-22 144.0 11.3 146 71-220 1-156 (210)
12 cd03045 GST_N_Delta_Epsilon GS 99.8 3.3E-18 7.1E-23 122.2 7.8 72 70-144 1-74 (74)
13 cd03052 GST_N_GDAP1 GST_N fami 99.7 3.8E-18 8.2E-23 122.2 7.4 71 70-143 1-73 (73)
14 cd03048 GST_N_Ure2p_like GST_N 99.7 7.5E-18 1.6E-22 122.8 8.9 78 69-148 1-81 (81)
15 cd03059 GST_N_SspA GST_N famil 99.7 8E-18 1.7E-22 119.8 8.5 73 70-146 1-73 (73)
16 PLN02395 glutathione S-transfe 99.7 2.5E-17 5.5E-22 141.2 12.0 145 69-220 2-159 (215)
17 KOG0406 Glutathione S-transfer 99.7 2.7E-17 5.8E-22 140.9 11.9 97 68-168 8-106 (231)
18 cd03037 GST_N_GRX2 GST_N famil 99.7 1.6E-17 3.5E-22 117.9 8.1 71 70-144 1-71 (71)
19 KOG0867 Glutathione S-transfer 99.7 3.8E-17 8.2E-22 141.8 11.4 185 69-266 2-198 (226)
20 cd03060 GST_N_Omega_like GST_N 99.7 2.8E-17 6E-22 116.8 8.4 69 71-142 2-70 (71)
21 cd03058 GST_N_Tau GST_N family 99.7 2.8E-17 6E-22 117.7 8.4 73 70-146 1-74 (74)
22 cd03040 GST_N_mPGES2 GST_N fam 99.7 4.6E-17 9.9E-22 117.4 9.1 75 69-147 1-77 (77)
23 PRK10357 putative glutathione 99.7 7.4E-17 1.6E-21 137.1 10.8 138 70-211 1-143 (202)
24 cd03050 GST_N_Theta GST_N fami 99.7 6.2E-17 1.4E-21 116.4 8.4 74 70-146 1-76 (76)
25 PRK10387 glutaredoxin 2; Provi 99.7 6.7E-17 1.4E-21 138.0 9.9 92 70-168 1-92 (210)
26 cd03051 GST_N_GTT2_like GST_N 99.7 4.9E-17 1.1E-21 115.7 7.6 72 70-143 1-74 (74)
27 cd03061 GST_N_CLIC GST_N famil 99.7 6E-17 1.3E-21 120.3 8.0 70 76-149 20-89 (91)
28 cd03056 GST_N_4 GST_N family, 99.7 5.7E-17 1.2E-21 115.2 7.6 71 70-143 1-73 (73)
29 cd03044 GST_N_EF1Bgamma GST_N 99.7 7.5E-17 1.6E-21 115.9 7.9 72 71-144 2-74 (75)
30 cd03053 GST_N_Phi GST_N family 99.7 1E-16 2.2E-21 115.2 8.2 73 70-145 2-76 (76)
31 cd03055 GST_N_Omega GST_N fami 99.7 1.6E-16 3.4E-21 118.1 9.2 76 65-143 14-89 (89)
32 cd03047 GST_N_2 GST_N family, 99.7 1.3E-16 2.8E-21 113.9 7.5 71 70-143 1-73 (73)
33 cd03039 GST_N_Sigma_like GST_N 99.7 7.7E-17 1.7E-21 114.7 6.0 72 70-144 1-72 (72)
34 cd03076 GST_N_Pi GST_N family, 99.7 1.3E-16 2.7E-21 114.2 7.0 73 69-145 1-73 (73)
35 cd03057 GST_N_Beta GST_N famil 99.7 2.3E-16 5.1E-21 113.6 8.2 75 70-147 1-77 (77)
36 TIGR02182 GRXB Glutaredoxin, G 99.7 3.5E-16 7.7E-21 134.1 10.3 91 71-168 1-91 (209)
37 cd03080 GST_N_Metaxin_like GST 99.7 3.7E-16 7.9E-21 112.3 8.1 68 69-147 1-75 (75)
38 PF13409 GST_N_2: Glutathione 99.7 1.5E-16 3.2E-21 113.0 5.6 67 77-145 1-70 (70)
39 cd03049 GST_N_3 GST_N family, 99.6 5.1E-16 1.1E-20 110.7 7.8 71 70-143 1-73 (73)
40 cd03046 GST_N_GTT1_like GST_N 99.6 1E-15 2.3E-20 109.7 8.0 74 70-147 1-76 (76)
41 PLN02378 glutathione S-transfe 99.6 1.9E-15 4.1E-20 129.9 10.0 129 75-220 17-145 (213)
42 cd03042 GST_N_Zeta GST_N famil 99.6 1.4E-15 3.1E-20 108.0 7.2 71 70-143 1-73 (73)
43 cd03041 GST_N_2GST_N GST_N fam 99.6 1.8E-15 3.9E-20 109.3 7.3 77 190-266 1-77 (77)
44 cd03038 GST_N_etherase_LigE GS 99.6 1.6E-15 3.4E-20 111.3 6.7 70 76-147 14-84 (84)
45 TIGR00862 O-ClC intracellular 99.6 7.4E-15 1.6E-19 128.0 11.3 71 75-149 16-86 (236)
46 cd03077 GST_N_Alpha GST_N fami 99.6 4.7E-15 1E-19 107.7 7.9 71 70-147 2-77 (79)
47 cd03075 GST_N_Mu GST_N family, 99.6 4.8E-15 1E-19 108.5 7.1 74 71-146 2-82 (82)
48 cd00570 GST_N_family Glutathio 99.6 7.1E-15 1.5E-19 102.2 7.4 71 70-143 1-71 (71)
49 PTZ00057 glutathione s-transfe 99.6 1.6E-14 3.5E-19 123.3 10.6 140 69-220 4-150 (205)
50 PLN02817 glutathione dehydroge 99.6 1.3E-14 2.8E-19 128.8 9.8 85 77-167 72-156 (265)
51 PF02798 GST_N: Glutathione S- 99.5 2.4E-14 5.2E-19 103.2 8.2 71 70-144 3-76 (76)
52 cd03043 GST_N_1 GST_N family, 99.5 1.8E-14 3.9E-19 103.0 6.7 66 75-143 7-73 (73)
53 cd03054 GST_N_Metaxin GST_N fa 99.5 4.1E-14 9E-19 100.6 7.5 64 71-145 2-72 (72)
54 cd03048 GST_N_Ure2p_like GST_N 99.4 4.8E-13 1E-17 97.3 7.8 77 191-268 2-81 (81)
55 TIGR02190 GlrX-dom Glutaredoxi 99.4 1.3E-12 2.8E-17 94.8 9.0 75 65-143 5-79 (79)
56 PF13417 GST_N_3: Glutathione 99.4 1.8E-12 3.9E-17 93.0 7.4 74 193-269 1-74 (75)
57 COG2999 GrxB Glutaredoxin 2 [P 99.4 1E-12 2.2E-17 106.9 5.9 92 70-168 1-92 (215)
58 cd03045 GST_N_Delta_Epsilon GS 99.4 2.4E-12 5.3E-17 91.6 7.0 72 191-264 1-74 (74)
59 cd03052 GST_N_GDAP1 GST_N fami 99.3 2.6E-12 5.7E-17 91.8 7.0 70 192-263 2-73 (73)
60 cd03059 GST_N_SspA GST_N famil 99.3 3.6E-12 7.8E-17 90.4 7.6 72 192-266 2-73 (73)
61 cd03029 GRX_hybridPRX5 Glutare 99.3 9.5E-12 2.1E-16 88.4 8.5 71 69-143 2-72 (72)
62 cd03050 GST_N_Theta GST_N fami 99.3 1.1E-11 2.5E-16 88.8 7.6 73 192-266 2-76 (76)
63 cd03079 GST_N_Metaxin2 GST_N f 99.3 7.7E-12 1.7E-16 89.4 6.3 65 69-145 10-74 (74)
64 PRK09481 sspA stringent starva 99.3 9.8E-12 2.1E-16 106.5 8.0 76 190-268 10-85 (211)
65 cd03058 GST_N_Tau GST_N family 99.3 1.6E-11 3.5E-16 87.6 7.4 73 191-266 1-74 (74)
66 COG0625 Gst Glutathione S-tran 99.3 1.4E-11 3E-16 105.4 8.3 80 192-272 2-83 (211)
67 cd03061 GST_N_CLIC GST_N famil 99.3 2.8E-11 6E-16 90.0 8.7 70 197-269 20-89 (91)
68 PRK10638 glutaredoxin 3; Provi 99.3 3.2E-11 7E-16 88.2 8.7 72 69-143 3-74 (83)
69 cd03057 GST_N_Beta GST_N famil 99.2 3E-11 6.5E-16 86.8 7.5 74 192-267 2-77 (77)
70 cd03047 GST_N_2 GST_N family, 99.2 2.3E-11 4.9E-16 86.6 6.8 70 192-263 2-73 (73)
71 KOG1695 Glutathione S-transfer 99.2 1.3E-10 2.8E-15 98.9 11.7 146 68-220 2-150 (206)
72 cd03056 GST_N_4 GST_N family, 99.2 3.7E-11 8E-16 85.0 6.9 70 192-263 2-73 (73)
73 cd03053 GST_N_Phi GST_N family 99.2 3.9E-11 8.4E-16 85.9 7.0 73 191-265 2-76 (76)
74 PRK15113 glutathione S-transfe 99.2 3.1E-11 6.7E-16 103.6 7.6 77 190-268 5-85 (214)
75 cd03060 GST_N_Omega_like GST_N 99.2 6.2E-11 1.3E-15 83.9 7.2 69 192-262 2-70 (71)
76 cd03051 GST_N_GTT2_like GST_N 99.2 5E-11 1.1E-15 84.4 6.7 71 192-263 2-74 (74)
77 cd03046 GST_N_GTT1_like GST_N 99.2 6.8E-11 1.5E-15 84.5 7.2 73 192-267 2-76 (76)
78 PLN02473 glutathione S-transfe 99.2 5.7E-11 1.2E-15 101.7 7.9 77 190-268 2-80 (214)
79 KOG4420 Uncharacterized conser 99.2 2.5E-11 5.5E-16 104.3 5.3 85 62-149 19-105 (325)
80 cd03076 GST_N_Pi GST_N family, 99.2 3.2E-11 6.9E-16 86.0 5.0 72 191-265 2-73 (73)
81 PF13409 GST_N_2: Glutathione 99.2 9.6E-11 2.1E-15 82.9 7.4 67 198-265 1-70 (70)
82 cd03040 GST_N_mPGES2 GST_N fam 99.2 4.6E-11 9.9E-16 85.8 5.8 74 191-267 2-77 (77)
83 cd03037 GST_N_GRX2 GST_N famil 99.2 8.6E-11 1.9E-15 83.1 6.7 70 192-264 2-71 (71)
84 cd03039 GST_N_Sigma_like GST_N 99.2 3.4E-11 7.5E-16 85.4 4.7 71 192-264 2-72 (72)
85 PRK13972 GSH-dependent disulfi 99.2 7.1E-11 1.5E-15 101.4 7.5 77 191-268 2-85 (215)
86 cd03044 GST_N_EF1Bgamma GST_N 99.2 1.3E-10 2.7E-15 83.3 7.6 72 192-264 2-74 (75)
87 cd03027 GRX_DEP Glutaredoxin ( 99.1 2.2E-10 4.7E-15 81.6 8.3 69 69-140 2-70 (73)
88 cd03055 GST_N_Omega GST_N fami 99.1 1.5E-10 3.2E-15 85.9 7.0 76 186-263 14-89 (89)
89 TIGR02196 GlrX_YruB Glutaredox 99.1 4E-10 8.7E-15 79.2 8.5 71 69-142 1-73 (74)
90 cd02066 GRX_family Glutaredoxi 99.1 5.3E-10 1.1E-14 78.1 8.5 70 69-141 1-70 (72)
91 cd03049 GST_N_3 GST_N family, 99.1 2.5E-10 5.4E-15 81.1 6.9 70 192-263 2-73 (73)
92 PRK10387 glutaredoxin 2; Provi 99.1 2.2E-10 4.8E-15 97.6 7.6 76 191-269 1-76 (210)
93 COG0695 GrxC Glutaredoxin and 99.1 6.3E-10 1.4E-14 80.9 8.7 74 69-144 2-76 (80)
94 cd03042 GST_N_Zeta GST_N famil 99.1 3.8E-10 8.2E-15 79.8 6.9 70 192-263 2-73 (73)
95 cd03080 GST_N_Metaxin_like GST 99.1 3E-10 6.5E-15 81.3 6.3 60 198-267 16-75 (75)
96 PRK11752 putative S-transferas 99.1 3.4E-10 7.3E-15 100.5 7.5 79 189-268 43-131 (264)
97 PF02798 GST_N: Glutathione S- 99.1 4.5E-10 9.8E-15 80.8 6.7 64 200-264 10-76 (76)
98 cd03418 GRX_GRXb_1_3_like Glut 99.1 1E-09 2.2E-14 78.2 8.3 72 69-143 1-73 (75)
99 cd03038 GST_N_etherase_LigE GS 99.1 5E-10 1.1E-14 81.9 6.7 69 197-267 14-84 (84)
100 TIGR02183 GRXA Glutaredoxin, G 99.0 1.5E-09 3.2E-14 80.0 8.9 75 70-147 2-83 (86)
101 PLN02378 glutathione S-transfe 99.0 8E-10 1.7E-14 94.9 8.5 70 196-268 17-86 (213)
102 KOG0867 Glutathione S-transfer 99.0 5.1E-10 1.1E-14 97.2 7.1 76 190-267 2-79 (226)
103 TIGR00862 O-ClC intracellular 99.0 1E-09 2.2E-14 95.8 8.8 70 196-268 16-85 (236)
104 TIGR02182 GRXB Glutaredoxin, G 99.0 9.5E-10 2.1E-14 94.2 8.3 74 192-268 1-74 (209)
105 TIGR02200 GlrX_actino Glutared 99.0 1.8E-09 4E-14 77.0 8.5 73 69-143 1-76 (77)
106 cd03075 GST_N_Mu GST_N family, 99.0 7.3E-10 1.6E-14 80.9 6.3 73 192-266 2-82 (82)
107 PRK11200 grxA glutaredoxin 1; 99.0 2.8E-09 6.1E-14 78.2 9.3 76 69-147 2-84 (85)
108 cd03077 GST_N_Alpha GST_N fami 99.0 1.2E-09 2.5E-14 79.2 6.9 70 192-267 3-77 (79)
109 KOG3029 Glutathione S-transfer 99.0 9.3E-10 2E-14 95.8 7.2 70 69-144 90-159 (370)
110 PLN02395 glutathione S-transfe 99.0 1.4E-09 3E-14 93.1 8.1 75 191-268 3-79 (215)
111 KOG0868 Glutathione S-transfer 99.0 7.3E-10 1.6E-14 90.5 5.9 78 190-269 5-85 (217)
112 PHA03050 glutaredoxin; Provisi 99.0 3.5E-09 7.6E-14 81.4 9.1 73 66-140 11-88 (108)
113 KOG0406 Glutathione S-transfer 99.0 1.9E-09 4E-14 92.8 7.8 77 189-268 8-85 (231)
114 PRK10542 glutathionine S-trans 99.0 1.5E-09 3.2E-14 91.9 7.2 75 192-268 2-79 (201)
115 PLN02907 glutamate-tRNA ligase 99.0 3.1E-09 6.8E-14 105.8 10.4 83 70-168 3-85 (722)
116 PRK10329 glutaredoxin-like pro 99.0 4.7E-09 1E-13 76.5 8.7 71 69-141 2-72 (81)
117 cd02976 NrdH NrdH-redoxin (Nrd 99.0 3.2E-09 6.8E-14 74.5 7.5 63 69-134 1-63 (73)
118 TIGR02181 GRX_bact Glutaredoxi 98.9 4.4E-09 9.5E-14 75.9 7.9 72 70-144 1-72 (79)
119 cd03043 GST_N_1 GST_N family, 98.9 4.4E-09 9.5E-14 75.0 7.6 66 196-263 7-73 (73)
120 cd00570 GST_N_family Glutathio 98.9 3.8E-09 8.2E-14 72.9 6.8 70 192-263 2-71 (71)
121 TIGR02189 GlrX-like_plant Glut 98.9 9.3E-09 2E-13 77.8 9.3 74 66-141 6-81 (99)
122 TIGR01262 maiA maleylacetoacet 98.9 4.6E-09 9.9E-14 89.5 7.8 74 193-268 2-78 (210)
123 cd03419 GRX_GRXh_1_2_like Glut 98.9 1.3E-08 2.7E-13 73.7 8.8 74 69-144 1-76 (82)
124 TIGR00365 monothiol glutaredox 98.9 1.4E-08 3.1E-13 76.5 9.3 74 66-142 10-88 (97)
125 PRK10357 putative glutathione 98.9 4.9E-09 1.1E-13 88.9 7.5 75 192-268 2-76 (202)
126 TIGR02194 GlrX_NrdH Glutaredox 98.9 7.8E-09 1.7E-13 73.4 7.1 54 70-125 1-54 (72)
127 PF00462 Glutaredoxin: Glutare 98.9 5.3E-09 1.1E-13 71.5 5.9 59 70-131 1-59 (60)
128 PLN02817 glutathione dehydroge 98.9 9.9E-09 2.1E-13 91.2 8.6 68 198-268 72-139 (265)
129 cd03028 GRX_PICOT_like Glutare 98.8 3E-08 6.5E-13 73.7 9.3 74 66-142 6-84 (90)
130 cd03054 GST_N_Metaxin GST_N fa 98.8 1.3E-08 2.8E-13 72.1 6.2 59 197-265 14-72 (72)
131 PTZ00057 glutathione s-transfe 98.8 1.6E-08 3.6E-13 86.2 6.8 74 190-268 4-85 (205)
132 TIGR02180 GRX_euk Glutaredoxin 98.7 6.4E-08 1.4E-12 70.1 8.4 73 70-144 1-77 (84)
133 cd03078 GST_N_Metaxin1_like GS 98.7 5.1E-08 1.1E-12 69.6 7.3 58 77-145 15-72 (73)
134 KOG1422 Intracellular Cl- chan 98.7 6.8E-08 1.5E-12 81.1 8.7 83 76-162 19-101 (221)
135 PRK10824 glutaredoxin-4; Provi 98.5 5.6E-07 1.2E-11 69.8 8.9 74 66-142 13-91 (115)
136 cd03079 GST_N_Metaxin2 GST_N f 98.5 4.9E-07 1.1E-11 64.6 6.5 59 198-265 16-74 (74)
137 TIGR02190 GlrX-dom Glutaredoxi 98.4 5.4E-07 1.2E-11 65.1 6.0 74 187-263 6-79 (79)
138 KOG4420 Uncharacterized conser 98.3 2.8E-07 6E-12 79.7 3.2 80 187-268 23-104 (325)
139 PRK10638 glutaredoxin 3; Provi 98.3 1.7E-06 3.7E-11 63.0 5.8 73 190-264 3-75 (83)
140 cd03029 GRX_hybridPRX5 Glutare 98.3 2.9E-06 6.4E-11 59.9 6.2 71 190-263 2-72 (72)
141 KOG4244 Failed axon connection 98.2 4.6E-06 1E-10 72.6 8.2 73 67-150 43-122 (281)
142 COG2999 GrxB Glutaredoxin 2 [P 98.2 1.9E-06 4.2E-11 70.6 4.7 76 191-269 1-76 (215)
143 PTZ00062 glutaredoxin; Provisi 98.2 9.9E-06 2.1E-10 69.1 9.3 74 65-141 110-188 (204)
144 KOG1752 Glutaredoxin and relat 98.2 1.5E-05 3.3E-10 60.6 9.0 75 65-141 11-87 (104)
145 TIGR02196 GlrX_YruB Glutaredox 98.2 3.3E-06 7.1E-11 59.0 4.9 73 191-263 2-74 (74)
146 PRK12759 bifunctional gluaredo 98.1 9.7E-06 2.1E-10 76.4 8.8 70 68-140 2-79 (410)
147 cd03031 GRX_GRX_like Glutaredo 98.1 1.8E-05 3.9E-10 64.1 8.7 70 69-141 1-80 (147)
148 PRK10329 glutaredoxin-like pro 98.0 1.3E-05 2.9E-10 58.2 5.7 76 190-266 2-77 (81)
149 cd02976 NrdH NrdH-redoxin (Nrd 98.0 9.8E-06 2.1E-10 56.4 4.6 71 191-261 2-72 (73)
150 cd03027 GRX_DEP Glutaredoxin ( 98.0 1.5E-05 3.3E-10 56.4 5.5 68 191-260 3-70 (73)
151 cd02066 GRX_family Glutaredoxi 97.9 2.4E-05 5.1E-10 54.1 5.4 69 191-261 2-70 (72)
152 cd03036 ArsC_like Arsenate Red 97.9 1.2E-05 2.6E-10 62.1 4.1 35 70-104 1-35 (111)
153 PRK11200 grxA glutaredoxin 1; 97.9 4.8E-05 1E-09 55.5 6.5 75 191-267 3-84 (85)
154 KOG1695 Glutathione S-transfer 97.8 3.2E-05 6.9E-10 66.0 5.8 75 191-268 4-78 (206)
155 cd03078 GST_N_Metaxin1_like GS 97.8 6E-05 1.3E-09 53.7 6.3 59 197-265 14-72 (73)
156 TIGR02200 GlrX_actino Glutared 97.8 4.3E-05 9.3E-10 54.0 5.4 72 191-263 2-76 (77)
157 cd02973 TRX_GRX_like Thioredox 97.8 7.4E-05 1.6E-09 51.7 6.1 58 69-133 2-64 (67)
158 TIGR02183 GRXA Glutaredoxin, G 97.8 7.7E-05 1.7E-09 54.7 6.4 76 191-268 2-84 (86)
159 PRK01655 spxA transcriptional 97.8 4.8E-05 1E-09 60.5 5.5 36 69-104 1-36 (131)
160 cd03418 GRX_GRXb_1_3_like Glut 97.8 6.2E-05 1.4E-09 53.2 5.6 71 191-263 2-73 (75)
161 TIGR02194 GlrX_NrdH Glutaredox 97.8 5.9E-05 1.3E-09 53.3 5.3 68 192-260 2-70 (72)
162 TIGR02181 GRX_bact Glutaredoxi 97.7 7.4E-05 1.6E-09 53.5 5.6 71 192-264 2-72 (79)
163 cd03032 ArsC_Spx Arsenate Redu 97.7 7.1E-05 1.5E-09 58.0 5.7 36 69-104 1-36 (115)
164 cd02977 ArsC_family Arsenate R 97.7 8.7E-05 1.9E-09 56.5 5.5 45 70-115 1-45 (105)
165 PTZ00062 glutaredoxin; Provisi 97.6 0.0019 4.1E-08 55.2 13.6 155 70-261 21-188 (204)
166 PRK12559 transcriptional regul 97.5 0.00018 3.8E-09 57.2 5.5 36 69-104 1-36 (131)
167 COG0695 GrxC Glutaredoxin and 97.5 0.00024 5.3E-09 51.4 5.4 69 191-261 3-73 (80)
168 COG4545 Glutaredoxin-related p 97.5 0.00038 8.3E-09 49.0 6.0 62 71-133 5-77 (85)
169 PRK13344 spxA transcriptional 97.5 0.00025 5.3E-09 56.5 5.7 36 69-104 1-36 (132)
170 TIGR01617 arsC_related transcr 97.5 0.00023 5E-09 55.3 5.4 35 70-104 1-35 (117)
171 KOG3029 Glutathione S-transfer 97.4 0.00028 6.1E-09 62.0 6.0 70 189-263 89-158 (370)
172 PHA03050 glutaredoxin; Provisi 97.4 0.00035 7.6E-09 53.6 5.3 70 189-260 13-88 (108)
173 KOG1422 Intracellular Cl- chan 97.3 0.0012 2.5E-08 55.9 8.1 72 198-272 20-91 (221)
174 cd03035 ArsC_Yffb Arsenate Red 97.2 0.00064 1.4E-08 51.9 5.1 35 70-104 1-35 (105)
175 TIGR00365 monothiol glutaredox 97.2 0.00089 1.9E-08 50.3 5.7 64 197-262 25-88 (97)
176 cd03419 GRX_GRXh_1_2_like Glut 97.2 0.0014 3E-08 46.9 6.5 72 191-264 2-76 (82)
177 PF00462 Glutaredoxin: Glutare 97.2 0.00028 6E-09 47.8 2.3 55 192-246 2-56 (60)
178 cd03028 GRX_PICOT_like Glutare 97.2 0.0016 3.4E-08 48.1 6.6 65 197-263 21-85 (90)
179 cd03033 ArsC_15kD Arsenate Red 97.1 0.00093 2E-08 51.7 5.3 36 69-104 1-36 (113)
180 TIGR02189 GlrX-like_plant Glut 97.1 0.0019 4.1E-08 48.7 6.6 72 188-261 7-81 (99)
181 PF10568 Tom37: Outer mitochon 97.0 0.003 6.6E-08 44.8 6.3 56 77-142 13-71 (72)
182 COG1393 ArsC Arsenate reductas 97.0 0.002 4.3E-08 50.2 5.8 37 68-104 1-37 (117)
183 PRK10853 putative reductase; P 96.9 0.0017 3.6E-08 50.7 5.1 36 69-104 1-36 (118)
184 TIGR00412 redox_disulf_2 small 96.9 0.0043 9.2E-08 44.3 6.6 55 70-133 3-61 (76)
185 cd03030 GRX_SH3BGR Glutaredoxi 96.8 0.0098 2.1E-07 44.3 8.2 68 70-140 2-79 (92)
186 TIGR01616 nitro_assoc nitrogen 96.8 0.0029 6.2E-08 49.9 5.5 36 69-104 2-37 (126)
187 TIGR02180 GRX_euk Glutaredoxin 96.8 0.0062 1.4E-07 43.5 6.9 71 192-264 2-77 (84)
188 PRK10026 arsenate reductase; P 96.8 0.0028 6E-08 51.0 5.4 37 68-104 2-38 (141)
189 PLN02907 glutamate-tRNA ligase 96.7 0.0028 6.1E-08 63.8 6.1 63 191-268 3-65 (722)
190 TIGR00411 redox_disulf_1 small 96.5 0.027 5.9E-07 39.9 8.4 57 69-130 2-62 (82)
191 cd03034 ArsC_ArsC Arsenate Red 96.4 0.0069 1.5E-07 46.7 5.2 35 70-104 1-35 (112)
192 TIGR00014 arsC arsenate reduct 96.3 0.0076 1.6E-07 46.6 5.1 35 70-104 1-35 (114)
193 cd01659 TRX_superfamily Thiore 96.3 0.015 3.2E-07 37.6 6.0 55 70-126 1-60 (69)
194 COG0278 Glutaredoxin-related p 96.1 0.031 6.8E-07 41.8 7.2 73 65-140 12-90 (105)
195 PF05768 DUF836: Glutaredoxin- 96.0 0.043 9.4E-07 39.5 7.5 51 69-125 1-55 (81)
196 PHA02125 thioredoxin-like prot 95.9 0.035 7.5E-07 39.3 6.4 52 69-125 1-52 (75)
197 PRK10824 glutaredoxin-4; Provi 95.9 0.029 6.4E-07 43.5 6.3 64 197-262 28-91 (115)
198 cd03026 AhpF_NTD_C TRX-GRX-lik 95.8 0.029 6.3E-07 41.3 5.9 58 69-133 15-77 (89)
199 KOG2903 Predicted glutathione 95.6 0.13 2.7E-06 45.3 9.8 193 68-267 36-277 (319)
200 PF11287 DUF3088: Protein of u 95.5 0.074 1.6E-06 40.7 7.1 67 78-148 24-109 (112)
201 KOG4244 Failed axon connection 95.5 0.036 7.8E-07 48.7 5.9 63 197-269 59-121 (281)
202 TIGR02187 GlrX_arch Glutaredox 95.3 0.7 1.5E-05 39.5 13.5 171 68-264 21-214 (215)
203 cd03031 GRX_GRX_like Glutaredo 95.2 0.052 1.1E-06 44.0 5.7 61 198-260 15-79 (147)
204 PF10568 Tom37: Outer mitochon 95.0 0.098 2.1E-06 37.0 6.1 57 198-263 13-72 (72)
205 PF13192 Thioredoxin_3: Thiore 94.8 0.21 4.6E-06 35.3 7.6 58 69-135 2-63 (76)
206 PF03960 ArsC: ArsC family; I 94.4 0.089 1.9E-06 40.2 5.1 31 73-103 1-31 (110)
207 cd03036 ArsC_like Arsenate Red 94.3 0.039 8.5E-07 42.3 2.9 51 191-241 1-51 (111)
208 PRK12759 bifunctional gluaredo 93.7 0.14 2.9E-06 48.5 5.8 68 190-260 3-79 (410)
209 KOG1752 Glutaredoxin and relat 93.5 0.36 7.8E-06 36.7 6.8 73 189-263 14-89 (104)
210 KOG0911 Glutaredoxin-related p 92.8 0.53 1.1E-05 40.5 7.4 72 66-140 137-213 (227)
211 TIGR01295 PedC_BrcD bacterioci 92.7 0.66 1.4E-05 36.1 7.5 63 69-131 26-102 (122)
212 cd02975 PfPDO_like_N Pyrococcu 92.7 0.34 7.4E-06 37.1 5.7 52 69-125 24-81 (113)
213 KOG3027 Mitochondrial outer me 92.6 0.73 1.6E-05 39.2 7.9 58 79-146 35-92 (257)
214 COG0435 ECM4 Predicted glutath 92.2 0.53 1.1E-05 41.8 6.8 189 67-267 49-276 (324)
215 cd02977 ArsC_family Arsenate R 92.1 0.2 4.4E-06 37.7 3.7 45 192-236 2-46 (105)
216 cd03032 ArsC_Spx Arsenate Redu 92.0 0.18 4E-06 38.8 3.5 35 191-225 2-36 (115)
217 PF04908 SH3BGR: SH3-binding, 92.0 0.85 1.8E-05 34.3 6.9 63 69-134 2-79 (99)
218 PRK01655 spxA transcriptional 91.9 0.17 3.7E-06 40.1 3.2 34 191-224 2-35 (131)
219 cd03030 GRX_SH3BGR Glutaredoxi 90.9 0.84 1.8E-05 33.8 5.9 58 201-260 18-79 (92)
220 cd02947 TRX_family TRX family; 90.9 0.89 1.9E-05 31.8 6.0 57 69-130 13-74 (93)
221 PF09635 MetRS-N: MetRS-N bind 90.9 0.12 2.7E-06 40.1 1.4 36 113-148 29-64 (122)
222 TIGR02187 GlrX_arch Glutaredox 90.7 1.6 3.5E-05 37.2 8.4 56 69-129 136-196 (215)
223 cd02949 TRX_NTR TRX domain, no 90.5 1.3 2.8E-05 32.5 6.7 60 67-131 14-79 (97)
224 TIGR01617 arsC_related transcr 89.8 0.37 8E-06 37.2 3.3 40 192-231 2-41 (117)
225 cd02953 DsbDgamma DsbD gamma f 89.7 1.6 3.5E-05 32.3 6.7 56 69-125 14-78 (104)
226 PRK13344 spxA transcriptional 89.6 0.47 1E-05 37.6 3.8 33 191-223 2-34 (132)
227 PF09635 MetRS-N: MetRS-N bind 89.3 0.26 5.6E-06 38.3 2.0 34 235-268 31-64 (122)
228 PF00085 Thioredoxin: Thioredo 89.1 4.2 9.2E-05 29.4 8.6 73 69-144 20-102 (103)
229 PF13098 Thioredoxin_2: Thiore 88.8 0.91 2E-05 34.0 4.8 24 67-90 6-29 (112)
230 PRK12559 transcriptional regul 88.6 0.56 1.2E-05 37.1 3.6 33 191-223 2-34 (131)
231 COG4545 Glutaredoxin-related p 87.6 1.4 3.1E-05 31.3 4.6 62 192-253 5-78 (85)
232 cd03035 ArsC_Yffb Arsenate Red 87.2 0.88 1.9E-05 34.5 3.8 39 192-230 2-40 (105)
233 cd02959 ERp19 Endoplasmic reti 87.1 2.7 5.9E-05 32.3 6.6 60 69-131 22-89 (117)
234 PF11287 DUF3088: Protein of u 86.8 2.6 5.5E-05 32.4 6.0 71 198-269 23-110 (112)
235 cd02955 SSP411 TRX domain, SSP 86.5 2.8 6.1E-05 32.8 6.4 66 70-135 19-97 (124)
236 COG1393 ArsC Arsenate reductas 86.3 0.92 2E-05 35.2 3.5 36 190-225 2-37 (117)
237 PRK15317 alkyl hydroperoxide r 86.2 2 4.3E-05 41.8 6.6 73 67-146 117-198 (517)
238 TIGR03143 AhpF_homolog putativ 85.8 1.9 4.1E-05 42.4 6.3 57 69-132 479-540 (555)
239 cd03033 ArsC_15kD Arsenate Red 85.1 1.1 2.4E-05 34.5 3.4 35 191-225 2-36 (113)
240 COG3011 Predicted thiol-disulf 84.5 5.9 0.00013 31.6 7.3 78 66-146 7-87 (137)
241 PF05768 DUF836: Glutaredoxin- 84.2 6.2 0.00014 28.1 6.9 68 191-263 2-81 (81)
242 cd02973 TRX_GRX_like Thioredox 84.1 2.3 4.9E-05 28.7 4.4 52 191-246 3-59 (67)
243 TIGR03140 AhpF alkyl hydropero 83.7 0.78 1.7E-05 44.6 2.5 72 67-145 118-198 (515)
244 PRK10877 protein disulfide iso 82.8 3 6.5E-05 36.2 5.6 27 65-91 106-132 (232)
245 cd02993 PDI_a_APS_reductase PD 82.8 5.7 0.00012 29.8 6.5 54 68-124 23-83 (109)
246 PTZ00051 thioredoxin; Provisio 82.6 6.4 0.00014 28.4 6.6 57 69-130 21-82 (98)
247 PHA02278 thioredoxin-like prot 82.4 6.2 0.00014 29.7 6.5 62 70-132 18-85 (103)
248 PRK10853 putative reductase; P 82.2 1.7 3.7E-05 33.7 3.5 34 191-224 2-35 (118)
249 TIGR01068 thioredoxin thioredo 81.8 9.1 0.0002 27.4 7.2 56 70-130 18-79 (101)
250 KOG3028 Translocase of outer m 81.8 17 0.00036 33.0 9.9 59 77-145 16-74 (313)
251 cd02951 SoxW SoxW family; SoxW 81.4 5.2 0.00011 30.6 6.0 20 67-86 15-34 (125)
252 PRK11657 dsbG disulfide isomer 81.2 4.3 9.3E-05 35.7 6.0 25 66-90 117-141 (251)
253 cd02984 TRX_PICOT TRX domain, 80.7 4.3 9.3E-05 29.3 5.0 60 69-131 17-80 (97)
254 cd03020 DsbA_DsbC_DsbG DsbA fa 80.6 4.5 9.7E-05 33.9 5.7 25 66-90 77-101 (197)
255 cd02996 PDI_a_ERp44 PDIa famil 80.3 9.9 0.00021 28.2 7.1 57 69-130 21-89 (108)
256 cd02989 Phd_like_TxnDC9 Phosdu 79.6 8.4 0.00018 29.3 6.5 60 69-133 25-89 (113)
257 PRK10026 arsenate reductase; P 79.5 2.2 4.9E-05 34.2 3.3 74 190-263 3-117 (141)
258 PHA03075 glutaredoxin-like pro 79.5 2.5 5.5E-05 32.6 3.4 51 67-125 2-52 (123)
259 PRK09381 trxA thioredoxin; Pro 79.3 18 0.00039 26.7 8.3 58 69-131 24-87 (109)
260 cd02950 TxlA TRX-like protein 79.3 22 0.00047 28.2 9.1 60 70-132 24-90 (142)
261 cd02997 PDI_a_PDIR PDIa family 78.8 8.9 0.00019 27.8 6.3 60 68-130 19-86 (104)
262 TIGR01616 nitro_assoc nitrogen 78.7 2.6 5.6E-05 33.1 3.4 33 191-223 3-35 (126)
263 cd02985 TRX_CDSP32 TRX family, 77.6 11 0.00023 28.0 6.5 60 70-131 19-83 (103)
264 cd03034 ArsC_ArsC Arsenate Red 77.3 3.5 7.5E-05 31.5 3.7 32 192-223 2-33 (112)
265 TIGR00014 arsC arsenate reduct 74.6 4.5 9.6E-05 31.0 3.7 40 192-231 2-41 (114)
266 PRK10996 thioredoxin 2; Provis 73.3 28 0.00062 27.4 8.2 59 69-130 55-117 (139)
267 cd02972 DsbA_family DsbA famil 72.6 5 0.00011 28.3 3.4 32 70-101 1-38 (98)
268 cd02952 TRP14_like Human TRX-r 72.3 14 0.00031 28.6 6.1 59 76-135 38-106 (119)
269 cd02954 DIM1 Dim1 family; Dim1 71.8 14 0.00031 28.4 5.9 56 70-130 18-79 (114)
270 cd03002 PDI_a_MPD1_like PDI fa 71.4 17 0.00037 26.7 6.2 54 69-125 21-80 (109)
271 KOG2501 Thioredoxin, nucleored 71.1 12 0.00026 30.6 5.5 35 69-103 35-77 (157)
272 cd03023 DsbA_Com1_like DsbA fa 69.3 6.8 0.00015 30.5 3.8 24 67-90 6-29 (154)
273 PF04134 DUF393: Protein of un 69.1 19 0.00041 27.1 6.1 67 75-145 4-77 (114)
274 cd02948 TRX_NDPK TRX domain, T 69.1 24 0.00053 25.9 6.6 58 69-130 20-82 (102)
275 TIGR01126 pdi_dom protein disu 68.7 6.8 0.00015 28.2 3.5 52 68-124 15-74 (102)
276 cd03004 PDI_a_ERdj5_C PDIa fam 68.2 24 0.00051 25.8 6.4 52 69-125 22-79 (104)
277 cd03006 PDI_a_EFP1_N PDIa fami 67.6 19 0.00041 27.5 5.8 53 69-125 32-90 (113)
278 cd02963 TRX_DnaJ TRX domain, D 67.3 17 0.00037 27.3 5.5 57 69-130 27-90 (111)
279 COG0278 Glutaredoxin-related p 66.1 20 0.00044 27.0 5.4 50 196-245 27-77 (105)
280 cd02956 ybbN ybbN protein fami 65.1 11 0.00025 27.0 4.0 59 69-130 15-77 (96)
281 TIGR00411 redox_disulf_1 small 64.9 31 0.00068 23.7 6.2 71 191-264 3-80 (82)
282 cd02994 PDI_a_TMX PDIa family, 64.8 32 0.00069 24.9 6.5 56 69-129 19-81 (101)
283 cd02961 PDI_a_family Protein D 64.7 7.8 0.00017 27.4 3.0 54 68-124 17-76 (101)
284 PF08534 Redoxin: Redoxin; In 64.3 27 0.00058 27.2 6.4 47 77-126 40-93 (146)
285 PF03960 ArsC: ArsC family; I 64.3 10 0.00022 28.6 3.7 38 194-231 1-38 (110)
286 PF06110 DUF953: Eukaryotic pr 64.1 9.2 0.0002 29.7 3.4 59 76-135 36-105 (119)
287 TIGR02661 MauD methylamine deh 63.9 32 0.0007 28.6 7.0 30 70-99 78-111 (189)
288 PRK03147 thiol-disulfide oxido 63.8 49 0.0011 26.4 8.0 54 70-125 65-125 (173)
289 cd03003 PDI_a_ERdj5_N PDIa fam 63.5 34 0.00073 24.8 6.4 57 69-130 21-83 (101)
290 PHA02125 thioredoxin-like prot 62.1 13 0.00029 25.7 3.8 52 191-246 2-53 (75)
291 PTZ00443 Thioredoxin domain-co 61.7 28 0.0006 30.2 6.3 77 69-148 55-141 (224)
292 cd03005 PDI_a_ERp46 PDIa famil 61.6 25 0.00053 25.3 5.3 53 69-124 19-78 (102)
293 TIGR00385 dsbE periplasmic pro 61.4 42 0.0009 27.3 7.2 54 71-126 68-125 (173)
294 cd03189 GST_C_GTT1_like GST_C 60.8 6.4 0.00014 29.5 2.1 65 153-220 2-79 (119)
295 KOG3425 Uncharacterized conser 60.8 17 0.00036 28.4 4.2 70 75-144 42-121 (128)
296 PRK15412 thiol:disulfide inter 60.3 39 0.00086 27.9 6.9 51 73-125 75-129 (185)
297 cd03019 DsbA_DsbA DsbA family, 59.7 17 0.00037 29.2 4.6 26 66-91 15-40 (178)
298 cd02998 PDI_a_ERp38 PDIa famil 59.6 9.6 0.00021 27.6 2.8 54 69-124 21-80 (105)
299 cd02957 Phd_like Phosducin (Ph 59.4 8.3 0.00018 29.1 2.4 58 70-133 28-90 (113)
300 cd03000 PDI_a_TMX3 PDIa family 58.6 5.6 0.00012 29.4 1.4 52 69-125 18-78 (104)
301 PF04908 SH3BGR: SH3-binding, 58.1 26 0.00057 26.3 4.9 59 201-261 19-86 (99)
302 TIGR00412 redox_disulf_2 small 57.3 52 0.0011 22.8 6.2 48 192-245 4-55 (76)
303 PF13462 Thioredoxin_4: Thiore 57.2 12 0.00025 29.7 3.1 24 66-89 12-35 (162)
304 cd02999 PDI_a_ERp44_like PDIa 56.9 7.9 0.00017 28.7 1.9 52 69-124 21-77 (100)
305 PF14595 Thioredoxin_9: Thiore 56.9 3.9 8.5E-05 32.2 0.2 57 68-126 43-104 (129)
306 cd02967 mauD Methylamine utili 56.7 27 0.00058 25.8 4.9 53 71-124 26-83 (114)
307 PF01323 DSBA: DSBA-like thior 56.7 18 0.0004 29.5 4.3 36 69-104 1-41 (193)
308 KOG2824 Glutaredoxin-related p 55.8 33 0.00071 30.6 5.8 74 65-141 128-211 (281)
309 cd02970 PRX_like2 Peroxiredoxi 55.5 47 0.001 25.6 6.4 56 68-126 24-88 (149)
310 PRK00293 dipZ thiol:disulfide 55.4 87 0.0019 31.0 9.4 55 70-125 478-540 (571)
311 cd02966 TlpA_like_family TlpA- 55.3 43 0.00093 23.9 5.8 55 69-125 22-84 (116)
312 cd03001 PDI_a_P5 PDIa family, 54.3 59 0.0013 23.3 6.4 52 69-125 21-78 (103)
313 cd03008 TryX_like_RdCVF Trypar 54.1 76 0.0016 25.5 7.3 22 69-90 27-49 (146)
314 PF00578 AhpC-TSA: AhpC/TSA fa 53.8 53 0.0012 24.4 6.2 51 73-126 33-90 (124)
315 cd02987 Phd_like_Phd Phosducin 52.6 44 0.00095 27.6 5.9 58 71-132 88-148 (175)
316 KOG3027 Mitochondrial outer me 52.6 39 0.00084 29.1 5.4 57 200-265 35-91 (257)
317 cd02995 PDI_a_PDI_a'_C PDIa fa 51.5 13 0.00028 26.8 2.3 23 69-91 21-43 (104)
318 cd02992 PDI_a_QSOX PDIa family 51.5 42 0.00092 25.3 5.3 54 69-125 22-84 (114)
319 PLN02309 5'-adenylylsulfate re 50.8 91 0.002 30.1 8.4 54 69-125 368-428 (457)
320 cd02958 UAS UAS family; UAS is 50.0 77 0.0017 23.6 6.5 56 68-124 18-81 (114)
321 COG3019 Predicted metal-bindin 48.8 35 0.00076 27.4 4.4 70 67-146 25-104 (149)
322 cd03010 TlpA_like_DsbE TlpA-li 48.6 88 0.0019 23.5 6.8 22 70-91 29-50 (127)
323 TIGR01130 ER_PDI_fam protein d 48.5 1.1E+02 0.0024 28.6 8.7 75 69-148 21-111 (462)
324 cd03009 TryX_like_TryX_NRX Try 48.1 41 0.0009 25.6 4.8 18 72-89 24-41 (131)
325 PRK13728 conjugal transfer pro 47.5 38 0.00082 28.4 4.7 32 70-101 73-108 (181)
326 TIGR01626 ytfJ_HI0045 conserve 47.3 63 0.0014 27.1 6.0 60 68-129 59-135 (184)
327 cd02962 TMX2 TMX2 family; comp 46.5 26 0.00055 28.4 3.5 60 70-133 51-122 (152)
328 TIGR00424 APS_reduc 5'-adenyly 45.5 1.1E+02 0.0023 29.7 8.0 53 69-124 374-433 (463)
329 COG1225 Bcp Peroxiredoxin [Pos 45.4 1.1E+02 0.0023 25.1 6.9 69 67-148 30-105 (157)
330 TIGR02740 TraF-like TraF-like 45.3 73 0.0016 28.3 6.5 55 69-124 169-234 (271)
331 cd03024 DsbA_FrnE DsbA family, 44.5 29 0.00063 28.6 3.7 32 70-101 1-40 (201)
332 cd03011 TlpA_like_ScsD_MtbDsbE 43.2 1.1E+02 0.0024 22.7 6.5 56 69-126 23-81 (123)
333 cd03188 GST_C_Beta GST_C famil 43.0 23 0.00049 26.0 2.5 60 158-220 2-68 (114)
334 PRK09437 bcp thioredoxin-depen 42.6 1.1E+02 0.0023 24.0 6.6 56 68-126 31-95 (154)
335 PF13728 TraF: F plasmid trans 42.5 84 0.0018 26.9 6.3 60 68-128 122-194 (215)
336 cd02964 TryX_like_family Trypa 42.4 62 0.0013 24.8 5.0 18 72-89 23-40 (132)
337 cd03021 DsbA_GSTK DsbA family, 42.0 38 0.00082 28.5 4.0 35 69-103 2-40 (209)
338 cd03196 GST_C_5 GST_C family, 41.7 14 0.0003 28.0 1.1 103 155-267 3-107 (115)
339 cd02971 PRX_family Peroxiredox 41.5 85 0.0018 23.9 5.7 58 67-126 22-88 (140)
340 cd03178 GST_C_Ure2p_like GST_C 41.5 20 0.00044 26.4 2.0 59 158-219 1-64 (113)
341 PTZ00102 disulphide isomerase; 41.5 1.4E+02 0.0031 28.2 8.3 76 68-148 51-140 (477)
342 cd03017 PRX_BCP Peroxiredoxin 41.3 1E+02 0.0023 23.4 6.2 56 68-126 24-88 (140)
343 cd02982 PDI_b'_family Protein 40.1 53 0.0011 23.6 4.1 54 69-125 15-74 (103)
344 KOG0190 Protein disulfide isom 39.7 1.5E+02 0.0032 28.9 7.9 78 70-150 46-136 (493)
345 cd03065 PDI_b_Calsequestrin_N 39.1 1.8E+02 0.0039 22.4 7.4 36 90-130 63-98 (120)
346 cd03022 DsbA_HCCA_Iso DsbA fam 38.7 43 0.00092 27.3 3.8 33 70-102 1-37 (192)
347 KOG0907 Thioredoxin [Posttrans 38.0 87 0.0019 23.6 5.0 60 67-131 21-86 (106)
348 cd02965 HyaE HyaE family; HyaE 37.8 41 0.0009 25.8 3.2 64 67-133 28-97 (111)
349 cd03018 PRX_AhpE_like Peroxire 36.9 1.2E+02 0.0025 23.5 6.0 55 68-125 29-92 (149)
350 COG5515 Uncharacterized conser 36.8 26 0.00055 23.9 1.7 22 69-90 2-27 (70)
351 TIGR02739 TraF type-F conjugat 36.6 1.5E+02 0.0033 26.2 7.0 61 68-129 152-225 (256)
352 cd04911 ACT_AKiii-YclM-BS_1 AC 35.9 41 0.00089 23.9 2.7 23 78-100 15-37 (76)
353 PF09413 DUF2007: Domain of un 34.7 40 0.00087 22.7 2.5 33 70-102 1-33 (67)
354 PTZ00056 glutathione peroxidas 33.8 1.9E+02 0.004 24.3 7.0 71 73-147 46-130 (199)
355 smart00594 UAS UAS domain. 33.8 2.1E+02 0.0046 21.7 7.0 61 68-129 29-98 (122)
356 COG0320 LipA Lipoate synthase 33.7 84 0.0018 28.3 4.8 44 82-125 103-156 (306)
357 PF00731 AIRC: AIR carboxylase 33.4 76 0.0016 25.7 4.2 24 78-101 13-36 (150)
358 PF13905 Thioredoxin_8: Thiore 32.9 83 0.0018 22.2 4.2 40 72-111 7-54 (95)
359 cd03182 GST_C_GTT2_like GST_C 32.8 33 0.00071 25.4 2.0 63 155-219 1-73 (117)
360 PRK13599 putative peroxiredoxi 32.5 1.4E+02 0.003 25.5 6.0 58 69-126 30-99 (215)
361 PF11823 DUF3343: Protein of u 30.9 81 0.0018 21.8 3.6 31 72-102 5-35 (73)
362 cd05564 PTS_IIB_chitobiose_lic 30.8 1.6E+02 0.0035 21.5 5.4 24 78-101 13-36 (96)
363 cd03186 GST_C_SspA GST_N famil 30.8 27 0.00059 25.5 1.2 59 157-220 2-60 (107)
364 cd03013 PRX5_like Peroxiredoxi 30.6 1.5E+02 0.0032 23.7 5.6 57 68-126 30-98 (155)
365 cd02960 AGR Anterior Gradient 30.4 42 0.00092 26.5 2.3 19 69-87 26-44 (130)
366 COG5494 Predicted thioredoxin/ 30.4 93 0.002 26.9 4.4 74 67-145 10-87 (265)
367 cd03025 DsbA_FrnE_like DsbA fa 30.4 89 0.0019 25.4 4.4 31 69-99 2-38 (193)
368 PF00282 Pyridoxal_deC: Pyrido 29.7 83 0.0018 29.3 4.5 111 9-131 82-205 (373)
369 TIGR01162 purE phosphoribosyla 29.6 94 0.002 25.4 4.2 23 79-101 12-34 (156)
370 PRK09266 hypothetical protein; 29.0 1.3E+02 0.0028 26.3 5.5 64 83-148 196-260 (266)
371 PRK13190 putative peroxiredoxi 28.9 1.3E+02 0.0028 25.3 5.2 58 68-126 28-98 (202)
372 cd03012 TlpA_like_DipZ_like Tl 28.7 2.5E+02 0.0055 21.0 6.6 51 74-126 31-93 (126)
373 PF06764 DUF1223: Protein of u 28.5 53 0.0012 28.0 2.7 23 70-92 2-24 (202)
374 KOG0911 Glutaredoxin-related p 28.2 1.3E+02 0.0028 26.1 5.0 50 196-245 151-200 (227)
375 cd03180 GST_C_2 GST_C family, 27.7 45 0.00098 24.1 2.0 59 158-219 2-67 (110)
376 COG0041 PurE Phosphoribosylcar 27.1 1.1E+02 0.0023 25.1 4.0 31 79-111 16-46 (162)
377 cd03016 PRX_1cys Peroxiredoxin 27.0 1.2E+02 0.0025 25.5 4.6 58 68-126 26-96 (203)
378 cd03179 GST_C_1 GST_C family, 26.9 52 0.0011 23.6 2.2 59 158-219 2-67 (105)
379 cd03190 GST_C_ECM4_like GST_C 26.4 47 0.001 26.1 2.0 59 158-220 4-62 (142)
380 cd03015 PRX_Typ2cys Peroxiredo 26.2 1.8E+02 0.0038 23.5 5.4 57 68-126 30-101 (173)
381 PRK00522 tpx lipid hydroperoxi 26.1 2.3E+02 0.0049 22.8 6.1 57 69-126 46-108 (167)
382 PF13899 Thioredoxin_7: Thiore 26.1 62 0.0013 22.6 2.4 20 69-88 20-39 (82)
383 PF06053 DUF929: Domain of unk 26.0 55 0.0012 28.9 2.4 22 69-90 61-82 (249)
384 PTZ00256 glutathione peroxidas 25.6 3.5E+02 0.0076 22.1 7.2 71 72-147 47-133 (183)
385 PRK13703 conjugal pilus assemb 25.4 2.9E+02 0.0062 24.3 6.8 35 68-102 145-183 (248)
386 TIGR03137 AhpC peroxiredoxin. 25.2 1.9E+02 0.0041 23.9 5.5 58 68-126 32-100 (187)
387 COG0526 TrxA Thiol-disulfide i 25.2 59 0.0013 22.7 2.2 18 75-92 41-58 (127)
388 cd03187 GST_C_Phi GST_C family 24.6 52 0.0011 24.2 1.8 60 158-220 2-70 (118)
389 PF09868 DUF2095: Uncharacteri 24.5 25 0.00054 27.2 -0.0 65 80-145 24-90 (128)
390 PLN02399 phospholipid hydroper 24.3 3.9E+02 0.0084 23.3 7.4 29 72-100 105-140 (236)
391 PRK10382 alkyl hydroperoxide r 24.2 2E+02 0.0043 24.0 5.4 57 68-126 32-100 (187)
392 TIGR03865 PQQ_CXXCW PQQ-depend 24.2 1.2E+02 0.0026 24.6 4.0 30 65-94 114-143 (162)
393 cd02969 PRX_like1 Peroxiredoxi 23.8 3.8E+02 0.0082 21.3 7.1 22 70-91 29-50 (171)
394 COG0435 ECM4 Predicted glutath 23.6 83 0.0018 28.3 3.0 32 235-266 125-157 (324)
395 cd03014 PRX_Atyp2cys Peroxired 23.5 2.4E+02 0.0051 21.6 5.5 57 68-126 27-90 (143)
396 cd01520 RHOD_YbbB Member of th 23.1 1.6E+02 0.0035 22.5 4.4 37 65-103 84-120 (128)
397 cd03191 GST_C_Zeta GST_C famil 23.0 66 0.0014 24.0 2.1 63 157-220 2-71 (121)
398 KOG0910 Thioredoxin-like prote 22.6 1.8E+02 0.0039 23.6 4.6 61 69-132 64-128 (150)
399 PRK15000 peroxidase; Provision 22.1 2.8E+02 0.0061 23.2 6.0 59 67-126 34-106 (200)
400 cd03185 GST_C_Tau GST_C family 21.8 38 0.00082 25.4 0.6 58 157-219 2-59 (126)
401 cd02986 DLP Dim1 family, Dim1- 21.5 68 0.0015 24.7 1.9 50 72-124 20-73 (114)
402 cd02988 Phd_like_VIAF Phosduci 21.3 76 0.0016 26.6 2.3 55 71-131 107-164 (192)
403 TIGR02738 TrbB type-F conjugat 21.3 1.1E+02 0.0025 24.6 3.3 32 70-101 54-89 (153)
404 PRK13191 putative peroxiredoxi 21.3 2.7E+02 0.0059 23.7 5.8 59 68-126 34-104 (215)
405 cd05565 PTS_IIB_lactose PTS_II 20.8 2.2E+02 0.0048 21.2 4.5 22 80-101 16-37 (99)
406 cd00340 GSH_Peroxidase Glutath 20.5 2.8E+02 0.006 21.7 5.4 52 72-125 28-93 (152)
407 KOG3028 Translocase of outer m 20.3 1.1E+02 0.0025 27.7 3.3 29 235-264 45-73 (313)
408 PF09633 DUF2023: Protein of u 20.3 2.3E+02 0.005 21.3 4.4 34 68-102 15-48 (101)
No 1
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.86 E-value=2e-21 Score=140.58 Aligned_cols=77 Identities=58% Similarity=1.113 Sum_probs=68.4
Q ss_pred ceEEEecCCCchHHHHHHHHHHcCCceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCccccChHHHHHHHHHHh
Q 024026 69 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQY 146 (273)
Q Consensus 69 ~l~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~~l~ES~aI~~YL~~~~ 146 (273)
|++||+++.||||+||+++|+++||+|+.+++..++...+++ .++||.++||+|+|.++|..|+||.+|++||+++|
T Consensus 1 ~~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~~~~~-~~~~p~~~vP~l~~~~~~~~l~es~~I~~yL~~~~ 77 (77)
T cd03041 1 PLELYEFEGSPFCRLVREVLTELELDVILYPCPKGSPKRDKF-LEKGGKVQVPYLVDPNTGVQMFESADIVKYLFKTY 77 (77)
T ss_pred CceEecCCCCchHHHHHHHHHHcCCcEEEEECCCChHHHHHH-HHhCCCCcccEEEeCCCCeEEEcHHHHHHHHHHhC
Confidence 589999999999999999999999999999997665445565 48999999999998546789999999999999986
No 2
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=99.85 E-value=4.9e-21 Score=164.29 Aligned_cols=144 Identities=17% Similarity=0.192 Sum_probs=104.5
Q ss_pred CceEEEecCCCchHHHHHHHHHHcCCceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCccccChHHHHHHHHHHhC
Q 024026 68 TRLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYG 147 (273)
Q Consensus 68 ~~l~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~~l~ES~aI~~YL~~~~~ 147 (273)
.+|+||+++.||+|++|+++|+|+|++|+.+.++.. .+.++++ ++||.|+||+|+| +|.+|+||.||++||+++|+
T Consensus 9 ~~~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~-~~~~~~~-~~nP~g~VPvL~~--~g~~l~ES~AIl~YL~~~~~ 84 (211)
T PRK09481 9 SVMTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKD-NLPQDLI-DLNPYQSVPTLVD--RELTLYESRIIMEYLDERFP 84 (211)
T ss_pred CeeEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCcc-cCCHHHH-HhCCCCCCCEEEE--CCEEeeCHHHHHHHHHHhCC
Confidence 379999999999999999999999999999999864 3445665 8999999999997 68999999999999999998
Q ss_pred CCCCCCCChhHHHHHHhhhhhHHhhcccchhhcccCCCCCchhhhhhhccCCchHHHHHHHHHhcCCceEEEE
Q 024026 148 KGRSPSTGLLESTLITGWMPTIFRAGRGMTLWEKARPDPPSKKLELFSYENNPYARIVREALCELELPYILQN 220 (273)
Q Consensus 148 ~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~i~ly~~~~s~~~~~v~~~L~e~gi~y~~~~ 220 (273)
.....+.++.+++.+.+|+.+ ....... ....... ..+...+.....+...+..++..|... +|++++
T Consensus 85 ~~~l~p~~~~~ra~~~~~~~~-~~~~~~~-~~~~~~~-~~~~~~~~~~~~l~~~l~~le~~L~~~--~~l~G~ 152 (211)
T PRK09481 85 HPPLMPVYPVARGESRLMMHR-IEKDWYS-LMNKIVN-GSASEADAARKQLREELLAIAPVFGEK--PYFMSE 152 (211)
T ss_pred CCCCCCCCHHHHHHHHHHHHH-HHHHHHH-HHHHHhc-CCHHHHHHHHHHHHHHHHHHHHHhccC--CcccCC
Confidence 654445677889999999873 2211110 0001111 112223333334555677788888654 888653
No 3
>PRK15113 glutathione S-transferase; Provisional
Probab=99.83 E-value=6.2e-20 Score=157.74 Aligned_cols=99 Identities=15% Similarity=0.142 Sum_probs=84.8
Q ss_pred CCceEEEecC--CCchHHHHHHHHHHcCCceEEEECCC--CChhhHHHHHHhCCCCcccEEEeCCCCccccChHHHHHHH
Q 024026 67 PTRLQLFEFE--ACPFCRRVREAITELDLSVEVFPCPK--GSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYL 142 (273)
Q Consensus 67 ~~~l~Ly~~~--~~p~~~~vr~~L~e~~l~~~~~~v~~--~~~~~~~~~~~~~p~~~vP~L~d~~~g~~l~ES~aI~~YL 142 (273)
.++++||+.+ .||+|++|+++|+|+||+|+.+.++. +++..++++ ++||.|+||+|+| +|.+|+||.||++||
T Consensus 3 ~~~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~-~~nP~g~VP~L~~--~~~~l~ES~aI~~YL 79 (214)
T PRK15113 3 KPAITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQ-GYSLTRRVPTLQH--DDFELSESSAIAEYL 79 (214)
T ss_pred CCeEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHH-hcCCCCCCCEEEE--CCEEEecHHHHHHHH
Confidence 3578999975 69999999999999999999998874 444556765 8999999999997 689999999999999
Q ss_pred HHHhCCCC---CCCCChhHHHHHHhhhhh
Q 024026 143 FQQYGKGR---SPSTGLLESTLITGWMPT 168 (273)
Q Consensus 143 ~~~~~~~~---~~~~~~~~~~~~~~wl~~ 168 (273)
+++|+... ..+.++.+++++++|+.+
T Consensus 80 ~~~~~~~~~~~l~p~~~~~ra~~~~~~~~ 108 (214)
T PRK15113 80 EERFAPPAWERIYPADLQARARARQIQAW 108 (214)
T ss_pred HHHcCCCCccccCCCCHHHHHHHHHHHHH
Confidence 99998643 456678899999999984
No 4
>PRK11752 putative S-transferase; Provisional
Probab=99.83 E-value=4e-20 Score=164.12 Aligned_cols=170 Identities=18% Similarity=0.284 Sum_probs=118.1
Q ss_pred HHhhhhhhccccCCcccccCCCCccccCCCCCCCceEEEecCCCchHHHHHHHHHHc------CCceEEEECCC--CChh
Q 024026 35 ATSSLSTLARLPWGSRSLSEGSDTQEISNSDSPTRLQLFEFEACPFCRRVREAITEL------DLSVEVFPCPK--GSIR 106 (273)
Q Consensus 35 ~~~~~~~~~r~~~g~~~~~~~~~~~~~~~~~~~~~l~Ly~~~~~p~~~~vr~~L~e~------~l~~~~~~v~~--~~~~ 106 (273)
-+++++.+.|...|++.. ..-+...++|+||+.+ ||+|+||+++|+|+ |++|+.+.|+. +++.
T Consensus 18 ~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~Ly~~~-s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~ 88 (264)
T PRK11752 18 NGGAFANINRPVAGATHE--------KTLPVGKHPLQLYSLG-TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQF 88 (264)
T ss_pred CCCcccccCCCCCCcchh--------cccCCCCCCeEEecCC-CCchHHHHHHHHHHHhccCCCCceEEEEecCcccccc
Confidence 356788889988887653 2223445689999975 99999999999997 89999987754 3445
Q ss_pred hHHHHHHhCCCCcccEEEeCCC--CccccChHHHHHHHHHHhCCCCCCCCChhHHHHHHhhhhhHHhhccc-c----hhh
Q 024026 107 HREMVRRLGGKEQFPFLIDPNT--GVSMYESGDIVNYLFQQYGKGRSPSTGLLESTLITGWMPTIFRAGRG-M----TLW 179 (273)
Q Consensus 107 ~~~~~~~~~p~~~vP~L~d~~~--g~~l~ES~aI~~YL~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~-~----~~~ 179 (273)
.++++ ++||.++||+|+|.++ |.+|+||.||++||+++|+. +.+.++.+++++++|+. |...... . ...
T Consensus 89 ~~e~~-~iNP~GkVP~Lv~~dg~~~~~L~ES~AIl~YL~~~~~~--L~P~~~~era~v~~wl~-~~~~~~~~~~~~~~~~ 164 (264)
T PRK11752 89 SSGFV-EINPNSKIPALLDRSGNPPIRVFESGAILLYLAEKFGA--FLPKDLAARTETLNWLF-WQQGSAPFLGGGFGHF 164 (264)
T ss_pred CHHHH-hhCCCCCCCEEEeCCCCCCeEEEcHHHHHHHHHHhcCC--cCCCCHHHHHHHHHHHH-HHhhhhhHHHHHHHHH
Confidence 66765 8999999999998421 46899999999999999973 33457788999999998 4332211 0 011
Q ss_pred cccCCCCCchhhhhhhccCCchHHHHHHHHHhcCCceEEE
Q 024026 180 EKARPDPPSKKLELFSYENNPYARIVREALCELELPYILQ 219 (273)
Q Consensus 180 ~~~~~~~~~~~i~ly~~~~s~~~~~v~~~L~e~gi~y~~~ 219 (273)
+...++.....++.+.......+..++.+|.+. +|+++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~L~~le~~L~~~--~fl~G 202 (264)
T PRK11752 165 YAYAPEKIEYAINRFTMEAKRQLDVLDKQLAEH--EYIAG 202 (264)
T ss_pred HHhCCccchHHHHHHHHHHHHHHHHHHHHhccC--CCCCC
Confidence 111122222233333344556777888888765 78754
No 5
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=99.82 E-value=7.3e-20 Score=157.30 Aligned_cols=144 Identities=21% Similarity=0.328 Sum_probs=101.6
Q ss_pred ceEEEecCCCchHHHHHHHHHHcCCceEEEECCC--CChhhHHHHHHhCCCCcccEEEeC---CCC--ccccChHHHHHH
Q 024026 69 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPK--GSIRHREMVRRLGGKEQFPFLIDP---NTG--VSMYESGDIVNY 141 (273)
Q Consensus 69 ~l~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~--~~~~~~~~~~~~~p~~~vP~L~d~---~~g--~~l~ES~aI~~Y 141 (273)
||+||+.+ +|+|++|+++|+|+||+|+.+.++. +++..++++ ++||.|+||+|+|. ++| .+|+||.||++|
T Consensus 1 m~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~-~iNP~gkVP~L~~~~~~d~g~~~~L~ES~AI~~Y 78 (215)
T PRK13972 1 MIDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFL-RISPNNKIPAIVDHSPADGGEPLSLFESGAILLY 78 (215)
T ss_pred CeEEEECC-CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHH-hhCcCCCCCEEEeCCCCCCCCceeEEcHHHHHHH
Confidence 58999887 7999999999999999999988764 344456765 89999999999973 245 479999999999
Q ss_pred HHHHhCCCCCCCCChhHHHHHHhhhhhHHhhcccchh----hcc-cCCCCCchhhhhhhccCCchHHHHHHHHHhcCCce
Q 024026 142 LFQQYGKGRSPSTGLLESTLITGWMPTIFRAGRGMTL----WEK-ARPDPPSKKLELFSYENNPYARIVREALCELELPY 216 (273)
Q Consensus 142 L~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~----~~~-~~~~~~~~~i~ly~~~~s~~~~~v~~~L~e~gi~y 216 (273)
|+++|+ ..++.++.+++++++|+. |......... ++. ..+...+...+.........+..++.+|.+. +|
T Consensus 79 L~~~~~--~l~p~~~~~ra~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~--~~ 153 (215)
T PRK13972 79 LAEKTG--LFLSHETRERAATLQWLF-WQVGGLGPMLGQNHHFNHAAPQTIPYAIERYQVETQRLYHVLNKRLENS--PW 153 (215)
T ss_pred HHHhcC--CCCCCCHHHHHHHHHHHH-HHhhccCcceeeeeeeeccCCCCCchHHHHHHHHHHHHHHHHHHHhccC--cc
Confidence 999986 244556788999999998 4333222111 111 1111122333444444556677788888765 78
Q ss_pred EEE
Q 024026 217 ILQ 219 (273)
Q Consensus 217 ~~~ 219 (273)
+++
T Consensus 154 l~G 156 (215)
T PRK13972 154 LGG 156 (215)
T ss_pred ccC
Confidence 754
No 6
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=9.4e-20 Score=156.08 Aligned_cols=183 Identities=17% Similarity=0.253 Sum_probs=120.6
Q ss_pred eEEEecCCCchHHHHHHHHHHcCCceEEEECCCCC-hhhHHHHHHhCCCCcccEEEeCCCCccccChHHHHHHHHHHhCC
Q 024026 70 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGS-IRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYGK 148 (273)
Q Consensus 70 l~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~~~-~~~~~~~~~~~p~~~vP~L~d~~~g~~l~ES~aI~~YL~~~~~~ 148 (273)
++||+.+.||+|+||+++|.|+|++|+.+.++... ...++++ ++||.|+||+|+++ +|.+|+||.||++||+++|+.
T Consensus 1 ~~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~-~~nP~gkVPvL~~~-~~~~l~ES~AI~~YL~~~~~~ 78 (211)
T COG0625 1 MKLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDFL-ALNPLGKVPALVDD-DGEVLTESGAILEYLAERYPG 78 (211)
T ss_pred CeeecCCCCcchHHHHHHHHHcCCCceEEEeCcccccCCHHHH-hcCCCCCCCEEeeC-CCCeeecHHHHHHHHHhhCCC
Confidence 57999999999999999999999999999987663 4556665 99999999999984 555899999999999999987
Q ss_pred CCCCCCCh---hHHHHHHhhhhhHHhhcccchhhcc---cCC--CC-CchhhhhhhccCCchHHHHHHHHHhcCCceEEE
Q 024026 149 GRSPSTGL---LESTLITGWMPTIFRAGRGMTLWEK---ARP--DP-PSKKLELFSYENNPYARIVREALCELELPYILQ 219 (273)
Q Consensus 149 ~~~~~~~~---~~~~~~~~wl~~~~~~~~~~~~~~~---~~~--~~-~~~~i~ly~~~~s~~~~~v~~~L~e~gi~y~~~ 219 (273)
..+.|.++ .+|+.+.+|+. +............ ... .. .....+.........+..++..|+.. +|+++
T Consensus 79 ~~l~p~~~~~r~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~--~~l~G 155 (211)
T COG0625 79 PPLLPADPLARRARALLLWWLF-FAASDLHPVIGQRRRALLGSEPELLEAALEAARAEIRALLALLEALLADG--PYLAG 155 (211)
T ss_pred CCcCCCCchhHHHHHHHHHHHH-HHHhcccHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHhccC--CcccC
Confidence 63334333 37888889988 5444333211110 011 11 23344444455667777888888875 78765
Q ss_pred EcCCCCCCchhHHhhcCCCcccEEEcCCCCeeeccHHHHHHHHHhhc
Q 024026 220 NVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSY 266 (273)
Q Consensus 220 ~v~~~~~~~~~~~~~~~~~~VP~l~d~~~~~~l~eS~~I~~yL~~~y 266 (273)
+ ...-.+-++. +. +..+.. .+....++.+|.+|.++.-
T Consensus 156 ~---~~tiAD~~~~--~~--~~~~~~--~~~~~~~~p~l~~w~~r~~ 193 (211)
T COG0625 156 D---RFTIADIALA--PL--LWRLAL--LGEELADYPALKAWYERVL 193 (211)
T ss_pred C---CCCHHHHHHH--HH--HHHhhh--cCcccccChHHHHHHHHHH
Confidence 3 1111121111 10 011111 1112257899999998764
No 7
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1e-19 Score=147.61 Aligned_cols=149 Identities=14% Similarity=0.115 Sum_probs=109.2
Q ss_pred ceEEEecCCCchHHHHHHHHHHcCCceEEEECCC--CChhhHHHHHHhCCCCcccEEEeCCCCccccChHHHHHHHHHHh
Q 024026 69 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPK--GSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQY 146 (273)
Q Consensus 69 ~l~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~--~~~~~~~~~~~~~p~~~vP~L~d~~~g~~l~ES~aI~~YL~~~~ 146 (273)
+.+||+|..|..++|||++|..+||||++++|+. ++.+....++++||.++||.|++ +|.+|.||.||++||+++|
T Consensus 5 KpiLYSYWrSSCswRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i--~g~tl~eS~AII~YLeEt~ 82 (217)
T KOG0868|consen 5 KPILYSYWRSSCSWRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVI--DGLTLTESLAIIEYLEETY 82 (217)
T ss_pred cchhhhhhcccchHHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCchhhCCeEEE--CCEEeehHHHHHHHHHhcC
Confidence 5679999999999999999999999999998863 32333334569999999999997 8999999999999999999
Q ss_pred CCCCCCCCChhHHHHHHhhhhhHHhhcccc----hhhcccCCCCCchhhhhhhccCCchHHHHHHHHHhcCCceEEEE
Q 024026 147 GKGRSPSTGLLESTLITGWMPTIFRAGRGM----TLWEKARPDPPSKKLELFSYENNPYARIVREALCELELPYILQN 220 (273)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~----~~~~~~~~~~~~~~i~ly~~~~s~~~~~v~~~L~e~gi~y~~~~ 220 (273)
+++.++|.++..|+..++... ...++... ..+.....+.+..-.....+....-+..++..|....+.|-+++
T Consensus 83 P~ppLLP~d~~KRA~~r~i~~-~i~sgIQPlQNl~vl~~l~ek~~~~~~~W~q~~ItkGF~ALEklL~~~aGkycvGD 159 (217)
T KOG0868|consen 83 PDPPLLPKDPHKRAKARAISL-LIASGIQPLQNLSVLKMLNEKEPGYGDQWAQHFITKGFTALEKLLKSHAGKYCVGD 159 (217)
T ss_pred CCCCCCCcCHHHHHHHHHHHH-HHHhCCCcchhhHHHHHhcccccchhhHHHHHHHHHhHHHHHHHHHHccCCcccCc
Confidence 988877888888998888776 44444331 11111111122122222234456667888999987767786653
No 8
>PLN02473 glutathione S-transferase
Probab=99.79 E-value=5.6e-19 Score=151.43 Aligned_cols=145 Identities=14% Similarity=0.118 Sum_probs=104.1
Q ss_pred ceEEEecCCCchHHHHHHHHHHcCCceEEEECCCC--ChhhHHHHHHhCCCCcccEEEeCCCCccccChHHHHHHHHHHh
Q 024026 69 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKG--SIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQY 146 (273)
Q Consensus 69 ~l~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~~--~~~~~~~~~~~~p~~~vP~L~d~~~g~~l~ES~aI~~YL~~~~ 146 (273)
-|+||+++.||+|+||+++|+|+||+|+.+.++.. +...++++ ++||.|+||+|+| +|.+|+||.+|++||+++|
T Consensus 2 ~~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~-~~nP~g~vP~L~~--~g~~l~ES~aI~~YL~~~~ 78 (214)
T PLN02473 2 VVKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHL-LRQPFGQVPAIED--GDLKLFESRAIARYYATKY 78 (214)
T ss_pred ceEEecCCCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHH-hhCCCCCCCeEEE--CCEEEEehHHHHHHHHHHc
Confidence 47999999999999999999999999999887643 45667776 7999999999997 6899999999999999999
Q ss_pred CCC--CCCCCChhHHHHHHhhhhhHHhhccc----chh---hcccC-C-CCCchhhhhhhccCCchHHHHHHHHHhcCCc
Q 024026 147 GKG--RSPSTGLLESTLITGWMPTIFRAGRG----MTL---WEKAR-P-DPPSKKLELFSYENNPYARIVREALCELELP 215 (273)
Q Consensus 147 ~~~--~~~~~~~~~~~~~~~wl~~~~~~~~~----~~~---~~~~~-~-~~~~~~i~ly~~~~s~~~~~v~~~L~e~gi~ 215 (273)
+.. ...+.+..+++++.+|+.+ ...... ... .+... . .......+.....+...+..++..|+.. +
T Consensus 79 ~~~~~~l~p~~~~~ra~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~--~ 155 (214)
T PLN02473 79 ADQGTDLLGKTLEHRAIVDQWVEV-ENNYFYAVALPLVINLVFKPRLGEPCDVALVEELKVKFDKVLDVYENRLATN--R 155 (214)
T ss_pred CCcCCCCCCCCHHHHHHHHHHHHH-HHhcccHHHHHHHHHHHhcccccCCCChHHHHHHHHHHHHHHHHHHHHhccC--C
Confidence 753 2345667889999999973 332221 001 11101 1 1122233333344556677788888665 7
Q ss_pred eEEE
Q 024026 216 YILQ 219 (273)
Q Consensus 216 y~~~ 219 (273)
|+++
T Consensus 156 ~l~G 159 (214)
T PLN02473 156 YLGG 159 (214)
T ss_pred cccC
Confidence 8764
No 9
>PRK10542 glutathionine S-transferase; Provisional
Probab=99.77 E-value=1.9e-18 Score=146.55 Aligned_cols=145 Identities=17% Similarity=0.190 Sum_probs=100.9
Q ss_pred eEEEecCCCchHHHHHHHHHHcCCceEEEECCCC--C-hhhHHHHHHhCCCCcccEEEeCCCCccccChHHHHHHHHHHh
Q 024026 70 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKG--S-IRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQY 146 (273)
Q Consensus 70 l~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~~--~-~~~~~~~~~~~p~~~vP~L~d~~~g~~l~ES~aI~~YL~~~~ 146 (273)
|+||+... +++++|+++|+++||+|+.+.++.. + ...+++ .++||.|+||+|++ ++|.+|+||.+|++||+++|
T Consensus 1 m~l~~~~~-s~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~-~~~nP~g~vPvL~~-~~g~~l~eS~aI~~YL~~~~ 77 (201)
T PRK10542 1 MKLFYKPG-ACSLASHITLRESGLDFTLVSVDLAKKRLENGDDY-LAINPKGQVPALLL-DDGTLLTEGVAIMQYLADSV 77 (201)
T ss_pred Cceeeccc-HHHHHHHHHHHHcCCCceEEEeecccccccCChHH-HHhCcCCCCCeEEe-CCCcEeecHHHHHHHHHHhC
Confidence 57999875 4799999999999999999887642 2 233555 49999999999986 37899999999999999999
Q ss_pred CCCC-CCCCChhHHHHHHhhhhhHHhhcccchhhcccCCCCCchhhhhhhccCCchHHHHHHHHHhcCCceEEEE
Q 024026 147 GKGR-SPSTGLLESTLITGWMPTIFRAGRGMTLWEKARPDPPSKKLELFSYENNPYARIVREALCELELPYILQN 220 (273)
Q Consensus 147 ~~~~-~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~i~ly~~~~s~~~~~v~~~L~e~gi~y~~~~ 220 (273)
+... .++.++.+++++++|+.+ ..............+..++...+.........+..++..|... +|++++
T Consensus 78 ~~~~l~~p~~~~~ra~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~--~~l~G~ 149 (201)
T PRK10542 78 PDRQLLAPVGSLSRYHTIEWLNY-IATELHKGFTPLFRPDTPEEYKPTVRAQLEKKFQYVDEALADE--QWICGQ 149 (201)
T ss_pred cccccCCCCCcHHHHHHHHHHHH-HHhhhhhhhhhccCCCChHHHHHHHHHHHHHHHHHHHHHhcCC--CeeeCC
Confidence 8654 335567789999999984 3222111111111222222223334445566778888888765 788653
No 10
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=99.77 E-value=1.3e-18 Score=125.13 Aligned_cols=74 Identities=28% Similarity=0.533 Sum_probs=66.1
Q ss_pred EEecCCCchHHHHHHHHHHcCCceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCccccChHHHHHHHHHHhCCC
Q 024026 72 LFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYGKG 149 (273)
Q Consensus 72 Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~~l~ES~aI~~YL~~~~~~~ 149 (273)
||+++.||||+|||++|+++||+|+.++++..+. ..+ +.++||.++||+|++ +|..|+||.+|++||+++|+++
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~-~~~-~~~~~p~~~vPvL~~--~g~~l~dS~~I~~yL~~~~~~~ 74 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPEEK-RPE-FLKLNPKGKVPVLVD--DGEVLTDSAAIIEYLEERYPGP 74 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTTST-SHH-HHHHSTTSBSSEEEE--TTEEEESHHHHHHHHHHHSTSS
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCcccc-hhH-HHhhcccccceEEEE--CCEEEeCHHHHHHHHHHHcCCC
Confidence 7999999999999999999999999999976542 344 459999999999996 6999999999999999999854
No 11
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=99.75 E-value=7e-18 Score=144.02 Aligned_cols=146 Identities=13% Similarity=0.082 Sum_probs=104.0
Q ss_pred EEEecCCCchHHHHHHHHHHcCCceEEEECCCC---ChhhHHHHHHhCCCCcccEEEeCCCCccccChHHHHHHHHHHhC
Q 024026 71 QLFEFEACPFCRRVREAITELDLSVEVFPCPKG---SIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYG 147 (273)
Q Consensus 71 ~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~~---~~~~~~~~~~~~p~~~vP~L~d~~~g~~l~ES~aI~~YL~~~~~ 147 (273)
+||++..||+|++||++|+++||+|+.+.++.. ++..+++ +++||.++||+|+| +|..|+||.+|++||+++|+
T Consensus 1 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~-~~~nP~g~vP~L~~--~g~~l~ES~aI~~yl~~~~~ 77 (210)
T TIGR01262 1 KLYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEF-LALNPQGLVPTLDI--DGEVLTQSLAIIEYLEETYP 77 (210)
T ss_pred CcccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhh-hhcCCCCcCCEEEE--CCEEeecHHHHHHHHHHhCC
Confidence 489988999999999999999999999988742 3334555 58999999999997 78999999999999999998
Q ss_pred CCCCCCCChhHHHHHHhhhhhHHhhccc------chhhc-ccCCCCCchhhhhhhccCCchHHHHHHHHHhcCCceEEEE
Q 024026 148 KGRSPSTGLLESTLITGWMPTIFRAGRG------MTLWE-KARPDPPSKKLELFSYENNPYARIVREALCELELPYILQN 220 (273)
Q Consensus 148 ~~~~~~~~~~~~~~~~~wl~~~~~~~~~------~~~~~-~~~~~~~~~~i~ly~~~~s~~~~~v~~~L~e~gi~y~~~~ 220 (273)
.....+.+..+++.+.+|+.+ ...... ...+. ...........+.....+.+.+..++..|.+.+.+|++++
T Consensus 78 ~~~l~p~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~ 156 (210)
T TIGR01262 78 DPPLLPADPIKRARVRALALL-IACDIHPLNNLRVLQYLREKLGVEEEARNRWYQHWISKGFAALEALLQPHAGAFCVGD 156 (210)
T ss_pred CCCCCCCCHHHHHHHHHHHHH-HhcccChhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEeeCC
Confidence 654445677899999999883 322211 00011 1101111122222333456778889999987655798754
No 12
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=99.75 E-value=3.3e-18 Score=122.24 Aligned_cols=72 Identities=26% Similarity=0.480 Sum_probs=63.1
Q ss_pred eEEEecCCCchHHHHHHHHHHcCCceEEEECCC--CChhhHHHHHHhCCCCcccEEEeCCCCccccChHHHHHHHHH
Q 024026 70 LQLFEFEACPFCRRVREAITELDLSVEVFPCPK--GSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQ 144 (273)
Q Consensus 70 l~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~--~~~~~~~~~~~~~p~~~vP~L~d~~~g~~l~ES~aI~~YL~~ 144 (273)
|+||+++.||+|++|+++|+++|++|+.+.++. ++...+++. ++||.++||+|++ +|..|+||.||++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~-~~~p~~~vP~l~~--~~~~l~es~aI~~yL~~ 74 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFL-KLNPQHTVPTLVD--NGFVLWESHAILIYLVE 74 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHH-hhCcCCCCCEEEE--CCEEEEcHHHHHHHHhC
Confidence 589999999999999999999999999998863 333445654 8999999999997 58899999999999974
No 13
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.75 E-value=3.8e-18 Score=122.21 Aligned_cols=71 Identities=23% Similarity=0.339 Sum_probs=62.3
Q ss_pred eEEEecCCCchHHHHHHHHHHcCCceEEEECCC--CChhhHHHHHHhCCCCcccEEEeCCCCccccChHHHHHHHH
Q 024026 70 LQLFEFEACPFCRRVREAITELDLSVEVFPCPK--GSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLF 143 (273)
Q Consensus 70 l~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~--~~~~~~~~~~~~~p~~~vP~L~d~~~g~~l~ES~aI~~YL~ 143 (273)
++||+++.||+|+|||++|+|+|++|+.+.++. ++++.++++ ++||.++||+|++ +|..|+||.+|++||+
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~-~inP~g~vP~L~~--~g~~l~Es~aI~~yLe 73 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFM-RLNPTGEVPVLIH--GDNIICDPTQIIDYLE 73 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHH-HhCcCCCCCEEEE--CCEEEEcHHHHHHHhC
Confidence 479999999999999999999999999998754 334455665 9999999999997 7899999999999984
No 14
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=99.74 E-value=7.5e-18 Score=122.76 Aligned_cols=78 Identities=28% Similarity=0.539 Sum_probs=66.4
Q ss_pred ceEEEecCCCchHHHHHHHHHHcCCceEEEECCC--CChhhHHHHHHhCCCCcccEEEeCC-CCccccChHHHHHHHHHH
Q 024026 69 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPK--GSIRHREMVRRLGGKEQFPFLIDPN-TGVSMYESGDIVNYLFQQ 145 (273)
Q Consensus 69 ~l~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~--~~~~~~~~~~~~~p~~~vP~L~d~~-~g~~l~ES~aI~~YL~~~ 145 (273)
|++||+++. |+|++|+++|+++||+|+.+.++. +....+++. ++||.++||+|++++ +|..|+||.+|++||+++
T Consensus 1 ~~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~-~~~p~~~vP~l~~~~~~g~~l~eS~aI~~yL~~~ 78 (81)
T cd03048 1 MITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFL-KINPNGRIPAIVDHNGTPLTVFESGAILLYLAEK 78 (81)
T ss_pred CeEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHH-HhCcCCCCCEEEeCCCCceEEEcHHHHHHHHHHH
Confidence 589999985 999999999999999999998873 334455654 899999999999842 188999999999999999
Q ss_pred hCC
Q 024026 146 YGK 148 (273)
Q Consensus 146 ~~~ 148 (273)
|+.
T Consensus 79 ~~~ 81 (81)
T cd03048 79 YDK 81 (81)
T ss_pred hCC
Confidence 973
No 15
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.74 E-value=8e-18 Score=119.82 Aligned_cols=73 Identities=25% Similarity=0.402 Sum_probs=64.5
Q ss_pred eEEEecCCCchHHHHHHHHHHcCCceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCccccChHHHHHHHHHHh
Q 024026 70 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQY 146 (273)
Q Consensus 70 l~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~~l~ES~aI~~YL~~~~ 146 (273)
|+||+.+.||+|++++++|+++|++|+.+.++.. ...+++ +++||.++||+|++ +|..|+||.+|++||+++|
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~-~~~~~~-~~~~p~~~vP~l~~--~~~~l~es~aI~~yL~~~~ 73 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPD-NPPEDL-AELNPYGTVPTLVD--RDLVLYESRIIMEYLDERF 73 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCCC-CCCHHH-HhhCCCCCCCEEEE--CCEEEEcHHHHHHHHHhhC
Confidence 6899999999999999999999999999988754 234455 58999999999997 5789999999999999876
No 16
>PLN02395 glutathione S-transferase
Probab=99.73 E-value=2.5e-17 Score=141.15 Aligned_cols=145 Identities=14% Similarity=0.186 Sum_probs=101.0
Q ss_pred ceEEEecCCCchHHHHHHHHHHcCCceEEEECCC--CChhhHHHHHHhCCCCcccEEEeCCCCccccChHHHHHHHHHHh
Q 024026 69 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPK--GSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQY 146 (273)
Q Consensus 69 ~l~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~--~~~~~~~~~~~~~p~~~vP~L~d~~~g~~l~ES~aI~~YL~~~~ 146 (273)
.++||+.+. ++++||+++|+|+|++|+.+.++. ++...++++ ++||.|+||+|+| +|.+|+||.+|++||+++|
T Consensus 2 ~~~ly~~~~-~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~-~~nP~g~vP~L~~--~~~~l~ES~aI~~YL~~~~ 77 (215)
T PLN02395 2 VLKVYGPAF-ASPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYL-ALQPFGVVPVIVD--GDYKIFESRAIMRYYAEKY 77 (215)
T ss_pred eEEEEcCCc-CcHHHHHHHHHHcCCCceEEEeccccCCcCCHHHH-hhCCCCCCCEEEE--CCEEEEcHHHHHHHHHHHc
Confidence 479999765 468999999999999999988764 334456665 8999999999997 6789999999999999999
Q ss_pred CCC--CCCCCChhHHHHHHhhhhhHHhhccc--c--hhh---c-cc-CCCCCchhhhhhhccCCchHHHHHHHHHhcCCc
Q 024026 147 GKG--RSPSTGLLESTLITGWMPTIFRAGRG--M--TLW---E-KA-RPDPPSKKLELFSYENNPYARIVREALCELELP 215 (273)
Q Consensus 147 ~~~--~~~~~~~~~~~~~~~wl~~~~~~~~~--~--~~~---~-~~-~~~~~~~~i~ly~~~~s~~~~~v~~~L~e~gi~ 215 (273)
+.. ...+.++.+++++.+|+. +...... . ..+ + .. .....+...+.......+.+..++..|+.. +
T Consensus 78 ~~~~~~l~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~--~ 154 (215)
T PLN02395 78 RSQGPDLLGKTIEERGQVEQWLD-VEATSYHPPLLNLTLHILFASKMGFPADEKVIKESEEKLAKVLDVYEARLSKS--K 154 (215)
T ss_pred CCCCcCcCCCChhHHHHHHHHHH-HHHHhcCchHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHhcCC--c
Confidence 752 244567788999999998 4332211 0 010 1 10 111122233344445566777788888755 7
Q ss_pred eEEEE
Q 024026 216 YILQN 220 (273)
Q Consensus 216 y~~~~ 220 (273)
|++++
T Consensus 155 ~l~G~ 159 (215)
T PLN02395 155 YLAGD 159 (215)
T ss_pred cccCC
Confidence 87653
No 17
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=2.7e-17 Score=140.86 Aligned_cols=97 Identities=20% Similarity=0.218 Sum_probs=86.5
Q ss_pred CceEEEecCCCchHHHHHHHHHHcCCceEEEECCCCChhhHHHHHHhC-CCCcccEEEeCCCCccccChHHHHHHHHHHh
Q 024026 68 TRLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLG-GKEQFPFLIDPNTGVSMYESGDIVNYLFQQY 146 (273)
Q Consensus 68 ~~l~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~~~~~~~~~~~~~~-p~~~vP~L~d~~~g~~l~ES~aI~~YL~~~~ 146 (273)
..++||++..|||++||+++|+++||+|++++++..+ +++++++.| +.++||||+. +|..|+||..|++||+++|
T Consensus 8 ~~vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~~--Ks~~ll~~np~hkKVPvL~H--n~k~i~ESliiveYiDe~w 83 (231)
T KOG0406|consen 8 GTVKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLTN--KSEWLLEKNPVHKKVPVLEH--NGKPICESLIIVEYIDETW 83 (231)
T ss_pred CeEEEEEeecChHHHHHHHHHHhcCCceEEEecCCCC--CCHHHHHhccccccCCEEEE--CCceehhhHHHHHHHHhhc
Confidence 5799999999999999999999999999999998754 455666899 6999999995 7888999999999999999
Q ss_pred CC-CCCCCCChhHHHHHHhhhhh
Q 024026 147 GK-GRSPSTGLLESTLITGWMPT 168 (273)
Q Consensus 147 ~~-~~~~~~~~~~~~~~~~wl~~ 168 (273)
+. ....|.|+.+|++.+-|+..
T Consensus 84 ~~~~~iLP~DPy~Ra~arfwa~~ 106 (231)
T KOG0406|consen 84 PSGPPILPSDPYERAQARFWAEY 106 (231)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHH
Confidence 95 55668899999999999984
No 18
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=99.72 E-value=1.6e-17 Score=117.92 Aligned_cols=71 Identities=30% Similarity=0.491 Sum_probs=61.5
Q ss_pred eEEEecCCCchHHHHHHHHHHcCCceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCccccChHHHHHHHHH
Q 024026 70 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQ 144 (273)
Q Consensus 70 l~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~~l~ES~aI~~YL~~ 144 (273)
|+||+++.||||+|||++|.++|++|+.+.++...+ ...+ +.+|.++||+|+++ +|..|+||.+|++||++
T Consensus 1 ~~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~~--~~~~-~~~~~~~vP~L~~~-~~~~l~es~aI~~yL~~ 71 (71)
T cd03037 1 MKLYIYEHCPFCVKARMIAGLKNIPVEQIILQNDDE--ATPI-RMIGAKQVPILEKD-DGSFMAESLDIVAFIDE 71 (71)
T ss_pred CceEecCCCcHhHHHHHHHHHcCCCeEEEECCCCch--HHHH-HhcCCCccCEEEeC-CCeEeehHHHHHHHHhC
Confidence 579999999999999999999999999998875432 2334 78999999999973 58999999999999974
No 19
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=3.8e-17 Score=141.84 Aligned_cols=185 Identities=20% Similarity=0.253 Sum_probs=128.0
Q ss_pred ceEEEecCCCchHHHHHHHHHHcCCceEEEECC--CCChhhHHHHHHhCCCCcccEEEeCCCCccccChHHHHHHHHHHh
Q 024026 69 RLQLFEFEACPFCRRVREAITELDLSVEVFPCP--KGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQY 146 (273)
Q Consensus 69 ~l~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~--~~~~~~~~~~~~~~p~~~vP~L~d~~~g~~l~ES~aI~~YL~~~~ 146 (273)
.++||+++.+|.|++|.+++.++|++|+.+.++ .+++..++|+ ++||.++||+|+| +|..++||.||+.||+++|
T Consensus 2 ~~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl-~~nP~~kVP~l~d--~~~~l~eS~AI~~Yl~~ky 78 (226)
T KOG0867|consen 2 KLKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFL-KLNPLGKVPALED--GGLTLWESHAILRYLAEKY 78 (226)
T ss_pred CceEeecCCCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHH-hcCcCCCCCeEec--CCeEEeeHHHHHHHHHHHc
Confidence 578999999999999999999999999998654 5677888887 9999999999998 5999999999999999999
Q ss_pred C-CCC-CCCCChhHHHHHHhhhhhHHhhcccchh-hc----c--cCCCCCchhhhhhhccCCchHHHHHHHHHhcCCceE
Q 024026 147 G-KGR-SPSTGLLESTLITGWMPTIFRAGRGMTL-WE----K--ARPDPPSKKLELFSYENNPYARIVREALCELELPYI 217 (273)
Q Consensus 147 ~-~~~-~~~~~~~~~~~~~~wl~~~~~~~~~~~~-~~----~--~~~~~~~~~i~ly~~~~s~~~~~v~~~L~e~gi~y~ 217 (273)
+ .+. +++.+..+++.+.+|++ +......... +. . ..........+.....+...+..++..|... +|+
T Consensus 79 ~~~~~~l~p~~~~~ra~v~~~l~-~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~--~yl 155 (226)
T KOG0867|consen 79 GPLGGILLPKDLKERAIVDQWLE-FENGVLDPVTFERPILAPLLVGLPLNPTAVKELEAKLRKALDNLERFLKTQ--VYL 155 (226)
T ss_pred CCCCcccCCcCHHHHHHHHHHHH-hhhcccccccccceeeecceecccCcchhhHHHHHHHHHHHHHHHHHHccC--Ccc
Confidence 7 233 56778889999999998 5554433211 11 1 1111123333444455667778888888886 787
Q ss_pred EEEcCCCCCCchhHHhhcCCCcc-cEEEcCCCCeeeccHHHHHHHHHhhc
Q 024026 218 LQNVGDGSSRTKLLVDITGSKEV-PYLIDPNTSTQIGDYKKILSYLFQSY 266 (273)
Q Consensus 218 ~~~v~~~~~~~~~~~~~~~~~~V-P~l~d~~~~~~l~eS~~I~~yL~~~y 266 (273)
.++ ..--.++.-+...... +... +.....+..++.+|+++..
T Consensus 156 ~g~----~~tlADl~~~~~~~~~~~~~~---~~~~~~~~p~v~~W~~~~~ 198 (226)
T KOG0867|consen 156 AGD----QLTLADLSLASTLSQFQGKFA---TEKDFEKYPKVARWYERIQ 198 (226)
T ss_pred cCC----cccHHHHHHhhHHHHHhHhhh---hhhhhhhChHHHHHHHHHH
Confidence 542 1111222222221111 1111 1234567899999998764
No 20
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=99.72 E-value=2.8e-17 Score=116.83 Aligned_cols=69 Identities=28% Similarity=0.424 Sum_probs=60.9
Q ss_pred EEEecCCCchHHHHHHHHHHcCCceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCccccChHHHHHHH
Q 024026 71 QLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYL 142 (273)
Q Consensus 71 ~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~~l~ES~aI~~YL 142 (273)
+||+++.||+|+||+++|+++|++|+.+.++... ..+++ +++||.++||+|+++ +|..|+||.+|++|+
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~~-~~~~~-~~~np~~~vP~L~~~-~g~~l~eS~aI~~y~ 70 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGITVELREVELKN-KPAEM-LAASPKGTVPVLVLG-NGTVIEESLDIMRWA 70 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCCC-CCHHH-HHHCCCCCCCEEEEC-CCcEEecHHHHHHhh
Confidence 7999999999999999999999999999987643 23454 589999999999983 699999999999996
No 21
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=99.72 E-value=2.8e-17 Score=117.66 Aligned_cols=73 Identities=25% Similarity=0.313 Sum_probs=63.7
Q ss_pred eEEEecCCCchHHHHHHHHHHcCCceEEEECCCCChhhHHHHHHhCCC-CcccEEEeCCCCccccChHHHHHHHHHHh
Q 024026 70 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGK-EQFPFLIDPNTGVSMYESGDIVNYLFQQY 146 (273)
Q Consensus 70 l~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~~~~~~~~~~~~~~p~-~~vP~L~d~~~g~~l~ES~aI~~YL~~~~ 146 (273)
|+||+++.||+|+|+|++|+++|++|+.+.++.. .+.+++ +++||. ++||+|++ +|..++||.+|++||++++
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~-~~~~~~-~~~~p~~~~vP~l~~--~~~~l~eS~aI~~yL~~~~ 74 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDLG-NKSELL-LASNPVHKKIPVLLH--NGKPICESLIIVEYIDEAW 74 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCcc-cCCHHH-HHhCCCCCCCCEEEE--CCEEeehHHHHHHHHHhhC
Confidence 6899999999999999999999999999887654 334555 489995 99999997 5889999999999999875
No 22
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=99.71 E-value=4.6e-17 Score=117.37 Aligned_cols=75 Identities=24% Similarity=0.507 Sum_probs=63.7
Q ss_pred ceEEEecCCCchHHHHHHHHHHcCCceEEEECCCCChhhHHHHHHhCCCCcccEEEeCC--CCccccChHHHHHHHHHHh
Q 024026 69 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPN--TGVSMYESGDIVNYLFQQY 146 (273)
Q Consensus 69 ~l~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~--~g~~l~ES~aI~~YL~~~~ 146 (273)
+++||+++.||||+|||++|.++||+|+.++++... ..+ + +.||.++||+|++++ +|.+|+||.+|++||+++.
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~~~--~~~-~-~~~~~~~vP~l~~~~~~~~~~l~eS~~I~~yL~~~~ 76 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNPVS--RKE-I-KWSSYKKVPILRVESGGDGQQLVDSSVIISTLKTYL 76 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCceEEEECCchh--HHH-H-HHhCCCccCEEEECCCCCccEEEcHHHHHHHHHHHc
Confidence 479999999999999999999999999999886422 223 4 679999999999742 4789999999999999975
Q ss_pred C
Q 024026 147 G 147 (273)
Q Consensus 147 ~ 147 (273)
|
T Consensus 77 ~ 77 (77)
T cd03040 77 G 77 (77)
T ss_pred C
Confidence 4
No 23
>PRK10357 putative glutathione S-transferase; Provisional
Probab=99.70 E-value=7.4e-17 Score=137.06 Aligned_cols=138 Identities=15% Similarity=0.137 Sum_probs=95.4
Q ss_pred eEEEecCCCchHHHHHHHHHHcCCceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCccccChHHHHHHHHHHhCCC
Q 024026 70 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYGKG 149 (273)
Q Consensus 70 l~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~~l~ES~aI~~YL~~~~~~~ 149 (273)
|+||++..||++++||++|+++||+|+.+.++... ...+ +.++||.++||+|++. +|.+|+||.+|++||+++|+..
T Consensus 1 ~~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~~-~~~~-~~~~nP~g~vP~L~~~-~g~~l~eS~aI~~yL~~~~~~~ 77 (202)
T PRK10357 1 MKLIGSYTSPFVRKISILLLEKGITFEFVNELPYN-ADNG-VAQYNPLGKVPALVTE-EGECWFDSPIIAEYIELLNVAP 77 (202)
T ss_pred CeeecCCCCchHHHHHHHHHHcCCCCeEEecCCCC-Cchh-hhhcCCccCCCeEEeC-CCCeeecHHHHHHHHHHhCCCC
Confidence 58999999999999999999999999998876422 1233 4478999999999852 7899999999999999998654
Q ss_pred CCCCCChhHHHHHHhhhhhHHhhcccchh--hc-ccCC--CCCchhhhhhhccCCchHHHHHHHHHh
Q 024026 150 RSPSTGLLESTLITGWMPTIFRAGRGMTL--WE-KARP--DPPSKKLELFSYENNPYARIVREALCE 211 (273)
Q Consensus 150 ~~~~~~~~~~~~~~~wl~~~~~~~~~~~~--~~-~~~~--~~~~~~i~ly~~~~s~~~~~v~~~L~e 211 (273)
...+.++.+++.+++|+. +......... .. ...+ ...+..++.....+...+..++..|..
T Consensus 78 ~l~p~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~ 143 (202)
T PRK10357 78 AMLPRDPLAALRVRQLEA-LADGIMDAALVSVREQARPAAQQSEDELLRQREKINRSLDALEGYLVD 143 (202)
T ss_pred CCCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 445567778888988876 3332211111 11 1111 112222333334455667777777764
No 24
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=99.70 E-value=6.2e-17 Score=116.43 Aligned_cols=74 Identities=19% Similarity=0.240 Sum_probs=64.3
Q ss_pred eEEEecCCCchHHHHHHHHHHcCCceEEEECCCC--ChhhHHHHHHhCCCCcccEEEeCCCCccccChHHHHHHHHHHh
Q 024026 70 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKG--SIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQY 146 (273)
Q Consensus 70 l~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~~--~~~~~~~~~~~~p~~~vP~L~d~~~g~~l~ES~aI~~YL~~~~ 146 (273)
++||+++.|++|++|+++|+++|++|+.+.++.. +...+++ .++||.++||+|++ +|..|+||.||++||+++|
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~-~~~~p~~~vP~L~~--~~~~l~eS~aI~~Yl~~~~ 76 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEF-KKINPFGKVPAIVD--GDFTLAESVAILRYLARKF 76 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHH-HHhCcCCCCCEEEE--CCEEEEcHHHHHHHHHhhC
Confidence 5799999999999999999999999999988643 3334454 58999999999997 6789999999999999876
No 25
>PRK10387 glutaredoxin 2; Provisional
Probab=99.70 E-value=6.7e-17 Score=137.95 Aligned_cols=92 Identities=29% Similarity=0.519 Sum_probs=75.6
Q ss_pred eEEEecCCCchHHHHHHHHHHcCCceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCccccChHHHHHHHHHHhCCC
Q 024026 70 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYGKG 149 (273)
Q Consensus 70 l~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~~l~ES~aI~~YL~~~~~~~ 149 (273)
|+||+++.||+|+||+++|+++||+|+.++++.+++..+ . +.||.++||+|+.+ +|..|+||.+|++||+++|+..
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~~~~~~--~-~~~p~~~VPvL~~~-~g~~l~eS~aI~~yL~~~~~~~ 76 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLANDDEATP--I-RMIGQKQVPILQKD-DGSYMPESLDIVHYIDELDGKP 76 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCCchhhH--H-HhcCCcccceEEec-CCeEecCHHHHHHHHHHhCCCc
Confidence 689999999999999999999999999999876543322 3 79999999999532 7899999999999999999864
Q ss_pred CCCCCChhHHHHHHhhhhh
Q 024026 150 RSPSTGLLESTLITGWMPT 168 (273)
Q Consensus 150 ~~~~~~~~~~~~~~~wl~~ 168 (273)
... + .+++.+.+|+.+
T Consensus 77 ~l~--~-~~~~~~~~~~~~ 92 (210)
T PRK10387 77 LLT--G-KRSPAIEEWLRK 92 (210)
T ss_pred cCC--C-cccHHHHHHHHH
Confidence 333 1 256778888873
No 26
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=99.70 E-value=4.9e-17 Score=115.69 Aligned_cols=72 Identities=26% Similarity=0.324 Sum_probs=61.9
Q ss_pred eEEEecCCCchHHHHHHHHHHcCCceEEEECCC--CChhhHHHHHHhCCCCcccEEEeCCCCccccChHHHHHHHH
Q 024026 70 LQLFEFEACPFCRRVREAITELDLSVEVFPCPK--GSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLF 143 (273)
Q Consensus 70 l~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~--~~~~~~~~~~~~~p~~~vP~L~d~~~g~~l~ES~aI~~YL~ 143 (273)
|+||+++.||+|+|+|++|+++|++|+.+.++. ++...+++ .++||.++||+|+++ +|..|+||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~-~~~~p~~~vP~l~~~-~~~~l~es~aI~~yLe 74 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEF-LAKNPAGTVPVLELD-DGTVITESVAICRYLE 74 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHH-HhhCCCCCCCEEEeC-CCCEEecHHHHHHHhC
Confidence 589999999999999999999999999988764 22334555 589999999999863 6889999999999985
No 27
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=99.70 E-value=6e-17 Score=120.31 Aligned_cols=70 Identities=21% Similarity=0.327 Sum_probs=61.2
Q ss_pred CCCchHHHHHHHHHHcCCceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCccccChHHHHHHHHHHhCCC
Q 024026 76 EACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYGKG 149 (273)
Q Consensus 76 ~~~p~~~~vr~~L~e~~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~~l~ES~aI~~YL~~~~~~~ 149 (273)
..||||+|||++|+++||+|+.+.++... .++.++++||.|+||+|+| +|.+|+||.+|++||+++|..+
T Consensus 20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~~--~p~~~~~~nP~g~vPvL~~--~~~~i~eS~~I~eYLde~~~~~ 89 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVVFNVTTVDMKR--KPEDLKDLAPGTQPPFLLY--NGEVKTDNNKIEEFLEETLCPP 89 (91)
T ss_pred CCChhHHHHHHHHHHCCCceEEEEeCCCC--CCHHHHHhCCCCCCCEEEE--CCEEecCHHHHHHHHHHHccCC
Confidence 36999999999999999999999997653 2344569999999999997 6899999999999999999753
No 28
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.70 E-value=5.7e-17 Score=115.20 Aligned_cols=71 Identities=27% Similarity=0.374 Sum_probs=62.1
Q ss_pred eEEEecCCCchHHHHHHHHHHcCCceEEEECCC--CChhhHHHHHHhCCCCcccEEEeCCCCccccChHHHHHHHH
Q 024026 70 LQLFEFEACPFCRRVREAITELDLSVEVFPCPK--GSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLF 143 (273)
Q Consensus 70 l~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~--~~~~~~~~~~~~~p~~~vP~L~d~~~g~~l~ES~aI~~YL~ 143 (273)
++||+++.||+|++|+++|+++|++|+.+.++. +++..+++ +++||.++||+|++ +|..|+||.+|++||+
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~-~~~~p~~~vP~l~~--~~~~i~es~aI~~yl~ 73 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEF-LALNPNGEVPVLEL--DGRVLAESNAILVYLA 73 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHH-HHhCCCCCCCEEEE--CCEEEEcHHHHHHHhC
Confidence 589999999999999999999999999998863 33344555 48999999999998 5899999999999984
No 29
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=99.69 E-value=7.5e-17 Score=115.88 Aligned_cols=72 Identities=19% Similarity=0.297 Sum_probs=63.1
Q ss_pred EEEecCCCchHHHHHHHHHHcCCceEEEECCCCC-hhhHHHHHHhCCCCcccEEEeCCCCccccChHHHHHHHHH
Q 024026 71 QLFEFEACPFCRRVREAITELDLSVEVFPCPKGS-IRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQ 144 (273)
Q Consensus 71 ~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~~~-~~~~~~~~~~~p~~~vP~L~d~~~g~~l~ES~aI~~YL~~ 144 (273)
+||+++.||+|++++++|+++|++|+.+.++... ++.+++ +++||.++||+|+++ +|..|+||.||++||++
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~-~~~nP~~~vP~L~~~-~g~~l~es~aI~~yL~~ 74 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKENKTPEF-LKKFPLGKVPAFEGA-DGFCLFESNAIAYYVAN 74 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCceEEEecccccccCCHHH-HHhCCCCCCCEEEcC-CCCEEeeHHHHHHHHhh
Confidence 6999999999999999999999999999887542 344555 589999999999974 68899999999999986
No 30
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=99.69 E-value=1e-16 Score=115.17 Aligned_cols=73 Identities=25% Similarity=0.321 Sum_probs=63.4
Q ss_pred eEEEecCCCchHHHHHHHHHHcCCceEEEECCCC--ChhhHHHHHHhCCCCcccEEEeCCCCccccChHHHHHHHHHH
Q 024026 70 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKG--SIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQ 145 (273)
Q Consensus 70 l~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~~--~~~~~~~~~~~~p~~~vP~L~d~~~g~~l~ES~aI~~YL~~~ 145 (273)
|+||+++.||+|+++|++|+++|++|+.+.++.. +.+.+++ +++||.++||+|++ +|..|+||.||++||+++
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~-~~~~P~~~vP~l~~--~g~~l~es~aI~~yL~~~ 76 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEH-LARNPFGQIPALED--GDLKLFESRAITRYLAEK 76 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHH-HhhCCCCCCCEEEE--CCEEEEcHHHHHHHHhhC
Confidence 7899999999999999999999999999887643 2334554 58999999999997 588999999999999863
No 31
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=99.69 E-value=1.6e-16 Score=118.12 Aligned_cols=76 Identities=22% Similarity=0.331 Sum_probs=65.0
Q ss_pred CCCCceEEEecCCCchHHHHHHHHHHcCCceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCccccChHHHHHHHH
Q 024026 65 DSPTRLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLF 143 (273)
Q Consensus 65 ~~~~~l~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~~l~ES~aI~~YL~ 143 (273)
.-..+++||+++.||+|++|+++|.++|++|+.+.++... ..++ +.++||.++||+|+++ +|..|+||.+|++||+
T Consensus 14 ~~~~~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~-~~~~-~~~~np~~~vPvL~~~-~g~~l~eS~aI~~yLe 89 (89)
T cd03055 14 PVPGIIRLYSMRFCPYAQRARLVLAAKNIPHEVININLKD-KPDW-FLEKNPQGKVPALEID-EGKVVYESLIICEYLD 89 (89)
T ss_pred CCCCcEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCCC-CcHH-HHhhCCCCCcCEEEEC-CCCEEECHHHHHHhhC
Confidence 3456899999999999999999999999999999887543 2234 4589999999999972 5899999999999985
No 32
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=99.68 E-value=1.3e-16 Score=113.91 Aligned_cols=71 Identities=23% Similarity=0.348 Sum_probs=61.7
Q ss_pred eEEEecCCCchHHHHHHHHHHcCCceEEEECCC--CChhhHHHHHHhCCCCcccEEEeCCCCccccChHHHHHHHH
Q 024026 70 LQLFEFEACPFCRRVREAITELDLSVEVFPCPK--GSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLF 143 (273)
Q Consensus 70 l~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~--~~~~~~~~~~~~~p~~~vP~L~d~~~g~~l~ES~aI~~YL~ 143 (273)
++||+++.||+|++|+++|+++|++|+.+.++. ++...+++. ++||.++||+|+| +|..|+||.||++||+
T Consensus 1 ~~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~-~~nP~~~vP~L~~--~~~~l~eS~aI~~YL~ 73 (73)
T cd03047 1 LTIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFL-AMNPNGRVPVLED--GDFVLWESNAILRYLA 73 (73)
T ss_pred CEEEecCCCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHH-hhCCCCCCCEEEE--CCEEEECHHHHHHHhC
Confidence 579999999999999999999999999988753 333445654 8999999999997 6789999999999984
No 33
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=99.67 E-value=7.7e-17 Score=114.75 Aligned_cols=72 Identities=17% Similarity=0.152 Sum_probs=62.6
Q ss_pred eEEEecCCCchHHHHHHHHHHcCCceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCccccChHHHHHHHHH
Q 024026 70 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQ 144 (273)
Q Consensus 70 l~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~~l~ES~aI~~YL~~ 144 (273)
++||+++.|++|++||++|+++|++|+.+.++..+....++ +++||.++||+|+| +|..|+||.||++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~~~~-~~~~p~~~vP~L~~--~~~~l~es~aI~~yL~~ 72 (72)
T cd03039 1 YKLTYFNIRGRGEPIRLLLADAGVEYEDVRITYEEWPELDL-KPTLPFGQLPVLEI--DGKKLTQSNAILRYLAR 72 (72)
T ss_pred CEEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHHHhhhhhh-ccCCcCCCCCEEEE--CCEEEEecHHHHHHhhC
Confidence 58999999999999999999999999999887544333444 48999999999998 58899999999999974
No 34
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=99.67 E-value=1.3e-16 Score=114.19 Aligned_cols=73 Identities=15% Similarity=0.106 Sum_probs=63.2
Q ss_pred ceEEEecCCCchHHHHHHHHHHcCCceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCccccChHHHHHHHHHH
Q 024026 69 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQ 145 (273)
Q Consensus 69 ~l~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~~l~ES~aI~~YL~~~ 145 (273)
+++||+++.|++|++||++|+++|++|+.+.++.+. ..++ ++++||.++||+|+| +|..|+||.||++||+++
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~~~-~~~~-~~~~~p~~~vP~l~~--~~~~l~es~aI~~yL~~~ 73 (73)
T cd03076 1 PYTLTYFPVRGRAEAIRLLLADQGISWEEERVTYEE-WQES-LKPKMLFGQLPCFKD--GDLTLVQSNAILRHLGRK 73 (73)
T ss_pred CcEEEEeCCcchHHHHHHHHHHcCCCCEEEEecHHH-hhhh-hhccCCCCCCCEEEE--CCEEEEcHHHHHHHHhcC
Confidence 478999999999999999999999999999887532 2334 458999999999997 688999999999999863
No 35
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=99.67 E-value=2.3e-16 Score=113.65 Aligned_cols=75 Identities=21% Similarity=0.267 Sum_probs=63.5
Q ss_pred eEEEecCCCchHHHHHHHHHHcCCceEEEECCCC--ChhhHHHHHHhCCCCcccEEEeCCCCccccChHHHHHHHHHHhC
Q 024026 70 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKG--SIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYG 147 (273)
Q Consensus 70 l~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~~--~~~~~~~~~~~~p~~~vP~L~d~~~g~~l~ES~aI~~YL~~~~~ 147 (273)
|+||+++.| +|++||++|+++|++|+.+.++.. +.+.+++. ++||.++||+|+++ +|..|+||.+|++||+++|+
T Consensus 1 ~~Ly~~~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~-~~np~~~vP~l~~~-~g~~l~eS~aI~~yL~~~~p 77 (77)
T cd03057 1 MKLYYSPGA-CSLAPHIALEELGLPFELVRVDLRTKTQKGADYL-AINPKGQVPALVLD-DGEVLTESAAILQYLADLHP 77 (77)
T ss_pred CEEEeCCCC-chHHHHHHHHHcCCCceEEEEecccCccCCHhHH-HhCCCCCCCEEEEC-CCcEEEcHHHHHHHHHHhCc
Confidence 579999866 599999999999999999887642 33455554 89999999999983 58999999999999999884
No 36
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=99.67 E-value=3.5e-16 Score=134.09 Aligned_cols=91 Identities=29% Similarity=0.457 Sum_probs=74.0
Q ss_pred EEEecCCCchHHHHHHHHHHcCCceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCccccChHHHHHHHHHHhCCCC
Q 024026 71 QLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYGKGR 150 (273)
Q Consensus 71 ~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~~l~ES~aI~~YL~~~~~~~~ 150 (273)
+||++..||||+|||++|+++|++|+.+++..++.. ..+ ++||.++||+|++ ++|..|+||.+|++||+++|+.+.
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~~~~--~~~-~~np~g~vP~l~~-~~g~~l~es~~I~~yL~~~~~~~~ 76 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNIPVEKHVLLNDDEE--TPI-RMIGAKQVPILQK-DDGRAMPESLDIVAYFDKLDGEPL 76 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCCCeEEEECCCCcch--hHH-HhcCCCCcceEEe-eCCeEeccHHHHHHHHHHhCCCcc
Confidence 589999999999999999999999999988765432 224 8999999999984 278999999999999999997643
Q ss_pred CCCCChhHHHHHHhhhhh
Q 024026 151 SPSTGLLESTLITGWMPT 168 (273)
Q Consensus 151 ~~~~~~~~~~~~~~wl~~ 168 (273)
.++ ..+.++.+|+..
T Consensus 77 ~~~---~~~~~~~~~~~~ 91 (209)
T TIGR02182 77 LTG---KVSPEIEAWLRK 91 (209)
T ss_pred CCC---CChHHHHHHHHH
Confidence 322 245677888863
No 37
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=99.66 E-value=3.7e-16 Score=112.32 Aligned_cols=68 Identities=24% Similarity=0.400 Sum_probs=61.2
Q ss_pred ceEEEecC-------CCchHHHHHHHHHHcCCceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCccccChHHHHHH
Q 024026 69 RLQLFEFE-------ACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNY 141 (273)
Q Consensus 69 ~l~Ly~~~-------~~p~~~~vr~~L~e~~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~~l~ES~aI~~Y 141 (273)
|++||.++ .||+|+||+++|+++|++|+.+.++. +++||.++||+|++ +|..|+||.+|++|
T Consensus 1 m~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~---------~~~~p~g~vPvl~~--~g~~l~eS~~I~~y 69 (75)
T cd03080 1 MITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGL---------AKRSPKGKLPFIEL--NGEKIADSELIIDH 69 (75)
T ss_pred CEEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCc---------ccCCCCCCCCEEEE--CCEEEcCHHHHHHH
Confidence 57899998 57999999999999999999987753 26899999999997 68999999999999
Q ss_pred HHHHhC
Q 024026 142 LFQQYG 147 (273)
Q Consensus 142 L~~~~~ 147 (273)
|+++|+
T Consensus 70 L~~~~~ 75 (75)
T cd03080 70 LEEKYG 75 (75)
T ss_pred HHHHcC
Confidence 999986
No 38
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=99.65 E-value=1.5e-16 Score=112.99 Aligned_cols=67 Identities=37% Similarity=0.569 Sum_probs=54.5
Q ss_pred CCchHHHHHHHHHHcCCceEEEECC---CCChhhHHHHHHhCCCCcccEEEeCCCCccccChHHHHHHHHHH
Q 024026 77 ACPFCRRVREAITELDLSVEVFPCP---KGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQ 145 (273)
Q Consensus 77 ~~p~~~~vr~~L~e~~l~~~~~~v~---~~~~~~~~~~~~~~p~~~vP~L~d~~~g~~l~ES~aI~~YL~~~ 145 (273)
.||||+||+++|+++||+|+...+. .+..+.+++ .++||.++||+|+|+ +|.+++||.+|++||+++
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~-~~~~p~~~VP~L~~~-~g~vi~eS~~I~~yL~~~ 70 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEF-LALNPRGKVPVLVDP-DGTVINESLAILEYLEEQ 70 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBH-HHHSTT-SSSEEEET-TTEEEESHHHHHHHHHHT
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhh-hccCcCeEEEEEEEC-CCCEeeCHHHHHHHHhcC
Confidence 4999999999999999999987762 222223444 599999999999996 889999999999999974
No 39
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.65 E-value=5.1e-16 Score=110.71 Aligned_cols=71 Identities=24% Similarity=0.356 Sum_probs=61.6
Q ss_pred eEEEecCCCchHHHHHHHHHH--cCCceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCccccChHHHHHHHH
Q 024026 70 LQLFEFEACPFCRRVREAITE--LDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLF 143 (273)
Q Consensus 70 l~Ly~~~~~p~~~~vr~~L~e--~~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~~l~ES~aI~~YL~ 143 (273)
++||+++.||+|+|+|++|++ +|++|+.+.++.. .+.++++ ++||.++||+|+++ +|..|+||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~-~~~~~~~-~~~p~~~vP~l~~~-~g~~l~es~aI~~yLe 73 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPW-SDDESLL-AVNPLGKIPALVLD-DGEALFDSRVICEYLD 73 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcc-cCChHHH-HhCCCCCCCEEEEC-CCCEEECHHHHHhhhC
Confidence 589999999999999999999 8999999988743 2345554 89999999999863 7899999999999984
No 40
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=99.63 E-value=1e-15 Score=109.69 Aligned_cols=74 Identities=24% Similarity=0.408 Sum_probs=63.6
Q ss_pred eEEEecCCCchHHHHHHHHHHcCCceEEEECCCC--ChhhHHHHHHhCCCCcccEEEeCCCCccccChHHHHHHHHHHhC
Q 024026 70 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKG--SIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYG 147 (273)
Q Consensus 70 l~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~~--~~~~~~~~~~~~p~~~vP~L~d~~~g~~l~ES~aI~~YL~~~~~ 147 (273)
|+||+++. ++|++|+++|+++|++|+.+.++.. ..+.+++. ++||.++||+|++ +|..|+||.+|++||+++|+
T Consensus 1 ~~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~-~~~p~~~vP~l~~--~g~~l~es~aI~~yL~~~~~ 76 (76)
T cd03046 1 ITLYHLPR-SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYL-AINPLGKVPVLVD--GDLVLTESAAIILYLAEKYG 76 (76)
T ss_pred CEEEeCCC-CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHH-hcCCCCCCCEEEE--CCEEEEcHHHHHHHHHHhCc
Confidence 57999885 7899999999999999999988653 33445554 8999999999997 68899999999999999885
No 41
>PLN02378 glutathione S-transferase DHAR1
Probab=99.62 E-value=1.9e-15 Score=129.91 Aligned_cols=129 Identities=15% Similarity=0.151 Sum_probs=88.2
Q ss_pred cCCCchHHHHHHHHHHcCCceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCccccChHHHHHHHHHHhCCCCCCCC
Q 024026 75 FEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYGKGRSPST 154 (273)
Q Consensus 75 ~~~~p~~~~vr~~L~e~~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~~l~ES~aI~~YL~~~~~~~~~~~~ 154 (273)
+..||||+||+++|+++|++|+.+.++... +.++++ ++||.|+||+|++ +|.+|+||.+|++||+++|+.... .
T Consensus 17 ~~~~p~~~rv~~~L~e~gl~~e~~~v~~~~-~~~~~l-~inP~G~VPvL~~--~~~~l~ES~aI~~YL~~~~~~~~l--~ 90 (213)
T PLN02378 17 LGDCPFSQRALLTLEEKSLTYKIHLINLSD-KPQWFL-DISPQGKVPVLKI--DDKWVTDSDVIVGILEEKYPDPPL--K 90 (213)
T ss_pred CCCCcchHHHHHHHHHcCCCCeEEEeCccc-CCHHHH-HhCCCCCCCEEEE--CCEEecCHHHHHHHHHHhCCCCCC--C
Confidence 446999999999999999999999887643 344555 8999999999997 678999999999999999975432 2
Q ss_pred ChhHHHHHHhhhhhHHhhcccchhhcccCCCCCchhhhhhhccCCchHHHHHHHHHhcCCceEEEE
Q 024026 155 GLLESTLITGWMPTIFRAGRGMTLWEKARPDPPSKKLELFSYENNPYARIVREALCELELPYILQN 220 (273)
Q Consensus 155 ~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~i~ly~~~~s~~~~~v~~~L~e~gi~y~~~~ 220 (273)
++.+++.+.++++... ..+..... ...... ......+..++..|...+.+|++++
T Consensus 91 ~~~~~a~i~~~~~~~~------~~~~~~~~-~~~~~~----~~~~~~l~~le~~L~~~~~~fl~Gd 145 (213)
T PLN02378 91 TPAEFASVGSNIFGTF------GTFLKSKD-SNDGSE----HALLVELEALENHLKSHDGPFIAGE 145 (213)
T ss_pred CHHHHHHHHHHHHHHH------HHHHhcCC-hhhHHH----HHHHHHHHHHHHHHhcCCCCCcCCC
Confidence 4566777766654211 11111111 111111 1223457788888875444787653
No 42
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=99.61 E-value=1.4e-15 Score=108.02 Aligned_cols=71 Identities=25% Similarity=0.320 Sum_probs=61.4
Q ss_pred eEEEecCCCchHHHHHHHHHHcCCceEEEECCC--CChhhHHHHHHhCCCCcccEEEeCCCCccccChHHHHHHHH
Q 024026 70 LQLFEFEACPFCRRVREAITELDLSVEVFPCPK--GSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLF 143 (273)
Q Consensus 70 l~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~--~~~~~~~~~~~~~p~~~vP~L~d~~~g~~l~ES~aI~~YL~ 143 (273)
|+||++..|++|+++|++|+++|++|+.+.++. +....+++ +++||.++||+|+| +|..|+||.||++||+
T Consensus 1 ~~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~-~~~~p~~~vP~l~~--~~~~l~es~aI~~yL~ 73 (73)
T cd03042 1 MILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAY-RALNPQGLVPTLVI--DGLVLTQSLAIIEYLD 73 (73)
T ss_pred CEEecCCCCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHH-HHhCCCCCCCEEEE--CCEEEEcHHHHHHHhC
Confidence 589999999999999999999999999988764 23344555 48999999999998 5889999999999984
No 43
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.61 E-value=1.8e-15 Score=109.28 Aligned_cols=77 Identities=43% Similarity=0.785 Sum_probs=69.7
Q ss_pred hhhhhhccCCchHHHHHHHHHhcCCceEEEEcCCCCCCchhHHhhcCCCcccEEEcCCCCeeeccHHHHHHHHHhhc
Q 024026 190 KLELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSY 266 (273)
Q Consensus 190 ~i~ly~~~~s~~~~~v~~~L~e~gi~y~~~~v~~~~~~~~~~~~~~~~~~VP~l~d~~~~~~l~eS~~I~~yL~~~y 266 (273)
++++|....|++|+++++.|.++|++|..+++..+.++.+++.++||.++||+|++++++..++||.+|++||+++|
T Consensus 1 ~~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~l~es~~I~~yL~~~~ 77 (77)
T cd03041 1 PLELYEFEGSPFCRLVREVLTELELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQMFESADIVKYLFKTY 77 (77)
T ss_pred CceEecCCCCchHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCeEEEcHHHHHHHHHHhC
Confidence 36789999999999999999999999999999876666788999999999999998666789999999999999986
No 44
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=99.60 E-value=1.6e-15 Score=111.31 Aligned_cols=70 Identities=21% Similarity=0.254 Sum_probs=57.9
Q ss_pred CCCchHHHHHHHHHHcCCceEEEECCCCC-hhhHHHHHHhCCCCcccEEEeCCCCccccChHHHHHHHHHHhC
Q 024026 76 EACPFCRRVREAITELDLSVEVFPCPKGS-IRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYG 147 (273)
Q Consensus 76 ~~~p~~~~vr~~L~e~~l~~~~~~v~~~~-~~~~~~~~~~~p~~~vP~L~d~~~g~~l~ES~aI~~YL~~~~~ 147 (273)
..||||+|||++|.++|++|+.+.++... ....+++ ++||.++||+|+|+ +|..|+||.+|++||+++|+
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~~p~~~vP~L~~~-~~~~l~eS~aI~~yL~~~~p 84 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TSGGFYTVPVIVDG-SGEVIGDSFAIAEYLEEAYP 84 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccc-cCCCCceeCeEEEC-CCCEEeCHHHHHHHHHHhCc
Confidence 57999999999999999999998876432 1122344 78999999999982 48899999999999999884
No 45
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=99.60 E-value=7.4e-15 Score=127.96 Aligned_cols=71 Identities=15% Similarity=0.221 Sum_probs=62.3
Q ss_pred cCCCchHHHHHHHHHHcCCceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCccccChHHHHHHHHHHhCCC
Q 024026 75 FEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYGKG 149 (273)
Q Consensus 75 ~~~~p~~~~vr~~L~e~~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~~l~ES~aI~~YL~~~~~~~ 149 (273)
...||||++|+++|.++||+|+++.++... +.++| +++||.++||+|+| +|.+|+||.+|++||+++|+++
T Consensus 16 ~~~cp~~~rv~i~L~ekgi~~e~~~vd~~~-~~~~f-l~inP~g~vPvL~~--~g~~l~ES~aI~eYL~e~~~~~ 86 (236)
T TIGR00862 16 IGNCPFSQRLFMILWLKGVVFNVTTVDLKR-KPEDL-QNLAPGTHPPFLTY--NTEVKTDVNKIEEFLEETLCPP 86 (236)
T ss_pred CCCCHhHHHHHHHHHHcCCCcEEEEECCCC-CCHHH-HHHCcCCCCCEEEE--CCEEeecHHHHHHHHHHHcCCC
Confidence 457999999999999999999999997653 34555 49999999999997 6899999999999999999753
No 46
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=99.59 E-value=4.7e-15 Score=107.73 Aligned_cols=71 Identities=17% Similarity=0.230 Sum_probs=60.9
Q ss_pred eEEEecCCCchHHHHHHHHHHcCCceEEEECCCCChhhHHHHHHhC-----CCCcccEEEeCCCCccccChHHHHHHHHH
Q 024026 70 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLG-----GKEQFPFLIDPNTGVSMYESGDIVNYLFQ 144 (273)
Q Consensus 70 l~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~~~~~~~~~~~~~~-----p~~~vP~L~d~~~g~~l~ES~aI~~YL~~ 144 (273)
++||+++.++.|++|+++|+++|++|+.+.++.+ +++. +.+ |.++||+|+| +|..|+||.||++||++
T Consensus 2 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~----~~~~-~~~~~~~~~~g~vP~L~~--~g~~l~ES~AI~~YL~~ 74 (79)
T cd03077 2 PVLHYFNGRGRMESIRWLLAAAGVEFEEKFIESA----EDLE-KLKKDGSLMFQQVPMVEI--DGMKLVQTRAILNYIAG 74 (79)
T ss_pred CEEEEeCCCChHHHHHHHHHHcCCCcEEEEeccH----HHHH-hhccccCCCCCCCCEEEE--CCEEEeeHHHHHHHHHH
Confidence 4799999999999999999999999999988753 2222 333 5899999997 68999999999999999
Q ss_pred HhC
Q 024026 145 QYG 147 (273)
Q Consensus 145 ~~~ 147 (273)
+|+
T Consensus 75 ~~~ 77 (79)
T cd03077 75 KYN 77 (79)
T ss_pred HcC
Confidence 987
No 47
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=99.58 E-value=4.8e-15 Score=108.47 Aligned_cols=74 Identities=15% Similarity=0.159 Sum_probs=60.5
Q ss_pred EEEecCCCchHHHHHHHHHHcCCceEEEECCCC--Chh-hHHHHHHhC----CCCcccEEEeCCCCccccChHHHHHHHH
Q 024026 71 QLFEFEACPFCRRVREAITELDLSVEVFPCPKG--SIR-HREMVRRLG----GKEQFPFLIDPNTGVSMYESGDIVNYLF 143 (273)
Q Consensus 71 ~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~~--~~~-~~~~~~~~~----p~~~vP~L~d~~~g~~l~ES~aI~~YL~ 143 (273)
+||++..++.|+++|++|+++|++|+.+.++.. +.. .+++....| |.++||+|+| +|..|+||.||++||+
T Consensus 2 ~l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~--~g~~l~ES~AIl~YLa 79 (82)
T cd03075 2 TLGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYID--GDVKLTQSNAILRYIA 79 (82)
T ss_pred EEEEeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEE--CCEEEeehHHHHHHHh
Confidence 689999899999999999999999999988643 221 234442222 9999999997 6899999999999999
Q ss_pred HHh
Q 024026 144 QQY 146 (273)
Q Consensus 144 ~~~ 146 (273)
++|
T Consensus 80 ~~~ 82 (82)
T cd03075 80 RKH 82 (82)
T ss_pred hcC
Confidence 875
No 48
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=99.57 E-value=7.1e-15 Score=102.15 Aligned_cols=71 Identities=32% Similarity=0.428 Sum_probs=61.6
Q ss_pred eEEEecCCCchHHHHHHHHHHcCCceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCccccChHHHHHHHH
Q 024026 70 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLF 143 (273)
Q Consensus 70 l~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~~l~ES~aI~~YL~ 143 (273)
++||+++.||+|++++++|+++|++|+.+.++....... .+++.+|.+++|+|++ +|..++||.+|++||+
T Consensus 1 ~~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~P~l~~--~~~~~~es~~I~~yl~ 71 (71)
T cd00570 1 LKLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGEQE-EFLALNPLGKVPVLED--GGLVLTESLAILEYLA 71 (71)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCCCH-HHHhcCCCCCCCEEEE--CCEEEEcHHHHHHHhC
Confidence 579999999999999999999999999998876543223 3558999999999998 5899999999999984
No 49
>PTZ00057 glutathione s-transferase; Provisional
Probab=99.57 E-value=1.6e-14 Score=123.33 Aligned_cols=140 Identities=14% Similarity=0.101 Sum_probs=92.6
Q ss_pred ceEEEecCCCchHHHHHHHHHHcCCceEEEECCCCChhhHHHH-----H--HhCCCCcccEEEeCCCCccccChHHHHHH
Q 024026 69 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMV-----R--RLGGKEQFPFLIDPNTGVSMYESGDIVNY 141 (273)
Q Consensus 69 ~l~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~~~~~~~~~~-----~--~~~p~~~vP~L~d~~~g~~l~ES~aI~~Y 141 (273)
+++||+++.+++|++||++|+++|++|+.+.++. .. .+++ + +.||.++||+|+| +|.+|+||.||++|
T Consensus 4 ~~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~--~~-~~~~~~~~~~~~~~nP~g~vP~L~~--~~~~l~eS~AI~~Y 78 (205)
T PTZ00057 4 EIVLYYFDARGKAELIRLIFAYLGIEYTDKRFGE--NG-DAFIEFKNFKKEKDTPFEQVPILEM--DNIIFAQSQAIVRY 78 (205)
T ss_pred ceEEEecCCCcchHHHHHHHHHcCCCeEEEeccc--cc-hHHHHHHhccccCCCCCCCCCEEEE--CCEEEecHHHHHHH
Confidence 4899999999999999999999999999987742 11 2332 1 4799999999998 68999999999999
Q ss_pred HHHHhCCCCCCCCChhHHHHHHhhhhhHHhhcccchhhcccCCCCCchhhhhhhccCCchHHHHHHHHHhcCCceEEEE
Q 024026 142 LFQQYGKGRSPSTGLLESTLITGWMPTIFRAGRGMTLWEKARPDPPSKKLELFSYENNPYARIVREALCELELPYILQN 220 (273)
Q Consensus 142 L~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~i~ly~~~~s~~~~~v~~~L~e~gi~y~~~~ 220 (273)
|+++|+.. + ..++.++..|+. +............... ......+.....+...+..++..|.+.|.+|++++
T Consensus 79 La~~~~~~---~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~Gd 150 (205)
T PTZ00057 79 LSKKYKIC---G--ESELNEFYADMI-FCGVQDIHYKFNNTNL-FKQNETTFLNEELPKWSGYFENILKKNHCNYFVGD 150 (205)
T ss_pred HHHHcCCC---C--CCHHHHHHHHHH-HHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeCC
Confidence 99999732 1 123455555654 2211000000000000 00112233345567788889999987655798653
No 50
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=99.56 E-value=1.3e-14 Score=128.80 Aligned_cols=85 Identities=16% Similarity=0.201 Sum_probs=71.3
Q ss_pred CCchHHHHHHHHHHcCCceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCccccChHHHHHHHHHHhCCCCCCCCCh
Q 024026 77 ACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYGKGRSPSTGL 156 (273)
Q Consensus 77 ~~p~~~~vr~~L~e~~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~~l~ES~aI~~YL~~~~~~~~~~~~~~ 156 (273)
.||||+||+++|+|+||+|+.+.++... +.+++ +++||.|+||+|++ +|..|+||.+|++||+++|+..... ++
T Consensus 72 ~cp~s~rV~i~L~ekgi~ye~~~vdl~~-~~~~f-l~iNP~GkVPvL~~--d~~~L~ES~aI~~YL~e~~p~~~L~--~~ 145 (265)
T PLN02817 72 DCPFCQRVLLTLEEKHLPYDMKLVDLTN-KPEWF-LKISPEGKVPVVKL--DEKWVADSDVITQALEEKYPDPPLA--TP 145 (265)
T ss_pred CCcHHHHHHHHHHHcCCCCEEEEeCcCc-CCHHH-HhhCCCCCCCEEEE--CCEEEecHHHHHHHHHHHCCCCCCC--CH
Confidence 4999999999999999999999887643 34455 58999999999997 5679999999999999999864332 45
Q ss_pred hHHHHHHhhhh
Q 024026 157 LESTLITGWMP 167 (273)
Q Consensus 157 ~~~~~~~~wl~ 167 (273)
.+++.+.+|+.
T Consensus 146 ~era~i~~~l~ 156 (265)
T PLN02817 146 PEKASVGSKIF 156 (265)
T ss_pred HHHHHHHHHHH
Confidence 67888888875
No 51
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=99.55 E-value=2.4e-14 Score=103.20 Aligned_cols=71 Identities=25% Similarity=0.361 Sum_probs=57.5
Q ss_pred eEEEecCCCchHHHHHHHHHHcCCceEEEECC--CCChhhHHHHHHhCCC-CcccEEEeCCCCccccChHHHHHHHHH
Q 024026 70 LQLFEFEACPFCRRVREAITELDLSVEVFPCP--KGSIRHREMVRRLGGK-EQFPFLIDPNTGVSMYESGDIVNYLFQ 144 (273)
Q Consensus 70 l~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~--~~~~~~~~~~~~~~p~-~~vP~L~d~~~g~~l~ES~aI~~YL~~ 144 (273)
++||..++ +|.++|++|+++|++|+.+.++ .++++.+++. +.||. ++||+|+|+ +|..++||.||++||++
T Consensus 3 l~l~~~~~--~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~-~~~p~~g~vP~l~~~-~~~~l~es~AI~~YLa~ 76 (76)
T PF02798_consen 3 LTLYNGRG--RSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFL-AINPMFGKVPALEDG-DGFVLTESNAILRYLAR 76 (76)
T ss_dssp EEEESSST--TTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHH-HHTTTSSSSSEEEET-TTEEEESHHHHHHHHHH
T ss_pred EEEECCCC--chHHHHHHHHHhcccCceEEEecccccccchhhh-hcccccceeeEEEEC-CCCEEEcHHHHHHHhCC
Confidence 45665554 8999999999999999998775 4555556664 99999 999999994 59999999999999985
No 52
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.53 E-value=1.8e-14 Score=103.01 Aligned_cols=66 Identities=17% Similarity=0.260 Sum_probs=56.2
Q ss_pred cCCCchHHHHHHHHHHcCCceEEEECCCCCh-hhHHHHHHhCCCCcccEEEeCCCCccccChHHHHHHHH
Q 024026 75 FEACPFCRRVREAITELDLSVEVFPCPKGSI-RHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLF 143 (273)
Q Consensus 75 ~~~~p~~~~vr~~L~e~~l~~~~~~v~~~~~-~~~~~~~~~~p~~~vP~L~d~~~g~~l~ES~aI~~YL~ 143 (273)
...||+|++|+++|+++|++|+.+.++.... ..++ ++++||.++||+|++ +|..|+||.+|++||+
T Consensus 7 ~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~~~~-~~~~nP~g~vP~L~~--~g~~l~eS~aI~~YL~ 73 (73)
T cd03043 7 KNYSSWSLRPWLLLKAAGIPFEEILVPLYTPDTRAR-ILEFSPTGKVPVLVD--GGIVVWDSLAICEYLA 73 (73)
T ss_pred CCCCHHHHHHHHHHHHcCCCCEEEEeCCCCccccHH-HHhhCCCCcCCEEEE--CCEEEEcHHHHHHHhC
Confidence 4579999999999999999999998875432 3344 458999999999997 6889999999999984
No 53
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=99.52 E-value=4.1e-14 Score=100.61 Aligned_cols=64 Identities=22% Similarity=0.394 Sum_probs=56.2
Q ss_pred EEEecC-------CCchHHHHHHHHHHcCCceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCccccChHHHHHHHH
Q 024026 71 QLFEFE-------ACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLF 143 (273)
Q Consensus 71 ~Ly~~~-------~~p~~~~vr~~L~e~~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~~l~ES~aI~~YL~ 143 (273)
+||.++ .||+|++|+++|+++||+|+.++++.. .+||.++||+|++ +|..++||.+|++||+
T Consensus 2 ~L~~~~~~~~~~s~sp~~~~v~~~L~~~~i~~~~~~~~~~---------~~~p~g~vP~l~~--~g~~l~es~~I~~yL~ 70 (72)
T cd03054 2 ELYQWGRAFGLPSLSPECLKVETYLRMAGIPYEVVFSSNP---------WRSPTGKLPFLEL--NGEKIADSEKIIEYLK 70 (72)
T ss_pred EEEEeCCCCCCCCCCHHHHHHHHHHHhCCCceEEEecCCc---------ccCCCcccCEEEE--CCEEEcCHHHHHHHHh
Confidence 566665 799999999999999999999988642 2789999999997 6889999999999998
Q ss_pred HH
Q 024026 144 QQ 145 (273)
Q Consensus 144 ~~ 145 (273)
++
T Consensus 71 ~~ 72 (72)
T cd03054 71 KK 72 (72)
T ss_pred hC
Confidence 74
No 54
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=99.43 E-value=4.8e-13 Score=97.26 Aligned_cols=77 Identities=27% Similarity=0.447 Sum_probs=67.0
Q ss_pred hhhhhccCCchHHHHHHHHHhcCCceEEEEcC--CCCCCchhHHhhcCCCcccEEEcCC-CCeeeccHHHHHHHHHhhcC
Q 024026 191 LELFSYENNPYARIVREALCELELPYILQNVG--DGSSRTKLLVDITGSKEVPYLIDPN-TSTQIGDYKKILSYLFQSYS 267 (273)
Q Consensus 191 i~ly~~~~s~~~~~v~~~L~e~gi~y~~~~v~--~~~~~~~~~~~~~~~~~VP~l~d~~-~~~~l~eS~~I~~yL~~~y~ 267 (273)
+++|.... +++++++..|.++|++|..+.+. .+..+.++|.++||.++||+|++++ ++..|+||.+|++||+++|+
T Consensus 2 ~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~g~~l~eS~aI~~yL~~~~~ 80 (81)
T cd03048 2 ITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPNGRIPAIVDHNGTPLTVFESGAILLYLAEKYD 80 (81)
T ss_pred eEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcCCCCCEEEeCCCCceEEEcHHHHHHHHHHHhC
Confidence 56788775 99999999999999999998886 4456778999999999999999853 26889999999999999997
Q ss_pred C
Q 024026 268 A 268 (273)
Q Consensus 268 ~ 268 (273)
+
T Consensus 81 ~ 81 (81)
T cd03048 81 K 81 (81)
T ss_pred C
Confidence 4
No 55
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.41 E-value=1.3e-12 Score=94.82 Aligned_cols=75 Identities=23% Similarity=0.457 Sum_probs=64.7
Q ss_pred CCCCceEEEecCCCchHHHHHHHHHHcCCceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCccccChHHHHHHHH
Q 024026 65 DSPTRLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLF 143 (273)
Q Consensus 65 ~~~~~l~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~~l~ES~aI~~YL~ 143 (273)
..+++++||+.++||+|++++.+|+++|++|+.++++.... ..+ +++.++..+||++.. +|..|.++.+|.+||+
T Consensus 5 ~~~~~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~~~-~~~-~~~~~g~~~vP~i~i--~g~~igG~~~l~~~l~ 79 (79)
T TIGR02190 5 RKPESVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGNDAR-GRS-LRAVTGATTVPQVFI--GGKLIGGSDELEAYLA 79 (79)
T ss_pred CCCCCEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCChH-HHH-HHHHHCCCCcCeEEE--CCEEEcCHHHHHHHhC
Confidence 34568999999999999999999999999999999976532 333 457888999999996 7899999999999984
No 56
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=99.37 E-value=1.8e-12 Score=93.01 Aligned_cols=74 Identities=28% Similarity=0.516 Sum_probs=66.1
Q ss_pred hhhccCCchHHHHHHHHHhcCCceEEEEcCCCCCCchhHHhhcCCCcccEEEcCCCCeeeccHHHHHHHHHhhcCCC
Q 024026 193 LFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSYSAS 269 (273)
Q Consensus 193 ly~~~~s~~~~~v~~~L~e~gi~y~~~~v~~~~~~~~~~~~~~~~~~VP~l~d~~~~~~l~eS~~I~~yL~~~y~~~ 269 (273)
+|+...|+++++++..|.++|++|..+.+..+ .+++++.+++|.++||+|+++ |..++||.+|++||+++|++.
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~-~~~~~~~~~~p~~~vPvL~~~--g~~l~dS~~I~~yL~~~~~~~ 74 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPE-EKRPEFLKLNPKGKVPVLVDD--GEVLTDSAAIIEYLEERYPGP 74 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTT-STSHHHHHHSTTSBSSEEEET--TEEEESHHHHHHHHHHHSTSS
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCcc-cchhHHHhhcccccceEEEEC--CEEEeCHHHHHHHHHHHcCCC
Confidence 46788999999999999999999999998754 347889999999999999974 679999999999999999864
No 57
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=1e-12 Score=106.90 Aligned_cols=92 Identities=28% Similarity=0.470 Sum_probs=74.4
Q ss_pred eEEEecCCCchHHHHHHHHHHcCCceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCccccChHHHHHHHHHHhCCC
Q 024026 70 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYGKG 149 (273)
Q Consensus 70 l~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~~l~ES~aI~~YL~~~~~~~ 149 (273)
|+||-|++||||.|+|++.-.+|||++.+....++..++- .+-+..+||+|+- ++|..|.||.+|+.|+++.++..
T Consensus 1 MkLYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe~Tp~---rmiG~KqVPiL~K-edg~~m~ESlDIV~y~d~~~~~~ 76 (215)
T COG2999 1 MKLYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDEETPI---RMIGQKQVPILQK-EDGRAMPESLDIVHYVDELDGKP 76 (215)
T ss_pred CceeEeccChHHHHHHHHhhccCCChhhheeccCcccChh---hhhcccccceEEc-cccccchhhhHHHHHHHHhcCch
Confidence 6899999999999999999999999999887766655663 4567899999997 58999999999999999999865
Q ss_pred CCCCCChhHHHHHHhhhhh
Q 024026 150 RSPSTGLLESTLITGWMPT 168 (273)
Q Consensus 150 ~~~~~~~~~~~~~~~wl~~ 168 (273)
..-. ..+-.+..|+..
T Consensus 77 ~lt~---~~~pai~~wlrk 92 (215)
T COG2999 77 LLTG---KVRPAIEAWLRK 92 (215)
T ss_pred hhcc---CcCHHHHHHHHH
Confidence 3221 123456778763
No 58
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=99.35 E-value=2.4e-12 Score=91.63 Aligned_cols=72 Identities=24% Similarity=0.354 Sum_probs=63.6
Q ss_pred hhhhhccCCchHHHHHHHHHhcCCceEEEEcC--CCCCCchhHHhhcCCCcccEEEcCCCCeeeccHHHHHHHHHh
Q 024026 191 LELFSYENNPYARIVREALCELELPYILQNVG--DGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQ 264 (273)
Q Consensus 191 i~ly~~~~s~~~~~v~~~L~e~gi~y~~~~v~--~~~~~~~~~~~~~~~~~VP~l~d~~~~~~l~eS~~I~~yL~~ 264 (273)
+++|....++++++++..|+++|++|..+.++ .+.++.+++.++||.++||+|+++ +..|+||.+|++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~--~~~l~es~aI~~yL~~ 74 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVDN--GFVLWESHAILIYLVE 74 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEEEC--CEEEEcHHHHHHHHhC
Confidence 35788889999999999999999999999886 455677899999999999999984 6889999999999974
No 59
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.35 E-value=2.6e-12 Score=91.81 Aligned_cols=70 Identities=23% Similarity=0.283 Sum_probs=61.4
Q ss_pred hhhhccCCchHHHHHHHHHhcCCceEEEEcCC--CCCCchhHHhhcCCCcccEEEcCCCCeeeccHHHHHHHHH
Q 024026 192 ELFSYENNPYARIVREALCELELPYILQNVGD--GSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLF 263 (273)
Q Consensus 192 ~ly~~~~s~~~~~v~~~L~e~gi~y~~~~v~~--~~~~~~~~~~~~~~~~VP~l~d~~~~~~l~eS~~I~~yL~ 263 (273)
++|....++++++++..|.++|++|.++.++. +.++.++|.++||.++||+|++ ++..++||.+|++||+
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~~--~g~~l~Es~aI~~yLe 73 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLIH--GDNIICDPTQIIDYLE 73 (73)
T ss_pred EEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEEE--CCEEEEcHHHHHHHhC
Confidence 56788889999999999999999999998753 4466788999999999999998 4678999999999985
No 60
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.35 E-value=3.6e-12 Score=90.43 Aligned_cols=72 Identities=22% Similarity=0.339 Sum_probs=64.0
Q ss_pred hhhhccCCchHHHHHHHHHhcCCceEEEEcCCCCCCchhHHhhcCCCcccEEEcCCCCeeeccHHHHHHHHHhhc
Q 024026 192 ELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSY 266 (273)
Q Consensus 192 ~ly~~~~s~~~~~v~~~L~e~gi~y~~~~v~~~~~~~~~~~~~~~~~~VP~l~d~~~~~~l~eS~~I~~yL~~~y 266 (273)
++|+...+++|++++..|.++|++|..++++.. ++.+++.++||.++||+|+++ +..++||.+|++||+++|
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p~~~vP~l~~~--~~~l~es~aI~~yL~~~~ 73 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPD-NPPEDLAELNPYGTVPTLVDR--DLVLYESRIIMEYLDERF 73 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCCccEEEEcCCC-CCCHHHHhhCCCCCCCEEEEC--CEEEEcHHHHHHHHHhhC
Confidence 578888999999999999999999999988754 566889999999999999874 578999999999999876
No 61
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.32 E-value=9.5e-12 Score=88.43 Aligned_cols=71 Identities=28% Similarity=0.478 Sum_probs=62.0
Q ss_pred ceEEEecCCCchHHHHHHHHHHcCCceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCccccChHHHHHHHH
Q 024026 69 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLF 143 (273)
Q Consensus 69 ~l~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~~l~ES~aI~~YL~ 143 (273)
+++||+.++||+|.+++.+|+++|++|+.++++.+. . ...+++.++..+||+|+. +|..+.++.+|.+||+
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~-~-~~~~~~~~g~~~vP~ifi--~g~~igg~~~l~~~l~ 72 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEEIPLGKDI-T-GRSLRAVTGAMTVPQVFI--DGELIGGSDDLEKYFA 72 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCCh-h-HHHHHHHhCCCCcCeEEE--CCEEEeCHHHHHHHhC
Confidence 689999999999999999999999999999998654 2 234557788999999986 7899999999999984
No 62
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=99.29 E-value=1.1e-11 Score=88.83 Aligned_cols=73 Identities=21% Similarity=0.227 Sum_probs=63.5
Q ss_pred hhhhccCCchHHHHHHHHHhcCCceEEEEcCC--CCCCchhHHhhcCCCcccEEEcCCCCeeeccHHHHHHHHHhhc
Q 024026 192 ELFSYENNPYARIVREALCELELPYILQNVGD--GSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSY 266 (273)
Q Consensus 192 ~ly~~~~s~~~~~v~~~L~e~gi~y~~~~v~~--~~~~~~~~~~~~~~~~VP~l~d~~~~~~l~eS~~I~~yL~~~y 266 (273)
++|....++.++++...|.++|++|..+.++. +....+++.++||.++||+|+++ +..++||.+|++||+++|
T Consensus 2 ~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~--~~~l~eS~aI~~Yl~~~~ 76 (76)
T cd03050 2 KLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPFGKVPAIVDG--DFTLAESVAILRYLARKF 76 (76)
T ss_pred EEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcCCCCCEEEEC--CEEEEcHHHHHHHHHhhC
Confidence 57888899999999999999999999988753 34456789999999999999973 578999999999999876
No 63
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=99.28 E-value=7.7e-12 Score=89.37 Aligned_cols=65 Identities=18% Similarity=0.219 Sum_probs=52.5
Q ss_pred ceEEEecCCCchHHHHHHHHHHcCCceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCccccChHHHHHHHHHH
Q 024026 69 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQ 145 (273)
Q Consensus 69 ~l~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~~l~ES~aI~~YL~~~ 145 (273)
...|+. .+++|.|++++|+++|+||+.+....+ + ..+|.|+||+|++ +|.+|+||.+|+.||+++
T Consensus 10 ~~~~~~--~~~~~~kv~~~L~elglpye~~~~~~~-----~---~~~P~GkVP~L~~--dg~vI~eS~aIl~yL~~~ 74 (74)
T cd03079 10 EQILLP--DNASCLAVQTFLKMCNLPFNVRCRANA-----E---FMSPSGKVPFIRV--GNQIVSEFGPIVQFVEAK 74 (74)
T ss_pred CeeecC--CCCCHHHHHHHHHHcCCCcEEEecCCc-----c---ccCCCCcccEEEE--CCEEEeCHHHHHHHHhcC
Confidence 344553 478999999999999999999854221 1 2667899999997 788999999999999864
No 64
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=99.28 E-value=9.8e-12 Score=106.52 Aligned_cols=76 Identities=24% Similarity=0.373 Sum_probs=69.0
Q ss_pred hhhhhhccCCchHHHHHHHHHhcCCceEEEEcCCCCCCchhHHhhcCCCcccEEEcCCCCeeeccHHHHHHHHHhhcCC
Q 024026 190 KLELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSYSA 268 (273)
Q Consensus 190 ~i~ly~~~~s~~~~~v~~~L~e~gi~y~~~~v~~~~~~~~~~~~~~~~~~VP~l~d~~~~~~l~eS~~I~~yL~~~y~~ 268 (273)
++++|+...++++.+++..|.++|++|+++.++.. ++.++|+++||.++||+|+| +++.|+||.+|++||+++|+.
T Consensus 10 ~~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~-~~~~~~~~~nP~g~VPvL~~--~g~~l~ES~AIl~YL~~~~~~ 85 (211)
T PRK09481 10 VMTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKD-NLPQDLIDLNPYQSVPTLVD--RELTLYESRIIMEYLDERFPH 85 (211)
T ss_pred eeEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCcc-cCCHHHHHhCCCCCCCEEEE--CCEEeeCHHHHHHHHHHhCCC
Confidence 57899999999999999999999999999998753 56689999999999999998 468999999999999999975
No 65
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=99.27 E-value=1.6e-11 Score=87.60 Aligned_cols=73 Identities=23% Similarity=0.381 Sum_probs=63.2
Q ss_pred hhhhhccCCchHHHHHHHHHhcCCceEEEEcCCCCCCchhHHhhcCC-CcccEEEcCCCCeeeccHHHHHHHHHhhc
Q 024026 191 LELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGS-KEVPYLIDPNTSTQIGDYKKILSYLFQSY 266 (273)
Q Consensus 191 i~ly~~~~s~~~~~v~~~L~e~gi~y~~~~v~~~~~~~~~~~~~~~~-~~VP~l~d~~~~~~l~eS~~I~~yL~~~y 266 (273)
+++|....++++++++..|.++|++|..+.++.. ++.+++.++||. ++||+|+++ +..++||.+|++||++++
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~-~~~~~~~~~~p~~~~vP~l~~~--~~~l~eS~aI~~yL~~~~ 74 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDLG-NKSELLLASNPVHKKIPVLLHN--GKPICESLIIVEYIDEAW 74 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCcc-cCCHHHHHhCCCCCCCCEEEEC--CEEeehHHHHHHHHHhhC
Confidence 3578888999999999999999999999887653 566788999995 999999984 578999999999999875
No 66
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=1.4e-11 Score=105.43 Aligned_cols=80 Identities=29% Similarity=0.446 Sum_probs=69.6
Q ss_pred hhhhccCCchHHHHHHHHHhcCCceEEEEcCCC-CCCchhHHhhcCCCcccEEEcCCCCeeeccHHHHHHHHHhhcCCC-
Q 024026 192 ELFSYENNPYARIVREALCELELPYILQNVGDG-SSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSYSAS- 269 (273)
Q Consensus 192 ~ly~~~~s~~~~~v~~~L~e~gi~y~~~~v~~~-~~~~~~~~~~~~~~~VP~l~d~~~~~~l~eS~~I~~yL~~~y~~~- 269 (273)
++|....+++++++...|.++|++|+.+.|+.. .++.++|+++||.++||+|++++++ .|+||.+|++||+++|+..
T Consensus 2 ~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~~~nP~gkVPvL~~~~~~-~l~ES~AI~~YL~~~~~~~~ 80 (211)
T COG0625 2 KLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDFLALNPLGKVPALVDDDGE-VLTESGAILEYLAERYPGPP 80 (211)
T ss_pred eeecCCCCcchHHHHHHHHHcCCCceEEEeCcccccCCHHHHhcCCCCCCCEEeeCCCC-eeecHHHHHHHHHhhCCCCC
Confidence 567777889999999999999999999999765 4777899999999999999987543 8999999999999999865
Q ss_pred CCC
Q 024026 270 PSP 272 (273)
Q Consensus 270 ~~~ 272 (273)
..|
T Consensus 81 l~p 83 (211)
T COG0625 81 LLP 83 (211)
T ss_pred cCC
Confidence 444
No 67
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=99.27 E-value=2.8e-11 Score=89.95 Aligned_cols=70 Identities=17% Similarity=0.245 Sum_probs=61.7
Q ss_pred cCCchHHHHHHHHHhcCCceEEEEcCCCCCCchhHHhhcCCCcccEEEcCCCCeeeccHHHHHHHHHhhcCCC
Q 024026 197 ENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSYSAS 269 (273)
Q Consensus 197 ~~s~~~~~v~~~L~e~gi~y~~~~v~~~~~~~~~~~~~~~~~~VP~l~d~~~~~~l~eS~~I~~yL~~~y~~~ 269 (273)
..|++|++++..|.++|++|.+.+++.. .+.++|+++||.++||+|+| ++..++||.+|++||+++|...
T Consensus 20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~-~~p~~~~~~nP~g~vPvL~~--~~~~i~eS~~I~eYLde~~~~~ 89 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVVFNVTTVDMK-RKPEDLKDLAPGTQPPFLLY--NGEVKTDNNKIEEFLEETLCPP 89 (91)
T ss_pred CCChhHHHHHHHHHHCCCceEEEEeCCC-CCCHHHHHhCCCCCCCEEEE--CCEEecCHHHHHHHHHHHccCC
Confidence 4689999999999999999999988654 34578999999999999998 4689999999999999998753
No 68
>PRK10638 glutaredoxin 3; Provisional
Probab=99.26 E-value=3.2e-11 Score=88.22 Aligned_cols=72 Identities=17% Similarity=0.394 Sum_probs=62.0
Q ss_pred ceEEEecCCCchHHHHHHHHHHcCCceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCccccChHHHHHHHH
Q 024026 69 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLF 143 (273)
Q Consensus 69 ~l~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~~l~ES~aI~~YL~ 143 (273)
.++||+.++||||++++.+|+++|++|+.++++.+... ++.+.+.+|..+||+|+. +|..+....++..+-.
T Consensus 3 ~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~-~~~l~~~~g~~~vP~i~~--~g~~igG~~~~~~~~~ 74 (83)
T PRK10638 3 NVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDAAK-REEMIKRSGRTTVPQIFI--DAQHIGGCDDLYALDA 74 (83)
T ss_pred cEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHHH-HHHHHHHhCCCCcCEEEE--CCEEEeCHHHHHHHHH
Confidence 68999999999999999999999999999999865433 344568999999999986 6899999998888743
No 69
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=99.24 E-value=3e-11 Score=86.81 Aligned_cols=74 Identities=23% Similarity=0.252 Sum_probs=61.5
Q ss_pred hhhhccCCchHHHHHHHHHhcCCceEEEEcCC--CCCCchhHHhhcCCCcccEEEcCCCCeeeccHHHHHHHHHhhcC
Q 024026 192 ELFSYENNPYARIVREALCELELPYILQNVGD--GSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSYS 267 (273)
Q Consensus 192 ~ly~~~~s~~~~~v~~~L~e~gi~y~~~~v~~--~~~~~~~~~~~~~~~~VP~l~d~~~~~~l~eS~~I~~yL~~~y~ 267 (273)
++|....+ .+++++..|.++|++|..+.+.. +.++.+++.++||.++||+|+++ +|..++||.+|++||+++|+
T Consensus 2 ~Ly~~~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~~~vP~l~~~-~g~~l~eS~aI~~yL~~~~p 77 (77)
T cd03057 2 KLYYSPGA-CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPKGQVPALVLD-DGEVLTESAAILQYLADLHP 77 (77)
T ss_pred EEEeCCCC-chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCCCCCCEEEEC-CCcEEEcHHHHHHHHHHhCc
Confidence 46666654 47789999999999999987753 44667899999999999999975 36789999999999999884
No 70
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=99.24 E-value=2.3e-11 Score=86.61 Aligned_cols=70 Identities=26% Similarity=0.288 Sum_probs=61.1
Q ss_pred hhhhccCCchHHHHHHHHHhcCCceEEEEcC--CCCCCchhHHhhcCCCcccEEEcCCCCeeeccHHHHHHHHH
Q 024026 192 ELFSYENNPYARIVREALCELELPYILQNVG--DGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLF 263 (273)
Q Consensus 192 ~ly~~~~s~~~~~v~~~L~e~gi~y~~~~v~--~~~~~~~~~~~~~~~~~VP~l~d~~~~~~l~eS~~I~~yL~ 263 (273)
++|....++.+++++..|.++|++|..+.++ .+.++.++|.++||.++||+|+++ +..|+||.+|++||.
T Consensus 2 ~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~~~vP~L~~~--~~~l~eS~aI~~YL~ 73 (73)
T cd03047 2 TIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPNGRVPVLEDG--DFVLWESNAILRYLA 73 (73)
T ss_pred EEEecCCCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCCCCCCEEEEC--CEEEECHHHHHHHhC
Confidence 5777888999999999999999999998875 334567889999999999999984 578999999999984
No 71
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=1.3e-10 Score=98.91 Aligned_cols=146 Identities=14% Similarity=0.148 Sum_probs=100.7
Q ss_pred CceEEEecCCCchHHHHHHHHHHcCCceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCccccChHHHHHHHHHHhC
Q 024026 68 TRLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYG 147 (273)
Q Consensus 68 ~~l~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~~l~ES~aI~~YL~~~~~ 147 (273)
..++|+++.....|..+|+++...|++||.+.+..++. -..++...|.+|+|+|.. ||..|.+|.||++||+++||
T Consensus 2 ~~ykL~Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~~~--w~~~K~~~pfgqlP~l~v--Dg~~i~QS~AI~RyLArk~g 77 (206)
T KOG1695|consen 2 PPYKLTYFNIRGLAEPIRLLFAYAGVSFEDKRITMEDA--WEELKDKMPFGQLPVLEV--DGKKLVQSRAILRYLARKFG 77 (206)
T ss_pred CceEEEecCcchhHHHHHHHHHhcCCCcceeeeccccc--hhhhcccCCCCCCCEEeE--CCEeeccHHHHHHHHHHHhC
Confidence 35789999999999999999999999999999987652 223445689999999986 79999999999999999998
Q ss_pred CCCCCCCChhHHHHHHhhhhhHHhhcccchhh--cccCCCCCchhhh-hhhccCCchHHHHHHHHHhcCCceEEEE
Q 024026 148 KGRSPSTGLLESTLITGWMPTIFRAGRGMTLW--EKARPDPPSKKLE-LFSYENNPYARIVREALCELELPYILQN 220 (273)
Q Consensus 148 ~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~--~~~~~~~~~~~i~-ly~~~~s~~~~~v~~~L~e~gi~y~~~~ 220 (273)
- -..++.|.+.++...+.+.........+ ........+..++ .+.-....++..+...|..++..|++++
T Consensus 78 l---~Gkt~~E~a~vD~i~d~~~D~~~~~~~~~~~~~~~g~~~~~~~~~~~Pa~~~~~~~~~~~L~~~~sgflvGd 150 (206)
T KOG1695|consen 78 L---AGKTEEEEAWVDMIVDQFKDFRWEIFRQPYTAPEAGKSEEELDKLYLPAKPKYFKILEKILKKNKSGFLVGD 150 (206)
T ss_pred c---CCCCHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhccchhhhhhhhccchHHHHHHHHHHHHhCCCCeeecC
Confidence 3 2334566666655544221111110011 1111112222222 4444556788889999997777898775
No 72
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.22 E-value=3.7e-11 Score=85.02 Aligned_cols=70 Identities=27% Similarity=0.386 Sum_probs=62.0
Q ss_pred hhhhccCCchHHHHHHHHHhcCCceEEEEcC--CCCCCchhHHhhcCCCcccEEEcCCCCeeeccHHHHHHHHH
Q 024026 192 ELFSYENNPYARIVREALCELELPYILQNVG--DGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLF 263 (273)
Q Consensus 192 ~ly~~~~s~~~~~v~~~L~e~gi~y~~~~v~--~~~~~~~~~~~~~~~~~VP~l~d~~~~~~l~eS~~I~~yL~ 263 (273)
++|....++++++++..|.++|++|..+.+. .+.++.+++.++||.++||+|+++ +..++||.+|++||.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~--~~~i~es~aI~~yl~ 73 (73)
T cd03056 2 KLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPNGEVPVLELD--GRVLAESNAILVYLA 73 (73)
T ss_pred EEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCCCCCCEEEEC--CEEEEcHHHHHHHhC
Confidence 5788889999999999999999999999886 445677889999999999999984 678999999999984
No 73
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=99.21 E-value=3.9e-11 Score=85.86 Aligned_cols=73 Identities=22% Similarity=0.232 Sum_probs=63.3
Q ss_pred hhhhhccCCchHHHHHHHHHhcCCceEEEEcCC--CCCCchhHHhhcCCCcccEEEcCCCCeeeccHHHHHHHHHhh
Q 024026 191 LELFSYENNPYARIVREALCELELPYILQNVGD--GSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQS 265 (273)
Q Consensus 191 i~ly~~~~s~~~~~v~~~L~e~gi~y~~~~v~~--~~~~~~~~~~~~~~~~VP~l~d~~~~~~l~eS~~I~~yL~~~ 265 (273)
+++|....++++++++..|.++|++|..+.+.. +.++.+++.++||.++||+|+++ +..++||.+|++||+++
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~~~--g~~l~es~aI~~yL~~~ 76 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPFGQIPALEDG--DLKLFESRAITRYLAEK 76 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCCCCCCEEEEC--CEEEEcHHHHHHHHhhC
Confidence 467888899999999999999999999987753 33566789999999999999984 67899999999999863
No 74
>PRK15113 glutathione S-transferase; Provisional
Probab=99.21 E-value=3.1e-11 Score=103.64 Aligned_cols=77 Identities=23% Similarity=0.328 Sum_probs=67.7
Q ss_pred hhhhhhcc--CCchHHHHHHHHHhcCCceEEEEcCC--CCCCchhHHhhcCCCcccEEEcCCCCeeeccHHHHHHHHHhh
Q 024026 190 KLELFSYE--NNPYARIVREALCELELPYILQNVGD--GSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQS 265 (273)
Q Consensus 190 ~i~ly~~~--~s~~~~~v~~~L~e~gi~y~~~~v~~--~~~~~~~~~~~~~~~~VP~l~d~~~~~~l~eS~~I~~yL~~~ 265 (273)
++++|... .+++++++...|.++|++|+.+.++. ++++.++|+++||.++||+|+|+ +..|+||.+|++||+++
T Consensus 5 ~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~~~--~~~l~ES~aI~~YL~~~ 82 (214)
T PRK15113 5 AITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLTRRVPTLQHD--DFELSESSAIAEYLEER 82 (214)
T ss_pred eEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCCCCCCEEEEC--CEEEecHHHHHHHHHHH
Confidence 46788754 69999999999999999999998863 55677899999999999999984 68999999999999999
Q ss_pred cCC
Q 024026 266 YSA 268 (273)
Q Consensus 266 y~~ 268 (273)
|+.
T Consensus 83 ~~~ 85 (214)
T PRK15113 83 FAP 85 (214)
T ss_pred cCC
Confidence 975
No 75
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=99.20 E-value=6.2e-11 Score=83.94 Aligned_cols=69 Identities=23% Similarity=0.292 Sum_probs=60.4
Q ss_pred hhhhccCCchHHHHHHHHHhcCCceEEEEcCCCCCCchhHHhhcCCCcccEEEcCCCCeeeccHHHHHHHH
Q 024026 192 ELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYL 262 (273)
Q Consensus 192 ~ly~~~~s~~~~~v~~~L~e~gi~y~~~~v~~~~~~~~~~~~~~~~~~VP~l~d~~~~~~l~eS~~I~~yL 262 (273)
.+|....|++|++++..|+++|++|..++++.. .+.+++.++||.++||+|+++ +|..++||.+|++|+
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~-~~~~~~~~~np~~~vP~L~~~-~g~~l~eS~aI~~y~ 70 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGITVELREVELK-NKPAEMLAASPKGTVPVLVLG-NGTVIEESLDIMRWA 70 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCC-CCCHHHHHHCCCCCCCEEEEC-CCcEEecHHHHHHhh
Confidence 467888999999999999999999999988753 355789999999999999975 367899999999997
No 76
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=99.19 E-value=5e-11 Score=84.41 Aligned_cols=71 Identities=27% Similarity=0.266 Sum_probs=61.2
Q ss_pred hhhhccCCchHHHHHHHHHhcCCceEEEEcCC--CCCCchhHHhhcCCCcccEEEcCCCCeeeccHHHHHHHHH
Q 024026 192 ELFSYENNPYARIVREALCELELPYILQNVGD--GSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLF 263 (273)
Q Consensus 192 ~ly~~~~s~~~~~v~~~L~e~gi~y~~~~v~~--~~~~~~~~~~~~~~~~VP~l~d~~~~~~l~eS~~I~~yL~ 263 (273)
++|..+.|++|++++..|.++|++|..+.+.. +.++.+++.++||.++||+|+++ ++..++||.+|++||+
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~-~~~~l~es~aI~~yLe 74 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLELD-DGTVITESVAICRYLE 74 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCCCCCCEEEeC-CCCEEecHHHHHHHhC
Confidence 57888899999999999999999999988753 34566789999999999999854 3578999999999985
No 77
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=99.19 E-value=6.8e-11 Score=84.46 Aligned_cols=73 Identities=25% Similarity=0.321 Sum_probs=61.2
Q ss_pred hhhhccCCchHHHHHHHHHhcCCceEEEEcCC--CCCCchhHHhhcCCCcccEEEcCCCCeeeccHHHHHHHHHhhcC
Q 024026 192 ELFSYENNPYARIVREALCELELPYILQNVGD--GSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSYS 267 (273)
Q Consensus 192 ~ly~~~~s~~~~~v~~~L~e~gi~y~~~~v~~--~~~~~~~~~~~~~~~~VP~l~d~~~~~~l~eS~~I~~yL~~~y~ 267 (273)
++|.... ..+.+++..|.++|++|..+.++. +..+.++|.++||.++||+|+++ +..++||.+|++||+++|+
T Consensus 2 ~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~--g~~l~es~aI~~yL~~~~~ 76 (76)
T cd03046 2 TLYHLPR-SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPLGKVPVLVDG--DLVLTESAAIILYLAEKYG 76 (76)
T ss_pred EEEeCCC-CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCCCCCCEEEEC--CEEEEcHHHHHHHHHHhCc
Confidence 4565554 457889999999999999988764 34677899999999999999974 5789999999999999985
No 78
>PLN02473 glutathione S-transferase
Probab=99.18 E-value=5.7e-11 Score=101.68 Aligned_cols=77 Identities=12% Similarity=0.126 Sum_probs=68.0
Q ss_pred hhhhhhccCCchHHHHHHHHHhcCCceEEEEcC--CCCCCchhHHhhcCCCcccEEEcCCCCeeeccHHHHHHHHHhhcC
Q 024026 190 KLELFSYENNPYARIVREALCELELPYILQNVG--DGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSYS 267 (273)
Q Consensus 190 ~i~ly~~~~s~~~~~v~~~L~e~gi~y~~~~v~--~~~~~~~~~~~~~~~~~VP~l~d~~~~~~l~eS~~I~~yL~~~y~ 267 (273)
.+++|....++++++++..|.++|++|..+.++ .++++.++++++||.++||+|+| ++..|+||.+|++||+++|+
T Consensus 2 ~~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~--~g~~l~ES~aI~~YL~~~~~ 79 (214)
T PLN02473 2 VVKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPFGQVPAIED--GDLKLFESRAIARYYATKYA 79 (214)
T ss_pred ceEEecCCCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCCCCCCeEEE--CCEEEEehHHHHHHHHHHcC
Confidence 457898888999999999999999999998774 34577889999999999999998 45899999999999999997
Q ss_pred C
Q 024026 268 A 268 (273)
Q Consensus 268 ~ 268 (273)
.
T Consensus 80 ~ 80 (214)
T PLN02473 80 D 80 (214)
T ss_pred C
Confidence 4
No 79
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=99.18 E-value=2.5e-11 Score=104.31 Aligned_cols=85 Identities=18% Similarity=0.266 Sum_probs=73.3
Q ss_pred CCCCCCCceEEEecCCCchHHHHHHHHHHcCCceEEEECC--CCChhhHHHHHHhCCCCcccEEEeCCCCccccChHHHH
Q 024026 62 SNSDSPTRLQLFEFEACPFCRRVREAITELDLSVEVFPCP--KGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIV 139 (273)
Q Consensus 62 ~~~~~~~~l~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~--~~~~~~~~~~~~~~p~~~vP~L~d~~~g~~l~ES~aI~ 139 (273)
+++.+...+.||+++.|-.++|||+++.|+||+|+.++|+ .+++..++|+ .+||.+.||||++ +..+|.++..|+
T Consensus 19 ka~~~~e~~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFm-rlNp~gevPVl~~--g~~II~d~tqII 95 (325)
T KOG4420|consen 19 KAHWPRESLVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFM-RLNPGGEVPVLIH--GDNIISDYTQII 95 (325)
T ss_pred CCCCchhcceeeecCcccccceeeeehhhcccccceeeccCccccccCchhe-ecCCCCCCceEec--CCeecccHHHHH
Confidence 3445555699999999999999999999999999998774 5777778887 9999999999996 577899999999
Q ss_pred HHHHHHhCCC
Q 024026 140 NYLFQQYGKG 149 (273)
Q Consensus 140 ~YL~~~~~~~ 149 (273)
+|++++|-..
T Consensus 96 dYvErtf~ge 105 (325)
T KOG4420|consen 96 DYVERTFTGE 105 (325)
T ss_pred HHHHHhhccc
Confidence 9999999543
No 80
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=99.18 E-value=3.2e-11 Score=86.04 Aligned_cols=72 Identities=15% Similarity=0.086 Sum_probs=61.4
Q ss_pred hhhhhccCCchHHHHHHHHHhcCCceEEEEcCCCCCCchhHHhhcCCCcccEEEcCCCCeeeccHHHHHHHHHhh
Q 024026 191 LELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQS 265 (273)
Q Consensus 191 i~ly~~~~s~~~~~v~~~L~e~gi~y~~~~v~~~~~~~~~~~~~~~~~~VP~l~d~~~~~~l~eS~~I~~yL~~~ 265 (273)
+++|.+..++.+++++..|.++|++|+.+.++.+ +..+++.++||.++||+|+|+ +..++||.+|++||+++
T Consensus 2 ~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~~-~~~~~~~~~~p~~~vP~l~~~--~~~l~es~aI~~yL~~~ 73 (73)
T cd03076 2 YTLTYFPVRGRAEAIRLLLADQGISWEEERVTYE-EWQESLKPKMLFGQLPCFKDG--DLTLVQSNAILRHLGRK 73 (73)
T ss_pred cEEEEeCCcchHHHHHHHHHHcCCCCEEEEecHH-HhhhhhhccCCCCCCCEEEEC--CEEEEcHHHHHHHHhcC
Confidence 4677778899999999999999999999988642 344578899999999999984 57899999999999863
No 81
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=99.18 E-value=9.6e-11 Score=82.92 Aligned_cols=67 Identities=34% Similarity=0.521 Sum_probs=56.2
Q ss_pred CCchHHHHHHHHHhcCCceEEEEcC---CCCCCchhHHhhcCCCcccEEEcCCCCeeeccHHHHHHHHHhh
Q 024026 198 NNPYARIVREALCELELPYILQNVG---DGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQS 265 (273)
Q Consensus 198 ~s~~~~~v~~~L~e~gi~y~~~~v~---~~~~~~~~~~~~~~~~~VP~l~d~~~~~~l~eS~~I~~yL~~~ 265 (273)
.||+++++...|.++|++|.+..+. .+..+.++|.+.||.++||+|+|+ +|..++||.+|++||+++
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~~-~g~vi~eS~~I~~yL~~~ 70 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVDP-DGTVINESLAILEYLEEQ 70 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEET-TTEEEESHHHHHHHHHHT
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcCeEEEEEEEC-CCCEeeCHHHHHHHHhcC
Confidence 4899999999999999999988772 344566889999999999999986 456999999999999874
No 82
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=99.17 E-value=4.6e-11 Score=85.83 Aligned_cols=74 Identities=26% Similarity=0.326 Sum_probs=61.4
Q ss_pred hhhhhccCCchHHHHHHHHHhcCCceEEEEcCCCCCCchhHHhhcCCCcccEEEcCC--CCeeeccHHHHHHHHHhhcC
Q 024026 191 LELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPN--TSTQIGDYKKILSYLFQSYS 267 (273)
Q Consensus 191 i~ly~~~~s~~~~~v~~~L~e~gi~y~~~~v~~~~~~~~~~~~~~~~~~VP~l~d~~--~~~~l~eS~~I~~yL~~~y~ 267 (273)
+++|....|++|++++..|.++|++|..++++.. ..++ ++.+|.++||+|++++ ++..|+||.+|++||+++.|
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~~--~~~~-~~~~~~~~vP~l~~~~~~~~~~l~eS~~I~~yL~~~~~ 77 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNPV--SRKE-IKWSSYKKVPILRVESGGDGQQLVDSSVIISTLKTYLG 77 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCCceEEEECCch--hHHH-HHHhCCCccCEEEECCCCCccEEEcHHHHHHHHHHHcC
Confidence 4678889999999999999999999999987532 2233 4679999999999752 36789999999999998754
No 83
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=99.17 E-value=8.6e-11 Score=83.09 Aligned_cols=70 Identities=17% Similarity=0.322 Sum_probs=59.2
Q ss_pred hhhhccCCchHHHHHHHHHhcCCceEEEEcCCCCCCchhHHhhcCCCcccEEEcCCCCeeeccHHHHHHHHHh
Q 024026 192 ELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQ 264 (273)
Q Consensus 192 ~ly~~~~s~~~~~v~~~L~e~gi~y~~~~v~~~~~~~~~~~~~~~~~~VP~l~d~~~~~~l~eS~~I~~yL~~ 264 (273)
++|....|++|++++..|.++|++|..+.++.+. ....++.+|.++||+|++++ +..++||.+|++||++
T Consensus 2 ~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~--~~~~~~~~~~~~vP~L~~~~-~~~l~es~aI~~yL~~ 71 (71)
T cd03037 2 KLYIYEHCPFCVKARMIAGLKNIPVEQIILQNDD--EATPIRMIGAKQVPILEKDD-GSFMAESLDIVAFIDE 71 (71)
T ss_pred ceEecCCCcHhHHHHHHHHHcCCCeEEEECCCCc--hHHHHHhcCCCccCEEEeCC-CeEeehHHHHHHHHhC
Confidence 5788899999999999999999999998876432 23456789999999998753 5789999999999974
No 84
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=99.16 E-value=3.4e-11 Score=85.40 Aligned_cols=71 Identities=15% Similarity=0.100 Sum_probs=60.1
Q ss_pred hhhhccCCchHHHHHHHHHhcCCceEEEEcCCCCCCchhHHhhcCCCcccEEEcCCCCeeeccHHHHHHHHHh
Q 024026 192 ELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQ 264 (273)
Q Consensus 192 ~ly~~~~s~~~~~v~~~L~e~gi~y~~~~v~~~~~~~~~~~~~~~~~~VP~l~d~~~~~~l~eS~~I~~yL~~ 264 (273)
++|....++.+++++..|.++|++|..+.++.......++.++||.++||+|+++ +..++||.+|++||++
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~~~~~~~~p~~~vP~L~~~--~~~l~es~aI~~yL~~ 72 (72)
T cd03039 2 KLTYFNIRGRGEPIRLLLADAGVEYEDVRITYEEWPELDLKPTLPFGQLPVLEID--GKKLTQSNAILRYLAR 72 (72)
T ss_pred EEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHHHhhhhhhccCCcCCCCCEEEEC--CEEEEecHHHHHHhhC
Confidence 4677778889999999999999999999886543344558889999999999984 6889999999999974
No 85
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=99.16 E-value=7.1e-11 Score=101.39 Aligned_cols=77 Identities=22% Similarity=0.329 Sum_probs=64.7
Q ss_pred hhhhhccCCchHHHHHHHHHhcCCceEEEEcC--CCCCCchhHHhhcCCCcccEEEcC---CCC--eeeccHHHHHHHHH
Q 024026 191 LELFSYENNPYARIVREALCELELPYILQNVG--DGSSRTKLLVDITGSKEVPYLIDP---NTS--TQIGDYKKILSYLF 263 (273)
Q Consensus 191 i~ly~~~~s~~~~~v~~~L~e~gi~y~~~~v~--~~~~~~~~~~~~~~~~~VP~l~d~---~~~--~~l~eS~~I~~yL~ 263 (273)
+++|... ++++++++..|.++|++|+.+.++ .+.++.++|+++||.++||+|+++ +++ +.|+||.+|++||+
T Consensus 2 ~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP~gkVP~L~~~~~~d~g~~~~L~ES~AI~~YL~ 80 (215)
T PRK13972 2 IDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPNNKIPAIVDHSPADGGEPLSLFESGAILLYLA 80 (215)
T ss_pred eEEEECC-CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCcCCCCCEEEeCCCCCCCCceeEEcHHHHHHHHH
Confidence 4677655 688999999999999999998875 355667899999999999999973 234 57999999999999
Q ss_pred hhcCC
Q 024026 264 QSYSA 268 (273)
Q Consensus 264 ~~y~~ 268 (273)
++|+.
T Consensus 81 ~~~~~ 85 (215)
T PRK13972 81 EKTGL 85 (215)
T ss_pred HhcCC
Confidence 99864
No 86
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=99.16 E-value=1.3e-10 Score=83.29 Aligned_cols=72 Identities=17% Similarity=0.182 Sum_probs=62.2
Q ss_pred hhhhccCCchHHHHHHHHHhcCCceEEEEcCCC-CCCchhHHhhcCCCcccEEEcCCCCeeeccHHHHHHHHHh
Q 024026 192 ELFSYENNPYARIVREALCELELPYILQNVGDG-SSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQ 264 (273)
Q Consensus 192 ~ly~~~~s~~~~~v~~~L~e~gi~y~~~~v~~~-~~~~~~~~~~~~~~~VP~l~d~~~~~~l~eS~~I~~yL~~ 264 (273)
++|....++.+++++..|.++|++|..+.++.. .++.++|.++||.++||+|++++ +..++||.+|++||++
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~nP~~~vP~L~~~~-g~~l~es~aI~~yL~~ 74 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKENKTPEFLKKFPLGKVPAFEGAD-GFCLFESNAIAYYVAN 74 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCceEEEecccccccCCHHHHHhCCCCCCCEEEcCC-CCEEeeHHHHHHHHhh
Confidence 467788889999999999999999999988643 25678899999999999999753 5689999999999975
No 87
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=99.15 E-value=2.2e-10 Score=81.65 Aligned_cols=69 Identities=16% Similarity=0.159 Sum_probs=58.1
Q ss_pred ceEEEecCCCchHHHHHHHHHHcCCceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCccccChHHHHH
Q 024026 69 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVN 140 (273)
Q Consensus 69 ~l~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~~l~ES~aI~~ 140 (273)
.++||+.++||+|++++.+|+++||+|+.+++...... .+.+++++|..+||++.. +|..+..-.++.+
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~-~~el~~~~g~~~vP~v~i--~~~~iGg~~~~~~ 70 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPER-KAELEERTGSSVVPQIFF--NEKLVGGLTDLKS 70 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHHH-HHHHHHHhCCCCcCEEEE--CCEEEeCHHHHHh
Confidence 58999999999999999999999999999999876543 445668999999999986 6787777666544
No 88
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=99.13 E-value=1.5e-10 Score=85.90 Aligned_cols=76 Identities=21% Similarity=0.263 Sum_probs=65.4
Q ss_pred CCchhhhhhhccCCchHHHHHHHHHhcCCceEEEEcCCCCCCchhHHhhcCCCcccEEEcCCCCeeeccHHHHHHHHH
Q 024026 186 PPSKKLELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLF 263 (273)
Q Consensus 186 ~~~~~i~ly~~~~s~~~~~v~~~L~e~gi~y~~~~v~~~~~~~~~~~~~~~~~~VP~l~d~~~~~~l~eS~~I~~yL~ 263 (273)
..+..+++|....|++|++++..|.++|++|..+++... ...+++.+.||.++||+|+++ ++..++||.+|++||+
T Consensus 14 ~~~~~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~-~~~~~~~~~np~~~vPvL~~~-~g~~l~eS~aI~~yLe 89 (89)
T cd03055 14 PVPGIIRLYSMRFCPYAQRARLVLAAKNIPHEVININLK-DKPDWFLEKNPQGKVPALEID-EGKVVYESLIICEYLD 89 (89)
T ss_pred CCCCcEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCC-CCcHHHHhhCCCCCcCEEEEC-CCCEEECHHHHHHhhC
Confidence 455678999999999999999999999999999988653 344678899999999999974 3578999999999985
No 89
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.12 E-value=4e-10 Score=79.25 Aligned_cols=71 Identities=18% Similarity=0.416 Sum_probs=58.7
Q ss_pred ceEEEecCCCchHHHHHHHHHHcCCceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCccc--cChHHHHHHH
Q 024026 69 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSM--YESGDIVNYL 142 (273)
Q Consensus 69 ~l~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~~l--~ES~aI~~YL 142 (273)
+++||+.++||+|++++.+|++++++|+.++++.......+ +.+.++...||+|++ +|..+ +++.+|.++|
T Consensus 1 ~i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~-~~~~~~~~~vP~~~~--~~~~~~g~~~~~i~~~i 73 (74)
T TIGR02196 1 KVKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKDSAAREE-VLKVLGQRGVPVIVI--GHKIIVGFDPEKLDQLL 73 (74)
T ss_pred CEEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCCHHHHHH-HHHHhCCCcccEEEE--CCEEEeeCCHHHHHHHh
Confidence 58999999999999999999999999999999865443344 447889999999997 47666 7777777765
No 90
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=99.11 E-value=5.3e-10 Score=78.10 Aligned_cols=70 Identities=20% Similarity=0.418 Sum_probs=60.6
Q ss_pred ceEEEecCCCchHHHHHHHHHHcCCceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCccccChHHHHHH
Q 024026 69 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNY 141 (273)
Q Consensus 69 ~l~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~~l~ES~aI~~Y 141 (273)
+++||+.++||+|++++.+|.+++++|+.+++..... ..+.+.+++|..++|++.. +|..+.++.+|.+.
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~-~~~~l~~~~~~~~~P~~~~--~~~~igg~~~~~~~ 70 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDGE-LREELKELSGWPTVPQIFI--NGEFIGGYDDLKAL 70 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCCHH-HHHHHHHHhCCCCcCEEEE--CCEEEecHHHHHHh
Confidence 4789999999999999999999999999999987653 4455668899999999996 78999999888764
No 91
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.11 E-value=2.5e-10 Score=81.11 Aligned_cols=70 Identities=27% Similarity=0.263 Sum_probs=60.3
Q ss_pred hhhhccCCchHHHHHHHHHh--cCCceEEEEcCCCCCCchhHHhhcCCCcccEEEcCCCCeeeccHHHHHHHHH
Q 024026 192 ELFSYENNPYARIVREALCE--LELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLF 263 (273)
Q Consensus 192 ~ly~~~~s~~~~~v~~~L~e--~gi~y~~~~v~~~~~~~~~~~~~~~~~~VP~l~d~~~~~~l~eS~~I~~yL~ 263 (273)
++|....++++++++..|.+ +|++|..+.++. ..+.++++++||.++||+|+++ ++..++||.+|++||+
T Consensus 2 ~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~-~~~~~~~~~~~p~~~vP~l~~~-~g~~l~es~aI~~yLe 73 (73)
T cd03049 2 KLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNP-WSDDESLLAVNPLGKIPALVLD-DGEALFDSRVICEYLD 73 (73)
T ss_pred EEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCc-ccCChHHHHhCCCCCCCEEEEC-CCCEEECHHHHHhhhC
Confidence 57888899999999999999 889999988764 3456789999999999999854 3578999999999985
No 92
>PRK10387 glutaredoxin 2; Provisional
Probab=99.10 E-value=2.2e-10 Score=97.59 Aligned_cols=76 Identities=18% Similarity=0.349 Sum_probs=63.6
Q ss_pred hhhhhccCCchHHHHHHHHHhcCCceEEEEcCCCCCCchhHHhhcCCCcccEEEcCCCCeeeccHHHHHHHHHhhcCCC
Q 024026 191 LELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSYSAS 269 (273)
Q Consensus 191 i~ly~~~~s~~~~~v~~~L~e~gi~y~~~~v~~~~~~~~~~~~~~~~~~VP~l~d~~~~~~l~eS~~I~~yL~~~y~~~ 269 (273)
+++|+...|++|.+++..|+++|++|+.+++..+.+..+ .+.+|.++||+|+.+ +|..|+||.+|++||+++|+..
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~~~~~~--~~~~p~~~VPvL~~~-~g~~l~eS~aI~~yL~~~~~~~ 76 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLANDDEATP--IRMIGQKQVPILQKD-DGSYMPESLDIVHYIDELDGKP 76 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCCchhhH--HHhcCCcccceEEec-CCeEecCHHHHHHHHHHhCCCc
Confidence 367888999999999999999999999998865443322 678999999999533 4688999999999999999853
No 93
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=6.3e-10 Score=80.93 Aligned_cols=74 Identities=19% Similarity=0.389 Sum_probs=60.6
Q ss_pred ceEEEecCCCchHHHHHHHHHHcCCceEEEECCCCCh-hhHHHHHHhCCCCcccEEEeCCCCccccChHHHHHHHHH
Q 024026 69 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSI-RHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQ 144 (273)
Q Consensus 69 ~l~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~~~~-~~~~~~~~~~p~~~vP~L~d~~~g~~l~ES~aI~~YL~~ 144 (273)
++++|+.++||||.+++.+|.++|++|+.++++..+. ..++++++.+|..+||+++. +|..++.+.++-++...
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i--~~~~igg~~d~~~~~~~ 76 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI--GGKHVGGCDDLDALEAK 76 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE--CCEEEeCcccHHHHHhh
Confidence 5899999999999999999999999999999987653 44566766679999999997 67677766666665443
No 94
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=99.08 E-value=3.8e-10 Score=79.84 Aligned_cols=70 Identities=24% Similarity=0.218 Sum_probs=60.7
Q ss_pred hhhhccCCchHHHHHHHHHhcCCceEEEEcC--CCCCCchhHHhhcCCCcccEEEcCCCCeeeccHHHHHHHHH
Q 024026 192 ELFSYENNPYARIVREALCELELPYILQNVG--DGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLF 263 (273)
Q Consensus 192 ~ly~~~~s~~~~~v~~~L~e~gi~y~~~~v~--~~~~~~~~~~~~~~~~~VP~l~d~~~~~~l~eS~~I~~yL~ 263 (273)
++|....++.+.+++..|.++|++|..+.++ .+.++.+++.+++|.++||+|+++ +..++||.+|++||+
T Consensus 2 ~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~--~~~l~es~aI~~yL~ 73 (73)
T cd03042 2 ILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQGLVPTLVID--GLVLTQSLAIIEYLD 73 (73)
T ss_pred EEecCCCCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCCCCCCEEEEC--CEEEEcHHHHHHHhC
Confidence 5677788999999999999999999998875 344567889999999999999985 578999999999985
No 95
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=99.08 E-value=3e-10 Score=81.35 Aligned_cols=60 Identities=20% Similarity=0.266 Sum_probs=53.0
Q ss_pred CCchHHHHHHHHHhcCCceEEEEcCCCCCCchhHHhhcCCCcccEEEcCCCCeeeccHHHHHHHHHhhcC
Q 024026 198 NNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSYS 267 (273)
Q Consensus 198 ~s~~~~~v~~~L~e~gi~y~~~~v~~~~~~~~~~~~~~~~~~VP~l~d~~~~~~l~eS~~I~~yL~~~y~ 267 (273)
.+++|.+++..|.++|++|..+.+.. .+++|.++||+|+++ +..+.||.+|++||+++||
T Consensus 16 ~sp~~~~v~~~L~~~gi~~~~~~~~~--------~~~~p~g~vPvl~~~--g~~l~eS~~I~~yL~~~~~ 75 (75)
T cd03080 16 LSPFCLKVETFLRMAGIPYENKFGGL--------AKRSPKGKLPFIELN--GEKIADSELIIDHLEEKYG 75 (75)
T ss_pred CCHHHHHHHHHHHHCCCCcEEeecCc--------ccCCCCCCCCEEEEC--CEEEcCHHHHHHHHHHHcC
Confidence 68999999999999999999877543 267899999999984 6789999999999999986
No 96
>PRK11752 putative S-transferase; Provisional
Probab=99.06 E-value=3.4e-10 Score=100.53 Aligned_cols=79 Identities=25% Similarity=0.371 Sum_probs=67.0
Q ss_pred hhhhhhhccCCchHHHHHHHHHhc------CCceEEEEcC--CCCCCchhHHhhcCCCcccEEEcCCC--CeeeccHHHH
Q 024026 189 KKLELFSYENNPYARIVREALCEL------ELPYILQNVG--DGSSRTKLLVDITGSKEVPYLIDPNT--STQIGDYKKI 258 (273)
Q Consensus 189 ~~i~ly~~~~s~~~~~v~~~L~e~------gi~y~~~~v~--~~~~~~~~~~~~~~~~~VP~l~d~~~--~~~l~eS~~I 258 (273)
.++++|... ++++++|+..|.++ |++|+.+.|+ .+.++.++|+++||.++||+|+++++ ++.|+||.+|
T Consensus 43 ~~~~Ly~~~-s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~GkVP~Lv~~dg~~~~~L~ES~AI 121 (264)
T PRK11752 43 HPLQLYSLG-TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPNSKIPALLDRSGNPPIRVFESGAI 121 (264)
T ss_pred CCeEEecCC-CCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCCCCCCEEEeCCCCCCeEEEcHHHH
Confidence 468899764 89999999999986 8899988774 34566789999999999999998643 5899999999
Q ss_pred HHHHHhhcCC
Q 024026 259 LSYLFQSYSA 268 (273)
Q Consensus 259 ~~yL~~~y~~ 268 (273)
++||+++|+.
T Consensus 122 l~YL~~~~~~ 131 (264)
T PRK11752 122 LLYLAEKFGA 131 (264)
T ss_pred HHHHHHhcCC
Confidence 9999999974
No 97
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=99.06 E-value=4.5e-10 Score=80.76 Aligned_cols=64 Identities=23% Similarity=0.283 Sum_probs=54.3
Q ss_pred chHHHHHHHHHhcCCceEEEEcC--CCCCCchhHHhhcCC-CcccEEEcCCCCeeeccHHHHHHHHHh
Q 024026 200 PYARIVREALCELELPYILQNVG--DGSSRTKLLVDITGS-KEVPYLIDPNTSTQIGDYKKILSYLFQ 264 (273)
Q Consensus 200 ~~~~~v~~~L~e~gi~y~~~~v~--~~~~~~~~~~~~~~~-~~VP~l~d~~~~~~l~eS~~I~~yL~~ 264 (273)
..+.+++..|++.|++|+...++ .+.++.++|.+.+|. ++||+|+|+ +++.++||.||++||++
T Consensus 10 ~~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~~g~vP~l~~~-~~~~l~es~AI~~YLa~ 76 (76)
T PF02798_consen 10 GRSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPMFGKVPALEDG-DGFVLTESNAILRYLAR 76 (76)
T ss_dssp TTTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTTSSSSSEEEET-TTEEEESHHHHHHHHHH
T ss_pred CchHHHHHHHHHhcccCceEEEecccccccchhhhhcccccceeeEEEEC-CCCEEEcHHHHHHHhCC
Confidence 36788899999999999998775 456667999999999 999999996 48999999999999985
No 98
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=99.05 E-value=1e-09 Score=78.22 Aligned_cols=72 Identities=14% Similarity=0.299 Sum_probs=58.7
Q ss_pred ceEEEecCCCchHHHHHHHHHHcCCceEEEECCCCChhhHHHHHHhCCCC-cccEEEeCCCCccccChHHHHHHHH
Q 024026 69 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKE-QFPFLIDPNTGVSMYESGDIVNYLF 143 (273)
Q Consensus 69 ~l~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~~~~~~~~~~~~~~p~~-~vP~L~d~~~g~~l~ES~aI~~YL~ 143 (273)
+++||+.++||+|.+++.+|+++|++|+.++++.......+ +.+..+.. +||+++. +|..+....++.++-.
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~-~~~~~~~~~~vP~v~i--~g~~igg~~~~~~~~~ 73 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREE-MINRSGGRRTVPQIFI--GDVHIGGCDDLYALER 73 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHH-HHHHhCCCCccCEEEE--CCEEEeChHHHHHHHh
Confidence 37899999999999999999999999999999865333333 44555555 9999996 7899999999988743
No 99
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=99.05 E-value=5e-10 Score=81.88 Aligned_cols=69 Identities=28% Similarity=0.258 Sum_probs=56.7
Q ss_pred cCCchHHHHHHHHHhcCCceEEEEcCCC--CCCchhHHhhcCCCcccEEEcCCCCeeeccHHHHHHHHHhhcC
Q 024026 197 ENNPYARIVREALCELELPYILQNVGDG--SSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSYS 267 (273)
Q Consensus 197 ~~s~~~~~v~~~L~e~gi~y~~~~v~~~--~~~~~~~~~~~~~~~VP~l~d~~~~~~l~eS~~I~~yL~~~y~ 267 (273)
..+++|++++..|.++|++|..+.+... .+..+++ ++||.++||+|+++ ++..++||.+|++||+++|+
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~~p~~~vP~L~~~-~~~~l~eS~aI~~yL~~~~p 84 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TSGGFYTVPVIVDG-SGEVIGDSFAIAEYLEEAYP 84 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccc-cCCCCceeCeEEEC-CCCEEeCHHHHHHHHHHhCc
Confidence 5789999999999999999999877532 2222344 88999999999984 25789999999999999985
No 100
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=99.04 E-value=1.5e-09 Score=80.01 Aligned_cols=75 Identities=16% Similarity=0.340 Sum_probs=61.0
Q ss_pred eEEEecCCCchHHHHHHHHHHc-----CCceEEEECCCCChhhHHHHHHhCCC--CcccEEEeCCCCccccChHHHHHHH
Q 024026 70 LQLFEFEACPFCRRVREAITEL-----DLSVEVFPCPKGSIRHREMVRRLGGK--EQFPFLIDPNTGVSMYESGDIVNYL 142 (273)
Q Consensus 70 l~Ly~~~~~p~~~~vr~~L~e~-----~l~~~~~~v~~~~~~~~~~~~~~~p~--~~vP~L~d~~~g~~l~ES~aI~~YL 142 (273)
+++|+.++||+|.+++.+|+++ +++|+.+++.... ..++.+.+..+. ..||++.. +|..|.++.+|.+|+
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~-~~~~~l~~~~g~~~~tVP~ifi--~g~~igG~~dl~~~~ 78 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEG-ISKADLEKTVGKPVETVPQIFV--DEKHVGGCTDFEQLV 78 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCH-HHHHHHHHHhCCCCCCcCeEEE--CCEEecCHHHHHHHH
Confidence 6899999999999999999999 4678888887433 223334466554 69999986 799999999999999
Q ss_pred HHHhC
Q 024026 143 FQQYG 147 (273)
Q Consensus 143 ~~~~~ 147 (273)
.++++
T Consensus 79 ~~~~~ 83 (86)
T TIGR02183 79 KENFD 83 (86)
T ss_pred Hhccc
Confidence 99875
No 101
>PLN02378 glutathione S-transferase DHAR1
Probab=99.04 E-value=8e-10 Score=94.93 Aligned_cols=70 Identities=20% Similarity=0.299 Sum_probs=61.7
Q ss_pred ccCCchHHHHHHHHHhcCCceEEEEcCCCCCCchhHHhhcCCCcccEEEcCCCCeeeccHHHHHHHHHhhcCC
Q 024026 196 YENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSYSA 268 (273)
Q Consensus 196 ~~~s~~~~~v~~~L~e~gi~y~~~~v~~~~~~~~~~~~~~~~~~VP~l~d~~~~~~l~eS~~I~~yL~~~y~~ 268 (273)
...|++++++...|.++|++|.++.++.. .+.++|+++||.|+||+|+++ +..|+||.+|++||+++|+.
T Consensus 17 ~~~~p~~~rv~~~L~e~gl~~e~~~v~~~-~~~~~~l~inP~G~VPvL~~~--~~~l~ES~aI~~YL~~~~~~ 86 (213)
T PLN02378 17 LGDCPFSQRALLTLEEKSLTYKIHLINLS-DKPQWFLDISPQGKVPVLKID--DKWVTDSDVIVGILEEKYPD 86 (213)
T ss_pred CCCCcchHHHHHHHHHcCCCCeEEEeCcc-cCCHHHHHhCCCCCCCEEEEC--CEEecCHHHHHHHHHHhCCC
Confidence 45699999999999999999999988653 456789999999999999984 46899999999999999975
No 102
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=5.1e-10 Score=97.20 Aligned_cols=76 Identities=30% Similarity=0.373 Sum_probs=69.3
Q ss_pred hhhhhhccCCchHHHHHHHHHhcCCceEEEEc--CCCCCCchhHHhhcCCCcccEEEcCCCCeeeccHHHHHHHHHhhcC
Q 024026 190 KLELFSYENNPYARIVREALCELELPYILQNV--GDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSYS 267 (273)
Q Consensus 190 ~i~ly~~~~s~~~~~v~~~L~e~gi~y~~~~v--~~~~~~~~~~~~~~~~~~VP~l~d~~~~~~l~eS~~I~~yL~~~y~ 267 (273)
.+++|+...++.++.+-..+.++|++|+++.+ ..++++.++|+++||+++||+|+|+ ++.++||.||+.||.++|+
T Consensus 2 ~~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP~~kVP~l~d~--~~~l~eS~AI~~Yl~~ky~ 79 (226)
T KOG0867|consen 2 KLKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNPLGKVPALEDG--GLTLWESHAILRYLAEKYG 79 (226)
T ss_pred CceEeecCCCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCcCCCCCeEecC--CeEEeeHHHHHHHHHHHcC
Confidence 35688889999999999999999999999855 4688999999999999999999995 8999999999999999997
No 103
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=99.03 E-value=1e-09 Score=95.77 Aligned_cols=70 Identities=16% Similarity=0.207 Sum_probs=62.6
Q ss_pred ccCCchHHHHHHHHHhcCCceEEEEcCCCCCCchhHHhhcCCCcccEEEcCCCCeeeccHHHHHHHHHhhcCC
Q 024026 196 YENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSYSA 268 (273)
Q Consensus 196 ~~~s~~~~~v~~~L~e~gi~y~~~~v~~~~~~~~~~~~~~~~~~VP~l~d~~~~~~l~eS~~I~~yL~~~y~~ 268 (273)
...|+++++++..|.++|++|.++.++.. .+.++|+++||.++||+|+| ++..++||.+|++||+++|+.
T Consensus 16 ~~~cp~~~rv~i~L~ekgi~~e~~~vd~~-~~~~~fl~inP~g~vPvL~~--~g~~l~ES~aI~eYL~e~~~~ 85 (236)
T TIGR00862 16 IGNCPFSQRLFMILWLKGVVFNVTTVDLK-RKPEDLQNLAPGTHPPFLTY--NTEVKTDVNKIEEFLEETLCP 85 (236)
T ss_pred CCCCHhHHHHHHHHHHcCCCcEEEEECCC-CCCHHHHHHCcCCCCCEEEE--CCEEeecHHHHHHHHHHHcCC
Confidence 35799999999999999999999998754 35689999999999999998 468999999999999999975
No 104
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=99.02 E-value=9.5e-10 Score=94.23 Aligned_cols=74 Identities=16% Similarity=0.293 Sum_probs=62.8
Q ss_pred hhhhccCCchHHHHHHHHHhcCCceEEEEcCCCCCCchhHHhhcCCCcccEEEcCCCCeeeccHHHHHHHHHhhcCC
Q 024026 192 ELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSYSA 268 (273)
Q Consensus 192 ~ly~~~~s~~~~~v~~~L~e~gi~y~~~~v~~~~~~~~~~~~~~~~~~VP~l~d~~~~~~l~eS~~I~~yL~~~y~~ 268 (273)
++|....||+|++++..|.++|++|+.+++..+.+. ..+++||.++||+|+.+ ++..++||.+|++||+++|+.
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~~~~--~~~~~np~g~vP~l~~~-~g~~l~es~~I~~yL~~~~~~ 74 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNIPVEKHVLLNDDEE--TPIRMIGAKQVPILQKD-DGRAMPESLDIVAYFDKLDGE 74 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCCCeEEEECCCCcch--hHHHhcCCCCcceEEee-CCeEeccHHHHHHHHHHhCCC
Confidence 467888999999999999999999999887655433 34889999999999832 467899999999999999975
No 105
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=99.02 E-value=1.8e-09 Score=76.95 Aligned_cols=73 Identities=12% Similarity=0.234 Sum_probs=58.0
Q ss_pred ceEEEecCCCchHHHHHHHHHHcCCceEEEECCCCChhhHHHHHHhC-CCCcccEEEeCCCCccccC--hHHHHHHHH
Q 024026 69 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLG-GKEQFPFLIDPNTGVSMYE--SGDIVNYLF 143 (273)
Q Consensus 69 ~l~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~~~~~~~~~~~~~~-p~~~vP~L~d~~~g~~l~E--S~aI~~YL~ 143 (273)
.++||+.++||+|++++.+|++++++|+.++++.+.. ..++++++| +...||+++.. +|..+.+ +..|..+|.
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~~~~~-~~~~~~~~~~~~~~vP~i~~~-~g~~l~~~~~~~~~~~l~ 76 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEEDEG-AADRVVSVNNGNMTVPTVKFA-DGSFLTNPSAAQVKAKLQ 76 (77)
T ss_pred CEEEEECCCChhHHHHHHHHHHcCCceEEEeCcCCHh-HHHHHHHHhCCCceeCEEEEC-CCeEecCCCHHHHHHHhh
Confidence 3789999999999999999999999999999987643 345555777 89999999753 6766555 556666664
No 106
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=99.01 E-value=7.3e-10 Score=80.92 Aligned_cols=73 Identities=18% Similarity=0.182 Sum_probs=57.3
Q ss_pred hhhhccCCchHHHHHHHHHhcCCceEEEEcCCC--CCC-chhHHhh-----cCCCcccEEEcCCCCeeeccHHHHHHHHH
Q 024026 192 ELFSYENNPYARIVREALCELELPYILQNVGDG--SSR-TKLLVDI-----TGSKEVPYLIDPNTSTQIGDYKKILSYLF 263 (273)
Q Consensus 192 ~ly~~~~s~~~~~v~~~L~e~gi~y~~~~v~~~--~~~-~~~~~~~-----~~~~~VP~l~d~~~~~~l~eS~~I~~yL~ 263 (273)
++|.+..+..+++++..|.++|++|+.+.++.. .+. .+++.+. +|+++||+|+|+ +..++||.||++||.
T Consensus 2 ~l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~~--g~~l~ES~AIl~YLa 79 (82)
T cd03075 2 TLGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYIDG--DVKLTQSNAILRYIA 79 (82)
T ss_pred EEEEeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEEC--CEEEeehHHHHHHHh
Confidence 356677788899999999999999999888532 222 2455432 299999999984 689999999999999
Q ss_pred hhc
Q 024026 264 QSY 266 (273)
Q Consensus 264 ~~y 266 (273)
++|
T Consensus 80 ~~~ 82 (82)
T cd03075 80 RKH 82 (82)
T ss_pred hcC
Confidence 875
No 107
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=99.01 E-value=2.8e-09 Score=78.18 Aligned_cols=76 Identities=20% Similarity=0.354 Sum_probs=63.5
Q ss_pred ceEEEecCCCchHHHHHHHHHH-----cCCceEEEECCCCChhhHHHHHHhCCC--CcccEEEeCCCCccccChHHHHHH
Q 024026 69 RLQLFEFEACPFCRRVREAITE-----LDLSVEVFPCPKGSIRHREMVRRLGGK--EQFPFLIDPNTGVSMYESGDIVNY 141 (273)
Q Consensus 69 ~l~Ly~~~~~p~~~~vr~~L~e-----~~l~~~~~~v~~~~~~~~~~~~~~~p~--~~vP~L~d~~~g~~l~ES~aI~~Y 141 (273)
.+++|+.++||+|.+++.+|++ .|++|+.+++...... .+.+.+..+. .+||++.. +|..+....+|.++
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~-~~el~~~~~~~~~~vP~ifi--~g~~igg~~~~~~~ 78 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGIS-KADLEKTVGKPVETVPQIFV--DQKHIGGCTDFEAY 78 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHH-HHHHHHHHCCCCCcCCEEEE--CCEEEcCHHHHHHH
Confidence 5899999999999999999999 7999999999864322 3334455544 68999986 79999999999999
Q ss_pred HHHHhC
Q 024026 142 LFQQYG 147 (273)
Q Consensus 142 L~~~~~ 147 (273)
+.+.|+
T Consensus 79 ~~~~~~ 84 (85)
T PRK11200 79 VKENLG 84 (85)
T ss_pred HHHhcc
Confidence 999886
No 108
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=99.00 E-value=1.2e-09 Score=79.21 Aligned_cols=70 Identities=14% Similarity=0.199 Sum_probs=57.2
Q ss_pred hhhhccCCchHHHHHHHHHhcCCceEEEEcCCCCCCchhHHhhc-----CCCcccEEEcCCCCeeeccHHHHHHHHHhhc
Q 024026 192 ELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDIT-----GSKEVPYLIDPNTSTQIGDYKKILSYLFQSY 266 (273)
Q Consensus 192 ~ly~~~~s~~~~~v~~~L~e~gi~y~~~~v~~~~~~~~~~~~~~-----~~~~VP~l~d~~~~~~l~eS~~I~~yL~~~y 266 (273)
++|.+..++.++.++..|.+.|++|+.+.++.+ ++|.+.+ +.++||+|++ ++..++||.||++||.++|
T Consensus 3 ~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~----~~~~~~~~~~~~~~g~vP~L~~--~g~~l~ES~AI~~YL~~~~ 76 (79)
T cd03077 3 VLHYFNGRGRMESIRWLLAAAGVEFEEKFIESA----EDLEKLKKDGSLMFQQVPMVEI--DGMKLVQTRAILNYIAGKY 76 (79)
T ss_pred EEEEeCCCChHHHHHHHHHHcCCCcEEEEeccH----HHHHhhccccCCCCCCCCEEEE--CCEEEeeHHHHHHHHHHHc
Confidence 567777888889999999999999999887542 3344443 4899999987 3589999999999999998
Q ss_pred C
Q 024026 267 S 267 (273)
Q Consensus 267 ~ 267 (273)
|
T Consensus 77 ~ 77 (79)
T cd03077 77 N 77 (79)
T ss_pred C
Confidence 7
No 109
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=99.00 E-value=9.3e-10 Score=95.76 Aligned_cols=70 Identities=27% Similarity=0.512 Sum_probs=59.9
Q ss_pred ceEEEecCCCchHHHHHHHHHHcCCceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCccccChHHHHHHHHH
Q 024026 69 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQ 144 (273)
Q Consensus 69 ~l~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~~l~ES~aI~~YL~~ 144 (273)
.++||.|+.||||-|||.+|...||+|+++.|+.- .+... +.+-..+||+|.. +|+.|.||.+|+.-|+.
T Consensus 90 ~l~LyQyetCPFCcKVrAFLDyhgisY~VVEVnpV---~r~eI-k~SsykKVPil~~--~Geqm~dSsvIIs~laT 159 (370)
T KOG3029|consen 90 DLVLYQYETCPFCCKVRAFLDYHGISYAVVEVNPV---LRQEI-KWSSYKKVPILLI--RGEQMVDSSVIISLLAT 159 (370)
T ss_pred eEEEEeeccCchHHHHHHHHhhcCCceEEEEecch---hhhhc-cccccccccEEEe--ccceechhHHHHHHHHH
Confidence 68999999999999999999999999999999742 34444 6677889999986 58889999999988743
No 110
>PLN02395 glutathione S-transferase
Probab=98.99 E-value=1.4e-09 Score=93.13 Aligned_cols=75 Identities=16% Similarity=0.250 Sum_probs=62.7
Q ss_pred hhhhhccCCchHHHHHHHHHhcCCceEEEEcC--CCCCCchhHHhhcCCCcccEEEcCCCCeeeccHHHHHHHHHhhcCC
Q 024026 191 LELFSYENNPYARIVREALCELELPYILQNVG--DGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSYSA 268 (273)
Q Consensus 191 i~ly~~~~s~~~~~v~~~L~e~gi~y~~~~v~--~~~~~~~~~~~~~~~~~VP~l~d~~~~~~l~eS~~I~~yL~~~y~~ 268 (273)
+++|.... ..++++...|.++|++|+.+.++ .+..+.++|+++||.++||+|+|+ +..|+||.+|++||+++|+.
T Consensus 3 ~~ly~~~~-~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~--~~~l~ES~aI~~YL~~~~~~ 79 (215)
T PLN02395 3 LKVYGPAF-ASPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPFGVVPVIVDG--DYKIFESRAIMRYYAEKYRS 79 (215)
T ss_pred EEEEcCCc-CcHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCCCCCCEEEEC--CEEEEcHHHHHHHHHHHcCC
Confidence 46776544 45788899999999999998875 345667899999999999999974 57899999999999999964
No 111
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=7.3e-10 Score=90.53 Aligned_cols=78 Identities=23% Similarity=0.308 Sum_probs=67.3
Q ss_pred hhhhhhccCCchHHHHHHHHHhcCCceEEEEcC--CC-CCCchhHHhhcCCCcccEEEcCCCCeeeccHHHHHHHHHhhc
Q 024026 190 KLELFSYENNPYARIVREALCELELPYILQNVG--DG-SSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSY 266 (273)
Q Consensus 190 ~i~ly~~~~s~~~~~v~~~L~e~gi~y~~~~v~--~~-~~~~~~~~~~~~~~~VP~l~d~~~~~~l~eS~~I~~yL~~~y 266 (273)
...+|++.-+....+||.+|+.+|++|+...|. ++ .+...+|.++||+++||.|++ +|..+.||-||++||+++|
T Consensus 5 KpiLYSYWrSSCswRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i--~g~tl~eS~AII~YLeEt~ 82 (217)
T KOG0868|consen 5 KPILYSYWRSSCSWRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVI--DGLTLTESLAIIEYLEETY 82 (217)
T ss_pred cchhhhhhcccchHHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCchhhCCeEEE--CCEEeehHHHHHHHHHhcC
Confidence 457888888888999999999999999998774 33 444568999999999999998 5799999999999999999
Q ss_pred CCC
Q 024026 267 SAS 269 (273)
Q Consensus 267 ~~~ 269 (273)
++.
T Consensus 83 P~p 85 (217)
T KOG0868|consen 83 PDP 85 (217)
T ss_pred CCC
Confidence 863
No 112
>PHA03050 glutaredoxin; Provisional
Probab=98.98 E-value=3.5e-09 Score=81.41 Aligned_cols=73 Identities=16% Similarity=0.372 Sum_probs=62.1
Q ss_pred CCCceEEEecCCCchHHHHHHHHHHcCC---ceEEEECCCC--ChhhHHHHHHhCCCCcccEEEeCCCCccccChHHHHH
Q 024026 66 SPTRLQLFEFEACPFCRRVREAITELDL---SVEVFPCPKG--SIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVN 140 (273)
Q Consensus 66 ~~~~l~Ly~~~~~p~~~~vr~~L~e~~l---~~~~~~v~~~--~~~~~~~~~~~~p~~~vP~L~d~~~g~~l~ES~aI~~ 140 (273)
..+++++|+.++||||.+++-+|+++|+ +|+.++++.. ....++.+.+.++..+||.++. +|..|....++.+
T Consensus 11 ~~~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI--~g~~iGG~ddl~~ 88 (108)
T PHA03050 11 ANNKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFF--GKTSIGGYSDLLE 88 (108)
T ss_pred ccCCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE--CCEEEeChHHHHH
Confidence 3468999999999999999999999999 8999999863 2344667778999999999986 6888888888877
No 113
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=1.9e-09 Score=92.77 Aligned_cols=77 Identities=22% Similarity=0.309 Sum_probs=68.6
Q ss_pred hhhhhhhccCCchHHHHHHHHHhcCCceEEEEcCCCCCCchhHHhhc-CCCcccEEEcCCCCeeeccHHHHHHHHHhhcC
Q 024026 189 KKLELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDIT-GSKEVPYLIDPNTSTQIGDYKKILSYLFQSYS 267 (273)
Q Consensus 189 ~~i~ly~~~~s~~~~~v~~~L~e~gi~y~~~~v~~~~~~~~~~~~~~-~~~~VP~l~d~~~~~~l~eS~~I~~yL~~~y~ 267 (273)
..+++|+...||+.++++.+|..+|++|++++.+.. .+.+.+++.| ..++||+|++. +..+.||..|++||+++|.
T Consensus 8 ~~vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~-~Ks~~ll~~np~hkKVPvL~Hn--~k~i~ESliiveYiDe~w~ 84 (231)
T KOG0406|consen 8 GTVKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLT-NKSEWLLEKNPVHKKVPVLEHN--GKPICESLIIVEYIDETWP 84 (231)
T ss_pred CeEEEEEeecChHHHHHHHHHHhcCCceEEEecCCC-CCCHHHHHhccccccCCEEEEC--CceehhhHHHHHHHHhhcc
Confidence 568899999999999999999999999999987653 3788889999 78999999994 5569999999999999998
Q ss_pred C
Q 024026 268 A 268 (273)
Q Consensus 268 ~ 268 (273)
.
T Consensus 85 ~ 85 (231)
T KOG0406|consen 85 S 85 (231)
T ss_pred C
Confidence 4
No 114
>PRK10542 glutathionine S-transferase; Provisional
Probab=98.96 E-value=1.5e-09 Score=91.87 Aligned_cols=75 Identities=21% Similarity=0.193 Sum_probs=60.8
Q ss_pred hhhhccCCchHHHHHHHHHhcCCceEEEEcCC--C-CCCchhHHhhcCCCcccEEEcCCCCeeeccHHHHHHHHHhhcCC
Q 024026 192 ELFSYENNPYARIVREALCELELPYILQNVGD--G-SSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSYSA 268 (273)
Q Consensus 192 ~ly~~~~s~~~~~v~~~L~e~gi~y~~~~v~~--~-~~~~~~~~~~~~~~~VP~l~d~~~~~~l~eS~~I~~yL~~~y~~ 268 (273)
++|....+ .+.++...|.++|++|+.+.++. + ..+.++|.++||.++||+|+++ +|+.|+||.+|++||+++|+.
T Consensus 2 ~l~~~~~s-~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vPvL~~~-~g~~l~eS~aI~~YL~~~~~~ 79 (201)
T PRK10542 2 KLFYKPGA-CSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPKGQVPALLLD-DGTLLTEGVAIMQYLADSVPD 79 (201)
T ss_pred ceeecccH-HHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcCCCCCeEEeC-CCcEeecHHHHHHHHHHhCcc
Confidence 56665555 46778899999999999988753 2 2345789999999999999853 468899999999999999974
No 115
>PLN02907 glutamate-tRNA ligase
Probab=98.96 E-value=3.1e-09 Score=105.85 Aligned_cols=83 Identities=14% Similarity=0.138 Sum_probs=70.2
Q ss_pred eEEEecCCCchHHHHHHHHHHcCCceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCccccChHHHHHHHHHHhCCC
Q 024026 70 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYGKG 149 (273)
Q Consensus 70 l~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~~l~ES~aI~~YL~~~~~~~ 149 (273)
++||..+.++ +.++.++|+++|++|+.+. .+|.++||+|+++ +|..|+||.||++||+++|+..
T Consensus 3 ~kLy~~~~S~-~~~v~~~L~~lgv~~e~~~--------------~~p~GkVPvLv~d-dG~~L~ES~AIl~YLa~~~p~~ 66 (722)
T PLN02907 3 AKLSFPPDSP-PLAVIAAAKVAGVPLTIDP--------------SLKSGSAPTLLFS-SGEKLTGTNVLLRYIARSASLP 66 (722)
T ss_pred EEEEECCCCC-hHHHHHHHHHcCCCcEEee--------------cCCCCCCcEEEEC-CCCEEECHHHHHHHHHHhCCCc
Confidence 7899887654 6679999999999999864 2589999999963 7899999999999999999765
Q ss_pred CCCCCChhHHHHHHhhhhh
Q 024026 150 RSPSTGLLESTLITGWMPT 168 (273)
Q Consensus 150 ~~~~~~~~~~~~~~~wl~~ 168 (273)
.+.+.++.+++++.+|+.+
T Consensus 67 ~L~p~d~~erAqV~qWL~~ 85 (722)
T PLN02907 67 GFYGQDAFESSQVDEWLDY 85 (722)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 5556678899999999983
No 116
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.96 E-value=4.7e-09 Score=76.53 Aligned_cols=71 Identities=18% Similarity=0.345 Sum_probs=52.9
Q ss_pred ceEEEecCCCchHHHHHHHHHHcCCceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCccccChHHHHHH
Q 024026 69 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNY 141 (273)
Q Consensus 69 ~l~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~~l~ES~aI~~Y 141 (273)
+++||+.++||+|.+++.+|+++||+|+.++++... ...+++ +.+|..+||+|+..+.-..=|....|-+.
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~-~~~~~~-~~~g~~~vPvv~i~~~~~~Gf~~~~l~~~ 72 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVP-EAAETL-RAQGFRQLPVVIAGDLSWSGFRPDMINRL 72 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCH-HHHHHH-HHcCCCCcCEEEECCEEEecCCHHHHHHH
Confidence 589999999999999999999999999999998653 334445 44689999999973111223444444443
No 117
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.95 E-value=3.2e-09 Score=74.49 Aligned_cols=63 Identities=14% Similarity=0.381 Sum_probs=51.7
Q ss_pred ceEEEecCCCchHHHHHHHHHHcCCceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCccccC
Q 024026 69 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYE 134 (273)
Q Consensus 69 ~l~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~~l~E 134 (273)
.+++|+.++||+|++++.+|.+++++|..++++.+.. ..+++.++||.++||+|++ +|..+..
T Consensus 1 ~v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~~~-~~~~~~~~~~~~~vP~i~~--~~~~i~g 63 (73)
T cd02976 1 EVTVYTKPDCPYCKATKRFLDERGIPFEEVDVDEDPE-ALEELKKLNGYRSVPVVVI--GDEHLSG 63 (73)
T ss_pred CEEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCCHH-HHHHHHHHcCCcccCEEEE--CCEEEec
Confidence 4789999999999999999999999999999987543 3444568899999999997 4554433
No 118
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.94 E-value=4.4e-09 Score=75.91 Aligned_cols=72 Identities=13% Similarity=0.302 Sum_probs=60.2
Q ss_pred eEEEecCCCchHHHHHHHHHHcCCceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCccccChHHHHHHHHH
Q 024026 70 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQ 144 (273)
Q Consensus 70 l~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~~l~ES~aI~~YL~~ 144 (273)
++||+.++||+|.+++.+|+++|++|+.++++.... ..+.+.+.++...||+++. +|..+....++..+-.+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~~-~~~~~~~~~g~~~vP~i~i--~g~~igg~~~~~~~~~~ 72 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGDPA-LRDEMMQRSGRRTVPQIFI--GDVHVGGCDDLYALDRE 72 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEEecCCHH-HHHHHHHHhCCCCcCEEEE--CCEEEcChHHHHHHHHc
Confidence 579999999999999999999999999999986543 3344557778999999986 78889888888877544
No 119
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.93 E-value=4.4e-09 Score=74.96 Aligned_cols=66 Identities=17% Similarity=0.147 Sum_probs=56.2
Q ss_pred ccCCchHHHHHHHHHhcCCceEEEEcCCCC-CCchhHHhhcCCCcccEEEcCCCCeeeccHHHHHHHHH
Q 024026 196 YENNPYARIVREALCELELPYILQNVGDGS-SRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLF 263 (273)
Q Consensus 196 ~~~s~~~~~v~~~L~e~gi~y~~~~v~~~~-~~~~~~~~~~~~~~VP~l~d~~~~~~l~eS~~I~~yL~ 263 (273)
...++++++++..|.++|++|..+.+.... ++.++|.++||.++||+|+++ +..++||.+|++||.
T Consensus 7 ~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~~~~~~~~nP~g~vP~L~~~--g~~l~eS~aI~~YL~ 73 (73)
T cd03043 7 KNYSSWSLRPWLLLKAAGIPFEEILVPLYTPDTRARILEFSPTGKVPVLVDG--GIVVWDSLAICEYLA 73 (73)
T ss_pred CCCCHHHHHHHHHHHHcCCCCEEEEeCCCCccccHHHHhhCCCCcCCEEEEC--CEEEEcHHHHHHHhC
Confidence 356889999999999999999998886432 355789999999999999984 578999999999984
No 120
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=98.92 E-value=3.8e-09 Score=72.86 Aligned_cols=70 Identities=30% Similarity=0.394 Sum_probs=59.6
Q ss_pred hhhhccCCchHHHHHHHHHhcCCceEEEEcCCCCCCchhHHhhcCCCcccEEEcCCCCeeeccHHHHHHHHH
Q 024026 192 ELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLF 263 (273)
Q Consensus 192 ~ly~~~~s~~~~~v~~~L~e~gi~y~~~~v~~~~~~~~~~~~~~~~~~VP~l~d~~~~~~l~eS~~I~~yL~ 263 (273)
++|....+++|++++..|..++++|..+.+........++.+.+|.+++|+|+++ +..++||.+|++||+
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~--~~~~~es~~I~~yl~ 71 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGEQEEFLALNPLGKVPVLEDG--GLVLTESLAILEYLA 71 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHhcCCCCCCCEEEEC--CEEEEcHHHHHHHhC
Confidence 4677788999999999999999999999887544333367889999999999985 678999999999984
No 121
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.92 E-value=9.3e-09 Score=77.82 Aligned_cols=74 Identities=18% Similarity=0.291 Sum_probs=61.2
Q ss_pred CCCceEEEecCCCchHHHHHHHHHHcCCceEEEECCCCCh--hhHHHHHHhCCCCcccEEEeCCCCccccChHHHHHH
Q 024026 66 SPTRLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSI--RHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNY 141 (273)
Q Consensus 66 ~~~~l~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~~~~--~~~~~~~~~~p~~~vP~L~d~~~g~~l~ES~aI~~Y 141 (273)
.++++++|+.++||||.+++.+|+++|++|+.++++..+. ...+.+.+.++..+||++.. +|..+...+++...
T Consensus 6 ~~~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi--~g~~iGG~ddl~~l 81 (99)
T TIGR02189 6 SEKAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFV--GGKLVGGLENVMAL 81 (99)
T ss_pred ccCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEE--CCEEEcCHHHHHHH
Confidence 4578999999999999999999999999999999986532 12334556778999999986 78888888888774
No 122
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=98.89 E-value=4.6e-09 Score=89.47 Aligned_cols=74 Identities=24% Similarity=0.289 Sum_probs=64.3
Q ss_pred hhhccCCchHHHHHHHHHhcCCceEEEEcCC---CCCCchhHHhhcCCCcccEEEcCCCCeeeccHHHHHHHHHhhcCC
Q 024026 193 LFSYENNPYARIVREALCELELPYILQNVGD---GSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSYSA 268 (273)
Q Consensus 193 ly~~~~s~~~~~v~~~L~e~gi~y~~~~v~~---~~~~~~~~~~~~~~~~VP~l~d~~~~~~l~eS~~I~~yL~~~y~~ 268 (273)
+|....++++++++..|.++|++|..+.+.. +.++.+++.++||.++||+|++ +|..++||.+|++||+++|+.
T Consensus 2 Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~--~g~~l~ES~aI~~yl~~~~~~ 78 (210)
T TIGR01262 2 LYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQGLVPTLDI--DGEVLTQSLAIIEYLEETYPD 78 (210)
T ss_pred cccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCCCcCCEEEE--CCEEeecHHHHHHHHHHhCCC
Confidence 6767788999999999999999999988864 2345678999999999999998 468999999999999999964
No 123
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.89 E-value=1.3e-08 Score=73.68 Aligned_cols=74 Identities=18% Similarity=0.369 Sum_probs=62.6
Q ss_pred ceEEEecCCCchHHHHHHHHHHcCCceEEEECCCCC--hhhHHHHHHhCCCCcccEEEeCCCCccccChHHHHHHHHH
Q 024026 69 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGS--IRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQ 144 (273)
Q Consensus 69 ~l~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~~~--~~~~~~~~~~~p~~~vP~L~d~~~g~~l~ES~aI~~YL~~ 144 (273)
++++|+.++||+|.+++.+|.+++++|+.++++..+ ....++++++++..++|++.. +|..+.++.+|.++..+
T Consensus 1 ~v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~--~g~~igg~~~~~~~~~~ 76 (82)
T cd03419 1 PVVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFI--GGKFIGGCDDLMALHKS 76 (82)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEE--CCEEEcCHHHHHHHHHc
Confidence 478999999999999999999999999999887543 223455667888899999986 78999999999998654
No 124
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=98.89 E-value=1.4e-08 Score=76.54 Aligned_cols=74 Identities=12% Similarity=0.151 Sum_probs=62.3
Q ss_pred CCCceEEEec-----CCCchHHHHHHHHHHcCCceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCccccChHHHHH
Q 024026 66 SPTRLQLFEF-----EACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVN 140 (273)
Q Consensus 66 ~~~~l~Ly~~-----~~~p~~~~vr~~L~e~~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~~l~ES~aI~~ 140 (273)
.++++.||.. ++||||.+++.+|.++|++|+.+++..+ ...+++++++++..+||.+.. +|..+...+++.+
T Consensus 10 ~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~-~~~~~~l~~~tg~~tvP~vfi--~g~~iGG~ddl~~ 86 (97)
T TIGR00365 10 KENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLED-PEIRQGIKEYSNWPTIPQLYV--KGEFVGGCDIIME 86 (97)
T ss_pred ccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCC-HHHHHHHHHHhCCCCCCEEEE--CCEEEeChHHHHH
Confidence 4568999976 8899999999999999999999999754 445666778889999999986 7888888888877
Q ss_pred HH
Q 024026 141 YL 142 (273)
Q Consensus 141 YL 142 (273)
..
T Consensus 87 l~ 88 (97)
T TIGR00365 87 MY 88 (97)
T ss_pred HH
Confidence 53
No 125
>PRK10357 putative glutathione S-transferase; Provisional
Probab=98.88 E-value=4.9e-09 Score=88.91 Aligned_cols=75 Identities=17% Similarity=0.125 Sum_probs=62.6
Q ss_pred hhhhccCCchHHHHHHHHHhcCCceEEEEcCCCCCCchhHHhhcCCCcccEEEcCCCCeeeccHHHHHHHHHhhcCC
Q 024026 192 ELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSYSA 268 (273)
Q Consensus 192 ~ly~~~~s~~~~~v~~~L~e~gi~y~~~~v~~~~~~~~~~~~~~~~~~VP~l~d~~~~~~l~eS~~I~~yL~~~y~~ 268 (273)
++|+...++.+++++..|.++|++|+.+.+... .+.+++.+.||.++||+|+++ +|..|+||.+|++||+++|+.
T Consensus 2 ~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~-~~~~~~~~~nP~g~vP~L~~~-~g~~l~eS~aI~~yL~~~~~~ 76 (202)
T PRK10357 2 KLIGSYTSPFVRKISILLLEKGITFEFVNELPY-NADNGVAQYNPLGKVPALVTE-EGECWFDSPIIAEYIELLNVA 76 (202)
T ss_pred eeecCCCCchHHHHHHHHHHcCCCCeEEecCCC-CCchhhhhcCCccCCCeEEeC-CCCeeecHHHHHHHHHHhCCC
Confidence 578888899999999999999999999876532 234567778999999999843 457899999999999999854
No 126
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.87 E-value=7.8e-09 Score=73.43 Aligned_cols=54 Identities=17% Similarity=0.406 Sum_probs=46.0
Q ss_pred eEEEecCCCchHHHHHHHHHHcCCceEEEECCCCChhhHHHHHHhCCCCcccEEEe
Q 024026 70 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLID 125 (273)
Q Consensus 70 l~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d 125 (273)
++||+.++||+|++++.+|+++|++|+.++++... ...+.+ +..+..+||+++.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~-~~~~~~-~~~g~~~vP~v~~ 54 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQP-EAIDYV-KAQGFRQVPVIVA 54 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCCCH-HHHHHH-HHcCCcccCEEEE
Confidence 58999999999999999999999999999998654 344555 3457889999997
No 127
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.87 E-value=5.3e-09 Score=71.50 Aligned_cols=59 Identities=20% Similarity=0.476 Sum_probs=50.6
Q ss_pred eEEEecCCCchHHHHHHHHHHcCCceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCcc
Q 024026 70 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVS 131 (273)
Q Consensus 70 l~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~~ 131 (273)
+++|+.++||+|.+++.+|+++|++|+.++++..+ ..++.+++.++..++|++.. +|..
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~-~~~~~l~~~~g~~~~P~v~i--~g~~ 59 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDE-EAREELKELSGVRTVPQVFI--DGKF 59 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSH-HHHHHHHHHHSSSSSSEEEE--TTEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccch-hHHHHHHHHcCCCccCEEEE--CCEE
Confidence 58999999999999999999999999999998764 45566667778999999986 5654
No 128
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=98.85 E-value=9.9e-09 Score=91.20 Aligned_cols=68 Identities=22% Similarity=0.300 Sum_probs=60.6
Q ss_pred CCchHHHHHHHHHhcCCceEEEEcCCCCCCchhHHhhcCCCcccEEEcCCCCeeeccHHHHHHHHHhhcCC
Q 024026 198 NNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSYSA 268 (273)
Q Consensus 198 ~s~~~~~v~~~L~e~gi~y~~~~v~~~~~~~~~~~~~~~~~~VP~l~d~~~~~~l~eS~~I~~yL~~~y~~ 268 (273)
.||++++++..|.++|++|.++.++.. .+.++|+++||.++||+|+++ +..|+||.+|++||+++|+.
T Consensus 72 ~cp~s~rV~i~L~ekgi~ye~~~vdl~-~~~~~fl~iNP~GkVPvL~~d--~~~L~ES~aI~~YL~e~~p~ 139 (265)
T PLN02817 72 DCPFCQRVLLTLEEKHLPYDMKLVDLT-NKPEWFLKISPEGKVPVVKLD--EKWVADSDVITQALEEKYPD 139 (265)
T ss_pred CCcHHHHHHHHHHHcCCCCEEEEeCcC-cCCHHHHhhCCCCCCCEEEEC--CEEEecHHHHHHHHHHHCCC
Confidence 589999999999999999999888653 456789999999999999985 46899999999999999975
No 129
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=98.83 E-value=3e-08 Score=73.66 Aligned_cols=74 Identities=18% Similarity=0.249 Sum_probs=62.8
Q ss_pred CCCceEEEec-----CCCchHHHHHHHHHHcCCceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCccccChHHHHH
Q 024026 66 SPTRLQLFEF-----EACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVN 140 (273)
Q Consensus 66 ~~~~l~Ly~~-----~~~p~~~~vr~~L~e~~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~~l~ES~aI~~ 140 (273)
.++++++|.. ++||||.+++.+|+++|++|+.+++..+ ...++.+.+.++..+||++.. +|..|....++.+
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~-~~~~~~l~~~~g~~tvP~vfi--~g~~iGG~~~l~~ 82 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILED-EEVRQGLKEYSNWPTFPQLYV--NGELVGGCDIVKE 82 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCC-HHHHHHHHHHhCCCCCCEEEE--CCEEEeCHHHHHH
Confidence 3568999976 6999999999999999999999999765 345666778889999999986 7888999988887
Q ss_pred HH
Q 024026 141 YL 142 (273)
Q Consensus 141 YL 142 (273)
..
T Consensus 83 l~ 84 (90)
T cd03028 83 MH 84 (90)
T ss_pred HH
Confidence 54
No 130
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=98.80 E-value=1.3e-08 Score=72.08 Aligned_cols=59 Identities=22% Similarity=0.265 Sum_probs=51.2
Q ss_pred cCCchHHHHHHHHHhcCCceEEEEcCCCCCCchhHHhhcCCCcccEEEcCCCCeeeccHHHHHHHHHhh
Q 024026 197 ENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQS 265 (273)
Q Consensus 197 ~~s~~~~~v~~~L~e~gi~y~~~~v~~~~~~~~~~~~~~~~~~VP~l~d~~~~~~l~eS~~I~~yL~~~ 265 (273)
..+++|++++..|+++|++|..+++... .++|.++||+|+++ +..+.||.+|++||+++
T Consensus 14 s~sp~~~~v~~~L~~~~i~~~~~~~~~~--------~~~p~g~vP~l~~~--g~~l~es~~I~~yL~~~ 72 (72)
T cd03054 14 SLSPECLKVETYLRMAGIPYEVVFSSNP--------WRSPTGKLPFLELN--GEKIADSEKIIEYLKKK 72 (72)
T ss_pred CCCHHHHHHHHHHHhCCCceEEEecCCc--------ccCCCcccCEEEEC--CEEEcCHHHHHHHHhhC
Confidence 3689999999999999999999987542 27899999999984 67899999999999874
No 131
>PTZ00057 glutathione s-transferase; Provisional
Probab=98.76 E-value=1.6e-08 Score=86.18 Aligned_cols=74 Identities=19% Similarity=0.344 Sum_probs=61.5
Q ss_pred hhhhhhccCCchHHHHHHHHHhcCCceEEEEcCCCCCCchhHH--------hhcCCCcccEEEcCCCCeeeccHHHHHHH
Q 024026 190 KLELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLV--------DITGSKEVPYLIDPNTSTQIGDYKKILSY 261 (273)
Q Consensus 190 ~i~ly~~~~s~~~~~v~~~L~e~gi~y~~~~v~~~~~~~~~~~--------~~~~~~~VP~l~d~~~~~~l~eS~~I~~y 261 (273)
.+++|....+..+++++..|.++|++|+.+.++. +. ++++ +.||+++||+|+++ +..|+||.+|++|
T Consensus 4 ~~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~--~~-~~~~~~~~~~~~~~nP~g~vP~L~~~--~~~l~eS~AI~~Y 78 (205)
T PTZ00057 4 EIVLYYFDARGKAELIRLIFAYLGIEYTDKRFGE--NG-DAFIEFKNFKKEKDTPFEQVPILEMD--NIIFAQSQAIVRY 78 (205)
T ss_pred ceEEEecCCCcchHHHHHHHHHcCCCeEEEeccc--cc-hHHHHHHhccccCCCCCCCCCEEEEC--CEEEecHHHHHHH
Confidence 3678888889999999999999999999986632 22 2343 47999999999984 5899999999999
Q ss_pred HHhhcCC
Q 024026 262 LFQSYSA 268 (273)
Q Consensus 262 L~~~y~~ 268 (273)
|+++|+.
T Consensus 79 La~~~~~ 85 (205)
T PTZ00057 79 LSKKYKI 85 (205)
T ss_pred HHHHcCC
Confidence 9999974
No 132
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.74 E-value=6.4e-08 Score=70.11 Aligned_cols=73 Identities=18% Similarity=0.414 Sum_probs=60.7
Q ss_pred eEEEecCCCchHHHHHHHHHHcCCc--eEEEECCCCC--hhhHHHHHHhCCCCcccEEEeCCCCccccChHHHHHHHHH
Q 024026 70 LQLFEFEACPFCRRVREAITELDLS--VEVFPCPKGS--IRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQ 144 (273)
Q Consensus 70 l~Ly~~~~~p~~~~vr~~L~e~~l~--~~~~~v~~~~--~~~~~~~~~~~p~~~vP~L~d~~~g~~l~ES~aI~~YL~~ 144 (273)
+++|+.++||+|++++.+|++++++ |+.++++..+ ....+++.+.++..+||.+.. +|..+.++.+++++..+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i--~g~~igg~~~~~~~~~~ 77 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFI--NGKFIGGCSDLLALYKS 77 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEE--CCEEEcCHHHHHHHHHc
Confidence 4789999999999999999999999 9998887642 233455667788889999986 79999999999988654
No 133
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=98.73 E-value=5.1e-08 Score=69.60 Aligned_cols=58 Identities=21% Similarity=0.331 Sum_probs=49.6
Q ss_pred CCchHHHHHHHHHHcCCceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCccccChHHHHHHHHHH
Q 024026 77 ACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQ 145 (273)
Q Consensus 77 ~~p~~~~vr~~L~e~~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~~l~ES~aI~~YL~~~ 145 (273)
.||+|.++.+.|+..|++|+++.... + ..+|.|++|+|++ +|+.+.+|..|++||.++
T Consensus 15 ~sp~clk~~~~Lr~~~~~~~v~~~~n-----~----~~sp~gkLP~l~~--~~~~i~d~~~Ii~~L~~~ 72 (73)
T cd03078 15 VDPECLAVLAYLKFAGAPLKVVPSNN-----P----WRSPTGKLPALLT--SGTKISGPEKIIEYLRKQ 72 (73)
T ss_pred CCHHHHHHHHHHHcCCCCEEEEecCC-----C----CCCCCCccCEEEE--CCEEecChHHHHHHHHHc
Confidence 47999999999999999999875431 1 3568999999997 689999999999999874
No 134
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=98.71 E-value=6.8e-08 Score=81.06 Aligned_cols=83 Identities=19% Similarity=0.251 Sum_probs=67.9
Q ss_pred CCCchHHHHHHHHHHcCCceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCccccChHHHHHHHHHHhCCCCCCCCC
Q 024026 76 EACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYGKGRSPSTG 155 (273)
Q Consensus 76 ~~~p~~~~vr~~L~e~~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~~l~ES~aI~~YL~~~~~~~~~~~~~ 155 (273)
-.||||+++-+.|.+++++|.+..|+.. +++++++++.|.+++|+|.. ++....||..|.++|.++|+.+..+.-+
T Consensus 19 Gdcpf~qr~~m~L~~k~~~f~vttVd~~--~kp~~f~~~sp~~~~P~l~~--d~~~~tDs~~Ie~~Lee~l~~p~~~~~~ 94 (221)
T KOG1422|consen 19 GDCPFCQRLFMTLELKGVPFKVTTVDLS--RKPEWFLDISPGGKPPVLKF--DEKWVTDSDKIEEFLEEKLPPPKLPTLA 94 (221)
T ss_pred CCChhHHHHHHHHHHcCCCceEEEeecC--CCcHHHHhhCCCCCCCeEEe--CCceeccHHHHHHHHHHhcCCCCCcccC
Confidence 3699999999999999999999988764 35666679999999999997 7899999999999999999876544322
Q ss_pred hhHHHHH
Q 024026 156 LLESTLI 162 (273)
Q Consensus 156 ~~~~~~~ 162 (273)
+.|.+.+
T Consensus 95 ~~E~asa 101 (221)
T KOG1422|consen 95 PPESASA 101 (221)
T ss_pred CHHHHhh
Confidence 3444433
No 135
>PRK10824 glutaredoxin-4; Provisional
Probab=98.54 E-value=5.6e-07 Score=69.77 Aligned_cols=74 Identities=12% Similarity=0.159 Sum_probs=63.0
Q ss_pred CCCceEEEec-----CCCchHHHHHHHHHHcCCceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCccccChHHHHH
Q 024026 66 SPTRLQLFEF-----EACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVN 140 (273)
Q Consensus 66 ~~~~l~Ly~~-----~~~p~~~~vr~~L~e~~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~~l~ES~aI~~ 140 (273)
.++++.+|.. ++||||++++.+|..+|++|..+++..+ ..-++.+++.++..+||.+.. +|..|..++++..
T Consensus 13 ~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d-~~~~~~l~~~sg~~TVPQIFI--~G~~IGG~ddl~~ 89 (115)
T PRK10824 13 AENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQN-PDIRAELPKYANWPTFPQLWV--DGELVGGCDIVIE 89 (115)
T ss_pred hcCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCC-HHHHHHHHHHhCCCCCCeEEE--CCEEEcChHHHHH
Confidence 4568899987 5899999999999999999999998765 345667778999999999986 7999999988887
Q ss_pred HH
Q 024026 141 YL 142 (273)
Q Consensus 141 YL 142 (273)
..
T Consensus 90 l~ 91 (115)
T PRK10824 90 MY 91 (115)
T ss_pred HH
Confidence 53
No 136
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=98.48 E-value=4.9e-07 Score=64.58 Aligned_cols=59 Identities=15% Similarity=0.284 Sum_probs=46.7
Q ss_pred CCchHHHHHHHHHhcCCceEEEEcCCCCCCchhHHhhcCCCcccEEEcCCCCeeeccHHHHHHHHHhh
Q 024026 198 NNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQS 265 (273)
Q Consensus 198 ~s~~~~~v~~~L~e~gi~y~~~~v~~~~~~~~~~~~~~~~~~VP~l~d~~~~~~l~eS~~I~~yL~~~ 265 (273)
..+.|-+++..|.+.|++|+++....+. ..+|.|+||+|++ +|..+.||.+|+.||.++
T Consensus 16 ~~~~~~kv~~~L~elglpye~~~~~~~~-------~~~P~GkVP~L~~--dg~vI~eS~aIl~yL~~~ 74 (74)
T cd03079 16 DNASCLAVQTFLKMCNLPFNVRCRANAE-------FMSPSGKVPFIRV--GNQIVSEFGPIVQFVEAK 74 (74)
T ss_pred CCCCHHHHHHHHHHcCCCcEEEecCCcc-------ccCCCCcccEEEE--CCEEEeCHHHHHHHHhcC
Confidence 4677889999999999999988532211 1456799999998 356899999999999864
No 137
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=98.43 E-value=5.4e-07 Score=65.10 Aligned_cols=74 Identities=20% Similarity=0.350 Sum_probs=62.5
Q ss_pred CchhhhhhhccCCchHHHHHHHHHhcCCceEEEEcCCCCCCchhHHhhcCCCcccEEEcCCCCeeeccHHHHHHHHH
Q 024026 187 PSKKLELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLF 263 (273)
Q Consensus 187 ~~~~i~ly~~~~s~~~~~v~~~L~e~gi~y~~~~v~~~~~~~~~~~~~~~~~~VP~l~d~~~~~~l~eS~~I~~yL~ 263 (273)
....+++|..+.|++|++++..|.+.|++|..+++.... ...++.++++..+||.+.. ++..+.++.+|.+||.
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~~-~~~~~~~~~g~~~vP~i~i--~g~~igG~~~l~~~l~ 79 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGNDA-RGRSLRAVTGATTVPQVFI--GGKLIGGSDELEAYLA 79 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCCh-HHHHHHHHHCCCCcCeEEE--CCEEEcCHHHHHHHhC
Confidence 345688999999999999999999999999999987643 3356777789999999987 3567999999999984
No 138
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=98.35 E-value=2.8e-07 Score=79.71 Aligned_cols=80 Identities=23% Similarity=0.398 Sum_probs=69.6
Q ss_pred CchhhhhhhccCCchHHHHHHHHHhcCCceEEEEcC--CCCCCchhHHhhcCCCcccEEEcCCCCeeeccHHHHHHHHHh
Q 024026 187 PSKKLELFSYENNPYARIVREALCELELPYILQNVG--DGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQ 264 (273)
Q Consensus 187 ~~~~i~ly~~~~s~~~~~v~~~L~e~gi~y~~~~v~--~~~~~~~~~~~~~~~~~VP~l~d~~~~~~l~eS~~I~~yL~~ 264 (273)
+.+.+.+|.++.+=..++|+..+.|+|++|+-..|. .++++.++|+++||.+.||+++++ .-.|.|+..|++|+++
T Consensus 23 ~~e~~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlNp~gevPVl~~g--~~II~d~tqIIdYvEr 100 (325)
T KOG4420|consen 23 PRESLVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLNPGGEVPVLIHG--DNIISDYTQIIDYVER 100 (325)
T ss_pred chhcceeeecCcccccceeeeehhhcccccceeeccCccccccCchheecCCCCCCceEecC--CeecccHHHHHHHHHH
Confidence 344578888888888899999999999999988874 678999999999999999999984 5689999999999999
Q ss_pred hcCC
Q 024026 265 SYSA 268 (273)
Q Consensus 265 ~y~~ 268 (273)
+|-+
T Consensus 101 tf~g 104 (325)
T KOG4420|consen 101 TFTG 104 (325)
T ss_pred hhcc
Confidence 8843
No 139
>PRK10638 glutaredoxin 3; Provisional
Probab=98.29 E-value=1.7e-06 Score=63.04 Aligned_cols=73 Identities=11% Similarity=0.294 Sum_probs=61.9
Q ss_pred hhhhhhccCCchHHHHHHHHHhcCCceEEEEcCCCCCCchhHHhhcCCCcccEEEcCCCCeeeccHHHHHHHHHh
Q 024026 190 KLELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQ 264 (273)
Q Consensus 190 ~i~ly~~~~s~~~~~v~~~L~e~gi~y~~~~v~~~~~~~~~~~~~~~~~~VP~l~d~~~~~~l~eS~~I~~yL~~ 264 (273)
.+++|+...|++|++++..|.+.+++|..+++..+...++++.+++|..+||+++.+ +..+....++.++-.+
T Consensus 3 ~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~~--g~~igG~~~~~~~~~~ 75 (83)
T PRK10638 3 NVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFID--AQHIGGCDDLYALDAR 75 (83)
T ss_pred cEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEEC--CEEEeCHHHHHHHHHc
Confidence 467889999999999999999999999999997665556788899999999999773 5678888888886543
No 140
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=98.26 E-value=2.9e-06 Score=59.93 Aligned_cols=71 Identities=23% Similarity=0.348 Sum_probs=58.9
Q ss_pred hhhhhhccCCchHHHHHHHHHhcCCceEEEEcCCCCCCchhHHhhcCCCcccEEEcCCCCeeeccHHHHHHHHH
Q 024026 190 KLELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLF 263 (273)
Q Consensus 190 ~i~ly~~~~s~~~~~v~~~L~e~gi~y~~~~v~~~~~~~~~~~~~~~~~~VP~l~d~~~~~~l~eS~~I~~yL~ 263 (273)
.+.+|+...|++|.+++..|.+.+++|..+++..+. ...++.++.+..+||.+..+ +..+.++.+|.+||+
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~-~~~~~~~~~g~~~vP~ifi~--g~~igg~~~l~~~l~ 72 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEEIPLGKDI-TGRSLRAVTGAMTVPQVFID--GELIGGSDDLEKYFA 72 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCCh-hHHHHHHHhCCCCcCeEEEC--CEEEeCHHHHHHHhC
Confidence 456788999999999999999999999999987654 33456667789999998874 567899999999984
No 141
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=98.24 E-value=4.6e-06 Score=72.56 Aligned_cols=73 Identities=22% Similarity=0.450 Sum_probs=62.1
Q ss_pred CCceEEEecC-------CCchHHHHHHHHHHcCCceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCccccChHHHH
Q 024026 67 PTRLQLFEFE-------ACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIV 139 (273)
Q Consensus 67 ~~~l~Ly~~~-------~~p~~~~vr~~L~e~~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~~l~ES~aI~ 139 (273)
+.-+-||.|+ .||||.||..+|...+||||.+++.. +..+.+|++|.++- +|..+.+|.-|+
T Consensus 43 kD~VYLyQF~R~~~~PnLSPfClKvEt~lR~~~IpYE~~~~~~---------~~rSr~G~lPFIEL--NGe~iaDS~~I~ 111 (281)
T KOG4244|consen 43 KDTVYLYQFPRTKTCPNLSPFCLKVETFLRAYDIPYEIVDCSL---------KRRSRNGTLPFIEL--NGEHIADSDLIE 111 (281)
T ss_pred cCeEEEEeccccCCCCCCChHHHHHHHHHHHhCCCceeccccc---------eeeccCCCcceEEe--CCeeccccHHHH
Confidence 3456799987 58999999999999999999987642 24567899999996 899999999999
Q ss_pred HHHHHHhCCCC
Q 024026 140 NYLFQQYGKGR 150 (273)
Q Consensus 140 ~YL~~~~~~~~ 150 (273)
.+|.++|+-..
T Consensus 112 ~~L~~hf~~~~ 122 (281)
T KOG4244|consen 112 DRLRKHFKIPD 122 (281)
T ss_pred HHHHHHcCCCC
Confidence 99999998654
No 142
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=1.9e-06 Score=70.61 Aligned_cols=76 Identities=18% Similarity=0.340 Sum_probs=63.3
Q ss_pred hhhhhccCCchHHHHHHHHHhcCCceEEEEcCCCCCCchhHHhhcCCCcccEEEcCCCCeeeccHHHHHHHHHhhcCCC
Q 024026 191 LELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSYSAS 269 (273)
Q Consensus 191 i~ly~~~~s~~~~~v~~~L~e~gi~y~~~~v~~~~~~~~~~~~~~~~~~VP~l~d~~~~~~l~eS~~I~~yL~~~y~~~ 269 (273)
+++|.++.||+|.+++.....+++|++++.+..+....+ .++-|..+||+|+-. +|..|.||-+|+.|+++.+|..
T Consensus 1 MkLYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe~Tp--~rmiG~KqVPiL~Ke-dg~~m~ESlDIV~y~d~~~~~~ 76 (215)
T COG2999 1 MKLYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDEETP--IRMIGQKQVPILQKE-DGRAMPESLDIVHYVDELDGKP 76 (215)
T ss_pred CceeEeccChHHHHHHHHhhccCCChhhheeccCcccCh--hhhhcccccceEEcc-ccccchhhhHHHHHHHHhcCch
Confidence 368889999999999999999999999887655433333 778899999999854 5789999999999999999853
No 143
>PTZ00062 glutaredoxin; Provisional
Probab=98.20 E-value=9.9e-06 Score=69.15 Aligned_cols=74 Identities=16% Similarity=0.189 Sum_probs=62.2
Q ss_pred CCCCceEEEec-----CCCchHHHHHHHHHHcCCceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCccccChHHHH
Q 024026 65 DSPTRLQLFEF-----EACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIV 139 (273)
Q Consensus 65 ~~~~~l~Ly~~-----~~~p~~~~vr~~L~e~~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~~l~ES~aI~ 139 (273)
...+++.||.. +.||||++++.+|+++|++|+.+++..++ ..++.+++.++..+||.+.. +|..|...+.+.
T Consensus 110 i~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~-~~~~~l~~~sg~~TvPqVfI--~G~~IGG~d~l~ 186 (204)
T PTZ00062 110 IRNHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDP-DLREELKVYSNWPTYPQLYV--NGELIGGHDIIK 186 (204)
T ss_pred HhcCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCCH-HHHHHHHHHhCCCCCCeEEE--CCEEEcChHHHH
Confidence 34578999977 68999999999999999999999998653 45667778888999999986 788888888777
Q ss_pred HH
Q 024026 140 NY 141 (273)
Q Consensus 140 ~Y 141 (273)
+.
T Consensus 187 ~l 188 (204)
T PTZ00062 187 EL 188 (204)
T ss_pred HH
Confidence 64
No 144
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=1.5e-05 Score=60.63 Aligned_cols=75 Identities=19% Similarity=0.424 Sum_probs=63.3
Q ss_pred CCCCceEEEecCCCchHHHHHHHHHHcCCceEEEECCCCCh--hhHHHHHHhCCCCcccEEEeCCCCccccChHHHHHH
Q 024026 65 DSPTRLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSI--RHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNY 141 (273)
Q Consensus 65 ~~~~~l~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~~~~--~~~~~~~~~~p~~~vP~L~d~~~g~~l~ES~aI~~Y 141 (273)
..++++.+|+..+||+|.+++.+|..+++.+.++.++..+. .-.+.+.++.+..+||.+.. +|..+..+.++..+
T Consensus 11 i~~~~VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI--~Gk~iGG~~dl~~l 87 (104)
T KOG1752|consen 11 ISENPVVIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI--GGKFIGGASDLMAL 87 (104)
T ss_pred hhcCCEEEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE--CCEEEcCHHHHHHH
Confidence 34678999999999999999999999999999999876532 33455667888999999986 79989999998876
No 145
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.17 E-value=3.3e-06 Score=58.96 Aligned_cols=73 Identities=15% Similarity=0.180 Sum_probs=58.9
Q ss_pred hhhhhccCCchHHHHHHHHHhcCCceEEEEcCCCCCCchhHHhhcCCCcccEEEcCCCCeeeccHHHHHHHHH
Q 024026 191 LELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLF 263 (273)
Q Consensus 191 i~ly~~~~s~~~~~v~~~L~e~gi~y~~~~v~~~~~~~~~~~~~~~~~~VP~l~d~~~~~~l~eS~~I~~yL~ 263 (273)
+++|....|+.|+.++..|.+.+++|..+++..+.+..+++.+.++...||+++.++..+.-+++.+|.+||+
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~~~~~~g~~~~~i~~~i~ 74 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIGHKIIVGFDPEKLDQLLE 74 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEECCEEEeeCCHHHHHHHhC
Confidence 5678889999999999999999999999998766555677888899999999987532222278888888763
No 146
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=98.13 E-value=9.7e-06 Score=76.44 Aligned_cols=70 Identities=11% Similarity=0.284 Sum_probs=55.0
Q ss_pred CceEEEecCCCchHHHHHHHHHHcCCceEEEECCCCChhhHHHHHHh--------CCCCcccEEEeCCCCccccChHHHH
Q 024026 68 TRLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRL--------GGKEQFPFLIDPNTGVSMYESGDIV 139 (273)
Q Consensus 68 ~~l~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~~~~~~~~~~~~~--------~p~~~vP~L~d~~~g~~l~ES~aI~ 139 (273)
+.+++|+.++||+|.+++.+|+++||+|+.++++++. ...+...++ .+..+||+++. +|..+..-.++.
T Consensus 2 ~~V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~~~~-~~~~~~~~~~~~~~~~~~g~~tvP~ifi--~~~~igGf~~l~ 78 (410)
T PRK12759 2 VEVRIYTKTNCPFCDLAKSWFGANDIPFTQISLDDDV-KRAEFYAEVNKNILLVEEHIRTVPQIFV--GDVHIGGYDNLM 78 (410)
T ss_pred CcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCh-hHHHHHHHHhhccccccCCCCccCeEEE--CCEEEeCchHHH
Confidence 3689999999999999999999999999999998553 223333232 46789999986 677777777776
Q ss_pred H
Q 024026 140 N 140 (273)
Q Consensus 140 ~ 140 (273)
.
T Consensus 79 ~ 79 (410)
T PRK12759 79 A 79 (410)
T ss_pred H
Confidence 5
No 147
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=98.11 E-value=1.8e-05 Score=64.05 Aligned_cols=70 Identities=19% Similarity=0.299 Sum_probs=56.9
Q ss_pred ceEEEecC------CCchHHHHHHHHHHcCCceEEEECCCCChhhHHHHHHhCCC----CcccEEEeCCCCccccChHHH
Q 024026 69 RLQLFEFE------ACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGK----EQFPFLIDPNTGVSMYESGDI 138 (273)
Q Consensus 69 ~l~Ly~~~------~~p~~~~vr~~L~e~~l~~~~~~v~~~~~~~~~~~~~~~p~----~~vP~L~d~~~g~~l~ES~aI 138 (273)
.++||+.. .||+|.+|+.+|+.++|+|+.++|+.+. ...+++++..+. .+||.+.. +|..|....++
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~-~~~~EL~~~~g~~~~~~tvPqVFI--~G~~IGG~del 77 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDS-GFREELRELLGAELKAVSLPRVFV--DGRYLGGAEEV 77 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCH-HHHHHHHHHhCCCCCCCCCCEEEE--CCEEEecHHHH
Confidence 36799988 8999999999999999999999998653 334456566554 79999986 78888888888
Q ss_pred HHH
Q 024026 139 VNY 141 (273)
Q Consensus 139 ~~Y 141 (273)
.+.
T Consensus 78 ~~L 80 (147)
T cd03031 78 LRL 80 (147)
T ss_pred HHH
Confidence 774
No 148
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.02 E-value=1.3e-05 Score=58.25 Aligned_cols=76 Identities=12% Similarity=0.110 Sum_probs=60.2
Q ss_pred hhhhhhccCCchHHHHHHHHHhcCCceEEEEcCCCCCCchhHHhhcCCCcccEEEcCCCCeeeccHHHHHHHHHhhc
Q 024026 190 KLELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSY 266 (273)
Q Consensus 190 ~i~ly~~~~s~~~~~v~~~L~e~gi~y~~~~v~~~~~~~~~~~~~~~~~~VP~l~d~~~~~~l~eS~~I~~yL~~~y 266 (273)
.+++|+...|++|..++..|.++|++|..+++..+.....++ ...|..+||+++.++..+.-|+...|.+......
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~-~~~g~~~vPvv~i~~~~~~Gf~~~~l~~~~~~~~ 77 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVPEAAETL-RAQGFRQLPVVIAGDLSWSGFRPDMINRLHPAPH 77 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCHHHHHHH-HHcCCCCcCEEEECCEEEecCCHHHHHHHHHhhh
Confidence 356888999999999999999999999999987654333333 4468899999988765566788899988776543
No 149
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.00 E-value=9.8e-06 Score=56.42 Aligned_cols=71 Identities=15% Similarity=0.275 Sum_probs=54.6
Q ss_pred hhhhhccCCchHHHHHHHHHhcCCceEEEEcCCCCCCchhHHhhcCCCcccEEEcCCCCeeeccHHHHHHH
Q 024026 191 LELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSY 261 (273)
Q Consensus 191 i~ly~~~~s~~~~~v~~~L~e~gi~y~~~~v~~~~~~~~~~~~~~~~~~VP~l~d~~~~~~l~eS~~I~~y 261 (273)
+++|....|+.|..+...|.+.+++|...+++.+....+++.++++..+||++++++..+.-++...|.+.
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~~~~~i~g~~~~~l~~~ 72 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDERGIPFEEVDVDEDPEALEELKKLNGYRSVPVVVIGDEHLSGFRPDKLRAL 72 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEECCEEEecCCHHHHHhh
Confidence 35677888999999999999999999999987655555678888899999999986543333455555443
No 150
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=97.99 E-value=1.5e-05 Score=56.40 Aligned_cols=68 Identities=26% Similarity=0.281 Sum_probs=56.8
Q ss_pred hhhhhccCCchHHHHHHHHHhcCCceEEEEcCCCCCCchhHHhhcCCCcccEEEcCCCCeeeccHHHHHH
Q 024026 191 LELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILS 260 (273)
Q Consensus 191 i~ly~~~~s~~~~~v~~~L~e~gi~y~~~~v~~~~~~~~~~~~~~~~~~VP~l~d~~~~~~l~eS~~I~~ 260 (273)
+++|....|++|++++..|.++|++|..+++..+...++++.++++...||.+..+ +..+....++.+
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i~--~~~iGg~~~~~~ 70 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGSSVVPQIFFN--EKLVGGLTDLKS 70 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCcCEEEEC--CEEEeCHHHHHh
Confidence 56788899999999999999999999999998776677889999999999998774 345666665554
No 151
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=97.92 E-value=2.4e-05 Score=54.11 Aligned_cols=69 Identities=19% Similarity=0.346 Sum_probs=57.9
Q ss_pred hhhhhccCCchHHHHHHHHHhcCCceEEEEcCCCCCCchhHHhhcCCCcccEEEcCCCCeeeccHHHHHHH
Q 024026 191 LELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSY 261 (273)
Q Consensus 191 i~ly~~~~s~~~~~v~~~L~e~gi~y~~~~v~~~~~~~~~~~~~~~~~~VP~l~d~~~~~~l~eS~~I~~y 261 (273)
+.+|....|++|+.++..|.+++++|...++..+....+++.++++..++|++.. ++..+.++..|.+.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~--~~~~igg~~~~~~~ 70 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSGWPTVPQIFI--NGEFIGGYDDLKAL 70 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEEecHHHHHHh
Confidence 4578888999999999999999999999998776555667788899999999987 35678888888764
No 152
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=97.92 E-value=1.2e-05 Score=62.05 Aligned_cols=35 Identities=17% Similarity=0.509 Sum_probs=32.4
Q ss_pred eEEEecCCCchHHHHHHHHHHcCCceEEEECCCCC
Q 024026 70 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGS 104 (273)
Q Consensus 70 l~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~~~ 104 (273)
++||+.++||+|++++.+|++.|++|+.+++....
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~ 35 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIVEEP 35 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEecccCCc
Confidence 58999999999999999999999999999997654
No 153
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=97.87 E-value=4.8e-05 Score=55.52 Aligned_cols=75 Identities=16% Similarity=0.276 Sum_probs=61.0
Q ss_pred hhhhhccCCchHHHHHHHHHh-----cCCceEEEEcCCCCCCchhHHhhcCC--CcccEEEcCCCCeeeccHHHHHHHHH
Q 024026 191 LELFSYENNPYARIVREALCE-----LELPYILQNVGDGSSRTKLLVDITGS--KEVPYLIDPNTSTQIGDYKKILSYLF 263 (273)
Q Consensus 191 i~ly~~~~s~~~~~v~~~L~e-----~gi~y~~~~v~~~~~~~~~~~~~~~~--~~VP~l~d~~~~~~l~eS~~I~~yL~ 263 (273)
+++|....|++|+++...|.+ .+++|..+++.......+++.++.+. ..||.+.. +|..+....+|.+++.
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi--~g~~igg~~~~~~~~~ 80 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFV--DQKHIGGCTDFEAYVK 80 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEE--CCEEEcCHHHHHHHHH
Confidence 567888899999999999998 78999999987544345566666664 68999876 3567899999999999
Q ss_pred hhcC
Q 024026 264 QSYS 267 (273)
Q Consensus 264 ~~y~ 267 (273)
+.|+
T Consensus 81 ~~~~ 84 (85)
T PRK11200 81 ENLG 84 (85)
T ss_pred Hhcc
Confidence 9886
No 154
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=3.2e-05 Score=66.04 Aligned_cols=75 Identities=15% Similarity=0.155 Sum_probs=59.0
Q ss_pred hhhhhccCCchHHHHHHHHHhcCCceEEEEcCCCCCCchhHHhhcCCCcccEEEcCCCCeeeccHHHHHHHHHhhcCC
Q 024026 191 LELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSYSA 268 (273)
Q Consensus 191 i~ly~~~~s~~~~~v~~~L~e~gi~y~~~~v~~~~~~~~~~~~~~~~~~VP~l~d~~~~~~l~eS~~I~~yL~~~y~~ 268 (273)
.+++.+.....+..+|..+...|++|+-+.+..+.. -..+....|++|+|+|..+ |..|.+|.+|++||+++||-
T Consensus 4 ykL~Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~~~-w~~~K~~~pfgqlP~l~vD--g~~i~QS~AI~RyLArk~gl 78 (206)
T KOG1695|consen 4 YKLTYFNIRGLAEPIRLLFAYAGVSFEDKRITMEDA-WEELKDKMPFGQLPVLEVD--GKKLVQSRAILRYLARKFGL 78 (206)
T ss_pred eEEEecCcchhHHHHHHHHHhcCCCcceeeeccccc-hhhhcccCCCCCCCEEeEC--CEeeccHHHHHHHHHHHhCc
Confidence 356667778888889999999999999888765432 1222334799999999773 78999999999999999974
No 155
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=97.84 E-value=6e-05 Score=53.65 Aligned_cols=59 Identities=20% Similarity=0.206 Sum_probs=48.0
Q ss_pred cCCchHHHHHHHHHhcCCceEEEEcCCCCCCchhHHhhcCCCcccEEEcCCCCeeeccHHHHHHHHHhh
Q 024026 197 ENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQS 265 (273)
Q Consensus 197 ~~s~~~~~v~~~L~e~gi~y~~~~v~~~~~~~~~~~~~~~~~~VP~l~d~~~~~~l~eS~~I~~yL~~~ 265 (273)
..+++|-+++..|+-.+++|.++.... ...+|.+++|+|+++ +..+.+|..|++||.++
T Consensus 14 s~sp~clk~~~~Lr~~~~~~~v~~~~n--------~~~sp~gkLP~l~~~--~~~i~d~~~Ii~~L~~~ 72 (73)
T cd03078 14 SVDPECLAVLAYLKFAGAPLKVVPSNN--------PWRSPTGKLPALLTS--GTKISGPEKIIEYLRKQ 72 (73)
T ss_pred cCCHHHHHHHHHHHcCCCCEEEEecCC--------CCCCCCCccCEEEEC--CEEecChHHHHHHHHHc
Confidence 467999999999999999998864221 134589999999984 67899999999999875
No 156
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=97.82 E-value=4.3e-05 Score=54.02 Aligned_cols=72 Identities=13% Similarity=0.209 Sum_probs=56.2
Q ss_pred hhhhhccCCchHHHHHHHHHhcCCceEEEEcCCCCCCchhHHhhc-CCCcccEEEcCCCCeee--ccHHHHHHHHH
Q 024026 191 LELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDIT-GSKEVPYLIDPNTSTQI--GDYKKILSYLF 263 (273)
Q Consensus 191 i~ly~~~~s~~~~~v~~~L~e~gi~y~~~~v~~~~~~~~~~~~~~-~~~~VP~l~d~~~~~~l--~eS~~I~~yL~ 263 (273)
+++|....|+.|++++..|.+.+++|..+++..+....+.+.+++ +...||+++.++ +..+ ..+..|.++|.
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i~~~~-g~~l~~~~~~~~~~~l~ 76 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEEDEGAADRVVSVNNGNMTVPTVKFAD-GSFLTNPSAAQVKAKLQ 76 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcCCceEEEeCcCCHhHHHHHHHHhCCCceeCEEEECC-CeEecCCCHHHHHHHhh
Confidence 456788899999999999999999999999877655556677787 899999986433 3444 45677777775
No 157
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=97.79 E-value=7.4e-05 Score=51.69 Aligned_cols=58 Identities=17% Similarity=0.416 Sum_probs=44.1
Q ss_pred ceEEEecCCCchHHHHHHHHHHc-----CCceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCcccc
Q 024026 69 RLQLFEFEACPFCRRVREAITEL-----DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMY 133 (273)
Q Consensus 69 ~l~Ly~~~~~p~~~~vr~~L~e~-----~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~~l~ 133 (273)
.+++|+.++||+|.+++.+|+++ ++++..++++.. ++ +.+..+...+|+++. +|..++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~----~~-l~~~~~i~~vPti~i--~~~~~~ 64 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEF----PD-LADEYGVMSVPAIVI--NGKVEF 64 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccC----Hh-HHHHcCCcccCEEEE--CCEEEE
Confidence 47899999999999999999987 577777776543 23 335666778999986 566554
No 158
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=97.79 E-value=7.7e-05 Score=54.71 Aligned_cols=76 Identities=12% Similarity=0.261 Sum_probs=59.1
Q ss_pred hhhhhccCCchHHHHHHHHHhc-----CCceEEEEcCCCCCCchhHHhhcCC--CcccEEEcCCCCeeeccHHHHHHHHH
Q 024026 191 LELFSYENNPYARIVREALCEL-----ELPYILQNVGDGSSRTKLLVDITGS--KEVPYLIDPNTSTQIGDYKKILSYLF 263 (273)
Q Consensus 191 i~ly~~~~s~~~~~v~~~L~e~-----gi~y~~~~v~~~~~~~~~~~~~~~~--~~VP~l~d~~~~~~l~eS~~I~~yL~ 263 (273)
+.+|+.+.||+|.++...|.+. +++|..+++......++++.++.+. ..||.+..+ +..+.++.+|.+|+.
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi~--g~~igG~~dl~~~~~ 79 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFVD--EKHVGGCTDFEQLVK 79 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEEC--CEEecCHHHHHHHHH
Confidence 3567888999999999999887 4678888876433334567677665 789998763 567999999999999
Q ss_pred hhcCC
Q 024026 264 QSYSA 268 (273)
Q Consensus 264 ~~y~~ 268 (273)
++|+-
T Consensus 80 ~~~~~ 84 (86)
T TIGR02183 80 ENFDI 84 (86)
T ss_pred hcccc
Confidence 98763
No 159
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=97.77 E-value=4.8e-05 Score=60.45 Aligned_cols=36 Identities=19% Similarity=0.353 Sum_probs=33.1
Q ss_pred ceEEEecCCCchHHHHHHHHHHcCCceEEEECCCCC
Q 024026 69 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGS 104 (273)
Q Consensus 69 ~l~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~~~ 104 (273)
|++||+.++||+|++++.+|++.||+|+.+++....
T Consensus 1 mi~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~~~~ 36 (131)
T PRK01655 1 MVTLFTSPSCTSCRKAKAWLEEHDIPFTERNIFSSP 36 (131)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCCcEEeeccCCh
Confidence 589999999999999999999999999999996554
No 160
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=97.77 E-value=6.2e-05 Score=53.19 Aligned_cols=71 Identities=17% Similarity=0.314 Sum_probs=56.8
Q ss_pred hhhhhccCCchHHHHHHHHHhcCCceEEEEcCCCCCCchhHHhhcCCC-cccEEEcCCCCeeeccHHHHHHHHH
Q 024026 191 LELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSK-EVPYLIDPNTSTQIGDYKKILSYLF 263 (273)
Q Consensus 191 i~ly~~~~s~~~~~v~~~L~e~gi~y~~~~v~~~~~~~~~~~~~~~~~-~VP~l~d~~~~~~l~eS~~I~~yL~ 263 (273)
+++|..+.|++|..++..|.+.+++|..+++.......+++.+..+.. .||+++.+ +..+.+..++.++..
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~--g~~igg~~~~~~~~~ 73 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFIG--DVHIGGCDDLYALER 73 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEEC--CEEEeChHHHHHHHh
Confidence 457888899999999999999999999999976544445666766665 99998874 457788888888654
No 161
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=97.76 E-value=5.9e-05 Score=53.26 Aligned_cols=68 Identities=16% Similarity=0.226 Sum_probs=51.5
Q ss_pred hhhhccCCchHHHHHHHHHhcCCceEEEEcCCCCCCchhHHhhcCCCcccEEEcCCC-CeeeccHHHHHH
Q 024026 192 ELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNT-STQIGDYKKILS 260 (273)
Q Consensus 192 ~ly~~~~s~~~~~v~~~L~e~gi~y~~~~v~~~~~~~~~~~~~~~~~~VP~l~d~~~-~~~l~eS~~I~~ 260 (273)
++|....|++|++++..|.++|++|..+++..+....+++ +..+...||+++.++. -+.-|+...|.+
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~~~~-~~~g~~~vP~v~~~g~~~~~G~~~~~~~~ 70 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQPEAIDYV-KAQGFRQVPVIVADGDLSWSGFRPDKLKA 70 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHHCCCceEEEECCCCHHHHHHH-HHcCCcccCEEEECCCcEEeccCHHHHHh
Confidence 5688889999999999999999999999997654333444 4458889999887433 345577776654
No 162
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=97.73 E-value=7.4e-05 Score=53.55 Aligned_cols=71 Identities=11% Similarity=0.254 Sum_probs=58.6
Q ss_pred hhhhccCCchHHHHHHHHHhcCCceEEEEcCCCCCCchhHHhhcCCCcccEEEcCCCCeeeccHHHHHHHHHh
Q 024026 192 ELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQ 264 (273)
Q Consensus 192 ~ly~~~~s~~~~~v~~~L~e~gi~y~~~~v~~~~~~~~~~~~~~~~~~VP~l~d~~~~~~l~eS~~I~~yL~~ 264 (273)
++|..+.|++|..++..|.+.+++|..+++.......+++.+..+...||.++.+ +..+....++.++..+
T Consensus 2 ~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i~--g~~igg~~~~~~~~~~ 72 (79)
T TIGR02181 2 TIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFIG--DVHVGGCDDLYALDRE 72 (79)
T ss_pred EEEecCCChhHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEEC--CEEEcChHHHHHHHHc
Confidence 5678889999999999999999999999998665566778888889999998874 4567788887776544
No 163
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=97.73 E-value=7.1e-05 Score=58.02 Aligned_cols=36 Identities=19% Similarity=0.388 Sum_probs=33.0
Q ss_pred ceEEEecCCCchHHHHHHHHHHcCCceEEEECCCCC
Q 024026 69 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGS 104 (273)
Q Consensus 69 ~l~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~~~ 104 (273)
|+++|+.++||+|++++.+|++.|++|+.+++....
T Consensus 1 mi~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~~~~ 36 (115)
T cd03032 1 MIKLYTSPSCSSCRKAKQWLEEHQIPFEERNLFKQP 36 (115)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCceEEEecCCCc
Confidence 589999999999999999999999999999996543
No 164
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=97.68 E-value=8.7e-05 Score=56.46 Aligned_cols=45 Identities=16% Similarity=0.252 Sum_probs=35.9
Q ss_pred eEEEecCCCchHHHHHHHHHHcCCceEEEECCCCChhhHHHHHHhC
Q 024026 70 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLG 115 (273)
Q Consensus 70 l~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~~~~~~~~~~~~~~ 115 (273)
++||+.++||+|++++.+|++.|++|+.+++..... ..+.+.++.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~-~~~~l~~~~ 45 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDYLKEPP-TKEELKELL 45 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEEeeccCCC-CHHHHHHHH
Confidence 579999999999999999999999999999965432 233344443
No 165
>PTZ00062 glutaredoxin; Provisional
Probab=97.64 E-value=0.0019 Score=55.18 Aligned_cols=155 Identities=13% Similarity=0.110 Sum_probs=99.0
Q ss_pred eEEEecCCCchHHHHHHHHHHcCCc---eEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCcc-----ccChHHHHHH
Q 024026 70 LQLFEFEACPFCRRVREAITELDLS---VEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVS-----MYESGDIVNY 141 (273)
Q Consensus 70 l~Ly~~~~~p~~~~vr~~L~e~~l~---~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~~-----l~ES~aI~~Y 141 (273)
+-.+..+|||-|+.+..+|.++--+ +.+..|+.. ..-..||.++-=.+|.. =.+...+..+
T Consensus 21 vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d-----------~~V~~vPtfv~~~~g~~i~r~~G~~~~~~~~~ 89 (204)
T PTZ00062 21 VLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA-----------DANNEYGVFEFYQNSQLINSLEGCNTSTLVSF 89 (204)
T ss_pred EEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc-----------cCcccceEEEEEECCEEEeeeeCCCHHHHHHH
Confidence 3344478999999999988887543 444455432 23447887654335543 3356778888
Q ss_pred HHHHhCCCCCCCCChhHHHHHHhhhhhHHhhcccchhhcccCCCCCchhhhhhh-----ccCCchHHHHHHHHHhcCCce
Q 024026 142 LFQQYGKGRSPSTGLLESTLITGWMPTIFRAGRGMTLWEKARPDPPSKKLELFS-----YENNPYARIVREALCELELPY 216 (273)
Q Consensus 142 L~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~i~ly~-----~~~s~~~~~v~~~L~e~gi~y 216 (273)
+.+.++... . ..+..++....... .+-++. .+.|++|+++...|.+.+++|
T Consensus 90 ~~~~~~~~~----~----~~~~~~v~~li~~~----------------~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y 145 (204)
T PTZ00062 90 IRGWAQKGS----S----EDTVEKIERLIRNH----------------KILLFMKGSKTFPFCRFSNAVVNMLNSSGVKY 145 (204)
T ss_pred HHHHcCCCC----H----HHHHHHHHHHHhcC----------------CEEEEEccCCCCCCChhHHHHHHHHHHcCCCE
Confidence 877655321 1 12333333221111 111221 257999999999999999999
Q ss_pred EEEEcCCCCCCchhHHhhcCCCcccEEEcCCCCeeeccHHHHHHH
Q 024026 217 ILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSY 261 (273)
Q Consensus 217 ~~~~v~~~~~~~~~~~~~~~~~~VP~l~d~~~~~~l~eS~~I~~y 261 (273)
...++..+...++.+.+.++...||.+.-+ |..+.....+.+.
T Consensus 146 ~~~DI~~d~~~~~~l~~~sg~~TvPqVfI~--G~~IGG~d~l~~l 188 (204)
T PTZ00062 146 ETYNIFEDPDLREELKVYSNWPTYPQLYVN--GELIGGHDIIKEL 188 (204)
T ss_pred EEEEcCCCHHHHHHHHHHhCCCCCCeEEEC--CEEEcChHHHHHH
Confidence 999998766556677788899999988763 4566676666663
No 166
>PRK12559 transcriptional regulator Spx; Provisional
Probab=97.53 E-value=0.00018 Score=57.21 Aligned_cols=36 Identities=17% Similarity=0.313 Sum_probs=33.1
Q ss_pred ceEEEecCCCchHHHHHHHHHHcCCceEEEECCCCC
Q 024026 69 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGS 104 (273)
Q Consensus 69 ~l~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~~~ 104 (273)
|+++|+.++|+.|++++.+|++.|++|+.+++....
T Consensus 1 mi~iY~~~~C~~crkA~~~L~~~gi~~~~~di~~~~ 36 (131)
T PRK12559 1 MVVLYTTASCASCRKAKAWLEENQIDYTEKNIVSNS 36 (131)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCCeEEEEeeCCc
Confidence 589999999999999999999999999999986554
No 167
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.00024 Score=51.45 Aligned_cols=69 Identities=16% Similarity=0.332 Sum_probs=51.0
Q ss_pred hhhhhccCCchHHHHHHHHHhcCCceEEEEcCCCCC-CchhHHh-hcCCCcccEEEcCCCCeeeccHHHHHHH
Q 024026 191 LELFSYENNPYARIVREALCELELPYILQNVGDGSS-RTKLLVD-ITGSKEVPYLIDPNTSTQIGDYKKILSY 261 (273)
Q Consensus 191 i~ly~~~~s~~~~~v~~~L~e~gi~y~~~~v~~~~~-~~~~~~~-~~~~~~VP~l~d~~~~~~l~eS~~I~~y 261 (273)
+..|+...||+|.++...|..+|++|..+++..+.. .+.++++ .+|..+||+++.++ ..++...++.++
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~--~~igg~~d~~~~ 73 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGG--KHVGGCDDLDAL 73 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECC--EEEeCcccHHHH
Confidence 467888899999999999999999999999876652 3345554 45899999998754 344443444443
No 168
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.00038 Score=49.04 Aligned_cols=62 Identities=18% Similarity=0.373 Sum_probs=47.2
Q ss_pred EEEecCCCchHHHHHHHHHHcCCceEEEECCCCChhhHHHHH-----------HhCCCCcccEEEeCCCCcccc
Q 024026 71 QLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVR-----------RLGGKEQFPFLIDPNTGVSMY 133 (273)
Q Consensus 71 ~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~~~~~~~~~~~-----------~~~p~~~vP~L~d~~~g~~l~ 133 (273)
+||+...||-|....+.|+.++++|+.+++.....+-..|++ +.|+.-.+|+|..+ +|.++.
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~-d~~vVl 77 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTD-DGKVVL 77 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeC-CCcEEE
Confidence 799999999999999999999999999998533222122211 56788899999874 676554
No 169
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=97.47 E-value=0.00025 Score=56.46 Aligned_cols=36 Identities=14% Similarity=0.375 Sum_probs=33.1
Q ss_pred ceEEEecCCCchHHHHHHHHHHcCCceEEEECCCCC
Q 024026 69 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGS 104 (273)
Q Consensus 69 ~l~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~~~ 104 (273)
|+++|+.++|+.|++++.+|++.|++|+.+++....
T Consensus 1 Mi~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~~~~ 36 (132)
T PRK13344 1 MIKIYTISSCTSCKKAKTWLNAHQLSYKEQNLGKEP 36 (132)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECCCCC
Confidence 589999999999999999999999999999987543
No 170
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=97.47 E-value=0.00023 Score=55.30 Aligned_cols=35 Identities=9% Similarity=0.358 Sum_probs=31.9
Q ss_pred eEEEecCCCchHHHHHHHHHHcCCceEEEECCCCC
Q 024026 70 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGS 104 (273)
Q Consensus 70 l~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~~~ 104 (273)
++||+.++||+|++++.+|++.|++|+.+++....
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~ 35 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIGEDG 35 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceEEEecCCCh
Confidence 57999999999999999999999999999986543
No 171
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=97.44 E-value=0.00028 Score=62.02 Aligned_cols=70 Identities=29% Similarity=0.371 Sum_probs=55.5
Q ss_pred hhhhhhhccCCchHHHHHHHHHhcCCceEEEEcCCCCCCchhHHhhcCCCcccEEEcCCCCeeeccHHHHHHHHH
Q 024026 189 KKLELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLF 263 (273)
Q Consensus 189 ~~i~ly~~~~s~~~~~v~~~L~e~gi~y~~~~v~~~~~~~~~~~~~~~~~~VP~l~d~~~~~~l~eS~~I~~yL~ 263 (273)
-.+.+|+++.||+|.+|+..|..+|++|.++.|..-. +.+ ++.+...+||+|... |..|.||..|+.-|+
T Consensus 89 L~l~LyQyetCPFCcKVrAFLDyhgisY~VVEVnpV~-r~e--Ik~SsykKVPil~~~--Geqm~dSsvIIs~la 158 (370)
T KOG3029|consen 89 LDLVLYQYETCPFCCKVRAFLDYHGISYAVVEVNPVL-RQE--IKWSSYKKVPILLIR--GEQMVDSSVIISLLA 158 (370)
T ss_pred ceEEEEeeccCchHHHHHHHHhhcCCceEEEEecchh-hhh--ccccccccccEEEec--cceechhHHHHHHHH
Confidence 3567899999999999999999999999999986421 111 455688999998763 336999999988663
No 172
>PHA03050 glutaredoxin; Provisional
Probab=97.38 E-value=0.00035 Score=53.62 Aligned_cols=70 Identities=23% Similarity=0.427 Sum_probs=56.5
Q ss_pred hhhhhhhccCCchHHHHHHHHHhcCC---ceEEEEcCCCC---CCchhHHhhcCCCcccEEEcCCCCeeeccHHHHHH
Q 024026 189 KKLELFSYENNPYARIVREALCELEL---PYILQNVGDGS---SRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILS 260 (273)
Q Consensus 189 ~~i~ly~~~~s~~~~~v~~~L~e~gi---~y~~~~v~~~~---~~~~~~~~~~~~~~VP~l~d~~~~~~l~eS~~I~~ 260 (273)
..+.+|+...||+|.++...|.+.++ +|.+++++... ..++++.++++...||.+..+ +..+....++.+
T Consensus 13 ~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~--g~~iGG~ddl~~ 88 (108)
T PHA03050 13 NKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFFG--KTSIGGYSDLLE 88 (108)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEEC--CEEEeChHHHHH
Confidence 45778999999999999999999998 89999987532 335678888999999998774 456777777776
No 173
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=97.32 E-value=0.0012 Score=55.91 Aligned_cols=72 Identities=18% Similarity=0.269 Sum_probs=59.5
Q ss_pred CCchHHHHHHHHHhcCCceEEEEcCCCCCCchhHHhhcCCCcccEEEcCCCCeeeccHHHHHHHHHhhcCCCCCC
Q 024026 198 NNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSYSASPSP 272 (273)
Q Consensus 198 ~s~~~~~v~~~L~e~gi~y~~~~v~~~~~~~~~~~~~~~~~~VP~l~d~~~~~~l~eS~~I~~yL~~~y~~~~~~ 272 (273)
.|++|+++-..|.+++++|.+..|+-. .+.++|.++.|.+++|+|..+ +....||..|-++|.++|+....|
T Consensus 20 dcpf~qr~~m~L~~k~~~f~vttVd~~-~kp~~f~~~sp~~~~P~l~~d--~~~~tDs~~Ie~~Lee~l~~p~~~ 91 (221)
T KOG1422|consen 20 DCPFCQRLFMTLELKGVPFKVTTVDLS-RKPEWFLDISPGGKPPVLKFD--EKWVTDSDKIEEFLEEKLPPPKLP 91 (221)
T ss_pred CChhHHHHHHHHHHcCCCceEEEeecC-CCcHHHHhhCCCCCCCeEEeC--CceeccHHHHHHHHHHhcCCCCCc
Confidence 589999999999999999999988642 344567789999999999884 457889999999999999865443
No 174
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=97.22 E-value=0.00064 Score=51.86 Aligned_cols=35 Identities=11% Similarity=0.319 Sum_probs=32.1
Q ss_pred eEEEecCCCchHHHHHHHHHHcCCceEEEECCCCC
Q 024026 70 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGS 104 (273)
Q Consensus 70 l~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~~~ 104 (273)
|++|+.++|+.|++++.+|++.|++|+++++....
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di~~~p 35 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDYRKDG 35 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEecccCC
Confidence 57999999999999999999999999999986543
No 175
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=97.20 E-value=0.00089 Score=50.28 Aligned_cols=64 Identities=13% Similarity=0.173 Sum_probs=51.9
Q ss_pred cCCchHHHHHHHHHhcCCceEEEEcCCCCCCchhHHhhcCCCcccEEEcCCCCeeeccHHHHHHHH
Q 024026 197 ENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYL 262 (273)
Q Consensus 197 ~~s~~~~~v~~~L~e~gi~y~~~~v~~~~~~~~~~~~~~~~~~VP~l~d~~~~~~l~eS~~I~~yL 262 (273)
+.||+|.++...|.+.+++|..+++..+...+.++.++++...||.+..+ +..+....++.+..
T Consensus 25 ~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi~--g~~iGG~ddl~~l~ 88 (97)
T TIGR00365 25 PQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYVK--GEFVGGCDIIMEMY 88 (97)
T ss_pred CCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEEC--CEEEeChHHHHHHH
Confidence 67999999999999999999999997665555667778899999998773 45677777777644
No 176
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=97.20 E-value=0.0014 Score=46.86 Aligned_cols=72 Identities=19% Similarity=0.324 Sum_probs=57.2
Q ss_pred hhhhhccCCchHHHHHHHHHhcCCceEEEEcCCCCCC---chhHHhhcCCCcccEEEcCCCCeeeccHHHHHHHHHh
Q 024026 191 LELFSYENNPYARIVREALCELELPYILQNVGDGSSR---TKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQ 264 (273)
Q Consensus 191 i~ly~~~~s~~~~~v~~~L~e~gi~y~~~~v~~~~~~---~~~~~~~~~~~~VP~l~d~~~~~~l~eS~~I~~yL~~ 264 (273)
+.+|+...||+|..++..|.+.+++|...++...... +.++.++++...+|.+..+ +..+.++..|.++..+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~~--g~~igg~~~~~~~~~~ 76 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFIG--GKFIGGCDDLMALHKS 76 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEEC--CEEEcCHHHHHHHHHc
Confidence 3567788999999999999999999998888754332 2345677888899998773 5678999999998765
No 177
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=97.16 E-value=0.00028 Score=47.81 Aligned_cols=55 Identities=22% Similarity=0.410 Sum_probs=47.2
Q ss_pred hhhhccCCchHHHHHHHHHhcCCceEEEEcCCCCCCchhHHhhcCCCcccEEEcC
Q 024026 192 ELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDP 246 (273)
Q Consensus 192 ~ly~~~~s~~~~~v~~~L~e~gi~y~~~~v~~~~~~~~~~~~~~~~~~VP~l~d~ 246 (273)
.+|+.+.|++|.+++..|.+.|++|..+++......++++.+..+...+|.+..+
T Consensus 2 ~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i~ 56 (60)
T PF00462_consen 2 VVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELSGVRTVPQVFID 56 (60)
T ss_dssp EEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEET
T ss_pred EEEEcCCCcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHcCCCccCEEEEC
Confidence 4677889999999999999999999999998765566777778899999998763
No 178
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=97.16 E-value=0.0016 Score=48.13 Aligned_cols=65 Identities=12% Similarity=0.108 Sum_probs=53.8
Q ss_pred cCCchHHHHHHHHHhcCCceEEEEcCCCCCCchhHHhhcCCCcccEEEcCCCCeeeccHHHHHHHHH
Q 024026 197 ENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLF 263 (273)
Q Consensus 197 ~~s~~~~~v~~~L~e~gi~y~~~~v~~~~~~~~~~~~~~~~~~VP~l~d~~~~~~l~eS~~I~~yL~ 263 (273)
+.|++|.++...|.+.+++|..+++..+...+.++.+.++..+||.+..+ +..+.....+.+...
T Consensus 21 ~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi~--g~~iGG~~~l~~l~~ 85 (90)
T cd03028 21 PRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSNWPTFPQLYVN--GELVGGCDIVKEMHE 85 (90)
T ss_pred CCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEEC--CEEEeCHHHHHHHHH
Confidence 58999999999999999999999997665556677788899999998773 456788888888543
No 179
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=97.13 E-value=0.00093 Score=51.70 Aligned_cols=36 Identities=17% Similarity=0.199 Sum_probs=32.6
Q ss_pred ceEEEecCCCchHHHHHHHHHHcCCceEEEECCCCC
Q 024026 69 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGS 104 (273)
Q Consensus 69 ~l~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~~~ 104 (273)
.++||+.+.|+-|++++.+|++.|++|+++++-...
T Consensus 1 ~i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~~~~p 36 (113)
T cd03033 1 DIIFYEKPGCANNARQKALLEAAGHEVEVRDLLTEP 36 (113)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCCcEEeehhcCC
Confidence 378999999999999999999999999999986543
No 180
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=97.11 E-value=0.0019 Score=48.70 Aligned_cols=72 Identities=15% Similarity=0.265 Sum_probs=55.5
Q ss_pred chhhhhhhccCCchHHHHHHHHHhcCCceEEEEcCCCCCCc---hhHHhhcCCCcccEEEcCCCCeeeccHHHHHHH
Q 024026 188 SKKLELFSYENNPYARIVREALCELELPYILQNVGDGSSRT---KLLVDITGSKEVPYLIDPNTSTQIGDYKKILSY 261 (273)
Q Consensus 188 ~~~i~ly~~~~s~~~~~v~~~L~e~gi~y~~~~v~~~~~~~---~~~~~~~~~~~VP~l~d~~~~~~l~eS~~I~~y 261 (273)
...+.+|+...||+|.++...|.+.+++|..++++...... +++.+.++...||.+..+ +..+....++.+.
T Consensus 7 ~~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~--g~~iGG~ddl~~l 81 (99)
T TIGR02189 7 EKAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVG--GKLVGGLENVMAL 81 (99)
T ss_pred cCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEEC--CEEEcCHHHHHHH
Confidence 34577899999999999999999999999999997654332 235566789999998763 4566677766663
No 181
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=96.98 E-value=0.003 Score=44.76 Aligned_cols=56 Identities=27% Similarity=0.349 Sum_probs=48.2
Q ss_pred CCchHHHHHHHHHHcCCc---eEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCccccChHHHHHHH
Q 024026 77 ACPFCRRVREAITELDLS---VEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYL 142 (273)
Q Consensus 77 ~~p~~~~vr~~L~e~~l~---~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~~l~ES~aI~~YL 142 (273)
-+|.|.++.+.|+..+.+ |+++.... + .++|.+++|+|++ .+|+.+.+-..|++||
T Consensus 13 id~ecLa~~~yl~~~~~~~~~~~vv~s~n-----~----~~Sptg~LP~L~~-~~~~~vsg~~~Iv~yL 71 (72)
T PF10568_consen 13 IDPECLAVIAYLKFAGAPEQQFKVVPSNN-----P----WLSPTGELPALID-SGGTWVSGFRNIVEYL 71 (72)
T ss_pred cCHHHHHHHHHHHhCCCCCceEEEEEcCC-----C----CcCCCCCCCEEEE-CCCcEEECHHHHHHhh
Confidence 378999999999999999 88877642 1 3679999999998 4788999999999998
No 182
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=96.98 E-value=0.002 Score=50.17 Aligned_cols=37 Identities=14% Similarity=0.299 Sum_probs=33.3
Q ss_pred CceEEEecCCCchHHHHHHHHHHcCCceEEEECCCCC
Q 024026 68 TRLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGS 104 (273)
Q Consensus 68 ~~l~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~~~ 104 (273)
.++++|+.+.|.-|++++..|++.||+|+++++-...
T Consensus 1 ~~itiy~~p~C~t~rka~~~L~~~gi~~~~~~y~~~~ 37 (117)
T COG1393 1 MMITIYGNPNCSTCRKALAWLEEHGIEYTFIDYLKTP 37 (117)
T ss_pred CeEEEEeCCCChHHHHHHHHHHHcCCCcEEEEeecCC
Confidence 3789999999999999999999999999999886543
No 183
>PRK10853 putative reductase; Provisional
Probab=96.92 E-value=0.0017 Score=50.66 Aligned_cols=36 Identities=8% Similarity=0.236 Sum_probs=32.7
Q ss_pred ceEEEecCCCchHHHHHHHHHHcCCceEEEECCCCC
Q 024026 69 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGS 104 (273)
Q Consensus 69 ~l~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~~~ 104 (273)
|+++|+.+.|.-|++++-+|++.|++|+++++-+..
T Consensus 1 Mi~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~~k~p 36 (118)
T PRK10853 1 MVTLYGIKNCDTIKKARRWLEAQGIDYRFHDYRVDG 36 (118)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHcCCCcEEeehccCC
Confidence 589999999999999999999999999999986543
No 184
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=96.89 E-value=0.0043 Score=44.26 Aligned_cols=55 Identities=18% Similarity=0.337 Sum_probs=41.6
Q ss_pred eEEEecCCCchHHHH----HHHHHHcCCceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCcccc
Q 024026 70 LQLFEFEACPFCRRV----REAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMY 133 (273)
Q Consensus 70 l~Ly~~~~~p~~~~v----r~~L~e~~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~~l~ 133 (273)
+++|. +|||+|..+ ..+++++|++++++.++. .+.. ...+-..+|+|+- +|..++
T Consensus 3 i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~-----~~~a-~~~~v~~vPti~i--~G~~~~ 61 (76)
T TIGR00412 3 IQIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVTD-----MNEI-LEAGVTATPGVAV--DGELVI 61 (76)
T ss_pred EEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeCC-----HHHH-HHcCCCcCCEEEE--CCEEEE
Confidence 67887 899999998 678888999999988872 1223 3346789999987 675543
No 185
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=96.82 E-value=0.0098 Score=44.25 Aligned_cols=68 Identities=9% Similarity=0.053 Sum_probs=51.1
Q ss_pred eEEEecCCCc------hHHHHHHHHHHcCCceEEEECCCCChhhHHHHHHhCC----CCcccEEEeCCCCccccChHHHH
Q 024026 70 LQLFEFEACP------FCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGG----KEQFPFLIDPNTGVSMYESGDIV 139 (273)
Q Consensus 70 l~Ly~~~~~p------~~~~vr~~L~e~~l~~~~~~v~~~~~~~~~~~~~~~p----~~~vP~L~d~~~g~~l~ES~aI~ 139 (273)
++||....+. .|++|+.+|+.++|+|+.++|..++ ..++++.+..+ ...||.+.. +|..+....++.
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~-~~r~em~~~~~~~~g~~tvPQIFi--~~~~iGg~ddl~ 78 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNE-ENRQWMRENVPNENGKPLPPQIFN--GDEYCGDYEAFF 78 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCH-HHHHHHHHhcCCCCCCCCCCEEEE--CCEEeeCHHHHH
Confidence 5677655432 5899999999999999999998754 34555555543 489998874 788888887776
Q ss_pred H
Q 024026 140 N 140 (273)
Q Consensus 140 ~ 140 (273)
.
T Consensus 79 ~ 79 (92)
T cd03030 79 E 79 (92)
T ss_pred H
Confidence 6
No 186
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=96.79 E-value=0.0029 Score=49.93 Aligned_cols=36 Identities=22% Similarity=0.267 Sum_probs=32.7
Q ss_pred ceEEEecCCCchHHHHHHHHHHcCCceEEEECCCCC
Q 024026 69 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGS 104 (273)
Q Consensus 69 ~l~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~~~ 104 (273)
.++||+.+.|.-|++++..|++.|++|+++++-+..
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~~~p 37 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKASGHDVEVQDILKEP 37 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeccCCC
Confidence 578999999999999999999999999999986543
No 187
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=96.78 E-value=0.0062 Score=43.52 Aligned_cols=71 Identities=25% Similarity=0.428 Sum_probs=54.5
Q ss_pred hhhhccCCchHHHHHHHHHhcCCc--eEEEEcCCCCCCc---hhHHhhcCCCcccEEEcCCCCeeeccHHHHHHHHHh
Q 024026 192 ELFSYENNPYARIVREALCELELP--YILQNVGDGSSRT---KLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQ 264 (273)
Q Consensus 192 ~ly~~~~s~~~~~v~~~L~e~gi~--y~~~~v~~~~~~~---~~~~~~~~~~~VP~l~d~~~~~~l~eS~~I~~yL~~ 264 (273)
.+|....|++|+++...|.+.+++ |...++....... +.+.+..+...+|.+.. ++..+.++..++++..+
T Consensus 2 ~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i--~g~~igg~~~~~~~~~~ 77 (84)
T TIGR02180 2 VVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFI--NGKFIGGCSDLLALYKS 77 (84)
T ss_pred EEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEE--CCEEEcCHHHHHHHHHc
Confidence 356778999999999999999988 8888886543222 23556678889999876 35678899999987754
No 188
>PRK10026 arsenate reductase; Provisional
Probab=96.78 E-value=0.0028 Score=50.97 Aligned_cols=37 Identities=14% Similarity=0.232 Sum_probs=33.5
Q ss_pred CceEEEecCCCchHHHHHHHHHHcCCceEEEECCCCC
Q 024026 68 TRLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGS 104 (273)
Q Consensus 68 ~~l~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~~~ 104 (273)
.+|++|+++.|.-|++++..|++.|++|+++++-...
T Consensus 2 ~~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~~~~p 38 (141)
T PRK10026 2 SNITIYHNPACGTSRNTLEMIRNSGTEPTIIHYLETP 38 (141)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeeeCCC
Confidence 4689999999999999999999999999999986543
No 189
>PLN02907 glutamate-tRNA ligase
Probab=96.71 E-value=0.0028 Score=63.79 Aligned_cols=63 Identities=19% Similarity=0.176 Sum_probs=48.9
Q ss_pred hhhhhccCCchHHHHHHHHHhcCCceEEEEcCCCCCCchhHHhhcCCCcccEEEcCCCCeeeccHHHHHHHHHhhcCC
Q 024026 191 LELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSYSA 268 (273)
Q Consensus 191 i~ly~~~~s~~~~~v~~~L~e~gi~y~~~~v~~~~~~~~~~~~~~~~~~VP~l~d~~~~~~l~eS~~I~~yL~~~y~~ 268 (273)
+++|....++.++ +...|.+.|++|.++. .+|.++||+|+++ +|..++||.+|++||++.|+.
T Consensus 3 ~kLy~~~~S~~~~-v~~~L~~lgv~~e~~~-------------~~p~GkVPvLv~d-dG~~L~ES~AIl~YLa~~~p~ 65 (722)
T PLN02907 3 AKLSFPPDSPPLA-VIAAAKVAGVPLTIDP-------------SLKSGSAPTLLFS-SGEKLTGTNVLLRYIARSASL 65 (722)
T ss_pred EEEEECCCCChHH-HHHHHHHcCCCcEEee-------------cCCCCCCcEEEEC-CCCEEECHHHHHHHHHHhCCC
Confidence 3566666666554 5777899999998754 1579999999864 357899999999999999854
No 190
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=96.46 E-value=0.027 Score=39.92 Aligned_cols=57 Identities=21% Similarity=0.364 Sum_probs=38.3
Q ss_pred ceEEEecCCCchHHHHHHHHHH----cCCceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCc
Q 024026 69 RLQLFEFEACPFCRRVREAITE----LDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGV 130 (273)
Q Consensus 69 ~l~Ly~~~~~p~~~~vr~~L~e----~~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~ 130 (273)
+++||..++||+|..+.-.|++ .+..+.+..++... .++.. +..+...+|+++. +|.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~--~~~~~-~~~~v~~vPt~~~--~g~ 62 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVME--NPQKA-MEYGIMAVPAIVI--NGD 62 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCcc--CHHHH-HHcCCccCCEEEE--CCE
Confidence 5789999999999999998865 34334444444322 23333 4566778999986 453
No 191
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=96.39 E-value=0.0069 Score=46.65 Aligned_cols=35 Identities=14% Similarity=0.284 Sum_probs=31.8
Q ss_pred eEEEecCCCchHHHHHHHHHHcCCceEEEECCCCC
Q 024026 70 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGS 104 (273)
Q Consensus 70 l~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~~~ 104 (273)
|+||+.+.|+-|++++-.|++.|++|+.+++-+..
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~~ 35 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEPEIVEYLKTP 35 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecccCC
Confidence 58999999999999999999999999999986543
No 192
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=96.34 E-value=0.0076 Score=46.60 Aligned_cols=35 Identities=14% Similarity=0.273 Sum_probs=31.8
Q ss_pred eEEEecCCCchHHHHHHHHHHcCCceEEEECCCCC
Q 024026 70 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGS 104 (273)
Q Consensus 70 l~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~~~ 104 (273)
++||+.+.|+-|++++..|++.|++|+.+++-...
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~p 35 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVKYLKNP 35 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEeccCCC
Confidence 57999999999999999999999999999986543
No 193
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=96.34 E-value=0.015 Score=37.64 Aligned_cols=55 Identities=22% Similarity=0.350 Sum_probs=40.0
Q ss_pred eEEEecCCCchHHHHHHHHH-----HcCCceEEEECCCCChhhHHHHHHhCCCCcccEEEeC
Q 024026 70 LQLFEFEACPFCRRVREAIT-----ELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDP 126 (273)
Q Consensus 70 l~Ly~~~~~p~~~~vr~~L~-----e~~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~ 126 (273)
+.+|...+|++|++++..+. ..++.+..++++.... .... ...++...+|+++.-
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~P~~~~~ 60 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPA-LEKE-LKRYGVGGVPTLVVF 60 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChH-HhhH-HHhCCCccccEEEEE
Confidence 35777889999999999999 5677777777765432 1222 246778899999864
No 194
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.031 Score=41.82 Aligned_cols=73 Identities=14% Similarity=0.203 Sum_probs=56.6
Q ss_pred CCCCceEEEe-----cCCCchHHHHHHHHHHcC-CceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCccccChHHH
Q 024026 65 DSPTRLQLFE-----FEACPFCRRVREAITELD-LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDI 138 (273)
Q Consensus 65 ~~~~~l~Ly~-----~~~~p~~~~vr~~L~e~~-l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~~l~ES~aI 138 (273)
..++++.||- +|.|.|+.++.-+|...| ++|..++|-.++ .-|+-+++.+.--++|.|.. +|..+..|+-|
T Consensus 12 i~~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~-eiR~~lk~~s~WPT~PQLyi--~GEfvGG~DIv 88 (105)
T COG0278 12 IKENPVVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVLQDP-EIRQGLKEYSNWPTFPQLYV--NGEFVGGCDIV 88 (105)
T ss_pred hhcCceEEEecCCCCCCCCCccHHHHHHHHHcCCcceeEEeeccCH-HHHhccHhhcCCCCCceeeE--CCEEeccHHHH
Confidence 3456788885 578999999999999999 788888886553 45566777888889999975 68877776655
Q ss_pred HH
Q 024026 139 VN 140 (273)
Q Consensus 139 ~~ 140 (273)
.+
T Consensus 89 ~E 90 (105)
T COG0278 89 RE 90 (105)
T ss_pred HH
Confidence 44
No 195
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=96.04 E-value=0.043 Score=39.52 Aligned_cols=51 Identities=22% Similarity=0.416 Sum_probs=36.8
Q ss_pred ceEEEecCCCchHHHHHHHHHHcC----CceEEEECCCCChhhHHHHHHhCCCCcccEEEe
Q 024026 69 RLQLFEFEACPFCRRVREAITELD----LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLID 125 (273)
Q Consensus 69 ~l~Ly~~~~~p~~~~vr~~L~e~~----l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d 125 (273)
.++||+.++|+.|..++..|.... +.++.++|..+ +++. +... -.||||..
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d----~~l~-~~Y~-~~IPVl~~ 55 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDED----PELF-EKYG-YRIPVLHI 55 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTT----HHHH-HHSC-TSTSEEEE
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCCC----HHHH-HHhc-CCCCEEEE
Confidence 478999999999999999999764 44555666632 3443 5664 48999986
No 196
>PHA02125 thioredoxin-like protein
Probab=95.90 E-value=0.035 Score=39.29 Aligned_cols=52 Identities=17% Similarity=0.316 Sum_probs=38.9
Q ss_pred ceEEEecCCCchHHHHHHHHHHcCCceEEEECCCCChhhHHHHHHhCCCCcccEEEe
Q 024026 69 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLID 125 (273)
Q Consensus 69 ~l~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d 125 (273)
|+.+|+.+||+.|+.+...|+++ .++...++.+. .++. .+...-..+|++++
T Consensus 1 ~iv~f~a~wC~~Ck~~~~~l~~~--~~~~~~vd~~~--~~~l-~~~~~v~~~PT~~~ 52 (75)
T PHA02125 1 MIYLFGAEWCANCKMVKPMLANV--EYTYVDVDTDE--GVEL-TAKHHIRSLPTLVN 52 (75)
T ss_pred CEEEEECCCCHhHHHHHHHHHHH--hheEEeeeCCC--CHHH-HHHcCCceeCeEEC
Confidence 57899999999999999999854 56666666443 2343 36667789999984
No 197
>PRK10824 glutaredoxin-4; Provisional
Probab=95.87 E-value=0.029 Score=43.45 Aligned_cols=64 Identities=9% Similarity=0.094 Sum_probs=50.7
Q ss_pred cCCchHHHHHHHHHhcCCceEEEEcCCCCCCchhHHhhcCCCcccEEEcCCCCeeeccHHHHHHHH
Q 024026 197 ENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYL 262 (273)
Q Consensus 197 ~~s~~~~~v~~~L~e~gi~y~~~~v~~~~~~~~~~~~~~~~~~VP~l~d~~~~~~l~eS~~I~~yL 262 (273)
+.||+|+++...|...+++|...++..+...+..+.++++...||-+.- +|..+..+..+.+..
T Consensus 28 p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI--~G~~IGG~ddl~~l~ 91 (115)
T PRK10824 28 PSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANWPTFPQLWV--DGELVGGCDIVIEMY 91 (115)
T ss_pred CCCchHHHHHHHHHHcCCCceEEEecCCHHHHHHHHHHhCCCCCCeEEE--CCEEEcChHHHHHHH
Confidence 4799999999999999999999998765545566777889999997765 356677777777643
No 198
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=95.83 E-value=0.029 Score=41.33 Aligned_cols=58 Identities=16% Similarity=0.222 Sum_probs=43.0
Q ss_pred ceEEEecCCCchHHHHHHHHHHc-----CCceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCcccc
Q 024026 69 RLQLFEFEACPFCRRVREAITEL-----DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMY 133 (273)
Q Consensus 69 ~l~Ly~~~~~p~~~~vr~~L~e~-----~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~~l~ 133 (273)
.+.+|..++||+|..++.+++++ ++.++.++++.. ++.. +..+-..||.++- +|..++
T Consensus 15 ~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~----~e~a-~~~~V~~vPt~vi--dG~~~~ 77 (89)
T cd03026 15 NFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALF----QDEV-EERGIMSVPAIFL--NGELFG 77 (89)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhC----HHHH-HHcCCccCCEEEE--CCEEEE
Confidence 57899999999999999888776 577777776532 3333 5666778999986 576544
No 199
>KOG2903 consensus Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.61 E-value=0.13 Score=45.27 Aligned_cols=193 Identities=18% Similarity=0.178 Sum_probs=98.0
Q ss_pred CceEEEecCCCchHHHHHHHHHHcCCc----eEEE-EC-CCCCh--------------------------hhHHHHHHhC
Q 024026 68 TRLQLFEFEACPFCRRVREAITELDLS----VEVF-PC-PKGSI--------------------------RHREMVRRLG 115 (273)
Q Consensus 68 ~~l~Ly~~~~~p~~~~vr~~L~e~~l~----~~~~-~v-~~~~~--------------------------~~~~~~~~~~ 115 (273)
..+.||..-.||++.|..++++.+|++ +-.+ ++ +..++ .-++......
T Consensus 36 gryhLYvslaCPWAhRtLi~r~LKGL~~~i~~s~v~~~~d~~gW~F~~~~~~~nDs~~l~~~~d~~~g~k~l~elY~~~~ 115 (319)
T KOG2903|consen 36 GRYHLYVSLACPWAHRTLIVRALKGLEPAIGVSVVHWHLDDKGWRFLDEHIIINDSERLGVTPDPLNGAKRLRELYYIAS 115 (319)
T ss_pred ceEEEEEeccCcHHHHHHHHHHHcCccccceeEEeccccCCCcccCCCcccCCCchhcccCCCcccccchhHHHHHhhcC
Confidence 578999999999999999999999975 2222 21 11111 1123332222
Q ss_pred ----CCCcccEEEeCCCC-ccccChHHHHHHHHHHhC---C-CCCCCCC---hhHHHHHHhhhhhH---Hhhcccchhhc
Q 024026 116 ----GKEQFPFLIDPNTG-VSMYESGDIVNYLFQQYG---K-GRSPSTG---LLESTLITGWMPTI---FRAGRGMTLWE 180 (273)
Q Consensus 116 ----p~~~vP~L~d~~~g-~~l~ES~aI~~YL~~~~~---~-~~~~~~~---~~~~~~~~~wl~~~---~~~~~~~~~~~ 180 (273)
++.+||||-|..+. .+=-||.+|++.+...|. . ...+.-| +.-+++++.|-.+. .+.|.--..+
T Consensus 116 p~Y~grfTVPVLWD~k~ktIVnNES~eIIr~fNs~f~ef~~~~e~~~lDL~P~~L~~~Ide~N~wvy~~INNGVYk~GF- 194 (319)
T KOG2903|consen 116 PNYTGRFTVPVLWDLKTKTIVNNESSEIIRMFNSAFDEFNGIAENPVLDLYPSSLRAQIDETNSWVYDKINNGVYKCGF- 194 (319)
T ss_pred CCCCceEEEEEEEccccceeecCchHHHHHHHhhhhhhhhccccCCccccCCHHHHHHHhhhhceecccccCceeeecc-
Confidence 45789999986433 346799999999994432 2 1111111 12356666665532 1222110001
Q ss_pred ccCCCCCc-hhhhhhhccCCchHHHHHHHHHhcCCceEEEEcCCCCCCchhHHhhcCCCcccEEE-cCCCCeeeccHHHH
Q 024026 181 KARPDPPS-KKLELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLI-DPNTSTQIGDYKKI 258 (273)
Q Consensus 181 ~~~~~~~~-~~i~ly~~~~s~~~~~v~~~L~e~gi~y~~~~v~~~~~~~~~~~~~~~~~~VP~l~-d~~~~~~l~eS~~I 258 (273)
+-..+.-+ ++-.+| ..+.+++..|.++-..|++++-.. +.+-.-|..+-.+..|-+.. -=|....-.|...|
T Consensus 195 A~~~e~Ye~~V~~lf-----e~LDr~E~vL~~~~~~f~~G~~LT-eaDirLy~TiIRFD~VY~~hFKCn~~~ir~~Yp~l 268 (319)
T KOG2903|consen 195 AEKQEAYEEEVNQLF-----EALDRCEDVLGKNRKYFLCGDTLT-EADIRLYTTIIRFDEVYVQHFKCNKKTIRDEYPNL 268 (319)
T ss_pred ccccchHHHHHHHHH-----HHHHHHHHHHhcccceEeeccccc-hhheeeeeeEEeehhhhheeeecchhhhhccCcHH
Confidence 00112222 222333 347788999988744577665221 11111111111121111110 00111122388889
Q ss_pred HHHHHhhcC
Q 024026 259 LSYLFQSYS 267 (273)
Q Consensus 259 ~~yL~~~y~ 267 (273)
..||.+-|-
T Consensus 269 ~~~lk~iY~ 277 (319)
T KOG2903|consen 269 HNWLKNIYW 277 (319)
T ss_pred HHHHHHHHh
Confidence 999988773
No 200
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=95.50 E-value=0.074 Score=40.69 Aligned_cols=67 Identities=22% Similarity=0.521 Sum_probs=46.2
Q ss_pred CchHHHHHHHHHHc-----CCceEEEECCCCChhhHHHHHHhCC-CCcccEEEeCCCCc-------------cccChHHH
Q 024026 78 CPFCRRVREAITEL-----DLSVEVFPCPKGSIRHREMVRRLGG-KEQFPFLIDPNTGV-------------SMYESGDI 138 (273)
Q Consensus 78 ~p~~~~vr~~L~e~-----~l~~~~~~v~~~~~~~~~~~~~~~p-~~~vP~L~d~~~g~-------------~l~ES~aI 138 (273)
||.|..+.=+|..- .|+++.+...+- ..+....++. +...|+||-+ +|. .|.+...|
T Consensus 24 Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RP---R~~vi~llGE~~QslPvLVL~-~~~~~~~~~~~~~~~rfi~d~~~I 99 (112)
T PF11287_consen 24 CPHCAAIEGLLASFPDLRERLDVRRVDFPRP---RQAVIALLGEANQSLPVLVLA-DGAPSPDDAGSHGGRRFIDDPRRI 99 (112)
T ss_pred CCchHHHHhHHhhChhhhhcccEEEeCCCCc---hHHHHHHhChhccCCCEEEeC-CCCCCcccccccCCeEEeCCHHHH
Confidence 99999998888754 455555444432 1233323443 6789999875 333 68999999
Q ss_pred HHHHHHHhCC
Q 024026 139 VNYLFQQYGK 148 (273)
Q Consensus 139 ~~YL~~~~~~ 148 (273)
++||+++||-
T Consensus 100 ~~~La~r~g~ 109 (112)
T PF11287_consen 100 LRYLAERHGF 109 (112)
T ss_pred HHHHHHHcCC
Confidence 9999999984
No 201
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=95.45 E-value=0.036 Score=48.67 Aligned_cols=63 Identities=16% Similarity=0.266 Sum_probs=52.1
Q ss_pred cCCchHHHHHHHHHhcCCceEEEEcCCCCCCchhHHhhcCCCcccEEEcCCCCeeeccHHHHHHHHHhhcCCC
Q 024026 197 ENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSYSAS 269 (273)
Q Consensus 197 ~~s~~~~~v~~~L~e~gi~y~~~~v~~~~~~~~~~~~~~~~~~VP~l~d~~~~~~l~eS~~I~~yL~~~y~~~ 269 (273)
.++|+|-++|..|...+++|+..+... ..++.+|++|+++- +|..+.+|.-|...|.++|+-.
T Consensus 59 nLSPfClKvEt~lR~~~IpYE~~~~~~--------~~rSr~G~lPFIEL--NGe~iaDS~~I~~~L~~hf~~~ 121 (281)
T KOG4244|consen 59 NLSPFCLKVETFLRAYDIPYEIVDCSL--------KRRSRNGTLPFIEL--NGEHIADSDLIEDRLRKHFKIP 121 (281)
T ss_pred CCChHHHHHHHHHHHhCCCceeccccc--------eeeccCCCcceEEe--CCeeccccHHHHHHHHHHcCCC
Confidence 379999999999999999999876321 14567899999887 4678999999999999998754
No 202
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=95.27 E-value=0.7 Score=39.50 Aligned_cols=171 Identities=16% Similarity=0.232 Sum_probs=89.0
Q ss_pred CceEEEec---CCCchHHHHHHHHHHcC-----CceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCcccc----C-
Q 024026 68 TRLQLFEF---EACPFCRRVREAITELD-----LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMY----E- 134 (273)
Q Consensus 68 ~~l~Ly~~---~~~p~~~~vr~~L~e~~-----l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~~l~----E- 134 (273)
..+.+|.. +|||.|+.+.-+|+++. +.+..+.++... .++. .+...-..+|+++-=++|..+. .
T Consensus 21 ~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~--~~~l-~~~~~V~~~Pt~~~f~~g~~~~~~~~G~ 97 (215)
T TIGR02187 21 VEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPE--DKEE-AEKYGVERVPTTIILEEGKDGGIRYTGI 97 (215)
T ss_pred eEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcc--cHHH-HHHcCCCccCEEEEEeCCeeeEEEEeec
Confidence 35777877 89999999998887773 334455665332 3343 3566678899996523443221 1
Q ss_pred --hHHHHHHHHHHhCCCCCCCCChhHHHHHHhhhhhHHhhcccchhhcccCCCCCchhhhhhhccCCchHHHHHHHHHhc
Q 024026 135 --SGDIVNYLFQQYGKGRSPSTGLLESTLITGWMPTIFRAGRGMTLWEKARPDPPSKKLELFSYENNPYARIVREALCEL 212 (273)
Q Consensus 135 --S~aI~~YL~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~i~ly~~~~s~~~~~v~~~L~e~ 212 (273)
-..+..+|...++-.. ......+ . ...-+. . ...+-.+..|....|++|..+...+.+.
T Consensus 98 ~~~~~l~~~i~~~~~~~~-~~~~L~~-~-~~~~l~---~-------------~~~pv~I~~F~a~~C~~C~~~~~~l~~l 158 (215)
T TIGR02187 98 PAGYEFAALIEDIVRVSQ-GEPGLSE-K-TVELLQ---S-------------LDEPVRIEVFVTPTCPYCPYAVLMAHKF 158 (215)
T ss_pred CCHHHHHHHHHHHHHhcC-CCCCCCH-H-HHHHHH---h-------------cCCCcEEEEEECCCCCCcHHHHHHHHHH
Confidence 2234445544432110 0000000 0 000000 0 0112234456677889998877666543
Q ss_pred -----CCceEEEEcCCCCCCchhHHhhcCCCcccEEEcCCCCe-e--eccHHHHHHHHHh
Q 024026 213 -----ELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTST-Q--IGDYKKILSYLFQ 264 (273)
Q Consensus 213 -----gi~y~~~~v~~~~~~~~~~~~~~~~~~VP~l~d~~~~~-~--l~eS~~I~~yL~~ 264 (273)
.+.+..++ . ...++..+..+-..+|.++-.+++. . ...-..+.++|.+
T Consensus 159 ~~~~~~i~~~~vD--~--~~~~~~~~~~~V~~vPtl~i~~~~~~~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 159 ALANDKILGEMIE--A--NENPDLAEKYGVMSVPKIVINKGVEEFVGAYPEEQFLEYILS 214 (215)
T ss_pred HHhcCceEEEEEe--C--CCCHHHHHHhCCccCCEEEEecCCEEEECCCCHHHHHHHHHh
Confidence 13333333 2 2345666777888899876444443 1 2233566777754
No 203
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=95.17 E-value=0.052 Score=43.95 Aligned_cols=61 Identities=16% Similarity=0.216 Sum_probs=48.2
Q ss_pred CCchHHHHHHHHHhcCCceEEEEcCCCCCCchhHHhhcCC----CcccEEEcCCCCeeeccHHHHHH
Q 024026 198 NNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGS----KEVPYLIDPNTSTQIGDYKKILS 260 (273)
Q Consensus 198 ~s~~~~~v~~~L~e~gi~y~~~~v~~~~~~~~~~~~~~~~----~~VP~l~d~~~~~~l~eS~~I~~ 260 (273)
..++|..++..|...+++|..++|..+...++++.++.+. ..||.+..+ +..+....++.+
T Consensus 15 t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI~--G~~IGG~del~~ 79 (147)
T cd03031 15 TFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFVD--GRYLGGAEEVLR 79 (147)
T ss_pred cChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEEC--CEEEecHHHHHH
Confidence 6899999999999999999999998665566777776554 789987763 456667766666
No 204
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=95.01 E-value=0.098 Score=36.99 Aligned_cols=57 Identities=23% Similarity=0.310 Sum_probs=43.4
Q ss_pred CCchHHHHHHHHHhcCCc---eEEEEcCCCCCCchhHHhhcCCCcccEEEcCCCCeeeccHHHHHHHHH
Q 024026 198 NNPYARIVREALCELELP---YILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLF 263 (273)
Q Consensus 198 ~s~~~~~v~~~L~e~gi~---y~~~~v~~~~~~~~~~~~~~~~~~VP~l~d~~~~~~l~eS~~I~~yL~ 263 (273)
+++-|-.+...|+..+.+ |.++.... -.++|.+++|+|.+ .++..+.+..+|++||.
T Consensus 13 id~ecLa~~~yl~~~~~~~~~~~vv~s~n--------~~~Sptg~LP~L~~-~~~~~vsg~~~Iv~yL~ 72 (72)
T PF10568_consen 13 IDPECLAVIAYLKFAGAPEQQFKVVPSNN--------PWLSPTGELPALID-SGGTWVSGFRNIVEYLR 72 (72)
T ss_pred cCHHHHHHHHHHHhCCCCCceEEEEEcCC--------CCcCCCCCCCEEEE-CCCcEEECHHHHHHhhC
Confidence 466777778888888778 88876322 13578999999998 34567889999999983
No 205
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=94.84 E-value=0.21 Score=35.32 Aligned_cols=58 Identities=24% Similarity=0.509 Sum_probs=39.1
Q ss_pred ceEEEecCCCchHHHHHH----HHHHcCCceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCccccCh
Q 024026 69 RLQLFEFEACPFCRRVRE----AITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYES 135 (273)
Q Consensus 69 ~l~Ly~~~~~p~~~~vr~----~L~e~~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~~l~ES 135 (273)
.++++ .++||+|.++.. ++.++|+.++++++. + .+.. +..+-..||.|+- ||...+..
T Consensus 2 ~I~v~-~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~~--~---~~~~-~~ygv~~vPalvI--ng~~~~~G 63 (76)
T PF13192_consen 2 KIKVF-SPGCPYCPELVQLLKEAAEELGIEVEIIDIE--D---FEEI-EKYGVMSVPALVI--NGKVVFVG 63 (76)
T ss_dssp EEEEE-CSSCTTHHHHHHHHHHHHHHTTEEEEEEETT--T---HHHH-HHTT-SSSSEEEE--TTEEEEES
T ss_pred EEEEe-CCCCCCcHHHHHHHHHHHHhcCCeEEEEEcc--C---HHHH-HHcCCCCCCEEEE--CCEEEEEe
Confidence 35674 556999986555 666779888888862 1 2334 5667889999986 67755543
No 206
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=94.45 E-value=0.089 Score=40.17 Aligned_cols=31 Identities=19% Similarity=0.379 Sum_probs=24.9
Q ss_pred EecCCCchHHHHHHHHHHcCCceEEEECCCC
Q 024026 73 FEFEACPFCRRVREAITELDLSVEVFPCPKG 103 (273)
Q Consensus 73 y~~~~~p~~~~vr~~L~e~~l~~~~~~v~~~ 103 (273)
|+.+.|.-|++++.+|++.|++|+.+++.+.
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~~~~~d~~k~ 31 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIEYEFIDYKKE 31 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT--EEEEETTTS
T ss_pred CcCCCCHHHHHHHHHHHHcCCCeEeehhhhC
Confidence 7889999999999999999999999998654
No 207
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=94.32 E-value=0.039 Score=42.34 Aligned_cols=51 Identities=16% Similarity=0.253 Sum_probs=38.8
Q ss_pred hhhhhccCCchHHHHHHHHHhcCCceEEEEcCCCCCCchhHHhhcCCCccc
Q 024026 191 LELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVP 241 (273)
Q Consensus 191 i~ly~~~~s~~~~~v~~~L~e~gi~y~~~~v~~~~~~~~~~~~~~~~~~VP 241 (273)
+++|+...|++|+++...|.++|++|..+++.......+++.++.....+|
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~ 51 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIVEEPPSKEELKKWLEKSGLP 51 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEecccCCcccHHHHHHHHHHcCCC
Confidence 357888999999999999999999999999976665555554443333333
No 208
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=93.68 E-value=0.14 Score=48.54 Aligned_cols=68 Identities=15% Similarity=0.421 Sum_probs=49.2
Q ss_pred hhhhhhccCCchHHHHHHHHHhcCCceEEEEcCCCCCCchhHH-h--------hcCCCcccEEEcCCCCeeeccHHHHHH
Q 024026 190 KLELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLV-D--------ITGSKEVPYLIDPNTSTQIGDYKKILS 260 (273)
Q Consensus 190 ~i~ly~~~~s~~~~~v~~~L~e~gi~y~~~~v~~~~~~~~~~~-~--------~~~~~~VP~l~d~~~~~~l~eS~~I~~ 260 (273)
.+++|+...||+|.++...|...|++|..++++++... .++. + ..+...||.+.-++ ..+....++.+
T Consensus 3 ~V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~~~~~~-~~~~~~~~~~~~~~~~g~~tvP~ifi~~--~~igGf~~l~~ 79 (410)
T PRK12759 3 EVRIYTKTNCPFCDLAKSWFGANDIPFTQISLDDDVKR-AEFYAEVNKNILLVEEHIRTVPQIFVGD--VHIGGYDNLMA 79 (410)
T ss_pred cEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCChhH-HHHHHHHhhccccccCCCCccCeEEECC--EEEeCchHHHH
Confidence 36788999999999999999999999999999755422 2322 2 24778999987643 44555455544
No 209
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=93.51 E-value=0.36 Score=36.69 Aligned_cols=73 Identities=21% Similarity=0.352 Sum_probs=55.0
Q ss_pred hhhhhhhccCCchHHHHHHHHHhcCCceEEEEcCCCCCCc---hhHHhhcCCCcccEEEcCCCCeeeccHHHHHHHHH
Q 024026 189 KKLELFSYENNPYARIVREALCELELPYILQNVGDGSSRT---KLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLF 263 (273)
Q Consensus 189 ~~i~ly~~~~s~~~~~v~~~L~e~gi~y~~~~v~~~~~~~---~~~~~~~~~~~VP~l~d~~~~~~l~eS~~I~~yL~ 263 (273)
.++-.|+...|++|..+...|...++.+.++.++...+.. ..+.++.+...||.+.- +|..+....+|+++-.
T Consensus 14 ~~VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI--~Gk~iGG~~dl~~lh~ 89 (104)
T KOG1752|consen 14 NPVVIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI--GGKFIGGASDLMALHK 89 (104)
T ss_pred CCEEEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE--CCEEEcCHHHHHHHHH
Confidence 3455677789999999999999999999999987654332 23456788999999877 4566777788877543
No 210
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.81 E-value=0.53 Score=40.51 Aligned_cols=72 Identities=15% Similarity=0.240 Sum_probs=57.1
Q ss_pred CCCceEEEe-----cCCCchHHHHHHHHHHcCCceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCccccChHHHHH
Q 024026 66 SPTRLQLFE-----FEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVN 140 (273)
Q Consensus 66 ~~~~l~Ly~-----~~~~p~~~~vr~~L~e~~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~~l~ES~aI~~ 140 (273)
..+++.||- .|.|.|++++.-.|.+.|++|...+|-.++ .-|+-+|+.+---++|.|.. +|..+..++-|..
T Consensus 137 ~a~~v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~~~~fdIL~De-elRqglK~fSdWPTfPQlyI--~GEFiGGlDIl~~ 213 (227)
T KOG0911|consen 137 KAKPVMLFMKGTPEEPKCGFSRQLVGILQSHNVNYTIFDVLTDE-ELRQGLKEFSDWPTFPQLYV--KGEFIGGLDILKE 213 (227)
T ss_pred ccCeEEEEecCCCCcccccccHHHHHHHHHcCCCeeEEeccCCH-HHHHHhhhhcCCCCccceeE--CCEeccCcHHHHH
Confidence 346788885 568999999999999999999999997654 35666778888889999985 6876666655444
No 211
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=92.74 E-value=0.66 Score=36.12 Aligned_cols=63 Identities=11% Similarity=0.297 Sum_probs=38.5
Q ss_pred ceEEEecCCCchHHHHHHHHHHc----CCceEEEECCCCC---h----hhHHHHHHh---CCCCcccEEEeCCCCcc
Q 024026 69 RLQLFEFEACPFCRRVREAITEL----DLSVEVFPCPKGS---I----RHREMVRRL---GGKEQFPFLIDPNTGVS 131 (273)
Q Consensus 69 ~l~Ly~~~~~p~~~~vr~~L~e~----~l~~~~~~v~~~~---~----~~~~~~~~~---~p~~~vP~L~d~~~g~~ 131 (273)
-+..|+.+|||+|+.+.-.|+++ ++++-.++++... . .-.++..+. ..-..+|.++-=.+|..
T Consensus 26 ~iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~k~Gk~ 102 (122)
T TIGR01295 26 ATFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHITDGKQ 102 (122)
T ss_pred EEEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEEeCCeE
Confidence 46778889999999976665544 5777777776432 1 112443222 23445999965456743
No 212
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=92.71 E-value=0.34 Score=37.10 Aligned_cols=52 Identities=27% Similarity=0.524 Sum_probs=35.6
Q ss_pred ceEEE-ecCCCchHHHHHHHHHHcC-----CceEEEECCCCChhhHHHHHHhCCCCcccEEEe
Q 024026 69 RLQLF-EFEACPFCRRVREAITELD-----LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLID 125 (273)
Q Consensus 69 ~l~Ly-~~~~~p~~~~vr~~L~e~~-----l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d 125 (273)
.+.+| +.+|||+|+.++-+|+++. +.+..++++. .++. .+..+-..||.++.
T Consensus 24 ~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~----~~~l-~~~~~v~~vPt~~i 81 (113)
T cd02975 24 DLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDE----DKEK-AEKYGVERVPTTIF 81 (113)
T ss_pred EEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCc----CHHH-HHHcCCCcCCEEEE
Confidence 45555 5689999999998888764 3444455553 2343 35667889999975
No 213
>KOG3027 consensus Mitochondrial outer membrane protein Metaxin 2, Metaxin 1-binding protein [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.62 E-value=0.73 Score=39.24 Aligned_cols=58 Identities=17% Similarity=0.192 Sum_probs=48.7
Q ss_pred chHHHHHHHHHHcCCceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCccccChHHHHHHHHHHh
Q 024026 79 PFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQY 146 (273)
Q Consensus 79 p~~~~vr~~L~e~~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~~l~ES~aI~~YL~~~~ 146 (273)
.-|..|..+|...++||.++-.+.. +| ++|.|+||.|.. +.+.+.|-..|+.+...+-
T Consensus 35 ascLAVqtfLrMcnLPf~v~~~~Na-----ef---mSP~G~vPllr~--g~~~~aef~pIV~fVeak~ 92 (257)
T KOG3027|consen 35 ASCLAVQTFLRMCNLPFNVRQRANA-----EF---MSPGGKVPLLRI--GKTLFAEFEPIVDFVEAKG 92 (257)
T ss_pred hhHHHHHHHHHHcCCCceeeecCCc-----cc---cCCCCCCceeee--cchhhhhhhHHHHHHHHhc
Confidence 4589999999999999998876543 22 789999999986 5678999999999998873
No 214
>COG0435 ECM4 Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.22 E-value=0.53 Score=41.83 Aligned_cols=189 Identities=18% Similarity=0.229 Sum_probs=100.0
Q ss_pred CCceEEEecCCCchHHHHHHHHHHcCCc----eEEEE-C-CCCCh------------------hhHHHHHH----hCCCC
Q 024026 67 PTRLQLFEFEACPFCRRVREAITELDLS----VEVFP-C-PKGSI------------------RHREMVRR----LGGKE 118 (273)
Q Consensus 67 ~~~l~Ly~~~~~p~~~~vr~~L~e~~l~----~~~~~-v-~~~~~------------------~~~~~~~~----~~p~~ 118 (273)
...+.||..-.||++.|..++=+.||+. +-++. . +.+.+ .-.+...+ -++..
T Consensus 49 ~GRYhLYvslaCPWAHRTLI~R~LkgLE~~Isvsvv~~~m~~~GW~F~~~~~g~t~dpl~g~~~L~~~Y~~adP~YsgRv 128 (324)
T COG0435 49 KGRYHLYVSLACPWAHRTLIFRALKGLEPVISVSVVHPLMDENGWTFDPEFPGATGDPLYGIERLSQLYTRADPDYSGRV 128 (324)
T ss_pred CCeEEEEEEecCchHHHHHHHHHHhcccccceEEEecccccCCCceEcCCCCCCCCCcccchhHHHHHHhhcCCCCCCce
Confidence 3478999999999999999988888875 22221 1 11111 01111112 24567
Q ss_pred cccEEEeCCCCc-cccChHHHHHHHHHHhCC---C--CCCCCChhHHHHHHhhhhhHH---hhcccchhhcccCCCCCch
Q 024026 119 QFPFLIDPNTGV-SMYESGDIVNYLFQQYGK---G--RSPSTGLLESTLITGWMPTIF---RAGRGMTLWEKARPDPPSK 189 (273)
Q Consensus 119 ~vP~L~d~~~g~-~l~ES~aI~~YL~~~~~~---~--~~~~~~~~~~~~~~~wl~~~~---~~~~~~~~~~~~~~~~~~~ 189 (273)
+||||.|..+.+ +=-||.+|++-|...|.+ . ...|. .-|.++..|..++. +.+.--..+ +...++-++
T Consensus 129 TVPVLwDk~~~tIVnNES~eIirm~N~aFde~~~~~~dlyP~--~Lr~eId~~n~~Iy~~vNNGVYk~GF-A~tq~aYee 205 (324)
T COG0435 129 TVPVLWDKKTQTIVNNESAEIIRMFNSAFDEFGASAVDLYPE--ALRTEIDELNKWIYDTVNNGVYKAGF-ATTQEAYEE 205 (324)
T ss_pred eEEEEEecCCCeeecCCcHHHHHHHHHHHHHHhhhccccCCH--HHHHHHHHHHhhhcccccCceeeecc-cchHHHHHH
Confidence 999999975554 356999999999877743 1 12232 23566666665322 222110000 000011112
Q ss_pred hhhhhhccCCchHHHHHHHHHhcCCceEEEEcCCCCCCchhHHhhcCCCcccEEEc-CCC-CeeeccHHHHHHHHHhhcC
Q 024026 190 KLELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLID-PNT-STQIGDYKKILSYLFQSYS 267 (273)
Q Consensus 190 ~i~ly~~~~s~~~~~v~~~L~e~gi~y~~~~v~~~~~~~~~~~~~~~~~~VP~l~d-~~~-~~~l~eS~~I~~yL~~~y~ 267 (273)
..+ .+-..+.+++..|.+. .|++++.-.. .+-.-|-.+-.+. |+.+- =.. -..|.|.+.|-.||.+.|-
T Consensus 206 a~~----~lF~~Ld~lE~~L~~~--ryl~Gd~lTE-AD~RLftTlvRFD--~VYvgHFKCN~~rI~dypnL~~yLr~LYq 276 (324)
T COG0435 206 AVK----KLFEALDKLEQILSER--RYLTGDQLTE-ADIRLFTTLVRFD--PVYVGHFKCNLRRIRDYPNLWGYLRDLYQ 276 (324)
T ss_pred HHH----HHHHHHHHHHHHhhcC--eeeccccchH-hhhhhhheeEeec--ceEEeeeecccchhhcCchHHHHHHHHhc
Confidence 211 1224577889999987 8887652110 1101111111111 22221 011 2347889999999998874
No 215
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=92.11 E-value=0.2 Score=37.74 Aligned_cols=45 Identities=13% Similarity=0.126 Sum_probs=36.2
Q ss_pred hhhhccCCchHHHHHHHHHhcCCceEEEEcCCCCCCchhHHhhcC
Q 024026 192 ELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITG 236 (273)
Q Consensus 192 ~ly~~~~s~~~~~v~~~L~e~gi~y~~~~v~~~~~~~~~~~~~~~ 236 (273)
++|+...|+.|+++...|.++|++|..+++........++.++..
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~~l~~~~~ 46 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEHGIEYEFIDYLKEPPTKEELKELLA 46 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHHH
Confidence 578889999999999999999999999999765555555555443
No 216
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=92.01 E-value=0.18 Score=38.79 Aligned_cols=35 Identities=17% Similarity=0.287 Sum_probs=31.0
Q ss_pred hhhhhccCCchHHHHHHHHHhcCCceEEEEcCCCC
Q 024026 191 LELFSYENNPYARIVREALCELELPYILQNVGDGS 225 (273)
Q Consensus 191 i~ly~~~~s~~~~~v~~~L~e~gi~y~~~~v~~~~ 225 (273)
+++|+...|+.|+++...|.++|++|..+++....
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~~~~ 36 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEHQIPFEERNLFKQP 36 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCceEEEecCCCc
Confidence 56888999999999999999999999999986543
No 217
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=91.96 E-value=0.85 Score=34.35 Aligned_cols=63 Identities=13% Similarity=0.115 Sum_probs=37.4
Q ss_pred ceEEEecCCCc------hHHHHHHHHHHcCCceEEEECCCCChhhHHHHHHhC---------CCCcccEEEeCCCCcccc
Q 024026 69 RLQLFEFEACP------FCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLG---------GKEQFPFLIDPNTGVSMY 133 (273)
Q Consensus 69 ~l~Ly~~~~~p------~~~~vr~~L~e~~l~~~~~~v~~~~~~~~~~~~~~~---------p~~~vP~L~d~~~g~~l~ 133 (273)
.|+||....+. .++++..+|+.++|+|+.+++..++ ..+++.++.. +..-.|.|.. +|..+.
T Consensus 2 ~I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e-~~r~~mr~~~g~~~~~~~~~~~lpPqiF~--~~~Y~G 78 (99)
T PF04908_consen 2 VIKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDE-EARQWMRENAGPEEKDPGNGKPLPPQIFN--GDEYCG 78 (99)
T ss_dssp SEEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-H-HHHHHHHHHT--CCCS-TSTT--S-EEEE--TTEEEE
T ss_pred EEEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCH-HHHHHHHHhccccccCCCCCCCCCCEEEe--CCEEEe
Confidence 46788765443 5789999999999999999998754 4455555544 3334467763 565444
Q ss_pred C
Q 024026 134 E 134 (273)
Q Consensus 134 E 134 (273)
+
T Consensus 79 d 79 (99)
T PF04908_consen 79 D 79 (99)
T ss_dssp E
T ss_pred e
Confidence 3
No 218
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=91.88 E-value=0.17 Score=40.06 Aligned_cols=34 Identities=21% Similarity=0.325 Sum_probs=30.4
Q ss_pred hhhhhccCCchHHHHHHHHHhcCCceEEEEcCCC
Q 024026 191 LELFSYENNPYARIVREALCELELPYILQNVGDG 224 (273)
Q Consensus 191 i~ly~~~~s~~~~~v~~~L~e~gi~y~~~~v~~~ 224 (273)
+++|+...|++|+++...|.++|++|..+++...
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~~~ 35 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEHDIPFTERNIFSS 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCcEEeeccCC
Confidence 5688999999999999999999999999998543
No 219
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=90.91 E-value=0.84 Score=33.83 Aligned_cols=58 Identities=10% Similarity=0.152 Sum_probs=44.6
Q ss_pred hHHHHHHHHHhcCCceEEEEcCCCCCCchhHHhhcCC----CcccEEEcCCCCeeeccHHHHHH
Q 024026 201 YARIVREALCELELPYILQNVGDGSSRTKLLVDITGS----KEVPYLIDPNTSTQIGDYKKILS 260 (273)
Q Consensus 201 ~~~~v~~~L~e~gi~y~~~~v~~~~~~~~~~~~~~~~----~~VP~l~d~~~~~~l~eS~~I~~ 260 (273)
.|+.+...|..++++|..++|..++..+.++.+..+. ..||-+.. ++..+.+..++.+
T Consensus 18 ~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIFi--~~~~iGg~ddl~~ 79 (92)
T cd03030 18 RQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFN--GDEYCGDYEAFFE 79 (92)
T ss_pred HHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEEE--CCEEeeCHHHHHH
Confidence 4667788999999999999998777777777777553 78997654 3456777777766
No 220
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=90.91 E-value=0.89 Score=31.82 Aligned_cols=57 Identities=14% Similarity=0.174 Sum_probs=39.1
Q ss_pred ceEEEecCCCchHHHHHHHHHH-----cCCceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCc
Q 024026 69 RLQLFEFEACPFCRRVREAITE-----LDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGV 130 (273)
Q Consensus 69 ~l~Ly~~~~~p~~~~vr~~L~e-----~~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~ 130 (273)
-+.+|+.++|+.|+.+...+++ .++.+-.++++.. .+.. +..+...+|+++--++|.
T Consensus 13 ~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~----~~~~-~~~~v~~~P~~~~~~~g~ 74 (93)
T cd02947 13 VVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDEN----PELA-EEYGVRSIPTFLFFKNGK 74 (93)
T ss_pred EEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCC----hhHH-HhcCcccccEEEEEECCE
Confidence 4667778899999999999988 6777766676542 2333 444566799875423454
No 221
>PF09635 MetRS-N: MetRS-N binding domain; InterPro: IPR018285 This entry represents the N-terminal domain of methionyl-tRNA synthetase (MetRS). This N-terminal appended domain mediates non-catalytic complex formation through its interaction with a domain in the tRNA aminoacylation cofactor Arc1p. The interacting domains of MetRS, GluRS (glutamyl-tRNA synthetase) and Arc1p form a ternary complex resembling a classical GST homo-dimer []. Domain-swapping between symmetrically related MetRS-N and Arc1p-N domains generates a 2:2 tetramer held together by van der Waals forces. This domain is necessary for formation of the aminoacyl-tRNA synthetase complex necessary for tRNA nuclear export and shuttling as part of the translational apparatus. ; PDB: 2HSN_A.
Probab=90.85 E-value=0.12 Score=40.09 Aligned_cols=36 Identities=28% Similarity=0.553 Sum_probs=17.4
Q ss_pred HhCCCCcccEEEeCCCCccccChHHHHHHHHHHhCC
Q 024026 113 RLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYGK 148 (273)
Q Consensus 113 ~~~p~~~vP~L~d~~~g~~l~ES~aI~~YL~~~~~~ 148 (273)
++|....-|-|.+..+|+.++|+.||++||..-|..
T Consensus 29 ~v~ed~~~~~L~~~~~gF~L~e~NAIvrYl~nDF~~ 64 (122)
T PF09635_consen 29 EVNEDESGPLLKDKKSGFELFEPNAIVRYLANDFEG 64 (122)
T ss_dssp EE-SS--S--EEE-S--S----HHHHHHHHTT--TT
T ss_pred eeCCccccceeeecCCceEEecccHHHHHHHhhcCC
Confidence 344445568897777999999999999999998853
No 222
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=90.67 E-value=1.6 Score=37.23 Aligned_cols=56 Identities=14% Similarity=0.315 Sum_probs=37.4
Q ss_pred ceEEEecCCCchHHHHHHHHHHcC-----CceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCC
Q 024026 69 RLQLFEFEACPFCRRVREAITELD-----LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTG 129 (273)
Q Consensus 69 ~l~Ly~~~~~p~~~~vr~~L~e~~-----l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g 129 (273)
.+++|..+|||+|..+..+++++- +.+..++++. .++.. +..+-..||+++-..+|
T Consensus 136 ~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~----~~~~~-~~~~V~~vPtl~i~~~~ 196 (215)
T TIGR02187 136 RIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANE----NPDLA-EKYGVMSVPKIVINKGV 196 (215)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCC----CHHHH-HHhCCccCCEEEEecCC
Confidence 567788999999999998888753 4444344433 23433 55667789999763334
No 223
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=90.51 E-value=1.3 Score=32.48 Aligned_cols=60 Identities=13% Similarity=0.185 Sum_probs=36.9
Q ss_pred CCceEEEecCCCchHHHHHHHHHHc------CCceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCcc
Q 024026 67 PTRLQLFEFEACPFCRRVREAITEL------DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVS 131 (273)
Q Consensus 67 ~~~l~Ly~~~~~p~~~~vr~~L~e~------~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~~ 131 (273)
+.-+.+|..++|+.|+...-.|+++ ++.+..++++. .++.. +...-..+|+++--++|..
T Consensus 14 ~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~----~~~l~-~~~~v~~vPt~~i~~~g~~ 79 (97)
T cd02949 14 RLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDE----DQEIA-EAAGIMGTPTVQFFKDKEL 79 (97)
T ss_pred CeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCC----CHHHH-HHCCCeeccEEEEEECCeE
Confidence 3356677789999999988877662 24444445443 23433 4445678998854335543
No 224
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=89.79 E-value=0.37 Score=37.16 Aligned_cols=40 Identities=15% Similarity=0.268 Sum_probs=32.9
Q ss_pred hhhhccCCchHHHHHHHHHhcCCceEEEEcCCCCCCchhH
Q 024026 192 ELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLL 231 (273)
Q Consensus 192 ~ly~~~~s~~~~~v~~~L~e~gi~y~~~~v~~~~~~~~~~ 231 (273)
++|+...|+.|+++...|.++|++|..+++......+.++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el 41 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEANGIEYQFIDIGEDGPTREEL 41 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHHcCCceEEEecCCChhhHHHH
Confidence 5788899999999999999999999999986554444444
No 225
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=89.66 E-value=1.6 Score=32.31 Aligned_cols=56 Identities=14% Similarity=0.139 Sum_probs=33.2
Q ss_pred ceEEEecCCCchHHHHHHHH-------HHc--CCceEEEECCCCChhhHHHHHHhCCCCcccEEEe
Q 024026 69 RLQLFEFEACPFCRRVREAI-------TEL--DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLID 125 (273)
Q Consensus 69 ~l~Ly~~~~~p~~~~vr~~L-------~e~--~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d 125 (273)
-+..|+.+||++|++....+ +++ ++.+-.++++..+....+.. +...-..+|+++-
T Consensus 14 vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~-~~~~i~~~Pti~~ 78 (104)
T cd02953 14 VFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALL-KRFGVFGPPTYLF 78 (104)
T ss_pred EEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHH-HHcCCCCCCEEEE
Confidence 45677789999999876433 122 34444445544332234444 5556778998854
No 226
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=89.61 E-value=0.47 Score=37.61 Aligned_cols=33 Identities=18% Similarity=0.356 Sum_probs=30.0
Q ss_pred hhhhhccCCchHHHHHHHHHhcCCceEEEEcCC
Q 024026 191 LELFSYENNPYARIVREALCELELPYILQNVGD 223 (273)
Q Consensus 191 i~ly~~~~s~~~~~v~~~L~e~gi~y~~~~v~~ 223 (273)
+++|+...|+.|++....|.++|++|..+++.+
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~~ 34 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAHQLSYKEQNLGK 34 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 568899999999999999999999999999854
No 227
>PF09635 MetRS-N: MetRS-N binding domain; InterPro: IPR018285 This entry represents the N-terminal domain of methionyl-tRNA synthetase (MetRS). This N-terminal appended domain mediates non-catalytic complex formation through its interaction with a domain in the tRNA aminoacylation cofactor Arc1p. The interacting domains of MetRS, GluRS (glutamyl-tRNA synthetase) and Arc1p form a ternary complex resembling a classical GST homo-dimer []. Domain-swapping between symmetrically related MetRS-N and Arc1p-N domains generates a 2:2 tetramer held together by van der Waals forces. This domain is necessary for formation of the aminoacyl-tRNA synthetase complex necessary for tRNA nuclear export and shuttling as part of the translational apparatus. ; PDB: 2HSN_A.
Probab=89.29 E-value=0.26 Score=38.35 Aligned_cols=34 Identities=18% Similarity=0.333 Sum_probs=16.4
Q ss_pred cCCCcccEEEcCCCCeeeccHHHHHHHHHhhcCC
Q 024026 235 TGSKEVPYLIDPNTSTQIGDYKKILSYLFQSYSA 268 (273)
Q Consensus 235 ~~~~~VP~l~d~~~~~~l~eS~~I~~yL~~~y~~ 268 (273)
+....-|-|.+..+++.++|..||++||..-|-.
T Consensus 31 ~ed~~~~~L~~~~~gF~L~e~NAIvrYl~nDF~~ 64 (122)
T PF09635_consen 31 NEDESGPLLKDKKSGFELFEPNAIVRYLANDFEG 64 (122)
T ss_dssp -SS--S--EEE-S--S----HHHHHHHHTT--TT
T ss_pred CCccccceeeecCCceEEecccHHHHHHHhhcCC
Confidence 3344458888888899999999999999988754
No 228
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=89.11 E-value=4.2 Score=29.36 Aligned_cols=73 Identities=15% Similarity=0.311 Sum_probs=44.4
Q ss_pred ceEEEecCCCchHHHHHHHHHHc----CCceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCccc------cChHHH
Q 024026 69 RLQLFEFEACPFCRRVREAITEL----DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSM------YESGDI 138 (273)
Q Consensus 69 ~l~Ly~~~~~p~~~~vr~~L~e~----~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~~l------~ES~aI 138 (273)
-+..|+.++|+.|+..+-.+.++ +-++.+..++... .++.. +...-..+|.++--.+|..+ .+...|
T Consensus 20 vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~--~~~l~-~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l 96 (103)
T PF00085_consen 20 VVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDE--NKELC-KKYGVKSVPTIIFFKNGKEVKRYNGPRNAESL 96 (103)
T ss_dssp EEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTT--SHHHH-HHTTCSSSSEEEEEETTEEEEEEESSSSHHHH
T ss_pred EEEEEeCCCCCccccccceecccccccccccccchhhhhc--cchhh-hccCCCCCCEEEEEECCcEEEEEECCCCHHHH
Confidence 45666778999999988766554 2134444443322 24444 55567889998654455422 356677
Q ss_pred HHHHHH
Q 024026 139 VNYLFQ 144 (273)
Q Consensus 139 ~~YL~~ 144 (273)
..+|.+
T Consensus 97 ~~~i~~ 102 (103)
T PF00085_consen 97 IEFIEK 102 (103)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 777765
No 229
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=88.81 E-value=0.91 Score=33.99 Aligned_cols=24 Identities=17% Similarity=0.585 Sum_probs=16.5
Q ss_pred CCceEEEecCCCchHHHHHHHHHH
Q 024026 67 PTRLQLFEFEACPFCRRVREAITE 90 (273)
Q Consensus 67 ~~~l~Ly~~~~~p~~~~vr~~L~e 90 (273)
...+.+|..++||+|++....+.+
T Consensus 6 k~~v~~F~~~~C~~C~~~~~~~~~ 29 (112)
T PF13098_consen 6 KPIVVVFTDPWCPYCKKLEKELFP 29 (112)
T ss_dssp SEEEEEEE-TT-HHHHHHHHHHHH
T ss_pred CEEEEEEECCCCHHHHHHHHHHHH
Confidence 345667778999999998776653
No 230
>PRK12559 transcriptional regulator Spx; Provisional
Probab=88.58 E-value=0.56 Score=37.12 Aligned_cols=33 Identities=18% Similarity=0.242 Sum_probs=29.6
Q ss_pred hhhhhccCCchHHHHHHHHHhcCCceEEEEcCC
Q 024026 191 LELFSYENNPYARIVREALCELELPYILQNVGD 223 (273)
Q Consensus 191 i~ly~~~~s~~~~~v~~~L~e~gi~y~~~~v~~ 223 (273)
+++|+...|+.|++....|.+.|++|..+++..
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~gi~~~~~di~~ 34 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEENQIDYTEKNIVS 34 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCeEEEEeeC
Confidence 567889999999999999999999999998754
No 231
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=87.56 E-value=1.4 Score=31.31 Aligned_cols=62 Identities=19% Similarity=0.286 Sum_probs=46.0
Q ss_pred hhhhccCCchHHHHHHHHHhcCCceEEEEcCCC----------CCCchhH--HhhcCCCcccEEEcCCCCeeec
Q 024026 192 ELFSYENNPYARIVREALCELELPYILQNVGDG----------SSRTKLL--VDITGSKEVPYLIDPNTSTQIG 253 (273)
Q Consensus 192 ~ly~~~~s~~~~~v~~~L~e~gi~y~~~~v~~~----------~~~~~~~--~~~~~~~~VP~l~d~~~~~~l~ 253 (273)
++|....||-|...-+.|+..+++|..+++-.. ...+++| .+-++.-.+|+|..+++.+.+.
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl~ 78 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVLG 78 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEEe
Confidence 678888999999988999999999999988321 1234555 4456777899987666665553
No 232
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=87.16 E-value=0.88 Score=34.49 Aligned_cols=39 Identities=13% Similarity=0.177 Sum_probs=32.1
Q ss_pred hhhhccCCchHHHHHHHHHhcCCceEEEEcCCCCCCchh
Q 024026 192 ELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKL 230 (273)
Q Consensus 192 ~ly~~~~s~~~~~v~~~L~e~gi~y~~~~v~~~~~~~~~ 230 (273)
++|+...|..|++....|.++|++|.++++.......++
T Consensus 2 ~iy~~~~C~~crka~~~L~~~~i~~~~~di~~~p~s~~e 40 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEARGVAYTFHDYRKDGLDAAT 40 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHcCCCeEEEecccCCCCHHH
Confidence 568888999999999999999999999998655433333
No 233
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=87.06 E-value=2.7 Score=32.31 Aligned_cols=60 Identities=13% Similarity=0.217 Sum_probs=34.7
Q ss_pred ceEEEecCCCchHHHHHHHHHH------cCCceEEEECCCCChhhHHHHHHhCCCC-cccEEEeCC-CCcc
Q 024026 69 RLQLFEFEACPFCRRVREAITE------LDLSVEVFPCPKGSIRHREMVRRLGGKE-QFPFLIDPN-TGVS 131 (273)
Q Consensus 69 ~l~Ly~~~~~p~~~~vr~~L~e------~~l~~~~~~v~~~~~~~~~~~~~~~p~~-~vP~L~d~~-~g~~ 131 (273)
-+..|+.+||+.|++..-.+.+ .+..|..++++.......+ +.+..+ .+|.++--+ +|..
T Consensus 22 VlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~---~~~~~g~~vPt~~f~~~~Gk~ 89 (117)
T cd02959 22 LMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDE---EFSPDGGYIPRILFLDPSGDV 89 (117)
T ss_pred EEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhh---hcccCCCccceEEEECCCCCC
Confidence 3455667899999988766655 3445666666654321122 233333 499885432 5553
No 234
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=86.85 E-value=2.6 Score=32.37 Aligned_cols=71 Identities=17% Similarity=0.256 Sum_probs=46.0
Q ss_pred CCchHHHHHHHHHhcC---CceEEEEcCCCCCCchhHHhhcC--CCcccEEEcCCCC------------eeeccHHHHHH
Q 024026 198 NNPYARIVREALCELE---LPYILQNVGDGSSRTKLLVDITG--SKEVPYLIDPNTS------------TQIGDYKKILS 260 (273)
Q Consensus 198 ~s~~~~~v~~~L~e~g---i~y~~~~v~~~~~~~~~~~~~~~--~~~VP~l~d~~~~------------~~l~eS~~I~~ 260 (273)
.|+.|..+|-.|+..- -.-.++.|+... -|.++++.-+ +...|+|+-+++. ..|.+...|++
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~R-PR~~vi~llGE~~QslPvLVL~~~~~~~~~~~~~~~~rfi~d~~~I~~ 101 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFPR-PRQAVIALLGEANQSLPVLVLADGAPSPDDAGSHGGRRFIDDPRRILR 101 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCCC-chHHHHHHhChhccCCCEEEeCCCCCCcccccccCCeEEeCCHHHHHH
Confidence 5888888888876431 122333444332 3445655443 5678998844322 36889999999
Q ss_pred HHHhhcCCC
Q 024026 261 YLFQSYSAS 269 (273)
Q Consensus 261 yL~~~y~~~ 269 (273)
||.++||-.
T Consensus 102 ~La~r~g~p 110 (112)
T PF11287_consen 102 YLAERHGFP 110 (112)
T ss_pred HHHHHcCCC
Confidence 999999864
No 235
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=86.50 E-value=2.8 Score=32.77 Aligned_cols=66 Identities=9% Similarity=0.244 Sum_probs=38.3
Q ss_pred eEEEecCCCchHHHHH-------HHHHHcCCceEEEECCCCCh--hhH---HHHHHhCCCCcccEEEeC-CCCccccCh
Q 024026 70 LQLFEFEACPFCRRVR-------EAITELDLSVEVFPCPKGSI--RHR---EMVRRLGGKEQFPFLIDP-NTGVSMYES 135 (273)
Q Consensus 70 l~Ly~~~~~p~~~~vr-------~~L~e~~l~~~~~~v~~~~~--~~~---~~~~~~~p~~~vP~L~d~-~~g~~l~ES 135 (273)
+..++..+|++|++.. .+...++-.|..+.++..+. ... +.....++...+|+++-- .+|..++.+
T Consensus 19 ll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~~G~~~~~~ 97 (124)
T cd02955 19 FLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTPDLKPFFGG 97 (124)
T ss_pred EEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEEeee
Confidence 3445667999999774 23344455677776654321 111 112224567789988432 368887776
No 236
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=86.25 E-value=0.92 Score=35.20 Aligned_cols=36 Identities=14% Similarity=0.128 Sum_probs=31.2
Q ss_pred hhhhhhccCCchHHHHHHHHHhcCCceEEEEcCCCC
Q 024026 190 KLELFSYENNPYARIVREALCELELPYILQNVGDGS 225 (273)
Q Consensus 190 ~i~ly~~~~s~~~~~v~~~L~e~gi~y~~~~v~~~~ 225 (273)
++++|+...|..|+++...|.++|++|.++++....
T Consensus 2 ~itiy~~p~C~t~rka~~~L~~~gi~~~~~~y~~~~ 37 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLEEHGIEYTFIDYLKTP 37 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCCCcEEEEeecCC
Confidence 467899999999999999999999999999875433
No 237
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=86.18 E-value=2 Score=41.81 Aligned_cols=73 Identities=12% Similarity=0.150 Sum_probs=48.6
Q ss_pred CCceEEEecCCCchHHHHHHHHHHcC-----CceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCccccC----hHH
Q 024026 67 PTRLQLFEFEACPFCRRVREAITELD-----LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYE----SGD 137 (273)
Q Consensus 67 ~~~l~Ly~~~~~p~~~~vr~~L~e~~-----l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~~l~E----S~a 137 (273)
+-.+++|..+.||||..++.++.++- |..+.++. ...++.. +...-..||.++. +|..+++ -..
T Consensus 117 ~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~----~~~~~~~-~~~~v~~VP~~~i--~~~~~~~g~~~~~~ 189 (517)
T PRK15317 117 DFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDG----ALFQDEV-EARNIMAVPTVFL--NGEEFGQGRMTLEE 189 (517)
T ss_pred CeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEc----hhCHhHH-HhcCCcccCEEEE--CCcEEEecCCCHHH
Confidence 34688999999999999888877663 44444432 2346655 5566779999986 4555544 345
Q ss_pred HHHHHHHHh
Q 024026 138 IVNYLFQQY 146 (273)
Q Consensus 138 I~~YL~~~~ 146 (273)
+++.|.+..
T Consensus 190 ~~~~~~~~~ 198 (517)
T PRK15317 190 ILAKLDTGA 198 (517)
T ss_pred HHHHHhccc
Confidence 666666543
No 238
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=85.79 E-value=1.9 Score=42.41 Aligned_cols=57 Identities=12% Similarity=0.169 Sum_probs=41.0
Q ss_pred ceEEEecCCCchHHHHHHHH----HHc-CCceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCccc
Q 024026 69 RLQLFEFEACPFCRRVREAI----TEL-DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSM 132 (273)
Q Consensus 69 ~l~Ly~~~~~p~~~~vr~~L----~e~-~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~~l 132 (273)
.+++|..++||+|..+..++ .+. +|.++.+++... ++.. +...-..||.++. +|..+
T Consensus 479 ~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~----~~~~-~~~~v~~vP~~~i--~~~~~ 540 (555)
T TIGR03143 479 NIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHF----PDLK-DEYGIMSVPAIVV--DDQQV 540 (555)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECccc----HHHH-HhCCceecCEEEE--CCEEE
Confidence 58899899999998777644 444 688888887532 4443 5666889999986 45443
No 239
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=85.12 E-value=1.1 Score=34.50 Aligned_cols=35 Identities=3% Similarity=-0.052 Sum_probs=30.0
Q ss_pred hhhhhccCCchHHHHHHHHHhcCCceEEEEcCCCC
Q 024026 191 LELFSYENNPYARIVREALCELELPYILQNVGDGS 225 (273)
Q Consensus 191 i~ly~~~~s~~~~~v~~~L~e~gi~y~~~~v~~~~ 225 (273)
+++|+.+.|..|++....|.++|++|.++++....
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~~~~p 36 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAAGHEVEVRDLLTEP 36 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCcEEeehhcCC
Confidence 45788899999999999999999999999985433
No 240
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=84.45 E-value=5.9 Score=31.60 Aligned_cols=78 Identities=15% Similarity=0.216 Sum_probs=51.6
Q ss_pred CCCceEEEecCCCchHHHHHHHHHHcCCceEEEECCCCChhhHHHHHHhCCCCc---ccEEEeCCCCccccChHHHHHHH
Q 024026 66 SPTRLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQ---FPFLIDPNTGVSMYESGDIVNYL 142 (273)
Q Consensus 66 ~~~~l~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~~~~~~~~~~~~~~p~~~---vP~L~d~~~g~~l~ES~aI~~YL 142 (273)
+...+.+|. -.||+|....-+|...+-.-.++..+..++.....+ +..|... .=++.+ .+|....+|.|+++-+
T Consensus 7 ~p~~vvlyD-G~C~lC~~~vrfLi~~D~~~~i~f~~~q~e~g~~~l-~~~~l~~~~~~s~~~~-~~g~~~~~sdA~~~i~ 83 (137)
T COG3011 7 KPDLVVLYD-GVCPLCDGWVRFLIRRDQGGRIRFAALQSEPGQALL-EAAGLDPEDVDSVLLV-EAGQLLVGSDAAIRIL 83 (137)
T ss_pred CCCEEEEEC-CcchhHHHHHHHHHHhccCCcEEEEeccCchhhhHH-hhcCCChhhhheeeEe-cCCceEeccHHHHHHH
Confidence 344555665 469999999999999988877776654433444444 4444321 112233 3789999999999988
Q ss_pred HHHh
Q 024026 143 FQQY 146 (273)
Q Consensus 143 ~~~~ 146 (273)
...-
T Consensus 84 ~~L~ 87 (137)
T COG3011 84 RLLP 87 (137)
T ss_pred HHCC
Confidence 8764
No 241
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=84.18 E-value=6.2 Score=28.07 Aligned_cols=68 Identities=16% Similarity=0.200 Sum_probs=43.7
Q ss_pred hhhhhccCCchHHHHHHHHHhcC----CceEEEEcCCCCCCchhHHhhcCCCcccEEEcCCC-----Ceee---ccHHHH
Q 024026 191 LELFSYENNPYARIVREALCELE----LPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNT-----STQI---GDYKKI 258 (273)
Q Consensus 191 i~ly~~~~s~~~~~v~~~L~e~g----i~y~~~~v~~~~~~~~~~~~~~~~~~VP~l~d~~~-----~~~l---~eS~~I 258 (273)
+.+|+.+.|..|..+...|.... +.+..++|. ..+++.+..+. .||+|..++. ...+ ++...+
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~----~d~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d~~~L 76 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDID----EDPELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFDEEQL 76 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETT----TTHHHHHHSCT-STSEEEETT-GGGCTSEEEESSB-HHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECC----CCHHHHHHhcC-CCCEEEEcCcccccccceeCCCCCHHHH
Confidence 45788899999999999997532 345555655 33557777774 8999876541 2222 466777
Q ss_pred HHHHH
Q 024026 259 LSYLF 263 (273)
Q Consensus 259 ~~yL~ 263 (273)
.++|.
T Consensus 77 ~~~L~ 81 (81)
T PF05768_consen 77 RAWLE 81 (81)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 77663
No 242
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=84.09 E-value=2.3 Score=28.69 Aligned_cols=52 Identities=19% Similarity=0.268 Sum_probs=36.3
Q ss_pred hhhhhccCCchHHHHHHHHHhc-----CCceEEEEcCCCCCCchhHHhhcCCCcccEEEcC
Q 024026 191 LELFSYENNPYARIVREALCEL-----ELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDP 246 (273)
Q Consensus 191 i~ly~~~~s~~~~~v~~~L~e~-----gi~y~~~~v~~~~~~~~~~~~~~~~~~VP~l~d~ 246 (273)
+.+|..+.|++|..++..|.+. +++|...+++. .+++.+..+...+|.+..+
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~----~~~l~~~~~i~~vPti~i~ 59 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAE----FPDLADEYGVMSVPAIVIN 59 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEccc----CHhHHHHcCCcccCEEEEC
Confidence 3466778899999988888654 46666666543 2445666777889988764
No 243
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=83.73 E-value=0.78 Score=44.60 Aligned_cols=72 Identities=15% Similarity=0.293 Sum_probs=47.3
Q ss_pred CCceEEEecCCCchHHHHHHHHHHcC-----CceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCccccCh----HH
Q 024026 67 PTRLQLFEFEACPFCRRVREAITELD-----LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYES----GD 137 (273)
Q Consensus 67 ~~~l~Ly~~~~~p~~~~vr~~L~e~~-----l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~~l~ES----~a 137 (273)
+-.+++|..+.||||..|..++.++. |..+.++. ...+++. +...-..||.++. +|..+++. .+
T Consensus 118 ~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~----~~~~~~~-~~~~v~~VP~~~i--~~~~~~~g~~~~~~ 190 (515)
T TIGR03140 118 PLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDG----ALFQDEV-EALGIQGVPAVFL--NGEEFHNGRMDLAE 190 (515)
T ss_pred CeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEc----hhCHHHH-HhcCCcccCEEEE--CCcEEEecCCCHHH
Confidence 34588999999999999988887764 44444332 2346665 5556779999986 45555553 34
Q ss_pred HHHHHHHH
Q 024026 138 IVNYLFQQ 145 (273)
Q Consensus 138 I~~YL~~~ 145 (273)
++..|.+.
T Consensus 191 ~~~~l~~~ 198 (515)
T TIGR03140 191 LLEKLEET 198 (515)
T ss_pred HHHHHhhc
Confidence 45555444
No 244
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=82.82 E-value=3 Score=36.25 Aligned_cols=27 Identities=15% Similarity=0.544 Sum_probs=21.7
Q ss_pred CCCCceEEEecCCCchHHHHHHHHHHc
Q 024026 65 DSPTRLQLFEFEACPFCRRVREAITEL 91 (273)
Q Consensus 65 ~~~~~l~Ly~~~~~p~~~~vr~~L~e~ 91 (273)
.....+.+|+.+.||||++...-|.++
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~ 132 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDY 132 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHH
Confidence 344568889999999999998877765
No 245
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=82.77 E-value=5.7 Score=29.76 Aligned_cols=54 Identities=24% Similarity=0.495 Sum_probs=32.6
Q ss_pred CceEEEecCCCchHHHHHHHHHHc-------CCceEEEECCCCChhhHHHHHHhCCCCcccEEE
Q 024026 68 TRLQLFEFEACPFCRRVREAITEL-------DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLI 124 (273)
Q Consensus 68 ~~l~Ly~~~~~p~~~~vr~~L~e~-------~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~ 124 (273)
.-+..|..+|||.|++..-.+.++ ++.+-.++++.. ......+..+-..+|.++
T Consensus 23 ~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~---~~~~~~~~~~v~~~Pti~ 83 (109)
T cd02993 23 STLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGE---QREFAKEELQLKSFPTIL 83 (109)
T ss_pred CEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCcc---chhhHHhhcCCCcCCEEE
Confidence 356677789999999877666554 233334455432 123332345677899885
No 246
>PTZ00051 thioredoxin; Provisional
Probab=82.57 E-value=6.4 Score=28.43 Aligned_cols=57 Identities=16% Similarity=0.167 Sum_probs=35.5
Q ss_pred ceEEEecCCCchHHHHHHHHHHc-----CCceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCc
Q 024026 69 RLQLFEFEACPFCRRVREAITEL-----DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGV 130 (273)
Q Consensus 69 ~l~Ly~~~~~p~~~~vr~~L~e~-----~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~ 130 (273)
-+..|..+||+.|+...-.+..+ ++.+-.++++. ..+.. +...-..+|+++--.+|.
T Consensus 21 vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~----~~~~~-~~~~v~~~Pt~~~~~~g~ 82 (98)
T PTZ00051 21 VIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDE----LSEVA-EKENITSMPTFKVFKNGS 82 (98)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcc----hHHHH-HHCCCceeeEEEEEeCCe
Confidence 35566678999999998877664 44444444442 23333 445567899875434564
No 247
>PHA02278 thioredoxin-like protein
Probab=82.36 E-value=6.2 Score=29.65 Aligned_cols=62 Identities=15% Similarity=0.260 Sum_probs=36.4
Q ss_pred eEEEecCCCchHHHHHHHHHHc----C--CceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCccc
Q 024026 70 LQLFEFEACPFCRRVREAITEL----D--LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSM 132 (273)
Q Consensus 70 l~Ly~~~~~p~~~~vr~~L~e~----~--l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~~l 132 (273)
+.-|..+||+.|+...-.++++ + +++..++++......++ +.+...-..+|+++-=.+|..+
T Consensus 18 vV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~-l~~~~~I~~iPT~i~fk~G~~v 85 (103)
T PHA02278 18 IVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREK-AVKLFDIMSTPVLIGYKDGQLV 85 (103)
T ss_pred EEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHH-HHHHCCCccccEEEEEECCEEE
Confidence 4455568999999887666554 2 34555566653211233 3345556689998653456543
No 248
>PRK10853 putative reductase; Provisional
Probab=82.21 E-value=1.7 Score=33.67 Aligned_cols=34 Identities=15% Similarity=0.189 Sum_probs=29.4
Q ss_pred hhhhhccCCchHHHHHHHHHhcCCceEEEEcCCC
Q 024026 191 LELFSYENNPYARIVREALCELELPYILQNVGDG 224 (273)
Q Consensus 191 i~ly~~~~s~~~~~v~~~L~e~gi~y~~~~v~~~ 224 (273)
+++|+...|..|++....|.++|++|.++++.+.
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~~k~ 35 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQGIDYRFHDYRVD 35 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHcCCCcEEeehccC
Confidence 5688888999999999999999999999987543
No 249
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=81.81 E-value=9.1 Score=27.36 Aligned_cols=56 Identities=18% Similarity=0.254 Sum_probs=32.4
Q ss_pred eEEEecCCCchHHHHHHHHHHc----C--CceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCc
Q 024026 70 LQLFEFEACPFCRRVREAITEL----D--LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGV 130 (273)
Q Consensus 70 l~Ly~~~~~p~~~~vr~~L~e~----~--l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~ 130 (273)
+..|..++|+.|+.+...+.++ + +.+-.++++.. ++.. +...-..+|.++--.+|.
T Consensus 18 vi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~----~~~~-~~~~v~~~P~~~~~~~g~ 79 (101)
T TIGR01068 18 LVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDEN----PDIA-AKYGIRSIPTLLLFKNGK 79 (101)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCC----HHHH-HHcCCCcCCEEEEEeCCc
Confidence 4455567999999887776553 2 33333444432 3333 444556899875433443
No 250
>KOG3028 consensus Translocase of outer mitochondrial membrane complex, subunit TOM37/Metaxin 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.80 E-value=17 Score=33.03 Aligned_cols=59 Identities=15% Similarity=0.179 Sum_probs=46.0
Q ss_pred CCchHHHHHHHHHHcCCceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCccccChHHHHHHHHHH
Q 024026 77 ACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQ 145 (273)
Q Consensus 77 ~~p~~~~vr~~L~e~~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~~l~ES~aI~~YL~~~ 145 (273)
.|+.|..|.+.+...+-+.+++.... . -.+|.|++|+|++. +|..+..-..|+.||...
T Consensus 16 id~~sL~~l~y~kl~~~~l~v~~ssN-~--------~~s~sg~LP~l~~~-ng~~va~~~~iv~~L~k~ 74 (313)
T KOG3028|consen 16 IDPDSLAALIYLKLAGAPLKVVVSSN-P--------WRSPSGKLPYLITD-NGTKVAGPVKIVQFLKKN 74 (313)
T ss_pred cChhHHHHHHHHHHhCCCceeEeecC-C--------CCCCCCCCCeEEec-CCceeccHHHHHHHHHHh
Confidence 48899999999998885555443321 1 14578899999984 788999999999999883
No 251
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=81.37 E-value=5.2 Score=30.63 Aligned_cols=20 Identities=30% Similarity=0.854 Sum_probs=15.1
Q ss_pred CCceEEEecCCCchHHHHHH
Q 024026 67 PTRLQLFEFEACPFCRRVRE 86 (273)
Q Consensus 67 ~~~l~Ly~~~~~p~~~~vr~ 86 (273)
...+..|..+|||+|++...
T Consensus 15 k~vlv~f~a~wC~~C~~~~~ 34 (125)
T cd02951 15 KPLLLLFSQPGCPYCDKLKR 34 (125)
T ss_pred CcEEEEEeCCCCHHHHHHHH
Confidence 34566777889999998764
No 252
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=81.21 E-value=4.3 Score=35.73 Aligned_cols=25 Identities=20% Similarity=0.642 Sum_probs=20.0
Q ss_pred CCCceEEEecCCCchHHHHHHHHHH
Q 024026 66 SPTRLQLFEFEACPFCRRVREAITE 90 (273)
Q Consensus 66 ~~~~l~Ly~~~~~p~~~~vr~~L~e 90 (273)
.+..+.+|+-+.||||++....+.+
T Consensus 117 ak~~I~vFtDp~CpyC~kl~~~l~~ 141 (251)
T PRK11657 117 APRIVYVFADPNCPYCKQFWQQARP 141 (251)
T ss_pred CCeEEEEEECCCChhHHHHHHHHHH
Confidence 3456788888999999999887654
No 253
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=80.69 E-value=4.3 Score=29.29 Aligned_cols=60 Identities=15% Similarity=0.072 Sum_probs=36.7
Q ss_pred ceEEEecCCCchHHHHHHHHHHc----CCceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCcc
Q 024026 69 RLQLFEFEACPFCRRVREAITEL----DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVS 131 (273)
Q Consensus 69 ~l~Ly~~~~~p~~~~vr~~L~e~----~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~~ 131 (273)
-+..|..++|+.|++....|+++ ...+....++... .++.. +...-..+|+++--++|..
T Consensus 17 v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~--~~~~~-~~~~i~~~Pt~~~~~~g~~ 80 (97)
T cd02984 17 LVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEE--LPEIS-EKFEITAVPTFVFFRNGTI 80 (97)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEcccc--CHHHH-HhcCCccccEEEEEECCEE
Confidence 34566678999999998877764 2345555555432 23444 4344667998754345653
No 254
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=80.58 E-value=4.5 Score=33.91 Aligned_cols=25 Identities=20% Similarity=0.667 Sum_probs=21.2
Q ss_pred CCCceEEEecCCCchHHHHHHHHHH
Q 024026 66 SPTRLQLFEFEACPFCRRVREAITE 90 (273)
Q Consensus 66 ~~~~l~Ly~~~~~p~~~~vr~~L~e 90 (273)
.+..+.+|+.+.||||++....+.+
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhh
Confidence 4557888888999999999998875
No 255
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=80.29 E-value=9.9 Score=28.20 Aligned_cols=57 Identities=18% Similarity=0.240 Sum_probs=34.3
Q ss_pred ceEEEecCCCchHHHHHHHHHHc------------CCceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCc
Q 024026 69 RLQLFEFEACPFCRRVREAITEL------------DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGV 130 (273)
Q Consensus 69 ~l~Ly~~~~~p~~~~vr~~L~e~------------~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~ 130 (273)
-+..|..+||++|+...-.++++ .+.+-.++++.. ++.. +...-..+|.|+--.+|.
T Consensus 21 vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~----~~l~-~~~~v~~~Ptl~~~~~g~ 89 (108)
T cd02996 21 VLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKE----SDIA-DRYRINKYPTLKLFRNGM 89 (108)
T ss_pred EEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCC----HHHH-HhCCCCcCCEEEEEeCCc
Confidence 35566678999999887766532 133334455532 3333 555677899886323454
No 256
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=79.55 E-value=8.4 Score=29.28 Aligned_cols=60 Identities=12% Similarity=0.038 Sum_probs=37.6
Q ss_pred ceEEEecCCCchHHHHHHHHHHc-----CCceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCcccc
Q 024026 69 RLQLFEFEACPFCRRVREAITEL-----DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMY 133 (273)
Q Consensus 69 ~l~Ly~~~~~p~~~~vr~~L~e~-----~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~~l~ 133 (273)
-+..|..++|+.|+.+.-.|+++ ++.+-.++++. .++ +.+...-..+|+++-=.+|..+.
T Consensus 25 vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~----~~~-l~~~~~v~~vPt~l~fk~G~~v~ 89 (113)
T cd02989 25 VVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEK----APF-LVEKLNIKVLPTVILFKNGKTVD 89 (113)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEccc----CHH-HHHHCCCccCCEEEEEECCEEEE
Confidence 44566678999999888888764 34443344433 233 33555677899986534676554
No 257
>PRK10026 arsenate reductase; Provisional
Probab=79.54 E-value=2.2 Score=34.21 Aligned_cols=74 Identities=9% Similarity=0.041 Sum_probs=51.5
Q ss_pred hhhhhhccCCchHHHHHHHHHhcCCceEEEEcCCCCCCc-------------------------------------hhHH
Q 024026 190 KLELFSYENNPYARIVREALCELELPYILQNVGDGSSRT-------------------------------------KLLV 232 (273)
Q Consensus 190 ~i~ly~~~~s~~~~~v~~~L~e~gi~y~~~~v~~~~~~~-------------------------------------~~~~ 232 (273)
.+++|+...|..|++....|.++|++|.++++....... ++++
T Consensus 3 ~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~~~~ppt~~eL~~~l~~~g~~~~~lint~~~~yr~L~~~~~~ls~~e~l 82 (141)
T PRK10026 3 NITIYHNPACGTSRNTLEMIRNSGTEPTIIHYLETPPTRDELVKLIADMGISVRALLRKNVEPYEELGLAEDKFTDDQLI 82 (141)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeeeCCCcCHHHHHHHHHhCCCCHHHHHHcCCchHHHcCCCccCCCHHHHH
Confidence 467899999999999999999999999999874322000 1222
Q ss_pred ---hhcC-CCcccEEEcCCCCeeeccHHHHHHHHH
Q 024026 233 ---DITG-SKEVPYLIDPNTSTQIGDYKKILSYLF 263 (273)
Q Consensus 233 ---~~~~-~~~VP~l~d~~~~~~l~eS~~I~~yL~ 263 (273)
..+| .-+-|+++++++.+...-+..|.++|.
T Consensus 83 ~ll~~~P~LIKRPIi~~~~~a~i~Rp~e~v~~~l~ 117 (141)
T PRK10026 83 DFMLQHPILINRPIVVTPLGTRLCRPSEVVLEILP 117 (141)
T ss_pred HHHHhCccceeCcEEEcCCCeEEECCHHHHHHHhc
Confidence 2233 236688887655566677888888883
No 258
>PHA03075 glutaredoxin-like protein; Provisional
Probab=79.50 E-value=2.5 Score=32.59 Aligned_cols=51 Identities=24% Similarity=0.309 Sum_probs=38.8
Q ss_pred CCceEEEecCCCchHHHHHHHHHHcCCceEEEECCCCChhhHHHHHHhCCCCcccEEEe
Q 024026 67 PTRLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLID 125 (273)
Q Consensus 67 ~~~l~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d 125 (273)
++.+.|++.|.|+-|+-+..+|.++.=.|++..|+.-+ ++ .. .++|=+|-.
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~ilrVNIlS-----fF-sK--~g~v~~lg~ 52 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYDILRVNILS-----FF-SK--DGQVKVLGM 52 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhccccEEEEEeee-----ee-cc--CCceEEEec
Confidence 35689999999999999999999999999998776432 23 22 346666654
No 259
>PRK09381 trxA thioredoxin; Provisional
Probab=79.30 E-value=18 Score=26.69 Aligned_cols=58 Identities=21% Similarity=0.231 Sum_probs=33.1
Q ss_pred ceEEEecCCCchHHHHHHHHHHc----C--CceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCcc
Q 024026 69 RLQLFEFEACPFCRRVREAITEL----D--LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVS 131 (273)
Q Consensus 69 ~l~Ly~~~~~p~~~~vr~~L~e~----~--l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~~ 131 (273)
-+..|..++||.|+...-.++++ + +.+-.++++.. +... +..+-..+|+++--++|..
T Consensus 24 vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~----~~~~-~~~~v~~~Pt~~~~~~G~~ 87 (109)
T PRK09381 24 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN----PGTA-PKYGIRGIPTLLLFKNGEV 87 (109)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCC----hhHH-HhCCCCcCCEEEEEeCCeE
Confidence 34555667999999887666543 2 33333444432 2333 3445678998854345653
No 260
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=79.30 E-value=22 Score=28.19 Aligned_cols=60 Identities=12% Similarity=0.226 Sum_probs=34.3
Q ss_pred eEEEecCCCchHHHHHHHHHHc------CCceEEEECCCCChhhHHHHHHhCCCCcccEEEeC-CCCccc
Q 024026 70 LQLFEFEACPFCRRVREAITEL------DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDP-NTGVSM 132 (273)
Q Consensus 70 l~Ly~~~~~p~~~~vr~~L~e~------~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~-~~g~~l 132 (273)
+..|..+||+.|+...-.|.++ ++.+..++++.. ...+.. +...-..+|.++-- .+|..+
T Consensus 24 vV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~--~~~~~~-~~~~V~~iPt~v~~~~~G~~v 90 (142)
T cd02950 24 LVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNP--KWLPEI-DRYRVDGIPHFVFLDREGNEE 90 (142)
T ss_pred EEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCc--ccHHHH-HHcCCCCCCEEEEECCCCCEE
Confidence 4455567999999887776654 233444455432 223333 45556689977532 256543
No 261
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=78.76 E-value=8.9 Score=27.80 Aligned_cols=60 Identities=18% Similarity=0.314 Sum_probs=33.6
Q ss_pred CceEEEecCCCchHHHHHHHHHHc----C----CceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCc
Q 024026 68 TRLQLFEFEACPFCRRVREAITEL----D----LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGV 130 (273)
Q Consensus 68 ~~l~Ly~~~~~p~~~~vr~~L~e~----~----l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~ 130 (273)
.-+.+|..+|||.|+...-.+.++ . +.+-.++++.. ..+... +..+-..+|.++.-.+|.
T Consensus 19 ~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~--~~~~~~-~~~~i~~~Pt~~~~~~g~ 86 (104)
T cd02997 19 HVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKP--EHDALK-EEYNVKGFPTFKYFENGK 86 (104)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCC--ccHHHH-HhCCCccccEEEEEeCCC
Confidence 345677778999999886444322 2 22333455432 234444 444566899885433454
No 262
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=78.72 E-value=2.6 Score=33.14 Aligned_cols=33 Identities=9% Similarity=0.007 Sum_probs=28.5
Q ss_pred hhhhhccCCchHHHHHHHHHhcCCceEEEEcCC
Q 024026 191 LELFSYENNPYARIVREALCELELPYILQNVGD 223 (273)
Q Consensus 191 i~ly~~~~s~~~~~v~~~L~e~gi~y~~~~v~~ 223 (273)
+++|+...|..|++....|.++|++|.++++.+
T Consensus 3 i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~~ 35 (126)
T TIGR01616 3 IIFYEKPGCANNARQKAALKASGHDVEVQDILK 35 (126)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCCcEEEeccC
Confidence 467888889999999999999999999998743
No 263
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=77.59 E-value=11 Score=27.95 Aligned_cols=60 Identities=12% Similarity=0.150 Sum_probs=35.0
Q ss_pred eEEEecCCCchHHHHHHHHHHc-----CCceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCcc
Q 024026 70 LQLFEFEACPFCRRVREAITEL-----DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVS 131 (273)
Q Consensus 70 l~Ly~~~~~p~~~~vr~~L~e~-----~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~~ 131 (273)
+..|..+||+.|+...-.|+++ ++.+-.++++... ...++. +...-..+|.++--.+|..
T Consensus 19 vv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~-~~~~l~-~~~~V~~~Pt~~~~~~G~~ 83 (103)
T cd02985 19 VLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDEND-STMELC-RREKIIEVPHFLFYKDGEK 83 (103)
T ss_pred EEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCCh-HHHHHH-HHcCCCcCCEEEEEeCCeE
Confidence 4455668999999877777654 3444444544321 123443 4555677998754335653
No 264
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=77.29 E-value=3.5 Score=31.51 Aligned_cols=32 Identities=9% Similarity=-0.013 Sum_probs=27.9
Q ss_pred hhhhccCCchHHHHHHHHHhcCCceEEEEcCC
Q 024026 192 ELFSYENNPYARIVREALCELELPYILQNVGD 223 (273)
Q Consensus 192 ~ly~~~~s~~~~~v~~~L~e~gi~y~~~~v~~ 223 (273)
++|+...|..|++....|.+++++|..+++.+
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~ 33 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEEAGIEPEIVEYLK 33 (112)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCCeEEEeccc
Confidence 56888889999999999999999999998754
No 265
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=74.60 E-value=4.5 Score=31.02 Aligned_cols=40 Identities=8% Similarity=-0.015 Sum_probs=31.6
Q ss_pred hhhhccCCchHHHHHHHHHhcCCceEEEEcCCCCCCchhH
Q 024026 192 ELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLL 231 (273)
Q Consensus 192 ~ly~~~~s~~~~~v~~~L~e~gi~y~~~~v~~~~~~~~~~ 231 (273)
++|+...|..|++....|.+.|++|..+++.+.....+++
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~p~t~~el 41 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLEDKGIEPEVVKYLKNPPTKSEL 41 (114)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCCeEEEeccCCCcCHHHH
Confidence 5688889999999999999999999999986544333333
No 266
>PRK10996 thioredoxin 2; Provisional
Probab=73.33 E-value=28 Score=27.35 Aligned_cols=59 Identities=15% Similarity=0.149 Sum_probs=34.9
Q ss_pred ceEEEecCCCchHHHHHHHHHHc----CCceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCc
Q 024026 69 RLQLFEFEACPFCRRVREAITEL----DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGV 130 (273)
Q Consensus 69 ~l~Ly~~~~~p~~~~vr~~L~e~----~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~ 130 (273)
-+..|+.+||+.|+...-.|.++ +-.+.+..++... .++.. +...-..+|.++--.+|.
T Consensus 55 vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~--~~~l~-~~~~V~~~Ptlii~~~G~ 117 (139)
T PRK10996 55 VVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEA--ERELS-ARFRIRSIPTIMIFKNGQ 117 (139)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCC--CHHHH-HhcCCCccCEEEEEECCE
Confidence 35566678999999876555443 3234444444332 23443 455567899885433565
No 267
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=72.62 E-value=5 Score=28.30 Aligned_cols=32 Identities=25% Similarity=0.504 Sum_probs=22.7
Q ss_pred eEEEecCCCchHHHHHHHHHHc------CCceEEEECC
Q 024026 70 LQLFEFEACPFCRRVREAITEL------DLSVEVFPCP 101 (273)
Q Consensus 70 l~Ly~~~~~p~~~~vr~~L~e~------~l~~~~~~v~ 101 (273)
+.+|..+.||+|+...-.|.++ ++.++.+.+.
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~ 38 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFP 38 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccc
Confidence 4577788999999998888775 3444444544
No 268
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=72.34 E-value=14 Score=28.60 Aligned_cols=59 Identities=14% Similarity=0.111 Sum_probs=30.4
Q ss_pred CCCchHHHHHHHHHH----cC--CceEEEECCCCC-h--hhHHHHHHhCCCC-cccEEEeCCCCccccCh
Q 024026 76 EACPFCRRVREAITE----LD--LSVEVFPCPKGS-I--RHREMVRRLGGKE-QFPFLIDPNTGVSMYES 135 (273)
Q Consensus 76 ~~~p~~~~vr~~L~e----~~--l~~~~~~v~~~~-~--~~~~~~~~~~p~~-~vP~L~d~~~g~~l~ES 135 (273)
+|||.|+.+.-.|++ .. +.+-.++++... + ...++. +...-. .+|+++--.+|..+.|.
T Consensus 38 ~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~-~~~~I~~~iPT~~~~~~~~~l~~~ 106 (119)
T cd02952 38 SWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFR-TDPKLTTGVPTLLRWKTPQRLVED 106 (119)
T ss_pred CCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhH-hccCcccCCCEEEEEcCCceecch
Confidence 799999977655543 33 444444554321 1 123332 222233 79999654455444443
No 269
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=71.83 E-value=14 Score=28.40 Aligned_cols=56 Identities=9% Similarity=0.092 Sum_probs=34.4
Q ss_pred eEEEecCCCchHHHHHHHHHHcCC------ceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCc
Q 024026 70 LQLFEFEACPFCRRVREAITELDL------SVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGV 130 (273)
Q Consensus 70 l~Ly~~~~~p~~~~vr~~L~e~~l------~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~ 130 (273)
+.-|+.+||+.|+...-.|+++-- .+-.++++.. ++. .+...-..+|+++-=.+|.
T Consensus 18 VV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~----~~l-a~~~~V~~iPTf~~fk~G~ 79 (114)
T cd02954 18 VIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEV----PDF-NKMYELYDPPTVMFFFRNK 79 (114)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCC----HHH-HHHcCCCCCCEEEEEECCE
Confidence 445777899999988887766532 2333444432 343 3555667899985433454
No 270
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=71.36 E-value=17 Score=26.66 Aligned_cols=54 Identities=20% Similarity=0.409 Sum_probs=32.1
Q ss_pred ceEEEecCCCchHHHHHHHHHHc----C--CceEEEECCCCChhhHHHHHHhCCCCcccEEEe
Q 024026 69 RLQLFEFEACPFCRRVREAITEL----D--LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLID 125 (273)
Q Consensus 69 ~l~Ly~~~~~p~~~~vr~~L~e~----~--l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d 125 (273)
.+..|..+||+.|+...-.++++ + +.+-.++++.. ..++.. +...-..+|.++-
T Consensus 21 ~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~--~~~~~~-~~~~i~~~Pt~~~ 80 (109)
T cd03002 21 TLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDED--KNKPLC-GKYGVQGFPTLKV 80 (109)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCcc--ccHHHH-HHcCCCcCCEEEE
Confidence 56667778999999876655554 2 22333455432 123443 4455678998853
No 271
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=71.12 E-value=12 Score=30.59 Aligned_cols=35 Identities=23% Similarity=0.355 Sum_probs=24.4
Q ss_pred ceEEEe-cCCCchHH-------HHHHHHHHcCCceEEEECCCC
Q 024026 69 RLQLFE-FEACPFCR-------RVREAITELDLSVEVFPCPKG 103 (273)
Q Consensus 69 ~l~Ly~-~~~~p~~~-------~vr~~L~e~~l~~~~~~v~~~ 103 (273)
-+.||. ..|||.|| ++-..+...+-++|++.|..+
T Consensus 35 vV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D 77 (157)
T KOG2501|consen 35 VVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSD 77 (157)
T ss_pred EEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecC
Confidence 345554 46899997 445556666778999988654
No 272
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=69.29 E-value=6.8 Score=30.55 Aligned_cols=24 Identities=13% Similarity=0.414 Sum_probs=18.5
Q ss_pred CCceEEEecCCCchHHHHHHHHHH
Q 024026 67 PTRLQLFEFEACPFCRRVREAITE 90 (273)
Q Consensus 67 ~~~l~Ly~~~~~p~~~~vr~~L~e 90 (273)
+..++.|..+.||+|++....+..
T Consensus 6 ~~~i~~f~D~~Cp~C~~~~~~l~~ 29 (154)
T cd03023 6 DVTIVEFFDYNCGYCKKLAPELEK 29 (154)
T ss_pred CEEEEEEECCCChhHHHhhHHHHH
Confidence 446778888899999998766654
No 273
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=69.13 E-value=19 Score=27.05 Aligned_cols=67 Identities=18% Similarity=0.287 Sum_probs=38.6
Q ss_pred cCCCchHHHHHHHHHHcCC--ceEEEECCCCChhhHHHHH--HhCC--CCcccEEEeCCCCc-cccChHHHHHHHHHH
Q 024026 75 FEACPFCRRVREAITELDL--SVEVFPCPKGSIRHREMVR--RLGG--KEQFPFLIDPNTGV-SMYESGDIVNYLFQQ 145 (273)
Q Consensus 75 ~~~~p~~~~vr~~L~e~~l--~~~~~~v~~~~~~~~~~~~--~~~p--~~~vP~L~d~~~g~-~l~ES~aI~~YL~~~ 145 (273)
-..||+|.+....+..++- .++.+++... ...+.+. .+.+ ..+.-.+++ +|. ....+.|++.-+...
T Consensus 4 Dg~C~lC~~~~~~l~~~d~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~--~g~~~~~G~~A~~~l~~~~ 77 (114)
T PF04134_consen 4 DGDCPLCRREVRFLRRRDRGGRLRFVDIQSE--PDQALLASYGISPEDADSRLHLID--DGERVYRGSDAVLRLLRRL 77 (114)
T ss_pred CCCCHhHHHHHHHHHhcCCCCCEEEEECCCh--hhhhHHHhcCcCHHHHcCeeEEec--CCCEEEEcHHHHHHHHHHc
Confidence 3469999999999999876 4555555221 1111111 1111 112333332 565 899999998876553
No 274
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=69.08 E-value=24 Score=25.91 Aligned_cols=58 Identities=10% Similarity=0.064 Sum_probs=32.2
Q ss_pred ceEEEecCCCchHHHHHHHHHHc----C-CceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCc
Q 024026 69 RLQLFEFEACPFCRRVREAITEL----D-LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGV 130 (273)
Q Consensus 69 ~l~Ly~~~~~p~~~~vr~~L~e~----~-l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~ 130 (273)
-+..|..+||+.|+...-.+..+ + -...+..++.+. .+.. +...-..+|+++--.+|.
T Consensus 20 vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d~---~~~~-~~~~v~~~Pt~~~~~~g~ 82 (102)
T cd02948 20 TVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEADT---IDTL-KRYRGKCEPTFLFYKNGE 82 (102)
T ss_pred EEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCCC---HHHH-HHcCCCcCcEEEEEECCE
Confidence 34566678999999887666543 2 112233333222 2333 455577889774333564
No 275
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=68.70 E-value=6.8 Score=28.22 Aligned_cols=52 Identities=15% Similarity=0.287 Sum_probs=31.1
Q ss_pred CceEEEecCCCchHHHHHHHHHHcC--------CceEEEECCCCChhhHHHHHHhCCCCcccEEE
Q 024026 68 TRLQLFEFEACPFCRRVREAITELD--------LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLI 124 (273)
Q Consensus 68 ~~l~Ly~~~~~p~~~~vr~~L~e~~--------l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~ 124 (273)
..+.+|..++|+.|+.....++... +.+-.++++. .++.. +..+-..+|.+.
T Consensus 15 ~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~----~~~~~-~~~~i~~~P~~~ 74 (102)
T TIGR01126 15 DVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATA----EKDLA-SRFGVSGFPTIK 74 (102)
T ss_pred cEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccc----hHHHH-HhCCCCcCCEEE
Confidence 3467888899999998766664432 2222233332 23333 445567899883
No 276
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=68.20 E-value=24 Score=25.76 Aligned_cols=52 Identities=15% Similarity=0.252 Sum_probs=31.0
Q ss_pred ceEEEecCCCchHHHHHHHHHHcC------CceEEEECCCCChhhHHHHHHhCCCCcccEEEe
Q 024026 69 RLQLFEFEACPFCRRVREAITELD------LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLID 125 (273)
Q Consensus 69 ~l~Ly~~~~~p~~~~vr~~L~e~~------l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d 125 (273)
-+..|..+||+.|++..-.++++- +.+-.++++. .++.. +...-..+|.++-
T Consensus 22 v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~----~~~~~-~~~~i~~~Pt~~~ 79 (104)
T cd03004 22 WLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQK----YESLC-QQANIRAYPTIRL 79 (104)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCc----hHHHH-HHcCCCcccEEEE
Confidence 355666789999998766665442 3333344443 23333 4456678998854
No 277
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=67.63 E-value=19 Score=27.49 Aligned_cols=53 Identities=11% Similarity=0.076 Sum_probs=31.3
Q ss_pred ceEEEecCCCchHHHHHHHHHHcC------CceEEEECCCCChhhHHHHHHhCCCCcccEEEe
Q 024026 69 RLQLFEFEACPFCRRVREAITELD------LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLID 125 (273)
Q Consensus 69 ~l~Ly~~~~~p~~~~vr~~L~e~~------l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d 125 (273)
-+..|+.+||+.|+...-.++++. +.+-.++++.. .+...+...-..+|.|.-
T Consensus 32 vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~----~~l~~~~~~I~~~PTl~l 90 (113)
T cd03006 32 SLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWP----QGKCRKQKHFFYFPVIHL 90 (113)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCC----hHHHHHhcCCcccCEEEE
Confidence 456777899999998877776663 22333455432 222212334457888753
No 278
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=67.27 E-value=17 Score=27.31 Aligned_cols=57 Identities=18% Similarity=0.276 Sum_probs=32.5
Q ss_pred ceEEEecCCCchHHHHHHHHHH----c---CCceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCc
Q 024026 69 RLQLFEFEACPFCRRVREAITE----L---DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGV 130 (273)
Q Consensus 69 ~l~Ly~~~~~p~~~~vr~~L~e----~---~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~ 130 (273)
-+..|..+||+.|+...-.+.+ + ++.+-.++++.. +... +..+-..+|.++--++|.
T Consensus 27 vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~----~~l~-~~~~V~~~Pt~~i~~~g~ 90 (111)
T cd02963 27 YLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHE----RRLA-RKLGAHSVPAIVGIINGQ 90 (111)
T ss_pred EEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEecccc----HHHH-HHcCCccCCEEEEEECCE
Confidence 3556667899999866544432 2 344444454432 2333 445677999886323554
No 279
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=66.11 E-value=20 Score=27.01 Aligned_cols=50 Identities=10% Similarity=0.110 Sum_probs=39.7
Q ss_pred ccCCchHHHHHHHHHhcC-CceEEEEcCCCCCCchhHHhhcCCCcccEEEc
Q 024026 196 YENNPYARIVREALCELE-LPYILQNVGDGSSRTKLLVDITGSKEVPYLID 245 (273)
Q Consensus 196 ~~~s~~~~~v~~~L~e~g-i~y~~~~v~~~~~~~~~~~~~~~~~~VP~l~d 245 (273)
.+.|.+.+.+-..|...| .+|..+||..+..-|+.+.+.+.+-.+|-|.-
T Consensus 27 ~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi 77 (105)
T COG0278 27 FPQCGFSAQAVQILSACGVVDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYV 77 (105)
T ss_pred CCCCCccHHHHHHHHHcCCcceeEEeeccCHHHHhccHhhcCCCCCceeeE
Confidence 356888999999999998 78999999776666666777778888997654
No 280
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=65.15 E-value=11 Score=27.01 Aligned_cols=59 Identities=10% Similarity=0.054 Sum_probs=33.8
Q ss_pred ceEEEecCCCchHHHHHHHHHHcCC----ceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCc
Q 024026 69 RLQLFEFEACPFCRRVREAITELDL----SVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGV 130 (273)
Q Consensus 69 ~l~Ly~~~~~p~~~~vr~~L~e~~l----~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~ 130 (273)
-+..|..+||+.|+...-.++++.- .+.+..++-.. .++.. +..+-..+|+++--.+|.
T Consensus 15 vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~--~~~l~-~~~~i~~~Pt~~~~~~g~ 77 (96)
T cd02956 15 VVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDA--QPQIA-QQFGVQALPTVYLFAAGQ 77 (96)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccC--CHHHH-HHcCCCCCCEEEEEeCCE
Confidence 3455566899999988777765431 23333333222 23333 444567899996433554
No 281
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=64.92 E-value=31 Score=23.66 Aligned_cols=71 Identities=13% Similarity=0.170 Sum_probs=40.4
Q ss_pred hhhhhccCCchHHHHHHHHHh----cCCceEEEEcCCCCCCchhHHhhcCCCcccEEEcCCCCeee---ccHHHHHHHHH
Q 024026 191 LELFSYENNPYARIVREALCE----LELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQI---GDYKKILSYLF 263 (273)
Q Consensus 191 i~ly~~~~s~~~~~v~~~L~e----~gi~y~~~~v~~~~~~~~~~~~~~~~~~VP~l~d~~~~~~l---~eS~~I~~yL~ 263 (273)
+++|....|+.|+.+...|.+ .+..+.+..++.. ..++..+..+...+|.++-+ +...+ .....|.+.|.
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~--~~~~~~~~~~v~~vPt~~~~-g~~~~~G~~~~~~l~~~l~ 79 (82)
T TIGR00411 3 IELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVM--ENPQKAMEYGIMAVPAIVIN-GDVEFIGAPTKEELVEAIK 79 (82)
T ss_pred EEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCc--cCHHHHHHcCCccCCEEEEC-CEEEEecCCCHHHHHHHHH
Confidence 356677889999988777643 3322333333322 22344556677789988763 22222 23556666665
Q ss_pred h
Q 024026 264 Q 264 (273)
Q Consensus 264 ~ 264 (273)
+
T Consensus 80 ~ 80 (82)
T TIGR00411 80 K 80 (82)
T ss_pred h
Confidence 4
No 282
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=64.79 E-value=32 Score=24.88 Aligned_cols=56 Identities=14% Similarity=0.240 Sum_probs=33.0
Q ss_pred ceEEEecCCCchHHHHHHHHHHc-------CCceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCC
Q 024026 69 RLQLFEFEACPFCRRVREAITEL-------DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTG 129 (273)
Q Consensus 69 ~l~Ly~~~~~p~~~~vr~~L~e~-------~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g 129 (273)
.+..|..+|||.|+...-.++++ ++.+-.++++.. ++.. +...-..+|.++--.+|
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~----~~~~-~~~~i~~~Pt~~~~~~g 81 (101)
T cd02994 19 WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQE----PGLS-GRFFVTALPTIYHAKDG 81 (101)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCC----HhHH-HHcCCcccCEEEEeCCC
Confidence 46677788999999877666544 233333444322 2333 44456788988643344
No 283
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=64.69 E-value=7.8 Score=27.44 Aligned_cols=54 Identities=19% Similarity=0.239 Sum_probs=33.1
Q ss_pred CceEEEecCCCchHHHHHHHHHHc------CCceEEEECCCCChhhHHHHHHhCCCCcccEEE
Q 024026 68 TRLQLFEFEACPFCRRVREAITEL------DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLI 124 (273)
Q Consensus 68 ~~l~Ly~~~~~p~~~~vr~~L~e~------~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~ 124 (273)
.-+.+|..++|+.|+...-.+++. +-.+.+..++... ..... +..+-..+|.++
T Consensus 17 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~-~~~~i~~~Pt~~ 76 (101)
T cd02961 17 DVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA--NNDLC-SEYGVRGYPTIK 76 (101)
T ss_pred cEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccc--hHHHH-HhCCCCCCCEEE
Confidence 456777788999999987777553 2234444443322 23433 444567899884
No 284
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=64.28 E-value=27 Score=27.19 Aligned_cols=47 Identities=30% Similarity=0.481 Sum_probs=28.3
Q ss_pred CCchHHHHHHHHHHc-------CCceEEEECCCCChhhHHHHHHhCCCCcccEEEeC
Q 024026 77 ACPFCRRVREAITEL-------DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDP 126 (273)
Q Consensus 77 ~~p~~~~vr~~L~e~-------~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~ 126 (273)
+||.|++-.-.|.++ |+.+..+..+... ...+++. .. ...+|++.|+
T Consensus 40 ~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~-~~~~~~~-~~-~~~~~~~~D~ 93 (146)
T PF08534_consen 40 WCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDP-PVREFLK-KY-GINFPVLSDP 93 (146)
T ss_dssp TSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSH-HHHHHHH-HT-TTTSEEEEET
T ss_pred CCCcchhhhhhHHhhhhhhccCceEEEEecccCCH-HHHHHHH-hh-CCCceEEech
Confidence 799998776555443 4555555554433 3556653 32 3478898874
No 285
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=64.25 E-value=10 Score=28.62 Aligned_cols=38 Identities=16% Similarity=0.099 Sum_probs=24.8
Q ss_pred hhccCCchHHHHHHHHHhcCCceEEEEcCCCCCCchhH
Q 024026 194 FSYENNPYARIVREALCELELPYILQNVGDGSSRTKLL 231 (273)
Q Consensus 194 y~~~~s~~~~~v~~~L~e~gi~y~~~~v~~~~~~~~~~ 231 (273)
|+...|..|+++...|.+.|++|..+++.+......++
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~~~~~d~~k~p~s~~el 38 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIEYEFIDYKKEPLSREEL 38 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT--EEEEETTTS---HHHH
T ss_pred CcCCCCHHHHHHHHHHHHcCCCeEeehhhhCCCCHHHH
Confidence 45567889999999999999999999987644444443
No 286
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=64.09 E-value=9.2 Score=29.75 Aligned_cols=59 Identities=20% Similarity=0.265 Sum_probs=28.1
Q ss_pred CCCchHHHHHH----HHHHcCCceEEEECCCCC---hhhHH-HHHHhCC---CCcccEEEeCCCCccccCh
Q 024026 76 EACPFCRRVRE----AITELDLSVEVFPCPKGS---IRHRE-MVRRLGG---KEQFPFLIDPNTGVSMYES 135 (273)
Q Consensus 76 ~~~p~~~~vr~----~L~e~~l~~~~~~v~~~~---~~~~~-~~~~~~p---~~~vP~L~d~~~g~~l~ES 135 (273)
.|||.|+++.- ++....-...++.|.-|+ ++.+. -+ +.+| ...||+|+--.++..|.|.
T Consensus 36 sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~f-R~~p~~~l~~IPTLi~~~~~~rL~e~ 105 (119)
T PF06110_consen 36 SWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPF-RTDPDLKLKGIPTLIRWETGERLVEE 105 (119)
T ss_dssp BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHH-HH--CC---SSSEEEECTSS-EEEHH
T ss_pred cccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCc-eEcceeeeeecceEEEECCCCccchh
Confidence 48999998874 455433344444443222 22221 12 2333 4679999865455555554
No 287
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=63.86 E-value=32 Score=28.56 Aligned_cols=30 Identities=23% Similarity=0.536 Sum_probs=18.2
Q ss_pred eEEEecCCCchHHHHHHHH----HHcCCceEEEE
Q 024026 70 LQLFEFEACPFCRRVREAI----TELDLSVEVFP 99 (273)
Q Consensus 70 l~Ly~~~~~p~~~~vr~~L----~e~~l~~~~~~ 99 (273)
+..|...+||.|++..-.+ ++.++++..+.
T Consensus 78 vl~F~atwCp~C~~~lp~l~~~~~~~~~~vv~Is 111 (189)
T TIGR02661 78 LLMFTAPSCPVCDKLFPIIKSIARAEETDVVMIS 111 (189)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHhcCCcEEEEe
Confidence 4455567999998764444 33455555444
No 288
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=63.75 E-value=49 Score=26.43 Aligned_cols=54 Identities=20% Similarity=0.299 Sum_probs=26.3
Q ss_pred eEEEecCCCchHHHHHHHHHHc-------CCceEEEECCCCChhhHHHHHHhCCCCcccEEEe
Q 024026 70 LQLFEFEACPFCRRVREAITEL-------DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLID 125 (273)
Q Consensus 70 l~Ly~~~~~p~~~~vr~~L~e~-------~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d 125 (273)
+..|...+||.|++..-.|.++ ++.+-.+.++.......++. +..+. ..|++.|
T Consensus 65 ~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~-~~~~~-~~~~~~d 125 (173)
T PRK03147 65 FLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFV-NRYGL-TFPVAID 125 (173)
T ss_pred EEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHH-HHhCC-CceEEEC
Confidence 3444467999998754444322 24444444443322233444 33322 4566654
No 289
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=63.48 E-value=34 Score=24.83 Aligned_cols=57 Identities=19% Similarity=0.396 Sum_probs=32.3
Q ss_pred ceEEEecCCCchHHHHHHHHHHcC------CceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCc
Q 024026 69 RLQLFEFEACPFCRRVREAITELD------LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGV 130 (273)
Q Consensus 69 ~l~Ly~~~~~p~~~~vr~~L~e~~------l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~ 130 (273)
-+..|..+||+.|+...-.++++. +.+-.++++.. ++.. +...-..+|.++--.+|.
T Consensus 21 ~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~----~~~~-~~~~v~~~Pt~~~~~~g~ 83 (101)
T cd03003 21 WFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDD----RMLC-RSQGVNSYPSLYVFPSGM 83 (101)
T ss_pred EEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCcc----HHHH-HHcCCCccCEEEEEcCCC
Confidence 355666789999998776665442 22223455432 3333 344466899884322453
No 290
>PHA02125 thioredoxin-like protein
Probab=62.10 E-value=13 Score=25.75 Aligned_cols=52 Identities=19% Similarity=0.309 Sum_probs=37.2
Q ss_pred hhhhhccCCchHHHHHHHHHhcCCceEEEEcCCCCCCchhHHhhcCCCcccEEEcC
Q 024026 191 LELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDP 246 (273)
Q Consensus 191 i~ly~~~~s~~~~~v~~~L~e~gi~y~~~~v~~~~~~~~~~~~~~~~~~VP~l~d~ 246 (273)
+..|..+.|+.|+.+...|.+. .+...+++.+ ...++.+..+...+|.++++
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~--~~~~~~vd~~--~~~~l~~~~~v~~~PT~~~g 53 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANV--EYTYVDVDTD--EGVELTAKHHIRSLPTLVNT 53 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHH--hheEEeeeCC--CCHHHHHHcCCceeCeEECC
Confidence 3456778899999999988765 5665555543 23566677788899999853
No 291
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=61.66 E-value=28 Score=30.17 Aligned_cols=77 Identities=16% Similarity=0.231 Sum_probs=45.5
Q ss_pred ceEEEecCCCchHHHHHHHHHHc----CCceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCccc------cChHHH
Q 024026 69 RLQLFEFEACPFCRRVREAITEL----DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSM------YESGDI 138 (273)
Q Consensus 69 ~l~Ly~~~~~p~~~~vr~~L~e~----~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~~l------~ES~aI 138 (273)
-+..|..+||+.|+...-.++++ +-...+..++... .++.. +...-..+|.++-=++|..+ ....+|
T Consensus 55 vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~--~~~l~-~~~~I~~~PTl~~f~~G~~v~~~~G~~s~e~L 131 (224)
T PTZ00443 55 WFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATR--ALNLA-KRFAIKGYPTLLLFDKGKMYQYEGGDRSTEKL 131 (224)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcc--cHHHH-HHcCCCcCCEEEEEECCEEEEeeCCCCCHHHH
Confidence 35566678999999876666543 2123333343322 23333 45556789987532355432 346788
Q ss_pred HHHHHHHhCC
Q 024026 139 VNYLFQQYGK 148 (273)
Q Consensus 139 ~~YL~~~~~~ 148 (273)
.+|+.+.|..
T Consensus 132 ~~fi~~~~~~ 141 (224)
T PTZ00443 132 AAFALGDFKK 141 (224)
T ss_pred HHHHHHHHHh
Confidence 8999988854
No 292
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=61.55 E-value=25 Score=25.30 Aligned_cols=53 Identities=23% Similarity=0.347 Sum_probs=29.2
Q ss_pred ceEEEecCCCchHHHHHHHHHHc-----C--CceEEEECCCCChhhHHHHHHhCCCCcccEEE
Q 024026 69 RLQLFEFEACPFCRRVREAITEL-----D--LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLI 124 (273)
Q Consensus 69 ~l~Ly~~~~~p~~~~vr~~L~e~-----~--l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~ 124 (273)
.+..|..+||+.|+...-.+.++ + -.+.+..++-.. ..+.. +...-..+|.++
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~--~~~~~-~~~~v~~~Pt~~ 78 (102)
T cd03005 19 HFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQ--HRELC-SEFQVRGYPTLL 78 (102)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCC--ChhhH-hhcCCCcCCEEE
Confidence 55667778999999876555433 1 123333333221 12333 344456899875
No 293
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=61.35 E-value=42 Score=27.32 Aligned_cols=54 Identities=24% Similarity=0.338 Sum_probs=28.1
Q ss_pred EEEecCCCchHHHHHHHHHHc---CCceEEEECCCCChhhHHHHHHhCCCCccc-EEEeC
Q 024026 71 QLFEFEACPFCRRVREAITEL---DLSVEVFPCPKGSIRHREMVRRLGGKEQFP-FLIDP 126 (273)
Q Consensus 71 ~Ly~~~~~p~~~~vr~~L~e~---~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP-~L~d~ 126 (273)
..|...|||.|++..-.|.++ |+.+-.++++.......+++ +.++. ..| ++.|+
T Consensus 68 l~F~a~wC~~C~~~~p~l~~l~~~~~~vi~V~~~~~~~~~~~~~-~~~~~-~f~~v~~D~ 125 (173)
T TIGR00385 68 LNVWASWCPPCRAEHPYLNELAKDGLPIVGVDYKDQSQNALKFL-KELGN-PYQAILIDP 125 (173)
T ss_pred EEEECCcCHHHHHHHHHHHHHHHcCCEEEEEECCCChHHHHHHH-HHcCC-CCceEEECC
Confidence 344457999999865555444 55444444433322334555 34432 344 44553
No 294
>cd03189 GST_C_GTT1_like GST_C family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endopl
Probab=60.84 E-value=6.4 Score=29.54 Aligned_cols=65 Identities=9% Similarity=0.047 Sum_probs=35.6
Q ss_pred CCChhHHHHHHhhhhhHHhhcccchh----hc-ccCCC--------CCchhhhhhhccCCchHHHHHHHHHhcCCceEEE
Q 024026 153 STGLLESTLITGWMPTIFRAGRGMTL----WE-KARPD--------PPSKKLELFSYENNPYARIVREALCELELPYILQ 219 (273)
Q Consensus 153 ~~~~~~~~~~~~wl~~~~~~~~~~~~----~~-~~~~~--------~~~~~i~ly~~~~s~~~~~v~~~L~e~gi~y~~~ 219 (273)
+.++.+++++++|++ +..+...... +. ...+. ......+.....+...+..++..|.+. +|+++
T Consensus 2 ~~~~~~ra~~~~wl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~--~~l~G 78 (119)
T cd03189 2 PPDTAEYADYLYWLH-FAEGSLMPPLLLKLVLSRIGSAPPPIANKIADKVLAGFINPELKKHLDFLEDRLAKK--GYFVG 78 (119)
T ss_pred CCCHHHHHHHHHHHH-HHhHhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHhHHHHHHHHHHHHHHccC--CCCCC
Confidence 456788999999998 4443332111 11 11110 112222333345666777888888765 78754
Q ss_pred E
Q 024026 220 N 220 (273)
Q Consensus 220 ~ 220 (273)
+
T Consensus 79 d 79 (119)
T cd03189 79 D 79 (119)
T ss_pred C
Confidence 3
No 295
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.81 E-value=17 Score=28.42 Aligned_cols=70 Identities=16% Similarity=0.123 Sum_probs=38.8
Q ss_pred cCCCchHHHHH----HHHHHcCCceEEEECCCCC---hhhHHHHHHhCCC--CcccEEEeCC-CCccccChHHHHHHHHH
Q 024026 75 FEACPFCRRVR----EAITELDLSVEVFPCPKGS---IRHREMVRRLGGK--EQFPFLIDPN-TGVSMYESGDIVNYLFQ 144 (273)
Q Consensus 75 ~~~~p~~~~vr----~~L~e~~l~~~~~~v~~~~---~~~~~~~~~~~p~--~~vP~L~d~~-~g~~l~ES~aI~~YL~~ 144 (273)
-+|||.|.++. .+|++...+..++.|.-|+ |+.+.--.++.|. ..||.|+--. .+..+-+.......|.+
T Consensus 42 qSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLlrw~~~~~rL~~~q~~~~~Lve 121 (128)
T KOG3425|consen 42 QSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLLRWKRQPQRLDGLQCLNDHLVE 121 (128)
T ss_pred CcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCceeecceeeEEcCccccchHhHhhHHHHHH
Confidence 35899998765 4666666666666554332 3322111133332 5789986532 33456666665555554
No 296
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=60.34 E-value=39 Score=27.87 Aligned_cols=51 Identities=18% Similarity=0.320 Sum_probs=27.1
Q ss_pred EecCCCchHHHHHHHHHHc---CCceEEEECCCCChhhHHHHHHhCCCCcccE-EEe
Q 024026 73 FEFEACPFCRRVREAITEL---DLSVEVFPCPKGSIRHREMVRRLGGKEQFPF-LID 125 (273)
Q Consensus 73 y~~~~~p~~~~vr~~L~e~---~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~-L~d 125 (273)
|...|||.|++-.-.|.++ |+.+-.++++.......+|+ +.++. ..|+ +.|
T Consensus 75 FwatwC~~C~~e~p~l~~l~~~~~~vi~v~~~~~~~~~~~~~-~~~~~-~~~~~~~D 129 (185)
T PRK15412 75 VWATWCPTCRAEHQYLNQLSAQGIRVVGMNYKDDRQKAISWL-KELGN-PYALSLFD 129 (185)
T ss_pred EECCCCHHHHHHHHHHHHHHHcCCEEEEEECCCCHHHHHHHH-HHcCC-CCceEEEc
Confidence 3356899998765555443 55544444443323344555 44433 4554 555
No 297
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=59.71 E-value=17 Score=29.25 Aligned_cols=26 Identities=15% Similarity=0.331 Sum_probs=18.9
Q ss_pred CCCceEEEecCCCchHHHHHHHHHHc
Q 024026 66 SPTRLQLFEFEACPFCRRVREAITEL 91 (273)
Q Consensus 66 ~~~~l~Ly~~~~~p~~~~vr~~L~e~ 91 (273)
.+..|..|....||+|++..-.+..+
T Consensus 15 ~~~~i~~f~D~~Cp~C~~~~~~~~~~ 40 (178)
T cd03019 15 GKPEVIEFFSYGCPHCYNFEPILEAW 40 (178)
T ss_pred CCcEEEEEECCCCcchhhhhHHHHHH
Confidence 34456677777899999888776543
No 298
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=59.58 E-value=9.6 Score=27.58 Aligned_cols=54 Identities=19% Similarity=0.284 Sum_probs=30.5
Q ss_pred ceEEEecCCCchHHHHHHHHHHc----C--CceEEEECCCCChhhHHHHHHhCCCCcccEEE
Q 024026 69 RLQLFEFEACPFCRRVREAITEL----D--LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLI 124 (273)
Q Consensus 69 ~l~Ly~~~~~p~~~~vr~~L~e~----~--l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~ 124 (273)
-+..|..++|+.|+...-.+.++ . -.+....++.... .++.. +..+-..+|.++
T Consensus 21 ~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~-~~~~i~~~P~~~ 80 (105)
T cd02998 21 VLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEA-NKDLA-KKYGVSGFPTLK 80 (105)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCc-chhhH-HhCCCCCcCEEE
Confidence 46677788999998765555442 2 2244444432220 23433 344566899885
No 299
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=59.41 E-value=8.3 Score=29.09 Aligned_cols=58 Identities=14% Similarity=0.140 Sum_probs=34.8
Q ss_pred eEEEecCCCchHHHHHHHHHHc-----CCceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCcccc
Q 024026 70 LQLFEFEACPFCRRVREAITEL-----DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMY 133 (273)
Q Consensus 70 l~Ly~~~~~p~~~~vr~~L~e~-----~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~~l~ 133 (273)
+..|..++|+.|+.+.-.|+++ ++.+-.++++ . . + +.+...-..+|+++-=.+|..+.
T Consensus 28 vv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~--~--~-~-l~~~~~i~~~Pt~~~f~~G~~v~ 90 (113)
T cd02957 28 VVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAE--K--A-F-LVNYLDIKVLPTLLVYKNGELID 90 (113)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEch--h--h-H-HHHhcCCCcCCEEEEEECCEEEE
Confidence 4556678999999888777664 3333333333 2 1 2 33455567899886534665443
No 300
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=58.62 E-value=5.6 Score=29.38 Aligned_cols=52 Identities=17% Similarity=0.247 Sum_probs=29.5
Q ss_pred ceEEEecCCCchHHHHHHHHHHc-------CCceEE--EECCCCChhhHHHHHHhCCCCcccEEEe
Q 024026 69 RLQLFEFEACPFCRRVREAITEL-------DLSVEV--FPCPKGSIRHREMVRRLGGKEQFPFLID 125 (273)
Q Consensus 69 ~l~Ly~~~~~p~~~~vr~~L~e~-------~l~~~~--~~v~~~~~~~~~~~~~~~p~~~vP~L~d 125 (273)
-+..|..+|||.|++..-.++++ +..+.. ++++. .++.. +...-..+|.++-
T Consensus 18 vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~----~~~~~-~~~~I~~~Pt~~l 78 (104)
T cd03000 18 WLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATA----YSSIA-SEFGVRGYPTIKL 78 (104)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECcc----CHhHH-hhcCCccccEEEE
Confidence 45566678999999766555332 322333 34432 22333 4445668999864
No 301
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=58.08 E-value=26 Score=26.28 Aligned_cols=59 Identities=14% Similarity=0.203 Sum_probs=36.8
Q ss_pred hHHHHHHHHHhcCCceEEEEcCCCCCCchhHHhhcC---------CCcccEEEcCCCCeeeccHHHHHHH
Q 024026 201 YARIVREALCELELPYILQNVGDGSSRTKLLVDITG---------SKEVPYLIDPNTSTQIGDYKKILSY 261 (273)
Q Consensus 201 ~~~~v~~~L~e~gi~y~~~~v~~~~~~~~~~~~~~~---------~~~VP~l~d~~~~~~l~eS~~I~~y 261 (273)
....+...|..++++|+.+++..++..+..+.+..+ ..-.|-+.. ++..+.+..++.+.
T Consensus 19 ~q~~v~~iL~a~kI~fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~--~~~Y~Gdye~f~ea 86 (99)
T PF04908_consen 19 RQQRVLMILEAKKIPFEEVDIAMDEEARQWMRENAGPEEKDPGNGKPLPPQIFN--GDEYCGDYEDFEEA 86 (99)
T ss_dssp HHHHHHHHHHHTT--EEEEETTT-HHHHHHHHHHT--CCCS-TSTT--S-EEEE--TTEEEEEHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcEEEeCcCCHHHHHHHHHhccccccCCCCCCCCCCEEEe--CCEEEeeHHHHHHH
Confidence 455678889999999999999887777777776552 223356654 34566777666654
No 302
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=57.28 E-value=52 Score=22.84 Aligned_cols=48 Identities=15% Similarity=0.240 Sum_probs=33.3
Q ss_pred hhhhccCCchHHHH----HHHHHhcCCceEEEEcCCCCCCchhHHhhcCCCcccEEEc
Q 024026 192 ELFSYENNPYARIV----REALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLID 245 (273)
Q Consensus 192 ~ly~~~~s~~~~~v----~~~L~e~gi~y~~~~v~~~~~~~~~~~~~~~~~~VP~l~d 245 (273)
.+|. ..|+.|+.+ +..+.+.+.++.+..++. .++ ....+...+|+++-
T Consensus 4 ~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~----~~~-a~~~~v~~vPti~i 55 (76)
T TIGR00412 4 QIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVTD----MNE-ILEAGVTATPGVAV 55 (76)
T ss_pred EEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeCC----HHH-HHHcCCCcCCEEEE
Confidence 4454 789999987 556677777888877762 222 33457888998876
No 303
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=57.20 E-value=12 Score=29.70 Aligned_cols=24 Identities=25% Similarity=0.570 Sum_probs=17.9
Q ss_pred CCCceEEEecCCCchHHHHHHHHH
Q 024026 66 SPTRLQLFEFEACPFCRRVREAIT 89 (273)
Q Consensus 66 ~~~~l~Ly~~~~~p~~~~vr~~L~ 89 (273)
.+..+++|....||+|++....+.
T Consensus 12 a~~~v~~f~d~~Cp~C~~~~~~~~ 35 (162)
T PF13462_consen 12 APITVTEFFDFQCPHCAKFHEELE 35 (162)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHH
T ss_pred CCeEEEEEECCCCHhHHHHHHHHh
Confidence 345788999999999998876653
No 304
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=56.89 E-value=7.9 Score=28.66 Aligned_cols=52 Identities=19% Similarity=0.300 Sum_probs=30.4
Q ss_pred ceEEEecCCCchHHHHHHHHHHc-----CCceEEEECCCCChhhHHHHHHhCCCCcccEEE
Q 024026 69 RLQLFEFEACPFCRRVREAITEL-----DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLI 124 (273)
Q Consensus 69 ~l~Ly~~~~~p~~~~vr~~L~e~-----~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~ 124 (273)
-+..|..+||+.|+...-.++++ ++.+-.++.+. ..++.. +...-..+|+++
T Consensus 21 vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~---~~~~l~-~~~~V~~~PT~~ 77 (100)
T cd02999 21 TAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESS---IKPSLL-SRYGVVGFPTIL 77 (100)
T ss_pred EEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCC---CCHHHH-HhcCCeecCEEE
Confidence 35566678999999888777655 33332233321 123333 444566889775
No 305
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=56.87 E-value=3.9 Score=32.16 Aligned_cols=57 Identities=12% Similarity=0.172 Sum_probs=28.8
Q ss_pred CceEEEecCCCchHHHHHHHH----HHc-CCceEEEECCCCChhhHHHHHHhCCCCcccEEEeC
Q 024026 68 TRLQLFEFEACPFCRRVREAI----TEL-DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDP 126 (273)
Q Consensus 68 ~~l~Ly~~~~~p~~~~vr~~L----~e~-~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~ 126 (273)
..+.++.-.|||.|++..=+| ++. +|++.++..+.+...-..++ . ++...||+++.-
T Consensus 43 ~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~l-t-~g~~~IP~~I~~ 104 (129)
T PF14595_consen 43 YNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYL-T-NGGRSIPTFIFL 104 (129)
T ss_dssp EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTT-T--SS--SSEEEEE
T ss_pred cEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHH-h-CCCeecCEEEEE
Confidence 356778888999998655444 333 66666655432211122333 2 778899999753
No 306
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=56.74 E-value=27 Score=25.80 Aligned_cols=53 Identities=23% Similarity=0.583 Sum_probs=27.5
Q ss_pred EEEecCCCchHHHHHHHHHHcC----CceEEEECCCCC-hhhHHHHHHhCCCCcccEEE
Q 024026 71 QLFEFEACPFCRRVREAITELD----LSVEVFPCPKGS-IRHREMVRRLGGKEQFPFLI 124 (273)
Q Consensus 71 ~Ly~~~~~p~~~~vr~~L~e~~----l~~~~~~v~~~~-~~~~~~~~~~~p~~~vP~L~ 124 (273)
..|..+|||.|++..-.|+++. -...++-+..++ ....++. +..+...+|++.
T Consensus 26 l~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~-~~~~~~~~p~~~ 83 (114)
T cd02967 26 LFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFL-KKHGLEAFPYVL 83 (114)
T ss_pred EEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHH-HHhCCCCCcEEe
Confidence 3344568999997765555432 122333332222 2334444 455554578776
No 307
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=56.66 E-value=18 Score=29.49 Aligned_cols=36 Identities=25% Similarity=0.461 Sum_probs=26.6
Q ss_pred ceEEEecCCCchHHHHHH----HHHHc-CCceEEEECCCCC
Q 024026 69 RLQLFEFEACPFCRRVRE----AITEL-DLSVEVFPCPKGS 104 (273)
Q Consensus 69 ~l~Ly~~~~~p~~~~vr~----~L~e~-~l~~~~~~v~~~~ 104 (273)
.|++|....||||..... ++++. ++.++.+++....
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~~ 41 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLRP 41 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSST
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEecccccc
Confidence 367888889999965544 44555 8888888887654
No 308
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=55.79 E-value=33 Score=30.63 Aligned_cols=74 Identities=18% Similarity=0.267 Sum_probs=52.2
Q ss_pred CCCCceEEEecCCC------chHHHHHHHHHHcCCceEEEECCCCChhhHHHHHHhCC----CCcccEEEeCCCCccccC
Q 024026 65 DSPTRLQLFEFEAC------PFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGG----KEQFPFLIDPNTGVSMYE 134 (273)
Q Consensus 65 ~~~~~l~Ly~~~~~------p~~~~vr~~L~e~~l~~~~~~v~~~~~~~~~~~~~~~p----~~~vP~L~d~~~g~~l~E 134 (273)
-.+..+.+|.-..- -.|..||.+|+-.++-|+.++|..+. ..++++..+-+ .-..|.+.. +|..|..
T Consensus 128 gge~~VVvY~TsLRgvRkTfE~C~~VR~ilesf~V~v~ERDVSMd~-~fr~EL~~~lg~~~~~~~LPrVFV--~GryIGg 204 (281)
T KOG2824|consen 128 GGEDRVVVYTTSLRGVRKTFEDCNAVRAILESFRVKVDERDVSMDS-EFREELQELLGEDEKAVSLPRVFV--KGRYIGG 204 (281)
T ss_pred CCCceEEEEEcccchhhhhHHHHHHHHHHHHhCceEEEEecccccH-HHHHHHHHHHhcccccCccCeEEE--ccEEecc
Confidence 45567889974321 24899999999999999999998764 33444444433 356787664 7888888
Q ss_pred hHHHHHH
Q 024026 135 SGDIVNY 141 (273)
Q Consensus 135 S~aI~~Y 141 (273)
...|.+-
T Consensus 205 aeeV~~L 211 (281)
T KOG2824|consen 205 AEEVVRL 211 (281)
T ss_pred HHHhhhh
Confidence 7777664
No 309
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=55.46 E-value=47 Score=25.59 Aligned_cols=56 Identities=20% Similarity=0.312 Sum_probs=29.4
Q ss_pred CceEEEe--cCCCchHHHHHHHHHH-------cCCceEEEECCCCChhhHHHHHHhCCCCcccEEEeC
Q 024026 68 TRLQLFE--FEACPFCRRVREAITE-------LDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDP 126 (273)
Q Consensus 68 ~~l~Ly~--~~~~p~~~~vr~~L~e-------~~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~ 126 (273)
+.+.|+. ..+||.|++-.-.|.+ .|+.+-.+..+..+ ....+. +.. .-.+|++.|+
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~-~~~~~~-~~~-~~~~p~~~D~ 88 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPE-KLEAFD-KGK-FLPFPVYADP 88 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHH-HHHHHH-Hhc-CCCCeEEECC
Confidence 3444443 4689999875554443 34444334433221 222343 444 3468999985
No 310
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=55.40 E-value=87 Score=31.04 Aligned_cols=55 Identities=9% Similarity=0.109 Sum_probs=30.9
Q ss_pred eEEEecCCCchHHHHHHH-------HHHc-CCceEEEECCCCChhhHHHHHHhCCCCcccEEEe
Q 024026 70 LQLFEFEACPFCRRVREA-------ITEL-DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLID 125 (273)
Q Consensus 70 l~Ly~~~~~p~~~~vr~~-------L~e~-~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d 125 (273)
+.-|+.+||+.|+..... -+++ ++.+-.++++..+....+.. +......+|+++-
T Consensus 478 lVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~-~~~~v~g~Pt~~~ 540 (571)
T PRK00293 478 MLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALL-KHYNVLGLPTILF 540 (571)
T ss_pred EEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHH-HHcCCCCCCEEEE
Confidence 344567899999875332 1222 33333345554433344554 5555667998853
No 311
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=55.30 E-value=43 Score=23.87 Aligned_cols=55 Identities=24% Similarity=0.348 Sum_probs=29.7
Q ss_pred ceEEEecCCCchHHHHHHHHHHc-------CCceEEEECCCC-ChhhHHHHHHhCCCCcccEEEe
Q 024026 69 RLQLFEFEACPFCRRVREAITEL-------DLSVEVFPCPKG-SIRHREMVRRLGGKEQFPFLID 125 (273)
Q Consensus 69 ~l~Ly~~~~~p~~~~vr~~L~e~-------~l~~~~~~v~~~-~~~~~~~~~~~~p~~~vP~L~d 125 (273)
.+..|...+||.|++....|.++ ++.+..+.++.. .....+++ +.++ ...|++.|
T Consensus 22 ~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~-~~~~-~~~~~~~~ 84 (116)
T cd02966 22 VLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFL-KKYG-ITFPVLLD 84 (116)
T ss_pred EEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHH-HHcC-CCcceEEc
Confidence 45566677999998766555544 333334444443 23334444 3332 45666665
No 312
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=54.32 E-value=59 Score=23.27 Aligned_cols=52 Identities=17% Similarity=0.249 Sum_probs=28.9
Q ss_pred ceEEEecCCCchHHHHHHHHHHc------CCceEEEECCCCChhhHHHHHHhCCCCcccEEEe
Q 024026 69 RLQLFEFEACPFCRRVREAITEL------DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLID 125 (273)
Q Consensus 69 ~l~Ly~~~~~p~~~~vr~~L~e~------~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d 125 (273)
-+.++..++|+.|+...-.+.++ .+.+-.++++. ..+.. +...-..+|.++-
T Consensus 21 vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~----~~~~~-~~~~i~~~P~~~~ 78 (103)
T cd03001 21 WLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADV----HQSLA-QQYGVRGFPTIKV 78 (103)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcc----hHHHH-HHCCCCccCEEEE
Confidence 34566678999999876655443 12233334432 23333 3334567997753
No 313
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=54.12 E-value=76 Score=25.46 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=15.2
Q ss_pred ceEEE-ecCCCchHHHHHHHHHH
Q 024026 69 RLQLF-EFEACPFCRRVREAITE 90 (273)
Q Consensus 69 ~l~Ly-~~~~~p~~~~vr~~L~e 90 (273)
.+.|| ...|||.|++..-.|.+
T Consensus 27 ~vlL~FwAsWCppCr~e~P~L~~ 49 (146)
T cd03008 27 VLLLFFGAVVSPQCQLFAPKLKD 49 (146)
T ss_pred EEEEEEECCCChhHHHHHHHHHH
Confidence 34333 35689999998877755
No 314
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=53.77 E-value=53 Score=24.41 Aligned_cols=51 Identities=25% Similarity=0.527 Sum_probs=28.4
Q ss_pred EecCCCchHHHHHHHHHHc-------CCceEEEECCCCChhhHHHHHHhCCCCcccEEEeC
Q 024026 73 FEFEACPFCRRVREAITEL-------DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDP 126 (273)
Q Consensus 73 y~~~~~p~~~~vr~~L~e~-------~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~ 126 (273)
|...+||.|......|.++ |+.+-.+..+..+ ...++..+.+ -..|++.|+
T Consensus 33 ~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~-~~~~~~~~~~--~~~~~~~D~ 90 (124)
T PF00578_consen 33 WPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPE-EIKQFLEEYG--LPFPVLSDP 90 (124)
T ss_dssp ESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHH-HHHHHHHHHT--CSSEEEEET
T ss_pred eCccCccccccchhHHHHHhhhhccceEEeeeccccccc-chhhhhhhhc--cccccccCc
Confidence 3333799998776655443 4444344443221 2345553343 578999984
No 315
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=52.59 E-value=44 Score=27.57 Aligned_cols=58 Identities=12% Similarity=0.080 Sum_probs=33.5
Q ss_pred EEEecCCCchHHHHHHHHHHcCC---ceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCccc
Q 024026 71 QLFEFEACPFCRRVREAITELDL---SVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSM 132 (273)
Q Consensus 71 ~Ly~~~~~p~~~~vr~~L~e~~l---~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~~l 132 (273)
..|+.+||+.|+.+.-.|+.+-- .+.++.|+.... .+....+-..||+|+-=.+|..+
T Consensus 88 V~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~----~l~~~f~v~~vPTlllyk~G~~v 148 (175)
T cd02987 88 VHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT----GASDEFDTDALPALLVYKGGELI 148 (175)
T ss_pred EEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch----hhHHhCCCCCCCEEEEEECCEEE
Confidence 34556899999977766655532 233334433221 23456677789988543356543
No 316
>KOG3027 consensus Mitochondrial outer membrane protein Metaxin 2, Metaxin 1-binding protein [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=52.57 E-value=39 Score=29.06 Aligned_cols=57 Identities=16% Similarity=0.266 Sum_probs=42.5
Q ss_pred chHHHHHHHHHhcCCceEEEEcCCCCCCchhHHhhcCCCcccEEEcCCCCeeeccHHHHHHHHHhh
Q 024026 200 PYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQS 265 (273)
Q Consensus 200 ~~~~~v~~~L~e~gi~y~~~~v~~~~~~~~~~~~~~~~~~VP~l~d~~~~~~l~eS~~I~~yL~~~ 265 (273)
..|-.|...|+--++||.++..+. .+| ++|.|+||.|..+ ...+.|-..|++++..+
T Consensus 35 ascLAVqtfLrMcnLPf~v~~~~N-----aef--mSP~G~vPllr~g--~~~~aef~pIV~fVeak 91 (257)
T KOG3027|consen 35 ASCLAVQTFLRMCNLPFNVRQRAN-----AEF--MSPGGKVPLLRIG--KTLFAEFEPIVDFVEAK 91 (257)
T ss_pred hhHHHHHHHHHHcCCCceeeecCC-----ccc--cCCCCCCceeeec--chhhhhhhHHHHHHHHh
Confidence 345567788888888999876332 334 5688899999874 45678899999999876
No 317
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=51.55 E-value=13 Score=26.84 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=17.3
Q ss_pred ceEEEecCCCchHHHHHHHHHHc
Q 024026 69 RLQLFEFEACPFCRRVREAITEL 91 (273)
Q Consensus 69 ~l~Ly~~~~~p~~~~vr~~L~e~ 91 (273)
.+.+|..++|+.|+...-.+.++
T Consensus 21 ~~v~f~~~~C~~C~~~~~~~~~~ 43 (104)
T cd02995 21 VLVEFYAPWCGHCKALAPIYEEL 43 (104)
T ss_pred EEEEEECCCCHHHHHHhhHHHHH
Confidence 45667778999999877766554
No 318
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=51.53 E-value=42 Score=25.31 Aligned_cols=54 Identities=22% Similarity=0.322 Sum_probs=30.0
Q ss_pred ceEEEecCCCchHHHHHHHHHHcC---------CceEEEECCCCChhhHHHHHHhCCCCcccEEEe
Q 024026 69 RLQLFEFEACPFCRRVREAITELD---------LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLID 125 (273)
Q Consensus 69 ~l~Ly~~~~~p~~~~vr~~L~e~~---------l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d 125 (273)
-+..|..+||+.|+...-.++++. +.+-.++++.. ...+.. +...-..+|.++-
T Consensus 22 vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~--~~~~~~-~~~~i~~~Pt~~l 84 (114)
T cd02992 22 WLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADE--ENVALC-RDFGVTGYPTLRY 84 (114)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccch--hhHHHH-HhCCCCCCCEEEE
Confidence 345666789999987766654432 22222343322 223333 4445667898854
No 319
>PLN02309 5'-adenylylsulfate reductase
Probab=50.79 E-value=91 Score=30.07 Aligned_cols=54 Identities=22% Similarity=0.428 Sum_probs=31.5
Q ss_pred ceEEEecCCCchHHHHHHHHHHc-----C--CceEEEECCCCChhhHHHHHHhCCCCcccEEEe
Q 024026 69 RLQLFEFEACPFCRRVREAITEL-----D--LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLID 125 (273)
Q Consensus 69 ~l~Ly~~~~~p~~~~vr~~L~e~-----~--l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d 125 (273)
-+..|+.+||++|+...-.++++ + +.+-.++++.. ..+...+...-..+|+|+.
T Consensus 368 vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~---~~~la~~~~~I~~~PTil~ 428 (457)
T PLN02309 368 WLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGD---QKEFAKQELQLGSFPTILL 428 (457)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCc---chHHHHhhCCCceeeEEEE
Confidence 46678889999999877666544 2 33333444421 1233322345668999864
No 320
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=49.97 E-value=77 Score=23.63 Aligned_cols=56 Identities=9% Similarity=0.116 Sum_probs=31.1
Q ss_pred CceE-EEecCCCchHHHHH-HHHH------HcCCceEEEECCCCChhhHHHHHHhCCCCcccEEE
Q 024026 68 TRLQ-LFEFEACPFCRRVR-EAIT------ELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLI 124 (273)
Q Consensus 68 ~~l~-Ly~~~~~p~~~~vr-~~L~------e~~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~ 124 (273)
+.+- .++.++|++|.+.. .+|+ .++=.|....++..+....++. ...+...+|.++
T Consensus 18 K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~-~~~~~~~~P~~~ 81 (114)
T cd02958 18 KWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFL-QSYKVDKYPHIA 81 (114)
T ss_pred ceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHH-HHhCccCCCeEE
Confidence 3443 34457899998753 2332 2222455555554433344544 566677899884
No 321
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=48.80 E-value=35 Score=27.36 Aligned_cols=70 Identities=14% Similarity=0.218 Sum_probs=45.2
Q ss_pred CCceEEEecCCCchHHHHHHHHHHcCCceEEEECCCCChhhHHHHHHhCCCCccc-------EEEeCCCCccc---cChH
Q 024026 67 PTRLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFP-------FLIDPNTGVSM---YESG 136 (273)
Q Consensus 67 ~~~l~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP-------~L~d~~~g~~l---~ES~ 136 (273)
...|++|..|+|..|..--..|+.+|..+..+..+.- +.+++. -.|| +.+. +|..+ .=-.
T Consensus 25 ~~~~~vyksPnCGCC~~w~~~mk~~Gf~Vk~~~~~d~-----~alK~~---~gIp~e~~SCHT~VI--~Gy~vEGHVPa~ 94 (149)
T COG3019 25 ATEMVVYKSPNCGCCDEWAQHMKANGFEVKVVETDDF-----LALKRR---LGIPYEMQSCHTAVI--NGYYVEGHVPAE 94 (149)
T ss_pred eeeEEEEeCCCCccHHHHHHHHHhCCcEEEEeecCcH-----HHHHHh---cCCChhhccccEEEE--cCEEEeccCCHH
Confidence 3478899999999999999999999988777655421 222221 1233 2222 34322 1257
Q ss_pred HHHHHHHHHh
Q 024026 137 DIVNYLFQQY 146 (273)
Q Consensus 137 aI~~YL~~~~ 146 (273)
+|.+.|+++.
T Consensus 95 aI~~ll~~~p 104 (149)
T COG3019 95 AIARLLAEKP 104 (149)
T ss_pred HHHHHHhCCC
Confidence 8999998876
No 322
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=48.64 E-value=88 Score=23.54 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=14.9
Q ss_pred eEEEecCCCchHHHHHHHHHHc
Q 024026 70 LQLFEFEACPFCRRVREAITEL 91 (273)
Q Consensus 70 l~Ly~~~~~p~~~~vr~~L~e~ 91 (273)
+..|...+||.|++..-.|.++
T Consensus 29 vv~F~a~~C~~C~~~~~~l~~l 50 (127)
T cd03010 29 LLNVWASWCAPCREEHPVLMAL 50 (127)
T ss_pred EEEEEcCcCHHHHHHHHHHHHH
Confidence 3444467899999766666554
No 323
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=48.54 E-value=1.1e+02 Score=28.61 Aligned_cols=75 Identities=17% Similarity=0.286 Sum_probs=44.8
Q ss_pred ceEEEecCCCchHHHHHHHHH-------HcC--CceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCcc-------c
Q 024026 69 RLQLFEFEACPFCRRVREAIT-------ELD--LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVS-------M 132 (273)
Q Consensus 69 ~l~Ly~~~~~p~~~~vr~~L~-------e~~--l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~~-------l 132 (273)
-+.+|..+||++|++..-.+. ..+ +.+-.++|+.. ++.. +..+-..+|.++--.+|.. .
T Consensus 21 ~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~----~~l~-~~~~i~~~Pt~~~~~~g~~~~~~~~g~ 95 (462)
T TIGR01130 21 VLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEE----KDLA-QKYGVSGYPTLKIFRNGEDSVSDYNGP 95 (462)
T ss_pred EEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCc----HHHH-HhCCCccccEEEEEeCCccceeEecCC
Confidence 456777899999998754333 223 44444555533 2333 3445567887743233432 2
Q ss_pred cChHHHHHHHHHHhCC
Q 024026 133 YESGDIVNYLFQQYGK 148 (273)
Q Consensus 133 ~ES~aI~~YL~~~~~~ 148 (273)
.....|..++.+..+.
T Consensus 96 ~~~~~l~~~i~~~~~~ 111 (462)
T TIGR01130 96 RDADGIVKYMKKQSGP 111 (462)
T ss_pred CCHHHHHHHHHHhcCC
Confidence 4677899999887653
No 324
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=48.08 E-value=41 Score=25.63 Aligned_cols=18 Identities=28% Similarity=0.634 Sum_probs=12.2
Q ss_pred EEecCCCchHHHHHHHHH
Q 024026 72 LFEFEACPFCRRVREAIT 89 (273)
Q Consensus 72 Ly~~~~~p~~~~vr~~L~ 89 (273)
.+...+||.|++..-.|.
T Consensus 24 ~Fwa~wC~~C~~~~p~l~ 41 (131)
T cd03009 24 YFSASWCPPCRAFTPKLV 41 (131)
T ss_pred EEECCCChHHHHHhHHHH
Confidence 334568999997655554
No 325
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=47.53 E-value=38 Score=28.36 Aligned_cols=32 Identities=22% Similarity=0.540 Sum_probs=20.8
Q ss_pred eEEEecCCCchHHHHHHHH----HHcCCceEEEECC
Q 024026 70 LQLFEFEACPFCRRVREAI----TELDLSVEVFPCP 101 (273)
Q Consensus 70 l~Ly~~~~~p~~~~vr~~L----~e~~l~~~~~~v~ 101 (273)
+.+|...|||+|++..-.| ++.|+.+.-+.++
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g~~Vi~Vs~D 108 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYGFSVFPYTLD 108 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcCCEEEEEEeC
Confidence 5556667999999875444 4446655555554
No 326
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=47.26 E-value=63 Score=27.06 Aligned_cols=60 Identities=13% Similarity=0.262 Sum_probs=35.0
Q ss_pred CceEEEec--CCCchHHHH---HHHHHHcCCce------EEEECCCCChhhHHHHH---HhCCCCccc---EEEeCCCC
Q 024026 68 TRLQLFEF--EACPFCRRV---REAITELDLSV------EVFPCPKGSIRHREMVR---RLGGKEQFP---FLIDPNTG 129 (273)
Q Consensus 68 ~~l~Ly~~--~~~p~~~~v---r~~L~e~~l~~------~~~~v~~~~~~~~~~~~---~~~p~~~vP---~L~d~~~g 129 (273)
.++.|-.+ .||+.|+.- ..+|+..|+++ ..++.+...+....|++ +.+ ....| ++.|+ +|
T Consensus 59 GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~-~~~~P~~~vllD~-~g 135 (184)
T TIGR01626 59 GKVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKG-KKENPWSQVVLDD-KG 135 (184)
T ss_pred CCEEEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccchhhHHHHHHHHHHHh-cccCCcceEEECC-cc
Confidence 45544444 489999754 44556678998 66776654444445543 122 22455 88874 45
No 327
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=46.48 E-value=26 Score=28.39 Aligned_cols=60 Identities=18% Similarity=0.186 Sum_probs=33.0
Q ss_pred eEEEecCCCchHHHHHHHHHHcC-------CceEEEECCCCChhhHHHHHHhCC-----CCcccEEEeCCCCcccc
Q 024026 70 LQLFEFEACPFCRRVREAITELD-------LSVEVFPCPKGSIRHREMVRRLGG-----KEQFPFLIDPNTGVSMY 133 (273)
Q Consensus 70 l~Ly~~~~~p~~~~vr~~L~e~~-------l~~~~~~v~~~~~~~~~~~~~~~p-----~~~vP~L~d~~~g~~l~ 133 (273)
+..|..+|||.|+...-.++++- +.+-.++++.. ++...+.+- -.++|+++-=.+|..+.
T Consensus 51 vV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~----~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~ 122 (152)
T cd02962 51 LVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRF----PNVAEKFRVSTSPLSKQLPTIILFQGGKEVA 122 (152)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCC----HHHHHHcCceecCCcCCCCEEEEEECCEEEE
Confidence 55666789999998876665542 33333455433 222212221 13489885434666543
No 328
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=45.45 E-value=1.1e+02 Score=29.69 Aligned_cols=53 Identities=23% Similarity=0.447 Sum_probs=30.3
Q ss_pred ceEEEecCCCchHHHHHHHHHHc-------CCceEEEECCCCChhhHHHHHHhCCCCcccEEE
Q 024026 69 RLQLFEFEACPFCRRVREAITEL-------DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLI 124 (273)
Q Consensus 69 ~l~Ly~~~~~p~~~~vr~~L~e~-------~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~ 124 (273)
-+..|+.+||++|+...-.++++ ++.+-.++++... .+...+...-..+|+++
T Consensus 374 VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~---~~~~~~~~~I~~~PTii 433 (463)
T TIGR00424 374 WLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQ---KEFAKQELQLGSFPTIL 433 (463)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCc---cHHHHHHcCCCccceEE
Confidence 35567778999998776655444 2444445665432 12222233455788885
No 329
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=45.38 E-value=1.1e+02 Score=25.11 Aligned_cols=69 Identities=23% Similarity=0.404 Sum_probs=38.7
Q ss_pred CCceEEEecC--CCchHHH----HHHHHHHc-CCceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCccccChHHHH
Q 024026 67 PTRLQLFEFE--ACPFCRR----VREAITEL-DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIV 139 (273)
Q Consensus 67 ~~~l~Ly~~~--~~p~~~~----vr~~L~e~-~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~~l~ES~aI~ 139 (273)
-+.+.||-|| .+|-|.+ -|..+.+. ++..+++=|..++...-..+.+.+.. ++|.|-|+ ++.
T Consensus 30 Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L-~f~LLSD~-~~~--------- 98 (157)
T COG1225 30 GKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGL-TFPLLSDE-DGE--------- 98 (157)
T ss_pred CCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCC-CceeeECC-cHH---------
Confidence 3478999998 4666533 33333332 23444444444433333334466655 49999985 343
Q ss_pred HHHHHHhCC
Q 024026 140 NYLFQQYGK 148 (273)
Q Consensus 140 ~YL~~~~~~ 148 (273)
+++.||.
T Consensus 99 --v~~~ygv 105 (157)
T COG1225 99 --VAEAYGV 105 (157)
T ss_pred --HHHHhCc
Confidence 6678874
No 330
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=45.35 E-value=73 Score=28.30 Aligned_cols=55 Identities=15% Similarity=0.291 Sum_probs=31.0
Q ss_pred ceEEEecCCCchHHHHHHHHHH----cCCceEEEECCCCCh-------hhHHHHHHhCCCCcccEEE
Q 024026 69 RLQLFEFEACPFCRRVREAITE----LDLSVEVFPCPKGSI-------RHREMVRRLGGKEQFPFLI 124 (273)
Q Consensus 69 ~l~Ly~~~~~p~~~~vr~~L~e----~~l~~~~~~v~~~~~-------~~~~~~~~~~p~~~vP~L~ 124 (273)
-+..|...+||+|+...-.|.+ .|+.+..+.++.... ...... +..+-..+|.++
T Consensus 169 ~Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la-~~~gV~~vPtl~ 234 (271)
T TIGR02740 169 GLFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQA-QQLKIRTVPAVF 234 (271)
T ss_pred EEEEEECCCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHH-HHcCCCcCCeEE
Confidence 3445556789999977655544 466655566654211 012222 344556789883
No 331
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=44.48 E-value=29 Score=28.63 Aligned_cols=32 Identities=25% Similarity=0.606 Sum_probs=20.9
Q ss_pred eEEEecCCCchHHHHHHHH----HHc----CCceEEEECC
Q 024026 70 LQLFEFEACPFCRRVREAI----TEL----DLSVEVFPCP 101 (273)
Q Consensus 70 l~Ly~~~~~p~~~~vr~~L----~e~----~l~~~~~~v~ 101 (273)
|++|....||||......| ++. ++.++.+++.
T Consensus 1 I~~~~D~~cP~cyl~~~~l~~~~~~~~~~~~~~v~~~p~~ 40 (201)
T cd03024 1 IDIWSDVVCPWCYIGKRRLEKALAELGDEVDVEIEWRPFE 40 (201)
T ss_pred CeEEecCcCccHHHHHHHHHHHHHhCCCCCceEEEEeeee
Confidence 4678888899998555444 455 4556655553
No 332
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=43.15 E-value=1.1e+02 Score=22.66 Aligned_cols=56 Identities=25% Similarity=0.409 Sum_probs=29.8
Q ss_pred ceEEEecCCCchHHHHHHHHHHcC--CceEEEECCCC-ChhhHHHHHHhCCCCcccEEEeC
Q 024026 69 RLQLFEFEACPFCRRVREAITELD--LSVEVFPCPKG-SIRHREMVRRLGGKEQFPFLIDP 126 (273)
Q Consensus 69 ~l~Ly~~~~~p~~~~vr~~L~e~~--l~~~~~~v~~~-~~~~~~~~~~~~p~~~vP~L~d~ 126 (273)
.+..|...+||.|+...-.|..+. +....+.++.+ ...-.++. +.++ ..+|++.|+
T Consensus 23 ~vl~F~~~~C~~C~~~~~~l~~~~~~~~~i~i~~~~~~~~~~~~~~-~~~~-~~~~~~~d~ 81 (123)
T cd03011 23 VLVYFWATWCPVCRFTSPTVNQLAADYPVVSVALRSGDDGAVARFM-QKKG-YGFPVINDP 81 (123)
T ss_pred EEEEEECCcChhhhhhChHHHHHHhhCCEEEEEccCCCHHHHHHHH-HHcC-CCccEEECC
Confidence 445555778999987755554432 33333334332 22334444 3343 357877764
No 333
>cd03188 GST_C_Beta GST_C family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site for
Probab=43.05 E-value=23 Score=26.02 Aligned_cols=60 Identities=10% Similarity=0.097 Sum_probs=32.8
Q ss_pred HHHHHHhhhhhHHhhcccch--hhc---ccCC--CCCchhhhhhhccCCchHHHHHHHHHhcCCceEEEE
Q 024026 158 ESTLITGWMPTIFRAGRGMT--LWE---KARP--DPPSKKLELFSYENNPYARIVREALCELELPYILQN 220 (273)
Q Consensus 158 ~~~~~~~wl~~~~~~~~~~~--~~~---~~~~--~~~~~~i~ly~~~~s~~~~~v~~~L~e~gi~y~~~~ 220 (273)
+|+.+++|++ +........ .+. ...+ +..+...+.....+...+..++..|... +|++++
T Consensus 2 ~ra~~~~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~--~~l~G~ 68 (114)
T cd03188 2 ERARLLEWLN-FLSSELHKAFGPLFYPARWATDEAAQEEVKAAARERLAARLAYLDAQLAGG--PYLLGD 68 (114)
T ss_pred cHHHHHHHHH-HHhhhhchhhhhcccccccccChhhHHHHHHHHHHHHHHHHHHHHHHhcCC--CeeeCC
Confidence 5789999998 443322211 111 0111 1113334445556777788888888755 787653
No 334
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=42.59 E-value=1.1e+02 Score=24.04 Aligned_cols=56 Identities=14% Similarity=0.195 Sum_probs=28.7
Q ss_pred CceEEEec--CCCchHHHH-------HHHHHHcCCceEEEECCCCChhhHHHHHHhCCCCcccEEEeC
Q 024026 68 TRLQLFEF--EACPFCRRV-------REAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDP 126 (273)
Q Consensus 68 ~~l~Ly~~--~~~p~~~~v-------r~~L~e~~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~ 126 (273)
+.+.|+-+ .+||.|..- ...+...|+.+--+.++.. ....++. +.++ ...|+|.|+
T Consensus 31 k~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~-~~~~~~~-~~~~-~~~~~l~D~ 95 (154)
T PRK09437 31 QRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKP-EKLSRFA-EKEL-LNFTLLSDE 95 (154)
T ss_pred CCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCH-HHHHHHH-HHhC-CCCeEEECC
Confidence 34545544 378988643 2334445655444444321 2334555 3333 368888763
No 335
>PF13728 TraF: F plasmid transfer operon protein
Probab=42.46 E-value=84 Score=26.88 Aligned_cols=60 Identities=25% Similarity=0.427 Sum_probs=37.2
Q ss_pred CceEEEecCCCchHHHH----HHHHHHcCCceEEEECCCCC-------hhhHHHHHHhCCCCcccEE--EeCCC
Q 024026 68 TRLQLFEFEACPFCRRV----REAITELDLSVEVFPCPKGS-------IRHREMVRRLGGKEQFPFL--IDPNT 128 (273)
Q Consensus 68 ~~l~Ly~~~~~p~~~~v----r~~L~e~~l~~~~~~v~~~~-------~~~~~~~~~~~p~~~vP~L--~d~~~ 128 (273)
-.+.++....||+|+.- +.+-.+.|+.+..+.+|... .......++.+ -..+|+| +++++
T Consensus 122 ~gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~-v~~~Pal~Lv~~~~ 194 (215)
T PF13728_consen 122 YGLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLG-VKVTPALFLVNPNT 194 (215)
T ss_pred eEEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcC-CCcCCEEEEEECCC
Confidence 35667777789999754 44555668888888876321 11234443444 4689988 55544
No 336
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=42.36 E-value=62 Score=24.83 Aligned_cols=18 Identities=28% Similarity=0.634 Sum_probs=12.5
Q ss_pred EEecCCCchHHHHHHHHH
Q 024026 72 LFEFEACPFCRRVREAIT 89 (273)
Q Consensus 72 Ly~~~~~p~~~~vr~~L~ 89 (273)
.|...|||.|+...-.|.
T Consensus 23 ~F~atwC~~C~~~~p~l~ 40 (132)
T cd02964 23 YFSASWCPPCRAFTPKLV 40 (132)
T ss_pred EEECCCCchHHHHHHHHH
Confidence 344568999998665554
No 337
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=42.03 E-value=38 Score=28.52 Aligned_cols=35 Identities=17% Similarity=0.280 Sum_probs=24.9
Q ss_pred ceEEEecCCCchHHHHHH----HHHHcCCceEEEECCCC
Q 024026 69 RLQLFEFEACPFCRRVRE----AITELDLSVEVFPCPKG 103 (273)
Q Consensus 69 ~l~Ly~~~~~p~~~~vr~----~L~e~~l~~~~~~v~~~ 103 (273)
.|.+|.-..||||.-... ++...+++++.+++..+
T Consensus 2 ~Id~~~D~vcPwcylg~~~l~~~~~~~~v~i~~~P~~L~ 40 (209)
T cd03021 2 KIELYYDVVSPYSYLAFEVLCRYQTAWNVDITYVPVFLG 40 (209)
T ss_pred ceEEEEeCCChHHHHHHHHHHHHHHHhCCeEEEEeeehh
Confidence 577898889999976544 44556777777777543
No 338
>cd03196 GST_C_5 GST_C family, unknown subfamily 5; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=41.74 E-value=14 Score=28.03 Aligned_cols=103 Identities=11% Similarity=0.073 Sum_probs=50.0
Q ss_pred ChhHHHHHHhhhhhHHhhccc-chhhcccCCCCCchhhhhhhccCCchHHHHHHHHHhcCCceEEEEcCCCCCCchhHHh
Q 024026 155 GLLESTLITGWMPTIFRAGRG-MTLWEKARPDPPSKKLELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVD 233 (273)
Q Consensus 155 ~~~~~~~~~~wl~~~~~~~~~-~~~~~~~~~~~~~~~i~ly~~~~s~~~~~v~~~L~e~gi~y~~~~v~~~~~~~~~~~~ 233 (273)
++..++.+.+|+. +..+... .............+..+.....+...+..++..|.+. +|++++ ...-.+-.+
T Consensus 3 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~le~~L~~~--~yl~Gd---~~tlADi~l- 75 (115)
T cd03196 3 DPAALKEMLALIA-ENDNEFKHHLDRYKYADRYPEESEEEYRQQAEAFLKDLEARLQQH--SYLLGD---KPSLADWAI- 75 (115)
T ss_pred chHHHHHHHHHHH-HcchhhHHHHHhccchhhcCcccHHHHHHHHHHHHHHHHHHHccC--CccCCC---CccHHHHHH-
Confidence 5678899999998 3332211 1111011111111124444455677788889989876 787543 111111111
Q ss_pred hcCC-CcccEEEcCCCCeeeccHHHHHHHHHhhcC
Q 024026 234 ITGS-KEVPYLIDPNTSTQIGDYKKILSYLFQSYS 267 (273)
Q Consensus 234 ~~~~-~~VP~l~d~~~~~~l~eS~~I~~yL~~~y~ 267 (273)
.+. ...... .. .+..+.+.+.|.+|+++...
T Consensus 76 -~~~l~~~~~~-~~-~~~~~~~~P~L~~w~~r~~~ 107 (115)
T cd03196 76 -FPFVRQFAHV-DP-KWFDQSPYPRLRRWLNGFLA 107 (115)
T ss_pred -HHHHHHHHHh-hh-cccCcccCHHHHHHHHHHHc
Confidence 110 000100 00 12234678999999988754
No 339
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=41.53 E-value=85 Score=23.89 Aligned_cols=58 Identities=22% Similarity=0.334 Sum_probs=30.7
Q ss_pred CCceEEEec--CCCchHHHHHHHHHH-------cCCceEEEECCCCChhhHHHHHHhCCCCcccEEEeC
Q 024026 67 PTRLQLFEF--EACPFCRRVREAITE-------LDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDP 126 (273)
Q Consensus 67 ~~~l~Ly~~--~~~p~~~~vr~~L~e-------~~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~ 126 (273)
.+.+.|+.+ .+||.|......|.+ .++.+-.+.++.. .....+. +..+...+|+|.|+
T Consensus 22 gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~-~~~~~~~-~~~~~~~~~~l~D~ 88 (140)
T cd02971 22 GKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSP-FSHKAWA-EKEGGLNFPLLSDP 88 (140)
T ss_pred CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCH-HHHHHHH-hcccCCCceEEECC
Confidence 344555544 479999775544443 3444444443321 2233444 44435578988874
No 340
>cd03178 GST_C_Ure2p_like GST_C family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The N-terminal thioredoxin-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of GSH with a wide range of en
Probab=41.51 E-value=20 Score=26.40 Aligned_cols=59 Identities=15% Similarity=0.214 Sum_probs=32.7
Q ss_pred HHHHHHhhhhhHHhhcccch----hhc-ccCCCCCchhhhhhhccCCchHHHHHHHHHhcCCceEEE
Q 024026 158 ESTLITGWMPTIFRAGRGMT----LWE-KARPDPPSKKLELFSYENNPYARIVREALCELELPYILQ 219 (273)
Q Consensus 158 ~~~~~~~wl~~~~~~~~~~~----~~~-~~~~~~~~~~i~ly~~~~s~~~~~v~~~L~e~gi~y~~~ 219 (273)
+++++++|++ |........ .+. ...++..+..++.........+..++..|.+. +|+++
T Consensus 1 ~ra~~~~wl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~--~~l~G 64 (113)
T cd03178 1 ERYEVLQWLF-FQMGGLGPMFGQAGHFSRYAPEKIPYAIERYTNEAKRLYGVLDKRLAGR--DYLAG 64 (113)
T ss_pred ChHHHHHHHH-HHHccCCCcchHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHccC--CcccC
Confidence 3688999998 554433311 111 11222223334444455667778888888754 67764
No 341
>PTZ00102 disulphide isomerase; Provisional
Probab=41.46 E-value=1.4e+02 Score=28.22 Aligned_cols=76 Identities=18% Similarity=0.245 Sum_probs=43.8
Q ss_pred CceEEEecCCCchHHHHHHHH-------HHcC--CceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCcc-----cc
Q 024026 68 TRLQLFEFEACPFCRRVREAI-------TELD--LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVS-----MY 133 (273)
Q Consensus 68 ~~l~Ly~~~~~p~~~~vr~~L-------~e~~--l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~~-----l~ 133 (273)
.-+..|..+||++|++..-.+ .+.+ +.+-.+++... .+.. +...-..+|.++-=++|.. -.
T Consensus 51 ~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~----~~l~-~~~~i~~~Pt~~~~~~g~~~~y~g~~ 125 (477)
T PTZ00102 51 IVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEE----MELA-QEFGVRGYPTIKFFNKGNPVNYSGGR 125 (477)
T ss_pred cEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCC----HHHH-HhcCCCcccEEEEEECCceEEecCCC
Confidence 356677789999998765322 2223 33334444432 2333 3444567897743223332 24
Q ss_pred ChHHHHHHHHHHhCC
Q 024026 134 ESGDIVNYLFQQYGK 148 (273)
Q Consensus 134 ES~aI~~YL~~~~~~ 148 (273)
....|..||.+..+.
T Consensus 126 ~~~~l~~~l~~~~~~ 140 (477)
T PTZ00102 126 TADGIVSWIKKLTGP 140 (477)
T ss_pred CHHHHHHHHHHhhCC
Confidence 577899999987654
No 342
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=41.31 E-value=1e+02 Score=23.41 Aligned_cols=56 Identities=21% Similarity=0.307 Sum_probs=28.5
Q ss_pred CceEEEec--CCCchHHHHHHHH-------HHcCCceEEEECCCCChhhHHHHHHhCCCCcccEEEeC
Q 024026 68 TRLQLFEF--EACPFCRRVREAI-------TELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDP 126 (273)
Q Consensus 68 ~~l~Ly~~--~~~p~~~~vr~~L-------~e~~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~ 126 (273)
+.+.|+.+ .+||.|.+-...| ...|+.+-.+.++.. ....++. +.++. .+|++.|+
T Consensus 24 k~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~-~~~~~~~-~~~~~-~~~~l~D~ 88 (140)
T cd03017 24 KPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSV-ESHAKFA-EKYGL-PFPLLSDP 88 (140)
T ss_pred CcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCH-HHHHHHH-HHhCC-CceEEECC
Confidence 34444443 5799997643333 333554433333321 2334555 34433 68888874
No 343
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=40.07 E-value=53 Score=23.62 Aligned_cols=54 Identities=15% Similarity=0.130 Sum_probs=33.6
Q ss_pred ceEEEecCCCchHHHHHHHHHHcCCc----eEEEECCCCChhhHHHHHHhCCCC--cccEEEe
Q 024026 69 RLQLFEFEACPFCRRVREAITELDLS----VEVFPCPKGSIRHREMVRRLGGKE--QFPFLID 125 (273)
Q Consensus 69 ~l~Ly~~~~~p~~~~vr~~L~e~~l~----~~~~~v~~~~~~~~~~~~~~~p~~--~vP~L~d 125 (273)
.+.+|..++|+.|...+..++++.-. +.+..++..+ .++.. +..+.. .+|+++-
T Consensus 15 ~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~--~~~~~-~~~~i~~~~~P~~~~ 74 (103)
T cd02982 15 LLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADD--FGRHL-EYFGLKEEDLPVIAI 74 (103)
T ss_pred EEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHh--hHHHH-HHcCCChhhCCEEEE
Confidence 45567677899999998888776433 3444454432 23343 444454 8999964
No 344
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=39.68 E-value=1.5e+02 Score=28.94 Aligned_cols=78 Identities=19% Similarity=0.213 Sum_probs=47.9
Q ss_pred eEEEecCCCchHHH-------HHHHHHHcCCceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCc------cccChH
Q 024026 70 LQLFEFEACPFCRR-------VREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGV------SMYESG 136 (273)
Q Consensus 70 l~Ly~~~~~p~~~~-------vr~~L~e~~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~------~l~ES~ 136 (273)
|.-|+.|||.+|.+ +--.|.+.|=+..+-.|+-... .+. .....-...|+|..=-+|. -..+..
T Consensus 46 lVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~--~~~-~~~y~v~gyPTlkiFrnG~~~~~Y~G~r~ad 122 (493)
T KOG0190|consen 46 LVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEE--SDL-ASKYEVRGYPTLKIFRNGRSAQDYNGPREAD 122 (493)
T ss_pred EEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchh--hhh-HhhhcCCCCCeEEEEecCCcceeccCcccHH
Confidence 45666789999964 4456666655666655543322 222 2344455677774322444 256789
Q ss_pred HHHHHHHHHhCCCC
Q 024026 137 DIVNYLFQQYGKGR 150 (273)
Q Consensus 137 aI~~YL~~~~~~~~ 150 (273)
.|+.||-++.++..
T Consensus 123 gIv~wl~kq~gPa~ 136 (493)
T KOG0190|consen 123 GIVKWLKKQSGPAS 136 (493)
T ss_pred HHHHHHHhccCCCc
Confidence 99999999987543
No 345
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=39.09 E-value=1.8e+02 Score=22.42 Aligned_cols=36 Identities=8% Similarity=0.027 Sum_probs=21.3
Q ss_pred HcCCceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCc
Q 024026 90 ELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGV 130 (273)
Q Consensus 90 e~~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~ 130 (273)
+.++.+-.++++.. ++ +.+..+-..+|+|+-=.+|.
T Consensus 63 ~~~v~~~kVD~d~~----~~-La~~~~I~~iPTl~lfk~G~ 98 (120)
T cd03065 63 DKGIGFGLVDSKKD----AK-VAKKLGLDEEDSIYVFKDDE 98 (120)
T ss_pred cCCCEEEEEeCCCC----HH-HHHHcCCccccEEEEEECCE
Confidence 34566656666643 33 33566678899995433554
No 346
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=38.71 E-value=43 Score=27.28 Aligned_cols=33 Identities=12% Similarity=0.164 Sum_probs=22.7
Q ss_pred eEEEecCCCchHHHHHHHH----HHcCCceEEEECCC
Q 024026 70 LQLFEFEACPFCRRVREAI----TELDLSVEVFPCPK 102 (273)
Q Consensus 70 l~Ly~~~~~p~~~~vr~~L----~e~~l~~~~~~v~~ 102 (273)
|++|....||||......| .+.++.++.+++..
T Consensus 1 i~~~~D~~cP~cy~~~~~l~~~~~~~~~~i~~~p~~l 37 (192)
T cd03022 1 IDFYFDFSSPYSYLAHERLPALAARHGATVRYRPILL 37 (192)
T ss_pred CeEEEeCCChHHHHHHHHHHHHHHHhCCeeEEeeeeH
Confidence 4678888999998765444 45577777766643
No 347
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=37.97 E-value=87 Score=23.61 Aligned_cols=60 Identities=12% Similarity=0.101 Sum_probs=37.0
Q ss_pred CCceE-EEecCCCchHHHHHHHHHHcCCce-----EEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCcc
Q 024026 67 PTRLQ-LFEFEACPFCRRVREAITELDLSV-----EVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVS 131 (273)
Q Consensus 67 ~~~l~-Ly~~~~~p~~~~vr~~L~e~~l~~-----~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~~ 131 (273)
.+.+. -|+..||+.|+...=.++++--.| -.++|+. .++.. +...-..+|+++--.+|..
T Consensus 21 ~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde----~~~~~-~~~~V~~~PTf~f~k~g~~ 86 (106)
T KOG0907|consen 21 DKLVVVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDE----LEEVA-KEFNVKAMPTFVFYKGGEE 86 (106)
T ss_pred CCeEEEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEeccc----CHhHH-HhcCceEeeEEEEEECCEE
Confidence 34443 355679999999888877774443 3455654 34544 4444668898865435543
No 348
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=37.83 E-value=41 Score=25.75 Aligned_cols=64 Identities=14% Similarity=0.037 Sum_probs=38.6
Q ss_pred CCceEEEecCC--CchHHHHHHHHHHcCCce----EEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCcccc
Q 024026 67 PTRLQLFEFEA--CPFCRRVREAITELDLSV----EVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMY 133 (273)
Q Consensus 67 ~~~l~Ly~~~~--~p~~~~vr~~L~e~~l~~----~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~~l~ 133 (273)
...+..|+.++ ||-|+.+.-+|+++--.| .+..++..+ .++ +.+...-..+|+|+-=.+|..+.
T Consensus 28 ~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~--~~~-la~~f~V~sIPTli~fkdGk~v~ 97 (111)
T cd02965 28 GDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRAD--EQA-LAARFGVLRTPALLFFRDGRYVG 97 (111)
T ss_pred CCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCC--CHH-HHHHcCCCcCCEEEEEECCEEEE
Confidence 34566676664 999999998887764333 222333222 233 44566677899996544676543
No 349
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=36.92 E-value=1.2e+02 Score=23.46 Aligned_cols=55 Identities=20% Similarity=0.260 Sum_probs=27.7
Q ss_pred CceEEEe--cCCCchHHHHHHHHHHc-------CCceEEEECCCCChhhHHHHHHhCCCCcccEEEe
Q 024026 68 TRLQLFE--FEACPFCRRVREAITEL-------DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLID 125 (273)
Q Consensus 68 ~~l~Ly~--~~~~p~~~~vr~~L~e~-------~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d 125 (273)
+.+.|+. ..+||.|.+....|.++ |+.+-.+.++.. ....++. +..+ -.+|++.|
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~-~~~~~~~-~~~~-~~~~~~~D 92 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSP-FSLRAWA-EENG-LTFPLLSD 92 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCH-HHHHHHH-HhcC-CCceEecC
Confidence 3444444 45899998665444433 444333333321 1234454 3333 35777765
No 350
>COG5515 Uncharacterized conserved small protein [Function unknown]
Probab=36.82 E-value=26 Score=23.88 Aligned_cols=22 Identities=32% Similarity=0.831 Sum_probs=16.7
Q ss_pred ceEEEecC----CCchHHHHHHHHHH
Q 024026 69 RLQLFEFE----ACPFCRRVREAITE 90 (273)
Q Consensus 69 ~l~Ly~~~----~~p~~~~vr~~L~e 90 (273)
.++||.+- .+.||.||-.+|++
T Consensus 2 ~mKLYRfiTGpDDssFChrvta~LN~ 27 (70)
T COG5515 2 KMKLYRFITGPDDSSFCHRVTAALNK 27 (70)
T ss_pred cceeeEeecCCchHHHHHHHHHHHhC
Confidence 45677653 57899999999875
No 351
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=36.65 E-value=1.5e+02 Score=26.20 Aligned_cols=61 Identities=21% Similarity=0.319 Sum_probs=36.4
Q ss_pred CceEEEecCCCchHHHHHH----HHHHcCCceEEEECCCCCh-------hhHHHHHHhCCCCcccEE--EeCCCC
Q 024026 68 TRLQLFEFEACPFCRRVRE----AITELDLSVEVFPCPKGSI-------RHREMVRRLGGKEQFPFL--IDPNTG 129 (273)
Q Consensus 68 ~~l~Ly~~~~~p~~~~vr~----~L~e~~l~~~~~~v~~~~~-------~~~~~~~~~~p~~~vP~L--~d~~~g 129 (273)
-.+.++....||+|++--- +-+..|+++..+.++.... .......++ +-..+|+| ++++++
T Consensus 152 ~gL~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l-~v~~~Pal~Lv~~~t~ 225 (256)
T TIGR02739 152 YGLFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHL-GVKYFPALYLVNPKSQ 225 (256)
T ss_pred eeEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhc-CCccCceEEEEECCCC
Confidence 3566666678999986544 4466799888888864311 011222233 34679987 555444
No 352
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=35.89 E-value=41 Score=23.95 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=20.2
Q ss_pred CchHHHHHHHHHHcCCceEEEEC
Q 024026 78 CPFCRRVREAITELDLSVEVFPC 100 (273)
Q Consensus 78 ~p~~~~vr~~L~e~~l~~~~~~v 100 (273)
-.|++|+..+|+..|++||..+-
T Consensus 15 vGF~rk~L~I~E~~~is~Eh~PS 37 (76)
T cd04911 15 VGFGRKLLSILEDNGISYEHMPS 37 (76)
T ss_pred hcHHHHHHHHHHHcCCCEeeecC
Confidence 36999999999999999998654
No 353
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=34.71 E-value=40 Score=22.70 Aligned_cols=33 Identities=9% Similarity=-0.054 Sum_probs=20.0
Q ss_pred eEEEecCCCchHHHHHHHHHHcCCceEEEECCC
Q 024026 70 LQLFEFEACPFCRRVREAITELDLSVEVFPCPK 102 (273)
Q Consensus 70 l~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~ 102 (273)
.+||....---+..++-+|++.||++.+.+...
T Consensus 1 ~~l~~~~~~~ea~~i~~~L~~~gI~~~v~~~~~ 33 (67)
T PF09413_consen 1 KKLYTAGDPIEAELIKGLLEENGIPAFVKNEHM 33 (67)
T ss_dssp EEEEEE--HHHHHHHHHHHHHTT--EE--S---
T ss_pred CEEEEcCCHHHHHHHHHHHHhCCCcEEEECCcc
Confidence 367887655568999999999999998876543
No 354
>PTZ00056 glutathione peroxidase; Provisional
Probab=33.84 E-value=1.9e+02 Score=24.28 Aligned_cols=71 Identities=13% Similarity=0.243 Sum_probs=37.6
Q ss_pred EecCCCchHHHHHHHHHHc-------CCceEEEECCC------CC-hhhHHHHHHhCCCCcccEEEeCCCCccccChHHH
Q 024026 73 FEFEACPFCRRVREAITEL-------DLSVEVFPCPK------GS-IRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDI 138 (273)
Q Consensus 73 y~~~~~p~~~~vr~~L~e~-------~l~~~~~~v~~------~~-~~~~~~~~~~~p~~~vP~L~d~~~g~~l~ES~aI 138 (273)
|-..|||+|++-.-.|.++ |+.+--++++. ++ .....++ +.++ -..|++.|. +..-.....+
T Consensus 46 fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~-~~~~-~~fpvl~d~--~v~g~~~~~l 121 (199)
T PTZ00056 46 NSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFN-DKNK-IKYNFFEPI--EVNGENTHEL 121 (199)
T ss_pred EECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHH-HHcC-CCceeeeee--eccCCccCHH
Confidence 3346899998754444433 44444444321 11 2344555 4443 368888652 1112256677
Q ss_pred HHHHHHHhC
Q 024026 139 VNYLFQQYG 147 (273)
Q Consensus 139 ~~YL~~~~~ 147 (273)
..||.+..+
T Consensus 122 ~~~l~~~~~ 130 (199)
T PTZ00056 122 FKFLKANCD 130 (199)
T ss_pred HHHHHHhCc
Confidence 888876644
No 355
>smart00594 UAS UAS domain.
Probab=33.81 E-value=2.1e+02 Score=21.68 Aligned_cols=61 Identities=13% Similarity=0.268 Sum_probs=31.3
Q ss_pred CceEEEecCCCchHHH-HHHHHH------HcCCceEEEECCCCChhhHHHHHHhCCCCcccEE--EeCCCC
Q 024026 68 TRLQLFEFEACPFCRR-VREAIT------ELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFL--IDPNTG 129 (273)
Q Consensus 68 ~~l~Ly~~~~~p~~~~-vr~~L~------e~~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L--~d~~~g 129 (273)
..+...+.++|+.|.+ .|.+|. .++=.|-...++.......+.. ......++|.+ +++++|
T Consensus 29 ~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~-~~~~~~~~P~~~~l~~~~g 98 (122)
T smart00594 29 LLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVS-QFYKLDSFPYVAIVDPRTG 98 (122)
T ss_pred CEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHH-HhcCcCCCCEEEEEecCCC
Confidence 3455556678999875 332221 1122355444443333334444 44455679988 555544
No 356
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=33.73 E-value=84 Score=28.26 Aligned_cols=44 Identities=20% Similarity=0.352 Sum_probs=32.1
Q ss_pred HHHHHHHHHcCCceEEE-ECCCCCh------h---hHHHHHHhCCCCcccEEEe
Q 024026 82 RRVREAITELDLSVEVF-PCPKGSI------R---HREMVRRLGGKEQFPFLID 125 (273)
Q Consensus 82 ~~vr~~L~e~~l~~~~~-~v~~~~~------~---~~~~~~~~~p~~~vP~L~d 125 (273)
++|.++..++||.|.++ .|++++. . .-..+++.||..+|=+|+-
T Consensus 103 ~rvAeaV~~mgLkyVViTsVdRDDL~DGGA~hfa~~i~~Ire~~P~t~iEvL~P 156 (306)
T COG0320 103 ERVAEAVKDMGLKYVVITSVDRDDLPDGGAQHFAECIRAIRELNPQTTIEVLTP 156 (306)
T ss_pred HHHHHHHHHhCCCeEEEEeeccccccccchHHHHHHHHHHHhhCCCceEEEeCc
Confidence 58999999999999986 4544321 1 1234567899999999984
No 357
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=33.37 E-value=76 Score=25.72 Aligned_cols=24 Identities=17% Similarity=0.322 Sum_probs=18.9
Q ss_pred CchHHHHHHHHHHcCCceEEEECC
Q 024026 78 CPFCRRVREAITELDLSVEVFPCP 101 (273)
Q Consensus 78 ~p~~~~vr~~L~e~~l~~~~~~v~ 101 (273)
-+.+.+++..|+++|++|+++-+.
T Consensus 13 ~~~~~~a~~~L~~~gi~~~~~V~s 36 (150)
T PF00731_consen 13 LPIAEEAAKTLEEFGIPYEVRVAS 36 (150)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEE--
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEe
Confidence 378999999999999999987664
No 358
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=32.90 E-value=83 Score=22.22 Aligned_cols=40 Identities=20% Similarity=0.336 Sum_probs=23.2
Q ss_pred EEecCCCchHHHHHHHHHHc----C--CceEEEEC--CCCChhhHHHH
Q 024026 72 LFEFEACPFCRRVREAITEL----D--LSVEVFPC--PKGSIRHREMV 111 (273)
Q Consensus 72 Ly~~~~~p~~~~vr~~L~e~----~--l~~~~~~v--~~~~~~~~~~~ 111 (273)
.|...+|+.|++....|.++ + -.++++.| +.......+++
T Consensus 7 ~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~ 54 (95)
T PF13905_consen 7 YFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFL 54 (95)
T ss_dssp EEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHH
Confidence 34456899999888877654 2 45555554 43323334444
No 359
>cd03182 GST_C_GTT2_like GST_C family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensiti
Probab=32.78 E-value=33 Score=25.40 Aligned_cols=63 Identities=14% Similarity=0.045 Sum_probs=34.0
Q ss_pred ChhHHHHHHhhhhhHHhhcccc-hhhcc----cC-----CCCCchhhhhhhccCCchHHHHHHHHHhcCCceEEE
Q 024026 155 GLLESTLITGWMPTIFRAGRGM-TLWEK----AR-----PDPPSKKLELFSYENNPYARIVREALCELELPYILQ 219 (273)
Q Consensus 155 ~~~~~~~~~~wl~~~~~~~~~~-~~~~~----~~-----~~~~~~~i~ly~~~~s~~~~~v~~~L~e~gi~y~~~ 219 (273)
++.+++.+++|+++........ ..... .. ....+...+.....+...+..++..|++. +|+++
T Consensus 1 d~~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~--~~l~g 73 (117)
T cd03182 1 TPLERAQIEMWQRRAELQGLYPIGQAFRHATPGLKPPDREEQVPEWGERSKARAADFLAYLDTRLAGS--PYVAG 73 (117)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCccccccCHHHHHHHHHHHHHHHHHHHHHhcCC--CcccC
Confidence 3567899999999422222111 10110 00 11223334444455677788888888765 68754
No 360
>PRK13599 putative peroxiredoxin; Provisional
Probab=32.54 E-value=1.4e+02 Score=25.50 Aligned_cols=58 Identities=17% Similarity=0.206 Sum_probs=30.1
Q ss_pred ceEEEecC--CCchHHHHHHHH-------HHcCCceEEEECCCCChh--hHHHHHHh-CCCCcccEEEeC
Q 024026 69 RLQLFEFE--ACPFCRRVREAI-------TELDLSVEVFPCPKGSIR--HREMVRRL-GGKEQFPFLIDP 126 (273)
Q Consensus 69 ~l~Ly~~~--~~p~~~~vr~~L-------~e~~l~~~~~~v~~~~~~--~~~~~~~~-~p~~~vP~L~d~ 126 (273)
.+.||.++ +||.|..-...| ...|+.+--+.++..... ..+++++. +-.-.+|+|.|+
T Consensus 30 ~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~ 99 (215)
T PRK13599 30 WFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADD 99 (215)
T ss_pred eEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECC
Confidence 45577776 799998744333 334655444455432111 11233222 223468988874
No 361
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=30.87 E-value=81 Score=21.78 Aligned_cols=31 Identities=16% Similarity=0.397 Sum_probs=26.3
Q ss_pred EEecCCCchHHHHHHHHHHcCCceEEEECCC
Q 024026 72 LFEFEACPFCRRVREAITELDLSVEVFPCPK 102 (273)
Q Consensus 72 Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~ 102 (273)
+..|+....+.++.-+|+..|+++++++++.
T Consensus 5 ~i~F~st~~a~~~ek~lk~~gi~~~liP~P~ 35 (73)
T PF11823_consen 5 LITFPSTHDAMKAEKLLKKNGIPVRLIPTPR 35 (73)
T ss_pred EEEECCHHHHHHHHHHHHHCCCcEEEeCCCh
Confidence 4556667789999999999999999998874
No 362
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=30.84 E-value=1.6e+02 Score=21.52 Aligned_cols=24 Identities=13% Similarity=0.350 Sum_probs=18.9
Q ss_pred CchHHHHHHHHHHcCCceEEEECC
Q 024026 78 CPFCRRVREAITELDLSVEVFPCP 101 (273)
Q Consensus 78 ~p~~~~vr~~L~e~~l~~~~~~v~ 101 (273)
|-.+.+++..+++.|+++++..++
T Consensus 13 S~~~~ki~~~~~~~~~~~~v~~~~ 36 (96)
T cd05564 13 SILVKKMKKAAEKRGIDAEIEAVP 36 (96)
T ss_pred HHHHHHHHHHHHHCCCceEEEEec
Confidence 345788899999999998887665
No 363
>cd03186 GST_C_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=30.84 E-value=27 Score=25.51 Aligned_cols=59 Identities=10% Similarity=-0.004 Sum_probs=31.3
Q ss_pred hHHHHHHhhhhhHHhhcccchhhcccCCCCCchhhhhhhccCCchHHHHHHHHHhcCCceEEEE
Q 024026 157 LESTLITGWMPTIFRAGRGMTLWEKARPDPPSKKLELFSYENNPYARIVREALCELELPYILQN 220 (273)
Q Consensus 157 ~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~i~ly~~~~s~~~~~v~~~L~e~gi~y~~~~ 220 (273)
.+|+++++|+.+ ..............+ . +...+.....+...+..++..|.+. +|++++
T Consensus 2 ~~ra~~r~w~~~-~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~l~~le~~L~~~--~~l~G~ 60 (107)
T cd03186 2 VARARSRLLMHR-IEQDWYPLVDTIEKG-R-KKEAEKARKELRESLLALAPVFAHK--PYFMSE 60 (107)
T ss_pred hHHHHHHHHHHH-HHHHHHHHHHHHHhC-c-HHHHHHHHHHHHHHHHHHHHHHcCC--CcccCC
Confidence 468899999994 433222111111111 1 2222323334556677788888765 888653
No 364
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=30.63 E-value=1.5e+02 Score=23.68 Aligned_cols=57 Identities=14% Similarity=0.265 Sum_probs=33.0
Q ss_pred CceEEEecC--CCchHHHH--------HHHHHHcCCc-eEEEECCCCChhhHHHHHHhCCC-CcccEEEeC
Q 024026 68 TRLQLFEFE--ACPFCRRV--------REAITELDLS-VEVFPCPKGSIRHREMVRRLGGK-EQFPFLIDP 126 (273)
Q Consensus 68 ~~l~Ly~~~--~~p~~~~v--------r~~L~e~~l~-~~~~~v~~~~~~~~~~~~~~~p~-~~vP~L~d~ 126 (273)
+.+.||.|| +||.|.+- ...++.+|+. +-.+..+.. ....+|. +.... ..+|+|-|+
T Consensus 30 k~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~-~~~~~~~-~~~~~~~~f~lLsD~ 98 (155)
T cd03013 30 KKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDP-FVMKAWG-KALGAKDKIRFLADG 98 (155)
T ss_pred CcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCH-HHHHHHH-HhhCCCCcEEEEECC
Confidence 467788877 58888764 3445555663 544454432 2234444 33333 368999875
No 365
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=30.40 E-value=42 Score=26.46 Aligned_cols=19 Identities=21% Similarity=0.625 Sum_probs=13.8
Q ss_pred ceEEEecCCCchHHHHHHH
Q 024026 69 RLQLFEFEACPFCRRVREA 87 (273)
Q Consensus 69 ~l~Ly~~~~~p~~~~vr~~ 87 (273)
-|..++..|||+|++....
T Consensus 26 vmv~f~sdwC~~Ck~l~k~ 44 (130)
T cd02960 26 LMVIHHLEDCPHSQALKKA 44 (130)
T ss_pred EEEEEeCCcCHhHHHHHHH
Confidence 4455667899999877653
No 366
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=30.38 E-value=93 Score=26.86 Aligned_cols=74 Identities=15% Similarity=0.099 Sum_probs=50.1
Q ss_pred CCceEEEecCCCchHHHHHHHHHHcCCceEEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCcc----ccChHHHHHHH
Q 024026 67 PTRLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVS----MYESGDIVNYL 142 (273)
Q Consensus 67 ~~~l~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~~----l~ES~aI~~YL 142 (273)
+.++++|.+..|--|...-..|+++|+-=.+..++.. .+.|..-.|.--.||.+.. ||.. ..|-.+|-.-|
T Consensus 10 ~~~VkI~~HktC~ssy~Lf~~L~nkgll~~Vkii~a~---~p~f~~~~~~V~SvP~Vf~--DGel~~~dpVdp~~ies~~ 84 (265)
T COG5494 10 EMEVKIFTHKTCVSSYMLFEYLENKGLLGKVKIIDAE---LPPFLAFEKGVISVPSVFI--DGELVYADPVDPEEIESIL 84 (265)
T ss_pred heEEEEEEecchHHHHHHHHHHHhcCCCCCceEEEcC---CChHHHhhcceeecceEEE--cCeEEEcCCCCHHHHHHHH
Confidence 4578999999999999999999999986444444332 2333323456678998875 6764 34566666655
Q ss_pred HHH
Q 024026 143 FQQ 145 (273)
Q Consensus 143 ~~~ 145 (273)
.-+
T Consensus 85 ~G~ 87 (265)
T COG5494 85 SGQ 87 (265)
T ss_pred cCc
Confidence 543
No 367
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=30.37 E-value=89 Score=25.39 Aligned_cols=31 Identities=23% Similarity=0.405 Sum_probs=20.5
Q ss_pred ceEEEecCCCchHHHHHHHH----HHc--CCceEEEE
Q 024026 69 RLQLFEFEACPFCRRVREAI----TEL--DLSVEVFP 99 (273)
Q Consensus 69 ~l~Ly~~~~~p~~~~vr~~L----~e~--~l~~~~~~ 99 (273)
.|.+|.-+.||+|......| ++. ++.++.+.
T Consensus 2 ~i~~~~D~~cp~c~~~~~~l~~l~~~~~~~~~v~~~~ 38 (193)
T cd03025 2 ELYYFIDPLCGWCYGFEPLLEKLKEEYGGGIEVELHL 38 (193)
T ss_pred eEEEEECCCCchhhCchHHHHHHHHHhCCCceEEEEe
Confidence 36788889999997555444 444 55555553
No 368
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=29.72 E-value=83 Score=29.30 Aligned_cols=111 Identities=14% Similarity=0.142 Sum_probs=58.4
Q ss_pred hhhHHHHHHHhcCCCCccc---------ccchhHHHHhhhhhhccccCCcccccCCCCccccCCCCCCCceEEEecCCCc
Q 024026 9 TDSMQSLQTLMQGGDPSRE---------RNDTLEVATSSLSTLARLPWGSRSLSEGSDTQEISNSDSPTRLQLFEFEACP 79 (273)
Q Consensus 9 ~~~~~~~~~~~~~~~p~~~---------~~~~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~~~~~~~l~Ly~~~~~p 79 (273)
..+|.+|.+.+|-..+... .++....+++.++.--|........ ......++.+|..+.+-
T Consensus 82 ~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~----------~~~~~~~~~i~~s~~aH 151 (373)
T PF00282_consen 82 REVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAK----------GVEEIPKPVIYVSEQAH 151 (373)
T ss_dssp HHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHH----------TTTHCSSEEEEEETTS-
T ss_pred HHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhc----------ccccccccccccccccc
Confidence 4678888888885533221 2333344555554433332211111 10113456788887777
Q ss_pred hHHHHHHHHHHcCCceEEEECCCCChhh----HHHHHHhCCCCcccEEEeCCCCcc
Q 024026 80 FCRRVREAITELDLSVEVFPCPKGSIRH----REMVRRLGGKEQFPFLIDPNTGVS 131 (273)
Q Consensus 80 ~~~~vr~~L~e~~l~~~~~~v~~~~~~~----~~~~~~~~p~~~vP~L~d~~~g~~ 131 (273)
+| +.-++..+||....++++....-. +..+.+..-.|.+|+++-.+-|++
T Consensus 152 ~S--~~Kaa~~lGlg~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt 205 (373)
T PF00282_consen 152 YS--IEKAARILGLGVRKIPTDEDGRMDIEALEKALEKDIANGKTPFAVVATAGTT 205 (373)
T ss_dssp TH--HHHHHHHTTSEEEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-T
T ss_pred cH--HHHhcceeeeEEEEecCCcchhhhHHHhhhhhcccccccccceeeeccCCCc
Confidence 77 477888899997777776532212 222223345778996554334443
No 369
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=29.61 E-value=94 Score=25.37 Aligned_cols=23 Identities=13% Similarity=0.329 Sum_probs=20.6
Q ss_pred chHHHHHHHHHHcCCceEEEECC
Q 024026 79 PFCRRVREAITELDLSVEVFPCP 101 (273)
Q Consensus 79 p~~~~vr~~L~e~~l~~~~~~v~ 101 (273)
|.++++...|+++|++|+..-+.
T Consensus 12 ~~~~~a~~~L~~~gi~~dv~V~S 34 (156)
T TIGR01162 12 PTMKKAADILEEFGIPYELRVVS 34 (156)
T ss_pred HHHHHHHHHHHHcCCCeEEEEEC
Confidence 68899999999999999988764
No 370
>PRK09266 hypothetical protein; Provisional
Probab=28.95 E-value=1.3e+02 Score=26.28 Aligned_cols=64 Identities=11% Similarity=0.121 Sum_probs=43.3
Q ss_pred HHHHHHHHcCCceEEEECCCCChhhHHHHHHhCC-CCcccEEEeCCCCccccChHHHHHHHHHHhCC
Q 024026 83 RVREAITELDLSVEVFPCPKGSIRHREMVRRLGG-KEQFPFLIDPNTGVSMYESGDIVNYLFQQYGK 148 (273)
Q Consensus 83 ~vr~~L~e~~l~~~~~~v~~~~~~~~~~~~~~~p-~~~vP~L~d~~~g~~l~ES~aI~~YL~~~~~~ 148 (273)
.+...+..+|++++...+...+-...+.+.-.|- .+-+||... ++..+..+..|.+.|.+.|..
T Consensus 196 ~ll~~~~~~g~~v~e~~i~~~eL~~adevfltnSl~gi~pV~~i--~~~~~~~~~~~~~~l~~~~~~ 260 (266)
T PRK09266 196 LLQRGLERLGIPQRTRPVTLADLGRFAGAFACNAWRGQRAVSAI--DDVALPDSHALLELLRRAYEA 260 (266)
T ss_pred HHHHHHHHcCCeeEEEECCHHHHHHhhHhhhhcCccceEEEEEE--CCEECCCCchHHHHHHHHHHh
Confidence 3444667789999988887554333333323454 588999875 566665567899999888853
No 371
>PRK13190 putative peroxiredoxin; Provisional
Probab=28.86 E-value=1.3e+02 Score=25.30 Aligned_cols=58 Identities=22% Similarity=0.303 Sum_probs=30.4
Q ss_pred CceEEEec--CCCchHHHHHHHHH-------HcCCceEEEECCCCChhhHHHHH---HhCC-CCcccEEEeC
Q 024026 68 TRLQLFEF--EACPFCRRVREAIT-------ELDLSVEVFPCPKGSIRHREMVR---RLGG-KEQFPFLIDP 126 (273)
Q Consensus 68 ~~l~Ly~~--~~~p~~~~vr~~L~-------e~~l~~~~~~v~~~~~~~~~~~~---~~~p-~~~vP~L~d~ 126 (273)
+.+.|+.+ .+||.|..-...|. .+|+.+--+.++... ...++.+ +..+ .-.+|+|.|+
T Consensus 28 k~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~-~~~~w~~~~~~~~g~~~~fPll~D~ 98 (202)
T PRK13190 28 KWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIY-SHIAWLRDIEERFGIKIPFPVIADI 98 (202)
T ss_pred CEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHH-HHHHHHHhHHHhcCCCceEEEEECC
Confidence 34566555 47999976444443 346555445554321 2223332 2233 2368999985
No 372
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=28.68 E-value=2.5e+02 Score=21.03 Aligned_cols=51 Identities=20% Similarity=0.165 Sum_probs=26.8
Q ss_pred ecCCCchHHHHHHHHHHc-----CCceEEEECCC------C-ChhhHHHHHHhCCCCcccEEEeC
Q 024026 74 EFEACPFCRRVREAITEL-----DLSVEVFPCPK------G-SIRHREMVRRLGGKEQFPFLIDP 126 (273)
Q Consensus 74 ~~~~~p~~~~vr~~L~e~-----~l~~~~~~v~~------~-~~~~~~~~~~~~p~~~vP~L~d~ 126 (273)
...+||.|.+-.-.|.++ +..+.++-|.. . ...-.+++ +.+. -..|++.|+
T Consensus 31 ~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~-~~~~-~~~p~~~D~ 93 (126)
T cd03012 31 WTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAV-LRYG-ITYPVANDN 93 (126)
T ss_pred ECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHH-HHcC-CCCCEEECC
Confidence 345899998765555443 23345544422 1 11223444 3333 368988874
No 373
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=28.53 E-value=53 Score=27.97 Aligned_cols=23 Identities=26% Similarity=0.626 Sum_probs=16.9
Q ss_pred eEEEecCCCchHHHHHHHHHHcC
Q 024026 70 LQLFEFEACPFCRRVREAITELD 92 (273)
Q Consensus 70 l~Ly~~~~~p~~~~vr~~L~e~~ 92 (273)
++||+.++|+.|=.+-..|.++.
T Consensus 2 VELFTSQGCsSCPpAD~~L~~l~ 24 (202)
T PF06764_consen 2 VELFTSQGCSSCPPADRLLSELA 24 (202)
T ss_dssp EEEEE-TT-TT-HHHHHHHHHHH
T ss_pred eeEecCCCCCCCcHHHHHHHHhh
Confidence 68999999999988888887774
No 374
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=28.15 E-value=1.3e+02 Score=26.09 Aligned_cols=50 Identities=14% Similarity=0.115 Sum_probs=41.3
Q ss_pred ccCCchHHHHHHHHHhcCCceEEEEcCCCCCCchhHHhhcCCCcccEEEc
Q 024026 196 YENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLID 245 (273)
Q Consensus 196 ~~~s~~~~~v~~~L~e~gi~y~~~~v~~~~~~~~~~~~~~~~~~VP~l~d 245 (273)
.+.|.+.+.+-..|.+.+++|...+|..++.-|..+.+.+.+-..|-|.-
T Consensus 151 ~P~CGFS~~~v~iL~~~nV~~~~fdIL~DeelRqglK~fSdWPTfPQlyI 200 (227)
T KOG0911|consen 151 EPKCGFSRQLVGILQSHNVNYTIFDVLTDEELRQGLKEFSDWPTFPQLYV 200 (227)
T ss_pred cccccccHHHHHHHHHcCCCeeEEeccCCHHHHHHhhhhcCCCCccceeE
Confidence 34688889999999999999999999887766777777788888997654
No 375
>cd03180 GST_C_2 GST_C family, unknown subfamily 2; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=27.75 E-value=45 Score=24.14 Aligned_cols=59 Identities=12% Similarity=0.079 Sum_probs=32.7
Q ss_pred HHHHHHhhhhhHHhhcccch--hhc--c-cCC--CCCchhhhhhhccCCchHHHHHHHHHhcCCceEEE
Q 024026 158 ESTLITGWMPTIFRAGRGMT--LWE--K-ARP--DPPSKKLELFSYENNPYARIVREALCELELPYILQ 219 (273)
Q Consensus 158 ~~~~~~~wl~~~~~~~~~~~--~~~--~-~~~--~~~~~~i~ly~~~~s~~~~~v~~~L~e~gi~y~~~ 219 (273)
+|+++++|++ +..+..... .++ . ..+ ...+..++.........+..++..|.+. +|+++
T Consensus 2 ~ra~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lE~~L~~~--~~l~g 67 (110)
T cd03180 2 ARARADRWMD-WQTSTLNPAFRYAFWGLVRTPPEQRDPAAIAASLAAWAKLMAILDAQLAGR--PYLAG 67 (110)
T ss_pred chhHHHHHHH-HHHhhcChHHHHHHHHHHcCCcccCCHHHHHHHHHHHHHHHHHHHHHhCCC--CcccC
Confidence 4788999998 443333211 111 1 111 1223334444455677888888888765 78754
No 376
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=27.06 E-value=1.1e+02 Score=25.07 Aligned_cols=31 Identities=19% Similarity=0.222 Sum_probs=23.3
Q ss_pred chHHHHHHHHHHcCCceEEEECCCCChhhHHHH
Q 024026 79 PFCRRVREAITELDLSVEVFPCPKGSIRHREMV 111 (273)
Q Consensus 79 p~~~~vr~~L~e~~l~~~~~~v~~~~~~~~~~~ 111 (273)
+...++-..|+++|++|+.+-+.. +++++.+
T Consensus 16 ~~mk~Aa~~L~~fgi~ye~~VvSA--HRTPe~m 46 (162)
T COG0041 16 DTMKKAAEILEEFGVPYEVRVVSA--HRTPEKM 46 (162)
T ss_pred HHHHHHHHHHHHcCCCeEEEEEec--cCCHHHH
Confidence 456788899999999999987753 3445443
No 377
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=27.02 E-value=1.2e+02 Score=25.50 Aligned_cols=58 Identities=17% Similarity=0.288 Sum_probs=29.7
Q ss_pred CceEEEecC--CCchHHHHHHHH-------HHcCCceEEEECCCCChhhHHHHHHh---C-CCCcccEEEeC
Q 024026 68 TRLQLFEFE--ACPFCRRVREAI-------TELDLSVEVFPCPKGSIRHREMVRRL---G-GKEQFPFLIDP 126 (273)
Q Consensus 68 ~~l~Ly~~~--~~p~~~~vr~~L-------~e~~l~~~~~~v~~~~~~~~~~~~~~---~-p~~~vP~L~d~ 126 (273)
+.+.|+.++ +||.|..-.-.| ...|+.+--+.++... ...++...+ . -.-..|+|.|+
T Consensus 26 k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~-~~~~~~~~i~~~~~~~~~fpil~D~ 96 (203)
T cd03016 26 SWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVE-SHIKWIEDIEEYTGVEIPFPIIADP 96 (203)
T ss_pred CEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHH-HHHHHHhhHHHhcCCCCceeEEECc
Confidence 345666554 799997654433 3346655555555321 122232211 1 13457888874
No 378
>cd03179 GST_C_1 GST_C family, unknown subfamily 1; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=26.94 E-value=52 Score=23.63 Aligned_cols=59 Identities=7% Similarity=0.143 Sum_probs=32.2
Q ss_pred HHHHHHhhhhhHHhhcccchh----hc-ccC--CCCCchhhhhhhccCCchHHHHHHHHHhcCCceEEE
Q 024026 158 ESTLITGWMPTIFRAGRGMTL----WE-KAR--PDPPSKKLELFSYENNPYARIVREALCELELPYILQ 219 (273)
Q Consensus 158 ~~~~~~~wl~~~~~~~~~~~~----~~-~~~--~~~~~~~i~ly~~~~s~~~~~v~~~L~e~gi~y~~~ 219 (273)
+|+.+++|+. +..+...... .. ... ....++..+.....+...+..++..|... +|+.+
T Consensus 2 ~ra~~~~wl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~--~~l~g 67 (105)
T cd03179 2 ERAQVLRWLF-FEQYSHEPYIATLRFLRVYLGLGEADAEVLAFLRERGHAALAVLEAHLAGR--DFLVG 67 (105)
T ss_pred cHHHHHHHHH-HhhcccCccceeeeeeEeeccCCCCCHHHHHHHHHHHHHHHHHHHHHHccC--ccccC
Confidence 5788999998 4433222111 11 111 12333444555556667778888888654 67754
No 379
>cd03190 GST_C_ECM4_like GST_C family, ECM4-like subfamily; composed of predominantly uncharacterized and taxonomically diverse proteins with similarity to the translation product of the Saccharomyces cerevisiae gene ECM4. ECM4, a gene of unknown function, is involved in cell surface biosynthesis and architecture. S. cerevisiae ECM4 mutants show increased amounts of the cell wall hexose, N-acetylglucosamine. More recently, global gene expression analysis shows that ECM4 is upregulated during genotoxic conditions and together with the expression profiles of 18 other genes could potentially differentiate between genotoxic and cytotoxic insults in yeast.
Probab=26.43 E-value=47 Score=26.05 Aligned_cols=59 Identities=10% Similarity=0.001 Sum_probs=32.1
Q ss_pred HHHHHHhhhhhHHhhcccchhhcccCCCCCchhhhhhhccCCchHHHHHHHHHhcCCceEEEE
Q 024026 158 ESTLITGWMPTIFRAGRGMTLWEKARPDPPSKKLELFSYENNPYARIVREALCELELPYILQN 220 (273)
Q Consensus 158 ~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~i~ly~~~~s~~~~~v~~~L~e~gi~y~~~~ 220 (273)
.++++.+|+++ .........+.... ...++..+.....+...+..++..|... +|++++
T Consensus 4 ~~a~i~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~LE~~L~~~--~yl~Gd 62 (142)
T cd03190 4 LRSEIDELNEW-IYDNINNGVYKAGF-ATTQEAYDEAVDELFEALDRLEELLSDR--RYLLGD 62 (142)
T ss_pred HHHHHHHHHHH-HHHHHhhHHHHHhh-ccCHHHHHHHHHHHHHHHHHHHHHHccC--CeeeCC
Confidence 46789999984 33222211111111 1223333334445667788888888765 788653
No 380
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=26.16 E-value=1.8e+02 Score=23.48 Aligned_cols=57 Identities=25% Similarity=0.299 Sum_probs=29.0
Q ss_pred CceEEEec--CCCchHHHHHHHH-------HHcCCceEEEECCCCChhhHHHHHHhC------CCCcccEEEeC
Q 024026 68 TRLQLFEF--EACPFCRRVREAI-------TELDLSVEVFPCPKGSIRHREMVRRLG------GKEQFPFLIDP 126 (273)
Q Consensus 68 ~~l~Ly~~--~~~p~~~~vr~~L-------~e~~l~~~~~~v~~~~~~~~~~~~~~~------p~~~vP~L~d~ 126 (273)
+.+.|+.+ .+||.|....-.| ...|+.+-.+.++... ....+. +.. -.-.+|++.|+
T Consensus 30 k~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~-~~~~~~-~~~~~~~~~~~~~f~~l~D~ 101 (173)
T cd03015 30 KWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHF-SHLAWR-NTPRKEGGLGKINFPLLADP 101 (173)
T ss_pred CEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHH-HHHHHH-HhhhhhCCccCcceeEEECC
Confidence 34555554 5799998754444 3345555444444221 222333 221 12368888874
No 381
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=26.13 E-value=2.3e+02 Score=22.82 Aligned_cols=57 Identities=16% Similarity=0.092 Sum_probs=29.1
Q ss_pred ceEEEecC--CCchHHHHHHHHHHc--C-CceEEEECCCCCh-hhHHHHHHhCCCCcccEEEeC
Q 024026 69 RLQLFEFE--ACPFCRRVREAITEL--D-LSVEVFPCPKGSI-RHREMVRRLGGKEQFPFLIDP 126 (273)
Q Consensus 69 ~l~Ly~~~--~~p~~~~vr~~L~e~--~-l~~~~~~v~~~~~-~~~~~~~~~~p~~~vP~L~d~ 126 (273)
.+.|+.++ +||.|.+-.-.|.++ . -.++++-|..+.. ...+|. +..+...+|+|.|+
T Consensus 46 ~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~~~~vv~vs~D~~~~~~~f~-~~~~~~~~~~lsD~ 108 (167)
T PRK00522 46 RKVLNIFPSIDTGVCATSVRKFNQEAAELDNTVVLCISADLPFAQKRFC-GAEGLENVITLSDF 108 (167)
T ss_pred EEEEEEEcCCCCCccHHHHHHHHHHHHHcCCcEEEEEeCCCHHHHHHHH-HhCCCCCceEeecC
Confidence 44555554 499998754444332 0 1344444433322 334555 44444447888773
No 382
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=26.12 E-value=62 Score=22.60 Aligned_cols=20 Identities=25% Similarity=0.624 Sum_probs=14.8
Q ss_pred ceEEEecCCCchHHHHHHHH
Q 024026 69 RLQLFEFEACPFCRRVREAI 88 (273)
Q Consensus 69 ~l~Ly~~~~~p~~~~vr~~L 88 (273)
-+..++..+|+.|++....+
T Consensus 20 vlv~f~a~wC~~C~~l~~~~ 39 (82)
T PF13899_consen 20 VLVDFGADWCPPCKKLEREV 39 (82)
T ss_dssp EEEEEETTTTHHHHHHHHHT
T ss_pred EEEEEECCCCHhHHHHHHHH
Confidence 45666788999998876543
No 383
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=26.00 E-value=55 Score=28.89 Aligned_cols=22 Identities=23% Similarity=0.590 Sum_probs=16.6
Q ss_pred ceEEEecCCCchHHHHHHHHHH
Q 024026 69 RLQLFEFEACPFCRRVREAITE 90 (273)
Q Consensus 69 ~l~Ly~~~~~p~~~~vr~~L~e 90 (273)
.+.+-+.++||+|-.-||+|-.
T Consensus 61 ~v~~igw~gCP~~A~~sW~L~~ 82 (249)
T PF06053_consen 61 EVIFIGWEGCPYCAAESWALYI 82 (249)
T ss_pred EEEEEecccCccchhhHHHHHH
Confidence 3445568899999988887644
No 384
>PTZ00256 glutathione peroxidase; Provisional
Probab=25.59 E-value=3.5e+02 Score=22.07 Aligned_cols=71 Identities=20% Similarity=0.322 Sum_probs=36.3
Q ss_pred EEecCCCchHHHHHHHHHH-------cCCceEEEECCC-C------ChhhHHHHHHhCCCCcccEEEe--CCCCccccCh
Q 024026 72 LFEFEACPFCRRVREAITE-------LDLSVEVFPCPK-G------SIRHREMVRRLGGKEQFPFLID--PNTGVSMYES 135 (273)
Q Consensus 72 Ly~~~~~p~~~~vr~~L~e-------~~l~~~~~~v~~-~------~~~~~~~~~~~~p~~~vP~L~d--~~~g~~l~ES 135 (273)
++-..|||.|++-.-.|.+ .|+.+--++++. . .....+++++..+ -.+|++.| . +|.. .
T Consensus 47 ~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~~-~~fpv~~d~d~-~g~~---~ 121 (183)
T PTZ00256 47 VNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEIKEYVQKKFN-VDFPLFQKIEV-NGEN---T 121 (183)
T ss_pred EEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHHHHHHHHhcC-CCCCCceEEec-CCCC---C
Confidence 4456789999874433432 344444444431 1 1223344432332 35888843 2 2322 3
Q ss_pred HHHHHHHHHHhC
Q 024026 136 GDIVNYLFQQYG 147 (273)
Q Consensus 136 ~aI~~YL~~~~~ 147 (273)
..+..||.+..+
T Consensus 122 ~~~~~~l~~~~~ 133 (183)
T PTZ00256 122 HEIYKYLRRNSE 133 (183)
T ss_pred CHHHHHHHhhCC
Confidence 557778877654
No 385
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=25.37 E-value=2.9e+02 Score=24.35 Aligned_cols=35 Identities=17% Similarity=0.086 Sum_probs=25.1
Q ss_pred CceEEEecCCCchHHHH----HHHHHHcCCceEEEECCC
Q 024026 68 TRLQLFEFEACPFCRRV----REAITELDLSVEVFPCPK 102 (273)
Q Consensus 68 ~~l~Ly~~~~~p~~~~v----r~~L~e~~l~~~~~~v~~ 102 (273)
-.+.++....||+|++- +.+-+..|+++..+.+|.
T Consensus 145 ~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG 183 (248)
T PRK13703 145 YGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDG 183 (248)
T ss_pred ceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCC
Confidence 45666666789999864 445566799888887764
No 386
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=25.21 E-value=1.9e+02 Score=23.85 Aligned_cols=58 Identities=21% Similarity=0.287 Sum_probs=28.4
Q ss_pred CceEEEec--CCCchHHHHHHHH-------HHcCCceEEEECCCCChhhHHHHHHh--CCCCcccEEEeC
Q 024026 68 TRLQLFEF--EACPFCRRVREAI-------TELDLSVEVFPCPKGSIRHREMVRRL--GGKEQFPFLIDP 126 (273)
Q Consensus 68 ~~l~Ly~~--~~~p~~~~vr~~L-------~e~~l~~~~~~v~~~~~~~~~~~~~~--~p~~~vP~L~d~ 126 (273)
+.+.||.+ .+||.|.+-.-.| .+.|+.+--+.++.. .....+.... .-.-.+|+|.|+
T Consensus 32 k~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~-~~~~~~~~~~~~~~~l~fpllsD~ 100 (187)
T TIGR03137 32 KWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTH-FVHKAWHDTSEAIGKITYPMLGDP 100 (187)
T ss_pred CEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCH-HHHHHHHhhhhhccCcceeEEECC
Confidence 35666665 5899998743333 334555444444432 1122222111 112346788774
No 387
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=25.17 E-value=59 Score=22.74 Aligned_cols=18 Identities=33% Similarity=0.562 Sum_probs=14.8
Q ss_pred cCCCchHHHHHHHHHHcC
Q 024026 75 FEACPFCRRVREAITELD 92 (273)
Q Consensus 75 ~~~~p~~~~vr~~L~e~~ 92 (273)
.++||+|++....|.+..
T Consensus 41 ~~~C~~C~~~~~~l~~~~ 58 (127)
T COG0526 41 APWCPPCRAEAPLLEELA 58 (127)
T ss_pred cCcCHHHHhhchhHHHHH
Confidence 789999999988776654
No 388
>cd03187 GST_C_Phi GST_C family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes a
Probab=24.56 E-value=52 Score=24.21 Aligned_cols=60 Identities=8% Similarity=0.082 Sum_probs=31.9
Q ss_pred HHHHHHhhhhhHHhhcccch--h--h---c-ccC-CCCCchhhhhhhccCCchHHHHHHHHHhcCCceEEEE
Q 024026 158 ESTLITGWMPTIFRAGRGMT--L--W---E-KAR-PDPPSKKLELFSYENNPYARIVREALCELELPYILQN 220 (273)
Q Consensus 158 ~~~~~~~wl~~~~~~~~~~~--~--~---~-~~~-~~~~~~~i~ly~~~~s~~~~~v~~~L~e~gi~y~~~~ 220 (273)
+|+++.+|+. +..+..... . + + ... ....+..++.....+...+..++..|+.. +|++++
T Consensus 2 ~ra~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~--~~l~G~ 70 (118)
T cd03187 2 ERAIVEQWLE-VESHQFDPPASALAFELVFKPMLGLPTDEAVVEENEEKLKKVLDVYEARLSKS--KYLAGD 70 (118)
T ss_pred chHHHHHHHH-HHHhhcchhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHcccC--cccCCC
Confidence 5788899998 443333211 1 1 1 111 11223334444445666777888888765 787653
No 389
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=24.46 E-value=25 Score=27.19 Aligned_cols=65 Identities=20% Similarity=0.182 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHcCCceEEEECCCCChhhHHHHHHhCC-CCcccEEEeCC-CCccccChHHHHHHHHHH
Q 024026 80 FCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGG-KEQFPFLIDPN-TGVSMYESGDIVNYLFQQ 145 (273)
Q Consensus 80 ~~~~vr~~L~e~~l~~~~~~v~~~~~~~~~~~~~~~p-~~~vP~L~d~~-~g~~l~ES~aI~~YL~~~ 145 (273)
|-..+++++++.|++.+.+.++.......+.. ..-| .|-+|.++|-. .=...-|...|+.||.++
T Consensus 24 fP~LakEl~e~~g~~I~~~r~~~~~~l~~e~~-~~~~~sGy~PtViD~lrRC~T~EEALEVInylek~ 90 (128)
T PF09868_consen 24 FPALAKELEEEEGISIEGYRLDEEQVLEEEEE-EPDDFSGYNPTVIDYLRRCKTDEEALEVINYLEKR 90 (128)
T ss_pred hHHHHHHHhccCCCceeeeechhhhhhhhccc-cCCCccCCCChHHHHHHHhCcHHHHHHHHHHHHHh
Confidence 55678899999999888765542211111111 1222 57788887631 012455677888888875
No 390
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=24.32 E-value=3.9e+02 Score=23.27 Aligned_cols=29 Identities=14% Similarity=0.363 Sum_probs=16.0
Q ss_pred EEecCCCchHHHHHHHH-------HHcCCceEEEEC
Q 024026 72 LFEFEACPFCRRVREAI-------TELDLSVEVFPC 100 (273)
Q Consensus 72 Ly~~~~~p~~~~vr~~L-------~e~~l~~~~~~v 100 (273)
.+...|||.|++-.-.| ...|+.+.-+++
T Consensus 105 ~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~ 140 (236)
T PLN02399 105 VNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPC 140 (236)
T ss_pred EEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEec
Confidence 33456899997643223 233555544554
No 391
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=24.24 E-value=2e+02 Score=23.97 Aligned_cols=57 Identities=14% Similarity=0.273 Sum_probs=28.4
Q ss_pred CceEEEec--CCCchHHHHHHHH-------HHcCCceEEEECCCCCh-hhHHHHHHhCC--CCcccEEEeC
Q 024026 68 TRLQLFEF--EACPFCRRVREAI-------TELDLSVEVFPCPKGSI-RHREMVRRLGG--KEQFPFLIDP 126 (273)
Q Consensus 68 ~~l~Ly~~--~~~p~~~~vr~~L-------~e~~l~~~~~~v~~~~~-~~~~~~~~~~p--~~~vP~L~d~ 126 (273)
+.+.|+.+ .+||.|.+-...| ..+|+. ++-|..+.. ....|...... .-.+|+|.|+
T Consensus 32 k~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~--vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~ 100 (187)
T PRK10382 32 RWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVD--VYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDP 100 (187)
T ss_pred CeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCE--EEEEeCCCHHHHHHHHHhhccccCCceeEEEcC
Confidence 35566665 5799997733333 333444 444433332 23334322211 3357889874
No 392
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=24.22 E-value=1.2e+02 Score=24.61 Aligned_cols=30 Identities=13% Similarity=0.207 Sum_probs=25.8
Q ss_pred CCCCceEEEecCCCchHHHHHHHHHHcCCc
Q 024026 65 DSPTRLQLFEFEACPFCRRVREAITELDLS 94 (273)
Q Consensus 65 ~~~~~l~Ly~~~~~p~~~~vr~~L~e~~l~ 94 (273)
.+.+++.+|+..+|..+.++.+.|..+|..
T Consensus 114 ~~d~~IVvYC~~G~~~S~~aa~~L~~~G~~ 143 (162)
T TIGR03865 114 DKDRPLVFYCLADCWMSWNAAKRALAYGYS 143 (162)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHhcCCc
Confidence 456789999998898899999999999965
No 393
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=23.75 E-value=3.8e+02 Score=21.33 Aligned_cols=22 Identities=18% Similarity=0.702 Sum_probs=13.6
Q ss_pred eEEEecCCCchHHHHHHHHHHc
Q 024026 70 LQLFEFEACPFCRRVREAITEL 91 (273)
Q Consensus 70 l~Ly~~~~~p~~~~vr~~L~e~ 91 (273)
|..|...+||.|.+....|.++
T Consensus 29 ll~f~~t~Cp~c~~~~~~l~~l 50 (171)
T cd02969 29 VVMFICNHCPYVKAIEDRLNRL 50 (171)
T ss_pred EEEEECCCCccHHHHHHHHHHH
Confidence 3344467999998655555443
No 394
>COG0435 ECM4 Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=23.64 E-value=83 Score=28.34 Aligned_cols=32 Identities=25% Similarity=0.451 Sum_probs=24.9
Q ss_pred cCCCcccEEEcCCCCeee-ccHHHHHHHHHhhc
Q 024026 235 TGSKEVPYLIDPNTSTQI-GDYKKILSYLFQSY 266 (273)
Q Consensus 235 ~~~~~VP~l~d~~~~~~l-~eS~~I~~yL~~~y 266 (273)
++...||+|-|......+ -||..|++-++..|
T Consensus 125 sgRvTVPVLwDk~~~tIVnNES~eIirm~N~aF 157 (324)
T COG0435 125 SGRVTVPVLWDKKTQTIVNNESAEIIRMFNSAF 157 (324)
T ss_pred CCceeEEEEEecCCCeeecCCcHHHHHHHHHHH
Confidence 356689999998766444 79999999887665
No 395
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=23.45 E-value=2.4e+02 Score=21.60 Aligned_cols=57 Identities=12% Similarity=0.152 Sum_probs=30.0
Q ss_pred CceEEEecC--CCchHHHHHHHHHHc-----CCceEEEECCCCChhhHHHHHHhCCCCcccEEEeC
Q 024026 68 TRLQLFEFE--ACPFCRRVREAITEL-----DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDP 126 (273)
Q Consensus 68 ~~l~Ly~~~--~~p~~~~vr~~L~e~-----~l~~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~ 126 (273)
+.+.|+.++ +||.|++-.-.|.++ |+.+-.+.++. .....++. +..+...+|++.|.
T Consensus 27 k~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~vi~Is~d~-~~~~~~~~-~~~~~~~~~~l~D~ 90 (143)
T cd03014 27 KVKVISVFPSIDTPVCATQTKRFNKEAAKLDNTVVLTISADL-PFAQKRWC-GAEGVDNVTTLSDF 90 (143)
T ss_pred CeEEEEEEcCCCCCcCHHHHHHHHHHHHhcCCCEEEEEECCC-HHHHHHHH-HhcCCCCceEeecC
Confidence 345565554 489998766555433 44433344432 12234444 33344468888764
No 396
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=23.12 E-value=1.6e+02 Score=22.49 Aligned_cols=37 Identities=11% Similarity=0.102 Sum_probs=27.3
Q ss_pred CCCCceEEEecCCCchHHHHHHHHHHcCCceEEEECCCC
Q 024026 65 DSPTRLQLFEFEACPFCRRVREAITELDLSVEVFPCPKG 103 (273)
Q Consensus 65 ~~~~~l~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~~ 103 (273)
.+.+++.+|+..+...+.++.++|+.+|.. .+.++-|
T Consensus 84 ~~~~~vvvyC~~~G~rs~~a~~~L~~~G~~--v~~L~GG 120 (128)
T cd01520 84 ERDPKLLIYCARGGMRSQSLAWLLESLGID--VPLLEGG 120 (128)
T ss_pred CCCCeEEEEeCCCCccHHHHHHHHHHcCCc--eeEeCCc
Confidence 345678999865556788888999999974 5566544
No 397
>cd03191 GST_C_Zeta GST_C family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates, but display modest GSH peroxidase activity. They are also implicated in the detoxification of th
Probab=22.95 E-value=66 Score=23.98 Aligned_cols=63 Identities=5% Similarity=-0.123 Sum_probs=32.7
Q ss_pred hHHHHHHhhhhhHHhhcccc---hhhcc-cCC--CC-CchhhhhhhccCCchHHHHHHHHHhcCCceEEEE
Q 024026 157 LESTLITGWMPTIFRAGRGM---TLWEK-ARP--DP-PSKKLELFSYENNPYARIVREALCELELPYILQN 220 (273)
Q Consensus 157 ~~~~~~~~wl~~~~~~~~~~---~~~~~-~~~--~~-~~~~i~ly~~~~s~~~~~v~~~L~e~gi~y~~~~ 220 (273)
.+++.+++|+++ ....... ..+.. ... .. .....+.........+..++..|...+.+|++++
T Consensus 2 ~~ra~~~~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~ 71 (121)
T cd03191 2 KKRARVRALALI-IACDIHPLNNLRVLKYLTEELGLDEEAKNAWYRHWIARGFAALEKLLAQTAGKFCFGD 71 (121)
T ss_pred hhHHHHHHHHHH-HHccCCccccHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeecCC
Confidence 468899999994 4332221 11111 111 11 1222233334456778888998875333688653
No 398
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=22.56 E-value=1.8e+02 Score=23.61 Aligned_cols=61 Identities=18% Similarity=0.224 Sum_probs=38.1
Q ss_pred ceEEEecCCCchHHHHHHHHHHcCCceE----EEECCCCChhhHHHHHHhCCCCcccEEEeCCCCccc
Q 024026 69 RLQLFEFEACPFCRRVREAITELDLSVE----VFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSM 132 (273)
Q Consensus 69 ~l~Ly~~~~~p~~~~vr~~L~e~~l~~~----~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~~l 132 (273)
-|.-|+.+||..|+...-.|+++.-+|. +..++.++ ..+ +.....-..||+++-=.+|..+
T Consensus 64 VlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~--~~e-la~~Y~I~avPtvlvfknGe~~ 128 (150)
T KOG0910|consen 64 VLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDE--HPE-LAEDYEISAVPTVLVFKNGEKV 128 (150)
T ss_pred EEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEcccc--ccc-hHhhcceeeeeEEEEEECCEEe
Confidence 3567778999999999988888755432 33444332 122 2244556789988543356544
No 399
>PRK15000 peroxidase; Provisional
Probab=22.07 E-value=2.8e+02 Score=23.24 Aligned_cols=59 Identities=15% Similarity=0.142 Sum_probs=30.5
Q ss_pred CCceEEEecC--CCchHHHHHHHHH-------HcCCceEEEECCCCChhhHHHH---HHhCC--CCcccEEEeC
Q 024026 67 PTRLQLFEFE--ACPFCRRVREAIT-------ELDLSVEVFPCPKGSIRHREMV---RRLGG--KEQFPFLIDP 126 (273)
Q Consensus 67 ~~~l~Ly~~~--~~p~~~~vr~~L~-------e~~l~~~~~~v~~~~~~~~~~~---~~~~p--~~~vP~L~d~ 126 (273)
.+.+.|+.++ +||-|.+-...|. ++|+.+--+.++.. .....+. .+.++ .-.+|++-|+
T Consensus 34 gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~-~~~~~w~~~~~~~~g~~~i~fpllsD~ 106 (200)
T PRK15000 34 GKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSE-FVHNAWRNTPVDKGGIGPVKYAMVADV 106 (200)
T ss_pred CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCH-HHHHHHHhhHHHhCCccccCceEEECC
Confidence 3467788877 5899987444443 34544333344421 1112221 12233 2368989885
No 400
>cd03185 GST_C_Tau GST_C family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropi
Probab=21.81 E-value=38 Score=25.42 Aligned_cols=58 Identities=12% Similarity=0.033 Sum_probs=29.8
Q ss_pred hHHHHHHhhhhhHHhhcccchhhcccCCCCCchhhhhhhccCCchHHHHHHHHHhcCCceEEE
Q 024026 157 LESTLITGWMPTIFRAGRGMTLWEKARPDPPSKKLELFSYENNPYARIVREALCELELPYILQ 219 (273)
Q Consensus 157 ~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~i~ly~~~~s~~~~~v~~~L~e~gi~y~~~ 219 (273)
.+++++++|+++ ............... . +...+.....+...+..++..|... +|+++
T Consensus 2 ~~ra~~~~w~~~-~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~l~~le~~L~~~--~~l~G 59 (126)
T cd03185 2 YERAVARFWAAF-IDDKLFPAGRKVLAA-K-GEEREKAKEEALEALKVLEEELGGK--PFFGG 59 (126)
T ss_pred hhHHHHHHHHHH-HHHHHHHHHHHHHcc-c-hHHHHHHHHHHHHHHHHHHHHhcCC--CCCCC
Confidence 468899999984 332222111111111 1 2222333334556677788888664 78754
No 401
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=21.51 E-value=68 Score=24.72 Aligned_cols=50 Identities=8% Similarity=0.124 Sum_probs=30.0
Q ss_pred EEecCCCchHHHHHHHHHHcCCc----eEEEECCCCChhhHHHHHHhCCCCcccEEE
Q 024026 72 LFEFEACPFCRRVREAITELDLS----VEVFPCPKGSIRHREMVRRLGGKEQFPFLI 124 (273)
Q Consensus 72 Ly~~~~~p~~~~vr~~L~e~~l~----~~~~~v~~~~~~~~~~~~~~~p~~~vP~L~ 124 (273)
=|+..|||.|+..-..|+++--. ..+..|+.++ .+++ .+...-...|+.+
T Consensus 20 dF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDe--v~dv-a~~y~I~amPtfv 73 (114)
T cd02986 20 RFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDK--VPVY-TQYFDISYIPSTI 73 (114)
T ss_pred EEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccc--cHHH-HHhcCceeCcEEE
Confidence 45567999999998888887533 2233344332 2343 3454455577764
No 402
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=21.35 E-value=76 Score=26.64 Aligned_cols=55 Identities=13% Similarity=0.205 Sum_probs=32.7
Q ss_pred EEEecCCCchHHHHHHHHHHcCCce---EEEECCCCChhhHHHHHHhCCCCcccEEEeCCCCcc
Q 024026 71 QLFEFEACPFCRRVREAITELDLSV---EVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVS 131 (273)
Q Consensus 71 ~Ly~~~~~p~~~~vr~~L~e~~l~~---~~~~v~~~~~~~~~~~~~~~p~~~vP~L~d~~~g~~ 131 (273)
..++.+||+.|+.+.-.|.++--.| .++.|+.. ... ...+-..+|+|+-=.+|..
T Consensus 107 V~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad-----~~~-~~~~i~~lPTlliyk~G~~ 164 (192)
T cd02988 107 VHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIIST-----QCI-PNYPDKNLPTILVYRNGDI 164 (192)
T ss_pred EEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhH-----HhH-hhCCCCCCCEEEEEECCEE
Confidence 3455689999998888777664322 23333321 112 4557778999864345653
No 403
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=21.30 E-value=1.1e+02 Score=24.56 Aligned_cols=32 Identities=25% Similarity=0.622 Sum_probs=20.7
Q ss_pred eEEEecCCCchHHHHHHHHHHc----CCceEEEECC
Q 024026 70 LQLFEFEACPFCRRVREAITEL----DLSVEVFPCP 101 (273)
Q Consensus 70 l~Ly~~~~~p~~~~vr~~L~e~----~l~~~~~~v~ 101 (273)
+..|...|||+|++-.-.|.++ ++.+..++++
T Consensus 54 lvnFWAsWCppCr~e~P~L~~l~~~~~~~Vi~Vs~d 89 (153)
T TIGR02738 54 LVFFYQSTCPYCHQFAPVLKRFSQQFGLPVYAFSLD 89 (153)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHcCCcEEEEEeC
Confidence 5555567999999877666544 5544444544
No 404
>PRK13191 putative peroxiredoxin; Provisional
Probab=21.29 E-value=2.7e+02 Score=23.66 Aligned_cols=59 Identities=15% Similarity=0.238 Sum_probs=30.6
Q ss_pred CceEEEecC--CCchHHHHHHHH-------HHcCCceEEEECCCCChh--hHHHHHHhCC-CCcccEEEeC
Q 024026 68 TRLQLFEFE--ACPFCRRVREAI-------TELDLSVEVFPCPKGSIR--HREMVRRLGG-KEQFPFLIDP 126 (273)
Q Consensus 68 ~~l~Ly~~~--~~p~~~~vr~~L-------~e~~l~~~~~~v~~~~~~--~~~~~~~~~p-~~~vP~L~d~ 126 (273)
+.+.||.|+ +||.|.+-...| .++|+.+--+.++..... ..++.++... .-.+|+|-|+
T Consensus 34 K~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~ 104 (215)
T PRK13191 34 RWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADP 104 (215)
T ss_pred CcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECC
Confidence 356666665 799997744444 344655555555532111 1112222111 3468988875
No 405
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=20.79 E-value=2.2e+02 Score=21.18 Aligned_cols=22 Identities=9% Similarity=0.166 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHcCCceEEEECC
Q 024026 80 FCRRVREAITELDLSVEVFPCP 101 (273)
Q Consensus 80 ~~~~vr~~L~e~~l~~~~~~v~ 101 (273)
-+.+++.++++.|+++++.-+.
T Consensus 16 la~km~~~a~~~gi~~~i~a~~ 37 (99)
T cd05565 16 LANALNKGAKERGVPLEAAAGA 37 (99)
T ss_pred HHHHHHHHHHHCCCcEEEEEee
Confidence 4689999999999999987654
No 406
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=20.48 E-value=2.8e+02 Score=21.74 Aligned_cols=52 Identities=23% Similarity=0.312 Sum_probs=26.2
Q ss_pred EEecCCCchHHHHHHHHHHc-----CCceEEEECCC--------CC-hhhHHHHHHhCCCCcccEEEe
Q 024026 72 LFEFEACPFCRRVREAITEL-----DLSVEVFPCPK--------GS-IRHREMVRRLGGKEQFPFLID 125 (273)
Q Consensus 72 Ly~~~~~p~~~~vr~~L~e~-----~l~~~~~~v~~--------~~-~~~~~~~~~~~p~~~vP~L~d 125 (273)
.|-..||| |++-.-.|.++ +-.+.++-|.. ++ ..-.+|+++..+ -..|++.|
T Consensus 28 ~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~-~~fp~~~d 93 (152)
T cd00340 28 VNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFCETNYG-VTFPMFAK 93 (152)
T ss_pred EEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHHHHhcC-CCceeeee
Confidence 34457899 98755555443 22344444321 11 123455532232 36899875
No 407
>KOG3028 consensus Translocase of outer mitochondrial membrane complex, subunit TOM37/Metaxin 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.35 E-value=1.1e+02 Score=27.74 Aligned_cols=29 Identities=34% Similarity=0.579 Sum_probs=25.0
Q ss_pred cCCCcccEEEcCCCCeeeccHHHHHHHHHh
Q 024026 235 TGSKEVPYLIDPNTSTQIGDYKKILSYLFQ 264 (273)
Q Consensus 235 ~~~~~VP~l~d~~~~~~l~eS~~I~~yL~~ 264 (273)
.+.+++|+|+.+| |..+.....|+.+|.+
T Consensus 45 s~sg~LP~l~~~n-g~~va~~~~iv~~L~k 73 (313)
T KOG3028|consen 45 SPSGKLPYLITDN-GTKVAGPVKIVQFLKK 73 (313)
T ss_pred CCCCCCCeEEecC-CceeccHHHHHHHHHH
Confidence 5788999999875 4678899999999987
No 408
>PF09633 DUF2023: Protein of unknown function (DUF2023); InterPro: IPR018594 This protein of approx.120 residues consists of three beta strands and five alpha helices, thought to fold into a homo-dimer. ; PDB: 2GUK_B.
Probab=20.28 E-value=2.3e+02 Score=21.35 Aligned_cols=34 Identities=9% Similarity=0.090 Sum_probs=24.9
Q ss_pred CceEEEecCCCchHHHHHHHHHHcCCceEEEECCC
Q 024026 68 TRLQLFEFEACPFCRRVREAITELDLSVEVFPCPK 102 (273)
Q Consensus 68 ~~l~Ly~~~~~p~~~~vr~~L~e~~l~~~~~~v~~ 102 (273)
..|.||+.+ .-+..-+..-|+..||+|.+.++..
T Consensus 15 R~LvL~T~~-~~~~~~~~~rL~~~~I~y~iq~v~~ 48 (101)
T PF09633_consen 15 RQLVLHTLP-KRYEEFAIARLERQGIDYFIQPVGN 48 (101)
T ss_dssp -SEEEEEEE-GGGHHHHHHHHHHTT--EEEEE-TS
T ss_pred hhHhhhhCC-HhhHHHHHHHHHHCCCCEEEEEcCC
Confidence 367899986 4577888999999999999998854
Done!