BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024030
         (273 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4F6L|B Chain B, Crystal Structure Of Aureusimine Biosynthetic Cluster
           Reductase Domain
 pdb|4F6L|A Chain A, Crystal Structure Of Aureusimine Biosynthetic Cluster
           Reductase Domain
          Length = 508

 Score = 30.8 bits (68), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 3/88 (3%)

Query: 103 SISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTL 162
           S+   Y Y  +R +   + +   + +AL    DN+SE Q+       LG+L  S     L
Sbjct: 94  SMQTLYQYKTVRQIVNYMYQNQQSLVALP---DNLSELQKIVMSRYNLGILEDSLSHRPL 150

Query: 163 AARFLSTTSAFQAATIVSMLAAAYMRVF 190
               L+  + F  A ++  L     R++
Sbjct: 151 GNTLLTGATGFLGAYLIEALQGYSHRIY 178


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.327    0.136    0.392 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,614,582
Number of Sequences: 62578
Number of extensions: 164827
Number of successful extensions: 362
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 362
Number of HSP's gapped (non-prelim): 1
length of query: 273
length of database: 14,973,337
effective HSP length: 97
effective length of query: 176
effective length of database: 8,903,271
effective search space: 1566975696
effective search space used: 1566975696
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (24.3 bits)