Query 024030
Match_columns 273
No_of_seqs 288 out of 2042
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 08:25:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024030.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024030hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2814 AraJ Arabinose efflux 99.9 6.8E-24 1.5E-28 175.7 21.9 222 7-272 12-237 (394)
2 TIGR00903 2A0129 major facilit 99.9 2.8E-23 6E-28 175.4 20.7 212 21-273 4-219 (368)
3 TIGR02332 HpaX 4-hydroxyphenyl 99.9 8.9E-24 1.9E-28 181.5 17.2 253 7-273 7-269 (412)
4 PRK11646 multidrug resistance 99.9 2E-22 4.3E-27 172.5 23.2 172 11-193 13-187 (400)
5 TIGR00900 2A0121 H+ Antiporter 99.9 1.3E-22 2.9E-27 171.1 21.9 224 13-272 4-237 (365)
6 COG2271 UhpC Sugar phosphate p 99.9 1.5E-23 3.3E-28 172.1 14.8 244 8-273 25-279 (448)
7 PRK11663 regulatory protein Uh 99.9 1.8E-22 3.9E-27 174.6 21.7 238 13-273 28-270 (434)
8 PRK03545 putative arabinose tr 99.9 2E-22 4.4E-27 172.1 21.5 171 12-194 13-187 (390)
9 PRK15403 multidrug efflux syst 99.9 3.3E-22 7.2E-27 171.8 22.8 216 17-272 25-244 (413)
10 PRK10054 putative transporter; 99.9 2E-22 4.4E-27 172.2 20.4 178 7-195 6-186 (395)
11 TIGR00710 efflux_Bcr_CflA drug 99.9 5.5E-22 1.2E-26 168.8 22.6 225 7-272 4-232 (385)
12 PRK10213 nepI ribonucleoside t 99.9 1.3E-21 2.8E-26 167.2 22.9 161 21-193 33-197 (394)
13 PRK14995 methyl viologen resis 99.9 1.2E-21 2.6E-26 172.1 22.4 177 7-195 5-186 (495)
14 PF07690 MFS_1: Major Facilita 99.9 1E-22 2.3E-27 171.0 15.0 227 14-272 2-232 (352)
15 PRK11652 emrD multidrug resist 99.9 3.4E-21 7.5E-26 164.7 23.3 182 1-194 1-186 (394)
16 TIGR00893 2A0114 d-galactonate 99.9 5.3E-22 1.1E-26 168.9 17.8 232 20-272 6-241 (399)
17 KOG1330 Sugar transporter/spin 99.9 1.4E-23 3.1E-28 173.9 7.3 233 8-272 33-270 (493)
18 PRK11195 lysophospholipid tran 99.9 2.8E-21 6.1E-26 165.1 20.9 172 8-195 3-177 (393)
19 PRK10091 MFS transport protein 99.9 3.5E-21 7.6E-26 164.0 21.1 175 8-194 3-181 (382)
20 TIGR00881 2A0104 phosphoglycer 99.9 3.3E-22 7.1E-27 169.4 14.7 233 18-272 5-242 (379)
21 TIGR00897 2A0118 polyol permea 99.9 7.7E-21 1.7E-25 162.9 22.2 229 6-272 11-248 (402)
22 PRK15402 multidrug efflux syst 99.9 8E-21 1.7E-25 163.0 22.3 213 19-271 24-240 (406)
23 TIGR00886 2A0108 nitrite extru 99.9 5.4E-21 1.2E-25 161.7 20.3 234 9-272 2-251 (366)
24 PRK11551 putative 3-hydroxyphe 99.9 1.9E-20 4.1E-25 160.7 22.0 172 13-196 20-195 (406)
25 PRK03633 putative MFS family t 99.9 1.3E-20 2.9E-25 160.4 20.8 153 3-167 1-153 (381)
26 PRK12307 putative sialic acid 99.9 1.6E-20 3.5E-25 162.1 21.3 160 7-178 17-180 (426)
27 PRK10504 putative transporter; 99.9 2.4E-20 5.2E-25 163.1 22.5 176 7-194 9-188 (471)
28 PRK11102 bicyclomycin/multidru 99.9 1.8E-20 4E-25 159.2 20.8 162 22-195 5-170 (377)
29 TIGR00711 efflux_EmrB drug res 99.9 1.2E-20 2.7E-25 165.4 20.3 174 10-195 4-181 (485)
30 PLN00028 nitrate transmembrane 99.9 3.5E-20 7.6E-25 162.0 22.5 230 8-272 36-278 (476)
31 PRK10473 multidrug efflux syst 99.9 6E-20 1.3E-24 156.9 23.4 176 8-195 3-182 (392)
32 PRK11273 glpT sn-glycerol-3-ph 99.9 2.6E-20 5.7E-25 162.0 21.5 215 47-273 59-280 (452)
33 TIGR00885 fucP L-fucose:H+ sym 99.9 4.2E-20 9E-25 158.5 22.4 224 10-272 5-258 (410)
34 PRK09556 uhpT sugar phosphate 99.9 3E-21 6.5E-26 168.5 15.4 231 21-273 42-285 (467)
35 TIGR00891 2A0112 putative sial 99.9 1.2E-20 2.6E-25 161.5 18.6 176 7-195 11-192 (405)
36 PRK10489 enterobactin exporter 99.9 5.1E-20 1.1E-24 158.6 21.9 225 7-272 16-249 (417)
37 TIGR00712 glpT glycerol-3-phos 99.9 3.8E-20 8.2E-25 160.4 20.8 215 47-273 57-278 (438)
38 PRK09874 drug efflux system pr 99.9 8.3E-20 1.8E-24 156.7 22.6 183 5-195 11-197 (408)
39 PRK11043 putative transporter; 99.9 1.3E-19 2.7E-24 155.4 23.0 165 16-193 14-182 (401)
40 PRK10406 alpha-ketoglutarate t 99.9 5.8E-20 1.3E-24 158.9 20.9 168 13-183 27-211 (432)
41 TIGR00895 2A0115 benzoate tran 99.9 1.2E-20 2.6E-25 161.0 15.4 171 14-196 23-197 (398)
42 TIGR00899 2A0120 sugar efflux 99.9 6.7E-20 1.4E-24 155.5 19.2 172 14-196 3-181 (375)
43 TIGR00890 2A0111 Oxalate/Forma 99.9 8.1E-20 1.8E-24 154.7 19.6 159 24-195 19-181 (377)
44 TIGR00894 2A0114euk Na(+)-depe 99.9 1.2E-20 2.5E-25 164.9 14.7 212 45-273 70-288 (465)
45 PRK03699 putative transporter; 99.9 9.3E-20 2E-24 155.9 19.6 170 5-186 4-178 (394)
46 PRK09705 cynX putative cyanate 99.9 6.9E-20 1.5E-24 156.6 18.5 145 25-182 26-175 (393)
47 PRK10133 L-fucose transporter; 99.8 4.3E-19 9.3E-24 153.5 23.0 144 10-165 28-174 (438)
48 KOG2532 Permease of the major 99.8 1.4E-20 3E-25 161.9 13.4 215 44-273 66-285 (466)
49 PRK15034 nitrate/nitrite trans 99.8 4.8E-19 1E-23 151.6 22.5 219 7-272 33-278 (462)
50 PRK09952 shikimate transporter 99.8 1.8E-19 4E-24 156.0 20.2 171 7-182 21-211 (438)
51 PRK05122 major facilitator sup 99.8 9.9E-20 2.1E-24 155.9 17.9 169 5-181 12-189 (399)
52 PRK10642 proline/glycine betai 99.8 3E-19 6.5E-24 156.8 20.7 183 7-196 15-217 (490)
53 PRK12382 putative transporter; 99.8 1.6E-19 3.4E-24 154.3 18.2 163 6-176 13-184 (392)
54 TIGR00887 2A0109 phosphate:H+ 99.8 7.8E-19 1.7E-23 154.7 22.8 180 12-196 20-229 (502)
55 TIGR01299 synapt_SV2 synaptic 99.8 1.2E-19 2.7E-24 163.8 17.3 163 21-196 180-359 (742)
56 KOG3764 Vesicular amine transp 99.8 6E-21 1.3E-25 155.4 7.2 180 12-195 25-251 (464)
57 COG2223 NarK Nitrate/nitrite t 99.8 4.4E-19 9.4E-24 146.1 17.1 227 6-273 12-245 (417)
58 TIGR00805 oat sodium-independe 99.8 5.2E-20 1.1E-24 165.1 12.5 238 21-273 46-357 (633)
59 KOG2615 Permease of the major 99.8 5.6E-20 1.2E-24 148.9 9.8 151 45-200 62-222 (451)
60 PRK15075 citrate-proton sympor 99.8 1.7E-18 3.6E-23 150.0 19.4 168 5-178 12-199 (434)
61 PRK10077 xylE D-xylose transpo 99.8 1.9E-18 4E-23 151.5 19.4 184 11-196 15-219 (479)
62 PF05977 MFS_3: Transmembrane 99.8 6.1E-18 1.3E-22 148.0 22.1 231 6-272 8-244 (524)
63 TIGR00924 yjdL_sub1_fam amino 99.8 3.4E-18 7.3E-23 149.3 19.2 172 5-185 7-186 (475)
64 TIGR00892 2A0113 monocarboxyla 99.8 7.1E-18 1.5E-22 146.8 20.6 214 45-272 48-267 (455)
65 PRK08633 2-acyl-glycerophospho 99.8 3.7E-18 8.1E-23 164.1 20.8 236 6-272 7-258 (1146)
66 PRK06814 acylglycerophosphoeth 99.8 4E-18 8.6E-23 163.8 20.8 236 7-273 10-252 (1140)
67 TIGR00898 2A0119 cation transp 99.8 2.9E-19 6.4E-24 157.6 12.0 148 44-196 117-268 (505)
68 PRK11902 ampG muropeptide tran 99.8 1.5E-17 3.2E-22 142.7 21.9 210 14-262 5-225 (402)
69 TIGR00901 2A0125 AmpG-related 99.8 6E-18 1.3E-22 142.7 19.2 211 25-273 5-236 (356)
70 TIGR00882 2A0105 oligosacchari 99.8 2.9E-18 6.3E-23 146.8 16.7 176 8-193 2-185 (396)
71 TIGR00879 SP MFS transporter, 99.8 5.7E-19 1.2E-23 154.0 12.2 172 22-195 42-220 (481)
72 PRK11010 ampG muropeptide tran 99.8 3.5E-17 7.7E-22 143.5 22.6 177 7-195 11-198 (491)
73 PRK10207 dipeptide/tripeptide 99.8 8.2E-18 1.8E-22 147.1 18.1 169 1-179 7-182 (489)
74 TIGR00902 2A0127 phenyl propri 99.8 1.4E-17 3E-22 141.9 18.7 220 11-273 7-232 (382)
75 PRK11128 putative 3-phenylprop 99.8 9.8E-18 2.1E-22 142.8 17.6 212 16-272 12-231 (382)
76 PRK03893 putative sialic acid 99.8 6E-17 1.3E-21 142.6 22.1 160 7-178 19-182 (496)
77 TIGR00896 CynX cyanate transpo 99.8 3.8E-18 8.2E-23 143.9 13.6 203 23-272 15-223 (355)
78 KOG2533 Permease of the major 99.8 3.8E-18 8.3E-23 147.4 13.7 217 44-273 74-300 (495)
79 PRK15011 sugar efflux transpor 99.8 5.4E-17 1.2E-21 138.8 19.5 178 7-195 14-198 (393)
80 TIGR00806 rfc RFC reduced fola 99.8 1.9E-16 4.1E-21 134.1 22.2 146 45-196 55-207 (511)
81 TIGR00883 2A0106 metabolite-pr 99.8 2.7E-17 5.8E-22 140.0 17.2 172 20-194 5-193 (394)
82 PRK09528 lacY galactoside perm 99.8 1.1E-17 2.5E-22 144.2 14.9 178 6-193 8-193 (420)
83 cd06174 MFS The Major Facilita 99.8 5.9E-17 1.3E-21 135.7 18.7 163 12-186 3-169 (352)
84 KOG0569 Permease of the major 99.8 6.9E-18 1.5E-22 144.2 13.1 150 44-196 54-209 (485)
85 TIGR01301 GPH_sucrose GPH fami 99.8 1.7E-16 3.6E-21 136.9 21.3 238 10-272 6-284 (477)
86 COG0738 FucP Fucose permease [ 99.7 4.1E-16 8.9E-21 128.0 18.8 223 11-273 16-263 (422)
87 TIGR01299 synapt_SV2 synaptic 99.7 4.6E-15 9.9E-20 134.4 23.7 139 53-196 597-738 (742)
88 TIGR00792 gph sugar (Glycoside 99.7 8E-16 1.7E-20 133.3 17.8 220 18-272 9-248 (437)
89 TIGR00889 2A0110 nucleoside tr 99.7 6.5E-15 1.4E-19 126.9 22.2 186 11-197 211-408 (418)
90 PRK15462 dipeptide/tripeptide 99.7 2.8E-15 6E-20 130.0 18.9 171 6-186 7-184 (493)
91 PRK09584 tppB putative tripept 99.7 2.9E-15 6.3E-20 131.7 18.6 168 7-184 20-194 (500)
92 PRK10642 proline/glycine betai 99.7 6.6E-15 1.4E-19 129.4 20.6 171 18-198 260-436 (490)
93 TIGR00889 2A0110 nucleoside tr 99.7 4.3E-15 9.3E-20 128.0 16.9 212 13-268 7-230 (418)
94 KOG0255 Synaptic vesicle trans 99.7 1.7E-16 3.7E-21 140.5 8.3 144 48-197 115-260 (521)
95 TIGR00880 2_A_01_02 Multidrug 99.7 1.9E-15 4.2E-20 109.7 12.2 131 59-193 6-140 (141)
96 TIGR02718 sider_RhtX_FptX side 99.7 3.4E-14 7.4E-19 121.4 21.8 224 10-273 3-235 (390)
97 PF00083 Sugar_tr: Sugar (and 99.6 2.3E-18 4.9E-23 149.8 -5.2 147 49-197 44-197 (451)
98 PTZ00207 hypothetical protein; 99.6 6.5E-14 1.4E-18 123.5 21.9 146 47-195 58-209 (591)
99 PRK10429 melibiose:sodium symp 99.6 4.7E-14 1E-18 123.5 20.4 226 14-272 12-257 (473)
100 PRK09874 drug efflux system pr 99.6 5E-14 1.1E-18 120.9 19.8 169 18-194 229-401 (408)
101 KOG0254 Predicted transporter 99.6 2.5E-14 5.5E-19 126.4 18.1 142 51-197 89-235 (513)
102 PRK10489 enterobactin exporter 99.6 9.5E-14 2.1E-18 119.7 21.1 164 25-199 240-407 (417)
103 PRK05122 major facilitator sup 99.6 2.5E-13 5.5E-18 116.4 22.3 159 20-193 228-390 (399)
104 PRK09528 lacY galactoside perm 99.6 3.4E-14 7.3E-19 122.6 16.7 163 24-194 239-406 (420)
105 PRK11551 putative 3-hydroxyphe 99.6 1.5E-13 3.3E-18 118.0 20.5 158 17-186 229-391 (406)
106 PRK15011 sugar efflux transpor 99.6 2.3E-13 4.9E-18 116.5 19.9 163 18-193 226-392 (393)
107 PF01306 LacY_symp: LacY proto 99.6 2.4E-13 5.1E-18 114.4 18.4 229 5-266 4-240 (412)
108 KOG0252 Inorganic phosphate tr 99.6 2.9E-14 6.2E-19 118.8 12.7 181 15-197 48-251 (538)
109 PRK09556 uhpT sugar phosphate 99.6 2.9E-13 6.2E-18 118.4 19.5 167 9-186 259-444 (467)
110 PRK03893 putative sialic acid 99.6 2.8E-13 6.1E-18 119.4 19.5 143 27-178 294-440 (496)
111 TIGR00892 2A0113 monocarboxyla 99.6 8.5E-14 1.8E-18 121.3 15.8 165 9-185 242-415 (455)
112 PRK12382 putative transporter; 99.6 9.5E-13 2E-17 112.6 21.5 158 20-191 228-389 (392)
113 cd06174 MFS The Major Facilita 99.6 4.4E-13 9.6E-18 112.2 18.7 167 9-186 176-347 (352)
114 PRK09669 putative symporter Ya 99.6 5.8E-13 1.2E-17 115.8 19.5 210 16-263 17-246 (444)
115 TIGR00890 2A0111 Oxalate/Forma 99.6 3.1E-13 6.8E-18 114.3 17.0 164 10-183 207-374 (377)
116 PF06609 TRI12: Fungal trichot 99.6 8.6E-13 1.9E-17 116.0 20.0 134 54-192 81-218 (599)
117 PRK09705 cynX putative cyanate 99.5 1.6E-12 3.5E-17 111.2 21.2 178 9-199 206-389 (393)
118 KOG2325 Predicted transporter/ 99.5 1.8E-13 3.9E-18 116.6 15.0 186 6-200 32-238 (488)
119 TIGR00899 2A0120 sugar efflux 99.5 8.2E-13 1.8E-17 112.1 19.0 165 10-186 201-369 (375)
120 TIGR00902 2A0127 phenyl propri 99.5 1.6E-12 3.6E-17 110.8 20.6 165 7-184 204-372 (382)
121 PF13347 MFS_2: MFS/sugar tran 99.5 1.3E-13 2.8E-18 119.3 13.2 219 18-272 11-251 (428)
122 PRK03633 putative MFS family t 99.5 4.2E-12 9.2E-17 108.2 21.6 153 17-184 209-365 (381)
123 PRK09952 shikimate transporter 99.5 3.3E-12 7.3E-17 110.8 21.2 169 17-194 259-435 (438)
124 PRK10504 putative transporter; 99.5 2.4E-12 5.2E-17 112.8 20.5 152 8-167 261-412 (471)
125 PRK03545 putative arabinose tr 99.5 2.4E-12 5.3E-17 110.0 19.8 170 10-192 207-381 (390)
126 PF05631 DUF791: Protein of un 99.5 1.8E-11 4E-16 100.1 23.6 214 17-270 43-268 (354)
127 PF03825 Nuc_H_symport: Nucleo 99.5 1.3E-12 2.9E-17 111.3 17.4 219 13-273 7-234 (400)
128 PRK09848 glucuronide transport 99.5 3.2E-12 6.9E-17 111.3 20.2 220 14-272 14-254 (448)
129 PRK03699 putative transporter; 99.5 1.6E-12 3.5E-17 111.3 17.1 167 8-186 205-375 (394)
130 KOG2504 Monocarboxylate transp 99.5 4.3E-13 9.4E-18 117.2 13.6 141 47-192 77-222 (509)
131 TIGR00879 SP MFS transporter, 99.5 9.7E-13 2.1E-17 114.8 15.9 162 25-195 301-474 (481)
132 PF05977 MFS_3: Transmembrane 99.5 1.9E-11 4E-16 107.5 23.4 166 10-186 220-389 (524)
133 PF11700 ATG22: Vacuole efflux 99.5 7.7E-12 1.7E-16 108.7 20.8 175 7-193 280-469 (477)
134 PRK11273 glpT sn-glycerol-3-ph 99.5 4.6E-12 1E-16 110.4 19.1 174 8-190 253-434 (452)
135 PRK11663 regulatory protein Uh 99.5 7.6E-12 1.6E-16 108.5 20.3 176 10-194 245-427 (434)
136 TIGR00893 2A0114 d-galactonate 99.5 5.6E-12 1.2E-16 107.2 19.2 170 8-186 215-394 (399)
137 TIGR00897 2A0118 polyol permea 99.5 1.1E-11 2.3E-16 106.5 21.0 171 8-189 222-399 (402)
138 TIGR00883 2A0106 metabolite-pr 99.5 1.8E-12 3.9E-17 110.4 15.0 159 10-177 221-387 (394)
139 PRK11462 putative transporter; 99.4 2.8E-11 6.2E-16 105.5 21.3 141 15-163 16-165 (460)
140 COG3104 PTR2 Dipeptide/tripept 99.4 2.5E-12 5.4E-17 108.9 13.2 180 6-193 19-207 (498)
141 PRK10077 xylE D-xylose transpo 99.4 1.3E-11 2.8E-16 108.3 17.9 142 54-196 309-462 (479)
142 COG2211 MelB Na+/melibiose sym 99.4 3.8E-11 8.1E-16 102.4 19.3 226 13-272 17-262 (467)
143 PRK11128 putative 3-phenylprop 99.4 7.4E-11 1.6E-15 100.6 20.8 162 8-182 205-370 (382)
144 PRK10406 alpha-ketoglutarate t 99.4 4.1E-11 8.9E-16 103.9 19.5 157 21-186 256-419 (432)
145 TIGR00882 2A0105 oligosacchari 99.4 3.8E-11 8.2E-16 102.9 19.0 161 21-189 228-393 (396)
146 PRK12307 putative sialic acid 99.4 4.5E-11 9.9E-16 103.3 19.6 133 26-168 249-381 (426)
147 TIGR00900 2A0121 H+ Antiporter 99.4 3.5E-11 7.5E-16 101.4 18.1 150 9-168 211-361 (365)
148 COG2814 AraJ Arabinose efflux 99.4 7.4E-11 1.6E-15 98.6 19.4 171 6-190 209-385 (394)
149 TIGR00891 2A0112 putative sial 99.4 2.1E-11 4.4E-16 104.4 16.4 135 24-169 254-389 (405)
150 PRK15075 citrate-proton sympor 99.4 5.2E-11 1.1E-15 103.3 19.0 140 19-167 249-391 (434)
151 TIGR00895 2A0115 benzoate tran 99.4 4.2E-11 9E-16 102.2 18.1 141 15-167 257-397 (398)
152 TIGR00898 2A0119 cation transp 99.4 5.8E-11 1.3E-15 104.9 19.3 136 59-197 363-500 (505)
153 PF03825 Nuc_H_symport: Nucleo 99.4 1.5E-10 3.3E-15 98.7 20.9 177 7-194 206-398 (400)
154 PRK15402 multidrug efflux syst 99.4 1.1E-10 2.4E-15 100.3 20.1 150 9-167 216-367 (406)
155 TIGR00712 glpT glycerol-3-phos 99.4 4.5E-11 9.8E-16 103.8 17.5 177 10-195 253-437 (438)
156 PLN00028 nitrate transmembrane 99.4 1.7E-11 3.6E-16 107.5 14.8 151 24-186 268-428 (476)
157 PF11700 ATG22: Vacuole efflux 99.4 1.2E-10 2.6E-15 101.3 19.8 197 50-269 69-304 (477)
158 COG2271 UhpC Sugar phosphate p 99.4 4.1E-11 8.9E-16 99.5 15.9 178 6-192 250-435 (448)
159 PRK14995 methyl viologen resis 99.4 3.6E-11 7.8E-16 106.0 16.8 150 10-167 261-410 (495)
160 PRK11010 ampG muropeptide tran 99.4 1.4E-10 3E-15 102.0 20.4 167 17-194 231-405 (491)
161 TIGR00711 efflux_EmrB drug res 99.4 5.8E-11 1.3E-15 104.3 17.8 151 9-167 256-407 (485)
162 COG2270 Permeases of the major 99.3 6.4E-11 1.4E-15 98.4 16.0 176 7-194 251-431 (438)
163 COG2807 CynX Cyanate permease 99.3 9.4E-11 2E-15 95.5 16.6 202 25-273 29-235 (395)
164 PRK10054 putative transporter; 99.3 1E-10 2.3E-15 100.1 17.6 151 8-167 206-356 (395)
165 KOG0253 Synaptic vesicle trans 99.3 4.1E-11 8.9E-16 97.7 13.9 147 43-196 105-255 (528)
166 TIGR02718 sider_RhtX_FptX side 99.3 2.4E-10 5.1E-15 97.8 19.4 166 10-184 210-384 (390)
167 PRK08633 2-acyl-glycerophospho 99.3 8.4E-11 1.8E-15 113.7 18.3 147 10-167 234-381 (1146)
168 PRK10091 MFS transport protein 99.3 2.6E-10 5.6E-15 97.3 19.2 152 23-186 214-371 (382)
169 COG2223 NarK Nitrate/nitrite t 99.3 6E-11 1.3E-15 98.4 14.5 177 7-192 217-402 (417)
170 TIGR00887 2A0109 phosphate:H+ 99.3 5.1E-11 1.1E-15 105.2 15.0 137 59-197 343-494 (502)
171 TIGR00792 gph sugar (Glycoside 99.3 1.2E-10 2.6E-15 101.0 16.8 149 8-167 222-377 (437)
172 KOG2816 Predicted transporter 99.3 3.6E-10 7.9E-15 97.5 18.6 180 14-201 24-209 (463)
173 PRK15034 nitrate/nitrite trans 99.3 5.8E-10 1.3E-14 96.1 19.3 177 7-193 251-456 (462)
174 TIGR00788 fbt folate/biopterin 99.3 5.1E-10 1.1E-14 97.9 18.9 171 11-195 29-212 (468)
175 TIGR00903 2A0129 major facilit 99.3 5.5E-10 1.2E-14 94.7 18.5 170 8-194 192-367 (368)
176 PRK06814 acylglycerophosphoeth 99.3 2.2E-10 4.7E-15 110.7 18.0 149 8-167 225-393 (1140)
177 PRK11195 lysophospholipid tran 99.3 7.1E-10 1.5E-14 95.0 19.0 149 25-185 222-374 (393)
178 TIGR02332 HpaX 4-hydroxyphenyl 99.3 2.4E-10 5.2E-15 98.5 16.1 160 10-179 244-409 (412)
179 KOG0569 Permease of the major 99.3 6.4E-10 1.4E-14 95.7 18.2 171 20-200 282-463 (485)
180 PRK11646 multidrug resistance 99.3 3.3E-10 7.2E-15 97.2 16.5 129 27-167 227-356 (400)
181 PF01306 LacY_symp: LacY proto 99.3 5.1E-09 1.1E-13 88.5 22.7 181 8-196 220-405 (412)
182 KOG4686 Predicted sugar transp 99.2 7.5E-10 1.6E-14 87.4 16.1 149 6-167 262-411 (459)
183 PF03137 OATP: Organic Anion T 99.2 9.6E-13 2.1E-17 115.9 -0.2 229 43-273 30-332 (539)
184 PRK09848 glucuronide transport 99.2 6.1E-10 1.3E-14 97.0 17.1 152 7-167 227-385 (448)
185 PRK10213 nepI ribonucleoside t 99.2 2.8E-09 6E-14 91.4 20.8 162 8-183 216-383 (394)
186 TIGR00896 CynX cyanate transpo 99.2 1E-09 2.3E-14 92.6 17.9 146 9-167 198-345 (355)
187 PF07690 MFS_1: Major Facilita 99.2 3.3E-10 7.1E-15 95.1 14.7 141 13-161 211-352 (352)
188 PRK11902 ampG muropeptide tran 99.2 2.5E-09 5.5E-14 91.8 20.2 134 47-187 241-386 (402)
189 TIGR00894 2A0114euk Na(+)-depe 99.2 1.4E-09 3E-14 95.3 17.9 167 9-186 262-445 (465)
190 TIGR00901 2A0125 AmpG-related 99.2 7.1E-10 1.5E-14 93.6 15.0 136 10-154 211-355 (356)
191 TIGR00881 2A0104 phosphoglycer 99.2 7.7E-10 1.7E-14 93.7 15.2 150 9-167 217-369 (379)
192 TIGR01272 gluP glucose/galacto 99.2 4.4E-09 9.5E-14 87.1 19.1 148 9-168 141-288 (310)
193 PF03209 PUCC: PUCC protein; 99.2 5.4E-09 1.2E-13 87.1 19.4 200 45-272 9-234 (403)
194 KOG2504 Monocarboxylate transp 99.2 6.9E-10 1.5E-14 97.3 14.3 172 8-192 298-476 (509)
195 TIGR00710 efflux_Bcr_CflA drug 99.2 4.3E-09 9.2E-14 89.6 18.3 146 10-164 208-356 (385)
196 COG2270 Permeases of the major 99.2 3.9E-10 8.5E-15 93.8 11.3 216 25-264 32-270 (438)
197 PRK10473 multidrug efflux syst 99.1 1E-08 2.2E-13 87.8 20.0 139 27-178 222-361 (392)
198 PRK10429 melibiose:sodium symp 99.1 9E-10 1.9E-14 96.6 13.3 150 8-167 231-390 (473)
199 PRK11102 bicyclomycin/multidru 99.1 7.3E-09 1.6E-13 88.1 18.6 147 11-166 197-345 (377)
200 KOG3626 Organic anion transpor 99.1 3.2E-10 7E-15 100.9 10.3 220 45-273 126-419 (735)
201 PF13347 MFS_2: MFS/sugar tran 99.1 5.9E-09 1.3E-13 90.3 17.2 151 7-167 224-381 (428)
202 TIGR00924 yjdL_sub1_fam amino 99.1 1.7E-08 3.8E-13 88.5 20.1 176 13-192 277-469 (475)
203 PRK10133 L-fucose transporter; 99.1 2.3E-08 4.9E-13 86.9 19.2 144 11-167 261-404 (438)
204 PRK11652 emrD multidrug resist 99.1 2.3E-08 5E-13 85.6 19.0 149 22-180 221-370 (394)
205 PRK11043 putative transporter; 99.1 3.5E-08 7.7E-13 84.7 20.0 136 23-169 218-356 (401)
206 PRK09669 putative symporter Ya 99.1 9.1E-09 2E-13 89.6 16.5 112 54-167 267-385 (444)
207 PRK10207 dipeptide/tripeptide 99.1 2E-08 4.3E-13 88.3 18.6 144 20-167 281-438 (489)
208 KOG3762 Predicted transporter 99.0 4.4E-09 9.5E-14 89.9 12.7 162 13-186 376-542 (618)
209 KOG2563 Permease of the major 99.0 2.4E-08 5.2E-13 83.9 15.4 194 49-267 77-287 (480)
210 KOG0253 Synaptic vesicle trans 99.0 7E-09 1.5E-13 84.9 11.9 126 61-192 391-519 (528)
211 TIGR01272 gluP glucose/galacto 99.0 4.3E-09 9.3E-14 87.1 10.9 137 107-273 10-167 (310)
212 COG2807 CynX Cyanate permease 99.0 1.4E-07 3.1E-12 77.3 18.3 164 10-186 210-380 (395)
213 PF01770 Folate_carrier: Reduc 99.0 2.7E-07 5.9E-12 77.9 20.3 130 61-196 51-186 (412)
214 KOG2532 Permease of the major 99.0 5.1E-08 1.1E-12 84.6 16.3 170 7-186 257-442 (466)
215 TIGR00769 AAA ADP/ATP carrier 98.9 1.6E-06 3.4E-11 75.2 23.3 232 7-265 6-283 (472)
216 PF06813 Nodulin-like: Nodulin 98.9 1.1E-07 2.4E-12 75.4 15.0 147 46-195 32-185 (250)
217 PRK09584 tppB putative tripept 98.9 1.4E-07 3.1E-12 83.3 16.8 131 53-184 318-472 (500)
218 TIGR00886 2A0108 nitrite extru 98.9 2.9E-08 6.4E-13 83.9 11.9 139 9-156 226-365 (366)
219 TIGR01301 GPH_sucrose GPH fami 98.9 5.9E-07 1.3E-11 78.2 19.8 189 7-196 257-476 (477)
220 COG2211 MelB Na+/melibiose sym 98.9 1.4E-07 3E-12 80.9 15.2 152 7-167 235-393 (467)
221 TIGR00885 fucP L-fucose:H+ sym 98.8 6.3E-07 1.4E-11 77.2 18.4 149 8-169 232-380 (410)
222 COG0477 ProP Permeases of the 98.8 1.2E-06 2.6E-11 71.4 18.7 156 17-180 11-174 (338)
223 PRK11462 putative transporter; 98.8 2.5E-06 5.3E-11 74.7 20.9 112 54-167 266-384 (460)
224 TIGR00788 fbt folate/biopterin 98.8 7.3E-08 1.6E-12 84.4 11.4 123 44-167 281-410 (468)
225 KOG0637 Sucrose transporter an 98.8 2.3E-08 5E-13 84.0 7.7 153 9-170 33-205 (498)
226 PRK15403 multidrug efflux syst 98.8 1E-06 2.2E-11 76.0 17.7 165 8-183 218-389 (413)
227 KOG0252 Inorganic phosphate tr 98.7 2.8E-08 6E-13 83.6 7.0 190 9-200 305-506 (538)
228 KOG0254 Predicted transporter 98.7 6.8E-07 1.5E-11 79.3 14.6 182 7-199 294-491 (513)
229 PF03209 PUCC: PUCC protein; 98.6 7.7E-06 1.7E-10 68.6 18.3 148 12-167 212-360 (403)
230 PF12832 MFS_1_like: MFS_1 lik 98.6 4.3E-07 9.4E-12 58.3 8.3 68 15-90 7-74 (77)
231 TIGR00926 2A1704 Peptide:H+ sy 98.6 2.2E-06 4.7E-11 77.6 15.6 154 25-186 4-177 (654)
232 PF03092 BT1: BT1 family; Int 98.5 1.3E-05 2.8E-10 69.6 18.3 145 47-193 21-177 (433)
233 PF06609 TRI12: Fungal trichot 98.5 8.2E-06 1.8E-10 72.6 16.5 150 8-163 310-460 (599)
234 KOG4686 Predicted sugar transp 98.5 1.2E-08 2.5E-13 80.8 -1.1 119 47-166 75-194 (459)
235 PF05978 UNC-93: Ion channel r 98.4 3E-05 6.6E-10 57.0 15.4 101 61-166 47-147 (156)
236 PRK15462 dipeptide/tripeptide 98.4 6.2E-05 1.3E-09 66.0 19.3 142 22-167 282-437 (493)
237 COG0738 FucP Fucose permease [ 98.4 3.4E-05 7.4E-10 64.5 15.6 150 7-170 235-384 (422)
238 KOG2533 Permease of the major 98.3 9.1E-06 2E-10 71.1 12.4 160 8-178 273-443 (495)
239 PF06779 DUF1228: Protein of u 98.3 4.3E-06 9.3E-11 54.3 7.7 75 21-103 5-79 (85)
240 PF00083 Sugar_tr: Sugar (and 98.3 7.4E-10 1.6E-14 96.5 -13.5 138 61-199 296-444 (451)
241 PF06963 FPN1: Ferroportin1 (F 98.3 0.00012 2.5E-09 63.1 17.8 170 8-186 2-195 (432)
242 KOG0255 Synaptic vesicle trans 98.3 0.00023 4.9E-09 63.5 20.1 137 63-200 362-501 (521)
243 KOG3764 Vesicular amine transp 98.3 4.2E-06 9E-11 69.6 8.1 166 10-186 272-449 (464)
244 PF02487 CLN3: CLN3 protein; 98.2 0.00022 4.8E-09 60.5 17.2 132 54-194 62-198 (402)
245 PF03219 TLC: TLC ATP/ADP tran 98.1 0.0011 2.4E-08 58.1 20.0 185 63-265 71-299 (491)
246 COG3104 PTR2 Dipeptide/tripept 97.9 0.0016 3.4E-08 56.3 16.8 154 29-186 305-482 (498)
247 KOG4332 Predicted sugar transp 97.8 7.7E-05 1.7E-09 59.2 6.9 78 54-136 75-153 (454)
248 KOG2816 Predicted transporter 97.8 0.00089 1.9E-08 58.4 14.2 118 45-167 271-389 (463)
249 KOG2615 Permease of the major 97.8 0.00047 1E-08 57.4 11.6 119 45-167 291-411 (451)
250 COG3202 ATP/ADP translocase [E 97.8 0.012 2.5E-07 51.0 19.8 198 51-266 61-302 (509)
251 KOG3098 Uncharacterized conser 97.7 0.0019 4.1E-08 55.9 14.7 102 57-163 56-157 (461)
252 KOG3574 Acetyl-CoA transporter 97.7 0.0035 7.6E-08 52.4 14.9 227 6-270 29-289 (510)
253 PF00854 PTR2: POT family; In 97.6 0.00057 1.2E-08 58.2 10.0 104 82-186 2-118 (372)
254 PTZ00207 hypothetical protein; 97.6 0.00092 2E-08 60.0 11.2 173 7-189 352-550 (591)
255 PF13000 Acatn: Acetyl-coenzym 97.6 0.0024 5.2E-08 55.2 12.7 38 124-161 134-171 (544)
256 KOG3098 Uncharacterized conser 97.5 0.0066 1.4E-07 52.6 15.4 153 9-167 241-411 (461)
257 KOG2563 Permease of the major 97.3 0.00033 7.1E-09 59.6 4.9 116 51-167 301-418 (480)
258 PF06963 FPN1: Ferroportin1 (F 97.3 0.029 6.3E-07 48.6 16.7 140 27-175 277-423 (432)
259 PRK03612 spermidine synthase; 97.3 0.054 1.2E-06 48.3 18.3 119 47-167 46-168 (521)
260 KOG3762 Predicted transporter 97.0 0.00046 9.9E-09 60.0 2.6 78 17-102 20-98 (618)
261 PF02487 CLN3: CLN3 protein; 96.8 0.09 1.9E-06 45.0 15.0 108 52-167 282-394 (402)
262 PF03092 BT1: BT1 family; Int 96.7 0.016 3.5E-07 50.4 10.1 147 48-196 252-417 (433)
263 KOG3810 Micronutrient transpor 96.6 0.011 2.3E-07 49.0 7.3 97 66-167 57-153 (433)
264 TIGR00805 oat sodium-independe 96.6 0.0077 1.7E-07 55.1 7.3 81 9-96 331-414 (633)
265 KOG1237 H+/oligopeptide sympor 95.8 0.22 4.8E-06 44.9 12.2 167 12-186 41-240 (571)
266 KOG1330 Sugar transporter/spin 95.5 0.053 1.2E-06 46.7 7.0 111 55-167 287-409 (493)
267 KOG3880 Predicted small molecu 94.7 0.29 6.3E-06 40.2 8.4 132 54-194 65-202 (409)
268 TIGR00806 rfc RFC reduced fola 94.2 2.4 5.1E-05 37.5 13.5 98 52-153 299-398 (511)
269 TIGR00939 2a57 Equilibrative N 94.0 2.9 6.3E-05 36.6 14.1 112 52-165 308-429 (437)
270 KOG4332 Predicted sugar transp 93.7 1.7 3.8E-05 35.2 10.9 132 54-186 285-426 (454)
271 KOG2325 Predicted transporter/ 93.1 0.43 9.2E-06 41.9 7.3 136 47-183 298-467 (488)
272 PF03137 OATP: Organic Anion T 93.0 0.028 6.2E-07 50.3 0.0 151 9-167 306-511 (539)
273 PF01770 Folate_carrier: Reduc 92.7 2.3 5.1E-05 36.6 11.1 97 51-151 285-383 (412)
274 KOG1479 Nucleoside transporter 91.2 2.8 6.1E-05 36.0 9.7 129 25-163 260-398 (406)
275 TIGR00880 2_A_01_02 Multidrug 91.1 3.8 8.2E-05 28.5 10.0 39 52-90 88-126 (141)
276 KOG0637 Sucrose transporter an 89.5 3.9 8.5E-05 35.7 9.2 112 5-119 276-397 (498)
277 TIGR00939 2a57 Equilibrative N 88.5 16 0.00036 32.0 20.4 101 54-160 48-153 (437)
278 KOG3880 Predicted small molecu 87.0 4.5 9.8E-05 33.5 7.7 66 96-165 334-399 (409)
279 KOG3626 Organic anion transpor 82.9 3.2 7E-05 38.5 5.8 81 8-95 392-475 (735)
280 KOG3810 Micronutrient transpor 81.3 22 0.00048 30.2 9.4 97 52-152 272-370 (433)
281 COG5336 Uncharacterized protei 80.2 14 0.00031 25.1 6.6 27 52-78 43-69 (116)
282 KOG1479 Nucleoside transporter 79.7 40 0.00087 29.2 16.6 49 25-78 35-83 (406)
283 PF01733 Nucleoside_tran: Nucl 78.9 0.82 1.8E-05 37.9 0.7 109 55-164 186-304 (309)
284 PF07672 MFS_Mycoplasma: Mycop 77.1 7.9 0.00017 31.2 5.6 46 141-186 3-57 (267)
285 PF07857 DUF1632: CEO family ( 76.4 39 0.00084 27.2 12.2 10 251-260 188-197 (254)
286 PF00854 PTR2: POT family; In 69.4 42 0.00092 28.5 8.8 89 11-101 34-122 (372)
287 KOG3097 Predicted membrane pro 68.1 49 0.0011 28.0 8.2 68 65-137 72-139 (390)
288 PF11947 DUF3464: Protein of u 59.0 39 0.00084 24.8 5.6 48 108-159 98-145 (153)
289 KOG2601 Iron transporter [Inor 56.6 1.3E+02 0.0029 26.1 14.9 74 10-90 29-102 (503)
290 PF12805 FUSC-like: FUSC-like 56.6 1.1E+02 0.0024 25.0 9.5 11 108-118 24-34 (284)
291 PF05631 DUF791: Protein of un 53.7 1.4E+02 0.0031 25.4 19.5 157 7-165 118-299 (354)
292 PF11299 DUF3100: Protein of u 51.4 43 0.00094 26.4 5.0 51 114-166 178-228 (241)
293 COG1268 BioY Uncharacterized c 48.0 81 0.0018 24.0 6.0 20 61-80 92-111 (184)
294 PRK03612 spermidine synthase; 43.7 2.5E+02 0.0054 25.4 12.1 32 51-82 54-85 (521)
295 KOG4830 Predicted sugar transp 43.4 42 0.00091 27.4 4.0 63 14-84 23-94 (412)
296 TIGR01666 YCCS hypothetical me 42.8 2.8E+02 0.0061 26.3 9.8 47 71-119 43-93 (704)
297 PF07672 MFS_Mycoplasma: Mycop 41.4 1.4E+02 0.003 24.3 6.6 63 57-119 147-216 (267)
298 PRK02237 hypothetical protein; 40.2 78 0.0017 21.7 4.3 46 53-98 58-103 (109)
299 KOG2881 Predicted membrane pro 38.5 2.1E+02 0.0045 23.3 7.0 16 245-260 206-221 (294)
300 TIGR01667 YCCS_YHJK integral m 38.4 3.5E+02 0.0077 25.6 10.0 48 70-119 42-93 (701)
301 COG4262 Predicted spermidine s 38.2 2.6E+02 0.0057 24.1 14.8 29 106-135 104-132 (508)
302 KOG1237 H+/oligopeptide sympor 38.0 1.6E+02 0.0035 27.0 7.3 61 106-167 457-517 (571)
303 PF02694 UPF0060: Uncharacteri 37.9 66 0.0014 21.9 3.7 47 53-99 56-102 (107)
304 PF13493 DUF4118: Domain of un 37.9 85 0.0018 20.9 4.5 21 61-81 85-105 (105)
305 PF12273 RCR: Chitin synthesis 37.1 19 0.0004 25.6 1.1 14 170-183 1-14 (130)
306 KOG3097 Predicted membrane pro 36.7 2.7E+02 0.0059 23.8 7.9 74 46-119 305-379 (390)
307 PF06783 UPF0239: Uncharacteri 35.9 1.1E+02 0.0023 19.9 4.2 20 170-189 23-42 (85)
308 PF02632 BioY: BioY family; I 34.1 1.7E+02 0.0037 21.4 5.7 23 60-82 62-84 (148)
309 PF04281 Tom22: Mitochondrial 33.1 1.9E+02 0.0041 20.9 7.1 29 132-160 59-87 (137)
310 TIGR00926 2A1704 Peptide:H+ sy 33.1 4.2E+02 0.0091 24.9 11.0 60 107-167 565-624 (654)
311 PF13000 Acatn: Acetyl-coenzym 32.4 3.9E+02 0.0084 24.3 12.1 46 112-158 410-455 (544)
312 PF03219 TLC: TLC ATP/ADP tran 31.9 3.8E+02 0.0083 24.1 10.7 74 10-87 282-355 (491)
313 PF10183 ESSS: ESSS subunit of 31.8 89 0.0019 21.3 3.7 28 168-195 58-85 (105)
314 PF09527 ATPase_gene1: Putativ 30.8 1.1E+02 0.0025 17.7 5.7 30 61-90 10-40 (55)
315 TIGR02230 ATPase_gene1 F0F1-AT 29.8 1.8E+02 0.0039 19.7 7.2 29 62-90 53-82 (100)
316 TIGR00769 AAA ADP/ATP carrier 29.0 4.2E+02 0.0092 23.7 19.7 76 13-92 269-344 (472)
317 TIGR00986 3a0801s05tom22 mitoc 27.7 2.4E+02 0.0053 20.5 6.3 27 131-157 56-82 (145)
318 COG3559 TnrB3 Putative exporte 27.6 4.3E+02 0.0094 23.4 7.7 27 121-147 174-200 (536)
319 TIGR03802 Asp_Ala_antiprt aspa 26.7 4.3E+02 0.0093 24.3 8.2 42 50-93 449-490 (562)
320 PF01733 Nucleoside_tran: Nucl 25.8 23 0.00049 29.4 0.0 22 117-140 7-28 (309)
321 PF03547 Mem_trans: Membrane t 25.4 4.2E+02 0.0092 22.5 14.1 19 240-258 239-257 (385)
322 PRK11588 hypothetical protein; 23.7 5.5E+02 0.012 23.2 11.0 30 72-101 137-168 (506)
323 PF06912 DUF1275: Protein of u 23.0 3.5E+02 0.0077 20.7 16.1 30 65-94 60-92 (209)
324 PF04226 Transgly_assoc: Trans 22.1 1.7E+02 0.0036 16.6 5.3 32 155-186 6-41 (48)
325 PF04341 DUF485: Protein of un 21.8 2.4E+02 0.0053 18.5 7.0 32 7-38 15-46 (91)
326 PF07760 DUF1616: Protein of u 21.5 4.6E+02 0.01 21.5 10.2 55 111-167 23-77 (287)
327 PF11752 DUF3309: Protein of u 21.4 85 0.0018 18.0 1.7 34 61-94 8-41 (49)
No 1
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.93 E-value=6.8e-24 Score=175.75 Aligned_cols=222 Identities=18% Similarity=0.207 Sum_probs=188.2
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHH
Q 024030 7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL 86 (273)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~ 86 (273)
+..++.+.+..|......+.....+|...+|. +.+...+|...+.|.++..+++|+...++||+.||++++.
T Consensus 12 ~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl--------~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~ 83 (394)
T COG2814 12 WLALLALALAAFAIGTTEFVPVGLLPPIAADL--------GVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLG 83 (394)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHhchHHHHHHc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHH
Confidence 33556667777888888899999999998775 7788899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024030 87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF 166 (273)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~ 166 (273)
...+++++.++.+++++ ++.+++.|++.|+ ..|.+++...+...++.|+++|++++++...+..++.++|..++.+
T Consensus 84 ~l~lFi~~n~l~alAp~---f~~Ll~aR~~~g~-a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ 159 (394)
T COG2814 84 LLALFIVSNLLSALAPS---FAVLLLARALAGL-AHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTF 159 (394)
T ss_pred HHHHHHHHHHHHHHhcc---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHH
Confidence 99999999999999999 9999999999998 7788889999999999999999999999999999999888776665
Q ss_pred h----hhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchHHHHHHHH
Q 024030 167 L----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLL 242 (273)
Q Consensus 167 l----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 242 (273)
+ |||.+|...+.+.++..+..+..+| +++.+++ ++. +.++.++ +
T Consensus 160 ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP--~~~~~~~-----------------------~~~------~~~~~~~-~ 207 (394)
T COG2814 160 LGQLFGWRATFLAIAVLALLALLLLWKLLP--PSEISGS-----------------------LPG------PLRTLLR-L 207 (394)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhCC--CccCCCC-----------------------CCc------chhHHHH-H
Confidence 5 9999999999999998888888888 1111110 000 1222222 6
Q ss_pred hhcchhHHHHHHHHHhccccccceeeeecc
Q 024030 243 RSSVTLSQAAVVAFFSGLSEGGMQASFLVY 272 (273)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 272 (273)
.|+|+++...+..++...+++..++++..|
T Consensus 208 l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~ 237 (394)
T COG2814 208 LRRPGVLLGLLATFLFMTGHFALYTYIRPF 237 (394)
T ss_pred hcCchHHHHHHHHHHHHcchhhhHHhHHHH
Confidence 678999999999999999999988887665
No 2
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.92 E-value=2.8e-23 Score=175.43 Aligned_cols=212 Identities=13% Similarity=-0.008 Sum_probs=163.0
Q ss_pred HHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHh
Q 024030 21 GFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAY 100 (273)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~ 100 (273)
........+.+|.+.+|. +.+..+.|++.+.+.+++.+++++.|+++||+|||+++..+......+......
T Consensus 4 ~~~~~~~~~~lp~i~~~~--------~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~ 75 (368)
T TIGR00903 4 QAIWVTFSPVLSLVAEDI--------DVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLD 75 (368)
T ss_pred hHHHHHHHhhHHHHHHHh--------CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHH
Confidence 444556678888886553 667788899999999999999999999999999998876655555444332223
Q ss_pred ccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHH
Q 024030 101 RRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----STTSAFQAA 176 (273)
Q Consensus 101 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l----~~~~~~~~~ 176 (273)
.++ ++.+++.|++.|+ +.+.. ....+.++|++|+++|++++++...+..+|..+++.++..+ +||+.|.+.
T Consensus 76 ~~~---~~~l~~~R~l~G~-g~~~~-~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~ 150 (368)
T TIGR00903 76 PFN---YEWLLACQLLAAL-GQPFL-LNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPI 150 (368)
T ss_pred hcc---HHHHHHHHHHHHh-HhHHH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHH
Confidence 255 8899999999998 55554 56666779999999999999999999999999999888877 999999998
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchHHHHHHHHhhcchhHHHHHHHH
Q 024030 177 TIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAF 256 (273)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 256 (273)
+++.++..++.++.+||+++.++++ . +. + +..+.++.++|||.++...+..+
T Consensus 151 ~~l~~~~~~~~~~~lp~~p~~~~~~----------------------~--~~-~---~~~~~~~~ll~~~~~~~~~~~~~ 202 (368)
T TIGR00903 151 AAVAAAGIILVLAALPALPFQAAEG----------------------F--GF-K---DAVKEFGALAGRKDLWIIGAILG 202 (368)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCCCC----------------------c--ch-H---HHHHHHHHHHcChhHHHHHHHHH
Confidence 8888777776677788865432110 0 00 0 00112344778999999999999
Q ss_pred HhccccccceeeeeccC
Q 024030 257 FSGLSEGGMQASFLVYI 273 (273)
Q Consensus 257 ~~~~~~~~~~~~~~~yl 273 (273)
+....++++.+|+|.|+
T Consensus 203 ~~~~~~~~~~~wlp~~L 219 (368)
T TIGR00903 203 FGVALFDNLAIWLEAAL 219 (368)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999885
No 3
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.92 E-value=8.9e-24 Score=181.50 Aligned_cols=253 Identities=11% Similarity=0.059 Sum_probs=178.7
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHH
Q 024030 7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL 86 (273)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~ 86 (273)
++.+...++..++............|.+.+ +++.+..+.|++.+.+.++..+++++.|+++||+|||+++..
T Consensus 7 ~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~--------~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~ 78 (412)
T TIGR02332 7 RRLIIFLFILFIFSFLDRINIGFAGLTMGK--------DLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAG 78 (412)
T ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHhhHh--------hcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHH
Confidence 444555566666667777777777775433 447777889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024030 87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF 166 (273)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~ 166 (273)
+.++..++..+..+.++ ++.+++.|++.|+ +.+...+...+++.|++|+++|++++++.+....+|..++|.+++.
T Consensus 79 ~~~~~~~~~~~~~~~~~---~~~l~~~r~l~G~-~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~ 154 (412)
T TIGR02332 79 IMVLWGIASTATMFATG---PESLYLLRILVGI-AEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGY 154 (412)
T ss_pred HHHHHHHHHHHHHHhcC---HHHHHHHHHHHHH-HHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888 8899999999998 5566668888899999999999999999999999999999988775
Q ss_pred h----------hhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchHH
Q 024030 167 L----------STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIR 236 (273)
Q Consensus 167 l----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (273)
+ +||+.|.+.++..++..++.++++||++++.+.-++.++.....+...+..+.+++.+.. .+.....+
T Consensus 155 l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 233 (412)
T TIGR02332 155 ILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMIDNDQLTLEQPEGAF-AHAAMPQR 233 (412)
T ss_pred HHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHHHHHHHHHHHHhcccccccccccc-ccccccHH
Confidence 4 799999998888776666656777887643221000000000000000000000000000 00001112
Q ss_pred HHHHHHhhcchhHHHHHHHHHhccccccceeeeeccC
Q 024030 237 DLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLVYI 273 (273)
Q Consensus 237 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 273 (273)
+.++.++ +|.++...+.+++....+.++.+++|.|+
T Consensus 234 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~l 269 (412)
T TIGR02332 234 SMLREIF-TPAIMLYTLAYFCLTNTLSAINIWTPQIL 269 (412)
T ss_pred HHHHHhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233344 57888888888888888888888888774
No 4
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.91 E-value=2e-22 Score=172.53 Aligned_cols=172 Identities=19% Similarity=0.208 Sum_probs=147.7
Q ss_pred HHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHH
Q 024030 11 SHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTL 90 (273)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~ 90 (273)
..++...++...+.+...|++|.++++ +.+.+..+.|++.+...+...+.+++.|+++||+|||+++..+...
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~ 85 (400)
T PRK11646 13 YFLLIDNMLVVLGFFVVFPLISIRFVD-------QLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLM 85 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHH
Confidence 556678888888999999999999854 3367788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh---
Q 024030 91 SIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL--- 167 (273)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l--- 167 (273)
..++...+...++ .+.+++.|++.|+ +.+...+...+++.|.+|+++|++++|+.+...++|..+||.+++.+
T Consensus 86 ~~~~~~~~~~~~~---~~~l~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~ 161 (400)
T PRK11646 86 RAAGFATMAIAHE---PWLLWLSCILSGL-GGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQY 161 (400)
T ss_pred HHHHHHHHHHhcc---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999888888777 8888999999998 55666688899999999999999999999999999999999999887
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcC
Q 024030 168 STTSAFQAATIVSMLAAAYMRVFLKD 193 (273)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (273)
+|++.|++.++..++..++..+..||
T Consensus 162 g~~~~f~~~~~~~~~~~i~~~~~~~~ 187 (400)
T PRK11646 162 DFRLVCATGAVLFVLAAAFNAWLLPA 187 (400)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 88999988877766655444444554
No 5
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.91 E-value=1.3e-22 Score=171.06 Aligned_cols=224 Identities=16% Similarity=0.152 Sum_probs=168.5
Q ss_pred HHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHH
Q 024030 13 LFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSI 92 (273)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~ 92 (273)
++...++..++.....+.+|.|..+. +.+..+.|++.+.+.++..+++++.|+++||+|||+++..+.++..
T Consensus 4 l~~~~~~~~~~~~~~~~~~~~~~~~~--------~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~ 75 (365)
T TIGR00900 4 LFAAQLISLIGTAITQVALPLYVLAG--------TGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRA 75 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh--------hccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHH
Confidence 45677778888888889999997664 5667788999999999999999999999999999999999988877
Q ss_pred HHHHHHHhcc-----CchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024030 93 IPLAILAYRR-----SISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL 167 (273)
Q Consensus 93 ~~~~~~~~~~-----~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l 167 (273)
++..+..+.+ + ++.+++.|++.|+ +.+...+...+++.|++|+++|++++++.+....+|..+||.+++.+
T Consensus 76 ~~~~~~~~~~~~~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l 151 (365)
T TIGR00900 76 VLVAVLPFVALLGGLN---IWQVYVLAGILAI-AQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLM 151 (365)
T ss_pred HHHHHHHHHHHcCCCc---HHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 7777666655 5 8889999999998 66777789999999999999999999999999999999999988776
Q ss_pred ----hhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchHHHHHHHHh
Q 024030 168 ----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLR 243 (273)
Q Consensus 168 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 243 (273)
+|++.|++.++..++..+. .+..+++++++++++ +..++..++.++..+.++
T Consensus 152 ~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~ 207 (365)
T TIGR00900 152 YATLGIKWAIWVDAVGFAISALL-IVSVRIPELAASEIQ-----------------------ALSNAVLRDTREGIKFVL 207 (365)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHH-HHhcccccCCCcccc-----------------------ccchhHHHHHHhHHHHHH
Confidence 7899888876655554443 222322111111100 000011112334455577
Q ss_pred hcchhHHHHHHHHHhccccccce-eeeecc
Q 024030 244 SSVTLSQAAVVAFFSGLSEGGMQ-ASFLVY 272 (273)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~y 272 (273)
|+|.++...+..++......... .+.|.|
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (365)
T TIGR00900 208 KNPLLRTLLLLALLFNLVFAPAIVALFPYV 237 (365)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 89999988888887777766555 555554
No 6
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.91 E-value=1.5e-23 Score=172.08 Aligned_cols=244 Identities=15% Similarity=0.143 Sum_probs=190.4
Q ss_pred hhhHHHHHHHHHHHHHHHh----HHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchh
Q 024030 8 KTLSHLFVTVFLWGFATMM----VVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAM 83 (273)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~ 83 (273)
|.-+-+++..++...+++. .....|...+|. +.+..+.|++.+.+.+.+.++..+.|.++||.+.|+.
T Consensus 25 ~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~--------~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~f 96 (448)
T COG2271 25 RWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDG--------GLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYF 96 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhc--------CCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcee
Confidence 3333445555555555444 445666665442 5778899999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 024030 84 LTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLA 163 (273)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~ 163 (273)
+.+++++.++..++++++++ .+.+.+..++.|. .+|.-.|++...+++++|+++||+..++.+++.++|+.+.|++
T Consensus 97 m~~gLilsai~nil~Gfs~s---~~~~~~l~~lng~-fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~ 172 (448)
T COG2271 97 MAFGLILSAIVNILFGFSPS---LFLFAVLWVLNGW-FQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLV 172 (448)
T ss_pred ehHHHHHHHHHHHHHhhhhH---HHHHHHHHHHHHH-HhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHH
Confidence 99999999999999999998 9999999999998 7788889999999999999999999999999999999998887
Q ss_pred H--HHh----hhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccc-cchHH
Q 024030 164 A--RFL----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKK-IPSIR 236 (273)
Q Consensus 164 ~--~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 236 (273)
. +.+ +||..|++.+++.++..++.++..+++|++..-++-.+..++ +.+.. .+++++. ...++
T Consensus 173 ~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~d----~~e~~------~~~~~~~~ls~~~ 242 (448)
T COG2271 173 ALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGD----PLEIY------EEEKENEGLTAWQ 242 (448)
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhcC----chhhh------hhhccCCCccHHH
Confidence 7 555 799999999999988888878888887766554211111111 00000 0111111 22334
Q ss_pred HHHHHHhhcchhHHHHHHHHHhccccccceeeeeccC
Q 024030 237 DLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLVYI 273 (273)
Q Consensus 237 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 273 (273)
...+.+++||.+|.+++++++...+.++++.|-|.||
T Consensus 243 i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL 279 (448)
T COG2271 243 IFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYL 279 (448)
T ss_pred HHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 4556689999999999999999999999999999985
No 7
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.91 E-value=1.8e-22 Score=174.63 Aligned_cols=238 Identities=12% Similarity=0.059 Sum_probs=170.1
Q ss_pred HHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHH
Q 024030 13 LFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSI 92 (273)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~ 92 (273)
.++..+...+......+.+|.+.++ ++.+..+.|++.+.+.++..+++++.|+++||+|||+++.++.++..
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~ 99 (434)
T PRK11663 28 MYLGYALFYFTRKSFNAAMPEMLAD--------LGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATG 99 (434)
T ss_pred HHHHHHHHHHhhhhHHHhhHHHHHh--------cCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHH
Confidence 3444444455555667788888654 36677788999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh----h
Q 024030 93 IPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----S 168 (273)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l----~ 168 (273)
++..++.+.++ ++.+++.|++.|+ +.+...+...+++.|++|+++|++++++.+...++|..++|.+++.+ +
T Consensus 100 ~~~~~~~~~~~---~~~l~~~~~l~g~-~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~g 175 (434)
T PRK11663 100 IINILFGFSSS---LWAFALLWVLNAF-FQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYG 175 (434)
T ss_pred HHHHHHHHHhH---HHHHHHHHHHHHH-HHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 99888888877 8888899999997 55555688899999999999999999999999999999999888766 8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchHHHHH-HHHhhcch
Q 024030 169 TTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLI-CLLRSSVT 247 (273)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~ 247 (273)
||+.|.+.+++.++..++..+.+||+++....++..++.. +. ++...+++ +...+.++.+ +..+++|.
T Consensus 176 w~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~--------~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 244 (434)
T PRK11663 176 WRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRH--------DA-LELAQQQE--GAGLSRKEILTKYVLLNPY 244 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccc--------cc-cccchhcc--ccCCChhhhHHHHHhcChH
Confidence 9999998877766555554556676543221110000000 00 00000000 0001222222 23567888
Q ss_pred hHHHHHHHHHhccccccceeeeeccC
Q 024030 248 LSQAAVVAFFSGLSEGGMQASFLVYI 273 (273)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~yl 273 (273)
++...+..++....+.++.+++|.|+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~p~~l 270 (434)
T PRK11663 245 IWLLSFSYVLVYVVRAAINDWGNLYM 270 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888877777777777777777663
No 8
>PRK03545 putative arabinose transporter; Provisional
Probab=99.91 E-value=2e-22 Score=172.06 Aligned_cols=171 Identities=15% Similarity=0.138 Sum_probs=140.3
Q ss_pred HHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHH
Q 024030 12 HLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLS 91 (273)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~ 91 (273)
.+.+..+......+...+.+|.+.+| ++.+..+.|++.+.+.++..+++++.|.++||+|||+++..+....
T Consensus 13 ~l~~~~~~~~~~~~~~~~~~~~l~~~--------~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 84 (390)
T PRK03545 13 TLALAAFIFNTTEFVPVGLLSDIAQS--------FHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLF 84 (390)
T ss_pred HHHHHHHHHHhHHHHHHcchHHHHhH--------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 33344444334444555667877554 3677788899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh----
Q 024030 92 IIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL---- 167 (273)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l---- 167 (273)
.++...+.+.++ ++.+++.|++.|+ +.+...+...+++.|++|+++|++++|+.....++|..+||.+++.+
T Consensus 85 ~~~~~~~~~~~~---~~~l~~~r~~~G~-~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~ 160 (390)
T PRK03545 85 IASHVLSALAWN---FTVLLISRIGIAF-AHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYL 160 (390)
T ss_pred HHHHHHHHHhcc---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 999998888888 9999999999998 55666688899999999999999999999999999999999888765
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 024030 168 STTSAFQAATIVSMLAAAYMRVFLKDD 194 (273)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (273)
+||+.|++.+++.++..+......||+
T Consensus 161 gw~~~f~~~~~~~~l~~~~~~~~~~~~ 187 (390)
T PRK03545 161 GWRTTFLAIGGGALITLLLLIKLLPLL 187 (390)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 899999998887766655545555543
No 9
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=99.91 E-value=3.3e-22 Score=171.79 Aligned_cols=216 Identities=14% Similarity=0.131 Sum_probs=166.6
Q ss_pred HHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHH
Q 024030 17 VFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLA 96 (273)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~ 96 (273)
.++..+......|.+|...++. +.+....++..+++.++..+++++.|+++||+|||++++.+..+..++..
T Consensus 25 ~~~~~~~~~~~~p~l~~i~~~~--------~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~ 96 (413)
T PRK15403 25 DFAAYLTTDLIQPGIINVVRDF--------NADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACA 96 (413)
T ss_pred HHHHHHHHHhhccCHHHHHHHh--------CCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHH
Confidence 3344456677778888765443 55666778888999999999999999999999999999999999999988
Q ss_pred HHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHH
Q 024030 97 ILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----STTSA 172 (273)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l----~~~~~ 172 (273)
++...++ ++.+++.|+++|+ +.+...+...+++.|.+|+++|++++++......+|..+||.+++.+ +||+.
T Consensus 97 ~~~~a~~---~~~l~~~r~l~Gi-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~ 172 (413)
T PRK15403 97 ATLFTTS---MTQFLIARFIQGT-SICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVL 172 (413)
T ss_pred HHHHcCC---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 8888888 8899999999998 44555567778899999999999999999999999999999988866 89999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchHHHHHHHHhhcchhHHHH
Q 024030 173 FQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAA 252 (273)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 252 (273)
|++.++..++..+...+.+||++++++++ ... ....+.++.++|||.++...
T Consensus 173 f~~~~~~~~i~~~~~~~~lp~~~~~~~~~-------------------------~~~---~~~~~~~~~ll~~~~~~~~~ 224 (413)
T PRK15403 173 FAIIAVMGLIAFVGLLLAMPETVKRGAVP-------------------------FSA---KSVLRDFRNVFRNRLFLTGA 224 (413)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCccccCCC-------------------------CCh---HHHHHHHHHHHcCHHHHHHH
Confidence 99988877776665556677754321110 000 01122334467899999888
Q ss_pred HHHHHhccccccceeeeecc
Q 024030 253 VVAFFSGLSEGGMQASFLVY 272 (273)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~y 272 (273)
+..++......+...+.|.|
T Consensus 225 l~~~~~~~~~~~~~~~~P~~ 244 (413)
T PRK15403 225 ATLSLSYIPMMSWVAVSPVI 244 (413)
T ss_pred HHHHHHHHHHHHHHHhChHH
Confidence 88777777766666666654
No 10
>PRK10054 putative transporter; Provisional
Probab=99.91 E-value=2e-22 Score=172.19 Aligned_cols=178 Identities=18% Similarity=0.248 Sum_probs=149.3
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHH
Q 024030 7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL 86 (273)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~ 86 (273)
+|.++.+....++...+.+...|++|.|+++ +++.+..+.|++.+.+.++..+++++.|+++||+|||+++..
T Consensus 6 ~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~-------~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~ 78 (395)
T PRK10054 6 RRSTSALLASSLLLTIGRGATLPFMTIYLSR-------QYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLL 78 (395)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHH
Confidence 5567777788888899999999999999865 336777888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024030 87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF 166 (273)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~ 166 (273)
+.+...++...+.+.++ ++.+++.+.+.|. ..+...+...++..|..|+++|+++.++.+...++|..+||.+++.
T Consensus 79 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~ 154 (395)
T PRK10054 79 AITAFASGFIAIPLVNN---VTLVVLFFALINC-AYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTL 154 (395)
T ss_pred HHHHHHHHHHHHHHHhH---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888888888888777 7777778877775 4455567889999999999999999999999999999999999988
Q ss_pred h---hhHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 024030 167 L---STTSAFQAATIVSMLAAAYMRVFLKDDV 195 (273)
Q Consensus 167 l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (273)
+ +|+.+|.+.++..++..+...+.+||++
T Consensus 155 l~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~~ 186 (395)
T PRK10054 155 LVMQSINLPFWLAAICSAFPLVFIQIWVQRSE 186 (395)
T ss_pred HHHhccCcHHHHHHHHHHHHHHHHHHHHhccc
Confidence 7 7899999887777666555455566543
No 11
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.90 E-value=5.5e-22 Score=168.77 Aligned_cols=225 Identities=19% Similarity=0.159 Sum_probs=170.2
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHH
Q 024030 7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL 86 (273)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~ 86 (273)
++.........+....+..+..|.+|.+.++. +.+..+.|++.+.+.++..+++++.|+++||+|||+.+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~--------g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 75 (385)
T TIGR00710 4 KAFALLLGCLSILGPLGIDMYLPAFPEIAADL--------STPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLL 75 (385)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcccHHHHHHHh--------CCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHH
Confidence 44444444445556677788888999886553 6667788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024030 87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF 166 (273)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~ 166 (273)
+.++..++.......++ ++.+++.|++.|+ +.+...+...+++.|.+|+++|++++++.+....+|..++|.+++.
T Consensus 76 ~~~~~~~~~~~~~~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 151 (385)
T TIGR00710 76 GLFIFALSSLGLALSNN---IETLLVLRFVQAF-GASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGY 151 (385)
T ss_pred HHHHHHHHHHHHHHHcc---HHHHHHHHHHHHc-chhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888888877 8889999999998 6666668999999999999999999999999999999999998887
Q ss_pred h----hhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchHHHHHHHH
Q 024030 167 L----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLL 242 (273)
Q Consensus 167 l----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 242 (273)
+ +|+..+.+.++..++..+...+..||++++++++ + .+...+..+..
T Consensus 152 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~----~~~~~~~~~~~ 202 (385)
T TIGR00710 152 ILVWLSWHAIFAFLSLAGILLSALIFFILPETLPYEARI-------------------------Q----ISTYFETFLLL 202 (385)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccC-------------------------C----HHHHHHHHHHH
Confidence 6 7899998887777666665555566543221110 0 00112223346
Q ss_pred hhcchhHHHHHHHHHhccccccceeeeecc
Q 024030 243 RSSVTLSQAAVVAFFSGLSEGGMQASFLVY 272 (273)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 272 (273)
+|+|+++...+...+..........+.|.|
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (385)
T TIGR00710 203 LKSKMFWGYALIYGASFGGFFAFFSGAPFV 232 (385)
T ss_pred HcCchhHHHHHHHHHHHHHHHHHHHcChHH
Confidence 778888877776666555555555554443
No 12
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.90 E-value=1.3e-21 Score=167.17 Aligned_cols=161 Identities=14% Similarity=0.211 Sum_probs=134.7
Q ss_pred HHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHh
Q 024030 21 GFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAY 100 (273)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~ 100 (273)
....+...+.+|.+.++ ++.+..+.|+..+.+.++..+++++.|+++||+|||+++..+.++..++..++.+
T Consensus 33 ~~~~~~~~~~l~~~~~~--------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~ 104 (394)
T PRK10213 33 IIVEFLPVSLLTPMAQD--------LGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSF 104 (394)
T ss_pred HHHHHHHHhhHHHHHHH--------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHH
Confidence 33344555677777544 3677788899999999999999999999999999999999999999998888888
Q ss_pred ccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHH
Q 024030 101 RRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----STTSAFQAA 176 (273)
Q Consensus 101 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l----~~~~~~~~~ 176 (273)
.++ ++.+++.|++.|+ +.+...+...+++.|++|+++|++++++.....++|..+||.+++.+ +||+.|++.
T Consensus 105 ~~~---~~~l~~~r~l~G~-~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~ 180 (394)
T PRK10213 105 ANS---FSLLLIGRACLGL-ALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAA 180 (394)
T ss_pred HCh---HHHHHHHHHHHHH-hhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHH
Confidence 877 9999999999998 65666789999999999999999999999999999999999998876 899999988
Q ss_pred HHHHHHHHHHHHHHhcC
Q 024030 177 TIVSMLAAAYMRVFLKD 193 (273)
Q Consensus 177 ~~~~~~~~~~~~~~~~~ 193 (273)
+++.++..+......||
T Consensus 181 ~~l~~~~~l~~~~~~p~ 197 (394)
T PRK10213 181 AVMGVLCIFWIIKSLPS 197 (394)
T ss_pred HHHHHHHHHHHHHHCCC
Confidence 76665544443334555
No 13
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.90 E-value=1.2e-21 Score=172.14 Aligned_cols=177 Identities=20% Similarity=0.154 Sum_probs=151.5
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHH
Q 024030 7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL 86 (273)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~ 86 (273)
+..+..+.+..++..+...++...+|.+.+|. +.+....+++.+.+.++...+.+++|+++||+|||++++.
T Consensus 5 ~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l--------~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~ 76 (495)
T PRK14995 5 WLTLVIIVLVYIPVAIDATVLHVAAPTLSMTL--------GASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLML 76 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 44566677888888888999999999997654 5566678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcC-ChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024030 87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNI-SERQRASAFGILLGVLSASFVCGTLAAR 165 (273)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~gp~~~~ 165 (273)
+..+..++.+.++++++ .+.+++.|+++|+ +.+...+.....+.+.+ |+++|++++|+......+|..+||.+++
T Consensus 77 ~~~~~~~~~~~~~~a~~---~~~li~~r~l~G~-g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg 152 (495)
T PRK14995 77 GGTLFGLASLAAAFSPT---ASWLIATRALLAI-GAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGG 152 (495)
T ss_pred HHHHHHHHHHHHHHcCC---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988 8999999999998 55556577777776665 7899999999999999999999999998
Q ss_pred Hh----hhHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 024030 166 FL----STTSAFQAATIVSMLAAAYMRVFLKDDV 195 (273)
Q Consensus 166 ~l----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (273)
.+ +||+.|++...+.++..++..+.+|+++
T Consensus 153 ~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~ 186 (495)
T PRK14995 153 ILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQA 186 (495)
T ss_pred HhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 88 8999999988777777666667777654
No 14
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.90 E-value=1e-22 Score=170.96 Aligned_cols=227 Identities=26% Similarity=0.351 Sum_probs=163.1
Q ss_pred HHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHH
Q 024030 14 FVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSII 93 (273)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~ 93 (273)
++..++..++.....+.+|.++.+ +++.+..+.|++.+.+.++..+++++.|+++||+|||+++..+.++.++
T Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~ 74 (352)
T PF07690_consen 2 FLAFFLSGFGFSIISPALPLYLAE-------ELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFAL 74 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHC-------CSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH-------ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhh
Confidence 456667777888888899854433 2355666789999999999999999999999999999999999999888
Q ss_pred HHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh----hh
Q 024030 94 PLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----ST 169 (273)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l----~~ 169 (273)
+..+..++++ .+.+++.|++.|+ +.+...+...+++.|++|+++|++++++.+...++|..++|.+++.+ +|
T Consensus 75 ~~~~~~~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~ 150 (352)
T PF07690_consen 75 GSLLLAFASN---FWLLLIARFLLGI-GSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGW 150 (352)
T ss_dssp HHHHHHHHCC---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHH
T ss_pred HHHHhhhhhh---HHHHhhhcccccc-ccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcccc
Confidence 8555555555 6789999999998 66777799999999999999999999999999999999999999887 79
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchHHHHHHHHhhcchhH
Q 024030 170 TSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLS 249 (273)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 249 (273)
++.|++.+++.++..++...+.++++++++++++. +++ .+..++..+.++.++++|.++
T Consensus 151 ~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~----------------~~~-----~~~~~~~~~~~~~~~~~~~~~ 209 (352)
T PF07690_consen 151 RWAFLISAILSLIAAILFILFLPEPPPPRERESPK----------------ESE-----SKKPKPLKPGFKSLFKNPVLW 209 (352)
T ss_dssp CCHHHHHHHHHHHHHHHHHCCC---STTTT--SST----------------TTT-------HHHCCCH-CTHHHHHHCCH
T ss_pred ccccccccchhhhhhhhHhhhhhhccccccccccc----------------ccc-----cccccccccccccccccchhh
Confidence 99999998888877665445555544433332100 000 000001111223355667776
Q ss_pred HHHHHHHHhccccccceeeeecc
Q 024030 250 QAAVVAFFSGLSEGGMQASFLVY 272 (273)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~y 272 (273)
...+..++..+.......++|.|
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~ 232 (352)
T PF07690_consen 210 ILLIAFFLFFFVFSGFSFFLPLY 232 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHhhcccchh
Confidence 55566666655666666666665
No 15
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.89 E-value=3.4e-21 Score=164.67 Aligned_cols=182 Identities=17% Similarity=0.147 Sum_probs=147.5
Q ss_pred CCchhhhhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCC
Q 024030 1 MGMEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGR 80 (273)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~gr 80 (273)
|+.++.+|.+........+.........|.+|.+.++. +.+..+.|++.+.+.++..+++++.|+++||+||
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~--------~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~gr 72 (394)
T PRK11652 1 MKRQRNVNLLFMLVLLVAVGQMAQTIYVPAIADMARDL--------NVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGR 72 (394)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHh--------CCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCC
Confidence 44445455555555566666667777788888886553 6677788999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHH
Q 024030 81 KAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCG 160 (273)
Q Consensus 81 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g 160 (273)
|+.+..+.....++...+.+.++ ++.+++.|++.|+ +.+...+....+..|..++++|+++++..+.+..++..++
T Consensus 73 r~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 148 (394)
T PRK11652 73 RPVILVGMSIFILGTLVALFAHS---LTVLIAASAIQGL-GTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLA 148 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHh-hhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888888888777 8889999999998 5555557778888999999999999999999999999999
Q ss_pred HHHHHHh----hhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 024030 161 TLAARFL----STTSAFQAATIVSMLAAAYMRVFLKDD 194 (273)
Q Consensus 161 p~~~~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (273)
|.+++.+ +|++.|++.++..++..++..+..||+
T Consensus 149 ~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~ 186 (394)
T PRK11652 149 PLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPET 186 (394)
T ss_pred HHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 9888776 799999988777665555545556664
No 16
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.89 E-value=5.3e-22 Score=168.88 Aligned_cols=232 Identities=17% Similarity=0.118 Sum_probs=167.2
Q ss_pred HHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHH
Q 024030 20 WGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILA 99 (273)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~ 99 (273)
............|.+.++ ++.+..+.|++.+++.++..++.++.|+++||+|||+++..+.++..++..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~--------~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~ 77 (399)
T TIGR00893 6 NYLDRANLSFAAPMLQED--------LGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQA 77 (399)
T ss_pred HHHHHHhhhHhHHHHHHh--------hCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHH
Confidence 344445555666665433 356677889999999999999999999999999999999999999999888888
Q ss_pred hccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHH
Q 024030 100 YRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----STTSAFQA 175 (273)
Q Consensus 100 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l----~~~~~~~~ 175 (273)
+.++ ++.+++.|++.|+ +.+...+...+++.|++|+++|++++++.+...++|..++|.+++.+ +|++.|.+
T Consensus 78 ~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 153 (399)
T TIGR00893 78 FAGA---YVSLYILRVLLGA-AEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFII 153 (399)
T ss_pred HHcC---HHHHHHHHHHHHH-HHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHH
Confidence 8887 8999999999998 56667789999999999999999999999999999999999988865 89999998
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchHHHHHHHHhhcchhHHHHHHH
Q 024030 176 ATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVA 255 (273)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 255 (273)
.++..++..++..+..||++++++..++.++...... .. .+. +.+++..+. ++..+..+++|+++...+..
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~--~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 224 (399)
T TIGR00893 154 EGVLGIIWGVLWLKFIPDPPQKAKWLTEEEKYIVVGG--LL-AEQ--QGKGPSTPK----KYQIKELLKDRRVWGLALGQ 224 (399)
T ss_pred HHHHHHHHHHHhhheecCCCCccccCCHHHHhhcchh--hc-ccc--ccccccCCC----ccchHHHhcCHHHHHHHHHH
Confidence 8877776666545556665432221110000000000 00 000 000010111 11123366788999888888
Q ss_pred HHhccccccceeeeecc
Q 024030 256 FFSGLSEGGMQASFLVY 272 (273)
Q Consensus 256 ~~~~~~~~~~~~~~~~y 272 (273)
++..........++|.|
T Consensus 225 ~~~~~~~~~~~~~~~~~ 241 (399)
T TIGR00893 225 FLVNIGLGFFLTWFPTY 241 (399)
T ss_pred HHHHhHHHHHHHHHHHH
Confidence 88888888777777765
No 17
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=99.89 E-value=1.4e-23 Score=173.86 Aligned_cols=233 Identities=14% Similarity=0.210 Sum_probs=178.4
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHH
Q 024030 8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP 87 (273)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~ 87 (273)
+.+..+++..+++....+.+...++.. ++.++.+....|++.+.+.+...+.+|+.|+++||++||+++..|
T Consensus 33 ~~l~il~~vnlmny~Dr~~iagv~~~v--------~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG 104 (493)
T KOG1330|consen 33 LTLVILCLVNLMNYADRYTIAGVLKEV--------QTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVG 104 (493)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhHHH--------HHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeH
Confidence 344555666666666666555544443 445577778889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024030 88 LTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL 167 (273)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l 167 (273)
..++.++.+..+++.. +|.+.+.|.+.|+ +.+.+.+..+++++|.+|.++|++.+++++.+..+|..+|.+.++.+
T Consensus 105 ~~iW~~Av~~~~fs~~---Fwq~~l~R~~vGi-GeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~v 180 (493)
T KOG1330|consen 105 IFIWTLAVFASGFSNH---FWQVLLCRGFVGI-GEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVV 180 (493)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHhcc-chhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeee
Confidence 9999999999999977 9999999999998 77888899999999999999999999999999999998887776655
Q ss_pred -----hhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchHHHHHHHH
Q 024030 168 -----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLL 242 (273)
Q Consensus 168 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 242 (273)
.||+.|...+++.++..++..++.+|+++...++. +.. ....+...+..+-++.+
T Consensus 181 a~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~-------------------~~~-~~~~~~~ts~~kDl~~l 240 (493)
T KOG1330|consen 181 ASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERGARDEV-------------------DGE-NKMVKPFTSVWKDLKVL 240 (493)
T ss_pred ccCccceEEEEEeehHHHHHHHHHHHhhccCccccccccc-------------------ccC-CcCCCCccchHHHHHHH
Confidence 49999999999999988887888887765433210 000 00011122333334446
Q ss_pred hhcchhHHHHHHHHHhccccccceeeeecc
Q 024030 243 RSSVTLSQAAVVAFFSGLSEGGMQASFLVY 272 (273)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 272 (273)
.|+|.+....+......+...++..|-|.+
T Consensus 241 ~~~~v~v~~sl~~~a~~fv~Gs~sww~p~~ 270 (493)
T KOG1330|consen 241 AKIKVFVLSSLGIIAAQFVIGSLSWWAPAF 270 (493)
T ss_pred HccCceeeehHHHHHHHHhccccchhhhhH
Confidence 666777777777777777776666655543
No 18
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.89 E-value=2.8e-21 Score=165.06 Aligned_cols=172 Identities=13% Similarity=0.209 Sum_probs=132.2
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHH
Q 024030 8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP 87 (273)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~ 87 (273)
|+++.++...++..++..+.....+...++. +.+....+++.+.+.++..+..|+.|+++||+|||++++.+
T Consensus 3 ~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~ 74 (393)
T PRK11195 3 KGFYAIMAAQFFSALADNALLFAAIALLKEL--------HYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIA 74 (393)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--------CCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHH
Confidence 3556677788888877766666666665543 34456779999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024030 88 LTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL 167 (273)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l 167 (273)
.++..++.+.+....+ . ++.|+++|+ +.+...|...+++.|++|+++|++++|+.+...++|..+||.++|.+
T Consensus 75 ~~~~~~~~~~~~~~~~---~---~~~r~l~G~-~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l 147 (393)
T PRK11195 75 NGIKLLGCLLMLFGIH---P---LLAYGLVGI-GAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGAL 147 (393)
T ss_pred HHHHHHHHHHHHHHHH---H---HHHHHHHHH-HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988887776665444 2 678899998 66777799999999999999999999999999999999999999988
Q ss_pred -h--hHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 024030 168 -S--TTSAFQAATIVSMLAAAYMRVFLKDDV 195 (273)
Q Consensus 168 -~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (273)
. |+.++.+.+...++. .+..+.+||++
T Consensus 148 ~~~~~~~~~~i~~~~~~~~-~~~~~~l~~~~ 177 (393)
T PRK11195 148 ADPHAEAALAVCALIYLLA-ALFNLFIPRLG 177 (393)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHhcCCCCc
Confidence 3 333443333332222 22245566643
No 19
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.89 E-value=3.5e-21 Score=163.97 Aligned_cols=175 Identities=18% Similarity=0.257 Sum_probs=149.1
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHH
Q 024030 8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP 87 (273)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~ 87 (273)
+.++......+..........+.+|.+.+|. +.+..+.|++.+.+.++..+++++.|+++||+|||+++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~ 74 (382)
T PRK10091 3 KVILSLALGTFGLGMAEFGIMGVLTELAHDV--------GISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFL 74 (382)
T ss_pred chHHHHHHHHHHHHhhHHHHHhChHHHHHHc--------CCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHH
Confidence 4556667777777888888889999986553 66667789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024030 88 LTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL 167 (273)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l 167 (273)
..+.+++.+++.+.++ ++.+++.|++.|+ +.+...+...+.+.|+.|+++|+++++....+..+|..++|.+++.+
T Consensus 75 ~~~~~~~~~l~~~~~~---~~~l~~~r~l~G~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l 150 (382)
T PRK10091 75 VALCVIGNAMFTLSSS---YLMLAIGRLVSGF-PHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYL 150 (382)
T ss_pred HHHHHHHHHHHHHhCc---HHHHHHHHHHHHh-hhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHH
Confidence 9999999999989888 8999999999998 55666577888899999999999999999999999999998888766
Q ss_pred ----hhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 024030 168 ----STTSAFQAATIVSMLAAAYMRVFLKDD 194 (273)
Q Consensus 168 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (273)
+||+.|.+.+++.++..+...+..||.
T Consensus 151 ~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~ 181 (382)
T PRK10091 151 SQEFSWRYTFLLIAVFNIAVLASIYFWVPDI 181 (382)
T ss_pred hhhccHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 899999998887766665545566664
No 20
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.89 E-value=3.3e-22 Score=169.42 Aligned_cols=233 Identities=12% Similarity=0.054 Sum_probs=166.8
Q ss_pred HHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHH
Q 024030 18 FLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAI 97 (273)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~ 97 (273)
+..........+..|.+.++ ++.+..+.|++.+...++..++.++.|+++||+|||+.+..+.++..++.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~--------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~ 76 (379)
T TIGR00881 5 AAYYLVRKNFALAMPYLVEE--------IGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLF 76 (379)
T ss_pred hHHHHhHHhhhhhhHHHHHH--------hCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHH
Confidence 34445555666677766443 3566678899999999999999999999999999999999999999999888
Q ss_pred HHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHH-HHHHHh----hhHHH
Q 024030 98 LAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGT-LAARFL----STTSA 172 (273)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp-~~~~~l----~~~~~ 172 (273)
+.+.++ ++.+++.|++.|+ +.+...+...+++.|++|+++|++++++.+....+|..++| .+++.+ +|++.
T Consensus 77 ~~~~~~---~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 152 (379)
T TIGR00881 77 FGFSTS---LWVMAALWALNGI-FQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWV 152 (379)
T ss_pred HHHhhh---HHHHHHHHHHHHh-hccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhH
Confidence 888887 8999999999998 55666688999999999999999999999999999999998 455443 78999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchHHHHHHHHhhcchhHHHH
Q 024030 173 FQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAA 252 (273)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 252 (273)
|.+.+++.++..++..+..||++++++.++..+...+ +.+++++. ++ +..+..+...+.+.++|.++...
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~ 222 (379)
T TIGR00881 153 FIVPGIIAIIVSLICFLLLRDSPQSCGLPPAEEMPNE-------EPDGDAEK-KE--EELTKKQIFLQYVLLNKVLWYIS 222 (379)
T ss_pred HHHHHHHHHHHHHHHheeeCCCccccccCccccCccc-------cccccccc-cc--ccccchHHHHHHHHhcchHHHHH
Confidence 9888777766655555566665443222111000000 00000000 00 11112223344567889999888
Q ss_pred HHHHHhccccccceeeeecc
Q 024030 253 VVAFFSGLSEGGMQASFLVY 272 (273)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~y 272 (273)
+..++......+...+.|.|
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~ 242 (379)
T TIGR00881 223 LGYVFVYVVRTGILDWSPLY 242 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88888877777777666665
No 21
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.88 E-value=7.7e-21 Score=162.92 Aligned_cols=229 Identities=11% Similarity=0.091 Sum_probs=164.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhH
Q 024030 6 EIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLT 85 (273)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~ 85 (273)
++|.+....+..++...+.+...+++|.+.+|. +.+..+.|++.+.+.++..+++++.|+++||+|||+++.
T Consensus 11 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--------g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~ 82 (402)
T TIGR00897 11 IPLNLLWGYIGVVVFMTGDGLEQGWLSPFLKAL--------GLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMM 82 (402)
T ss_pred CCchhhHHHHHHHHHHHhhhhHHHhHHHHHHHh--------CCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence 467778888888888888888888898887653 566778899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH---hc-cCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHH-HHH
Q 024030 86 LPLTLSIIPLAILA---YR-RSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASF-VCG 160 (273)
Q Consensus 86 ~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~-~~g 160 (273)
.+..+..++..++. .. ++ ++.+++.|++.|+ +.+...+...+.+.+..|+++|++++|+.+...++|. .++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~i~G~-g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g 158 (402)
T TIGR00897 83 IGLLLWCVGHAAFIVFGLGHAN---YPLILLFYGIRGL-GYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFG 158 (402)
T ss_pred HHHHHHHHHHHHHHHHhccCcc---HHHHHHHHHHHHc-chHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888887765543 21 23 6778889999998 4455556777888999999999999999999999996 578
Q ss_pred HHHHHHh----hhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchHH
Q 024030 161 TLAARFL----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIR 236 (273)
Q Consensus 161 p~~~~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (273)
|.+++.+ +|+..++.......+..++..+..++.+++++++ + +++ ..+.+
T Consensus 159 ~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~-----~~~---~~~~~ 212 (402)
T TIGR00897 159 SYYSSYAIPAFGEMNTLWSALAFVLTGGVIALFSNKDIFTPQHMQ------------------T-----REK---FSELG 212 (402)
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHHHHHHHhccCCCCCccccc------------------C-----Ccc---hhhHH
Confidence 8888765 5554444433333333333233334322111110 0 000 01222
Q ss_pred HHHHHHhhcchhHHHHHHHHHhccccccceeeeecc
Q 024030 237 DLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLVY 272 (273)
Q Consensus 237 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 272 (273)
+..+.++|+|.++...+..++.....++..++.|.|
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 248 (402)
T TIGR00897 213 KAATILFTNPNVLLGGMVRIINTIGLFGFAVFLPMF 248 (402)
T ss_pred HHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233457789999988888888877777777777766
No 22
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.88 E-value=8e-21 Score=163.05 Aligned_cols=213 Identities=14% Similarity=0.094 Sum_probs=159.4
Q ss_pred HHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHH
Q 024030 19 LWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAIL 98 (273)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~ 98 (273)
...++..+..|.+|.+.++. +.+..+.++..+.+.++..+++++.|+++||+|||+++..+.....++....
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~--------~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~ 95 (406)
T PRK15402 24 ATYIANDMIQPGMLAVVEDF--------NAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAI 95 (406)
T ss_pred HHHhhhhhHhcchHHHHHHh--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHH
Confidence 33446677778888876553 5566788899999999999999999999999999999999998888888888
Q ss_pred HhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHH
Q 024030 99 AYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----STTSAFQ 174 (273)
Q Consensus 99 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l----~~~~~~~ 174 (273)
...++ ++.+++.|++.|+ +.+...+...+.+.|.+|+++|.+++++......++..+||.+++.+ +|++.|+
T Consensus 96 ~~~~~---~~~l~~~~~l~G~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~ 171 (406)
T PRK15402 96 LLAQS---IEQFTLLRFLQGI-GLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFV 171 (406)
T ss_pred HHHcc---HHHHHHHHHHHHh-HhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHH
Confidence 88877 8889999999998 55666678889999999999999999999888888999999888765 8999998
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchHHHHHHHHhhcchhHHHHHH
Q 024030 175 AATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVV 254 (273)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 254 (273)
+.++..++..+...+..||++++++++ .. ..+..+..+.+++||.++...+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~---~~~~~~~~~~~~~~~~~~~~~~~ 223 (406)
T PRK15402 172 LFAALAALSFFGLWRAMPETAGRVGEK-------------------------LS---LKELGRDYKLVLKNRRFVAGALA 223 (406)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcccccc-------------------------cc---HHHHHHHHHHHHcCcHHHHHHHH
Confidence 888777766655455566543221110 00 01223334457788988887777
Q ss_pred HHHhccccccceeeeec
Q 024030 255 AFFSGLSEGGMQASFLV 271 (273)
Q Consensus 255 ~~~~~~~~~~~~~~~~~ 271 (273)
.++.........++.|.
T Consensus 224 ~~~~~~~~~~~~~~~p~ 240 (406)
T PRK15402 224 LGLVSLPLLAWIALSPV 240 (406)
T ss_pred HHHHHHHHHHHHHHhHH
Confidence 66665544444333443
No 23
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=99.88 E-value=5.4e-21 Score=161.70 Aligned_cols=234 Identities=16% Similarity=0.108 Sum_probs=161.3
Q ss_pred hhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHH
Q 024030 9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL 88 (273)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~ 88 (273)
.++..++..+..........++.|.++++ +++.+..+.|++.+.+.++..+++++.|+++||+|||+.+..+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~ 74 (366)
T TIGR00886 2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKD-------DLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSL 74 (366)
T ss_pred chHHHHHHHHHHHHHHHHhHHhhhHHHHH-------HhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHH
Confidence 34556666777777778888999975543 34677788899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024030 89 TLSIIPLAILAYRR-SISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL 167 (273)
Q Consensus 89 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l 167 (273)
++..++..++.+.+ + ++.+++.|++.|+ +.+.. +...++++|++|+++|++++++.....++|..+++.+++.+
T Consensus 75 ~~~~i~~~~~~~~~~~---~~~~~~~~~~~g~-~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l 149 (366)
T TIGR00886 75 LLLAIPCLWAGLAVQS---YSVLLLLRLFIGI-AGGSF-ASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPI 149 (366)
T ss_pred HHHHHHHHHHHHHhhh---HHHHHHHHHHHHH-hchhh-HhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 99999988888887 7 8889999999998 44544 56788999999999999999999877777766665554322
Q ss_pred --------------hhHHHHH-HHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCcccccccc
Q 024030 168 --------------STTSAFQ-AATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKI 232 (273)
Q Consensus 168 --------------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (273)
+|++.|+ ..+++..+..++.....+|++++++++++.++. ++ ......
T Consensus 150 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~-~~~~~~--- 212 (366)
T TIGR00886 150 IGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADTPPGKPATGKLSFK-------------GA-RWSVGT--- 212 (366)
T ss_pred HHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhcccCCcccccchhcccc-------------cc-cccccc---
Confidence 5888884 434444444444344555544322211000000 00 000000
Q ss_pred chHHHHHHHHhhcchhHHHHHHHHHhccccccceeeeecc
Q 024030 233 PSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLVY 272 (273)
Q Consensus 233 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 272 (273)
...++ ....+++|+++...+..++....+.+..+++|.|
T Consensus 213 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (366)
T TIGR00886 213 GALGD-QLKVFRDRHTWILALLYSVTFGSFLGVSSIFAMF 251 (366)
T ss_pred hhHHH-HHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 01111 2235667888888877777766666666666655
No 24
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.87 E-value=1.9e-20 Score=160.71 Aligned_cols=172 Identities=17% Similarity=0.165 Sum_probs=141.8
Q ss_pred HHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHH
Q 024030 13 LFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSI 92 (273)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~ 92 (273)
.+...+...+......+..|.+.++. +.+..+.|++.+.+.++..++.++.|+++||+|||+++..+..+..
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 91 (406)
T PRK11551 20 CFLVALLEGLDLQSAGVAAPRMAQEF--------GLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFG 91 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence 34455555666666777777776543 6677788999999999999999999999999999999999998888
Q ss_pred HHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh----h
Q 024030 93 IPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----S 168 (273)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l----~ 168 (273)
++.+++.+.++ ++.+++.|++.|+ +.+...+...+++.|++|+++|++++++.+....+|..++|.+++.+ +
T Consensus 92 ~~~~~~~~~~~---~~~~~~~~~l~G~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 167 (406)
T PRK11551 92 LFSLATAQAWD---FPSLLVARLLTGV-GLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAA 167 (406)
T ss_pred HHHHHHHHhcc---HHHHHHHHHHHHh-hHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccC
Confidence 88888888877 8889999999998 65666688999999999999999999999999999999999888665 7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 024030 169 TTSAFQAATIVSMLAAAYMRVFLKDDVP 196 (273)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (273)
|+..|++.++..++..++....+||+++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 195 (406)
T PRK11551 168 WRHIFYVGGVGPLLLVPLLMRWLPESRA 195 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCChh
Confidence 8999988777666655555566777643
No 25
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.87 E-value=1.3e-20 Score=160.36 Aligned_cols=153 Identities=16% Similarity=0.124 Sum_probs=136.6
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCch
Q 024030 3 MEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKA 82 (273)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~ 82 (273)
|+++++.++.++...++...+.....+.+|.+.++. +.+..+.|++.+.+.++..+++++.|+++||+|||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~--------~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~ 72 (381)
T PRK03633 1 MSTYTRPVLLLLCGLLLLTLAIAVLNTLVPLWLAQE--------HLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNR 72 (381)
T ss_pred CcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHc--------CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 466777888889999999999999999999998653 556778899999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHH
Q 024030 83 MLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTL 162 (273)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~ 162 (273)
.+..+.+...++...+.+.++ ++.+++.|++.|+ +.+...+...+.+.+..++++|+++++......++|..+||.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~l~G~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 148 (381)
T PRK03633 73 SYYLASLIFAAGCAGLGLMVG---FWSWLAWRFVAGI-GCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQL 148 (381)
T ss_pred HHHHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998888888887 8999999999998 556666777788888899999999999999999999999999
Q ss_pred HHHHh
Q 024030 163 AARFL 167 (273)
Q Consensus 163 ~~~~l 167 (273)
+++.+
T Consensus 149 ~~~~l 153 (381)
T PRK03633 149 LVSKV 153 (381)
T ss_pred HHhcc
Confidence 99887
No 26
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.87 E-value=1.6e-20 Score=162.09 Aligned_cols=160 Identities=13% Similarity=0.148 Sum_probs=135.1
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHH
Q 024030 7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL 86 (273)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~ 86 (273)
++.+...++..+...+......+.+|.+.++ ++.+..+.+++.+.+.++..+++++.|+++||+|||+++..
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--------~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~ 88 (426)
T PRK12307 17 KNALFSAWLGYVFDGFDFMLIFYIMYLIKAD--------LGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMW 88 (426)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH--------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHH
Confidence 3445555666667777777777778877544 36666788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024030 87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF 166 (273)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~ 166 (273)
+.+...++..+..+.++ ++.+++.|++.|+ +.+...+....++.|++|+++|++++++...+..+|..++|.+.+.
T Consensus 89 ~~~~~~~~~~~~~~~~~---~~~l~~~r~l~G~-g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~ 164 (426)
T PRK12307 89 SIVAYSVGTGLSGLASG---VIMLTLSRFIVGM-GMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPS 164 (426)
T ss_pred HHHHHHHHHHHHHHHhH---HHHHHHHHHHHHH-HHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHH
Confidence 99999999988888887 8999999999998 5566668899999999999999999999999999999999887765
Q ss_pred h----hhHHHHHHHHH
Q 024030 167 L----STTSAFQAATI 178 (273)
Q Consensus 167 l----~~~~~~~~~~~ 178 (273)
+ +||+.|++...
T Consensus 165 l~~~~~w~~~f~i~~~ 180 (426)
T PRK12307 165 FAEAYGWRAAFFVGLL 180 (426)
T ss_pred HcccCCHHHHHHHHHH
Confidence 4 89999887543
No 27
>PRK10504 putative transporter; Provisional
Probab=99.87 E-value=2.4e-20 Score=163.11 Aligned_cols=176 Identities=15% Similarity=0.098 Sum_probs=148.3
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHH
Q 024030 7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL 86 (273)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~ 86 (273)
++.++.+....++..+..+...+.+|.+.++. +.+....|++.+.+.++..++.++.|+++||+|||+++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~--------g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 80 (471)
T PRK10504 9 RWQLWIVAFGFFMQSLDTTIVNTALPSMAQSL--------GESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFT 80 (471)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh--------CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHH
Confidence 44567777778888888888899999997653 6666778888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024030 87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF 166 (273)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~ 166 (273)
+..+..++.+.+.+.++ .+.+++.|+++|+ +.+...+...+.+.|.+|+++|+++.++.....++|..+||.+++.
T Consensus 81 ~~~~~~~~~~~~~~~~~---~~~l~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~ 156 (471)
T PRK10504 81 AIVLFTLGSLFCALSGT---LNELLLARVLQGV-GGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGL 156 (471)
T ss_pred HHHHHHHHHHHHHHhCC---HHHHHHHHHHHHh-hhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 88888888877777777 8888999999998 6666668899999999999999999999999999999999999887
Q ss_pred h----hhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 024030 167 L----STTSAFQAATIVSMLAAAYMRVFLKDD 194 (273)
Q Consensus 167 l----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (273)
+ +|++.|.+......+..+......|+.
T Consensus 157 l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~ 188 (471)
T PRK10504 157 LVEYASWHWIFLINIPVGIIGAIATLMLMPNY 188 (471)
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 6 899999988777666665545555543
No 28
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.87 E-value=1.8e-20 Score=159.18 Aligned_cols=162 Identities=15% Similarity=0.204 Sum_probs=139.0
Q ss_pred HHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhc
Q 024030 22 FATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYR 101 (273)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~ 101 (273)
++..+..|.+|.+.++. +.+..+.|++.+.+.++..+++++.|+++||+|||+.+..+.++..++...+.+.
T Consensus 5 ~~~~~~~p~~~~~~~~~--------~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~ 76 (377)
T PRK11102 5 LAIDMYLPALPVIAADF--------GVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALA 76 (377)
T ss_pred hHHHHHhccHHHHHHHh--------CCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHH
Confidence 45567779999997653 6667788999999999999999999999999999999999999999998888888
Q ss_pred cCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHH
Q 024030 102 RSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----STTSAFQAAT 177 (273)
Q Consensus 102 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l----~~~~~~~~~~ 177 (273)
++ ++.+++.|++.|+ +.+...+...+++.|++|+++|++++++.+....+|..++|.+++.+ +|++.|.+.+
T Consensus 77 ~~---~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~ 152 (377)
T PRK11102 77 QT---IDQLIYMRFLHGL-AAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLA 152 (377)
T ss_pred cc---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHH
Confidence 87 8889999999998 55666688899999999999999999999999999999999988766 7899998888
Q ss_pred HHHHHHHHHHHHHhcCCC
Q 024030 178 IVSMLAAAYMRVFLKDDV 195 (273)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~ 195 (273)
++.++..++..+..||++
T Consensus 153 ~~~~~~~~~~~~~~~~~~ 170 (377)
T PRK11102 153 LAAILAAALVFFFIPETL 170 (377)
T ss_pred HHHHHHHHHHHHhCCccC
Confidence 777766666566666653
No 29
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.87 E-value=1.2e-20 Score=165.42 Aligned_cols=174 Identities=11% Similarity=0.138 Sum_probs=149.7
Q ss_pred hHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHH
Q 024030 10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLT 89 (273)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~ 89 (273)
+..+.+..++..+......+.+|.+.++. +.+....|++.+.+.++..++.++.|+++||+|||+.++.+.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~--------g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~ 75 (485)
T TIGR00711 4 TIVLMLGTFMAVLDSTIVNVAIPTIAGDL--------GSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTF 75 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------CCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHH
Confidence 44556677777888888889999987653 5556678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh--
Q 024030 90 LSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL-- 167 (273)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l-- 167 (273)
+..++..++...++ ++.+++.|++.|+ +.+...+...+++.|.+|+++|+++.++......+|..+||.+++.+
T Consensus 76 ~~~~~~~~~~~~~~---~~~l~~~~~~~G~-~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 151 (485)
T TIGR00711 76 AFTLGSLLCGVAPN---LELMIIFRVIQGF-GGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIE 151 (485)
T ss_pred HHHHHHHHHhCcCC---HHHHHHHHHHHHh-hhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhcc
Confidence 99999999888888 8999999999998 55666689999999999999999999999999999999999998877
Q ss_pred --hhHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 024030 168 --STTSAFQAATIVSMLAAAYMRVFLKDDV 195 (273)
Q Consensus 168 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (273)
+|++.|++.+.+.++..++..+..||++
T Consensus 152 ~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~ 181 (485)
T TIGR00711 152 NYHWRWIFLINVPIGIIVVVVAFFILPRDK 181 (485)
T ss_pred CcCceehhhhhhHHHHHHHHHHHHHcCCcc
Confidence 8999999888777766666566666643
No 30
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.87 E-value=3.5e-20 Score=162.01 Aligned_cols=230 Identities=14% Similarity=0.138 Sum_probs=155.1
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHH
Q 024030 8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP 87 (273)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~ 87 (273)
+.+...+...+......+...+.+|.+.++. +.+..+.|++.+.+.++..+++++.|+++||+|||+++..+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~ 107 (476)
T PLN00028 36 RAFHLSWISFFTCFVSTFAAAPLLPIIRDNL--------NLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFL 107 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHH
Confidence 3444445555556666666777788775543 56667778888889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 024030 88 LTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF- 166 (273)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~- 166 (273)
.+...++.++..+.++ ++.+++.|++.|+ +.+.. .....+++|++|+++|++++|+.+...++|..+++.+...
T Consensus 108 ~~~~~~~~~~~~~~~s---~~~l~~~r~l~G~-~~~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i 182 (476)
T PLN00028 108 LMLTAPAVFCMSLVSS---ATGFIAVRFFIGF-SLATF-VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLV 182 (476)
T ss_pred HHHHHHHHHHHHHhcC---HHHHHHHHHHHHH-HHHhh-HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888877 7888899999998 44444 3456688999999999999999987777776666443321
Q ss_pred ------------hhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccch
Q 024030 167 ------------LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPS 234 (273)
Q Consensus 167 ------------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (273)
.+||+.|++.+++.++..++..+ +++++++.+.++ . +++.+. + + .+
T Consensus 183 ~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~-~~~~~p~~~~~~------------~---~~~~~~--~--~--~~ 240 (476)
T PLN00028 183 FPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLT-LGQDLPDGNYRE------------L---KKSGTM--P--K--DS 240 (476)
T ss_pred HHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHH-HcCcCCCCchhh------------H---HhcCcc--c--c--cc
Confidence 37999999988887766655444 443222111000 0 000000 0 0 01
Q ss_pred HHHHHHHHhhcchhHHHHHHHHHhccccccceeeeecc
Q 024030 235 IRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLVY 272 (273)
Q Consensus 235 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 272 (273)
..+.++...++++++...+..++.........+++|.|
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 278 (476)
T PLN00028 241 FSKVLRYGVTNYRTWILALTYGYSFGVELTMDNIIAEY 278 (476)
T ss_pred HHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 22233345677888877776665555545555556554
No 31
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.87 E-value=6e-20 Score=156.93 Aligned_cols=176 Identities=19% Similarity=0.227 Sum_probs=147.3
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHH
Q 024030 8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP 87 (273)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~ 87 (273)
|-+...+...+....+.....+.+|.+.++. +.+..+.++..+.+.++..+++++.|+++||+|||+.+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~--------~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~ 74 (392)
T PRK10473 3 RFLLCSFALVLLYPAGIDMYLVGLPRIAADL--------NASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPG 74 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh--------CCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHH
Confidence 3445556667777778788888999987653 56667789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024030 88 LTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL 167 (273)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l 167 (273)
.+...++...+...++ .+.+++.|++.|+ +.+...+...+++.|.+|+++|+++.++.+....+|..++|.+++.+
T Consensus 75 ~~~~~i~~~~~~~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l 150 (392)
T PRK10473 75 AALFIIASLLCSLAET---SSLFLAGRFLQGI-GAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLI 150 (392)
T ss_pred HHHHHHHHHHHHHhCc---HHHHHHHHHHHHh-hhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988888888888777 7888899999998 56666678899999999999999999999999999999999988765
Q ss_pred ----hhHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 024030 168 ----STTSAFQAATIVSMLAAAYMRVFLKDDV 195 (273)
Q Consensus 168 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (273)
+|++.+++.+++.++..++..+..||++
T Consensus 151 ~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 182 (392)
T PRK10473 151 MLKFPWQSLFYTMAAMGILVLLLSLFILKETR 182 (392)
T ss_pred HhCcChHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 7899999888777766666556667653
No 32
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.87 E-value=2.6e-20 Score=161.98 Aligned_cols=215 Identities=13% Similarity=0.059 Sum_probs=150.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccC-chhHHHHHHHHHHHhhhchhhH
Q 024030 47 SLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRS-ISFFYAYYALRTLTAMVCEGSI 125 (273)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~g~~~~~~~ 125 (273)
+.+....|++.+...++..+++++.|+++||+|||++++.+.++.+++.+++.+.+. ..+++.+++.|++.|+ +.+..
T Consensus 59 g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi-~~g~~ 137 (452)
T PRK11273 59 GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGW-FQGMG 137 (452)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHH-HHhcc
Confidence 566678899999999999999999999999999999999999988888877776531 1126778888999998 55555
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHH-HHHHHHHHh----hhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 024030 126 NCLALAYVADNISERQRASAFGILLGVLSASFV-CGTLAARFL----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDD 200 (273)
Q Consensus 126 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~gp~~~~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (273)
.+.....+.|++|+++|++++++.+.+.++|.. .+|+++..+ +||+.|++.++..++..++..+++||++++...
T Consensus 138 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~ 217 (452)
T PRK11273 138 WPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTPQSCGL 217 (452)
T ss_pred chHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCC
Confidence 577778889999999999999999999998864 456543222 899999998877777666656777776543211
Q ss_pred CCCCCCCCCCCCcccccCCCCCCCccccccccchHHHH-HHHHhhcchhHHHHHHHHHhccccccceeeeeccC
Q 024030 201 DDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDL-ICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLVYI 273 (273)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 273 (273)
+++.+.. ++.+++.+..++. ..+.++. .+.++|+|.++...+..++......+..+++|.|+
T Consensus 218 ~~~~~~~--------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l 280 (452)
T PRK11273 218 PPIEEYK--------NDYPDDYNEKHEQ---ELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYL 280 (452)
T ss_pred CChhhhh--------hccccccccccCC---CccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1000000 0000000000000 0122222 23367889999988888888887778888888774
No 33
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=99.87 E-value=4.2e-20 Score=158.47 Aligned_cols=224 Identities=15% Similarity=0.138 Sum_probs=165.9
Q ss_pred hHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHH
Q 024030 10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLT 89 (273)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~ 89 (273)
+..+....+...+......|.+|.+.++ ++.+..+.|++.+.+.++..+++++.|++.||+|||+++..+.+
T Consensus 5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~--------~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~ 76 (410)
T TIGR00885 5 FALITSLFALWGFANDITNPMVPQFQQA--------FTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLF 76 (410)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH--------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 4445555666667777778899988544 36677889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh--
Q 024030 90 LSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL-- 167 (273)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l-- 167 (273)
+.+++..++......++++.+++.|++.|+ +.+...+..++++.+..|+++|++..++.+...++|..+||.+++.+
T Consensus 77 l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~-g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~ 155 (410)
T TIGR00885 77 LYALGAFLFWPAAEIMNYTLFLVGLFILTA-GLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLIL 155 (410)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHh-hHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999888776543322228889999999998 67777788999999999999999999999999999999998887644
Q ss_pred ----------------------------hhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCC
Q 024030 168 ----------------------------STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNE 219 (273)
Q Consensus 168 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (273)
+||++|.+.+++.++..++. .+.+.++.+++++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~-~~~~~p~~~~~~~------------------ 216 (410)
T TIGR00885 156 SNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLI-MLTKMPALNHSDA------------------ 216 (410)
T ss_pred cCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCCCCcccc------------------
Confidence 48999988877665554432 2222221111000
Q ss_pred CCCCCccccccccchHHHHHHHHhhcchhHHHHHHHHHhccccccceeeeecc
Q 024030 220 SNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLVY 272 (273)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 272 (273)
. ++ +.++..+.++|+|+++...+..|++...+.+..++++.|
T Consensus 217 ----~-~~------~~~~~~~~~~~~~~~~~~~l~~f~yvg~e~~~~s~l~~y 258 (410)
T TIGR00885 217 ----K-QI------SFSASLSRLARIRHYREGVIAQFFYVGVQIMCWTFIIQY 258 (410)
T ss_pred ----c-cc------cchhhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00 111112235678898888888888888887777766665
No 34
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.87 E-value=3e-21 Score=168.54 Aligned_cols=231 Identities=13% Similarity=0.048 Sum_probs=159.7
Q ss_pred HHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHh
Q 024030 21 GFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAY 100 (273)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~ 100 (273)
........+..|.+.+| ++.+..+.|++.+.+.+++.+++++.|+++||+|||+++..+.+...+.....+.
T Consensus 42 y~~r~~~~~~~~~i~~~--------~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~ 113 (467)
T PRK09556 42 YLIRKNFKAAQNDMIST--------YGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGA 113 (467)
T ss_pred HHHhcChhhhhHHHHHh--------cCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHH
Confidence 33444555667776544 3667788999999999999999999999999999999998887777766655543
Q ss_pred -----ccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-------h
Q 024030 101 -----RRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL-------S 168 (273)
Q Consensus 101 -----~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l-------~ 168 (273)
.++ ++.+++.|++.|+ +.+...+...++++|++|+++|++++|+.....++|..+++.+..++ +
T Consensus 114 ~~~~~~~~---~~~l~~~r~l~G~-~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~ 189 (467)
T PRK09556 114 SLGSGSVS---LGLMIALWALSGF-FQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGH 189 (467)
T ss_pred HHhcccch---HHHHHHHHHHHHH-HHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCc
Confidence 355 8899999999998 55656688899999999999999999999999999999998776543 3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchHHH-HHHHHhhcch
Q 024030 169 TTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRD-LICLLRSSVT 247 (273)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~ 247 (273)
|+..|.+.+++.++..++.++..++++++.+..++.+.. ++.. .++++. .+ .++ .+.++ ..+...|+|.
T Consensus 190 ~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~~~~~----~~~~--~~~~~~--~~-~~~-~~~~~~~~~~~l~~~~ 259 (467)
T PRK09556 190 VIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKAEEIF----GEPI--SEEDKE--TE-STD-MTKWQIFVEYVLKNPV 259 (467)
T ss_pred chhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCChhhcc----cCcc--chhhhc--cc-ccc-CcHHHHHHHHHHcChH
Confidence 777777777766665555455555543322211100000 0000 000000 00 000 01122 2233678899
Q ss_pred hHHHHHHHHHhccccccceeeeeccC
Q 024030 248 LSQAAVVAFFSGLSEGGMQASFLVYI 273 (273)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~yl 273 (273)
++...+..++....+.+..+|.|.|+
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~p~yl 285 (467)
T PRK09556 260 IWLLCFANIFLYIVRIGIDNWSPVYA 285 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888888888888774
No 35
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.87 E-value=1.2e-20 Score=161.48 Aligned_cols=176 Identities=14% Similarity=0.184 Sum_probs=144.8
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHH
Q 024030 7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL 86 (273)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~ 86 (273)
++.+...++..+...+......+..|.+.++. +.+..+.|++.+.+.++..+++++.|.++||+|||++++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~ 82 (405)
T TIGR00891 11 WNAFSAAWLGWLLDAFDFFLVALVLAEVAGEF--------GLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVT 82 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 44556667777888888888888888875443 6666788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024030 87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF 166 (273)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~ 166 (273)
+.+..+++..+..+.++ ++.+++.|++.|+ +.+...+...+++.|++|+++|++++++.+....+|..++|.+++.
T Consensus 83 ~~~~~~~~~~~~~~~~~---~~~l~~~~~l~G~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~ 158 (405)
T TIGR00891 83 SIVLFSAGTLACGFAPG---YITMFIARLVIGI-GMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSL 158 (405)
T ss_pred HHHHHHHHHHHHHHhcc---HHHHHHHHHHHHh-hhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888888888887 8899999999998 5566668899999999999999999999999999999999988776
Q ss_pred h----h--hHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 024030 167 L----S--TTSAFQAATIVSMLAAAYMRVFLKDDV 195 (273)
Q Consensus 167 l----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (273)
+ + |++.|.+.++..++.. ......||++
T Consensus 159 l~~~~~~~w~~~f~~~~~~~~~~~-~~~~~~~~~~ 192 (405)
T TIGR00891 159 VVPVWGDGWRALFFISILPIIFAL-WLRKNIPEAE 192 (405)
T ss_pred HHHhcCccHHHHHHHHHHHHHHHH-HHHHhCCCCh
Confidence 5 4 8988887654444433 3344566654
No 36
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.87 E-value=5.1e-20 Score=158.64 Aligned_cols=225 Identities=15% Similarity=0.117 Sum_probs=162.6
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHH
Q 024030 7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL 86 (273)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~ 86 (273)
+|.+...+...++..++..+..+.+|.+.++. +.+..+.|++.+.+.++..+++++.|+++||+|||+++..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~ 87 (417)
T PRK10489 16 HPAFRAVFIARFISIFGLGLLGVAVPVQIQMM--------TGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILL 87 (417)
T ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH--------HCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEe
Confidence 45566667777888888888899999998664 4456788999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHh-----ccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHH
Q 024030 87 PLTLSIIPLAILAY-----RRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGT 161 (273)
Q Consensus 87 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp 161 (273)
+..+..++...... .++ ++.+++.|++.|+ +.+...+...+++.|.+|+++|+++.++.....++|..+||
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 163 (417)
T PRK10489 88 ARGTCGLGFIGLALNAFLPEPS---LLAIYLLGLWDGF-FGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISP 163 (417)
T ss_pred hHHHHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHH-HHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHH
Confidence 87776665544332 233 7788889999998 55666678889999999999999999999999999999999
Q ss_pred HHHHHh----hhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchHHH
Q 024030 162 LAARFL----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRD 237 (273)
Q Consensus 162 ~~~~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (273)
.+++.+ +|++.|.+.++..++..+. .+.+|+++++++++ .+..++.++
T Consensus 164 ~l~g~l~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~---------------------------~~~~~~~~~ 215 (417)
T PRK10489 164 ALGGLLIAAGGVAWNYGLAAAGTFITLLP-LLRLPALPPPPQPR---------------------------EHPLRSLLA 215 (417)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHhCCCCCCCCccc---------------------------ccchHHHHH
Confidence 998876 6888888776665554443 44556543221110 000112333
Q ss_pred HHHHHhhcchhHHHHHHHHHhccccccceeeeecc
Q 024030 238 LICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLVY 272 (273)
Q Consensus 238 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 272 (273)
.++..+++|.++...+..++... ..+.+.++|.|
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~ 249 (417)
T PRK10489 216 GFRFLLASPVVGGIALLGGLLTM-ASAVRVLYPAL 249 (417)
T ss_pred HHHHHHcChHHHHHHHHHHHHHH-HHhHHHhhHHH
Confidence 44456778887766655554433 34455566655
No 37
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.86 E-value=3.8e-20 Score=160.38 Aligned_cols=215 Identities=13% Similarity=0.087 Sum_probs=150.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccCc-hhHHHHHHHHHHHhhhchhhH
Q 024030 47 SLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSI-SFFYAYYALRTLTAMVCEGSI 125 (273)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~g~~~~~~~ 125 (273)
+.+..+.|++.+++.++..+++++.|+++||+|||+.+..+.++..++..+....++. .+++.+.+.|++.|+ +.+..
T Consensus 57 g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~-~~g~~ 135 (438)
T TIGR00712 57 GFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGW-FQGMG 135 (438)
T ss_pred CCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHH-Hhhcc
Confidence 5666778999999999999999999999999999999999988888887776654321 126677788999997 55655
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHH-----hhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 024030 126 NCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF-----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDD 200 (273)
Q Consensus 126 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~-----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (273)
.+.....+.|++|+++|++++++.+...++|..++|.+.+. .+||..|++.+++.++..+..++.+||++++.+.
T Consensus 136 ~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~ 215 (438)
T TIGR00712 136 WPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGL 215 (438)
T ss_pred hHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCC
Confidence 67788899999999999999999999999999888766543 2799999998888877666656677775443211
Q ss_pred CCCCCCCCCCCCcccccCCCCCCCccccccccchHHHH-HHHHhhcchhHHHHHHHHHhccccccceeeeeccC
Q 024030 201 DDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDL-ICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLVYI 273 (273)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 273 (273)
++..+..++ ..++..+. ++ ++. +.++. .+..+|+|.++...+..++.....++..+++|.|+
T Consensus 216 ~~~~~~~~~-------~~~~~~~~-~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l 278 (438)
T TIGR00712 216 PPIEEYRND-------YPDDYNEK-AE--QEL-TAKEIFMQYVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYL 278 (438)
T ss_pred CCchhcccc-------cccccccc-cc--ccc-chHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 100000000 00000000 00 000 11221 23367889999888887777777777777777763
No 38
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.86 E-value=8.3e-20 Score=156.71 Aligned_cols=183 Identities=21% Similarity=0.228 Sum_probs=148.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhh
Q 024030 5 KEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAML 84 (273)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~ 84 (273)
++++.+...++..++...+.....+++|.+.++. +.+ .......+.|++.+++.++..+++++.|+++||+|||+.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~ 87 (408)
T PRK09874 11 NWKRNLTVAWLGCFLTGAAFSLVMPFLPLYVEQL-GVT--GHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIML 87 (408)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHh-CCc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHH
Confidence 4566777778888888889899999999998773 111 1122234568899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 024030 85 TLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAA 164 (273)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~ 164 (273)
..+.+...++..++...++ ++.+++.|++.|+ +.+.. +...+++.|..|+++|++++++......+|..++|.++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 162 (408)
T PRK09874 88 LRSALGMGIVMVLMGLAQN---IWQFLILRALLGL-LGGFV-PNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAG 162 (408)
T ss_pred HHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHH-hhhhH-HhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9998888888877777777 8889999999998 44544 77788899999999999999999999999999999988
Q ss_pred HHh----hhHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 024030 165 RFL----STTSAFQAATIVSMLAAAYMRVFLKDDV 195 (273)
Q Consensus 165 ~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (273)
+.+ +|++.|.+.+++.++..+...+..||++
T Consensus 163 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (408)
T PRK09874 163 GLLADSYGLRPVFFITASVLFLCFLVTLFCIRENF 197 (408)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 875 7899998888777666666556666643
No 39
>PRK11043 putative transporter; Provisional
Probab=99.86 E-value=1.3e-19 Score=155.38 Aligned_cols=165 Identities=21% Similarity=0.191 Sum_probs=133.6
Q ss_pred HHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHH
Q 024030 16 TVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPL 95 (273)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~ 95 (273)
...+......+..|.+|.+.++ ++.+..+.|++.+++.++..++++++|+++||+|||+.+..+..+..++.
T Consensus 14 ~~~~~~~~~~~~~p~~~~i~~~--------~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 85 (401)
T PRK11043 14 LSMLGFLATDMYLPAFKAIQAD--------LQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGS 85 (401)
T ss_pred HHHHHHHHHHHHHhhHHHHHHH--------HCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHH
Confidence 3444455566677777776544 36677789999999999999999999999999999999999998888888
Q ss_pred HHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHH
Q 024030 96 AILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----STTS 171 (273)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l----~~~~ 171 (273)
....+.++ ++.+++.|++.|+ +.+...+...+++.|.+|++++++..+.......++..++|.+++.+ +|++
T Consensus 86 ~~~~~~~~---~~~l~~~~~l~G~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~ 161 (401)
T PRK11043 86 LGMLWVES---AAQLLVLRFVQAV-GVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQA 161 (401)
T ss_pred HHHHHhcC---HHHHHHHHHHHHh-hhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHH
Confidence 88888877 8889999999998 44555567788999999999999999998888889999999888776 8999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC
Q 024030 172 AFQAATIVSMLAAAYMRVFLKD 193 (273)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~ 193 (273)
.|++.++..++..+. .+..+|
T Consensus 162 ~~~~~~~~~~~~~~~-~~~~~~ 182 (401)
T PRK11043 162 IFATLFAITLLLILP-TLRLKP 182 (401)
T ss_pred HHHHHHHHHHHHHHH-HHHcCC
Confidence 998887777665554 334444
No 40
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.86 E-value=5.8e-20 Score=158.95 Aligned_cols=168 Identities=11% Similarity=0.020 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHH
Q 024030 13 LFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSI 92 (273)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~ 92 (273)
..+..++..+....+....|...++....+.+ .....+.+.+.+...++..++++++|+++||+|||+++..+.+++.
T Consensus 27 ~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~ 104 (432)
T PRK10406 27 ASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNT--TTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMC 104 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 34556677777777666666554443211111 1222334555566677778999999999999999999999999999
Q ss_pred HHHHHHHhccCch-----hHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHH--
Q 024030 93 IPLAILAYRRSIS-----FFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAAR-- 165 (273)
Q Consensus 93 ~~~~~~~~~~~~~-----~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~-- 165 (273)
++..+.++.++.. ....+++.|+++|+ +.|...+...+++.|++|+++|+++.++...+...|..+++.+..
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~-g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~ 183 (432)
T PRK10406 105 FGSLVIACLPGYETIGTWAPALLLLARLFQGL-SVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVL 183 (432)
T ss_pred HHHHHHhhcCCchhHHHHHHHHHHHHHHHHHh-hhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988877621 12468899999998 666666899999999999999999999988888888777765432
Q ss_pred ----------HhhhHHHHHHHHHHHHHH
Q 024030 166 ----------FLSTTSAFQAATIVSMLA 183 (273)
Q Consensus 166 ----------~l~~~~~~~~~~~~~~~~ 183 (273)
..+||.+|++.++..++.
T Consensus 184 ~~~~~~~~~~~~gWr~~F~i~~~~~ll~ 211 (432)
T PRK10406 184 QQTLEDAELREWGWRIPFALGAVLAVVA 211 (432)
T ss_pred HHhCCHHHHhccchHHHHHHHHHHHHHH
Confidence 238999998876665543
No 41
>TIGR00895 2A0115 benzoate transport.
Probab=99.86 E-value=1.2e-20 Score=160.95 Aligned_cols=171 Identities=20% Similarity=0.240 Sum_probs=139.0
Q ss_pred HHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHH
Q 024030 14 FVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSII 93 (273)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~ 93 (273)
....+..........+..|.+.++ ++.+..+.|++.+...++..++.++.|+++||+|||+.+..+.++..+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~ 94 (398)
T TIGR00895 23 FLIMLMDGYDLAAMGFAAPAISAE--------WGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSV 94 (398)
T ss_pred HHHHHHHHHHHHHHHhhHHHHhhc--------cCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHH
Confidence 334444445555566677777544 255667789999999999999999999999999999999999988888
Q ss_pred HHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh----hh
Q 024030 94 PLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----ST 169 (273)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l----~~ 169 (273)
+..+..+.++ ++.+++.+++.|+ +.+...+...+++.|.+|+++|++++++......+|..++|.+++.+ +|
T Consensus 95 ~~~~~~~~~~---~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~ 170 (398)
T TIGR00895 95 FTLLCALATN---VTQLLILRFLAGL-GLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGW 170 (398)
T ss_pred HHHHHHHccc---hHHHHHHHHHHhc-ccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccc
Confidence 8888888777 8888999999998 55666689999999999999999999999999999999999988776 78
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 024030 170 TSAFQAATIVSMLAAAYMRVFLKDDVP 196 (273)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (273)
+..+.+.+++..+..++.....||+++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (398)
T TIGR00895 171 RSLFYVGGIAPLLLLLLLMRFLPESID 197 (398)
T ss_pred eeehhhhhhHHHHHHHHHHHhCCCCCh
Confidence 888888766666655555666777643
No 42
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.85 E-value=6.7e-20 Score=155.49 Aligned_cols=172 Identities=18% Similarity=0.248 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHH-HHHHHH
Q 024030 14 FVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL-PLTLSI 92 (273)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~-~~~~~~ 92 (273)
.+..++..++.....|.+|.|+++ +++.+..+.|++.+.+.+...+.+++.|+++||+||||.++. +.....
T Consensus 3 ~~~~~~~~~~~~~~~~~l~~~l~~-------~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~ 75 (375)
T TIGR00899 3 LLVAFLTGIAGALQFPTLSLFLSE-------EVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAA 75 (375)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHc-------ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 345677788888999999999754 336677889999999999999999999999999999987654 555556
Q ss_pred HHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHH--HHHHHHHHHHHHHHHHHHHHHh---
Q 024030 93 IPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASA--FGILLGVLSASFVCGTLAARFL--- 167 (273)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~--~~~~~~~~~~g~~~gp~~~~~l--- 167 (273)
++..++.+.++ ++.+++.|++.|. ..+...+...++..|..|+++|+++ .+......++|..+||.+++.+
T Consensus 76 ~~~~~~~~~~~---~~~l~~~~~~~g~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~ 151 (375)
T TIGR00899 76 LACLLFAWNRN---YFLLLVLGVLLSS-FASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALG 151 (375)
T ss_pred HHHHHHHhcch---HHHHHHHHHHHHh-hhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHh
Confidence 66667777777 7888888888886 4455567888888998887777654 5777788889999999888766
Q ss_pred -hhHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 024030 168 -STTSAFQAATIVSMLAAAYMRVFLKDDVP 196 (273)
Q Consensus 168 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (273)
+||+.|++.++..++..++.++.+||.++
T Consensus 152 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 181 (375)
T TIGR00899 152 FGFTVMFLTAALAFVLCGVLVWLFLPSYPR 181 (375)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 78999999888777666665666777543
No 43
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.85 E-value=8.1e-20 Score=154.66 Aligned_cols=159 Identities=18% Similarity=0.156 Sum_probs=129.3
Q ss_pred HHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccC
Q 024030 24 TMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRS 103 (273)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~ 103 (273)
.+...+..|.+.++ ++.+..+.|++.+++.++..+++++.|+++||+|||+++..+.++..++...+.+.++
T Consensus 19 ~~~~~~~~~~~~~~--------~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~ 90 (377)
T TIGR00890 19 VYTWTLLAPPLGRY--------FGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADS 90 (377)
T ss_pred HhhhhhHHHHHHHH--------hCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHH
Confidence 44556677777544 3677788999999999999999999999999999999999999999999988888888
Q ss_pred chhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHH
Q 024030 104 ISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----STTSAFQAATIV 179 (273)
Q Consensus 104 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l----~~~~~~~~~~~~ 179 (273)
++.+++.|++.|+ +.+...+.....+.+++| ++|+++.++.....++|..+++.+.+.+ +||+.|.+.++.
T Consensus 91 ---~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~ 165 (377)
T TIGR00890 91 ---LAALYLTYGLASA-GVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGII 165 (377)
T ss_pred ---HHHHHHHHHHHhH-HHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 8999999999998 555555677778888887 6799999999999999987655444433 799999998888
Q ss_pred HHHHHHHHHHHhcCCC
Q 024030 180 SMLAAAYMRVFLKDDV 195 (273)
Q Consensus 180 ~~~~~~~~~~~~~~~~ 195 (273)
.++..+...+..++++
T Consensus 166 ~~~~~~~~~~~~~~~~ 181 (377)
T TIGR00890 166 FLLVIVLGAFLIGYPP 181 (377)
T ss_pred HHHHHHHHHHheecCc
Confidence 7777666555565543
No 44
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.85 E-value=1.2e-20 Score=164.86 Aligned_cols=212 Identities=13% Similarity=0.087 Sum_probs=156.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhc--cCchhHHHHHHHHHHHhhhch
Q 024030 45 ECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYR--RSISFFYAYYALRTLTAMVCE 122 (273)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~g~~~~ 122 (273)
+++.+..+.|++.+.+.+++.+++++.|+++||+|||+.+..+.++..++..+.... .+ ++.+++.|+++|+ +.
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~---~~~l~~~r~~~G~-~~ 145 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGG---IALVVFCRVIQGL-AQ 145 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcC---chHHHHHHHHHHH-hc
Confidence 567888999999999999999999999999999999999999988888777665433 33 6778899999998 66
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 024030 123 GSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL-----STTSAFQAATIVSMLAAAYMRVFLKDDVPN 197 (273)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (273)
+...+....+++|++|+++|++++++...+..+|..++|.+++.+ +|+.+|++.++..++..++.+...+|+++.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~ 225 (465)
T TIGR00894 146 GSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSI 225 (465)
T ss_pred ccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCccc
Confidence 777789999999999999999999999999999999999887765 788899998887766655544445554432
Q ss_pred CCCCCCCCCCCCCCCcccccCCCCCCCccccccccchHHHHHHHHhhcchhHHHHHHHHHhccccccceeeeeccC
Q 024030 198 DDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLVYI 273 (273)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 273 (273)
+++.++. .++..++..++++. + .+...+++ .+.++|.++...+..++.......+.+++|.|+
T Consensus 226 ~~~~~~~------~~~~i~~~~~~~~~--~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l 288 (465)
T TIGR00894 226 HPCISKF------EKKYINSSLQGQKG--S-TRQSLPIK----AIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFI 288 (465)
T ss_pred CCCCCHH------HHHHHHhhcccccC--C-CCCCCCHH----HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2211000 00000000000000 0 01111333 367889999999999999988888888888774
No 45
>PRK03699 putative transporter; Provisional
Probab=99.85 E-value=9.3e-20 Score=155.87 Aligned_cols=170 Identities=14% Similarity=0.108 Sum_probs=138.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhh
Q 024030 5 KEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAML 84 (273)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~ 84 (273)
++++..+..++..++.........+.+|.+.++ ++.+..+.|++.+.+.++..+++++.|+++||+|||+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~--------~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~ 75 (394)
T PRK03699 4 NRIKLTWISFLSYALTGALVIVTGMVMGPIAEY--------FNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQL 75 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH--------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 344555555666666666666777788887654 366777889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 024030 85 TLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAA 164 (273)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~ 164 (273)
..+.++..++..+..+.++ ++.+++.|++.|+ +.+...+...+++.|.+|+++|+++++..+....+|..++|.+.
T Consensus 76 ~~~~~~~~i~~~l~~~~~~---~~~~~~~~~l~G~-~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 151 (394)
T PRK03699 76 IFGFALMILAVAGLMFSHS---LALFSIAMFVLGV-VSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIA 151 (394)
T ss_pred HHHHHHHHHHHHHHHHcch---HHHHHHHHHHHHH-hhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988888888888777 8889999999998 55656678889999999999999999999888888888888876
Q ss_pred HHh-----hhHHHHHHHHHHHHHHHHH
Q 024030 165 RFL-----STTSAFQAATIVSMLAAAY 186 (273)
Q Consensus 165 ~~l-----~~~~~~~~~~~~~~~~~~~ 186 (273)
+.+ +||++|.+.++..++..++
T Consensus 152 ~~l~~~~~gw~~~f~~~~~~~~~~~~~ 178 (394)
T PRK03699 152 AYLLARSIEWYWVYACIGLVYVAIFIL 178 (394)
T ss_pred HHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 654 7999998877766555443
No 46
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.85 E-value=6.9e-20 Score=156.58 Aligned_cols=145 Identities=9% Similarity=0.071 Sum_probs=123.0
Q ss_pred HhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccCc
Q 024030 25 MMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSI 104 (273)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~ 104 (273)
....+.+|.+.+| ++.+..+.|++.+.+.++..+++++.|+++||+|||+++..+..+.+++.+.+.++++
T Consensus 26 ~~~~~~lp~i~~~--------~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~- 96 (393)
T PRK09705 26 TSVGPLLPQLRQA--------SGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQ- 96 (393)
T ss_pred hccchhHHHHHHH--------hCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcc-
Confidence 5566788888654 3677788999999999999999999999999999999999999999999999999998
Q ss_pred hhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHHH
Q 024030 105 SFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL-----STTSAFQAATIV 179 (273)
Q Consensus 105 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l-----~~~~~~~~~~~~ 179 (273)
++.+++.|++.|+ +.+...+...+.+.+++| ++|++++++...+...|..+|+.+++.+ +||..+...++.
T Consensus 97 --~~~ll~~r~l~Gi-g~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~ 172 (393)
T PRK09705 97 --SALLLSSALLGGV-GIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALP 172 (393)
T ss_pred --hHHHHHHHHHHHh-HHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 8899999999998 666666788889999987 7899999999888888887777776654 788877665554
Q ss_pred HHH
Q 024030 180 SML 182 (273)
Q Consensus 180 ~~~ 182 (273)
.++
T Consensus 173 ~~~ 175 (393)
T PRK09705 173 AVV 175 (393)
T ss_pred HHH
Confidence 433
No 47
>PRK10133 L-fucose transporter; Provisional
Probab=99.85 E-value=4.3e-19 Score=153.50 Aligned_cols=144 Identities=16% Similarity=0.151 Sum_probs=119.0
Q ss_pred hHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHH
Q 024030 10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLT 89 (273)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~ 89 (273)
+..+....+...+......+.+|.+.++ ++.+..+.|+..+.+.++..+++++.|+++||+|||+++..+..
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~p~i~~~--------~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~ 99 (438)
T PRK10133 28 FALLCSLFFLWAVANNLNDILLPQFQQA--------FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLF 99 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 3444555555666677777888887433 36677889999999999999999999999999999999999999
Q ss_pred HHHHHHHHH---HhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024030 90 LSIIPLAIL---AYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAAR 165 (273)
Q Consensus 90 ~~~~~~~~~---~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~ 165 (273)
+..++.+++ ...++ ++.+++.|++.|+ +.+...+..++++.|..|+++|.+.+++.+....+|..+||.+++
T Consensus 100 ~~~~~~~l~~~~~~a~~---~~~ll~~r~l~G~-g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~ 174 (438)
T PRK10133 100 LYALGAALFWPAAEIMN---YTLFLVGLFIIAA-GLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQ 174 (438)
T ss_pred HHHHHHHHHHHHHhcCC---HHHHHHHHHHHHH-HHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988775 34566 8899999999998 667777899999999887777777899999999999999987754
No 48
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.85 E-value=1.4e-20 Score=161.92 Aligned_cols=215 Identities=15% Similarity=0.117 Sum_probs=171.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchh
Q 024030 44 DECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEG 123 (273)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 123 (273)
.++..+..+.|++.+.++.|+++++.+.|+++||+|.|+++..+.++.+++.++...+.+.+ ++.+++.|+++|+ +.|
T Consensus 66 ~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~-~~~~~~~R~lqGl-~~g 143 (466)
T KOG2532|consen 66 GEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIG-FYLLLVLRFLQGL-GQG 143 (466)
T ss_pred ceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhc-chhhHHHHHHhHH-HHh
Confidence 46788899999999999999999999999999999999999999999999999888766544 4578999999998 778
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 024030 124 SINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL-----STTSAFQAATIVSMLAAAYMRVFLKDDVPND 198 (273)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (273)
..+|+...+.++|.|++||++..++...+..+|.+++-+++|.+ ||+.+|++.+.++++..++..++..|++.++
T Consensus 144 ~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h 223 (466)
T KOG2532|consen 144 VLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKH 223 (466)
T ss_pred HHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccC
Confidence 88899999999999999999999999999999999998777776 8999999999999888877566666655543
Q ss_pred CCCCCCCCCCCCCCcccccCCCCCCCccccccccchHHHHHHHHhhcchhHHHHHHHHHhccccccceeeeeccC
Q 024030 199 DDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLVYI 273 (273)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 273 (273)
+..+ .++.+..+++...++..++...++++ +.++|.+|...+..++.+.+.+.+..+.|.|+
T Consensus 224 ~~is---------~~El~~I~~~k~~~~~~~~~~vP~~~----i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~ 285 (466)
T KOG2532|consen 224 PNIS---------EKELKYIEKGKSEAHVKKKPPVPYKA----ILTSPPVWAIWISAFGGNWGFYLLLTYLPTYL 285 (466)
T ss_pred CCCC---------HHHHHHHHhcccccccCCCCCCCHHH----HHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3210 00011001110111111112335654 77899999999999999999999999999985
No 49
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=99.85 E-value=4.8e-19 Score=151.64 Aligned_cols=219 Identities=14% Similarity=0.084 Sum_probs=163.1
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHH
Q 024030 7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL 86 (273)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~ 86 (273)
+|.++...+.........++..+..+.+.+ .+++++..+.+++.++..++..+++++.|++.||+|.|+++.+
T Consensus 33 ~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~-------~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~ 105 (462)
T PRK15034 33 RRNLWISVSCLLLAFCVWMLFSAVTVNLNK-------IGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVF 105 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHH
Confidence 356666666666666666777777666643 2457888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhc-----cCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHH--
Q 024030 87 PLTLSIIPLAILAYR-----RSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVC-- 159 (273)
Q Consensus 87 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-- 159 (273)
+.++..+......+. ++ ++.+++.|++.|+ + +...+.....+++++|+++||+++|+.....++|..+
T Consensus 106 ~~ll~~i~~~~~~~a~~~~~~s---~~~lli~r~l~Gi-g-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~ 180 (462)
T PRK15034 106 STAILIIPCVWLGIAVQNPNTP---FGIFIVIALLCGF-A-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQ 180 (462)
T ss_pred HHHHHHHHHHHHHHHHcccCCC---HHHHHHHHHHHHH-H-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHH
Confidence 999988888887765 55 8999999999998 4 4455889999999999999999999996666666544
Q ss_pred --HHHHHH------------------HhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCC
Q 024030 160 --GTLAAR------------------FLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNE 219 (273)
Q Consensus 160 --gp~~~~------------------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (273)
+|.+.+ ..+|+.+..+..++.++..++.++..++.++ ++.
T Consensus 181 ~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~-~~~------------------- 240 (462)
T PRK15034 181 LVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS-SRA------------------- 240 (462)
T ss_pred HHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-ccc-------------------
Confidence 444332 2236666667766666666554555443221 111
Q ss_pred CCCCCccccccccchHHHHHHHHhhcchhHHHHHHHHHhccccccceeeeecc
Q 024030 220 SNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLVY 272 (273)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 272 (273)
+.++.. ...|+|+.|...+.+++....+.++..++|+|
T Consensus 241 --------------~~~~~~-~vlk~~~~Wllslly~~tFG~fvg~s~~lp~~ 278 (462)
T PRK15034 241 --------------SIADQL-PVLQRLHLWLLSLLYLATFGSFIGFSAGFAML 278 (462)
T ss_pred --------------CHHHHH-HHhCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222 26788999999999999988888888888876
No 50
>PRK09952 shikimate transporter; Provisional
Probab=99.85 E-value=1.8e-19 Score=156.04 Aligned_cols=171 Identities=14% Similarity=0.079 Sum_probs=125.2
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHH
Q 024030 7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL 86 (273)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~ 86 (273)
++.....++..++..+.........|.+..+..-++.++. ..........++..++..+++++.|+++||+|||+++..
T Consensus 21 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~ 99 (438)
T PRK09952 21 RRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLML 99 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHHH
Confidence 4445555667777777777666666655544221111111 111122223345667788999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCchhHH--------HHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHH
Q 024030 87 PLTLSIIPLAILAYRRSISFFY--------AYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFV 158 (273)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ 158 (273)
+.++..++..+++++++ ++ .+++.|+++|+ +.+...+...+++.|++|+++|++..+....+..+|..
T Consensus 100 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~R~l~G~-~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~ 175 (438)
T PRK09952 100 TVWMMGIATALIGLLPS---FSTIGWWAPVLLVTLRAIQGF-AVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLL 175 (438)
T ss_pred HHHHHHHHHHHHhcCCc---HHHHHHHHHHHHHHHHHHHHh-hhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 99999999999999888 44 57889999998 56666688899999999999999999999999899888
Q ss_pred HHHHHHHH------------hhhHHHHHHHHHHHHH
Q 024030 159 CGTLAARF------------LSTTSAFQAATIVSML 182 (273)
Q Consensus 159 ~gp~~~~~------------l~~~~~~~~~~~~~~~ 182 (273)
+++.+... .+||.+|.+.++..++
T Consensus 176 l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~ 211 (438)
T PRK09952 176 LSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLI 211 (438)
T ss_pred HHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHH
Confidence 88655432 4899999887665443
No 51
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.84 E-value=9.9e-20 Score=155.92 Aligned_cols=169 Identities=10% Similarity=0.096 Sum_probs=137.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhh
Q 024030 5 KEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAML 84 (273)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~ 84 (273)
++++++..+.+..++..++..+..|.+|.++++. ++.+..+.|++.+.+.++..+++++.|+++||+|||+++
T Consensus 12 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~-------~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l 84 (399)
T PRK05122 12 RLTLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQ-------LGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAV 84 (399)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchH
Confidence 4467778888888999999999999999987552 366778899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcc---C--chhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHH
Q 024030 85 TLPLTLSIIPLAILAYRR---S--ISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVC 159 (273)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~ 159 (273)
..+.+...++...+.+.. + ...++.+++.|++.|+ +.+...+...+++.|..|+++|++++++......+|..+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~ 163 (399)
T PRK05122 85 VFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGI-GESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAI 163 (399)
T ss_pred HHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHh-hHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHH
Confidence 999888777655544321 1 1125678899999998 666666888889999999999999999999999999999
Q ss_pred HHHHHHHh----hhHHHHHHHHHHHH
Q 024030 160 GTLAARFL----STTSAFQAATIVSM 181 (273)
Q Consensus 160 gp~~~~~l----~~~~~~~~~~~~~~ 181 (273)
||.+++.+ +|+..+.+..++.+
T Consensus 164 g~~l~~~l~~~~g~~~~~~~~~~~~~ 189 (399)
T PRK05122 164 GAPLGVLLYHWGGLAGLGLLIMLLAL 189 (399)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 99888776 77877766554443
No 52
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.84 E-value=3e-19 Score=156.84 Aligned_cols=183 Identities=17% Similarity=0.088 Sum_probs=134.4
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHH
Q 024030 7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL 86 (273)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~ 86 (273)
++.+....++.++..+....+....|...++. .++.++ ..+........++..++..++++++|+++||+|||+++..
T Consensus 15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~-~~~~~~-~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~ 92 (490)
T PRK10642 15 RKAITAASLGNAMEWFDFGVYGFVAYALGKVF-FPGADP-SVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAI 92 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 34455556778888888877777777655443 222222 1111111112477889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCchhHH--------HHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHH
Q 024030 87 PLTLSIIPLAILAYRRSISFFY--------AYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFV 158 (273)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ 158 (273)
+.+++.++.++++++++ ++ .+++.|+++|+ +.|...+...++++|++|+++|++..++...+..+|..
T Consensus 93 ~~~l~~i~~~~~a~~~~---~~~~g~~a~~~l~~~R~l~G~-g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~ 168 (490)
T PRK10642 93 TIVIMSISTFCIGLIPS---YATIGIWAPILLLLCKMAQGF-SVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFV 168 (490)
T ss_pred HHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHHHh-HhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 99999999999999888 54 37889999998 55666689999999999999999999999888888877
Q ss_pred HHHHHHH------------HhhhHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 024030 159 CGTLAAR------------FLSTTSAFQAATIVSMLAAAYMRVFLKDDVP 196 (273)
Q Consensus 159 ~gp~~~~------------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (273)
+|+.+.. ..+||++|++.++..++...+ ....||+++
T Consensus 169 lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~-~~~~~esp~ 217 (490)
T PRK10642 169 LGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYL-RHALEETPA 217 (490)
T ss_pred HHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHH-HHcCCCChh
Confidence 7764432 237999999876555443333 455677644
No 53
>PRK12382 putative transporter; Provisional
Probab=99.84 E-value=1.6e-19 Score=154.32 Aligned_cols=163 Identities=15% Similarity=0.078 Sum_probs=130.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhH
Q 024030 6 EIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLT 85 (273)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~ 85 (273)
+++.++...+..++..++.++..|.+|.++++. ++.+..+.|++.+.+.++..+++++.|+++||+|||++++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~-------lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~ 85 (392)
T PRK12382 13 ANFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHD-------LGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSAL 85 (392)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHh-------cCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHH
Confidence 355677777788888888889999999987542 3667788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH---hccC--chhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHH
Q 024030 86 LPLTLSIIPLAILA---YRRS--ISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCG 160 (273)
Q Consensus 86 ~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g 160 (273)
.+.+...++.+.+. ..+. ..+++.+++.|++.|+ +.+...+...+++.|.+|+++|++++++.+...+.|..+|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~-~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g 164 (392)
T PRK12382 86 QGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGF-GESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAG 164 (392)
T ss_pred HHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHH
Confidence 88877665543322 2111 1237888999999998 5566667888899999999999999999999999999999
Q ss_pred HHHHHHh----hhHHHHHHH
Q 024030 161 TLAARFL----STTSAFQAA 176 (273)
Q Consensus 161 p~~~~~l----~~~~~~~~~ 176 (273)
|.+++.+ +|+..+.+.
T Consensus 165 ~~~~~~l~~~~g~~~~~~~~ 184 (392)
T PRK12382 165 APLGLLLHSHFGFAALALTT 184 (392)
T ss_pred HHHHHHHHhccChHHHHHHH
Confidence 9988776 666655444
No 54
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.84 E-value=7.8e-19 Score=154.71 Aligned_cols=180 Identities=14% Similarity=0.148 Sum_probs=137.5
Q ss_pred HHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHH
Q 024030 12 HLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLS 91 (273)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~ 91 (273)
...++.+...+.........|.+-.+.. ..+...+..+.+++.+...++..++.++.|+++||+|||+++.++.++.
T Consensus 20 ~~~~~~~~~g~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~ 96 (502)
T TIGR00887 20 IAGVGFFTDSYDLFCISLVTKMLGYVYY---HGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIM 96 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 3445556666666666666776544321 1122445567789999999999999999999999999999999999988
Q ss_pred HHHHHHHHhccCch---hHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-
Q 024030 92 IIPLAILAYRRSIS---FFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL- 167 (273)
Q Consensus 92 ~~~~~~~~~~~~~~---~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l- 167 (273)
.++..+..+.++.. .++.+++.|++.|+ +.+...+....++.|++|+++|++++++.+....+|..+++.++..+
T Consensus 97 ~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~-~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~ 175 (502)
T TIGR00887 97 IIATVASGLSPGSSPKSVMATLCFWRFWLGV-GIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVL 175 (502)
T ss_pred HHHHHHHHHccCcccchHHHHHHHHHHHHHH-HHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887777654321 15678999999998 66666689999999999999999999999999999998888765432
Q ss_pred --------------------------hhHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 024030 168 --------------------------STTSAFQAATIVSMLAAAYMRVFLKDDVP 196 (273)
Q Consensus 168 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (273)
+||+.+.+.++..++..+. .+++||+++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~-~~~lpESpr 229 (502)
T TIGR00887 176 AGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYF-RLTIPETPR 229 (502)
T ss_pred HHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHH-HHhCCCCHH
Confidence 5999987665554444443 677899876
No 55
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.84 E-value=1.2e-19 Score=163.76 Aligned_cols=163 Identities=16% Similarity=0.164 Sum_probs=132.0
Q ss_pred HHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHh
Q 024030 21 GFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAY 100 (273)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~ 100 (273)
.+....+.+.+|.+..+ ++.+....|++.+++.++.+++++++|+++||+|||++++++.++..++.++..+
T Consensus 180 g~d~~~is~ilp~i~~~--------~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~af 251 (742)
T TIGR01299 180 GVEVFVVGFVLPSAEKD--------LCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSF 251 (742)
T ss_pred HHHHHHHHHHHHHHHHH--------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence 33344556667766544 2556677899999999999999999999999999999999999988888888888
Q ss_pred ccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-------------
Q 024030 101 RRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL------------- 167 (273)
Q Consensus 101 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l------------- 167 (273)
+++ ++.+++.|++.|+ +.+...+...+++.|++|+++|++.+++...+..+|.++++.++..+
T Consensus 252 a~s---~~~llv~R~l~G~-g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~ 327 (742)
T TIGR01299 252 VQG---YGFFLFCRLLSGF-GIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSA 327 (742)
T ss_pred Hhh---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccc
Confidence 877 8999999999998 55656689999999999999999999999999999999888765432
Q ss_pred ----hhHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 024030 168 ----STTSAFQAATIVSMLAAAYMRVFLKDDVP 196 (273)
Q Consensus 168 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (273)
+||+.+++.++..++. ++..+++||+++
T Consensus 328 ~~~~gWR~l~~i~~lp~ll~-ll~~~~lPESPr 359 (742)
T TIGR01299 328 YQFHSWRVFVIVCAFPCVFA-IGALTFMPESPR 359 (742)
T ss_pred cccccHHHHHHHHHHHHHHH-HHHHHHcCCCHH
Confidence 4788777766554444 444677899864
No 56
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=6e-21 Score=155.35 Aligned_cols=180 Identities=22% Similarity=0.284 Sum_probs=154.2
Q ss_pred HHHHHHHHHHHHHHhHHHhHHHHHHhhcC------------------------------------------CCCcchhHH
Q 024030 12 HLFVTVFLWGFATMMVVPAITDVTMMALC------------------------------------------PGLDECSLA 49 (273)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~~~~~~~ 49 (273)
......+..+.....+.|.+|.|+.|..+ ......+..
T Consensus 25 iv~ialllDnmL~~vivPiiP~~L~d~~~~p~~~~~~~~is~~~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~~~~~e 104 (464)
T KOG3764|consen 25 IVSIALLLDNMLYTVIVPIIPGYLYDIQAEPTIIQPFFPISTAPIPPGSMSSFSSLNISTESTNASAGKSPAEAISLDRE 104 (464)
T ss_pred EEehhhhccCccceeeeccCccHHHHhccCCccCccccccccCCCCCccccceecccCCccccccccccCchhccCcccc
Confidence 33556667777788889999999988542 001233445
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHH
Q 024030 50 IYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLA 129 (273)
Q Consensus 50 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 129 (273)
..+.|++++...+.+++.+|+.|.+.||+|+|..+++|...+..+.+++++.++ ++.++++|.++|+ +.++..+..
T Consensus 105 ~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~s---y~~l~vAR~LQgv-gsA~~~tsg 180 (464)
T KOG3764|consen 105 NTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNS---YPMLFVARSLQGV-GSAFADTSG 180 (464)
T ss_pred ccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcch---hHHHHHHHHHhhh-hHHHHHhhh
Confidence 578899999999999999999999999999999999999999999999999999 9999999999999 677777899
Q ss_pred HHHHHhcCChh-hHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 024030 130 LAYVADNISER-QRASAFGILLGVLSASFVCGTLAARFL----STTSAFQAATIVSMLAAAYMRVFLKDDV 195 (273)
Q Consensus 130 ~~~~~~~~~~~-~r~~~~~~~~~~~~~g~~~gp~~~~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (273)
.++++|.+|+| +|++++|+...+.++|..+||.+||.+ |.+.+|.+.+++.++...+..+.+++++
T Consensus 181 lamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~ 251 (464)
T KOG3764|consen 181 LAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTE 251 (464)
T ss_pred HHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccc
Confidence 99999999876 589999999999999999999999998 7799999999999988888666665543
No 57
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.83 E-value=4.4e-19 Score=146.09 Aligned_cols=227 Identities=15% Similarity=0.085 Sum_probs=177.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhH
Q 024030 6 EIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLT 85 (273)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~ 85 (273)
.+|+++...+...+.....++..+..+.+ ++++++|..+.+++.++..+...+..++.|.+.||+|.|++..
T Consensus 12 ~~~~L~~S~~af~v~F~VW~l~s~l~~~i--------~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~ 83 (417)
T COG2223 12 ARRNLWLSTLAFDVGFMVWTLFSPLGVFI--------KSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTI 83 (417)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhh--------ccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHH
Confidence 35566666666656555556666666655 3566899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHH----HHHHH
Q 024030 86 LPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSAS----FVCGT 161 (273)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g----~~~gp 161 (273)
.+.++..+..+...+..+.+++|.+++.+++.|+ +++.+ +...+++++++|+|++|.++|+.. ..|+| ..++|
T Consensus 84 ~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~-~GasF-av~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P 160 (417)
T COG2223 84 LSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGL-AGASF-AVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAP 160 (417)
T ss_pred HHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhc-cccee-hcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHH
Confidence 9999999988888887776657899999999998 44444 789999999999999999999997 66665 56667
Q ss_pred HHHHHhh---hHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchHHHH
Q 024030 162 LAARFLS---TTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDL 238 (273)
Q Consensus 162 ~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (273)
.+....+ |+....+..+..++..+..++..++.+..+... ++.. + ..
T Consensus 161 ~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~------------------------~~~~----~--~~ 210 (417)
T COG2223 161 LVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASV------------------------KPQL----P--AQ 210 (417)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccc------------------------cccc----h--hH
Confidence 7777777 888888888888887777777777655432221 0111 0 22
Q ss_pred HHHHhhcchhHHHHHHHHHhccccccceeeeeccC
Q 024030 239 ICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLVYI 273 (273)
Q Consensus 239 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 273 (273)
++.+.++++.|.+.+.++...-++.++..++|.|+
T Consensus 211 ~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~ 245 (417)
T COG2223 211 LKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYL 245 (417)
T ss_pred HHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33477899999999999999999999988888774
No 58
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=99.83 E-value=5.2e-20 Score=165.15 Aligned_cols=238 Identities=14% Similarity=0.168 Sum_probs=165.8
Q ss_pred HHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHh
Q 024030 21 GFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAY 100 (273)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~ 100 (273)
.+......+.++.+ +.+++++..+.|++.+.+.++..++.++.|++.||+|||+.+.++.++++++.+++++
T Consensus 46 ~~~~g~~~~~l~~i--------ek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~al 117 (633)
T TIGR00805 46 LLYNGLVNSSLTTI--------ERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSL 117 (633)
T ss_pred HHHHHHHHhhchhh--------hhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhC
Confidence 33334444555554 3345677788899999999999999999999999999999999999999999888765
Q ss_pred cc----------------------------C--------------------chhHHHHHHHHHHHhhhchhhHHHHHHHH
Q 024030 101 RR----------------------------S--------------------ISFFYAYYALRTLTAMVCEGSINCLALAY 132 (273)
Q Consensus 101 ~~----------------------------~--------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 132 (273)
.+ + ...+..++++|++.|+ +.+...+...++
T Consensus 118 phf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~Gi-G~~~~~~~~~~~ 196 (633)
T TIGR00805 118 PHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGI-GATPIFPLGISY 196 (633)
T ss_pred hHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhc-cCCcchhcCchh
Confidence 42 0 0124567789999998 666666899999
Q ss_pred HHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh--------------------------hhHHHHHHHHHHHHHHHHH
Q 024030 133 VADNISERQRASAFGILLGVLSASFVCGTLAARFL--------------------------STTSAFQAATIVSMLAAAY 186 (273)
Q Consensus 133 ~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l--------------------------~~~~~~~~~~~~~~~~~~~ 186 (273)
+.|++|+++|++..++.+....+|..+|+++++.+ +||..|++.+++.++..+.
T Consensus 197 i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~ 276 (633)
T TIGR00805 197 IDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIP 276 (633)
T ss_pred hhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988764 1566787777776665554
Q ss_pred HHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchHHHHHHHHhhcchhHHHHHHHHHhccccccce
Q 024030 187 MRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQ 266 (273)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 266 (273)
++.+|++.++..++.+.+..+ ++..+..+ ++..........+..+..+.+++||.++...+..++......++.
T Consensus 277 -l~~~p~~lp~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~ 350 (633)
T TIGR00805 277 -FFFFPKALPKEGKRVNVDVHE---TEKLEKSE--DKSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNGYI 350 (633)
T ss_pred -HHhCccccCCcccccchhhhh---hhcccccc--cccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHH
Confidence 455666543221110000000 00000000 000000001112333445568899999999999999999999999
Q ss_pred eeeeccC
Q 024030 267 ASFLVYI 273 (273)
Q Consensus 267 ~~~~~yl 273 (273)
+++|.|+
T Consensus 351 ~~lP~yl 357 (633)
T TIGR00805 351 TFLPKYL 357 (633)
T ss_pred HHHHHHH
Confidence 9988874
No 59
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=99.82 E-value=5.6e-20 Score=148.91 Aligned_cols=151 Identities=22% Similarity=0.402 Sum_probs=123.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhh
Q 024030 45 ECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGS 124 (273)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 124 (273)
+.+.+....|++-+.+++.+++.++.+|.++||+|||+++.+|++..++...+.+.+.+ +..+.+.|++.|+ ..|.
T Consensus 62 ~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~---F~afv~aR~l~Gi-~kgn 137 (451)
T KOG2615|consen 62 PDGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRN---FAAFVLARFLGGI-FKGN 137 (451)
T ss_pred cccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhh-ccCc
Confidence 33467788999999999999999999999999999999999999999999999999998 8677777999998 7777
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh------HHHHHH-H---HHHHHHHHHHHHHHhcCC
Q 024030 125 INCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLST------TSAFQA-A---TIVSMLAAAYMRVFLKDD 194 (273)
Q Consensus 125 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l~~------~~~~~~-~---~~~~~~~~~~~~~~~~~~ 194 (273)
. ....++++|++++++|+.+++..++..++|.++||.+|+++.. +.+|.. + .++.+.......+++||+
T Consensus 138 l-~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpET 216 (451)
T KOG2615|consen 138 L-SVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPET 216 (451)
T ss_pred h-HHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 7 7999999999999999999999999999999999999999844 122222 1 112222133445678998
Q ss_pred CCCCCC
Q 024030 195 VPNDDD 200 (273)
Q Consensus 195 ~~~~~~ 200 (273)
-+.+++
T Consensus 217 L~~rk~ 222 (451)
T KOG2615|consen 217 LPLRKR 222 (451)
T ss_pred ccchhh
Confidence 665554
No 60
>PRK15075 citrate-proton symporter; Provisional
Probab=99.82 E-value=1.7e-18 Score=149.99 Aligned_cols=168 Identities=14% Similarity=0.083 Sum_probs=125.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhh
Q 024030 5 KEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAML 84 (273)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~ 84 (273)
.|++.....++..++..+....+.+..|.+.+|. +.++.+.+. ....-.......+...+++++.|+++||+|||+++
T Consensus 12 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~-~~~~~~~~~-~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l 89 (434)
T PRK15075 12 SKARAILRVTSGNFLEMFDFFLFGFYATAIAKTF-FPAGNEFAS-LMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGL 89 (434)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCCchHH-HHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHH
Confidence 4455666678888899999999999999887764 222222110 00011122233444467889999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCchhHH--------HHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHH
Q 024030 85 TLPLTLSIIPLAILAYRRSISFFY--------AYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSAS 156 (273)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g 156 (273)
+.+..+..++..+++++++ ++ .+++.|++.|+ +.+...+....+++|++|+++|++++++.....++|
T Consensus 90 ~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~l~~~R~l~G~-~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g 165 (434)
T PRK15075 90 IVTLSIMASGTLLIAFVPG---YATIGLAAPLLVLLGRLLQGF-SAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVA 165 (434)
T ss_pred HHHHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHHHHHHhhc-cccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHH
Confidence 9999999999999998887 44 46889999998 556556788899999999999999999998888887
Q ss_pred HHHHHHHHHH------------hhhHHHHHHHHH
Q 024030 157 FVCGTLAARF------------LSTTSAFQAATI 178 (273)
Q Consensus 157 ~~~gp~~~~~------------l~~~~~~~~~~~ 178 (273)
..+++.+++. .+||++|++...
T Consensus 166 ~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~ 199 (434)
T PRK15075 166 VVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL 199 (434)
T ss_pred HHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence 7777666554 378999987543
No 61
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.81 E-value=1.9e-18 Score=151.48 Aligned_cols=184 Identities=16% Similarity=0.182 Sum_probs=141.8
Q ss_pred HHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHH
Q 024030 11 SHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTL 90 (273)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~ 90 (273)
....++.+...+....+.+..|.+.++.......+.+.+..+.|++.+.+.++..++++++|+++||+|||+++.++.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l 94 (479)
T PRK10077 15 LVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVL 94 (479)
T ss_pred HHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 33344555555566666777777655543333344577788899999999999999999999999999999999999988
Q ss_pred HHHHHHHHHhc---------cCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHH
Q 024030 91 SIIPLAILAYR---------RSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGT 161 (273)
Q Consensus 91 ~~~~~~~~~~~---------~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp 161 (273)
..++....++. ++....+.+++.|++.|+ +.|...+...++++|++|+++|++++++.+....+|..+++
T Consensus 95 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~-~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~ 173 (479)
T PRK10077 95 FFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGI-GVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVY 173 (479)
T ss_pred HHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhh-hHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHH
Confidence 88877666542 122224667899999998 66666689999999999999999999999999999999888
Q ss_pred HHHHH------------hhhHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 024030 162 LAARF------------LSTTSAFQAATIVSMLAAAYMRVFLKDDVP 196 (273)
Q Consensus 162 ~~~~~------------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (273)
.+++. .+||++|.+.++..++..+. .+++||+++
T Consensus 174 ~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~-~~~l~~s~~ 219 (479)
T PRK10077 174 FVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLML-LYFVPETPR 219 (479)
T ss_pred HHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHH-HHcCCCCcH
Confidence 76543 27999999887766665444 566888754
No 62
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.81 E-value=6.1e-18 Score=147.99 Aligned_cols=231 Identities=16% Similarity=0.175 Sum_probs=175.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhH
Q 024030 6 EIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLT 85 (273)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~ 85 (273)
++|.+..++...++..++..+....++.+..+. +-|+...|++.....+..++.++++|.++||++||++++
T Consensus 8 r~~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~l--------t~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili 79 (524)
T PF05977_consen 8 RNRNFRRLWIAQLISNLGDWMQTVALAWLVTQL--------TGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILI 79 (524)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHH
Confidence 456778888999999999999998888887654 556778899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh--ccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 024030 86 LPLTLSIIPLAILAY--RRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLA 163 (273)
Q Consensus 86 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~ 163 (273)
.+-++..+....+.+ ..+..+.|.+++..++.|+ +.+...|+.++.+.|++|+++..+++++.+...+++..+||.+
T Consensus 80 ~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~-~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPal 158 (524)
T PF05977_consen 80 LSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGI-GSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPAL 158 (524)
T ss_pred HHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchH
Confidence 887766554433332 2222237888889999998 7788889999999999999999999999999999999999999
Q ss_pred HHHh----hhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchHHHHH
Q 024030 164 ARFL----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLI 239 (273)
Q Consensus 164 ~~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (273)
+|.+ |..+.|.+.++..++.... ....+++.++++. +.++..++.++.+
T Consensus 159 gG~Lva~~G~~~~f~inalsfl~~i~~-l~~~~~~~~~~~~--------------------------~~e~~~~~l~~G~ 211 (524)
T PF05977_consen 159 GGILVAFFGAAAAFLINALSFLISILA-LLRWKPPPPPSSL--------------------------PRERFFSALREGL 211 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcccccccccc--------------------------chhhhhhhHHHHH
Confidence 9987 5567777766554444333 3333322111111 1122234677888
Q ss_pred HHHhhcchhHHHHHHHHHhccccccceeeeecc
Q 024030 240 CLLRSSVTLSQAAVVAFFSGLSEGGMQASFLVY 272 (273)
Q Consensus 240 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 272 (273)
+.++++|.++..++..+++++....+...+|+|
T Consensus 212 ryv~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~ 244 (524)
T PF05977_consen 212 RYVRSSPPLRSVLLRSFLFNLFASAVWALLPLF 244 (524)
T ss_pred HHHhcchHHHHHHHHHHHHHHhhhHHHHhhhHH
Confidence 889999999888887777777666666666654
No 63
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=99.81 E-value=3.4e-18 Score=149.31 Aligned_cols=172 Identities=12% Similarity=0.049 Sum_probs=145.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhh-hCCchh
Q 024030 5 KEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQ-YGRKAM 83 (273)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~grr~~ 83 (273)
++++.++.++...++..++++...+.+|.|+++. ..++.+..+.|.+.+.+.++..++++++|+++|| +|||++
T Consensus 7 ~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~-----~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~ 81 (475)
T TIGR00924 7 GHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQ-----AGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKT 81 (475)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHH
Confidence 3456777788888888999999999999998652 1246777889999999999999999999999999 899999
Q ss_pred hHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhh---HHHHHHHHHHHHHHHHHHH
Q 024030 84 LTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQ---RASAFGILLGVLSASFVCG 160 (273)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~~~~g~~~g 160 (273)
+.++.++..++..++.+.++ .+.+.+.+.+.|+ +.|...+...++++|.+|+++ |+++.++.+...++|..+|
T Consensus 82 l~~~~~~~~~g~~~~~~~~~---~~~~~~~~~l~g~-g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig 157 (475)
T TIGR00924 82 MVLGGIVLMLGHFMLAMSIY---PDLIFYGLGTIAV-GSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFIS 157 (475)
T ss_pred HHHHHHHHHHHHHHHHhccc---HhHHHHHHHHHHh-ccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHH
Confidence 99999999999888888776 6778888999998 666666889999999998754 8889999999999999999
Q ss_pred HHHHHHh----hhHHHHHHHHHHHHHHHH
Q 024030 161 TLAARFL----STTSAFQAATIVSMLAAA 185 (273)
Q Consensus 161 p~~~~~l----~~~~~~~~~~~~~~~~~~ 185 (273)
|.+++.+ +|++.|.+.++..++..+
T Consensus 158 ~~l~g~l~~~~g~~~~f~~~~~~~~~~~l 186 (475)
T TIGR00924 158 PLLAGVIAENYGYHVGFNLAAVGMVIGLL 186 (475)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 9998876 789999887755544433
No 64
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.80 E-value=7.1e-18 Score=146.77 Aligned_cols=214 Identities=9% Similarity=0.013 Sum_probs=142.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccCchhHHHHHH-HHHHHhhhchh
Q 024030 45 ECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYA-LRTLTAMVCEG 123 (273)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g~~~~~ 123 (273)
+++.+....+++.+.+.+...++.++.|+++||+|||++++.+.++..++.+++++.++ ++.+++ .|++.|+ +.+
T Consensus 48 ~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~l~G~-~~~ 123 (455)
T TIGR00892 48 IFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSN---VIELYLTAGFITGL-GLA 123 (455)
T ss_pred HhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHh-cch
Confidence 34666777889999999999999999999999999999999999888888888888777 666654 5688888 445
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 024030 124 SINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDD 199 (273)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (273)
...+...+.+.++++ ++|+++.++.+.+..+|..++|.+++.+ +||++|++.+++.++..+..++..++.+.++.
T Consensus 124 ~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~~~ 202 (455)
T TIGR00892 124 FNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALMRPVGPSQRV 202 (455)
T ss_pred hhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCCCCccccc
Confidence 444566778889886 7899999999999999999998887765 89999999988776655543333332221111
Q ss_pred CCCCCCCCCCCCCcccccCCCCCCCccccccccchHHHHH-HHHhhcchhHHHHHHHHHhccccccceeeeecc
Q 024030 200 DDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLI-CLLRSSVTLSQAAVVAFFSGLSEGGMQASFLVY 272 (273)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 272 (273)
.+++.++. .+++....+.......+...+.. ..++++|.++...+..++..++.....+++|.|
T Consensus 203 ~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~ 267 (455)
T TIGR00892 203 SKSKSKEG---------LPPDGSTKKLSKKSTAEKINRFLDFSLFTHRGFLVYLSGNVIMFLGFFAPIIFLVPY 267 (455)
T ss_pred cccccccc---------CCCCCccccccccchhhhhhhhcchHHhcCchHHHHHHHHHHHHHHccchHHHHHHH
Confidence 00000000 00000000000000000111110 125678999988888888877777777666655
No 65
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.80 E-value=3.7e-18 Score=164.14 Aligned_cols=236 Identities=16% Similarity=0.145 Sum_probs=154.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhH
Q 024030 6 EIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLT 85 (273)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~ 85 (273)
+.+.+..+++..++..++.......+..++.... +...+....+++.+++.++..++++++|+++||+|||++++
T Consensus 7 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~ 81 (1146)
T PRK08633 7 KIIGFLPLLLTQFLNAFNDLGHKILIQNTLIKAY-----DGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIR 81 (1146)
T ss_pred hhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHc-----CcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHH
Confidence 3455666666666655555444333433333321 11234456789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH---hccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHH
Q 024030 86 LPLTLSIIPLAILA---YRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTL 162 (273)
Q Consensus 86 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~ 162 (273)
.+.++.++..++.. ...+ ++.+++.|++.|+ +.+...++..++++|++|+++|++++|+...+.++|.++||.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~---~~~l~~~r~l~G~-~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~ 157 (1146)
T PRK08633 82 IVKLFEVGLTLLIVLAYYLGW---FWLAFAVTFLLGA-QSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTA 157 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHH-HHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHH
Confidence 88776555544433 3345 8899999999998 677777899999999999999999999999999999999999
Q ss_pred HHHHhh-h------------HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccc
Q 024030 163 AARFLS-T------------TSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVC 229 (273)
Q Consensus 163 ~~~~l~-~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (273)
+++.+. + ++.+.+..+...+..++..+.+|+.+......+ + +...
T Consensus 158 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~----~~~~ 215 (1146)
T PRK08633 158 LFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPAAAPEVF------------------D----KKKY 215 (1146)
T ss_pred HHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCCCCcccc------------------c----cccc
Confidence 988772 1 222323222222222333444565433222100 0 0000
Q ss_pred cccchHHHHHHHHhhcchhHHHHHHHHHhccccccceeeeecc
Q 024030 230 KKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLVY 272 (273)
Q Consensus 230 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 272 (273)
.......+.++.++++|.++...+..++..........++|.|
T Consensus 216 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (1146)
T PRK08633 216 LFPKLLWRNLKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAY 258 (1146)
T ss_pred ccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 1111334445567888988887777777666665556666554
No 66
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.80 E-value=4e-18 Score=163.77 Aligned_cols=236 Identities=12% Similarity=0.070 Sum_probs=156.4
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHH
Q 024030 7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL 86 (273)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~ 86 (273)
.+.+..++...++..++.++....++.+...... .+.........++..+++.+...++++++|+++||+|||+++..
T Consensus 10 ~~~f~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~ 87 (1140)
T PRK06814 10 SRRFAPLFWTQFFGAFNDNFLKNALVILILYGLS--GALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKI 87 (1140)
T ss_pred ccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhc--cccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHH
Confidence 3445555666666666655443333322211110 11112233457888889999999999999999999999997643
Q ss_pred HH---HHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 024030 87 PL---TLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLA 163 (273)
Q Consensus 87 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~ 163 (273)
.. +...+........++ ++.+++.|+++|+ +.+...++..+++.+++|+++|++++|+.+++.++|.++||.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~s---~~~l~~~~~l~gi-~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l 163 (1140)
T PRK06814 88 LKFAEIGIAALAIYGFHLNS---VPLLFAALFLMGI-HSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTII 163 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHH-HHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHH
Confidence 22 222222222223355 8999999999998 6677779999999999999999999999999999999999999
Q ss_pred HHHh----hhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchHHHHH
Q 024030 164 ARFL----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLI 239 (273)
Q Consensus 164 ~~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (273)
++++ +|++.|....+..++ .++..+.+|+++..++.. +.......+..+.+
T Consensus 164 ~g~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~ 218 (1140)
T PRK06814 164 GGLATISGNFVILVALLMGIAVL-GWLASLFIPKTGNAAPDL------------------------KIDRNIIRSTITLL 218 (1140)
T ss_pred HHHHHhccccHHHHHHHHHHHHH-HHHHHhhCCCCCCCCCCC------------------------eeccchHHHHHHHH
Confidence 9987 777777433333333 333355566543322210 00001111333456
Q ss_pred HHHhhcchhHHHHHHHHHhccccccceeeeeccC
Q 024030 240 CLLRSSVTLSQAAVVAFFSGLSEGGMQASFLVYI 273 (273)
Q Consensus 240 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 273 (273)
+.++++|.++...+..++.++....+.+++|.|+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 252 (1140)
T PRK06814 219 KYAKADKRIWLAILGISWFWLVGAVVLSQLPLLA 252 (1140)
T ss_pred HHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 6688999999999988888888777777888763
No 67
>TIGR00898 2A0119 cation transport protein.
Probab=99.80 E-value=2.9e-19 Score=157.60 Aligned_cols=148 Identities=22% Similarity=0.283 Sum_probs=129.6
Q ss_pred cchhHH---HHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhh
Q 024030 44 DECSLA---IYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMV 120 (273)
Q Consensus 44 ~~~~~~---~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~ 120 (273)
.+++.+ ..+.|+..+++.++.++++++.|+++||+|||++++++.++..++.++..++++ ++.+++.|++.|+
T Consensus 117 ~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~r~l~G~- 192 (505)
T TIGR00898 117 TEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPN---YTVFLVFRLLVGM- 192 (505)
T ss_pred EEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHccc---HHHHHHHHHHHHh-
Confidence 445666 778899999999999999999999999999999999999999998888888888 8999999999998
Q ss_pred chhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 024030 121 CEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL-STTSAFQAATIVSMLAAAYMRVFLKDDVP 196 (273)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (273)
+.+...+...+++.|++|+++|+++.++...+..+|.+++|.++..+ +||+.+++.++..++..+. .+++||+++
T Consensus 193 ~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~-~~~~~esp~ 268 (505)
T TIGR00898 193 GIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWLQLAVSLPTFLFFLL-SWFVPESPR 268 (505)
T ss_pred hccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-HHhcCCChH
Confidence 55665689999999999999999999999999999999999988776 7999999888777666555 467888754
No 68
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.80 E-value=1.5e-17 Score=142.68 Aligned_cols=210 Identities=13% Similarity=0.119 Sum_probs=150.6
Q ss_pred HHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhh-----CCch-hhHHH
Q 024030 14 FVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQY-----GRKA-MLTLP 87 (273)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----grr~-~~~~~ 87 (273)
+...+.+.+........+|.|+++. +.+..+.|++...... .+..+++|+++||+ |||| .+..+
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~l~~~--------g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~ 74 (402)
T PRK11902 5 LLLGFASGLPLALTSGTLQAWMTVE--------GLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLT 74 (402)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHc--------CCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHH
Confidence 3445566777788889999999774 6777888888666554 68999999999999 8876 57777
Q ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024030 88 LTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL 167 (273)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l 167 (273)
.+..+++...+.+.+....++.+++..++.++ ..+...+...+++.|++|+++|+++.++...+.++|..+++.+++.+
T Consensus 75 ~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l 153 (402)
T PRK11902 75 QVGLAASIAAMAFCPPHAALWPLAGLAVLVAF-LSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWL 153 (402)
T ss_pred HHHHHHHHHHHHhcCccchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 77777777776766443336767777777775 56667789999999999999999999999999999999988766553
Q ss_pred -----hhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchHHHHHHHH
Q 024030 168 -----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLL 242 (273)
Q Consensus 168 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 242 (273)
+||..|++.+++.++..+. .+..||++++++++ ++. .++.++.++.+
T Consensus 154 ~~~~~gw~~~f~i~a~~~l~~~l~-~~~~~e~~~~~~~~------------------------~~~---~~~~~~~~~~l 205 (402)
T PRK11902 154 ADRVLGWGNTYLLMAGLMLAGALT-TLWAPEPEVPARPP------------------------RSL---GEAVVGPLRDF 205 (402)
T ss_pred HhcccCHHHHHHHHHHHHHHHHHH-HHhcCCCccccccc------------------------chh---HHHHHHHHHHH
Confidence 7999999888776655443 44566643321110 000 00223344557
Q ss_pred hhcchhHHHHHHHHHhcccc
Q 024030 243 RSSVTLSQAAVVAFFSGLSE 262 (273)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~ 262 (273)
+|||.++..++..+++....
T Consensus 206 ~~~~~~~~~l~~~~l~~~~~ 225 (402)
T PRK11902 206 FSRRGAWALLLLIVLYKLGD 225 (402)
T ss_pred HhCcCHHHHHHHHHHHHhHH
Confidence 88999888777766665543
No 69
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.80 E-value=6e-18 Score=142.73 Aligned_cols=211 Identities=13% Similarity=0.071 Sum_probs=146.5
Q ss_pred HhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhh-----CCchhh-HHHHHHHHHHHHHH
Q 024030 25 MMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQY-----GRKAML-TLPLTLSIIPLAIL 98 (273)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----grr~~~-~~~~~~~~~~~~~~ 98 (273)
....+.+|.+.+|. +.+..+.|+..+. .+...+ .+++|+++||+ ||||.+ +.+.+...+.....
T Consensus 5 ~~~~~~~~~~~~~~--------g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l 74 (356)
T TIGR00901 5 GLVGNTLPYWLRSK--------NVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLIL 74 (356)
T ss_pred hhHHhHHHHHHHHc--------CCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHH
Confidence 44567788887664 6666777877554 444444 89999999998 899875 56666666666666
Q ss_pred HhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh----h------
Q 024030 99 AYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----S------ 168 (273)
Q Consensus 99 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l----~------ 168 (273)
.+.++....+.+....++.++ ..+...++..++++|++|+|+|+++.++...+.++|..+++.+++.+ +
T Consensus 75 ~~~~~~~~l~~l~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~ 153 (356)
T TIGR00901 75 SFLVPSTDLPLLAGLAFLIAF-FSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLI 153 (356)
T ss_pred HcCCcchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc
Confidence 666443346667777777776 55666789999999999999999999999999999999999888765 6
Q ss_pred --hHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchHHHHHHHHhhcc
Q 024030 169 --TTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSV 246 (273)
Q Consensus 169 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 246 (273)
||.+|.+.++..++..+...+..||+.++++. . ++ ..++.++.++.++++|
T Consensus 154 ~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~~~~~-----------------------~-~~---~~~~~~~~~~~~~~~~ 206 (356)
T TIGR00901 154 TLWGYIFFWTALLILPGLLVTLFLAKEPQEDASV-----------------------P-KP---LTQAVLKPIREFFQRK 206 (356)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhccCCCccccc-----------------------c-hh---HHHHHHHHHHHHHHhc
Confidence 99999888877666555534445553221110 0 00 0012233444566666
Q ss_pred h---hHHHHHHHHHhccccccceeeeeccC
Q 024030 247 T---LSQAAVVAFFSGLSEGGMQASFLVYI 273 (273)
Q Consensus 247 ~---~~~~~~~~~~~~~~~~~~~~~~~~yl 273 (273)
. ++...+..+++..++...++++|.|+
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 236 (356)
T TIGR00901 207 NMIQALLLLLLIVLYKLGDSAATVLTTLFL 236 (356)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 77777777777888877777777663
No 70
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.80 E-value=2.9e-18 Score=146.75 Aligned_cols=176 Identities=13% Similarity=0.074 Sum_probs=125.7
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHH
Q 024030 8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP 87 (273)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~ 87 (273)
|.++......++...+.....|++|.|+++. .+.+..+.|++.+...++..+++++.|+++||+|||+.++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~ 74 (396)
T TIGR00882 2 TNFWMFGLFFFLYFFIMSAYFPFFPIWLHDV-------NGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWI 74 (396)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 4566667777788888889999999998663 356677889999999999999999999999999999999877
Q ss_pred HHHHHHHHHHH---HhccC--chhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHH
Q 024030 88 LTLSIIPLAIL---AYRRS--ISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTL 162 (273)
Q Consensus 88 ~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~ 162 (273)
.....+..... ...+. ....+..++.+++.|+ +.+...+...++..|..+ ++++..|......++|..+||.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~ 151 (396)
T TIGR00882 75 ISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGF-VFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCAS 151 (396)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-HhccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHH
Confidence 66555433322 11111 0112334556777776 444445666677666533 3345667778888999999999
Q ss_pred HHHHh---hhHHHHHHHHHHHHHHHHHHHHHhcC
Q 024030 163 AARFL---STTSAFQAATIVSMLAAAYMRVFLKD 193 (273)
Q Consensus 163 ~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (273)
+++.+ +|+.+|++.+++.++..++.....||
T Consensus 152 ~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 185 (396)
T TIGR00882 152 IAGILFSIDPQIVFWLGSGFALILMLLLMFAKPK 185 (396)
T ss_pred HHhhhhccCchHHHHHHHHHHHHHHHHHHHhCCC
Confidence 98876 88999988877777665553433343
No 71
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.79 E-value=5.7e-19 Score=154.04 Aligned_cols=172 Identities=16% Similarity=0.107 Sum_probs=133.1
Q ss_pred HHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhc
Q 024030 22 FATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYR 101 (273)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~ 101 (273)
.......+.+|....+.--..+.+.+.+..+.|++.+++.++..+++++.|+++||+|||+++..+.++..++..+....
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~ 121 (481)
T TIGR00879 42 YDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLA 121 (481)
T ss_pred cccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 33444555666555442111122234557788999999999999999999999999999999999999888888877655
Q ss_pred cCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHH---HH----hhhHHHHH
Q 024030 102 RSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAA---RF----LSTTSAFQ 174 (273)
Q Consensus 102 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~---~~----l~~~~~~~ 174 (273)
.+...++.+++.|++.|+ +.+...+...+++.|++|+++|++++++.+.+..+|..++|.++ .. .+||+.|.
T Consensus 122 ~~~~~~~~~~~~r~l~G~-~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~ 200 (481)
T TIGR00879 122 AFALSVEMLIVGRVLLGI-GVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLG 200 (481)
T ss_pred ccccchHHHHHHHHHHHh-hhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHH
Confidence 543336789999999998 66666688999999999999999999999999999999999988 43 38999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCC
Q 024030 175 AATIVSMLAAAYMRVFLKDDV 195 (273)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~ 195 (273)
+.++..++..+ ..+++||++
T Consensus 201 ~~~~~~~~~~~-~~~~l~~~~ 220 (481)
T TIGR00879 201 LQLIPAGLLFL-GLFFLPESP 220 (481)
T ss_pred HHHHHHHHHHH-HHhcCCCCh
Confidence 86555444433 356677764
No 72
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.79 E-value=3.5e-17 Score=143.53 Aligned_cols=177 Identities=15% Similarity=0.193 Sum_probs=131.5
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhh-----CCc
Q 024030 7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQY-----GRK 81 (273)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----grr 81 (273)
+|+...++...+..........+.+|.++++. +.+..+.|.. +...... ++.+++|+++||+ |||
T Consensus 11 ~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~~--------g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grr 80 (491)
T PRK11010 11 QPNSAILLILGFASGLPLALTSGTLQAWMTVE--------NIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRR 80 (491)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCc
Confidence 34555666677778888888999999998764 3444455554 2222232 6889999999999 999
Q ss_pred hh-hHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHH
Q 024030 82 AM-LTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCG 160 (273)
Q Consensus 82 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g 160 (273)
+. +..+.+..+++...+++.++..+++.+.+.+++.++ +.+...+...++..|++|+++|+++.++...+..+|..++
T Consensus 81 r~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~-~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg 159 (491)
T PRK11010 81 RGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAF-CSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVS 159 (491)
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHH
Confidence 86 556667776776666665443347788888999997 5566668899999999999999999999999999999998
Q ss_pred HHHHHHh-----hhHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 024030 161 TLAARFL-----STTSAFQAATIVSMLAAAYMRVFLKDDV 195 (273)
Q Consensus 161 p~~~~~l-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (273)
+.++..+ +||..|++.++..++..+. .+..||++
T Consensus 160 ~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~-~~~~~e~~ 198 (491)
T PRK11010 160 GGLALWLADRYLGWQGMYWLMAALLIPCIIA-TLLAPEPT 198 (491)
T ss_pred HHHHHHHHhcccCHHHHHHHHHHHHHHHHHH-HHhcCCCc
Confidence 8666543 7999999988776665444 33466643
No 73
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=99.79 E-value=8.2e-18 Score=147.07 Aligned_cols=169 Identities=10% Similarity=0.073 Sum_probs=138.2
Q ss_pred CCchhhhhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhh-hC
Q 024030 1 MGMEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQ-YG 79 (273)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g 79 (273)
|++++++|.++.++...+...++++...++++.|+++.. +.+....+++.+.+.....+..+++|+++|| +|
T Consensus 7 ~~~~~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~l-------g~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G 79 (489)
T PRK10207 7 MGLLQQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQL-------GFSQEQAFITFGAFAALVYGLISIGGYVGDHLLG 79 (489)
T ss_pred cchhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------CCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccc
Confidence 444556677888888888889999999999999997643 4455566777888888888888999999999 99
Q ss_pred CchhhHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChh--hHHHHHHHHHHHHHHHH
Q 024030 80 RKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISER--QRASAFGILLGVLSASF 157 (273)
Q Consensus 80 rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~g~ 157 (273)
|||++..+.+++.++.+.+.+..+. ...+++.|.++|+ +.|...+...+++.|.+|++ +|+++.++.+...++|.
T Consensus 80 ~r~~~~~g~~~~~~g~~~~~~~~~~--~~ll~~~~~l~~i-g~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~ 156 (489)
T PRK10207 80 TKRTIVLGAIVLAIGYFMTGMSLLK--PDLIFIALGTIAV-GNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGS 156 (489)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccc--hhHHHHHHHHHHh-ccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHH
Confidence 9999999999999999888876541 2235578999998 66767688899999999877 45778999999999999
Q ss_pred HHHHHHHHHh----hhHHHHHHHHHH
Q 024030 158 VCGTLAARFL----STTSAFQAATIV 179 (273)
Q Consensus 158 ~~gp~~~~~l----~~~~~~~~~~~~ 179 (273)
.+||.+++++ +||+.|++.++.
T Consensus 157 ~~g~~l~g~l~~~~gw~~~F~i~~i~ 182 (489)
T PRK10207 157 LISLSLAPVIADKFGYSVTYNLCGAG 182 (489)
T ss_pred HHHHHHHHHHHHhhChHHHHHHHHHH
Confidence 9998888876 899999886543
No 74
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.79 E-value=1.4e-17 Score=141.86 Aligned_cols=220 Identities=13% Similarity=0.013 Sum_probs=150.2
Q ss_pred HHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHH-H
Q 024030 11 SHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL-T 89 (273)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~-~ 89 (273)
..+....+....+.....|++|.|+++. +.+..+.|++.+.+.+...++++++|.++||+|||+...... .
T Consensus 7 ~~l~~~~~~~~~~~~~~~p~l~~~l~~~--------g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~ 78 (382)
T TIGR00902 7 RWLALGFFGYFCAYGIFLPFFPAWLKGI--------GLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLAL 78 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 3455667777777888999999998764 677789999999999999999999999999999854332111 1
Q ss_pred HHHHHHH-HHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-
Q 024030 90 LSIIPLA-ILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL- 167 (273)
Q Consensus 90 ~~~~~~~-~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l- 167 (273)
...+... .....++ ++.+++.|.+.+.+. +...+...++..+. +++|+++.|......++|..++|.+++.+
T Consensus 79 ~~~l~~~~~~~~~~~---~~~l~~~~~l~~~~~-~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~ 152 (382)
T TIGR00902 79 ASAIFAAAFSAGAHN---AWLLFIAIGLFALFF-SAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLI 152 (382)
T ss_pred HHHHHHHHHHHhhhh---HHHHHHHHHHHHHHH-ccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 1111112 2234455 888889999888744 44457788887664 57889999999999999999999988877
Q ss_pred ---hhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchHHHHHHHHhh
Q 024030 168 ---STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRS 244 (273)
Q Consensus 168 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 244 (273)
+|+..|.+.....++. ++ .+..+|+.++++++ ++ ++ .+..++ .+.+.|
T Consensus 153 ~~~g~~~~f~~~~~~~~~~-~~-~~~~~~~~~~~~~~-------------------~~---~~-~~~~~~----~~~~l~ 203 (382)
T TIGR00902 153 GMFDEQNILAILTAGLAFM-LI-GFLIKPTIPPKDAI-------------------PE---DE-SQGDSA----FIALLK 203 (382)
T ss_pred HHcChhHHHHHHHHHHHHH-HH-HHHcCCCCCCCccc-------------------cc---cc-cccchh----HHHHHc
Confidence 8888887765442222 22 23334332111110 00 00 000011 223678
Q ss_pred cchhHHHHHHHHHhccccccceeeeeccC
Q 024030 245 SVTLSQAAVVAFFSGLSEGGMQASFLVYI 273 (273)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 273 (273)
||+++...+..++...+....+++.|.|+
T Consensus 204 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~l 232 (382)
T TIGR00902 204 NPMNLRFLAAVCLIQGAHAAYYGFSAIYW 232 (382)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999998888888888877763
No 75
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.78 E-value=9.8e-18 Score=142.82 Aligned_cols=212 Identities=14% Similarity=0.033 Sum_probs=143.5
Q ss_pred HHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCc----hhhHHHHHHH
Q 024030 16 TVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRK----AMLTLPLTLS 91 (273)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr----~~~~~~~~~~ 91 (273)
..+....+.+...|++|.|++|. +.+..+.|++.+++.+...++++++|+++||+||| +.+.++...
T Consensus 12 ~~~~~~~~~g~~~p~l~~~l~~~--------g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~- 82 (382)
T PRK11128 12 SYFGYFFAYGVFLPFWSVWLKGQ--------GYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLL- 82 (382)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhc--------CCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHH-
Confidence 34555577788999999998764 66778899999999999999999999999999994 222222211
Q ss_pred HHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh----
Q 024030 92 IIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL---- 167 (273)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l---- 167 (273)
.........++ +|.+++.|++.|+ +.+...+...++..++ +++|+++.+......++|..+||.+++.+
T Consensus 83 -~~~~~~~~~~~---~~~l~i~~~l~g~-~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~ 155 (382)
T PRK11128 83 -FAVAFWFGAHS---FWLLFVAIGLFNL-FFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWF 155 (382)
T ss_pred -HHHHHHHhccc---HHHHHHHHHHHHH-HHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHc
Confidence 11122223355 8888899999997 4555557777777776 45688888889888899999999999876
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchHHHHHHHHhhcch
Q 024030 168 STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVT 247 (273)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 247 (273)
+||..|++.++..++..+. .+..||++++++++ ++..+..++ .+.++|+|.
T Consensus 156 g~~~~f~~~~~~~~~~~~~-~~~~~~~~~~~~~~------------------------~~~~~~~~~----~~~i~~~~~ 206 (382)
T PRK11128 156 GEQAILWILTAGVASMLLG-QLLRPTIMPQGESR------------------------QQESAGWPA----WKALLKEPT 206 (382)
T ss_pred ChhHHHHHHHHHHHHHHHH-HHccCCCCCccccc------------------------cccccccch----HHHHHcChh
Confidence 8898888776544433332 33334322111100 000000112 234778899
Q ss_pred hHHHHHHHHHhccccccceeeeecc
Q 024030 248 LSQAAVVAFFSGLSEGGMQASFLVY 272 (273)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~y 272 (273)
++...+..++.+..+...++++|.|
T Consensus 207 ~~~~~~~~~l~~~~~~~~~~~~~~~ 231 (382)
T PRK11128 207 VWRFLLCVSLLQGSHAAYYGFSAIY 231 (382)
T ss_pred HHHHHHHHHHHHHHhHhHHHHHHHH
Confidence 9988888888777776666666655
No 76
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.78 E-value=6e-17 Score=142.58 Aligned_cols=160 Identities=16% Similarity=0.233 Sum_probs=136.0
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHH
Q 024030 7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL 86 (273)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~ 86 (273)
++.+..+++..++..+......+.+|.+.++. +.+..+.+++.+.+.++..++.++.|+++||+|||+.+..
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--------~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~ 90 (496)
T PRK03893 19 WKAFSAAWLGYLLDGFDFVLITLVLTEVQGEF--------GLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVI 90 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 34555667777777788888888888876543 6667788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024030 87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF 166 (273)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~ 166 (273)
+.+...++..++.+.++ ++.+++.|++.|+ +.+...+...+++.|.+|+++|++++++.....++|..++|.+++.
T Consensus 91 ~~~~~~~~~~~~~~~~~---~~~l~~~~~l~G~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~ 166 (496)
T PRK03893 91 SIVLFSVGTLACGFAPG---YWTLFIARLVIGM-GMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSL 166 (496)
T ss_pred HHHHHHHHHHHHHHHhH---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888888888877 8899999999998 5555668889999999999999999999999999999999988877
Q ss_pred h----hhHHHHHHHHH
Q 024030 167 L----STTSAFQAATI 178 (273)
Q Consensus 167 l----~~~~~~~~~~~ 178 (273)
+ +|++.|.+..+
T Consensus 167 l~~~~~w~~~f~~~~~ 182 (496)
T PRK03893 167 VVPVWGWRALFFIGIL 182 (496)
T ss_pred HhccCCHHHHHHHHHH
Confidence 6 78988876433
No 77
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.78 E-value=3.8e-18 Score=143.92 Aligned_cols=203 Identities=14% Similarity=0.062 Sum_probs=142.9
Q ss_pred HHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhcc
Q 024030 23 ATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRR 102 (273)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~ 102 (273)
+.....|.+|.+.++. +.+..+.|++.+.+.++..+++++.|+++||+|||+++..+.+...++.... ..+
T Consensus 15 ~~~~~~~~lp~l~~~~--------~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~ 85 (355)
T TIGR00896 15 ALTSVGPLLPQIRSAL--------GMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAP 85 (355)
T ss_pred ccccCcccHHHHHHHh--------CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hhc
Confidence 3345678888886553 6677889999999999999999999999999999999999888877776665 555
Q ss_pred CchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh------hhHHHHHHH
Q 024030 103 SISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL------STTSAFQAA 176 (273)
Q Consensus 103 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l------~~~~~~~~~ 176 (273)
+ .+.+++.|++.|+ +.+...+.....+.|.+| ++|++++++.+...++|..++|.+++.+ +||..|...
T Consensus 86 ~---~~~l~~~~~~~g~-g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~ 160 (355)
T TIGR00896 86 G---TALLFAGTALIGV-GIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWW 160 (355)
T ss_pred c---HHHHHHHHHHHHH-HHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 5 7788899999998 555555677778888886 6899999999999999999888877655 277777766
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchHHHHHHHHhhcchhHHHHHHHH
Q 024030 177 TIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAF 256 (273)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 256 (273)
++..++.. ....|+.+++++++ + +...+ ..+ ..+|+|.++...+..+
T Consensus 161 ~~~~~~~~---~~~~~~~~~~~~~~------------------~-----~~~~~---~~~----~~~~~~~~~~~~~~~~ 207 (355)
T TIGR00896 161 ALPALLAL---LAWIPQVRRRVAAN------------------Q-----TTTRL---TPV----RIWRSPLAWQVTVFFG 207 (355)
T ss_pred HHHHHHHH---HHHhhhhccccCCC------------------C-----CCCCC---CCc----hhhcCHhHHHHHHHHH
Confidence 55433322 22344432211110 0 00000 111 1456677777766666
Q ss_pred Hhccccccceeeeecc
Q 024030 257 FSGLSEGGMQASFLVY 272 (273)
Q Consensus 257 ~~~~~~~~~~~~~~~y 272 (273)
+....+.+..+++|.|
T Consensus 208 ~~~~~~~~~~~~lp~~ 223 (355)
T TIGR00896 208 LQSGLYYSLIGWLPAI 223 (355)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666666666665
No 78
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.78 E-value=3.8e-18 Score=147.35 Aligned_cols=217 Identities=18% Similarity=0.093 Sum_probs=164.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchh
Q 024030 44 DECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEG 123 (273)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 123 (273)
++.+....+.+.+.+++.++++++.+++|.+.||++..+.+....+...+..++.....+ ++.+++.|++.|+ ..+
T Consensus 74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s---~~~~ialr~llGl-~es 149 (495)
T KOG2533|consen 74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHS---FPGLIALRFLLGL-FES 149 (495)
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHH-Hhc
Confidence 444566677899999999999999999999999999777777777666666655555666 8999999999998 777
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh----------hhHHHHHHHHHHHHHHHHHHHHHhcC
Q 024030 124 SINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----------STTSAFQAATIVSMLAAAYMRVFLKD 193 (273)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l----------~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (273)
..+|....+++.++.+++|+..+|++++..++|.++|.+++..+ |||+.|.+.+++.++..++..+++|+
T Consensus 150 ~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~ 229 (495)
T KOG2533|consen 150 GGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPD 229 (495)
T ss_pred ccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecC
Confidence 77799999999999999999999999999999999998887662 89999999999998888887888988
Q ss_pred CCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchHHHHHHHHhhcchhHHHHHHHHHhccccccceeeeeccC
Q 024030 194 DVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLVYI 273 (273)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 273 (273)
.+.+..-.++. +++......++++......+ .+..+ +...+++|++|...+..++.....+++.+|+|+|+
T Consensus 230 ~P~~~~fl~~~------ek~~~~~~~~~~~~~~~~~~--~~~~~-~~~a~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l 300 (495)
T KOG2533|consen 230 NPSKAWFLTDE------EKELVVERLRESPSGGIENK--FKWKG-FKEALKDPGVWPFSLCYFFLKLVNYGFSYWLPLYL 300 (495)
T ss_pred ChhhccccchH------HHHHHHHHHHhccCCCcccc--cCHHH-HHHHHhchhHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 76643211000 00000000000001111110 12222 23367899999999999999999999999999875
No 79
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.77 E-value=5.4e-17 Score=138.77 Aligned_cols=178 Identities=16% Similarity=0.219 Sum_probs=128.1
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhH-
Q 024030 7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLT- 85 (273)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~- 85 (273)
+......++..++..++.....|.+|.++.+. ++.+..+.|++.+...+...+.+++.|.++||+||||.++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~-------~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~dr~g~r~~~~~ 86 (393)
T PRK15011 14 DLTSTAFLIVAFLTGIAGALQTPTLSIFLTDE-------VHARPAMVGFFFTGSAVIGILVSQFLAGRSDKRGDRKSLIV 86 (393)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHH
Confidence 44566677788889999999999999998553 3566677898877666655555555555599999998754
Q ss_pred HHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhH--HHHHHHHHHHHHHHHHHHHHH
Q 024030 86 LPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQR--ASAFGILLGVLSASFVCGTLA 163 (273)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r--~~~~~~~~~~~~~g~~~gp~~ 163 (273)
.+.+...++..++.+.++ ++.+++.+.+.+. ..+...+...++..|..++++| +...++.+...++|..+||.+
T Consensus 87 ~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i 162 (393)
T PRK15011 87 FCCLLGVLACTLFAWNRN---YFVLLFVGVFLSS-FGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPL 162 (393)
T ss_pred HHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHH-HHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHH
Confidence 555555566666667666 6766555555443 2335557888888888776655 344578888899999999999
Q ss_pred HHHh----hhHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 024030 164 ARFL----STTSAFQAATIVSMLAAAYMRVFLKDDV 195 (273)
Q Consensus 164 ~~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (273)
++.+ +||..|+..++..++..++.++..||.+
T Consensus 163 ~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~ 198 (393)
T PRK15011 163 AYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMR 198 (393)
T ss_pred HHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCccC
Confidence 8876 8999999888777766666566677754
No 80
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=99.77 E-value=1.9e-16 Score=134.06 Aligned_cols=146 Identities=10% Similarity=0.055 Sum_probs=122.9
Q ss_pred chhHHHHH-HHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchh
Q 024030 45 ECSLAIYL-SGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEG 123 (273)
Q Consensus 45 ~~~~~~~~-~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 123 (273)
+.+++..+ .|.+.+++..++.++.++.|.++||+|.|+++..+.+...+...+..+.++ ++.+.+.|++.|+ +.+
T Consensus 55 elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~S---l~~L~i~R~llGv-aEA 130 (511)
T TIGR00806 55 VLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTS---VWHMQLMEVFYSV-TMA 130 (511)
T ss_pred HcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH-HHH
Confidence 34667777 899999999999999999999999999999999999999999999999888 8999999999998 777
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHH---HHHHHHHHHHHHHHHHhcCCCC
Q 024030 124 SINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL---STTSAFQ---AATIVSMLAAAYMRVFLKDDVP 196 (273)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l---~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 196 (273)
... +...++.+++|+++|++++|+...+..+|.++++++++++ +|++-.. +......+++++ .+++|..++
T Consensus 131 ~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln~Isl~s~~~a~~~-a~~LP~~~~ 207 (511)
T TIGR00806 131 ARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTLNIISLVFMTFSVFL-ALFLKRPKR 207 (511)
T ss_pred HHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHH-HHhCCCCch
Confidence 776 9999999999999999999999999999999999888876 7765433 333333333333 667775443
No 81
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.77 E-value=2.7e-17 Score=140.05 Aligned_cols=172 Identities=16% Similarity=0.063 Sum_probs=119.1
Q ss_pred HHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHH
Q 024030 20 WGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILA 99 (273)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~ 99 (273)
+.+..+.+.+..+.+.++...+ .++................++..+++++.|+++||+|||+++..+.++..++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~ 83 (394)
T TIGR00883 5 EWFDFYLYGFAAVLVFHTFFPP-SGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIG 83 (394)
T ss_pred hHHHHHHHHHHHHHHHHHhcCC-CCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555554443221 112122222323334445566678999999999999999999999999999988888
Q ss_pred hccCchh-----HHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHH--------
Q 024030 100 YRRSISF-----FYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF-------- 166 (273)
Q Consensus 100 ~~~~~~~-----~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~-------- 166 (273)
+.++... .+.+++.|+++|+ +.+...+...+++.|+.|+++|++..++...+..+|..+++.++..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~r~l~G~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~ 162 (394)
T TIGR00883 84 LLPSYATIGIWAPILLLLARLIQGF-SLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDD 162 (394)
T ss_pred hCCChhhhHHHHHHHHHHHHHHHHh-hccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 8776211 1257888999998 5555658889999999999999999999999999999998876543
Q ss_pred ----hhhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 024030 167 ----LSTTSAFQAATIVSMLAAAYMRVFLKDD 194 (273)
Q Consensus 167 ----l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (273)
.+||++|.+.++..++.... ....||+
T Consensus 163 ~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~~ 193 (394)
T TIGR00883 163 ALLEWGWRIPFLVSAVLVLIGLYL-RRNLEET 193 (394)
T ss_pred HhhccchHHHHHHHHHHHHHHHHH-HHhcCCC
Confidence 26888888766655444332 3344554
No 82
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.77 E-value=1.1e-17 Score=144.19 Aligned_cols=178 Identities=12% Similarity=0.022 Sum_probs=118.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhH
Q 024030 6 EIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLT 85 (273)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~ 85 (273)
+++.++......++...+.+...|++|.|+++. ++.+..+.|++.+...++..+++++.|+++||+|||+++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~ 80 (420)
T PRK09528 8 KNPNYWIFSLFFFFFFFIWSSWFSFFPIWLHDI-------NGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLL 80 (420)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHH
Confidence 356777777778888888888999999998763 3677788999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHh---ccCc--hhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHH
Q 024030 86 LPLTLSIIPLAILAY---RRSI--SFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCG 160 (273)
Q Consensus 86 ~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g 160 (273)
++..+..+....+.. .+.. .......+..+..|. ......+....+..+. .++++...|......++|..++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~g~~~g~~~~~~~~g~~i~ 157 (420)
T PRK09528 81 WIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGF-GFLAGAGAIEAYIERV--SRRSGFEYGRARMWGSLGWALC 157 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhccchhhhhhHHHHH--HhhccccchhhHHhhhHHHHHH
Confidence 766555443322111 1100 001112222333332 1111112233333222 2456677888888899999999
Q ss_pred HHHHHHh---hhHHHHHHHHHHHHHHHHHHHHHhcC
Q 024030 161 TLAARFL---STTSAFQAATIVSMLAAAYMRVFLKD 193 (273)
Q Consensus 161 p~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (273)
|.+++.+ +|+.+|++.++..++..++.++..+|
T Consensus 158 ~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 193 (420)
T PRK09528 158 AFIAGILFNINPQINFWLGSGSALILLVLLFFAKPD 193 (420)
T ss_pred HHHHHHHHhcCchHhHHHHHHHHHHHHHHHhccccc
Confidence 9999877 78888988777766655553333333
No 83
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.76 E-value=5.9e-17 Score=135.71 Aligned_cols=163 Identities=25% Similarity=0.343 Sum_probs=140.6
Q ss_pred HHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHH
Q 024030 12 HLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLS 91 (273)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~ 91 (273)
......+....+.....+..|.+.++. +.+..+.+++.+...++..++.++.|+++||+|||+.+..+....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~ 74 (352)
T cd06174 3 LLFLGFFLSGLDRGLLSPALPLLAEDL--------GLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLF 74 (352)
T ss_pred HHHHHHHHHHHhhhhhHhhHHHHHHHc--------CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHH
Confidence 345566677778888888999987654 455677899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh----
Q 024030 92 IIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL---- 167 (273)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l---- 167 (273)
.++.......++ .+.+++.|++.|+ +.+...+...+++.|.+|+|+|++++++.+...++|..++|.+++.+
T Consensus 75 ~~~~~~~~~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 150 (352)
T cd06174 75 ALGSLLLAFASS---LWLLLVGRFLLGL-GGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESL 150 (352)
T ss_pred HHHHHHHHHhcc---HHHHHHHHHHHHc-ccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999888888777 8899999999998 66666789999999999999999999999999999999999998877
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 024030 168 STTSAFQAATIVSMLAAAY 186 (273)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~ 186 (273)
+|+..+.+.++..++..+.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~ 169 (352)
T cd06174 151 GWRWLFLILAILGLLLALL 169 (352)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 6888888887776665555
No 84
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.76 E-value=6.9e-18 Score=144.21 Aligned_cols=150 Identities=18% Similarity=0.198 Sum_probs=122.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchh
Q 024030 44 DECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEG 123 (273)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 123 (273)
++...+. ..+.+.+++.++.++++.+.|.++||+|||..+.++.+...++..++.++...+.+..+++.|++.|+ ..|
T Consensus 54 s~~~~~~-lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl-~~g 131 (485)
T KOG0569|consen 54 SDSTLDL-LWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGL-ACG 131 (485)
T ss_pred ChHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HhH
Confidence 3333443 45888999999999999999999999999999999988888887777765555558999999999998 778
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHH------HHhhhHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 024030 124 SINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAA------RFLSTTSAFQAATIVSMLAAAYMRVFLKDDVP 196 (273)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (273)
........++.|..|++.||....+...+..+|..+|..++ ..-.|++.+....+..++.+++ ..++||+++
T Consensus 132 l~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~-l~~~PESPk 209 (485)
T KOG0569|consen 132 LSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLAL-LPFLPESPK 209 (485)
T ss_pred HHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHH-HhcCCCCcc
Confidence 88889999999999999999999999999999988885443 2225777777766666655555 778999987
No 85
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=99.76 E-value=1.7e-16 Score=136.93 Aligned_cols=238 Identities=14% Similarity=0.112 Sum_probs=158.3
Q ss_pred hHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhh----hhCCchhhH
Q 024030 10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSD----QYGRKAMLT 85 (273)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~d----r~grr~~~~ 85 (273)
+..+....+-..++.....++++.|+++. +.+....+++..+..+..++.+|+.|.++| |+||||+++
T Consensus 6 li~~~~~~~Giq~~~~l~~~~l~~yl~~l--------g~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~i 77 (477)
T TIGR01301 6 LLRVASVAAGVQFGWALQLSLLTPYVQEL--------GIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFI 77 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc--------CCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHH
Confidence 33344444455677778888888887653 556688899999999999999999999999 599999988
Q ss_pred HH-HHHHHHHHHHHHhccCch------------h--HHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhH--HHHHHH
Q 024030 86 LP-LTLSIIPLAILAYRRSIS------------F--FYAYYALRTLTAMVCEGSINCLALAYVADNISERQR--ASAFGI 148 (273)
Q Consensus 86 ~~-~~~~~~~~~~~~~~~~~~------------~--~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r--~~~~~~ 148 (273)
.+ ....+++..++.+.++.. . .+..++...+..+ ......+...++++|.+|+++| +.+.++
T Consensus 78 l~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~-~~n~~~~p~rALiaDl~p~~~~~~~~a~~~ 156 (477)
T TIGR01301 78 AAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDV-ANNMLQGPCRAFLADLTGGDARRTRIANAY 156 (477)
T ss_pred HHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHH-HHHHHHHHHHHhcccccCchhHHHHHHHHH
Confidence 65 555556656665544310 0 0122233333333 4455667889999999998865 579999
Q ss_pred HHHHHHHHHHHHHHHHHHh-------------------hhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 024030 149 LLGVLSASFVCGTLAARFL-------------------STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIIT 209 (273)
Q Consensus 149 ~~~~~~~g~~~gp~~~~~l-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (273)
.+...++|..+|+.+++.. +.+..|++.+++.++..++..+..||.+..++++.+.
T Consensus 157 ~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~----- 231 (477)
T TIGR01301 157 FSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFIN----- 231 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchh-----
Confidence 9999999999999988764 2366788877777777777777888865422211000
Q ss_pred CCCcccccCCCCCCCccccccccchHHHHHHHHhh-cchhHHHHHHHHHhccccccceeeeecc
Q 024030 210 EETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRS-SVTLSQAAVVAFFSGLSEGGMQASFLVY 272 (273)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~y 272 (273)
+ +.++..+. +..+.+++.++.+++ .|.+++++++.++.++++..+..+...|
T Consensus 232 ------~--~~~~~~~~---~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~ 284 (477)
T TIGR01301 232 ------S--EAAPPSKH---GEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDW 284 (477)
T ss_pred ------h--hccccccc---chhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 0 00000000 111234455555443 5778899999999999888776665544
No 86
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=99.74 E-value=4.1e-16 Score=127.97 Aligned_cols=223 Identities=18% Similarity=0.124 Sum_probs=166.0
Q ss_pred HHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHH
Q 024030 11 SHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTL 90 (273)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~ 90 (273)
.......++..+......+.+|.+.+ .++++..+++++..++..++++++++.|++.+|+|+|+-++.|+.+
T Consensus 16 v~~t~lFfl~G~~~~l~diLip~l~~--------~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l 87 (422)
T COG0738 16 VLLTSLFFLWGFITCLNDILIPHLKE--------VFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLL 87 (422)
T ss_pred HHHHHHHHHHHHHhhcchhhHHHHHH--------HhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHH
Confidence 33344444555555666678888743 4478888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh---
Q 024030 91 SIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL--- 167 (273)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l--- 167 (273)
++++..++.-+.+...+..+++..++.|. +.+...+..+++++...++++.++.+++.+..+++|..+||++++.+
T Consensus 88 ~avg~~lF~pAa~~~~y~~FL~~lFila~-Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils 166 (422)
T COG0738 88 YAVGAALFWPAASSKSYGFFLVALFILAS-GIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILS 166 (422)
T ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHHHHh-hhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence 99999888744444448888888999997 77888899999999999999999999999999999999999998875
Q ss_pred --------------------hhHHHHHHHHHHHHHHHHHHHHHh--cCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCc
Q 024030 168 --------------------STTSAFQAATIVSMLAAAYMRVFL--KDDVPNDDDDDLTRPIITEETEGVNQNESNSPVK 225 (273)
Q Consensus 168 --------------------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (273)
.++.+|...+...++..+. .... |+.+..+++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~-~~~~k~p~~~~~~~~------------------------- 220 (422)
T COG0738 167 GVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVL-ILLSKLPDLQVAAPS------------------------- 220 (422)
T ss_pred hhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH-HHhccCCcCCccccc-------------------------
Confidence 1355566555444433333 2212 221111111
Q ss_pred cccccccchHHHHHHHHhhcchhHHHHHHHHHhccccccceeeeeccC
Q 024030 226 IPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLVYI 273 (273)
Q Consensus 226 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 273 (273)
..+..+. ....++|+|+++...+..|+|.-++....++++.|+
T Consensus 221 --~~~~~~~---~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~ 263 (422)
T COG0738 221 --LGASGSA---GLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYL 263 (422)
T ss_pred --ccccccc---hHHHHHhChHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 0011001 223378899999999999999999888888887763
No 87
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.71 E-value=4.6e-15 Score=134.39 Aligned_cols=139 Identities=23% Similarity=0.134 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHH
Q 024030 53 SGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAY 132 (273)
Q Consensus 53 ~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 132 (273)
......+..++.+++.++.|+++||+|||++++++.++.+++.+++.+.++ .+.+++.+++.|+ ..+...+...++
T Consensus 597 ~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s---~~~ll~~~~l~g~-~~~~~~~~~~a~ 672 (742)
T TIGR01299 597 IYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNS---ESAMIALLCLFGG-LSIAAWNALDVL 672 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 344556777899999999999999999999999999999988888887776 5566677777776 444455789999
Q ss_pred HHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 024030 133 VADNISERQRASAFGILLGVLSASFVCGTLAARFL---STTSAFQAATIVSMLAAAYMRVFLKDDVP 196 (273)
Q Consensus 133 ~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (273)
++|++|++.|++++|+.+....+|.++||.+++.+ +...+|.+.+++.+++.++ ..++||++.
T Consensus 673 ~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~~~~pf~i~a~~lll~~ll-~~~LPET~~ 738 (742)
T TIGR01299 673 TVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGITKAAPILFASAALACGGLL-ALKLPDTRG 738 (742)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-HHhCCCCcc
Confidence 99999999999999999999999999999998866 3356777777766665555 445687654
No 88
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.71 E-value=8e-16 Score=133.30 Aligned_cols=220 Identities=14% Similarity=0.053 Sum_probs=147.7
Q ss_pred HHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhh----hCCchh-hHHHHHHHH
Q 024030 18 FLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQ----YGRKAM-LTLPLTLSI 92 (273)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr----~grr~~-~~~~~~~~~ 92 (273)
+.......+..++++.|+.+. .+.+....|++.++..+...+..|+.|.++|| +||||. ++.+....+
T Consensus 9 ~~~~~~~~~~~~~l~~~~~~~-------~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~ 81 (437)
T TIGR00792 9 FGNNFIFAIVSTYLLFFYTDV-------LGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFS 81 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHc-------cCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHH
Confidence 334455566777888887653 36778889999999999999999999999998 677665 556767777
Q ss_pred HHHHHHHhccCch---hHHHHHHHHHHHhhhchhhHHHHHHHHHHhcC-ChhhHHHHHHHHHHHHHHHHHHHHHHHH---
Q 024030 93 IPLAILAYRRSIS---FFYAYYALRTLTAMVCEGSINCLALAYVADNI-SERQRASAFGILLGVLSASFVCGTLAAR--- 165 (273)
Q Consensus 93 ~~~~~~~~~~~~~---~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~gp~~~~--- 165 (273)
++..++...++.. ..+.+++.+++.+. +.+.......++..|.. ++++|++..++.+....+|..+++.+.+
T Consensus 82 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~ 160 (437)
T TIGR00792 82 IVLVLLFTTPDFSATGKLVYAYITYILLGL-FYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLV 160 (437)
T ss_pred HHHHHHHhCCCCCcchHHHHHHHHHHHHHH-HHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766666554321 23455666677776 44555566778888887 5789999999988887777655543322
Q ss_pred --------HhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchHHH
Q 024030 166 --------FLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRD 237 (273)
Q Consensus 166 --------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (273)
..+|+..+.+.+++.++..++..+..||++++.+++ + +...+.++
T Consensus 161 ~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~------------------------~---~~~~~~~~ 213 (437)
T TIGR00792 161 SYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERYSEIPKN------------------------I---EKKLSLKQ 213 (437)
T ss_pred HHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCcc------------------------c---ccCCCHHH
Confidence 126888888887777666655455566543211110 0 00113455
Q ss_pred HHHHHhhcchhHHHHHHHHHhccccccceeeeecc
Q 024030 238 LICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLVY 272 (273)
Q Consensus 238 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 272 (273)
.++.+++||.++..++..++...+......+.++|
T Consensus 214 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (437)
T TIGR00792 214 IFKALFKNDQLLILCLAYLFYNLAFNIKNGVQVYY 248 (437)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHcchhhee
Confidence 56668889999998888888777766655444433
No 89
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.70 E-value=6.5e-15 Score=126.86 Aligned_cols=186 Identities=12% Similarity=0.069 Sum_probs=136.3
Q ss_pred HHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHH
Q 024030 11 SHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTL 90 (273)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~ 90 (273)
+...+..++..........+.|.+.++.........+.+....|...++..+...++.++.|+++||+|+|+++..+.+.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~ 290 (418)
T TIGR00889 211 AIFFFFSMLLGAPLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVA 290 (418)
T ss_pred eeHHHHHHHHHhHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 33444444444444455567777776531011111124456778999999999999999999999999999999999988
Q ss_pred HHHHHHHHHhccCch-hHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHH-HHHHHHHHHHHHHHHHh-
Q 024030 91 SIIPLAILAYRRSIS-FFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILL-GVLSASFVCGTLAARFL- 167 (273)
Q Consensus 91 ~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~gp~~~~~l- 167 (273)
..++..++....... ..+.+++..++.|+ +.+...+....++.|.+|+++|++++|+.+ ...++|..+||.++|.+
T Consensus 291 ~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~-~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~ 369 (418)
T TIGR00889 291 WALRFGFFAYGDPEYFGYALLFLSMIVYGC-AFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMV 369 (418)
T ss_pred HHHHHHHHHHcCcchhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 888766665532211 13556677888887 556666788889999999999999999997 67889999999999876
Q ss_pred ---------hhHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 024030 168 ---------STTSAFQAATIVSMLAAAYMRVFLKDDVPN 197 (273)
Q Consensus 168 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (273)
+|+..|.+.++..++..++..+++||+.+.
T Consensus 370 ~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~~ 408 (418)
T TIGR00889 370 EKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHNA 408 (418)
T ss_pred HHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence 267888888888777777777888876443
No 90
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=99.69 E-value=2.8e-15 Score=129.96 Aligned_cols=171 Identities=11% Similarity=0.010 Sum_probs=130.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhh-CCchhh
Q 024030 6 EIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQY-GRKAML 84 (273)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~ 84 (273)
+++.++..+...+...++++....++|.|+++. ++.+....+.+.+.+.....++.+++|+++||+ ||||++
T Consensus 7 ~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~-------lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~i 79 (493)
T PRK15462 7 QPRAIYYVVALQIWEYFSFYGMRALLILYLTNQ-------LKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAV 79 (493)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHH
Confidence 355677777778888888999999999998763 355667778888889999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChh--hHHHHHHHHHHHHHHHHHHHHH
Q 024030 85 TLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISER--QRASAFGILLGVLSASFVCGTL 162 (273)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~g~~~gp~ 162 (273)
.++.++..++..++...... ...+.+...+..+ +.|...+...++++|.+|++ +|.+++++.+...++|..++|.
T Consensus 80 liG~il~~lg~lll~~~~~~--~~~~~l~l~li~i-G~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~ 156 (493)
T PRK15462 80 MLGALLMAIGHVVLGASEIH--PSFLYLSLAIIVC-GYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPI 156 (493)
T ss_pred HHHHHHHHHHHHHHHHhhcc--hhHHHHHHHHHHH-hcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHH
Confidence 99999988887666543221 1223333233333 33444466788999999875 7999999999999999999999
Q ss_pred HHHHh----hhHHHHHHHHHHHHHHHHH
Q 024030 163 AARFL----STTSAFQAATIVSMLAAAY 186 (273)
Q Consensus 163 ~~~~l----~~~~~~~~~~~~~~~~~~~ 186 (273)
+.+++ +|++.|.+.++..++..+.
T Consensus 157 l~g~L~~~~Gw~~~F~iaaigm~l~li~ 184 (493)
T PRK15462 157 ACGYAQEEYSWAMGFGLAAVGMIAGLVI 184 (493)
T ss_pred HHHHHHhhhChHHHHHHHHHHHHHHHHH
Confidence 99887 7999998876544444333
No 91
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=99.68 E-value=2.9e-15 Score=131.68 Aligned_cols=168 Identities=14% Similarity=0.103 Sum_probs=130.0
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhh-hCCchhhH
Q 024030 7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQ-YGRKAMLT 85 (273)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~grr~~~~ 85 (273)
++.++..+...+...++++...++++.|+++.. +.+....+.+.+.+........+++|+++|| +|||+++.
T Consensus 20 p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~l-------g~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~ 92 (500)
T PRK09584 20 PKAFYLIFSIELWERFGYYGLQGIMAVYLVKQL-------GMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIM 92 (500)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 345777788888888999999999999996643 4444555666666555555666789999999 59999999
Q ss_pred HHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChh--hHHHHHHHHHHHHHHHHHHHHHH
Q 024030 86 LPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISER--QRASAFGILLGVLSASFVCGTLA 163 (273)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~g~~~gp~~ 163 (273)
.+.++..++..++.++++. .+.+.+.+++.|+ +.|...+...+++.|++|++ +|+.+.++.+.+.++|..+||.+
T Consensus 93 ~g~~~~~ig~~l~~~~~~~--~~~l~~~~~l~gi-g~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i 169 (500)
T PRK09584 93 LGAIVLAIGYALVAWSGHD--AGIVYMGMATIAV-GNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLA 169 (500)
T ss_pred HHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHH-hhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHH
Confidence 9999999888887775431 4556678888888 56666678889999999864 35568888899999999999999
Q ss_pred HHHh----hhHHHHHHHHHHHHHHH
Q 024030 164 ARFL----STTSAFQAATIVSMLAA 184 (273)
Q Consensus 164 ~~~l----~~~~~~~~~~~~~~~~~ 184 (273)
++++ +|++.|.+.++...+..
T Consensus 170 ~g~l~~~~g~~~~F~i~~i~~~i~~ 194 (500)
T PRK09584 170 TPWLAAKYGWSVAFALSVVGMLITV 194 (500)
T ss_pred HHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 9887 89999998776544433
No 92
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.68 E-value=6.6e-15 Score=129.45 Aligned_cols=171 Identities=15% Similarity=0.119 Sum_probs=114.2
Q ss_pred HHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHH
Q 024030 18 FLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAI 97 (273)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~ 97 (273)
+.....++....++|.|+++.. +.+....++......++..++.++.|+++||+|||+.+..+.+...+....
T Consensus 260 ~~~~~~~~~~~~~~p~~l~~~~-------g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~ 332 (490)
T PRK10642 260 IATNVTYYMLLTYMPSYLSHNL-------HYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIP 332 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 3344566677789999986533 223334456667778888999999999999999999888776544332222
Q ss_pred -HHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhHH
Q 024030 98 -LAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL-----STTS 171 (273)
Q Consensus 98 -~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l-----~~~~ 171 (273)
+..... +....+++.+++.|+ ..+...+....+++|.+|++.|+++.|+.+....+++.++|.+.+.+ +|+.
T Consensus 333 ~~~~~~~-~~~~~~~~~~~~~g~-~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~ 410 (490)
T PRK10642 333 AFILINS-NVIGLIFAGLLMLAV-ILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMM 410 (490)
T ss_pred HHHHHhC-CCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchH
Confidence 222111 115566677887776 43444466778889999999999999986555566677888887765 3565
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 024030 172 AFQAATIVSMLAAAYMRVFLKDDVPND 198 (273)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (273)
++++..+..++..+. .+++||+++..
T Consensus 411 ~~~~~~~~~~i~~~~-~~~~pes~~~~ 436 (490)
T PRK10642 411 PAYYLMVVAVIGLIT-GVTMKETANRP 436 (490)
T ss_pred HHHHHHHHHHHHHHH-HHHhccccCCC
Confidence 665555554444444 45678876643
No 93
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.67 E-value=4.3e-15 Score=127.98 Aligned_cols=212 Identities=11% Similarity=0.060 Sum_probs=136.8
Q ss_pred HHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCC-chhhHHHHHHH
Q 024030 13 LFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGR-KAMLTLPLTLS 91 (273)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~gr-r~~~~~~~~~~ 91 (273)
+.+..++......+..|.++.++++. .+.+..+.|++.+...++.+++++++|.++||+|| |+++.++.+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~l~~~l~~~-------~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~ 79 (418)
T TIGR00889 7 LKFMSFLQWFIWGSWLVTLGSYMSKT-------LHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAG 79 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 45566777788888889999998653 36777889999999999999999999999999965 66777777777
Q ss_pred HHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHH----H----hcCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 024030 92 IIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYV----A----DNISERQRASAFGILLGVLSASFVCGTLA 163 (273)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~----~----~~~~~~~r~~~~~~~~~~~~~g~~~gp~~ 163 (273)
.+...+..+.++ ++.+++.+++.|+ ..+...+...+.. . |......|.+..| .+|..+||.+
T Consensus 80 ~~~~~~~~~~~~---~~~~~~~~~l~~~-~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l 149 (418)
T TIGR00889 80 ALLLFFAAQVTT---PAGMFPVLLANSL-AYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWA 149 (418)
T ss_pred HHHHHHHHHhcC---HHHHHHHHHHHHH-HHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHH
Confidence 777777777777 7888888888887 3333334444443 2 2233334555544 3678888888
Q ss_pred HHHhhh---HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchHHHHHH
Q 024030 164 ARFLST---TSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLIC 240 (273)
Q Consensus 164 ~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (273)
++.++. +.+|++.++..++..+. .+.+||+++.++++ +.+.++ ..+...+
T Consensus 150 ~g~l~~~~~~~~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~------------------------~~~~~~--~~~~~~~ 202 (418)
T TIGR00889 150 VSLLDIELSNIQLYITAGSSALLGVF-ALTLPDIPVAKSTA------------------------KMSIKV--MLGLDAF 202 (418)
T ss_pred HHHhcccchhHHHHHHHHHHHHHHHH-HhcCCCCCCCcccc------------------------ccCHHH--HhhhhHH
Confidence 887733 33566666655554443 45667653222110 000000 1111122
Q ss_pred HHhhcchhHHHHHHHHHhccccccceee
Q 024030 241 LLRSSVTLSQAAVVAFFSGLSEGGMQAS 268 (273)
Q Consensus 241 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (273)
.++|+|+++.+.+..++........+.+
T Consensus 203 ~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 230 (418)
T TIGR00889 203 ILFKNKRMAIFFFFSMLLGAPLQITNIF 230 (418)
T ss_pred HHhcCCCeeeHHHHHHHHHhHHHHHHHh
Confidence 3678888888877777766554443333
No 94
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=99.66 E-value=1.7e-16 Score=140.54 Aligned_cols=144 Identities=24% Similarity=0.275 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHH
Q 024030 48 LAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINC 127 (273)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 127 (273)
.+.....+..+++.++.+++++++|.++||+|||++++.+.++..++.+..+++++ ++.+++.|++.|++..+ ...
T Consensus 115 ~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~---~~~~~~~Rfl~G~~~~~-~~~ 190 (521)
T KOG0255|consen 115 DSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPN---YWMFLIFRFLSGFFGSG-PLT 190 (521)
T ss_pred CcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCc---HHHHHHHHHHHHhhccc-hhH
Confidence 34456677888999999999999999999999999999999999999999999999 99999999999995544 448
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 024030 128 LALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL--STTSAFQAATIVSMLAAAYMRVFLKDDVPN 197 (273)
Q Consensus 128 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (273)
....++.|++++++|+.+..+ ......++.++|..++++ +||+.+++..+...+.+++ ++..||+++.
T Consensus 191 ~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~~Wr~~~~~~~~~~~~~~~~-~~l~~Es~rw 260 (521)
T KOG0255|consen 191 VGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITRDWRWLFWIISIPSGLFLLL-WFLPPESPRW 260 (521)
T ss_pred HhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HHccCcChHH
Confidence 999999999999999999999 777777777777777766 8999999988877766665 5556687653
No 95
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=99.66 E-value=1.9e-15 Score=109.70 Aligned_cols=131 Identities=21% Similarity=0.313 Sum_probs=110.1
Q ss_pred HHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCC
Q 024030 59 IIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNIS 138 (273)
Q Consensus 59 ~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~ 138 (273)
.+.++..+++++.|++.||+|||+.+..+.....++.......++ .+.+.+.+++.|+ +.+...+...+++.|..|
T Consensus 6 ~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~ 81 (141)
T TIGR00880 6 GYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSN---ITVLIIARFLQGF-GAAFALVAGAALIADIYP 81 (141)
T ss_pred eehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHH-HHHHHHHhHHHHHHHHCC
Confidence 446778899999999999999999999988888888777777766 7888889999998 556666889999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHHHHHHHhcC
Q 024030 139 ERQRASAFGILLGVLSASFVCGTLAARFL----STTSAFQAATIVSMLAAAYMRVFLKD 193 (273)
Q Consensus 139 ~~~r~~~~~~~~~~~~~g~~~gp~~~~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (273)
+++|++++++.+....+|..++|.+++.+ +|++.+.+.+...++..+...+..||
T Consensus 82 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 82 PEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred hhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 99999999999999999999999988877 67888888777776666665555554
No 96
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.66 E-value=3.4e-14 Score=121.43 Aligned_cols=224 Identities=14% Similarity=0.124 Sum_probs=145.7
Q ss_pred hHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHH--HHHHHHHHHhHhhhhhH-HhhhhCCchhhHH
Q 024030 10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQ--QAIIGLGTLVMMPVIGN-LSDQYGRKAMLTL 86 (273)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~g~-l~dr~grr~~~~~ 86 (273)
+..+....+.+.+......|.+|.+++|. +.+..+.|+. .....+..++.+|+.+. .+||+||||.+++
T Consensus 3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~--------g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~ 74 (390)
T TIGR02718 3 VITLGLLYLSQGIPIGLAMDALPTLLRED--------GAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVL 74 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHH
Confidence 34455566778888899999999999875 5666778886 35668888889999855 7999999998765
Q ss_pred HHHHH-HHHHHHHH-hccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 024030 87 PLTLS-IIPLAILA-YRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAA 164 (273)
Q Consensus 87 ~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~ 164 (273)
+..+. ........ +........+++....+.++ ......+..+++..|..++++++...+....+..+|..+|+...
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~ 153 (390)
T TIGR02718 75 PMQCLVSACLASLALVGPDVAGAGWAVGLLACASL-ASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGT 153 (390)
T ss_pred HHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 55332 22222222 21121112233333444444 44455577888888888888888888888888888888888655
Q ss_pred HH----hhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchHHHHHH
Q 024030 165 RF----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLIC 240 (273)
Q Consensus 165 ~~----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (273)
+. .+|+.+|++.+++.++..+... ..+|++++++++ + .+ .. +..+
T Consensus 154 ~~l~~~~gw~~~f~~~a~l~~~~~~~~~-~~~~~~~~~~~~-------------------------~-~~---~~-~~~~ 202 (390)
T TIGR02718 154 LVLFGKFGQRPAFLLVACVPLASLVCVL-WLKDRAVASPEA-------------------------P-LA---RR-ASLF 202 (390)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHH-HcCCCCcCcccc-------------------------c-hh---hH-HHHH
Confidence 44 4999999999888776665533 344322111110 0 00 11 1123
Q ss_pred HHhhcchhHHHHHHHHHhccccccceeeeeccC
Q 024030 241 LLRSSVTLSQAAVVAFFSGLSEGGMQASFLVYI 273 (273)
Q Consensus 241 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 273 (273)
...|+|.++...+..+++..+....+.+.+.|+
T Consensus 203 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 235 (390)
T TIGR02718 203 RFFRRPLAWSLLALALLSAMTAVSGFGLSKLYL 235 (390)
T ss_pred HHHcCcCHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 366788888888888888877777777776653
No 97
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.65 E-value=2.3e-18 Score=149.83 Aligned_cols=147 Identities=20% Similarity=0.274 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHH
Q 024030 49 AIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCL 128 (273)
Q Consensus 49 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 128 (273)
+....++..+...++..++++++|.++||+|||+.++.+..+..++.++..+++....++.+.+.|++.|+ +.|...+.
T Consensus 44 ~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~-~~g~~~~~ 122 (451)
T PF00083_consen 44 SSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGF-GIGGAYVV 122 (451)
T ss_pred hHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence 55677899999999999999999999999999999999999999999999998811118999999999998 66666689
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh----h---hHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 024030 129 ALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----S---TTSAFQAATIVSMLAAAYMRVFLKDDVPN 197 (273)
Q Consensus 129 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (273)
...++.|..|+++|++..++.+....+|..++..++... + ||..+.+..+..++..+. .+++||+++-
T Consensus 123 ~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~-~~~~pESP~w 197 (451)
T PF00083_consen 123 SPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLL-RFFLPESPRW 197 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccce
Confidence 999999999999999999999999999888887665433 4 888887777666555444 5678998753
No 98
>PTZ00207 hypothetical protein; Provisional
Probab=99.64 E-value=6.5e-14 Score=123.53 Aligned_cols=146 Identities=12% Similarity=0.076 Sum_probs=112.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccCc---hhHHHHHHHHHHHhhhchh
Q 024030 47 SLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSI---SFFYAYYALRTLTAMVCEG 123 (273)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~g~~~~~ 123 (273)
+.+..+.+++.+... ....+.++.|+++||+|+|+++.++.++..++.++++++.+. .+++.+++.|++.|+ +.+
T Consensus 58 gls~~~l~~i~svg~-~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~-G~~ 135 (591)
T PTZ00207 58 NLTQRDLSTITTVGI-AVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTL-GCM 135 (591)
T ss_pred CcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHH-HHH
Confidence 455555666665533 334567789999999999999999999999999888876110 128899999999998 556
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHH-HHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 024030 124 SINCLALAYVADNISERQRASAFGILLGVLSASFVC-GTLAARFL--STTSAFQAATIVSMLAAAYMRVFLKDDV 195 (273)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-gp~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (273)
...+.....+.+++| ++||++.|+.....++|..+ +++..+.+ +|+..|++.+++.++..++.+.++++++
T Consensus 136 ~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~vl~~vv~ll~~~~vr~p~ 209 (591)
T PTZ00207 136 LFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFALVVGILAIVFMRLPP 209 (591)
T ss_pred HHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhheeCCc
Confidence 666778888899997 78999999999999999864 56666665 7788888888888777666666666553
No 99
>PRK10429 melibiose:sodium symporter; Provisional
Probab=99.64 E-value=4.7e-14 Score=123.53 Aligned_cols=226 Identities=11% Similarity=0.033 Sum_probs=142.1
Q ss_pred HHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhh----hhCCchhhH-HHH
Q 024030 14 FVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSD----QYGRKAMLT-LPL 88 (273)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~d----r~grr~~~~-~~~ 88 (273)
.++.+...+......++++.|++|. .+.+...+|.+..+..+...+..|+.|.++| |+||||.++ .+.
T Consensus 12 g~g~~~~~~~~~~~~~~l~~yyt~v-------~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~ 84 (473)
T PRK10429 12 GFGAFGKDFAIGIVYMYLMYYYTDV-------VGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGT 84 (473)
T ss_pred ccchhHHhHHHHHHHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhh
Confidence 3455556666777888899998764 3677889999999999999999999999999 669965544 566
Q ss_pred HHHHHHHHHHHhccC---chhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcC-ChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 024030 89 TLSIIPLAILAYRRS---ISFFYAYYALRTLTAMVCEGSINCLALAYVADNI-SERQRASAFGILLGVLSASFVCGTLAA 164 (273)
Q Consensus 89 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~gp~~~ 164 (273)
+..+++..++...++ ...++.+++..++.++ +.........++.+|+. ++++|.+..+.-....++|..+.+.+.
T Consensus 85 i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~~~-~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~ 163 (473)
T PRK10429 85 LANSVVLFLLFSAHLFEGTAQYVFVCVTYILWGM-TYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFT 163 (473)
T ss_pred HHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHH-HHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666555543332 1123344455555555 44555677888999998 689999999886666666654443332
Q ss_pred H----Hh-------hhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccc
Q 024030 165 R----FL-------STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIP 233 (273)
Q Consensus 165 ~----~l-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (273)
. .+ +|+....+.+++.++..+..++..||..+.++.+ ...+...
T Consensus 164 ~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~-------------------------~~~~~~~ 218 (473)
T PRK10429 164 LPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYSSDNQV-------------------------SAEGSHL 218 (473)
T ss_pred HHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceecCCccccc-------------------------cccccCC
Confidence 2 12 2333444444444433333333345532111110 0001112
Q ss_pred hHHHHHHHHhhcchhHHHHHHHHHhccccccceeeeecc
Q 024030 234 SIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLVY 272 (273)
Q Consensus 234 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 272 (273)
+.++.++.+++||.++.+++..++.+..........++|
T Consensus 219 ~~~~~~~~~~~n~~~~~ll~~~~~~~~~~~~~~~~~~y~ 257 (473)
T PRK10429 219 TLKDIVALIYKNDQLSCLLGMALAYNIASNIINGFAIYY 257 (473)
T ss_pred CHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhheeeE
Confidence 466666778899999998888888877666555554443
No 100
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.63 E-value=5e-14 Score=120.94 Aligned_cols=169 Identities=20% Similarity=0.251 Sum_probs=129.0
Q ss_pred HHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHH
Q 024030 18 FLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAI 97 (273)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~ 97 (273)
+..........+.+|.|..+.... ........|.+.++..++..++.+..|+++||+|||+.+..+.....++.+.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~ 304 (408)
T PRK09874 229 LIIQVATGSIAPILTLYVRELAGN----VSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIP 304 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHH
Confidence 333444555667888887764211 1122234567777778888999999999999999999998888777776666
Q ss_pred HHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHH
Q 024030 98 LAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----STTSAF 173 (273)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l----~~~~~~ 173 (273)
....++ .+.+.+.+++.|+ +.+...+...+.+.+..|+++|++.+++.+....+|..+||.++|.+ +|+..|
T Consensus 305 ~~~~~~---~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f 380 (408)
T PRK09874 305 MSFVQT---PLQLGILRFLLGA-ADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVF 380 (408)
T ss_pred HHHhcc---HHHHHHHHHHHHh-hhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHH
Confidence 666655 6777788888897 55666688888889999999999999999999999999999999877 788999
Q ss_pred HHHHHHHHHHHHHHHHHhcCC
Q 024030 174 QAATIVSMLAAAYMRVFLKDD 194 (273)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~ 194 (273)
.+.+++.++..++..+..+++
T Consensus 381 ~~~~~~~l~~~~~~~~~~~~~ 401 (408)
T PRK09874 381 LVTAGVVLFNAVYSWNSLRRR 401 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 988888877766655544443
No 101
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=99.63 E-value=2.5e-14 Score=126.38 Aligned_cols=142 Identities=24% Similarity=0.294 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHH
Q 024030 51 YLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLAL 130 (273)
Q Consensus 51 ~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~ 130 (273)
...+++.+...++..+++++.|+++|++|||+.++++.+...++.++.+++++ .+.+.++|++.|+ +.|.......
T Consensus 89 ~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~---~~~l~~GR~l~G~-g~G~~~~~~p 164 (513)
T KOG0254|consen 89 VRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPS---WYQLIVGRILTGL-GVGGASVLAP 164 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhh---HHHHHHHHHHhcc-chhhhhhcch
Confidence 45689999999999999999999999999999999999999999999999998 9999999999998 6666668999
Q ss_pred HHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 024030 131 AYVADNISERQRASAFGILLGVLSASFVCGTLAARFL-----STTSAFQAATIVSMLAAAYMRVFLKDDVPN 197 (273)
Q Consensus 131 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (273)
.+++|..|++.||...+..+....+|..++..++... +||..+.+..+.+++..+. .+++||+++.
T Consensus 165 iy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp~~ 235 (513)
T KOG0254|consen 165 VYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPESPRW 235 (513)
T ss_pred hhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCChHH
Confidence 9999999999999999999999999999997776666 5998888877777666666 7888988753
No 102
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.63 E-value=9.5e-14 Score=119.72 Aligned_cols=164 Identities=10% Similarity=0.027 Sum_probs=123.8
Q ss_pred HhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccCc
Q 024030 25 MMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSI 104 (273)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~ 104 (273)
.....++|.|.++. .+.+....|++.+...++..++.++.+++.||.++++.+..+.++..++.+++.+.++
T Consensus 240 ~~~~~~~p~~~~~~-------~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~- 311 (417)
T PRK10489 240 SAVRVLYPALADEV-------WQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPM- 311 (417)
T ss_pred HhHHHhhHHHHHhc-------cCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccch-
Confidence 34556788887652 2445567788888999999999999999999988888888887777777766666665
Q ss_pred hhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHH
Q 024030 105 SFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----STTSAFQAATIVS 180 (273)
Q Consensus 105 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l----~~~~~~~~~~~~~ 180 (273)
.+...+..++.|+ +.+...+...+++.|..|++.|++++|+.+....+|..+||.+.|.+ +.+..+...++..
T Consensus 312 --~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~ 388 (417)
T PRK10489 312 --WILAVLCLALFGY-LSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGL 388 (417)
T ss_pred --HHHHHHHHHHHHH-HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHH
Confidence 5666677777787 55555567778999999999999999999999999999999999887 4455666666655
Q ss_pred HHHHHHHHHHhcCCCCCCC
Q 024030 181 MLAAAYMRVFLKDDVPNDD 199 (273)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~ 199 (273)
++..++.....|+.++.+.
T Consensus 389 ~~~~~~~~~~~~~~~~~~~ 407 (417)
T PRK10489 389 LIIGVLLLLVLGELRRFRQ 407 (417)
T ss_pred HHHHHHHHHhccccccccc
Confidence 5555554566666554333
No 103
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.61 E-value=2.5e-13 Score=116.35 Aligned_cols=159 Identities=17% Similarity=0.118 Sum_probs=119.5
Q ss_pred HHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHH
Q 024030 20 WGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILA 99 (273)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~ 99 (273)
...+......++|.|..+. +. ...++..+.+.++..++.++.|++.||+|+|+.+..+..+..++.....
T Consensus 228 ~~~~~~~~~~~~~~~~~~~--------~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~ 297 (399)
T PRK05122 228 ASIGFGTIATFITLYYAAR--------GW--DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLW 297 (399)
T ss_pred HHHHHHHHHHHHHHHHHHc--------cc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 3445555667778777552 11 1234455667788888999999999999999998888887777777766
Q ss_pred hccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHH
Q 024030 100 YRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----STTSAFQA 175 (273)
Q Consensus 100 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l----~~~~~~~~ 175 (273)
..++ .+.+++..++.|+ +.+...+.......|..|+++|+++.|+.+....+|..++|.+.+.+ +|+..+.+
T Consensus 298 ~~~~---~~~~~~~~~l~G~-~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~ 373 (399)
T PRK05122 298 LAPS---PWMALIGAALTGF-GFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLA 373 (399)
T ss_pred Hhcc---HHHHHHHHHHHHH-hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 6665 6667777888887 44555567777888999999999999999999999998888887776 67888888
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 024030 176 ATIVSMLAAAYMRVFLKD 193 (273)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~ 193 (273)
.+++.++..+...+ +++
T Consensus 374 ~~~~~~~~~~~~~~-~~~ 390 (399)
T PRK05122 374 AALAALLGLALTWL-LYR 390 (399)
T ss_pred HHHHHHHHHHHHHH-hcc
Confidence 87777766655443 444
No 104
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.61 E-value=3.4e-14 Score=122.62 Aligned_cols=163 Identities=12% Similarity=0.037 Sum_probs=124.5
Q ss_pred HHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccC
Q 024030 24 TMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRS 103 (273)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~ 103 (273)
........|.|..+... +.+.+..+.|.+.++..++..++.++.|+++||+|+|+.+..+.++..++..+..+.++
T Consensus 239 ~~~~~~~~~~~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~ 314 (420)
T PRK09528 239 YDVFDQQFPNFFASFFA----TPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATG 314 (420)
T ss_pred HHHHHHHHHHHHHHHHh----ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhccc
Confidence 33344456777665421 11334456788889889999999999999999999999999888888888777777777
Q ss_pred chhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHH-HHHHHHHHHHHHHHHHHHh----hhHHHHHHHHH
Q 024030 104 ISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGI-LLGVLSASFVCGTLAARFL----STTSAFQAATI 178 (273)
Q Consensus 104 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~gp~~~~~l----~~~~~~~~~~~ 178 (273)
.+.+...+++.|+ ..+...+....++.|.+|++.|++..+. .+....+|..++|.+.|++ ||+.+|...++
T Consensus 315 ---~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~ 390 (420)
T PRK09528 315 ---PLEVSILKLLHAF-EVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGG 390 (420)
T ss_pred ---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHH
Confidence 6777788888887 5555556677889999999988887665 5777889999999998887 78889998888
Q ss_pred HHHHHHHHHHHHhcCC
Q 024030 179 VSMLAAAYMRVFLKDD 194 (273)
Q Consensus 179 ~~~~~~~~~~~~~~~~ 194 (273)
+.++..++..+..+++
T Consensus 391 ~~~i~~~~~~~~~~~~ 406 (420)
T PRK09528 391 IVLLFTLISVFTLSGD 406 (420)
T ss_pred HHHHHHHHHHHHhcCC
Confidence 7776666655555543
No 105
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.61 E-value=1.5e-13 Score=118.00 Aligned_cols=158 Identities=19% Similarity=0.153 Sum_probs=115.9
Q ss_pred HHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHH
Q 024030 17 VFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLA 96 (273)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~ 96 (273)
.+......+....++|.+.++. +.+....|...+...++..+++++.|+++||+|||+.+..+.+...++..
T Consensus 229 ~~~~~~~~~~~~~~~p~~~~~~--------g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~ 300 (406)
T PRK11551 229 YFFTLIVLYFLLNWLPSLLVGQ--------GLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLA 300 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC--------CCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3333444455566788887653 44555678888888999999999999999999999998887666666666
Q ss_pred HHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhHH
Q 024030 97 ILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL-----STTS 171 (273)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l-----~~~~ 171 (273)
.....++ .+.+.+..++.|+ ..+...+...++..|.+|+++|+++.|+.+....+|..+||.++|.+ ++..
T Consensus 301 ~~~~~~~---~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~ 376 (406)
T PRK11551 301 ALAAAPS---FAGMLLAGFAAGL-FVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVG 376 (406)
T ss_pred HHHhcCc---HHHHHHHHHHHHH-HHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHH
Confidence 5555555 5556666677776 33344578888999999999999999999999999999999999987 3344
Q ss_pred HHHHHHHHHHHHHHH
Q 024030 172 AFQAATIVSMLAAAY 186 (273)
Q Consensus 172 ~~~~~~~~~~~~~~~ 186 (273)
.+.......++..+.
T Consensus 377 ~~~~~~~~~~~~~~~ 391 (406)
T PRK11551 377 VIGASIPVILVAALA 391 (406)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444444
No 106
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.59 E-value=2.3e-13 Score=116.48 Aligned_cols=163 Identities=15% Similarity=0.150 Sum_probs=115.1
Q ss_pred HHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHH
Q 024030 18 FLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAI 97 (273)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~ 97 (273)
+.............|.|+++.. +.+..+.|.+.+...++.+++.++.|+++||+|||+.+..+.....+....
T Consensus 226 ~~~~~~~~~~~~~~p~~l~~~~-------~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~ 298 (393)
T PRK15011 226 TLMWGTNSLYIINMPLFIINEL-------HLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAG 298 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 3333344455567888886632 444556677777777778888999999999999999887766555544444
Q ss_pred HHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHH
Q 024030 98 LAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----STTSAF 173 (273)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l----~~~~~~ 173 (273)
....++ .+..++.+++.++ ..+...+....+..|..|+ +|++++++.+...++|..+||.++|.+ +|+..|
T Consensus 299 ~~~~~~---~~~~l~~~~l~~~-~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~ 373 (393)
T PRK15011 299 MLMAHS---PAILLGLQLLNAI-YIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVF 373 (393)
T ss_pred HHHHhh---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 444444 5666667777665 4455545667778898885 589999999888999999999998886 677788
Q ss_pred HHHHHHHHHHHHHHHHHhcC
Q 024030 174 QAATIVSMLAAAYMRVFLKD 193 (273)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~ 193 (273)
.+..+..++..+. .+..||
T Consensus 374 ~~~~~~~~~~~~~-~~~~~~ 392 (393)
T PRK15011 374 WFALVMIIATLFC-LLRIKD 392 (393)
T ss_pred HHHHHHHHHHHHH-HHhhcC
Confidence 7776666665555 445554
No 107
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=99.58 E-value=2.4e-13 Score=114.44 Aligned_cols=229 Identities=17% Similarity=0.126 Sum_probs=131.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhh
Q 024030 5 KEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAML 84 (273)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~ 84 (273)
.+++.++......+...+......|+.|.++++. .+++..++|.+.++..+..++.+|+.|.++||.|.||-+
T Consensus 4 ~~~~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~-------~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~L 76 (412)
T PF01306_consen 4 FKNKNYWWLSLFYFFYFFIWGIFLPFFPIWLTQV-------AGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHL 76 (412)
T ss_dssp CHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHH
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHccc-------cCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHH
Confidence 3466777777777777888899999999999762 388899999999999999999999999999999988765
Q ss_pred HHHHHHHHH--H-HHHHHhccC--chhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHH
Q 024030 85 TLPLTLSII--P-LAILAYRRS--ISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVC 159 (273)
Q Consensus 85 ~~~~~~~~~--~-~~~~~~~~~--~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~ 159 (273)
+.......+ + .....+.+- .+.+...++..+..|++..+.. +...+++.+.. ++.+.-.|-.....++|.++
T Consensus 77 l~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~-~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai 153 (412)
T PF01306_consen 77 LWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGV-PLSEAYAERVS--RRNGFEYGRARMWGSIGFAI 153 (412)
T ss_dssp HHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHH-HHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc-hHHHHHHHHHH--HHhcCCcchHHHHhhHHHHH
Confidence 544332222 2 122222111 0101222333333454233333 67777776664 33444556667788889889
Q ss_pred HHHHHHHh---hhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchHH
Q 024030 160 GTLAARFL---STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIR 236 (273)
Q Consensus 160 gp~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (273)
+..++|.+ +.+..|++.....++..++.....|+.+++.+.++ .+ . .+++..+.+
T Consensus 154 ~s~~~G~L~~i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~------------------~~-~---~~~~~~~~~ 211 (412)
T PF01306_consen 154 ASLLAGILFNINPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVAD------------------AL-G---AKKDKVSLK 211 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SST------------------TS-S---S------HH
T ss_pred HHHHhheeeeeCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhc------------------cc-c---cCCCCCcHH
Confidence 98888887 44566776555444444432333333222221110 00 0 011111233
Q ss_pred HHHHHHhhcchhHHHHHHHHHhccccccce
Q 024030 237 DLICLLRSSVTLSQAAVVAFFSGLSEGGMQ 266 (273)
Q Consensus 237 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 266 (273)
+ ...++|+|++|.+.+........+..++
T Consensus 212 ~-~~~l~k~~~fw~~~l~v~g~~~~Y~vfd 240 (412)
T PF01306_consen 212 D-VLSLFKMRNFWFFVLFVIGVAAIYDVFD 240 (412)
T ss_dssp H-HHHHTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred H-HHHHhcchhHHHHHHHHHHHHHHHHHHH
Confidence 3 2237789999988876655554444443
No 108
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=99.58 E-value=2.9e-14 Score=118.77 Aligned_cols=181 Identities=14% Similarity=0.179 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHH
Q 024030 15 VTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIP 94 (273)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~ 94 (273)
.+.+......+.+....|.+-....+.....-+.+.-..+.+..+..++.+++++++|++.||+|||+++....++.+++
T Consensus 48 ~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~ 127 (538)
T KOG0252|consen 48 MGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIIC 127 (538)
T ss_pred hhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHH
Confidence 34444555555555555555443322222223355566788888999999999999999999999999999999999999
Q ss_pred HHHHHhccCc----hhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh---
Q 024030 95 LAILAYRRSI----SFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL--- 167 (273)
Q Consensus 95 ~~~~~~~~~~----~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l--- 167 (273)
.++++..... ...+++...|++.|+ +-|.-+|.+.+..+|...++.||...+.....++.|...|.+++-.+
T Consensus 128 t~~~~~s~~~~~~~~~m~~L~~~R~~LGi-GIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~ 206 (538)
T KOG0252|consen 128 SALSGLSVGTTSPLGVMMTLCFFRFLLGI-GIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAI 206 (538)
T ss_pred HHHhccCCCCCCCcchhhHHHHHHHHhhc-cccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHH
Confidence 8876654332 235788899999999 55666699999999999999999988887777776666555444332
Q ss_pred ----------------hhHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 024030 168 ----------------STTSAFQAATIVSMLAAAYMRVFLKDDVPN 197 (273)
Q Consensus 168 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (273)
-||..+.+.++..+.. +..-+.+||+++-
T Consensus 207 fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~-ly~Rl~M~Et~~Y 251 (538)
T KOG0252|consen 207 FEKIFNGPSTYPHLDGVWRIIFGLGAVPALLV-LYFRLKMPETARY 251 (538)
T ss_pred HhccCCCCCCchHHHHHHHHHHHHHHHHHHHH-HHhhhcCCcchhH
Confidence 2666665554443333 3325567887653
No 109
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.58 E-value=2.9e-13 Score=118.44 Aligned_cols=167 Identities=14% Similarity=0.050 Sum_probs=114.6
Q ss_pred hhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHH
Q 024030 9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL 88 (273)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~ 88 (273)
.++...+..++..........++|.|+++. .+.+..+.++..+...++..++.++.|+++||+|||+.+....
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~-------~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~ 331 (467)
T PRK09556 259 VIWLLCFANIFLYIVRIGIDNWSPVYAFQE-------LGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACI 331 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHH
Confidence 445555555555555566778999998663 2555566788888889999999999999999999998776554
Q ss_pred HHHHHHHHHHH--hccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHH-HHHHHHHHHH
Q 024030 89 TLSIIPLAILA--YRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSA-SFVCGTLAAR 165 (273)
Q Consensus 89 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~gp~~~~ 165 (273)
....++..... ..++ .+...+.+++.|++..+.. ........|.+|++.|+++.|+.+...++ |..++|.+.|
T Consensus 332 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~G~~~~~~~-~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G 407 (467)
T PRK09556 332 ALALIIFTLGVYQHATS---EYMYLASLFALGFLVFGPQ-LLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLG 407 (467)
T ss_pred HHHHHHHHHHHHHhcCc---HHHHHHHHHHHHHHHhhHH-HHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHH
Confidence 44333322222 2223 4555566777775333332 23346777999999999999999998886 6688887776
Q ss_pred Hh-h---------------hHHHHHHHHHHHHHHHHH
Q 024030 166 FL-S---------------TTSAFQAATIVSMLAAAY 186 (273)
Q Consensus 166 ~l-~---------------~~~~~~~~~~~~~~~~~~ 186 (273)
.+ + |+..|.+..+..+++.+.
T Consensus 408 ~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 444 (467)
T PRK09556 408 MIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICL 444 (467)
T ss_pred HHhcccccccccccccccChHHHHHHHHHHHHHHHHH
Confidence 65 3 677787776666655444
No 110
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.58 E-value=2.8e-13 Score=119.36 Aligned_cols=143 Identities=14% Similarity=0.105 Sum_probs=103.6
Q ss_pred HHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccCchh
Q 024030 27 VVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISF 106 (273)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (273)
...++|.|+++. .+.+....|.+.+...++..++.++.|+++||+|||+++..+..+..+.........+. .
T Consensus 294 ~~~~lp~~l~~~-------~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~-~ 365 (496)
T PRK03893 294 IQALLPTYLKTD-------LGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGA-N 365 (496)
T ss_pred HHHHHHHHHHhh-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccc-H
Confidence 456889998542 25566778899999999999999999999999999999887776655554433333221 1
Q ss_pred HHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHH
Q 024030 107 FYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----STTSAFQAATI 178 (273)
Q Consensus 107 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l----~~~~~~~~~~~ 178 (273)
.+......++.+..+.+. .+...+++.|.+|+++|++++|+.+....+|..+||.++|.+ +++..+...+.
T Consensus 366 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~ 440 (496)
T PRK03893 366 VWVLGLLLFFQQMLGQGI-SGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSF 440 (496)
T ss_pred HHHHHHHHHHHHHHhccc-chhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHH
Confidence 333434444444323333 356778899999999999999999999999999999999887 55655554443
No 111
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.57 E-value=8.5e-14 Score=121.27 Aligned_cols=165 Identities=14% Similarity=0.139 Sum_probs=120.8
Q ss_pred hhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhh--CCchhhHH
Q 024030 9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQY--GRKAMLTL 86 (273)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~--grr~~~~~ 86 (273)
.++......++...+......++|.|.++. +.+....|++.++..++.++++++.|+++||. ++|+....
T Consensus 242 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~--------g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~ 313 (455)
T TIGR00892 242 GFLVYLSGNVIMFLGFFAPIIFLVPYAKDK--------GVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLF 313 (455)
T ss_pred hHHHHHHHHHHHHHHccchHHHHHHHHHHc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHH
Confidence 344445555555566666677888887653 55567778888999999999999999999984 33433333
Q ss_pred --HHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 024030 87 --PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAA 164 (273)
Q Consensus 87 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~ 164 (273)
+.+...++.++....++ .+.+++.+++.|+ +.+...+...+.+.|.+|++++++++|+.+...++|..+||.++
T Consensus 314 ~~~~~~~~l~~ll~~~~~~---~~~~~i~~~~~G~-~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~ 389 (455)
T TIGR00892 314 SFALLFNGLTHLLCALAGD---YTGLVIYCIFFGL-SFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLA 389 (455)
T ss_pred HHHHHHHHHHHHHHHHhch---HHHHHHHHHHHHH-HhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccce
Confidence 33333333444445555 6777888889998 55666678889999999999999999999999999999999999
Q ss_pred HHh-----hhHHHHHHHHHHHHHHHH
Q 024030 165 RFL-----STTSAFQAATIVSMLAAA 185 (273)
Q Consensus 165 ~~l-----~~~~~~~~~~~~~~~~~~ 185 (273)
|.+ +|+..|++.+++.++..+
T Consensus 390 G~l~~~~g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 390 GRLVDATKNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred eeeehhcCCcchHHHHhhHHHHHHHH
Confidence 876 477888877766554433
No 112
>PRK12382 putative transporter; Provisional
Probab=99.57 E-value=9.5e-13 Score=112.58 Aligned_cols=158 Identities=17% Similarity=0.175 Sum_probs=121.5
Q ss_pred HHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHH
Q 024030 20 WGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILA 99 (273)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~ 99 (273)
...+......+.|.|.++. +.+ ..++....+.++..+++++.|++.||+|+|+.+..+..+..++..+..
T Consensus 228 ~~~~~~~~~~~~~~~~~~~--------~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~ 297 (392)
T PRK12382 228 QGVGFAVIGTFVSLYFASK--------GWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLW 297 (392)
T ss_pred HHHHHhHHHHHHHHHHHhc--------CCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHH
Confidence 3344555666777777652 111 134455667778889999999999999999999988888888777776
Q ss_pred hccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHH
Q 024030 100 YRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----STTSAFQA 175 (273)
Q Consensus 100 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l----~~~~~~~~ 175 (273)
+.++ .+...+..++.|+ +.+...+...+.+.|..|+++|+++.|+.+....+|..+||.+.+.+ +|+..|.+
T Consensus 298 ~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~ 373 (392)
T PRK12382 298 LAPT---AWVALAGAALTGA-GCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLA 373 (392)
T ss_pred Hccc---HHHHHHHHHHHHH-HHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence 6665 6667777888887 55555577788889999999999999999999999999999998876 78888888
Q ss_pred HHHHHHHHHHHHHHHh
Q 024030 176 ATIVSMLAAAYMRVFL 191 (273)
Q Consensus 176 ~~~~~~~~~~~~~~~~ 191 (273)
.+.+.++..++..+..
T Consensus 374 ~~~~~~~~~~~~~~~~ 389 (392)
T PRK12382 374 GAISAVLGIIVTILSF 389 (392)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 8877777666644443
No 113
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.56 E-value=4.4e-13 Score=112.21 Aligned_cols=167 Identities=23% Similarity=0.247 Sum_probs=138.0
Q ss_pred hhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCch-hhHHH
Q 024030 9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKA-MLTLP 87 (273)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~-~~~~~ 87 (273)
.++......+.............|.+.++.. +.+..+.+...+...++..++.++.|++.||+|||+ .+..+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 248 (352)
T cd06174 176 LLLLLALAFFLLSFGYYGLLTYLPLYLQEVL-------GLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIG 248 (352)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3444455556666667777788888886632 345567788889999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024030 88 LTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL 167 (273)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l 167 (273)
.....++.......++ .+...+..++.|+ +.+...+...+++.|..|+++|++.+|+.+...++|..++|.+.+.+
T Consensus 249 ~~~~~i~~~~~~~~~~---~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l 324 (352)
T cd06174 249 LLLAALGLLLLALAPS---LALLLVALLLLGF-GLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLL 324 (352)
T ss_pred HHHHHHHHHHHHHhcc---HHHHHHHHHHHHH-HHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988888888888777 7778888888898 55666689999999999999999999999999999999999999877
Q ss_pred ----hhHHHHHHHHHHHHHHHHH
Q 024030 168 ----STTSAFQAATIVSMLAAAY 186 (273)
Q Consensus 168 ----~~~~~~~~~~~~~~~~~~~ 186 (273)
+|+..+.+.+++.++..+.
T Consensus 325 ~~~~~~~~~~~~~~~~~~i~~i~ 347 (352)
T cd06174 325 LDTGGYGGVFLILAALALLAALL 347 (352)
T ss_pred hcccCcchHHHHHHHHHHHHHHH
Confidence 6788888887777766554
No 114
>PRK09669 putative symporter YagG; Provisional
Probab=99.56 E-value=5.8e-13 Score=115.81 Aligned_cols=210 Identities=12% Similarity=-0.010 Sum_probs=132.4
Q ss_pred HHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhh----hCCchhhH-HHHHH
Q 024030 16 TVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQ----YGRKAMLT-LPLTL 90 (273)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr----~grr~~~~-~~~~~ 90 (273)
+.+...........+++.|+.|. .+++...+|.+.++..+...+..|+.|.++|| +||||.++ .+.+.
T Consensus 17 g~~~~~~~~~~~~~~l~~~~t~~-------~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~ 89 (444)
T PRK09669 17 GDTACNLVWQTVMLFLAYFYTDV-------FGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIP 89 (444)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHH
Confidence 33434444555667788887653 47888899999999999999999999999998 78866555 56566
Q ss_pred HHHHHHHHHhccC---chhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcC-ChhhHHHHHHHHHHHHHHHHHHHHHHH--
Q 024030 91 SIIPLAILAYRRS---ISFFYAYYALRTLTAMVCEGSINCLALAYVADNI-SERQRASAFGILLGVLSASFVCGTLAA-- 164 (273)
Q Consensus 91 ~~~~~~~~~~~~~---~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~gp~~~-- 164 (273)
.+++..+....++ ....+..++..++.+. .......+..++.+|+. ++++|++..+.......+|..+++.+.
T Consensus 90 ~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~~~-~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~p 168 (444)
T PRK09669 90 FGVVCLLTFYTPDFGATGKIIYACVTYILLSL-VYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALP 168 (444)
T ss_pred HHHHHHHHHhCCCCCcchHHHHHHHHHHHHHH-HHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665554444432 1223445555555554 33345567778999987 568899888888777777766665432
Q ss_pred --HHh-------hhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchH
Q 024030 165 --RFL-------STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSI 235 (273)
Q Consensus 165 --~~l-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (273)
..+ +|+..+.+.+++.++..++.++..+|..+++++ + ..+.
T Consensus 169 l~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~~~~~~~--------------------------~----~~~~ 218 (444)
T PRK09669 169 LVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFMTKERYTPEVD--------------------------N----SSSV 218 (444)
T ss_pred HHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCCeEEecCCCCc--------------------------C----CCCH
Confidence 222 455555555555555444433334442111100 0 0133
Q ss_pred HHHHHHHhhcchhHHHHHHHHHhccccc
Q 024030 236 RDLICLLRSSVTLSQAAVVAFFSGLSEG 263 (273)
Q Consensus 236 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 263 (273)
++.++.++|||.++.+++..++...+..
T Consensus 219 ~~~~~~~~~n~~~~~l~~~~~~~~~~~~ 246 (444)
T PRK09669 219 WKDLKLLLGNSQWRIMFIFNVVLLTAVV 246 (444)
T ss_pred HHHHHHHhCCchHHHHHHHHHHHHHHHH
Confidence 4455567889999988877776655543
No 115
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.55 E-value=3.1e-13 Score=114.34 Aligned_cols=164 Identities=16% Similarity=0.209 Sum_probs=117.5
Q ss_pred hHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHH
Q 024030 10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLT 89 (273)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~ 89 (273)
++......+.............+.+.++. +.+....+.+.+...++..+++++.|+++||+|||+.+..+..
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~ 278 (377)
T TIGR00890 207 FWVLYLSFFLNAVSGLLLIGLYKPYGQSL--------GLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFG 278 (377)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 33333333433344444445556665442 3344566788888999999999999999999999999988888
Q ss_pred HHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh--
Q 024030 90 LSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL-- 167 (273)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l-- 167 (273)
...++.....+.++.. .+.++...++.|+ ..+...+...+++.|.+|+++|+++.|+.+....+|..++|.+.+.+
T Consensus 279 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~-~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 356 (377)
T TIGR00890 279 ISAVGMAAMLFIPMLN-DVLFLATVALVFF-TWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALT 356 (377)
T ss_pred HHHHHHHHHHHcccch-hHHHHHHHHHHHH-HhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888777666655421 2333444556665 33444467778899999999999999999999999999999988876
Q ss_pred --hhHHHHHHHHHHHHHH
Q 024030 168 --STTSAFQAATIVSMLA 183 (273)
Q Consensus 168 --~~~~~~~~~~~~~~~~ 183 (273)
+|+..|.+.+++.+++
T Consensus 357 ~~g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 357 EIGFEYTFIVTGAFALTS 374 (377)
T ss_pred hhchhhHHHHHHHHHHHh
Confidence 6788887776655543
No 116
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=99.55 E-value=8.6e-13 Score=115.99 Aligned_cols=134 Identities=19% Similarity=0.212 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHH
Q 024030 54 GFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYV 133 (273)
Q Consensus 54 g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~ 133 (273)
.|+.+...++..++.++.|+++|.+|||..++.+.++..++.++.+.+++ ...++....+.|+ +.|.. ......+
T Consensus 81 ~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~---~~~~iag~~l~Gv-gaG~~-~~~~~~i 155 (599)
T PF06609_consen 81 SWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQN---MNTFIAGMVLYGV-GAGVQ-ELAALAI 155 (599)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCc---HHHHHHHHHHHHH-hhHHH-HHHHHHH
Confidence 55666778899999999999999999999999999999999999999999 8889999999998 55655 3566678
Q ss_pred HhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHHHHHHHhc
Q 024030 134 ADNISERQRASAFGILLGVLSASFVCGTLAARFL----STTSAFQAATIVSMLAAAYMRVFLK 192 (273)
Q Consensus 134 ~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l----~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (273)
+|..|.+.|..+.++.....-+....+|.++..+ +|||.|++..+...+.+++..++..
T Consensus 156 sEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~fY~ 218 (599)
T PF06609_consen 156 SELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFFYF 218 (599)
T ss_pred HHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999998887777665555555677777655 8999999998887776665454443
No 117
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.55 E-value=1.6e-12 Score=111.23 Aligned_cols=178 Identities=12% Similarity=0.049 Sum_probs=123.5
Q ss_pred hhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHH
Q 024030 9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL 88 (273)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~ 88 (273)
..+......++...+......++|.++++. +.+....|...+.+.++..+++++.|++.||+|||+.+..+.
T Consensus 206 ~~~~l~~~~~~~~~~~~~~~~~lp~~l~~~--------g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~ 277 (393)
T PRK09705 206 RAWTLGVYFGLINGGYASLIAWLPAFYIEI--------GASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLAL 277 (393)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--------CCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH
Confidence 344444444455566667778899998653 455567788889999999999999999999999999988887
Q ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024030 89 TLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNI-SERQRASAFGILLGVLSASFVCGTLAARFL 167 (273)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l 167 (273)
.+..++..++...+.. ...+. ..+.|+ +.+...+.......+.. |+++|++..|+.+....++..++|.+.+++
T Consensus 278 ~l~~~~~~~~~~~~~~--~~~~~--~~l~g~-g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l 352 (393)
T PRK09705 278 VLQLVGFCGFIWLPLQ--LPVLW--AMVCGL-GLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVL 352 (393)
T ss_pred HHHHHHHHHHHHccch--HHHHH--HHHHHH-hccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766666554433331 12222 234455 33334456666666666 467899999999999999999999999988
Q ss_pred -----hhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 024030 168 -----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDD 199 (273)
Q Consensus 168 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (273)
++...|.+.++..++..+......||++.++.
T Consensus 353 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (393)
T PRK09705 353 RSISGNYLMDWAFHALCVVGLMIITLRFAPARFPQLW 389 (393)
T ss_pred HHHhCCchHHHHHHHHHHHHHHHHHHHhccccccchh
Confidence 24566667666666665555556666654443
No 118
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=99.55 E-value=1.8e-13 Score=116.61 Aligned_cols=186 Identities=18% Similarity=0.203 Sum_probs=149.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCC-chhh
Q 024030 6 EIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGR-KAML 84 (273)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~gr-r~~~ 84 (273)
.+|.++...+..++.....+.+.+-.-.|.++. +.+.+....|++.+...++.++.+|.+|.++.|.+. |+++
T Consensus 32 ~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~l------D~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pl 105 (488)
T KOG2325|consen 32 NWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKL------DPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPL 105 (488)
T ss_pred chHhHHHHHHHHHHHhhhheEEEeecchhhhhc------CCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCH
Confidence 467788888888998888888888888888662 224445677999999999999999999999999997 8888
Q ss_pred HHHHHHHHHHHHHH-Hh--ccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHH
Q 024030 85 TLPLTLSIIPLAIL-AY--RRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGT 161 (273)
Q Consensus 85 ~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp 161 (273)
+.+.+..+++.+++ .+ .++. ..++++++|++.|+ +.+.. +...+|+++....++|.++++....+..+|..+||
T Consensus 106 i~s~ii~~~g~llY~~l~~~~~~-~~y~mL~~R~l~Gv-g~~n~-a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp 182 (488)
T KOG2325|consen 106 IVSFLIAIIGNLLYLALAYVPNG-VKYLMLVARILTGV-GVGNF-AVLRAYIADASTVEDRPRAFAATSGGFVLGIILGP 182 (488)
T ss_pred HHHHHHHHHHHHHHHHHHhcccc-hHHHHHHHHHHcCc-CcccH-HHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhH
Confidence 99999999998887 32 2221 47899999999998 55555 78999999998889999999999888888888888
Q ss_pred HHHHHh------h-----------hHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 024030 162 LAARFL------S-----------TTSAFQAATIVSMLAAAYMRVFLKDDVPNDDD 200 (273)
Q Consensus 162 ~~~~~l------~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (273)
.+...+ | +..+-++.+++.++.+++..++++|..++..+
T Consensus 183 ~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~ 238 (488)
T KOG2325|consen 183 TIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIID 238 (488)
T ss_pred HHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCccc
Confidence 776554 1 14567788888888888878888887665544
No 119
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.54 E-value=8.2e-13 Score=112.06 Aligned_cols=165 Identities=17% Similarity=0.219 Sum_probs=117.1
Q ss_pred hHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHH
Q 024030 10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLT 89 (273)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~ 89 (273)
++......++...........+|.++++.. +.+..+.|++.........++.++.|++.||+|||+.+..+.+
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~ 273 (375)
T TIGR00899 201 TRLLFVACTLMWGCNILYIINMPLLIIHEL-------GLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAAL 273 (375)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHc-------CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHH
Confidence 333333333333334445566788875532 3444566777777677778888999999999999998887776
Q ss_pred HHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh--
Q 024030 90 LSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL-- 167 (273)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l-- 167 (273)
...+........++ .+.+.+.+++.|+ +.+...+...++..|..|+ ++++++++.+...++|..++|.+++.+
T Consensus 274 ~~~~~~~~~~~~~~---~~~~~~~~~~~g~-~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~ 348 (375)
T TIGR00899 274 AGVAFYTGLAADNS---LWALLMLQLLNAI-FIGILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAE 348 (375)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65555444444444 5666677788887 4555557788888998875 567999999999999999999998876
Q ss_pred --hhHHHHHHHHHHHHHHHHH
Q 024030 168 --STTSAFQAATIVSMLAAAY 186 (273)
Q Consensus 168 --~~~~~~~~~~~~~~~~~~~ 186 (273)
+|+..|.+.++..++..+.
T Consensus 349 ~~g~~~~~~~~~~~~~~~~~~ 369 (375)
T TIGR00899 349 RWSYHAVYWFAIVMLIVALFC 369 (375)
T ss_pred hccchhHHHHHHHHHHHHHHH
Confidence 6788888877776665555
No 120
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.54 E-value=1.6e-12 Score=110.76 Aligned_cols=165 Identities=15% Similarity=0.093 Sum_probs=132.6
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHH
Q 024030 7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL 86 (273)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~ 86 (273)
+|.++...+..++...+......+.|.|++|. +.+....|.+.+...++..+..++.+++.||+|+|+.+.+
T Consensus 204 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~--------g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~ 275 (382)
T TIGR00902 204 NPMNLRFLAAVCLIQGAHAAYYGFSAIYWQAA--------GISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLI 275 (382)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHH
Confidence 34455556666666677777888999998653 5566777888888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHH-HHHHHHHHHHHHHHH
Q 024030 87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILL-GVLSASFVCGTLAAR 165 (273)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~gp~~~~ 165 (273)
+.+...+....+.+.++ .+.+++..++.|+ ..+...+....++.+. |+++|+++.++++ ...++|..+||.++|
T Consensus 276 ~~~~~~~~~~~~~~~~~---~~~~~~~q~l~g~-~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G 350 (382)
T TIGR00902 276 SAIACVGRWAIIGAIEA---FPLIFLLQILHCG-TFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAG 350 (382)
T ss_pred HHHHHHHHHHHHHhHhh---HHHHHHHHHHHHH-HHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888777 8888889999998 6677778889999998 9999999999986 577899999999999
Q ss_pred HhhhH---HHHHHHHHHHHHHH
Q 024030 166 FLSTT---SAFQAATIVSMLAA 184 (273)
Q Consensus 166 ~l~~~---~~~~~~~~~~~~~~ 184 (273)
.+..+ ..|...+++.+++.
T Consensus 351 ~l~~~~g~~~~~~~~~~~~~~~ 372 (382)
T TIGR00902 351 FIYPTLGAGTFVFMAIIAAAAF 372 (382)
T ss_pred HHHHhccHHHHHHHHHHHHHHH
Confidence 98322 34555555555443
No 121
>PF13347 MFS_2: MFS/sugar transport protein
Probab=99.53 E-value=1.3e-13 Score=119.28 Aligned_cols=219 Identities=14% Similarity=0.105 Sum_probs=148.0
Q ss_pred HHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhh----hhCCchhhH-HHHHHHH
Q 024030 18 FLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSD----QYGRKAMLT-LPLTLSI 92 (273)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~d----r~grr~~~~-~~~~~~~ 92 (273)
+...+.......+++.|+.|. .+.++...|.+..+..+...+..|+.|.++| |+||||.++ .+.+..+
T Consensus 11 ~~~~~~~~~~~~~~~~f~~~~-------~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~ 83 (428)
T PF13347_consen 11 LGYNMIWSLLSSYLLYFYTDV-------LGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLA 83 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHH
Confidence 333444444555677777553 3777789999999999999999999999999 899887766 5667777
Q ss_pred HHHHHHHhc-c-Cc---hhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCC-hhhHHHHHHHHHHHHHHHHHHHHHHHH-
Q 024030 93 IPLAILAYR-R-SI---SFFYAYYALRTLTAMVCEGSINCLALAYVADNIS-ERQRASAFGILLGVLSASFVCGTLAAR- 165 (273)
Q Consensus 93 ~~~~~~~~~-~-~~---~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~gp~~~~- 165 (273)
++..++... + +. ....++.+..++..+ +.........++.+|..+ +++|.+..+.-.....+|..+...+..
T Consensus 84 ~~~~llf~~~p~~~~~~~~~~~~~~~~~l~~~-~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~ 162 (428)
T PF13347_consen 84 LSFFLLFSPPPAGLSFTAKLVWLFVFYILFDI-AYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPI 162 (428)
T ss_pred HHHHHhhccccchhhhhhHHHHHHHHHHHHHH-hhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhh
Confidence 776666654 3 11 112334555555565 445555778889999987 578999999988888887754433333
Q ss_pred ---Hh-------hhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchH
Q 024030 166 ---FL-------STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSI 235 (273)
Q Consensus 166 ---~l-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (273)
.+ +|++...+.+++..+..++..+..||++++.++ .++..+.
T Consensus 163 l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~----------------------------~~~~~~~ 214 (428)
T PF13347_consen 163 LVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKERSVEVTE----------------------------QEKKISL 214 (428)
T ss_pred hhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeeeccccccc----------------------------ccccccc
Confidence 22 366667777777766666666667772111111 1111133
Q ss_pred HHHHHHHhhcchhHHHHHHHHHhccccccceeeeecc
Q 024030 236 RDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLVY 272 (273)
Q Consensus 236 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 272 (273)
++.++.++|||.++.+....++..++........++|
T Consensus 215 ~~~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~ 251 (428)
T PF13347_consen 215 RDSLRSLFRNRPFRILLLAFFLQWLAFALMNTFLPYY 251 (428)
T ss_pred ccchhhhcccchHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence 4445567889999999999999888888777666554
No 122
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.52 E-value=4.2e-12 Score=108.19 Aligned_cols=153 Identities=15% Similarity=0.136 Sum_probs=111.2
Q ss_pred HHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHH
Q 024030 17 VFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLA 96 (273)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~ 96 (273)
.+...........++|.|.++. +.+....|...+...++..+++++.|++.||+|+|+.+..+.....++..
T Consensus 209 ~~~~~~~~~~~~~~lp~~~~~~--------g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~ 280 (381)
T PRK03633 209 CIISGIVLGSLYGLMPLYLNHQ--------GMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSI 280 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc--------CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence 3333344445556788887653 44555678888888999999999999999999999998887777666554
Q ss_pred HHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHH
Q 024030 97 ILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----STTSA 172 (273)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l----~~~~~ 172 (273)
... .. +.......+.|+ +.+...|...+.+.|..|+++++...+..+...++|..+||.++|.+ ++++.
T Consensus 281 ~~~--~~----~~~~~~~~l~g~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~ 353 (381)
T PRK03633 281 AML--SQ----AAMAPALFILGA-AGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLL 353 (381)
T ss_pred HHh--hh----HHHHHHHHHHHH-HHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHH
Confidence 332 21 222344556665 33345588888899999988888888888888999999999999987 56777
Q ss_pred HHHHHHHHHHHH
Q 024030 173 FQAATIVSMLAA 184 (273)
Q Consensus 173 ~~~~~~~~~~~~ 184 (273)
|.+.+.+.++..
T Consensus 354 f~~~~~~~l~~~ 365 (381)
T PRK03633 354 FIMIASVSFIYL 365 (381)
T ss_pred HHHHHHHHHHHH
Confidence 777666555443
No 123
>PRK09952 shikimate transporter; Provisional
Probab=99.52 E-value=3.3e-12 Score=110.81 Aligned_cols=169 Identities=14% Similarity=0.109 Sum_probs=108.6
Q ss_pred HHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHH
Q 024030 17 VFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLA 96 (273)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~ 96 (273)
.+....+.+....+.|.|.++..+. +......+.....+...++.++.|+++||+|||+.+..+.++..++..
T Consensus 259 ~~~~~~~~~~~~~~~~~y~~~~~g~-------s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~ 331 (438)
T PRK09952 259 RLCELLTMYIVTAFALNYSTQNLGL-------PRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAF 331 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 3444556666778888888664322 222223333444566778889999999999999998877666555443
Q ss_pred HHHhc-cCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHH-HHHHHHHHHHHHHHHh------h
Q 024030 97 ILAYR-RSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLG-VLSASFVCGTLAARFL------S 168 (273)
Q Consensus 97 ~~~~~-~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~g~~~gp~~~~~l------~ 168 (273)
.+... ...+..+.+++..++.++ +.+...+...++++|.+|++.|+.+.++.+. +..+|+.++|.+.+.+ +
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~ 410 (438)
T PRK09952 332 PFFMALEAQSIFWIVFFSIMLANI-AHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGS 410 (438)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 33221 111113344444555565 4455557788999999999999999998654 4558899999998886 2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCC
Q 024030 169 TTSAFQAATIVSMLAAAYMRVFLKDD 194 (273)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (273)
|..++.+.++..++..+. .+..||+
T Consensus 411 ~~~~~~~~~~~~~i~~v~-~~~~~~~ 435 (438)
T PRK09952 411 WHSVAIYLLAGCLISAMT-ALLMKDN 435 (438)
T ss_pred chHHHHHHHHHHHHHHHH-HHHcccc
Confidence 566666665555555544 3445553
No 124
>PRK10504 putative transporter; Provisional
Probab=99.52 E-value=2.4e-12 Score=112.75 Aligned_cols=152 Identities=13% Similarity=0.167 Sum_probs=114.5
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHH
Q 024030 8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP 87 (273)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~ 87 (273)
+.+.......++...+........|.|.+... +.+....|+......++..++.++.|++.||+|||+++..+
T Consensus 261 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~ 333 (471)
T PRK10504 261 RTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGL-------GFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVAT 333 (471)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHH
Confidence 44555555566666666666667888876532 45556778888888888888999999999999999999988
Q ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024030 88 LTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL 167 (273)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l 167 (273)
..+..+...++.+....++.+.+.+..++.|+ +.+...+.......+..|+++++.++++.++...+|..+|+.+++.+
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~l 412 (471)
T PRK10504 334 TLGLALVSLLFMLVALLGWYYLLPFVLFLQGM-VNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLL 412 (471)
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777776665554322223444445566676 55566678888999999999999999999999999999999988876
No 125
>PRK03545 putative arabinose transporter; Provisional
Probab=99.52 E-value=2.4e-12 Score=110.00 Aligned_cols=170 Identities=12% Similarity=0.137 Sum_probs=116.0
Q ss_pred hHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHH
Q 024030 10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLT 89 (273)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~ 89 (273)
++......++..........++|.++++.. +.+....|++.+...++.++++++.|+++||+|||+... +..
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~ 278 (390)
T PRK03545 207 LVSLYLLTVVVVTAHFTAYSYIEPFVQQVA-------GLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIA 278 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHH
Confidence 333333333334444444566777776532 344456788888889999999999999999999886544 433
Q ss_pred HHHHHHHH-HHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-
Q 024030 90 LSIIPLAI-LAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL- 167 (273)
Q Consensus 90 ~~~~~~~~-~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l- 167 (273)
...++... ....++ .+.+.+..++.|+ +.+...+...+.+.+..| ++|++++|+.+....+|..+||+++|.+
T Consensus 279 ~~~~~~~~l~~~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~ 353 (390)
T PRK03545 279 LLLVCLLLLLPAANS---EWHLSVLSIFWGI-AIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVS 353 (390)
T ss_pred HHHHHHHHHHHHhch---HHHHHHHHHHHHH-HHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333332 233344 5666677777787 334334566777888776 6889999999999999999999999887
Q ss_pred ---hhHHHHHHHHHHHHHHHHHHHHHhc
Q 024030 168 ---STTSAFQAATIVSMLAAAYMRVFLK 192 (273)
Q Consensus 168 ---~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (273)
+++..|...+.+.+++.+..+...+
T Consensus 354 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 381 (390)
T PRK03545 354 LHLGLSSIGYVGAALALAALVWSILIFR 381 (390)
T ss_pred hccChhHHHHHHHHHHHHHHHHHHHHcc
Confidence 6788888888777776666555443
No 126
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=99.52 E-value=1.8e-11 Score=100.09 Aligned_cols=214 Identities=12% Similarity=0.059 Sum_probs=142.8
Q ss_pred HHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHH
Q 024030 17 VFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLA 96 (273)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~ 96 (273)
..+...+.....|++-..+++ .+.+..+++.+.........+..++.|.++||+|||+.-+..+++..++.+
T Consensus 43 Y~La~~aDWLQGpY~Y~LY~~--------yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl 114 (354)
T PF05631_consen 43 YLLAMAADWLQGPYLYALYES--------YGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL 114 (354)
T ss_pred HHHHHHHHHhhcchhHHHHHH--------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 334455566666665555443 256666788888888999999999999999999999998888888887765
Q ss_pred HHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHH-h----cCChhhHHHHHHHHH-HHHHHHHHHHHHHHHHh---
Q 024030 97 ILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVA-D----NISERQRASAFGILL-GVLSASFVCGTLAARFL--- 167 (273)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~-~----~~~~~~r~~~~~~~~-~~~~~g~~~gp~~~~~l--- 167 (273)
.-..++ ++.+++.|++.|+ +.....++..++.. | -+|++..+..++... ..+++-.+.+..++..+
T Consensus 115 -~k~~~~---~~~L~~GRvlgGi-aTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~ 189 (354)
T PF05631_consen 115 -TKHSSN---YPVLLLGRVLGGI-ATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADW 189 (354)
T ss_pred -HHhccc---cHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHH
Confidence 334566 8999999999998 66666677777662 2 345555555555444 23333333333444333
Q ss_pred ---hhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchHHHHHHHHhh
Q 024030 168 ---STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRS 244 (273)
Q Consensus 168 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 244 (273)
+...||....++.+++.+++....+|...+..+. .+..++.++..+.+.+
T Consensus 190 ~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~~~~~---------------------------~~~~~~~~~a~~~i~~ 242 (354)
T PF05631_consen 190 FGFGPVAPFDAAIVLLAVAAVLILKTWPENYGDTSSS---------------------------SSLSGSFREAWRAILS 242 (354)
T ss_pred hCCCCcchHHHHHHHHHHHHHHHHhcccccCCCcccc---------------------------cchHHHHHHHHHHHHc
Confidence 2367888887777777666555555543322110 1111255666677888
Q ss_pred cchhHHHHHHHHHhccccccceeeee
Q 024030 245 SVTLSQAAVVAFFSGLSEGGMQASFL 270 (273)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (273)
||+++.+.++..++-.+++.+...+.
T Consensus 243 d~ril~LG~~qslFE~smy~FVflWt 268 (354)
T PF05631_consen 243 DPRILLLGLIQSLFEGSMYLFVFLWT 268 (354)
T ss_pred CchhHHHHHHHHHHHHHHHHheeeee
Confidence 99999999998888777776655543
No 127
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=99.51 E-value=1.3e-12 Score=111.26 Aligned_cols=219 Identities=23% Similarity=0.308 Sum_probs=140.6
Q ss_pred HHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCC-chhhHHHHHHH
Q 024030 13 LFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGR-KAMLTLPLTLS 91 (273)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~gr-r~~~~~~~~~~ 91 (273)
+....++.........|++|.|+++. +.+..++|.+.+...+..+++++++|.++||.++ |+.+.++.+..
T Consensus 7 Ls~~~f~~f~~~G~~~p~~~~~L~~~--------G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~ 78 (400)
T PF03825_consen 7 LSLMYFLYFFAYGAFLPYLPLYLESR--------GFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLS 78 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHH
Confidence 34455666777788889999999764 6778899999999999999999999999999864 56666666666
Q ss_pred HHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHH-----HHHH
Q 024030 92 IIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTL-----AARF 166 (273)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~-----~~~~ 166 (273)
.+........++ ++.+++..++..+ ......|...++..+... ++++-.|-.....++|.+++.. +.+.
T Consensus 79 ~~~~~~~~~~~~---f~~~~~~~~l~~~-~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~ 152 (400)
T PF03825_consen 79 ALALLLLAFSSS---FWWLFVIMLLFSF-FFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGY 152 (400)
T ss_pred HHHHHHHHHhcc---HHHHHHHHHHHHH-HHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhh
Confidence 665555555556 6777777767666 334445788888877765 2334455555566666655533 2222
Q ss_pred hhh---HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchHHHHHHHHh
Q 024030 167 LST---TSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLR 243 (273)
Q Consensus 167 l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 243 (273)
.++ ...+++.+...++.... .+.+|+.+++++.+ +..++ +..++. ..+.
T Consensus 153 ~~~~~~~~~~~i~~~~~~ll~~~-~l~lp~~~~~~~~~-------------------------~~~~~-~~~~~~-~~ll 204 (400)
T PF03825_consen 153 LGISGTSLIFYIAAILSLLLAGF-ALFLPKTPPKRSAK-------------------------ESVKK-LLGLDA-LKLL 204 (400)
T ss_pred hccccccHHHHHHHHHHHHHHHH-HHhCCCCccccccC-------------------------CCccc-ccchHH-HHHh
Confidence 222 23445444443333322 44567665222221 00010 011122 2377
Q ss_pred hcchhHHHHHHHHHhccccccceeeeeccC
Q 024030 244 SSVTLSQAAVVAFFSGLSEGGMQASFLVYI 273 (273)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 273 (273)
|+|++....+..++.+......+++.+.|+
T Consensus 205 k~~~~~~Fll~~~l~~~~~~~~~~f~~~yl 234 (400)
T PF03825_consen 205 KNPRFLVFLLAAFLIGISHAAYYTFFSIYL 234 (400)
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999888888777777663
No 128
>PRK09848 glucuronide transporter; Provisional
Probab=99.51 E-value=3.2e-12 Score=111.29 Aligned_cols=220 Identities=14% Similarity=0.033 Sum_probs=128.7
Q ss_pred HHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhh----CCchhh-HHHH
Q 024030 14 FVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQY----GRKAML-TLPL 88 (273)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~----grr~~~-~~~~ 88 (273)
.+..+...+......++++.|+++. .+.+..++|.+.++..+...+..|+.|+++||. ||||.+ ..+.
T Consensus 14 g~g~~~~~~~~~~~~~~l~~y~~~~-------~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~ 86 (448)
T PRK09848 14 SLGDVANNFAFAMGALFLLSYYTDV-------AGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGT 86 (448)
T ss_pred ccchHHhHHHHHHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHH
Confidence 3455556666777778888888664 366778999999999999999999999999996 777755 4554
Q ss_pred HHHHHHHHHHHhcc----CchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCC-hhhHHHHHHHHHHH-----HHHHHH
Q 024030 89 TLSIIPLAILAYRR----SISFFYAYYALRTLTAMVCEGSINCLALAYVADNIS-ERQRASAFGILLGV-----LSASFV 158 (273)
Q Consensus 89 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~-----~~~g~~ 158 (273)
+...+...+....+ .....+..+....+.++ +.+...+...++..+..+ +++|.+..+.-..+ ..++..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~ 165 (448)
T PRK09848 87 APLMIFSVLVFWVPTDWSHSSKVVYAYLTYMGLGL-CYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFL 165 (448)
T ss_pred HHHHHHHHHHHhCcCCCCcchHHHHHHHHHHHHHH-HHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443333322111 11112333444455565 445555666777777654 46788876655443 334556
Q ss_pred HHHHHHHHhhh----HHHH--HHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCcccccccc
Q 024030 159 CGTLAARFLST----TSAF--QAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKI 232 (273)
Q Consensus 159 ~gp~~~~~l~~----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (273)
++|.+++..+. .+.. .+.+++..+..++.....||+.+++++ +
T Consensus 166 ~~p~i~~~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~e~~~~~~~-----------------------------~-- 214 (448)
T PRK09848 166 IGPSIKNSSPEEMVSVYHFWTIVLAIAGMVLYFICFKSTRENVVRIVA-----------------------------Q-- 214 (448)
T ss_pred HHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCcEeccCCCcc-----------------------------C--
Confidence 66776654321 1111 112222222222222223332111100 0
Q ss_pred chHHHHHHHHhhcchhHHHHHHHHHhccccccceeeeecc
Q 024030 233 PSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLVY 272 (273)
Q Consensus 233 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 272 (273)
++.++.++.++|||.++...+..++...++.......|+|
T Consensus 215 ~~~~~~~~~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~ 254 (448)
T PRK09848 215 PSLKISLQTLKRNRPLFMLCIGALCVLISTFAVSASSLFY 254 (448)
T ss_pred CCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhheee
Confidence 1334445568899999999888888887777766666655
No 129
>PRK03699 putative transporter; Provisional
Probab=99.50 E-value=1.6e-12 Score=111.28 Aligned_cols=167 Identities=8% Similarity=0.054 Sum_probs=120.5
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHH
Q 024030 8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP 87 (273)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~ 87 (273)
+.++...+..++...+.+....++|.|+++.. +.+..+.|.+.+.+.++..++.++.|+++||++||+.+...
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~-------g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~ 277 (394)
T PRK03699 205 IGVLFLAIAALLYILAQLTFISWVPEYAQKKF-------GMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVL 277 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------CCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHH
Confidence 34444455555555666677789999986632 45566778888888999999999999999999999988877
Q ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024030 88 LTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL 167 (273)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l 167 (273)
..+..+...+....++ .+.+.+..++.|+ ..+...+...++..|..| +++++..+.......+|..++|.+.|.+
T Consensus 278 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~G~-~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l 352 (394)
T PRK03699 278 AGLALVLMYLFVNTDD---PSHLLYAILGLGF-FSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPI 352 (394)
T ss_pred HHHHHHHHHHHHHcCC---chHHHHHHHHHHH-HHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 7666665555555555 4455556667776 444444667777777766 4467788888888899999999998887
Q ss_pred ----hhHHHHHHHHHHHHHHHHH
Q 024030 168 ----STTSAFQAATIVSMLAAAY 186 (273)
Q Consensus 168 ----~~~~~~~~~~~~~~~~~~~ 186 (273)
+++..++..+++..+..+.
T Consensus 353 ~~~~g~~~~~~~~~~~~~~~~~~ 375 (394)
T PRK03699 353 VAHFGLQAALLTANGLYAVVFVM 375 (394)
T ss_pred HHHhCchhhhhhhHHHHHHHHHH
Confidence 6677777766666555443
No 130
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=99.50 E-value=4.3e-13 Score=117.17 Aligned_cols=141 Identities=13% Similarity=0.145 Sum_probs=115.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccCchhHHHHHHH-HHHHhhhchhhH
Q 024030 47 SLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYAL-RTLTAMVCEGSI 125 (273)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~g~~~~~~~ 125 (273)
+.+..+.+++.++..-...+..|+.+.+.||+|.|++.+.|.++..++.++..++++ .|.+++. -++.|+ +.++.
T Consensus 77 ~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~---i~~l~lt~gvi~G~-G~~~~ 152 (509)
T KOG2504|consen 77 GSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATS---LWQLYLTFGVIGGL-GLGLI 152 (509)
T ss_pred CCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHhhc-cchhh
Confidence 334445788889999999999999999999999999999999999999999999998 7766654 566777 66777
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHHHHHHHhc
Q 024030 126 NCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----STTSAFQAATIVSMLAAAYMRVFLK 192 (273)
Q Consensus 126 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l----~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (273)
+......+..+++ ++|+.++|+...+.++|.++-|.+...+ |||..+++.+.+.+-.++......|
T Consensus 153 ~~paiviv~~YF~-kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp 222 (509)
T KOG2504|consen 153 YLPAVVILGTYFE-KKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRP 222 (509)
T ss_pred hcchhhhhhhHhH-HHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence 7788888888776 7899999999999999988887777665 9999999888777555555344334
No 131
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.50 E-value=9.7e-13 Score=114.82 Aligned_cols=162 Identities=13% Similarity=0.054 Sum_probs=111.8
Q ss_pred HhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHh---c
Q 024030 25 MMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAY---R 101 (273)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~---~ 101 (273)
.....+.|.+.++. +.+....++......++.+++.++.|+++||+|||+.+..+.++..++..++.+ .
T Consensus 301 ~~~~~~~~~~~~~~--------g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (481)
T TIGR00879 301 NAIMYYSPTIFENA--------GVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGAS 372 (481)
T ss_pred eehHHHHHHHHHHc--------CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33445666665442 333345577777788888999999999999999999998887777776655542 1
Q ss_pred cCch-----hHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHH
Q 024030 102 RSIS-----FFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----STTSA 172 (273)
Q Consensus 102 ~~~~-----~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l----~~~~~ 172 (273)
.... ....+....+..+. ......+....++.|.+|+++|++++++.+...++|..++|.+.+.+ +|++.
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~ 451 (481)
T TIGR00879 373 FVTGSSKSSGNVAIVFILLFIAF-FAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGV 451 (481)
T ss_pred ccCCcccchhHHHHHHHHHHHHH-HHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccce
Confidence 1110 12222222222222 22222356677889999999999999999999999999999887765 67888
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCC
Q 024030 173 FQAATIVSMLAAAYMRVFLKDDV 195 (273)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~ 195 (273)
|++.++++++..++..+..||++
T Consensus 452 f~~~~~~~~~~~i~~~~~~~~~~ 474 (481)
T TIGR00879 452 FIFFGGLNVLGLIFVYFFLPETK 474 (481)
T ss_pred ehhHHHHHHHHHHHHheecccCC
Confidence 88888887777766566666654
No 132
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.49 E-value=1.9e-11 Score=107.48 Aligned_cols=166 Identities=19% Similarity=0.199 Sum_probs=128.3
Q ss_pred hHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHH
Q 024030 10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLT 89 (273)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~ 89 (273)
+.......++..+........+|.+.++.. +.+....|++.++..+|.++++.+.+++.+|+++++.+..+.+
T Consensus 220 l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l-------~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~ 292 (524)
T PF05977_consen 220 LRSVLLRSFLFNLFASAVWALLPLFARDVL-------GGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASL 292 (524)
T ss_pred HHHHHHHHHHHHHhhhHHHHhhhHHHHHHh-------CCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHH
Confidence 333333333444444555667898886643 4556677999999999999999999999999999999988998
Q ss_pred HHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh--
Q 024030 90 LSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL-- 167 (273)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l-- 167 (273)
..+++.+.+++.++ .+..++..++.|+ +.....+...+.+.+..|++.|||+++++.+....+..+|..+.|.+
T Consensus 293 ~~a~~~~~lal~~~---~~~~~~~l~l~G~-~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~ 368 (524)
T PF05977_consen 293 LFALALLLLALSPS---FWLALIALFLAGA-AWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLAD 368 (524)
T ss_pred HHHHHHHHHhcchH---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888887 7888888888887 55556678889999999999999999999988888888888877776
Q ss_pred --hhHHHHHHHHHHHHHHHHH
Q 024030 168 --STTSAFQAATIVSMLAAAY 186 (273)
Q Consensus 168 --~~~~~~~~~~~~~~~~~~~ 186 (273)
+.+..+.+.++..++..++
T Consensus 369 ~~g~~~al~~a~~~lll~~~~ 389 (524)
T PF05977_consen 369 HFGVRTALLIAGAALLLSALI 389 (524)
T ss_pred HhCHHHHHHHHHHHHHHHHHH
Confidence 5566666665554444443
No 133
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=99.49 E-value=7.7e-12 Score=108.70 Aligned_cols=175 Identities=17% Similarity=0.217 Sum_probs=136.0
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCc--hhh
Q 024030 7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRK--AML 84 (273)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr--~~~ 84 (273)
.|.+...++..++..-+...+......|.++.+ +.+..+...+..+..+..++++.++|++.||+|.| +++
T Consensus 280 ~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~l-------g~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l 352 (477)
T PF11700_consen 280 LRQLFLFLIAYFLYSDGVNTIISFAGIYATEVL-------GMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTL 352 (477)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHH
Confidence 456666677777777777888888888886543 55555666667777888999999999999999999 888
Q ss_pred HHHHHHHHHHHHHHHh--------ccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHH
Q 024030 85 TLPLTLSIIPLAILAY--------RRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSAS 156 (273)
Q Consensus 85 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g 156 (273)
+.+.+...+..+.-.+ ..+ .+.+.+..++.|+ ..|..++.+.++.+++.|+++.++.+|++.......
T Consensus 353 ~~~l~~~~~i~~~g~~G~~~~~~g~~~---~~~f~~~a~~~G~-~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~s 428 (477)
T PF11700_consen 353 LISLILWIIIPLYGLFGFWPSFFGLKS---PWEFWVLAVLIGL-FMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKAS 428 (477)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccCccc---HHHHHHHHHHHHH-HhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHH
Confidence 8777766443333222 334 6778888889998 667777999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHHHHhcC
Q 024030 157 FVCGTLAARFL-----STTSAFQAATIVSMLAAAYMRVFLKD 193 (273)
Q Consensus 157 ~~~gp~~~~~l-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (273)
..+||++.+.+ +.|..+....++.++.+++ ...++.
T Consensus 429 s~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~l-l~~v~~ 469 (477)
T PF11700_consen 429 SWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLIL-LFFVDV 469 (477)
T ss_pred HHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH-Hhhccc
Confidence 99999999888 3577777777777766666 344444
No 134
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.48 E-value=4.6e-12 Score=110.40 Aligned_cols=174 Identities=12% Similarity=0.015 Sum_probs=108.9
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhh--CCchhhH
Q 024030 8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQY--GRKAMLT 85 (273)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~--grr~~~~ 85 (273)
+.++...+..++.....+....++|.|+++.. +.+....+.....+.++..++.++.|+++||+ |||+...
T Consensus 253 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~-------g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~ 325 (452)
T PRK11273 253 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVK-------HFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATG 325 (452)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHH
Confidence 33444555555555555667789999997632 34445667777788888899999999999999 4554322
Q ss_pred -HHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHH-HHHHH
Q 024030 86 -LPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFV-CGTLA 163 (273)
Q Consensus 86 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~gp~~ 163 (273)
....+..++...+......+ .+...+..++.|.+..+.. .....+..|.+|+++|++++|+.+....+|.. .+|.+
T Consensus 326 ~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v 403 (452)
T PRK11273 326 VFFMTLVTIATIVYWLNPAGN-PTVDMACMIVIGFLIYGPV-MLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAI 403 (452)
T ss_pred HHHHHHHHHHHHHHHHhcccC-hHHHHHHHHHHHHHHHhHH-HHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhh
Confidence 22222223322222222211 3333344444444221212 23345678999999999999999888888765 47888
Q ss_pred HHHh----hhHHHHHHHHHHHHHHHHHHHHH
Q 024030 164 ARFL----STTSAFQAATIVSMLAAAYMRVF 190 (273)
Q Consensus 164 ~~~l----~~~~~~~~~~~~~~~~~~~~~~~ 190 (273)
.+.+ +|+..|.+.++.++++.+.....
T Consensus 404 ~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~ 434 (452)
T PRK11273 404 VGYTVDFFGWDGGFMVMIGGSILAVILLIVV 434 (452)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 7776 67888888877776665554433
No 135
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.48 E-value=7.6e-12 Score=108.50 Aligned_cols=176 Identities=13% Similarity=0.020 Sum_probs=110.5
Q ss_pred hHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhh--CCchhh-HH
Q 024030 10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQY--GRKAML-TL 86 (273)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~--grr~~~-~~ 86 (273)
++...+..+...........++|.|+++. .+.+....+...+...++..++.++.|+++||+ ++|+.. ..
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-------~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~ 317 (434)
T PRK11663 245 IWLLSFSYVLVYVVRAAINDWGNLYMSET-------LGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLI 317 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------cCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHH
Confidence 34444444444555556667889998553 255556678888888999999999999999999 333332 22
Q ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024030 87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF 166 (273)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~ 166 (273)
..+...+........+..+ ........+..|++..+.. ........|..|+++|++++|+.+....+|..++|.+.+.
T Consensus 318 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~ 395 (434)
T PRK11663 318 FAAGILLSVGSLWLMPFAS-YVMQAACFFTIGFFVFGPQ-MLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAK 395 (434)
T ss_pred HHHHHHHHHHHHHHccccc-HHHHHHHHHHHHHHHhhHH-HHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHH
Confidence 2222222222212122211 2233333344444221211 2334567899999999999999999999999999988887
Q ss_pred h----hhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 024030 167 L----STTSAFQAATIVSMLAAAYMRVFLKDD 194 (273)
Q Consensus 167 l----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (273)
+ +|+..|...+++.++..+..++..++.
T Consensus 396 l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~ 427 (434)
T PRK11663 396 VLEIWHWTGFFVVISIAAGISALLLLPFLNAQ 427 (434)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 6 678888888777766665545445443
No 136
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.48 E-value=5.6e-12 Score=107.21 Aligned_cols=170 Identities=17% Similarity=0.180 Sum_probs=115.9
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchh--hH
Q 024030 8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAM--LT 85 (273)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~--~~ 85 (273)
+.++...+..++..........+.|.|+++.. +.+....+++.+...++..++.++.|+++||+|||+. ..
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 287 (399)
T TIGR00893 215 RRVWGLALGQFLVNIGLGFFLTWFPTYLVQER-------GLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVF 287 (399)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh-------cccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhH
Confidence 44555566666667777778888999986632 4455667888888899999999999999999999962 11
Q ss_pred HHHHHHHH---HHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHH
Q 024030 86 LPLTLSII---PLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTL 162 (273)
Q Consensus 86 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~ 162 (273)
........ ...........+..+.......+.+. +.+ ..+...+++.|.+|+++|+++.|+.+...++|..++|.
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~ 365 (399)
T TIGR00893 288 ARKTAIIAGLVLSLLMFATNYVNIPYAALALVALGFF-GLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPI 365 (399)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHh-chh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhH
Confidence 11111111 11111111111113333333333333 444 55889999999999999999999999999999999999
Q ss_pred HHHHh----h-hHHHHHHHHHHHHHHHHH
Q 024030 163 AARFL----S-TTSAFQAATIVSMLAAAY 186 (273)
Q Consensus 163 ~~~~l----~-~~~~~~~~~~~~~~~~~~ 186 (273)
+.+.+ + ++..+.+.+++.++..+.
T Consensus 366 i~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 394 (399)
T TIGR00893 366 VIGAIAATTGSFAGALMVVAALALIGALS 394 (399)
T ss_pred HhhhhccCCCchhHHHHHHHHHHHHHHHH
Confidence 99887 5 777887777766655544
No 137
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.48 E-value=1.1e-11 Score=106.53 Aligned_cols=171 Identities=8% Similarity=-0.069 Sum_probs=115.8
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhH-H
Q 024030 8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLT-L 86 (273)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~-~ 86 (273)
|.++...+..++...+.+....+.|.|.++. +.+..+.+.+.+...++..++.++.|+++||+|||+.+. .
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~--------g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~ 293 (402)
T TIGR00897 222 PNVLLGGMVRIINTIGLFGFAVFLPMFVAEL--------GFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWF 293 (402)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--------CCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHH
Confidence 3444445555555666677778899887552 444455677777888999999999999999999988764 3
Q ss_pred HHHHHHHHHHHHHhcc--CchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 024030 87 PLTLSIIPLAILAYRR--SISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAA 164 (273)
Q Consensus 87 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~ 164 (273)
+.+...+....+...+ ..+..+.+.+..++.|+ +.+... ...+...|..| ++|+++.|+.+....+|..++|.++
T Consensus 294 ~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~-~~~~~~-~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~ 370 (402)
T TIGR00897 294 GGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGI-FLAGYV-PLAAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIA 370 (402)
T ss_pred HHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHH-HHHHHH-HHHHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333322222111 11125566667777787 333343 34556677654 6899999999999999999999998
Q ss_pred HHh----hhHHHHHHHHHHHHHHHHHHHH
Q 024030 165 RFL----STTSAFQAATIVSMLAAAYMRV 189 (273)
Q Consensus 165 ~~l----~~~~~~~~~~~~~~~~~~~~~~ 189 (273)
+.+ ++...+++.++..++..++..+
T Consensus 371 g~l~~~~g~~~~~~~~a~~~~i~~~~~~~ 399 (402)
T TIGR00897 371 VLFIGFFGAIGVVWIFAALYVVSAFLTAF 399 (402)
T ss_pred HHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 877 6778888887777666655433
No 138
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.47 E-value=1.8e-12 Score=110.35 Aligned_cols=159 Identities=14% Similarity=0.055 Sum_probs=110.0
Q ss_pred hHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHH
Q 024030 10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLT 89 (273)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~ 89 (273)
++......+...........++|.|.++.. +.+....+.......++..++.++.|+++||+|||+.+..+..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~ 293 (394)
T TIGR00883 221 FLLGLGLVIATTTTFYLITTYLPTYLTQTL-------GLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTV 293 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence 444445555555666667788999986532 3444566777888889999999999999999999998775544
Q ss_pred HHHHHH-HHH-HhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 024030 90 LSIIPL-AIL-AYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGIL-LGVLSASFVCGTLAARF 166 (273)
Q Consensus 90 ~~~~~~-~~~-~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~~g~~~gp~~~~~ 166 (273)
+..+.. ... ....+ .+.+......++.|+ +.+...+...+++.|.+|+++|+++.++. +....+|..++|.+++.
T Consensus 294 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~ 371 (394)
T TIGR00883 294 LAALLAVPLLMALLDS-GSFTLFFFLVLGLAL-IGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAA 371 (394)
T ss_pred HHHHHHHHHHHHHhcC-CchHHHHHHHHHHHH-HHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHH
Confidence 333322 222 22211 125556666677776 45556688899999999999999999985 55667888899999988
Q ss_pred h----h-hHHHHHHHH
Q 024030 167 L----S-TTSAFQAAT 177 (273)
Q Consensus 167 l----~-~~~~~~~~~ 177 (273)
+ + |+..++...
T Consensus 372 l~~~~g~~~~~~~~~~ 387 (394)
T TIGR00883 372 LVAMTGDWYAIGYYLA 387 (394)
T ss_pred HHHHcCcchhHHHHHH
Confidence 7 3 555444443
No 139
>PRK11462 putative transporter; Provisional
Probab=99.45 E-value=2.8e-11 Score=105.54 Aligned_cols=141 Identities=12% Similarity=-0.063 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhh----hCCchhhH-HHHH
Q 024030 15 VTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQ----YGRKAMLT-LPLT 89 (273)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr----~grr~~~~-~~~~ 89 (273)
++.+...........++..|+.|. .++++..+|.+..+.-+--.+.-|+.|.++|| +||||..+ ++.+
T Consensus 16 ~g~~~~~~~~~~~~~~l~~fyt~~-------~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i 88 (460)
T PRK11462 16 MGDAASHIIFDNVMLYMMFFYTDI-------FGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGAL 88 (460)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHh-------hCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHH
Confidence 344444555666667788888664 37788899999999999999999999999996 68887766 5656
Q ss_pred HHHHHHHHHHhccCc---hhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCC-hhhHHHHHHHHHHHHHHHHHHHHHH
Q 024030 90 LSIIPLAILAYRRSI---SFFYAYYALRTLTAMVCEGSINCLALAYVADNIS-ERQRASAFGILLGVLSASFVCGTLA 163 (273)
Q Consensus 90 ~~~~~~~~~~~~~~~---~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~gp~~ 163 (273)
..+++..++...++. .....+.+..++... +.........++.+|..+ +++|++..+.-..+..+|..+++.+
T Consensus 89 ~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~~~-~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~ 165 (460)
T PRK11462 89 PFGIVCVLAYSTPDLSMNGKMIYAAITYTLLTL-LYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVL 165 (460)
T ss_pred HHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHH-HHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666555444421 113334445555555 445566788889999886 7899999999988888887666554
No 140
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=99.43 E-value=2.5e-12 Score=108.85 Aligned_cols=180 Identities=13% Similarity=0.086 Sum_probs=147.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhh-CCchhh
Q 024030 6 EIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQY-GRKAML 84 (273)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~ 84 (273)
..|.++.++..-+..-+++|.....+-.|+....+++ ++.+...+.-+.+.+.--.-+...++|+++||+ |+|+++
T Consensus 19 ~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~g---Lg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI 95 (498)
T COG3104 19 QPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDG---LGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTI 95 (498)
T ss_pred CCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccc---CCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHH
Confidence 3567888888999999999999999999998876544 566666777777777777778889999999995 999999
Q ss_pred HHHHHHHHHHHHHHHhcc--CchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChh--hHHHHHHHHHHHHHHHHHHH
Q 024030 85 TLPLTLSIIPLAILAYRR--SISFFYAYYALRTLTAMVCEGSINCLALAYVADNISER--QRASAFGILLGVLSASFVCG 160 (273)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~g~~~g 160 (273)
.+|.++..++.++++... . ...+++...+.++ +.|.+=+...+++.|..|++ +|..++++++.+.++|+.++
T Consensus 96 ~lGail~~iGh~~L~~~~~~~---~~gl~i~L~~I~i-G~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~ 171 (498)
T COG3104 96 VLGAILMAIGHLVLAISSVSG---PGGLYIGLALIIV-GTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIA 171 (498)
T ss_pred HHHHHHHHHHHHHHhcccccc---ccHHHHHHHHHHh-ccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHH
Confidence 999999999999988774 4 5567777777777 77777789999999999865 47788899999999999999
Q ss_pred HHHHHHh----hhHHHHHHHHHHHHHHHHHHHHHhcC
Q 024030 161 TLAARFL----STTSAFQAATIVSMLAAAYMRVFLKD 193 (273)
Q Consensus 161 p~~~~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (273)
|.+.+++ +|+..|...++-....++. +...++
T Consensus 172 p~i~~~~~~~~g~~~gF~~aavGm~~gl~~-f~~~~r 207 (498)
T COG3104 172 PIITGLLAINYGWHVGFGLAAVGMIIGLVI-FLLGRR 207 (498)
T ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHHHHHH-HHHccc
Confidence 9998887 7888888887776666665 444443
No 141
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.43 E-value=1.3e-11 Score=108.30 Aligned_cols=142 Identities=13% Similarity=0.080 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhcc--CchhHHHHHHHHHHHhhhchhhHHHHHHH
Q 024030 54 GFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRR--SISFFYAYYALRTLTAMVCEGSINCLALA 131 (273)
Q Consensus 54 g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 131 (273)
++......+..+++.++.|+++||+|||++++.+.++.+++.+++.... +.... ......++.+.+......+...+
T Consensus 309 ~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 387 (479)
T PRK10077 309 LLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGI-VALLSMLFYVAAFAMSWGPVCWV 387 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccH-HHHHHHHHHHHHHhccccchhHH
Confidence 3444556777889999999999999999999999888888776655332 21111 22223333333122223356789
Q ss_pred HHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHH----------hhhHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 024030 132 YVADNISERQRASAFGILLGVLSASFVCGTLAARF----------LSTTSAFQAATIVSMLAAAYMRVFLKDDVP 196 (273)
Q Consensus 132 ~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~----------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (273)
+++|.+|+++|+++.|+.+....+|..+++.+... .+++..|++.+++.++..++.++..||+++
T Consensus 388 ~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 462 (479)
T PRK10077 388 LLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKG 462 (479)
T ss_pred HhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCCC
Confidence 99999999999999999999999888887544432 356677888777776666665566676543
No 142
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=99.42 E-value=3.8e-11 Score=102.37 Aligned_cols=226 Identities=12% Similarity=0.032 Sum_probs=153.7
Q ss_pred HHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhh----hCCchhhH-HH
Q 024030 13 LFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQ----YGRKAMLT-LP 87 (273)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr----~grr~~~~-~~ 87 (273)
.....+...........++..|+.|. .++++..+|.+..+.-+.-.+.-|+.|.++|| +||+|.++ .+
T Consensus 17 Yg~gd~~~~~~~~~~~~yLl~fYTdv-------~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g 89 (467)
T COG2211 17 YGLGDFASNFAFGIVVLYLLFFYTDV-------FGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWG 89 (467)
T ss_pred hcchhhHHHHHHHHHHHHHHHHHhcc-------cCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHH
Confidence 34455666677777788899998664 48889999999999999999999999999995 78877665 56
Q ss_pred HHHHHHHHHHHHhccC---chhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCC-hhhHHHHHHHHHHHHHHHHHHHH--
Q 024030 88 LTLSIIPLAILAYRRS---ISFFYAYYALRTLTAMVCEGSINCLALAYVADNIS-ERQRASAFGILLGVLSASFVCGT-- 161 (273)
Q Consensus 88 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~gp-- 161 (273)
.+..++...++...++ ..+....++...+.++ +....+.+..++.+++.+ ++||.+..+.-....++|..+..
T Consensus 90 ~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l-~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~ 168 (467)
T COG2211 90 AIPFAIVAVLLFITPDFSMTGKLIYALVTYMLLGL-GYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVL 168 (467)
T ss_pred hHHHHHHHHHHHcCCCcccCcchHHHHHHHHHHHH-HHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777776666665553 2234556666777777 666666788888899875 68999999998888888855442
Q ss_pred --HHHHHh-------hhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCcccccccc
Q 024030 162 --LAARFL-------STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKI 232 (273)
Q Consensus 162 --~~~~~l-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (273)
++...+ +|+..-.+.+++..+..+..++..+|+..+.++. ++ ..+
T Consensus 169 ~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~------------------------~~--~~~ 222 (467)
T COG2211 169 FPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPT------------------------KT--GVK 222 (467)
T ss_pred HHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccC------------------------cc--ccc
Confidence 233333 4455555555555555555455555554422221 01 112
Q ss_pred chHHHHHHHHhhcchhHHHHHHHHHhccccccceeeeecc
Q 024030 233 PSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLVY 272 (273)
Q Consensus 233 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 272 (273)
.++++.+...++||.++..++..++...+..-..+...+|
T Consensus 223 ~~~~~~~~~~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy 262 (467)
T COG2211 223 LKLKDSFLLIFKNRPLLLLLLMNLLLFIAFNIRGSIMVYY 262 (467)
T ss_pred ccHHHHHHHHHccchHHHHHHHHHHHHHHHHHHhhhhhee
Confidence 2556666678899999999998887776665555554444
No 143
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.41 E-value=7.4e-11 Score=100.62 Aligned_cols=162 Identities=11% Similarity=0.102 Sum_probs=118.5
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHH
Q 024030 8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP 87 (273)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~ 87 (273)
|.++......++..........+.|.|.+|. +.+....|.+.+...++..+..++.|++.||+|+|+.+..+
T Consensus 205 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--------g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~ 276 (382)
T PRK11128 205 PTVWRFLLCVSLLQGSHAAYYGFSAIYWQAA--------GYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLS 276 (382)
T ss_pred hhHHHHHHHHHHHHHHhHhHHHHHHHHHHHC--------CCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 3444444545555555555667778887542 44556678888888889999999999999999999999988
Q ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 024030 88 LTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILL-GVLSASFVCGTLAARF 166 (273)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~gp~~~~~ 166 (273)
.+...+........++ .+.+++..++.|+ +.+...+....++.+. +++++++..+..+ ....+|..+||.++|.
T Consensus 277 ~~~~~~~~~~~~~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~ 351 (382)
T PRK11128 277 AICGVVRWGLMGSTTA---LPWLIVIQILHCG-TFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGF 351 (382)
T ss_pred HHHHHHHHHHHHhhhh---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888887777766666 7778888898998 5666667788888886 5667788888875 5567788999999998
Q ss_pred hhhH---HHHHHHHHHHHH
Q 024030 167 LSTT---SAFQAATIVSML 182 (273)
Q Consensus 167 l~~~---~~~~~~~~~~~~ 182 (273)
+-.+ ..++..+++.++
T Consensus 352 l~~~~g~~~~~~~~~~~~~ 370 (382)
T PRK11128 352 LYQHLGAGVFWVMALVALP 370 (382)
T ss_pred HHHhccHHHHHHHHHHHHH
Confidence 8322 344444444433
No 144
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.41 E-value=4.1e-11 Score=103.88 Aligned_cols=157 Identities=16% Similarity=0.130 Sum_probs=95.8
Q ss_pred HHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHH-
Q 024030 21 GFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILA- 99 (273)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~- 99 (273)
....+....++|.|+++.. +.+....+...+...+...+++++.|+++||+|||+.+..+.++..+......
T Consensus 256 ~~~~~~~~~~lp~~l~~~~-------g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~ 328 (432)
T PRK10406 256 SLCFYTFTTYMQKYLVNTA-------GMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILS 328 (432)
T ss_pred HHHHHHHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHH
Confidence 4556667788999986632 33445566777777777788899999999999999987766554433322111
Q ss_pred -hccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHh---h-hHHHH
Q 024030 100 -YRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSA-SFVCGTLAARFL---S-TTSAF 173 (273)
Q Consensus 100 -~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~gp~~~~~l---~-~~~~~ 173 (273)
.....+ ....+....+.++ ..+...+....+.+|.+|++.|+++.|+.+...++ .....|.+.+.+ + |...+
T Consensus 329 ~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~g~~~~~~ 406 (432)
T PRK10406 329 ALQNVSS-PYAAFGLVMCALL-IVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKSIGMETAFF 406 (432)
T ss_pred HHHcCCc-HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHHhCCCcHHH
Confidence 111111 2222222222222 22333355678889999999999999998766554 344577777766 3 34445
Q ss_pred HHHHHHHHHHHHH
Q 024030 174 QAATIVSMLAAAY 186 (273)
Q Consensus 174 ~~~~~~~~~~~~~ 186 (273)
+..++..++..+.
T Consensus 407 ~~~~~~~~i~~~~ 419 (432)
T PRK10406 407 WYVTLMAVVAFLV 419 (432)
T ss_pred HHHHHHHHHHHHH
Confidence 5444444444444
No 145
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.40 E-value=3.8e-11 Score=102.88 Aligned_cols=161 Identities=11% Similarity=0.061 Sum_probs=118.5
Q ss_pred HHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHh
Q 024030 21 GFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAY 100 (273)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~ 100 (273)
...........|.|.++.... .+.+....|.+.+...+...++.+..|++.||+|||+.+.++..+.++...+...
T Consensus 228 ~~~~~~~~~~~~~y~~~~~~~----~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~ 303 (396)
T TIGR00882 228 ACVYDVFDQQFANFFTSFFAT----PQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSF 303 (396)
T ss_pred HHHHHHHHHHHHHHHHHhccc----cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh
Confidence 333344445677787764321 1233345688888888888999999999999999999999888888887777666
Q ss_pred ccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHH-HHHHHHHHHHHHHHHHHHh----hhHHHHHH
Q 024030 101 RRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGI-LLGVLSASFVCGTLAARFL----STTSAFQA 175 (273)
Q Consensus 101 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~gp~~~~~l----~~~~~~~~ 175 (273)
.++ .+.+++..++.|+ +..........+..+..+++.+++..+. .+....+|..++|.++|++ |++.+|.+
T Consensus 304 ~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~ 379 (396)
T TIGR00882 304 ATT---ALEVVILKMLHAF-EVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLV 379 (396)
T ss_pred cCC---hHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHH
Confidence 666 6777788888887 4444444556677777887777776666 5778899999999988887 67888888
Q ss_pred HHHHHHHHHHHHHH
Q 024030 176 ATIVSMLAAAYMRV 189 (273)
Q Consensus 176 ~~~~~~~~~~~~~~ 189 (273)
.+++.++..++..+
T Consensus 380 ~~~~~~i~~~~~~~ 393 (396)
T TIGR00882 380 LGCIVLLFTLISVF 393 (396)
T ss_pred HHHHHHHHHHHHHH
Confidence 88877766665443
No 146
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.40 E-value=4.5e-11 Score=103.31 Aligned_cols=133 Identities=15% Similarity=0.114 Sum_probs=94.0
Q ss_pred hHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccCch
Q 024030 26 MVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSIS 105 (273)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~ 105 (273)
.....+|.|+++. +.+....+...+...++..++.++.|++.||+|||+.+..+.++..+........+...
T Consensus 249 ~~~~~~~~~~~~~--------g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (426)
T PRK12307 249 PIFGLLPTYLAGE--------GFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDN 320 (426)
T ss_pred HHHHHHHHHHHHc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 3556788887653 34445667778888999999999999999999999998888777666554444333211
Q ss_pred hHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024030 106 FFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLS 168 (273)
Q Consensus 106 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l~ 168 (273)
...+....+..+++..+ ..+....++.|.+|+++|++++|+......+|..++|.+.+.+.
T Consensus 321 -~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~ 381 (426)
T PRK12307 321 -YLLLGACLFGLMATNVG-VGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLG 381 (426)
T ss_pred -HHHHHHHHHHHHHhccc-HhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHH
Confidence 22221222222221122 22456678899999999999999999999999999999999884
No 147
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.40 E-value=3.5e-11 Score=101.45 Aligned_cols=150 Identities=17% Similarity=0.221 Sum_probs=114.9
Q ss_pred hhHHHHHHHHHHHHHHHhHH-HhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHH
Q 024030 9 TLSHLFVTVFLWGFATMMVV-PAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP 87 (273)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~ 87 (273)
.++......+.......... ...|.+.++. .+.+..+.|.+.....++.+++.++.+++.||+|||+.+..+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 283 (365)
T TIGR00900 211 LLRTLLLLALLFNLVFAPAIVALFPYVQSKY-------LGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGA 283 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-------hCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHH
Confidence 34444444444444444344 6778887653 244556778888889999999999999999999999998887
Q ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024030 88 LTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL 167 (273)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l 167 (273)
.....++.....+.++ +.+.+.+..++.|+ +.+...+...+++.|..|+++|+++.|+.+....++..++|.++|.+
T Consensus 284 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l 360 (365)
T TIGR00900 284 IFVIGLAILVVGLTPP--NFPLFLVLWFAIGV-GYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPL 360 (365)
T ss_pred HHHHHHHHHHHHhhch--hHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766666666655542 15677778888887 55666688899999999999999999999999999999999999876
Q ss_pred h
Q 024030 168 S 168 (273)
Q Consensus 168 ~ 168 (273)
.
T Consensus 361 ~ 361 (365)
T TIGR00900 361 A 361 (365)
T ss_pred H
Confidence 3
No 148
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.40 E-value=7.4e-11 Score=98.61 Aligned_cols=171 Identities=12% Similarity=0.062 Sum_probs=130.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhH
Q 024030 6 EIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLT 85 (273)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~ 85 (273)
+++.++..+...++...+.+...+++..+++|.. +.+....+++...+.++.++++.+.|+++|| +.|+.+.
T Consensus 209 ~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~-------g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~ 280 (394)
T COG2814 209 RRPGVLLGLLATFLFMTGHFALYTYIRPFLESVA-------GFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALI 280 (394)
T ss_pred cCchHHHHHHHHHHHHcchhhhHHhHHHHHHHcc-------CCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHH
Confidence 3556777788888888899999999999987742 5666788999999999999999999999999 8888888
Q ss_pred HHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCC--hhhHHHHHHHHHHHHHHHHHHHHHH
Q 024030 86 LPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNIS--ERQRASAFGILLGVLSASFVCGTLA 163 (273)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~--~~~r~~~~~~~~~~~~~g~~~gp~~ 163 (273)
....+.++....+.+..+. .+..++..++.|+ ... +..+.+..+..+ +|.+..+.++.....++|..+|..+
T Consensus 281 ~~~~l~a~~~l~l~~~~~~--~~~~~~~~~~wg~-a~~---~~~~~~~~~~a~~~p~~~~~a~sl~~aa~nlgia~GA~l 354 (394)
T COG2814 281 AALLLLALALLALTFTGAS--PALALALLFLWGF-AFS---PALQGLQTRLARLAPDAADLAGSLNVAAFNLGIALGAAL 354 (394)
T ss_pred HHHHHHHHHHHHHHHhcch--HHHHHHHHHHHHH-Hhh---hhhhHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 8877777777666655542 4555566666676 322 344444444433 5889999999999999999999999
Q ss_pred HHHh----hhHHHHHHHHHHHHHHHHHHHHH
Q 024030 164 ARFL----STTSAFQAATIVSMLAAAYMRVF 190 (273)
Q Consensus 164 ~~~l----~~~~~~~~~~~~~~~~~~~~~~~ 190 (273)
+|.+ ++....++.+++.++...+....
T Consensus 355 GG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~ 385 (394)
T COG2814 355 GGLVLDALGYAATGWVGAALLLLALLLALLS 385 (394)
T ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Confidence 9887 66777777777777766664443
No 149
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.39 E-value=2.1e-11 Score=104.43 Aligned_cols=135 Identities=14% Similarity=0.116 Sum_probs=100.3
Q ss_pred HHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHH-HHHhcc
Q 024030 24 TMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLA-ILAYRR 102 (273)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~-~~~~~~ 102 (273)
......++|.|+.+. .+.+..+.+.+.+...++..++.++.|+++||+|||+.+..+.....+... .....+
T Consensus 254 ~~~~~~~~~~~~~~~-------~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~ 326 (405)
T TIGR00891 254 SHPIQDLLPTYLKAD-------LGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGA 326 (405)
T ss_pred HhhhhhhhHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCC
Confidence 334556778887553 255566778888889999999999999999999999998877765533322 222323
Q ss_pred CchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024030 103 SISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLST 169 (273)
Q Consensus 103 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l~~ 169 (273)
+ .+.+.+..++.+++..+ ..+...+++.|.+|+++|++++|+.+...++|..++|.++|.+..
T Consensus 327 ~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~ 389 (405)
T TIGR00891 327 N---VAVLGLGLFFQQMLVQG-IWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQ 389 (405)
T ss_pred c---hHHHHHHHHHHHHHHcc-chhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 45555555555553333 336778899999999999999999999999999999999998843
No 150
>PRK15075 citrate-proton symporter; Provisional
Probab=99.39 E-value=5.2e-11 Score=103.31 Aligned_cols=140 Identities=16% Similarity=0.202 Sum_probs=92.4
Q ss_pred HHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHH-H
Q 024030 19 LWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLA-I 97 (273)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~-~ 97 (273)
......+....+.|.|+++.. +.+..+.++......++..++.++.|+++||+|||+++..+.....+... .
T Consensus 249 ~~~~~~~~~~~~~p~~l~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~ 321 (434)
T PRK15075 249 MTTVSFYLITVYTPTFGKTVL-------HLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPA 321 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 344555667788999987632 33444567777788888999999999999999999988776544332221 1
Q ss_pred HH-hccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHH-HHHHHHHHHHHHHHHh
Q 024030 98 LA-YRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLG-VLSASFVCGTLAARFL 167 (273)
Q Consensus 98 ~~-~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~g~~~gp~~~~~l 167 (273)
.. ...+ ..........++.++ +.+...+....+..|.+|++.|+++.++.+. ...++..++|.+.+++
T Consensus 322 ~~~~~~~-~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i 391 (434)
T PRK15075 322 LSWLVAA-PSFARMLAVELWLSF-LYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWL 391 (434)
T ss_pred HHHHHcC-CchHHHHHHHHHHHH-HHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHH
Confidence 11 1121 113333333444444 3344445667889999999999999998644 4444577788888776
No 151
>TIGR00895 2A0115 benzoate transport.
Probab=99.39 E-value=4.2e-11 Score=102.17 Aligned_cols=141 Identities=15% Similarity=0.174 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHH
Q 024030 15 VTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIP 94 (273)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~ 94 (273)
...++..........++|.+.++. +.+....+...+...++..++.++.|+++||+|||+............
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~--------g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 328 (398)
T TIGR00895 257 LLYFMLLVGVYFLTNWLPKLMVEL--------GFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFA 328 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 334444455556666777554332 444556788888889999999999999999999995544444333333
Q ss_pred HHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024030 95 LAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL 167 (273)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l 167 (273)
..+.....+ .+...+..++.|+ +.+...+...+++.|.+|+++|+++.|+......+|..+||.++|.+
T Consensus 329 ~~~~~~~~~---~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 329 VLVGSTLFS---PTLLLLLGAIAGF-FVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHhhC---HHHHHHHHHHHHH-HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 333322344 5566677778887 55556688999999999999999999999999999999999998864
No 152
>TIGR00898 2A0119 cation transport protein.
Probab=99.38 E-value=5.8e-11 Score=104.95 Aligned_cols=136 Identities=18% Similarity=0.141 Sum_probs=100.0
Q ss_pred HHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCC
Q 024030 59 IIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNIS 138 (273)
Q Consensus 59 ~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~ 138 (273)
...+..+.+.++.+++.||+|||+.+..+.++.+++.++..+.++.. .+...+..++.++ +.+...+....+.+|.+|
T Consensus 363 ~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~e~~p 440 (505)
T TIGR00898 363 ISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDL-YFLRTALAVLGKF-GITSAFQMVYLYTAELYP 440 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHH-HHHHHHHHHHHHhccccc
Confidence 34566677888899999999999999998888888777776665432 2333344444444 334444778889999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 024030 139 ERQRASAFGILLGVLSASFVCGTLAARFL--STTSAFQAATIVSMLAAAYMRVFLKDDVPN 197 (273)
Q Consensus 139 ~~~r~~~~~~~~~~~~~g~~~gp~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (273)
++.|++++|+.+....+|..++|.+.+.. ++..++.+.++..++..++ .+++||++++
T Consensus 441 ~~~r~~~~g~~~~~~~ig~~i~p~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~lpet~~~ 500 (505)
T TIGR00898 441 TVVRNLGVGVCSTMARVGSIISPFLVYLGEKWLFLPLVLFGGLALLAGIL-TLFLPETKGV 500 (505)
T ss_pred HHHHhhhHhHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHHH-HHcCcCCCCC
Confidence 99999999999999999999999998832 3456677766666665555 4567876543
No 153
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=99.38 E-value=1.5e-10 Score=98.75 Aligned_cols=177 Identities=14% Similarity=0.168 Sum_probs=131.6
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHH
Q 024030 7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL 86 (273)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~ 86 (273)
+|.+...++..++..........+.+.|++|.. +.+....|.+.++..++-+..-...+++..|+|.|+++.+
T Consensus 206 ~~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~g-------g~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~ 278 (400)
T PF03825_consen 206 NPRFLVFLLAAFLIGISHAAYYTFFSIYLQELG-------GYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLL 278 (400)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-------cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 344556666777777788888889999998752 1333455767777778888888899999999999999999
Q ss_pred HHHHHHHHHHHHHhc-cCchhHHHH----HHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHH-HHHHHHHHH
Q 024030 87 PLTLSIIPLAILAYR-RSISFFYAY----YALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLG-VLSASFVCG 160 (273)
Q Consensus 87 ~~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~g~~~g 160 (273)
+.+..++=..+++.. ++ .+.. .....+.|+ ..+........++.+..|++.|+++.++++. ..++|..+|
T Consensus 279 a~~~~~vR~~l~a~~~~~---~~~~~~~~~l~q~lhG~-tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG 354 (400)
T PF03825_consen 279 ALVAYAVRWLLYAYFSDP---WPFIVALQLLGQLLHGL-TFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIG 354 (400)
T ss_pred HHHHHHHHHHHHHHhcCC---cHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHH
Confidence 999999998888877 44 2222 233456887 6667778999999999999999999999865 578999999
Q ss_pred HHHHHHhh----------hHHHHHHHHHHHHHHHHHHHHHhcCC
Q 024030 161 TLAARFLS----------TTSAFQAATIVSMLAAAYMRVFLKDD 194 (273)
Q Consensus 161 p~~~~~l~----------~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (273)
..++|++- |...+.+.+++.++..++.+...||+
T Consensus 355 ~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 355 SLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKPK 398 (400)
T ss_pred HHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 99999882 22344455555555555545555554
No 154
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.38 E-value=1.1e-10 Score=100.34 Aligned_cols=150 Identities=12% Similarity=0.032 Sum_probs=101.4
Q ss_pred hhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHH
Q 024030 9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL 88 (273)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~ 88 (273)
.++.......+............|.++++.. +.+..+.|+......++..++.++.|+++||+|+|+.+..+.
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-------g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~ 288 (406)
T PRK15402 216 RFVAGALALGLVSLPLLAWIALSPVILISGE-------QLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGL 288 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 3343333333333333444456677765532 344456677767677788899999999999999999988887
Q ss_pred HHHHHHHHHHHhcc--CchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024030 89 TLSIIPLAILAYRR--SISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF 166 (273)
Q Consensus 89 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~ 166 (273)
+...++..+....+ .....+++.+..++.|+ +.+...+......... ++++|++..+..+....+|..+|+.+++.
T Consensus 289 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~-g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~ 366 (406)
T PRK15402 289 WPMVAGLLLAALATVISSHAYLWLTAGLSLYAF-GIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKH 366 (406)
T ss_pred HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHH-HHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77766666554432 11124556667777777 4454445555554443 45899999999999999999999999998
Q ss_pred h
Q 024030 167 L 167 (273)
Q Consensus 167 l 167 (273)
+
T Consensus 367 l 367 (406)
T PRK15402 367 A 367 (406)
T ss_pred c
Confidence 7
No 155
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.37 E-value=4.5e-11 Score=103.80 Aligned_cols=177 Identities=10% Similarity=-0.017 Sum_probs=111.8
Q ss_pred hHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHH
Q 024030 10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLT 89 (273)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~ 89 (273)
++...+..++.....+....++|.|+++.. +.+....++......++..++.++.|+++||+++++....+..
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~-------g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~ 325 (438)
T TIGR00712 253 LWYIAIANVFVYLLRYGVLDWSPTYLKEVK-------HFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVF 325 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHcc-------CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHH
Confidence 444444445555555667788999987632 4455667888888889999999999999999975443333332
Q ss_pred HHH---HHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHH-HHHHHHHHH
Q 024030 90 LSI---IPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSAS-FVCGTLAAR 165 (273)
Q Consensus 90 ~~~---~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g-~~~gp~~~~ 165 (273)
... ++...+...+..+ .+......+..|++..+.. ........|.+|+++|+++.|+.+....+| ..+||.+.|
T Consensus 326 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G 403 (438)
T TIGR00712 326 FMTLVTIAVIVYWMNPAGN-PLVDMICMIVIGFLIYGPV-MLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVG 403 (438)
T ss_pred HHHHHHHHHHHHHhcCCCc-hHHHHHHHHHHHHHHccHH-HHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHH
Confidence 221 1212222222111 2333333344443222211 222346789999999999999998887776 467888887
Q ss_pred Hh----hhHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 024030 166 FL----STTSAFQAATIVSMLAAAYMRVFLKDDV 195 (273)
Q Consensus 166 ~l----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (273)
.+ ++...+.+.+++.+++.+...+.+||.+
T Consensus 404 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (438)
T TIGR00712 404 YTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK 437 (438)
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 76 6778888877777777777677777654
No 156
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.37 E-value=1.7e-11 Score=107.54 Aligned_cols=151 Identities=18% Similarity=0.063 Sum_probs=96.9
Q ss_pred HHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCch-------hhHHHHHHHHHHHH
Q 024030 24 TMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKA-------MLTLPLTLSIIPLA 96 (273)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~-------~~~~~~~~~~~~~~ 96 (273)
......++|.|+.+. .+.+....+.+.+...++..++++++|+++||+|||+ .......+..+...
T Consensus 268 ~~~~~~~~p~~l~~~-------~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~ 340 (476)
T PLN00028 268 ELTMDNIIAEYFYDR-------FGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCI 340 (476)
T ss_pred HHHHHhHHHHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHH
Confidence 344556788887543 2555667788888999999999999999999998762 22222222222223
Q ss_pred HHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHH---hhhHHHH
Q 024030 97 ILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF---LSTTSAF 173 (273)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~---l~~~~~~ 173 (273)
+....++ .+...+..++.++ +.+...+...++..+.. +++|+.+.|+.+...++|..++|.+.+. .+|+..|
T Consensus 341 ~~~~~~~---~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~g~lg~~i~~~l~~~~~~~~y~~~f 415 (476)
T PLN00028 341 WLGRANS---LGAAIVVMILFSI-FVQAACGATFGIVPFVS-RRSLGVISGLTGAGGNVGAVLTQLLFFTGSSYSTETGI 415 (476)
T ss_pred Hhcccch---HHHHHHHHHHHHH-HHHHhhhhhcccCcccC-hhhchhhhhhhhccccHHHHHHHHHHHhcCCccHhhHH
Confidence 3333333 3444444444454 22223344555666654 4789999999988888888888876542 2588888
Q ss_pred HHHHHHHHHHHHH
Q 024030 174 QAATIVSMLAAAY 186 (273)
Q Consensus 174 ~~~~~~~~~~~~~ 186 (273)
++.+++.+++.++
T Consensus 416 ~~~~~~~~i~~~~ 428 (476)
T PLN00028 416 SLMGVMIIACTLP 428 (476)
T ss_pred HHHHHHHHHHHHH
Confidence 8887777666555
No 157
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=99.37 E-value=1.2e-10 Score=101.28 Aligned_cols=197 Identities=15% Similarity=0.122 Sum_probs=132.3
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHH-HHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHH
Q 024030 50 IYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL-TLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCL 128 (273)
Q Consensus 50 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 128 (273)
....++..++..+...+..|+.|.++|+-|+||.++... .+..++...+.+.+. +.++...+..++..+ +.+.....
T Consensus 69 ~s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~-~~~~~~~~l~iia~v-~~~~~~vf 146 (477)
T PF11700_consen 69 SSLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSP-GQWWLALVLFIIANV-GYEASNVF 146 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCc-chHHHHHHHHHHHHH-HHHHHHHH
Confidence 345678888999999999999999999999888776544 444455555555433 223444444444444 44555578
Q ss_pred HHHHHHhcCChhhH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHh------------hhH
Q 024030 129 ALAYVADNISERQR--------------------------ASAFGILLGVLSASFVCGTLAARFL------------STT 170 (273)
Q Consensus 129 ~~~~~~~~~~~~~r--------------------------~~~~~~~~~~~~~g~~~gp~~~~~l------------~~~ 170 (273)
.+++++|+.+++++ ++..+.-.....+|+.+.-.+.-.+ +.|
T Consensus 147 yna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r 226 (477)
T PF11700_consen 147 YNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIR 226 (477)
T ss_pred HHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhh
Confidence 99999999998888 8888888888888877765544332 237
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchHHHHHHHHhhcchhHH
Q 024030 171 SAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQ 250 (273)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 250 (273)
..+.+.++..++..+...+.+||.++.++.++ ..+......++.++.++..+|+|.+.+
T Consensus 227 ~~~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~---------------------~~~~~~~g~~~l~~t~k~~~~~~~~~~ 285 (477)
T PF11700_consen 227 VAFLIVALWWLVFSIPLFLWLPDRPGPRPLPS---------------------GSSYLRFGFKRLWRTFKEIRKLRQLFL 285 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCc---------------------chhHHHHHHHHHHHHHHHHHhChHHHH
Confidence 77778877777777766777777655322210 001111222355566777889999999
Q ss_pred HHHHHHHhccccccceeee
Q 024030 251 AAVVAFFSGLSEGGMQASF 269 (273)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~ 269 (273)
.+++.+++.-+...+....
T Consensus 286 fLia~~l~~dg~~ti~~~~ 304 (477)
T PF11700_consen 286 FLIAYFLYSDGVNTIISFA 304 (477)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999886666554443
No 158
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.37 E-value=4.1e-11 Score=99.47 Aligned_cols=178 Identities=12% Similarity=0.068 Sum_probs=133.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhh--CCchh
Q 024030 6 EIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQY--GRKAM 83 (273)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~--grr~~ 83 (273)
++|.+|.+.+..++..+..+.+.-+.|.|+.|. .+.+...+++..+.+-++.+.+++++|++|||+ |||.+
T Consensus 250 ~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~-------k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p 322 (448)
T COG2271 250 KNKLIWLLALANVFVYVVRYGINDWGPLYLSEV-------KGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGP 322 (448)
T ss_pred cChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh-------cCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccch
Confidence 356788888888888999999999999999773 256667788889999999999999999999996 67755
Q ss_pred hH-HHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHH-HHHHHH
Q 024030 84 LT-LPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSA-SFVCGT 161 (273)
Q Consensus 84 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~gp 161 (273)
.- +..+...++...+...++. +.++..+..++.|+...|.. -.......|..|++.-|++.|+...+..+ |...+.
T Consensus 323 ~~~i~~~~i~~~~~~~w~~~~~-~~~l~~~~l~~iGf~IyGPq-mLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~ 400 (448)
T COG2271 323 MALIFMLLITASLVLYWLAPNG-SYLLDAILLFIIGFLIYGPQ-MLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAG 400 (448)
T ss_pred HHHHHHHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHHHHhhHH-HHHHHHHhccccHhhccchhchhhhHHHHhhHHhcC
Confidence 44 4444455555555566653 35777778888887554544 35566778999999999999999998888 777776
Q ss_pred HHHHHh----hhHHHHHHHHHHHHHHHHHHHHHhc
Q 024030 162 LAARFL----STTSAFQAATIVSMLAAAYMRVFLK 192 (273)
Q Consensus 162 ~~~~~l----~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (273)
...+++ ||...|.+..+..+++.++......
T Consensus 401 ~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~~ 435 (448)
T COG2271 401 LPLGYIADTWGWDGGFIVLSIAALLAILLLLPVWN 435 (448)
T ss_pred CcceeeEecCCCcchHHHHHHHHHHHHHHHHHHHh
Confidence 665555 8988888877766665554344433
No 159
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.37 E-value=3.6e-11 Score=105.99 Aligned_cols=150 Identities=13% Similarity=0.038 Sum_probs=116.0
Q ss_pred hHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHH
Q 024030 10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLT 89 (273)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~ 89 (273)
+.......+...........++|.|+++. .+.++.+.|.......++..++.++.|++.||+|+|+.+..+.+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~lq~v-------~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~ 333 (495)
T PRK14995 261 ILSGVVMAMTAMITLVGFELLMAQELQFV-------HGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMA 333 (495)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 33444444455555555667888888663 26667788999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024030 90 LSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL 167 (273)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l 167 (273)
+..++...+......+..+......++.|+ +.+...+.....+.+..|+++++.+.++.+...++|..+|+.+.+.+
T Consensus 334 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~-g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i 410 (495)
T PRK14995 334 LSALSFYGLAMTDFSTQQWQAWGLMALLGF-SAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLL 410 (495)
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHH-hHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777766655443322224555667788887 55666677888888999999999999999999999999999988876
No 160
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.37 E-value=1.4e-10 Score=102.05 Aligned_cols=167 Identities=13% Similarity=0.085 Sum_probs=111.6
Q ss_pred HHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHH-HHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHH
Q 024030 17 VFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQA-IIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPL 95 (273)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~ 95 (273)
.++...+........+.|+.+. .+.+....|++.. ...++.+++.++.|+++||+|+|+.+..+.++..+..
T Consensus 231 ~~l~~~~~~~~~~~~~~~l~~~-------~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~ 303 (491)
T PRK11010 231 IVLYKLGDAFAMSLTTTFLIRG-------VGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSN 303 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3344444444555667776442 2556667787764 5567899999999999999999988776655544433
Q ss_pred HHH---HhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh----h
Q 024030 96 AIL---AYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----S 168 (273)
Q Consensus 96 ~~~---~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l----~ 168 (273)
..+ ....+ +.+.+....++..+ ..+...+...++..+..+++.+++..++.+...++|..+++.++|.+ |
T Consensus 304 l~~~~l~~~~~--~~~~l~~~~~l~~~-~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G 380 (491)
T PRK11010 304 AGYWLLSITDK--NLYSMGAAVFFENL-CGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHG 380 (491)
T ss_pred HHHHHHHhccc--cHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 322 22221 13444444455443 33444466788889999999999999999999999988777777766 7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCC
Q 024030 169 TTSAFQAATIVSMLAAAYMRVFLKDD 194 (273)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (273)
|+..|.+.+++.+++.+... ..+++
T Consensus 381 ~~~~f~~~~~~~l~~l~~~~-~~~~~ 405 (491)
T PRK11010 381 WPTFYLFSVAAAVPGLLLLL-VCRQT 405 (491)
T ss_pred hHHHHHHHHHHHHHHHHHHH-HHHhc
Confidence 88888887777777665533 34443
No 161
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.36 E-value=5.8e-11 Score=104.33 Aligned_cols=151 Identities=13% Similarity=0.104 Sum_probs=116.0
Q ss_pred hhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHH
Q 024030 9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL 88 (273)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~ 88 (273)
.+....+..++.....+....++|.|+++.. +.+..+.|+......++..++.++.|++.||+|||+.+..+.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-------g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~ 328 (485)
T TIGR00711 256 NFTIGCVYMSLLGLGLYGSFYLLPLYLQQVL-------GYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGL 328 (485)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHH
Confidence 3444455555556666667778899987642 455667788888899999999999999999999999998888
Q ss_pred HHHHHHHHHHHh-ccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024030 89 TLSIIPLAILAY-RRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL 167 (273)
Q Consensus 89 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l 167 (273)
.+..++...+.+ .......+.+....++.|+ +.+...+.......+..|+++|+++.|+.+....+|..+|+.+.+.+
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~-g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~ 407 (485)
T TIGR00711 329 ILYAVGFYWRAFTFTPDTPFLAIALPQFIRGF-GMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTI 407 (485)
T ss_pred HHHHHHHHHHhccCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887777766652 2222225556666777887 55555566677777889999999999999999999999999888876
No 162
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=99.35 E-value=6.4e-11 Score=98.39 Aligned_cols=176 Identities=13% Similarity=0.164 Sum_probs=133.0
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHH
Q 024030 7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL 86 (273)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~ 86 (273)
++++....+..++..-+...+...-..|.. ..++++..+..++.....+..+++.+++|++.||+|.|+++..
T Consensus 251 ~~~i~~FLiA~~~~~DGv~til~~~~~fg~-------~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~ 323 (438)
T COG2270 251 RKNLVLFLIARFFYIDGVNTILAMGGVFGA-------ADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMI 323 (438)
T ss_pred ccchHHHHHHHHHHHhhHHHHHHHHHHHHH-------HHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehH
Confidence 345565666666666666666777777754 3447777888888888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024030 87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF 166 (273)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~ 166 (273)
+.++..+..+...+... ...+.+...+.|. ..|..++.+.++..+.+|+++-++.+|+++.....+..+||++-+.
T Consensus 324 ~lvi~~~~~~~~~~~~~---~~~f~i~gll~g~-s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v 399 (438)
T COG2270 324 GLVILSIAALYLIFLEG---ELDFWILGLLVGT-SLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAV 399 (438)
T ss_pred HHHHHHHHHHHHHHccc---cHHHHHHHHHHHH-hcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHH
Confidence 98888777666555555 3445556666776 5566669999999999999999999999999999999999999888
Q ss_pred h-----hhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 024030 167 L-----STTSAFQAATIVSMLAAAYMRVFLKDD 194 (273)
Q Consensus 167 l-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (273)
+ +.|..+....++..+.+++ ....|++
T Consensus 400 ~t~iTg~~r~g~~~i~vll~iGl~~-L~~v~~~ 431 (438)
T COG2270 400 ITQITGSSRAGVLSIIVLLLIGLLL-LLRVKVP 431 (438)
T ss_pred HHHHhcchhhHHHHHHHHHHhhHhh-EEeecCC
Confidence 7 3465565555555555444 4444543
No 163
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=99.35 E-value=9.4e-11 Score=95.51 Aligned_cols=202 Identities=14% Similarity=0.131 Sum_probs=151.5
Q ss_pred HhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccCc
Q 024030 25 MMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSI 104 (273)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~ 104 (273)
..+.|.++... ++.+.+...+|++.+...++..+.+|+..+++.|+|.++.+..+.++..++..+=... +
T Consensus 29 tsvgPLL~~Ir--------~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~- 98 (395)
T COG2807 29 TSVGPLLDEIR--------QDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-G- 98 (395)
T ss_pred hhhhhhHHHHH--------HHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-c-
Confidence 44556666664 4458888999999999999999999999999999999999999999988887776554 4
Q ss_pred hhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHH----HHHHh-hhHHHHHHHHHH
Q 024030 105 SFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTL----AARFL-STTSAFQAATIV 179 (273)
Q Consensus 105 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~----~~~~l-~~~~~~~~~~~~ 179 (273)
.+.++....+.|. +-+..+...++.+-+.+| ++-+..+|++....++|..+++. +.... +||....+-+..
T Consensus 99 --~~~L~~gt~l~G~-gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~ 174 (395)
T COG2807 99 --LPLLFLGTLLAGA-GIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALL 174 (395)
T ss_pred --HHHHHHHHHHHHh-hHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHH
Confidence 6778888888887 667888899999999998 56789999999888887766644 44444 799888887777
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchHHHHHHHHhhcchhHHHHHHHHHhc
Q 024030 180 SMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSG 259 (273)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 259 (273)
+++++++ ++|...+++... ...+..+.. .++|||.-|.+.+.+-+.+
T Consensus 175 allAl~~---WlPq~~r~~~~~-------------------------~~~~~~~~~-----~vw~~~~aW~vtLfmGlqS 221 (395)
T COG2807 175 ALLALLI---WLPQALREQAAS-------------------------IATKLVSVR-----KVWRSPLAWQVTLFMGLQS 221 (395)
T ss_pred HHHHHHH---Hhhhcccccccc-------------------------ccccccccc-----ccccCchhHHHHHHHHhhH
Confidence 7766655 234421111110 000100011 1678899999999999999
Q ss_pred cccccceeeeeccC
Q 024030 260 LSEGGMQASFLVYI 273 (273)
Q Consensus 260 ~~~~~~~~~~~~yl 273 (273)
+.++....|+|.++
T Consensus 222 ~~~Y~~~~WLP~il 235 (395)
T COG2807 222 LLYYIVIGWLPAIL 235 (395)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988763
No 164
>PRK10054 putative transporter; Provisional
Probab=99.34 E-value=1e-10 Score=100.15 Aligned_cols=151 Identities=11% Similarity=0.059 Sum_probs=107.3
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHH
Q 024030 8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP 87 (273)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~ 87 (273)
|.++......++............+.|..+. .+.+.+....|.+.....+.....+++.|++.||.++|+.+..+
T Consensus 206 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~ 280 (395)
T PRK10054 206 KALLWFTCSGFLASFVSGAFASCISQYVMVV-----ADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAG 280 (395)
T ss_pred ceehHHHHHHHHHHHHHHHhhhhHHHHHHHh-----cccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHH
Confidence 3444444444444444444445666665442 12245556678888888888888889999999999999998888
Q ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024030 88 LTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL 167 (273)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l 167 (273)
.....++...+.+..+ +.+.+.+..++.|+ +.+...+...+.+.+..|++.|+++.+..+ ...+|..+||.++|.+
T Consensus 281 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l 356 (395)
T PRK10054 281 TLCFVIGLVGFIFSGN--SLLLWGMSAAVFTV-GEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVI 356 (395)
T ss_pred HHHHHHHHHHHHHcch--HHHHHHHHHHHHHH-HHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHH
Confidence 8777777666655422 15556667778887 555655788889999999999999988654 5668999999999988
No 165
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=99.34 E-value=4.1e-11 Score=97.68 Aligned_cols=147 Identities=16% Similarity=0.077 Sum_probs=117.7
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhch
Q 024030 43 LDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCE 122 (273)
Q Consensus 43 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~ 122 (273)
+..++.+..+..++......+..+++..+|..+|++|||+.+....+...+...+-..+++ +.++++.|.+.|++.+
T Consensus 105 ~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spn---f~~L~~f~~l~~~g~g 181 (528)
T KOG0253|consen 105 DEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPN---FASLCVFRALWGFGVG 181 (528)
T ss_pred HhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCC---eehhhHHHHHHhccCC
Confidence 3345677777888888889999999999999999999999999999999888888889999 8899999999998544
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHH----HHhhhHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 024030 123 GSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAA----RFLSTTSAFQAATIVSMLAAAYMRVFLKDDVP 196 (273)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (273)
| . |...++-.|..|..+|..-+-.. ..+.+|.++...++ ...||||...... ..+..+....++.||+++
T Consensus 182 g-~-pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~-~pl~~~a~f~~w~~ESpR 255 (528)
T KOG0253|consen 182 G-L-PVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSS-TPLMFAARFLVWVYESPR 255 (528)
T ss_pred C-c-cHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH-hHHHHHHHHHhhcccCcc
Confidence 4 4 88899999999998888766666 77788877775554 4449998777766 333344444778899876
No 166
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.33 E-value=2.4e-10 Score=97.77 Aligned_cols=166 Identities=11% Similarity=0.005 Sum_probs=109.6
Q ss_pred hHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHH-HHHhHhhhhhHHhhhhCCchhhHHHH
Q 024030 10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGL-GTLVMMPVIGNLSDQYGRKAMLTLPL 88 (273)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~g~l~dr~grr~~~~~~~ 88 (273)
++......++...+......+.+.|++|. +.+..+.|++.....+ ...++.++.|++.||+|+|+.+..+.
T Consensus 210 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~~--------G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~ 281 (390)
T TIGR02718 210 AWSLLALALLSAMTAVSGFGLSKLYLVDA--------GWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGV 281 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHhc--------CCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 44444455555555666667788887663 5566777887777654 56677889999999999999988776
Q ss_pred HHHHHHHHHHHh-cc--CchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCCh-hhHHHHHHHHHHHHHHHHHHHHHHH
Q 024030 89 TLSIIPLAILAY-RR--SISFFYAYYALRTLTAMVCEGSINCLALAYVADNISE-RQRASAFGILLGVLSASFVCGTLAA 164 (273)
Q Consensus 89 ~~~~~~~~~~~~-~~--~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~g~~~gp~~~ 164 (273)
....+....... .. .....+.+.....+.++ ..+...+...+...+..++ +++++.+++.+...++|..+||.++
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~ 360 (390)
T TIGR02718 282 GLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSL-ITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIA 360 (390)
T ss_pred HHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 655332222211 11 00112333334444444 3455556777777777765 8899999999999999999999999
Q ss_pred HHh----hhHHHHHHHHHHHHHHH
Q 024030 165 RFL----STTSAFQAATIVSMLAA 184 (273)
Q Consensus 165 ~~l----~~~~~~~~~~~~~~~~~ 184 (273)
|.+ |++..|...+++.+++.
T Consensus 361 G~l~~~~G~~~~f~~~~~~~l~a~ 384 (390)
T TIGR02718 361 GYLTDRFGYAGGFLSGTVLAVLAI 384 (390)
T ss_pred HHHHHHHccHHHHHHHHHHHHHHH
Confidence 887 55667776665555443
No 167
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.33 E-value=8.4e-11 Score=113.67 Aligned_cols=147 Identities=12% Similarity=0.043 Sum_probs=114.4
Q ss_pred hHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHH-HHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHH
Q 024030 10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIY-LSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL 88 (273)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~ 88 (273)
++...+..++...........+|.|+.+.. +.+.. ..|++.+...++.++++++.|+++||+++|+.+.++.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~ 306 (1146)
T PRK08633 234 LWLAIIGLSYFWFISQLAQANFPAYAKEVL-------GLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGA 306 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHH
Confidence 333344444444455556677888886643 34444 6788889999999999999999999999999888888
Q ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024030 89 TLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL 167 (273)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l 167 (273)
++.+++.+++.+..+ .+.+++..++.|+ +.+...+...+++.+..|++.|++++|+.++...+|..+++.+++.+
T Consensus 307 ~~~~~~~~~~~~~~~---~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l 381 (1146)
T PRK08633 307 LGLALSLFLLPTAPS---LASVLVLFFLFGF-SAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLF 381 (1146)
T ss_pred HHHHHHHHHHHHhhh---HHHHHHHHHHHHH-HHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 877777777766665 6777777888887 55666678889999999999999999999999999998888777765
No 168
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.33 E-value=2.6e-10 Score=97.30 Aligned_cols=152 Identities=13% Similarity=0.089 Sum_probs=98.3
Q ss_pred HHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHh-c
Q 024030 23 ATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAY-R 101 (273)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~-~ 101 (273)
+......+++.+.++. .+.+....++..+...++..++.++.|++.||+|+|+.+..+..+..++..+... .
T Consensus 214 ~~~~~~~~~~~~~~~~-------~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~ 286 (382)
T PRK10091 214 GVFAWFSYIKPYMMFI-------SGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFG 286 (382)
T ss_pred HHHHHHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHH
Confidence 3333344556565442 2555667888889999999999999999999999999988887777776655443 3
Q ss_pred cCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhHHHHHHH
Q 024030 102 RSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL-----STTSAFQAA 176 (273)
Q Consensus 102 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l-----~~~~~~~~~ 176 (273)
++ .+...+..++.+++..+...+.......+..+++.++.+. .+....+|..+||.++|.+ +++..+.+.
T Consensus 287 ~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~ 361 (382)
T PRK10091 287 GM---KTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAAG--GQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPA 361 (382)
T ss_pred hh---HHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHHH--HHHHHHHHHHHHHHHhHHHHHcccCcchHHHHH
Confidence 33 3444444444444222333233333445555555555543 4567789999999999886 467777777
Q ss_pred HHHHHHHHHH
Q 024030 177 TIVSMLAAAY 186 (273)
Q Consensus 177 ~~~~~~~~~~ 186 (273)
++..++....
T Consensus 362 ~~~~~~~~~~ 371 (382)
T PRK10091 362 ALLSFAAMSS 371 (382)
T ss_pred HHHHHHHHHH
Confidence 6665544433
No 169
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.32 E-value=6e-11 Score=98.43 Aligned_cols=177 Identities=15% Similarity=0.043 Sum_probs=129.7
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHH
Q 024030 7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL 86 (273)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~ 86 (273)
+++.|.+.+..+...-++-.....+|.|++++. +.+...+|...+.+.+...+..+.+|+++||+|.+|++..
T Consensus 217 ~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~f-------g~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~ 289 (417)
T COG2223 217 NKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQF-------GLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLA 289 (417)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHH
Confidence 566777777777777777778889999997754 5556667788888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCc----hhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHH
Q 024030 87 PLTLSIIPLAILAYRRSI----SFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTL 162 (273)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~ 162 (273)
....++++..+.....+. .+.+..+...+..++ ..|.-+.....+++..+|+ +-|.+.|+.....++|+..-|.
T Consensus 290 ~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~-~~G~GnGsvfk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~ 367 (417)
T COG2223 290 VFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFV-FAGLGNGSVFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPL 367 (417)
T ss_pred HHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHH-HhccCcchheeechHHHHh-hhhHHHHHHHHhccccccchhH
Confidence 888888887776655311 113333333333333 3333345667788888874 7789999999999999888777
Q ss_pred HHHHh-----hhHHHHHHHHHHHHHHHHHHHHHhc
Q 024030 163 AARFL-----STTSAFQAATIVSMLAAAYMRVFLK 192 (273)
Q Consensus 163 ~~~~l-----~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (273)
.-+.. .+...|++...+.+++.++.+....
T Consensus 368 ~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y~ 402 (417)
T COG2223 368 AFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALYA 402 (417)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66655 4678888888888777776555443
No 170
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.32 E-value=5.1e-11 Score=105.24 Aligned_cols=137 Identities=16% Similarity=0.155 Sum_probs=89.4
Q ss_pred HHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccCc-hhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcC
Q 024030 59 IIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSI-SFFYAYYALRTLTAMVCEGSINCLALAYVADNI 137 (273)
Q Consensus 59 ~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~ 137 (273)
+..++.+++.++.++++||+|||++++.+..+..++..+..+..+. .....+....+...+++.+. .+....+.+|.+
T Consensus 343 ~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~E~~ 421 (502)
T TIGR00887 343 IALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGP-NATTFIVPGEVF 421 (502)
T ss_pred HHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCC-CchhhhhhhccC
Confidence 3445666788889999999999999888877666655544432110 00111111111111111122 245677889999
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-h-------------hHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 024030 138 SERQRASAFGILLGVLSASFVCGTLAARFL-S-------------TTSAFQAATIVSMLAAAYMRVFLKDDVPN 197 (273)
Q Consensus 138 ~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l-~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (273)
|++.|+++.|+.+....+|.+++|.+.+.+ . ....|.+.++..++..+. .+++||++.+
T Consensus 422 p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~-~~~lpEt~~~ 494 (502)
T TIGR00887 422 PTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILF-TLLIPETKGK 494 (502)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHH-heEeccCCCC
Confidence 999999999999999999999999887765 2 134667776666665554 4667887653
No 171
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.32 E-value=1.2e-10 Score=101.03 Aligned_cols=149 Identities=15% Similarity=0.166 Sum_probs=106.0
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHH
Q 024030 8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP 87 (273)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~ 87 (273)
|.++......++...+........+.|.++.. + +....+.+.+...++.+++.+++++++||+|+|+++..+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~ 293 (437)
T TIGR00792 222 DQLLILCLAYLFYNLAFNIKNGVQVYYFTYVL-------G-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGG 293 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHcchhheeEeeec-------C-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 34444555555555555554444555543322 1 123446666777899999999999999999999999998
Q ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCC-------hhhHHHHHHHHHHHHHHHHHHH
Q 024030 88 LTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNIS-------ERQRASAFGILLGVLSASFVCG 160 (273)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~g~~~g 160 (273)
..+.+++.....+.++ ..+.+.+..++.|+ +.+...+...++++|..| ++.+|.+.|+.+....+|..++
T Consensus 294 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg 370 (437)
T TIGR00792 294 ILLMVLGYLIFFFAGS--NLPLILVLIILAGF-GQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALA 370 (437)
T ss_pred HHHHHHHHHHHHHcch--hHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHH
Confidence 8887777766655432 14556666677776 555666788889888865 4567999999999999999999
Q ss_pred HHHHHHh
Q 024030 161 TLAARFL 167 (273)
Q Consensus 161 p~~~~~l 167 (273)
+.+.+.+
T Consensus 371 ~~i~g~l 377 (437)
T TIGR00792 371 GFLVGLI 377 (437)
T ss_pred HHHHHHH
Confidence 9888876
No 172
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=99.30 E-value=3.6e-10 Score=97.50 Aligned_cols=180 Identities=31% Similarity=0.473 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHHhHHHhHHHHHHhhcCCCCc-chhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHH
Q 024030 14 FVTVFLWGFATMMVVPAITDVTMMALCPGLD-ECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSI 92 (273)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~ 92 (273)
....++..+..++..+..........|.... ....+....+.......+..++.++..|.++||+|||..+........
T Consensus 24 ~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~ 103 (463)
T KOG2816|consen 24 EPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTI 103 (463)
T ss_pred HHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHH
Confidence 3444555555555554333333222221111 112222223333334477889999999999999999999998888887
Q ss_pred HHHHHHHhccCchhHHHHHHHHHHHhh-hchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh----
Q 024030 93 IPLAILAYRRSISFFYAYYALRTLTAM-VCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL---- 167 (273)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l---- 167 (273)
+......+.. +|.+. +.++ |+.+.......++++|....++|....|+.+.....+..++|.+++.+
T Consensus 104 l~~~~~~~~~----~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~ 175 (463)
T KOG2816|consen 104 LPALCLLFQG----YWFFL----LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFL 175 (463)
T ss_pred HhHHHHHHHH----HHHhh----hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 7766665543 23332 2222 334455678899999999999999999999999999999999999887
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Q 024030 168 STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDD 201 (273)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (273)
+.-.+|.+..+..++..+...+++||+..+++++
T Consensus 176 ~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~ 209 (463)
T KOG2816|consen 176 GIALVFLIAAASGILSLLYMLLFLPESLQEKERS 209 (463)
T ss_pred CchHHHHHHHHHHHHHHHHHhhccccccCccccc
Confidence 5567788888888888888788899987766653
No 173
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=99.29 E-value=5.8e-10 Score=96.13 Aligned_cols=177 Identities=12% Similarity=0.026 Sum_probs=112.0
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHH
Q 024030 7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL 86 (273)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~ 86 (273)
++..|.+.+..++...++.....++|.|.++... + .+ .........+...+..|++|+++||+|+|+++.+
T Consensus 251 ~~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~~----~--~~---~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~ 321 (462)
T PRK15034 251 RLHLWLLSLLYLATFGSFIGFSAGFAMLAKTQFP----D--VN---ILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLI 321 (462)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----h--HH---HHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHH
Confidence 3455666666665555555566688888876421 1 11 1112233467788999999999999999999998
Q ss_pred HHHHHHHHHHH-HHhccC--chhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCCh---------------------hhH
Q 024030 87 PLTLSIIPLAI-LAYRRS--ISFFYAYYALRTLTAMVCEGSINCLALAYVADNISE---------------------RQR 142 (273)
Q Consensus 87 ~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~---------------------~~r 142 (273)
+.+...+.... +...+. ..+++...+..+...+ ..|.-+....-++++.+|+ ++-
T Consensus 322 ~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~-~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (462)
T PRK15034 322 NFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFL-TAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTET 400 (462)
T ss_pred HHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHH-HhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHH
Confidence 88766665533 222322 1224544444433333 3444455667777777764 156
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHHHHhcC
Q 024030 143 ASAFGILLGVLSASFVCGTLAARFL-----STTSAFQAATIVSMLAAAYMRVFLKD 193 (273)
Q Consensus 143 ~~~~~~~~~~~~~g~~~gp~~~~~l-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (273)
|.+.|+.+....+|+.+-|.+-+.. ++...|+...+..+++..+.+...-+
T Consensus 401 g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y~r 456 (462)
T PRK15034 401 AAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVYGR 456 (462)
T ss_pred HHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6778888888888888888665544 35667888777777777776665543
No 174
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=99.28 E-value=5.1e-10 Score=97.87 Aligned_cols=171 Identities=16% Similarity=0.130 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhC-----CchhhH
Q 024030 11 SHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYG-----RKAMLT 85 (273)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g-----rr~~~~ 85 (273)
.......+..++. +.....++.++++ +++.+..+.+...+...+...+ .+++|.++||++ ||+.++
T Consensus 29 ~~~~~~y~~qGl~-~l~~~~~~~~l~~-------~lg~s~~~i~~~~sl~~lpw~~-K~l~g~l~D~~~i~G~rRr~~l~ 99 (468)
T TIGR00788 29 AIGLQVLFVKGIA-GLMRLPLSPMLTD-------DLGLDGARYQRLVGLSSLGWAL-KPFAGVMSDTFPLFGYTKRWYLV 99 (468)
T ss_pred HHHHHHHHHhhHH-HHhhhhhhHHHHH-------hcCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCCCccchHHHH
Confidence 3344455666666 5555566666644 3366777787778888888766 555999999997 666666
Q ss_pred HHHHHHH-HHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHH---HHHHHHHHHHHHHH
Q 024030 86 LPLTLSI-IPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFG---ILLGVLSASFVCGT 161 (273)
Q Consensus 86 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~~~g~~~gp 161 (273)
++.++.. +....+...++ ......+..++.++ +.+....+..++..|..+ +++....+ ......++|..+|+
T Consensus 100 ~~~~l~~~~~~~~l~~~~~--~~~~~~~~~~l~~~-~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~ 175 (468)
T TIGR00788 100 LSGLLGSAILYGLLPGKVS--SAKVAAAFIFLAAL-AKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISS 175 (468)
T ss_pred HHHHHHHHHHHHhcccccc--hHHHHHHHHHHHHH-HHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHH
Confidence 6665552 33222322222 23333446777777 566667899999999998 55444333 33334457888888
Q ss_pred HHHHHh----hhHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 024030 162 LAARFL----STTSAFQAATIVSMLAAAYMRVFLKDDV 195 (273)
Q Consensus 162 ~~~~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (273)
.++|.+ +|+..|++.+++.++..+ ...++||++
T Consensus 176 ~l~G~l~~~~~~~~~f~~~a~l~ll~~~-~~~~~~E~~ 212 (468)
T TIGR00788 176 LLGGPLLDKTLTRILFLITAALLLLQLF-VSNLSKERR 212 (468)
T ss_pred HHHHHHHHhcCcchHHHHHHHHHHHHHH-HHHhccccc
Confidence 888775 789999888877776633 356677754
No 175
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.28 E-value=5.5e-10 Score=94.65 Aligned_cols=170 Identities=17% Similarity=0.094 Sum_probs=105.0
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCc---hhh
Q 024030 8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRK---AML 84 (273)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr---~~~ 84 (273)
+.++......++.....+....++|.|+++. + .+.. .+.......+...++ .++++||.+|| +..
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~~-g-------~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~ 259 (368)
T TIGR00903 192 KDLWIIGAILGFGVALFDNLAIWLEAALRPA-G-------LEDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIY 259 (368)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-C-------CChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHH
Confidence 4566666677777777888888999999663 1 1111 244444444444444 46777776543 332
Q ss_pred HH-HHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 024030 85 TL-PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLA 163 (273)
Q Consensus 85 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~ 163 (273)
.. ..+..++.........+ .+.......+.++ ......+..+++.+|.+|++.|+++.|+.+...++|+..+|.+
T Consensus 260 ~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~ 335 (368)
T TIGR00903 260 IRAAALLIAAFFLALAFELN---RLALFAFIGIAGL-LMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALA 335 (368)
T ss_pred HHHHHHHHHHHHHHHHHccc---cHHHHHHHHHHHH-hhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHH
Confidence 32 33333333333343333 2333334444554 3333446678899999999999999999999999999888887
Q ss_pred HHHh--hhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 024030 164 ARFL--STTSAFQAATIVSMLAAAYMRVFLKDD 194 (273)
Q Consensus 164 ~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (273)
.+.+ +.+..|.+.++..++..+.+ ...+++
T Consensus 336 ~~~~~~~~~~~f~~~~~~~~i~~~~~-~~~~~~ 367 (368)
T TIGR00903 336 AMLFISSAEAYFTFLAILITIAFAIA-LLLPND 367 (368)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHH-HhCCCC
Confidence 7654 55677777766666655553 333443
No 176
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.28 E-value=2.2e-10 Score=110.75 Aligned_cols=149 Identities=15% Similarity=0.034 Sum_probs=114.0
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHH
Q 024030 8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP 87 (273)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~ 87 (273)
+.++...+..+...+.......++|.|+++.. +.+....|++.+...++.++++++.|+++|+.++++.+..+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-------g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~ 297 (1140)
T PRK06814 225 KRIWLAILGISWFWLVGAVVLSQLPLLAKETL-------GGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIG 297 (1140)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhHHHHHHHc-------CCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHH
Confidence 34555555555555555667778999987643 45567789999999999999999999999988887776666
Q ss_pred HHHHHHHHHHHHhc--------------------cCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHH
Q 024030 88 LTLSIIPLAILAYR--------------------RSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFG 147 (273)
Q Consensus 88 ~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 147 (273)
.++..+..+.+.+. .+ .|.+++..++.|+ +.+...+...+++.+.+|++.||+++|
T Consensus 298 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~p~~~~G~v~g 373 (1140)
T PRK06814 298 ALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRH---GWRILIDLFGLAA-AGGLYIVPLFAALQAWANPAHRARVIA 373 (1140)
T ss_pred HHHHHHHHHHHHhcccccccccccccchhhhhcccc---cHHHHHHHHHHHH-HHHHhHHHHHHHHHhhCCcccceeeeH
Confidence 55555444433332 33 5667777888887 566666889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 024030 148 ILLGVLSASFVCGTLAARFL 167 (273)
Q Consensus 148 ~~~~~~~~g~~~gp~~~~~l 167 (273)
..++...+|..+++.+++.+
T Consensus 374 ~~~~~~~~~~~ig~~~~g~l 393 (1140)
T PRK06814 374 ANNVLNAAFMVAGTIILALL 393 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888777
No 177
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.27 E-value=7.1e-10 Score=94.97 Aligned_cols=149 Identities=12% Similarity=0.044 Sum_probs=105.0
Q ss_pred HhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccCc
Q 024030 25 MMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSI 104 (273)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~ 104 (273)
......+|.++++.. +.+..+.|++.+...++.+++++..+++.||.++|+.+..+... .+....+.+.++
T Consensus 222 ~~~~~~~~~~~~~~l-------g~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~~-~~~~~~~~~~~~- 292 (393)
T PRK11195 222 ATLRFLVLAWAPVAL-------GITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGILM-GLVVLLMALQHS- 292 (393)
T ss_pred HHHHHHHHHHHHHHc-------CCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHH-HHHHHHHHHHhH-
Confidence 344456666765532 55566789999999999999999999999999999887777533 333333444444
Q ss_pred hhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhh-HHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHH
Q 024030 105 SFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQ-RASAFGILLGVLSASFVCGTLAARFL---STTSAFQAATIVS 180 (273)
Q Consensus 105 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~~~~g~~~gp~~~~~l---~~~~~~~~~~~~~ 180 (273)
.+...+..++.|+ +.+...+...+.+.+..|++. +|++.++.+...+++..++..+.+.+ +-+..+.+.++..
T Consensus 293 --~~~~~~~~~~~G~-~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (393)
T PRK11195 293 --LLPAYPLLILIGA-LGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVKLGVPVVAVIVGFGL 369 (393)
T ss_pred --HHHHHHHHHHHHH-hhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 5656667777887 556666778888888766654 79999999999999999998887766 3345555544433
Q ss_pred HHHHH
Q 024030 181 MLAAA 185 (273)
Q Consensus 181 ~~~~~ 185 (273)
++.+.
T Consensus 370 ~~~~~ 374 (393)
T PRK11195 370 LVALA 374 (393)
T ss_pred HHHHH
Confidence 33333
No 178
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.27 E-value=2.4e-10 Score=98.47 Aligned_cols=160 Identities=13% Similarity=0.017 Sum_probs=102.3
Q ss_pred hHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhh-HHHH
Q 024030 10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAML-TLPL 88 (273)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~-~~~~ 88 (273)
++......++.....+....++|.++++. ..+.+....+.......++..++.++.|+++||+++|+.. ....
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~------~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~ 317 (412)
T TIGR02332 244 IMLYTLAYFCLTNTLSAINIWTPQILQSF------NQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPY 317 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHH
Confidence 33344445555566677888999999762 1133445678888888999999999999999999987753 3333
Q ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-
Q 024030 89 TLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL- 167 (273)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l- 167 (273)
+...++..+.....+ .........+.+++. ....+.......|.+|+++|++++|+.+...++|..++|.+.+.+
T Consensus 318 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~ 393 (412)
T TIGR02332 318 LFAAAGWLLASATDH---NLIQLLGIIMASMGS-FSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILK 393 (412)
T ss_pred HHHHHHHHHHHhcCC---HHHHHHHHHHHHHHh-hhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhccccc
Confidence 333333322222222 122121122222211 112233445556788999999999999999999999999888776
Q ss_pred ----hhHHHHHHHHHH
Q 024030 168 ----STTSAFQAATIV 179 (273)
Q Consensus 168 ----~~~~~~~~~~~~ 179 (273)
+|+..+.+.+++
T Consensus 394 ~~~g~~~~~~~~~~~~ 409 (412)
T TIGR02332 394 DATGSFNSGLWFVAAL 409 (412)
T ss_pred ccCCCCchhHHHHHHH
Confidence 367777665543
No 179
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.27 E-value=6.4e-10 Score=95.75 Aligned_cols=171 Identities=15% Similarity=0.096 Sum_probs=114.5
Q ss_pred HHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHH
Q 024030 20 WGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILA 99 (273)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~ 99 (273)
...+.+.+..+-..++++. +.+...+-++.....+...+.++++..+.||+|||++++.+..+..+..+++.
T Consensus 282 q~sGi~ai~~Yst~i~~~a--------G~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~ 353 (485)
T KOG0569|consen 282 QFSGINAIFFYSTSIFKTA--------GFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMS 353 (485)
T ss_pred HhcCcceeHHHHHHHHHHc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444432 44445556666677888899999999999999999999999888887776655
Q ss_pred hc---cCch--hHH-HHHHHHHHHhhh-chhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHH----HHHHHHhh
Q 024030 100 YR---RSIS--FFY-AYYALRTLTAMV-CEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCG----TLAARFLS 168 (273)
Q Consensus 100 ~~---~~~~--~~~-~~~~~~~l~g~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g----p~~~~~l~ 168 (273)
.. .+.. +.+ ..+++.++..+. ..|. .|..+-+.+|++|++.|+.+++.......+..++- |.+-..+|
T Consensus 354 ~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~-gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g 432 (485)
T KOG0569|consen 354 IALFLSNSFGSWLSYLCIAAIFLFIISFAIGP-GPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIG 432 (485)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCC-CchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 32 1111 111 122333333321 2233 37888899999999999999999888777765443 55555555
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 024030 169 TTSAFQAATIVSMLAAAYMRVFLKDDVPNDDD 200 (273)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (273)
- ..|..+.+.+++..+..++.+||++.+...
T Consensus 433 ~-~~filF~i~~~~~~i~~~~~lPETkgr~~~ 463 (485)
T KOG0569|consen 433 P-YVFILFVIPLAIFLIYLYRYLPETKGRTPY 463 (485)
T ss_pred c-hhhHHHHHHHHHHHHHHHHhCcccCCCCHH
Confidence 5 667777777777888888999999765543
No 180
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.26 E-value=3.3e-10 Score=97.20 Aligned_cols=129 Identities=14% Similarity=0.058 Sum_probs=94.3
Q ss_pred HHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhh-hCCchhhHHHHHHHHHHHHHHHhccCch
Q 024030 27 VVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQ-YGRKAMLTLPLTLSIIPLAILAYRRSIS 105 (273)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~grr~~~~~~~~~~~~~~~~~~~~~~~~ 105 (273)
...++|.|.++... +....|++.+...++...+..+.+++.|| ++.|+.+..+.....++..++...++
T Consensus 227 ~~~~~p~~~~~~~~--------~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~-- 296 (400)
T PRK11646 227 VMLMLPIMVNDIAG--------SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSN-- 296 (400)
T ss_pred HHHhhhhhHHhhcC--------CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhh--
Confidence 34577888776421 22345666666666666555556666654 66666677777777777766666666
Q ss_pred hHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024030 106 FFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL 167 (273)
Q Consensus 106 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l 167 (273)
.+.+.+..++.++ +.+...+...+++.|..|+++|++++|+.+....+|..+||.++|.+
T Consensus 297 -~~~~~~~~~l~~~-g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l 356 (400)
T PRK11646 297 -LQQLFTLICLFYI-GSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWL 356 (400)
T ss_pred -HHHHHHHHHHHHH-HHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHH
Confidence 5556666666776 44556678889999999999999999999999999999999999988
No 181
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=99.25 E-value=5.1e-09 Score=88.54 Aligned_cols=181 Identities=12% Similarity=0.066 Sum_probs=137.5
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHH
Q 024030 8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP 87 (273)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~ 87 (273)
|++|.+.+........+.......|.|..+.. ++.+.+....|.+.+..-+.-.+...+..++.+|+|.|+.++++
T Consensus 220 ~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f----~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Llla 295 (412)
T PF01306_consen 220 RNFWFFVLFVIGVAAIYDVFDQQFPIYFASFF----QSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLA 295 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS----SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHH
Confidence 44554444333333344555556777776642 23366667889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 024030 88 LTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGIL-LGVLSASFVCGTLAARF 166 (273)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~~g~~~gp~~~~~ 166 (273)
..+..+=...+++.++ .+.+.+.+.+-++ -.+.......-++++.+|++..++...+. +...++|..+.+.++|.
T Consensus 296 g~i~~iRi~~~~~~~~---~~~i~~~klLH~~-e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~ 371 (412)
T PF01306_consen 296 GVIMAIRIIGSGFATN---PWVISLIKLLHAL-EFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGY 371 (412)
T ss_dssp HHHHHHHHHHHHT--S---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcc---hHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHh
Confidence 9999999999999999 8999999999997 66666678888999999999888888875 67888888888888888
Q ss_pred h----hhHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 024030 167 L----STTSAFQAATIVSMLAAAYMRVFLKDDVP 196 (273)
Q Consensus 167 l----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (273)
+ |.+.+|++.+.+.++..++..+.++++++
T Consensus 372 lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~~ 405 (412)
T PF01306_consen 372 LYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKK 405 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSS
T ss_pred hHhhcCcHHHHHHHHHHHHHHHHHheeeecCCCc
Confidence 7 66778888888777777776777765444
No 182
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=99.25 E-value=7.5e-10 Score=87.44 Aligned_cols=149 Identities=17% Similarity=0.198 Sum_probs=114.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhH
Q 024030 6 EIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLT 85 (273)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~ 85 (273)
.++.+|.+...+++......-....-|.+.++. ++.|+..+|.+.+.....+.+.+|+.|.++||+|++...+
T Consensus 262 f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~r-------fGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv 334 (459)
T KOG4686|consen 262 FYPPFWVLVIICVLYYVAWFPFITLGPMFFQKR-------FGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWV 334 (459)
T ss_pred cCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-------hCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhH
Confidence 356778888887777777666667777777664 4677777788888888888999999999999999998777
Q ss_pred HHH-HHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 024030 86 LPL-TLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAA 164 (273)
Q Consensus 86 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~ 164 (273)
.+. +....+.....+.. +.-+....+.|+ .........+..++.+.|+++.|++.|..+...++|..+-|+++
T Consensus 335 ~~a~~~tl~~H~~l~Ft~-----lsPy~~m~~lGL-sysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iia 408 (459)
T KOG4686|consen 335 ASACILTLLGHSGLFFTF-----LSPYTSMTFLGL-SYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIA 408 (459)
T ss_pred HHHHHHHHHHhhhHHhhh-----ccHHHHHHHHhh-hHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhh
Confidence 554 44445544444432 233455666777 55555455788999999999999999999999999999999999
Q ss_pred HHh
Q 024030 165 RFL 167 (273)
Q Consensus 165 ~~l 167 (273)
+.+
T Consensus 409 g~i 411 (459)
T KOG4686|consen 409 GFI 411 (459)
T ss_pred hee
Confidence 988
No 183
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=99.24 E-value=9.6e-13 Score=115.88 Aligned_cols=229 Identities=17% Similarity=0.235 Sum_probs=2.5
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhcc--------------------
Q 024030 43 LDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRR-------------------- 102 (273)
Q Consensus 43 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~-------------------- 102 (273)
+..++++..+.|++.+.+-++.++..++..++.+|.+|-|.+-+|.++.+++.+++++-+
T Consensus 30 ErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~ 109 (539)
T PF03137_consen 30 ERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSI 109 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCcccccccccccccc
Confidence 556789999999999999999999999999999998777788888888888877765310
Q ss_pred ------------------------C---chhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHH
Q 024030 103 ------------------------S---ISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSA 155 (273)
Q Consensus 103 ------------------------~---~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 155 (273)
+ ...++.++++.++.|+ ++...++...+|+-|.+++++-+...|+..+...+
T Consensus 110 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~Gi-G~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~l 188 (539)
T PF03137_consen 110 SSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGI-GATPLYTLGITYIDDNVSKKNSPLYIGILYAMSIL 188 (539)
T ss_dssp ------------------------------------------SS-S----------------------------------
T ss_pred ccccccccccccccCccccccccccccchHHHHHHHHHHHHHhc-cccCCccceeeeeccccccccCccchhhhhHHhhc
Confidence 0 0024667788999998 66667799999999999999999999999999999
Q ss_pred HHHHHHHHHHHh--------------------------hhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCC-CCCCCCC
Q 024030 156 SFVCGTLAARFL--------------------------STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDD-DLTRPII 208 (273)
Q Consensus 156 g~~~gp~~~~~l--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 208 (273)
|..+|-++++.. .||..|.+.+++.++..+. .+.+|+..++..+. ++.+...
T Consensus 189 GPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aip-l~~FPk~lp~~~~~~~~~~~~~ 267 (539)
T PF03137_consen 189 GPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIP-LFFFPKKLPGTSERQEEKESSE 267 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH-HHcCCccCCCcccccchhhhhh
Confidence 988887777653 2566677777766665555 44556544333111 1100000
Q ss_pred CCCCcccccCCCCCCCccccccccchHHHHHHHHhhcchhHHHHHHHHHhccccccceeeeeccC
Q 024030 209 TEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLVYI 273 (273)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 273 (273)
...+.......++++..+...+..+++.+.++.+.+||.+....+...+..+...++.++.|-|+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~tF~pKyl 332 (539)
T PF03137_consen 268 RKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSGFATFLPKYL 332 (539)
T ss_dssp -----------------------------------------------------------------
T ss_pred cchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000000111111111222334555566688999999999999999999999999999885
No 184
>PRK09848 glucuronide transporter; Provisional
Probab=99.24 E-value=6.1e-10 Score=97.01 Aligned_cols=152 Identities=11% Similarity=0.089 Sum_probs=108.1
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHH
Q 024030 7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL 86 (273)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~ 86 (273)
+|.+....+..++...+........|.|.++.. +.+....++......++.+++.++.+++.||+|+|+.+..
T Consensus 227 n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~ 299 (448)
T PRK09848 227 NRPLFMLCIGALCVLISTFAVSASSLFYVRYVL-------NDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLI 299 (448)
T ss_pred CchHHHHHHHHHHHHHHHHHHhhhheeeEeeec-------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 344555555555556665566666666665532 3333344444444567788899999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhh-------HHHHHHHHHHHHHHHHHH
Q 024030 87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQ-------RASAFGILLGVLSASFVC 159 (273)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~-------r~~~~~~~~~~~~~g~~~ 159 (273)
+.++.+++...+.+.+. .+.+.+.+..++.|+ +.+...+...+..+|..|.++ +|...|+.+....+|..+
T Consensus 300 g~~~~~i~~~~~~~~~~-~~~~~~~~~~~l~g~-G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~ai 377 (448)
T PRK09848 300 GALLGTCGYLLFFWVSV-WSLPVALVALAIASI-GQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAI 377 (448)
T ss_pred HHHHHHHHHHHHHHcCc-hhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHH
Confidence 98887777766665442 225666666777787 566666888999999887543 588899999999999999
Q ss_pred HHHHHHHh
Q 024030 160 GTLAARFL 167 (273)
Q Consensus 160 gp~~~~~l 167 (273)
|+.+.+.+
T Consensus 378 g~~i~g~~ 385 (448)
T PRK09848 378 GGSIPAFI 385 (448)
T ss_pred HHHHHHHH
Confidence 98887765
No 185
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.24 E-value=2.8e-09 Score=91.35 Aligned_cols=162 Identities=10% Similarity=0.099 Sum_probs=105.2
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHhH-HHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHH
Q 024030 8 KTLSHLFVTVFLWGFATMMVVPAI-TDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL 86 (273)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~ 86 (273)
+.++......+....+......++ |.+.++. +.+....|.+.....++..++.++.|++.||.+ |+.+..
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~--------g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~~ 286 (394)
T PRK10213 216 PGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLA--------GFGVDGLTLVLLSFGIASFVGTSLSSFILKRSV-KLALAG 286 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------CCChhHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhHHHH
Confidence 334443333333334443444454 5554332 455566788888889999999999999999964 444443
Q ss_pred HHHH-HHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024030 87 PLTL-SIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAAR 165 (273)
Q Consensus 87 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~ 165 (273)
+... ......+....++ .+.+.+..++.|+ +.+...+...+++.+..| ++++++.+......++|..+||.++|
T Consensus 287 ~~~~~~~~~~~l~~~~~~---~~~~~~~~~l~G~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G 361 (394)
T PRK10213 287 APLVLAVSALVLTLWGSD---KIVATGVAIIWGL-TFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGG 361 (394)
T ss_pred HHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHH-HHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4333 3333333334444 5667777888887 556666788888888887 55667788888888999999999999
Q ss_pred Hh----hhHHHHHHHHHHHHHH
Q 024030 166 FL----STTSAFQAATIVSMLA 183 (273)
Q Consensus 166 ~l----~~~~~~~~~~~~~~~~ 183 (273)
.+ +.+..+...+++..+.
T Consensus 362 ~l~~~~g~~~~~~~~~~~~~~~ 383 (394)
T PRK10213 362 YALDNIGLTSPLMLSGTLMLLT 383 (394)
T ss_pred HHHhccChhhHHHHHHHHHHHH
Confidence 88 4556666655544333
No 186
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.24 E-value=1e-09 Score=92.56 Aligned_cols=146 Identities=14% Similarity=0.079 Sum_probs=103.2
Q ss_pred hhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhh-CCchhhHHH
Q 024030 9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQY-GRKAMLTLP 87 (273)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~ 87 (273)
.++...+..++.....+....++|.|+++. +.+....|.+.+...++.++++++.|++.||+ +||+.+..+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~--------g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~ 269 (355)
T TIGR00896 198 LAWQVTVFFGLQSGLYYSLIGWLPAILISH--------GASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVL 269 (355)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--------CCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHH
Confidence 344334444444555666677889998653 44556778888999999999999999999999 456666677
Q ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024030 88 LTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNI-SERQRASAFGILLGVLSASFVCGTLAARF 166 (273)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~gp~~~~~ 166 (273)
..+..++...+.+.++. +.. ...++.|+ +.+...+...+.+.+.. ++++++...++.+....++..++|.+.|.
T Consensus 270 ~~~~~~~~~~~~~~~~~---~~~-~~~~l~g~-~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~ 344 (355)
T TIGR00896 270 AVLQLVGLCGLLFAPMH---GLW-AWALVLGL-GQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGV 344 (355)
T ss_pred HHHHHHHHHHHHHhhhh---HHH-HHHHHHHH-hhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777766666555442 211 13456677 55555567667666544 46778899999888888999999999988
Q ss_pred h
Q 024030 167 L 167 (273)
Q Consensus 167 l 167 (273)
+
T Consensus 345 l 345 (355)
T TIGR00896 345 L 345 (355)
T ss_pred H
Confidence 7
No 187
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.23 E-value=3.3e-10 Score=95.09 Aligned_cols=141 Identities=18% Similarity=0.189 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHH-HHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHH
Q 024030 13 LFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLA-IYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLS 91 (273)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~ 91 (273)
.....+...........++|.|+++. .+.+ ....+...+...+...++.++.|+++||+|+|+.........
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 283 (352)
T PF07690_consen 211 LLIAFFLFFFVFSGFSFFLPLYLQEV-------LGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLL 283 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHH-------HHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHhhcccchhhhhc-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 44444455556666888899986442 3445 577888889999999999999999999999988877777766
Q ss_pred HHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHH
Q 024030 92 IIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGT 161 (273)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp 161 (273)
.+....+.......+....+...++.|+ +.+...+...+++.|..|+++|+++.|+.+...++|..+||
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 284 ILGALGLLLLPFSSSPVWLIIALFLIGF-GFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHCCSHHHCHHHHHHHHHHHHHH-HHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 6666555544332224556667777887 66777789999999999999999999999999999999997
No 188
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.23 E-value=2.5e-09 Score=91.83 Aligned_cols=134 Identities=16% Similarity=0.114 Sum_probs=82.8
Q ss_pred hHHHHHHHHHHHHHH-HHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHH---HhccCchhHHHHHHHHHH----Hh
Q 024030 47 SLAIYLSGFQQAIIG-LGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAIL---AYRRSISFFYAYYALRTL----TA 118 (273)
Q Consensus 47 ~~~~~~~g~~~~~~~-~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l----~g 118 (273)
+.+....|++..... ++..++.++.|++.||+|+|+.+..+.....+....+ ...++ ..+.+.+..++ .|
T Consensus 241 G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~g 318 (402)
T PRK11902 241 GFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPK--HLWTMALAIGIENLCGG 318 (402)
T ss_pred CCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCC--cHHHHHHHHHHHHHHHH
Confidence 555667787776544 4578899999999999999998877666655544333 23322 14444444433 33
Q ss_pred hhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHHHHHH
Q 024030 119 MVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF----LSTTSAFQAATIVSMLAAAYM 187 (273)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~----l~~~~~~~~~~~~~~~~~~~~ 187 (273)
+ ..+...+....++.+.+|.++++. .+...+++...++.++|. .||+..|.+.++++++..++.
T Consensus 319 ~-~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~ 386 (402)
T PRK11902 319 M-GTAAFVALLMALCNRSFSATQYAL----LSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALL 386 (402)
T ss_pred H-HHHHHHHHHHHhcCCCCcHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 3 334444666667777777665543 433444554434444544 488888888887777766553
No 189
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.21 E-value=1.4e-09 Score=95.28 Aligned_cols=167 Identities=14% Similarity=0.026 Sum_probs=106.4
Q ss_pred hhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhh----
Q 024030 9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAML---- 84 (273)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~---- 84 (273)
.++...+..+....+.+....++|.|+++.. +.+....|+..+...++..++.++.|+++||.++|+..
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~-------g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~ 334 (465)
T TIGR00894 262 PVWAIWFAIFGHFWLYTILPTYLPTFISWVL-------RVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTA 334 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------CcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHH
Confidence 4555666666677777777889999987643 45556778888888999999999999999998765322
Q ss_pred ----HHHHHHHHHHHHH--HHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHH
Q 024030 85 ----TLPLTLSIIPLAI--LAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFV 158 (273)
Q Consensus 85 ----~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ 158 (273)
..+......+... ...... + .+..++...+.+. ..+...+.......|..| +.+|.+.++.+....+|..
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~ 410 (465)
T TIGR00894 335 ARKIFNGIGGLGPGIFAYALPYLSA-A-FYLTIIILTLANA-VSSGPLAGVLINSLDLAP-RFLGFIKGITGLPGFIGGL 410 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC-c-hHHHHHHHHHHHH-HhhhhhhhhhhchhhcCh-hHHHHHHHHHHHHHHHHHH
Confidence 1111111111111 112111 1 3333333333333 333333444455567666 5899999999999999999
Q ss_pred HHHHHHHHh-------hhHHHHHHHHHHHHHHHHH
Q 024030 159 CGTLAARFL-------STTSAFQAATIVSMLAAAY 186 (273)
Q Consensus 159 ~gp~~~~~l-------~~~~~~~~~~~~~~~~~~~ 186 (273)
++|.+.+.+ +|+..|.+.++..++..+.
T Consensus 411 i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~ 445 (465)
T TIGR00894 411 IASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIF 445 (465)
T ss_pred HHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 999988875 2667777776666665544
No 190
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.20 E-value=7.1e-10 Score=93.60 Aligned_cols=136 Identities=13% Similarity=0.097 Sum_probs=99.4
Q ss_pred hHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHH-HHHHhHhhhhhHHhhhhCCchhhHHHH
Q 024030 10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIG-LGTLVMMPVIGNLSDQYGRKAMLTLPL 88 (273)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~g~l~dr~grr~~~~~~~ 88 (273)
++...+..++.....+.....+|.|+++ . +.+..+.|.+..+.. ++.+++.+++|++.||+|||+.+..+.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~-------g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~ 282 (356)
T TIGR00901 211 ALLLLLLIVLYKLGDSAATVLTTLFLLD-M-------GFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFG 282 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-c-------CCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 3444444445556666777889999866 2 445566677666555 567889999999999999999988888
Q ss_pred HHHHHHHHHHHhc-cCc-------hhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q 024030 89 TLSIIPLAILAYR-RSI-------SFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLS 154 (273)
Q Consensus 89 ~~~~~~~~~~~~~-~~~-------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 154 (273)
++..+...++.+. .+. +..+.+....++.++ +.+..++...+++.|.+|+++|++.+|+.++..+
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 283 IVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAV-TGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHH-HhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 7777665554432 111 225667777778787 6677779999999999999999999999887654
No 191
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.20 E-value=7.7e-10 Score=93.68 Aligned_cols=150 Identities=13% Similarity=0.020 Sum_probs=99.1
Q ss_pred hhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHH
Q 024030 9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL 88 (273)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~ 88 (273)
.++...+..+...........+.|.|+++.. +.+....+...+...++..++.++.|+++||.++|+......
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~ 289 (379)
T TIGR00881 217 VLWYISLGYVFVYVVRTGILDWSPLYLTQEK-------GFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAV 289 (379)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------CCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHH
Confidence 3444455555556666667778888886532 445567788888889999999999999999864433222221
Q ss_pred ---HHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024030 89 ---TLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAAR 165 (273)
Q Consensus 89 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~ 165 (273)
....++.......+..+ .+...+..++.|+...+ ..+....+..|..|+++|+++.|+.+....+|..++|.+.|
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g 367 (379)
T TIGR00881 290 FFMALIIVSLLVYWLNPAAN-PLMDLICLFALGFLVYG-PQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLG 367 (379)
T ss_pred HHHHHHHHHHHHHhcCcchh-HHHHHHHHHHHHHHHhh-hhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHH
Confidence 11222222222211211 34444555566652323 33456678899999999999999999999999999999888
Q ss_pred Hh
Q 024030 166 FL 167 (273)
Q Consensus 166 ~l 167 (273)
.+
T Consensus 368 ~l 369 (379)
T TIGR00881 368 YL 369 (379)
T ss_pred HH
Confidence 77
No 192
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=99.19 E-value=4.4e-09 Score=87.06 Aligned_cols=148 Identities=11% Similarity=0.008 Sum_probs=105.5
Q ss_pred hhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHH
Q 024030 9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL 88 (273)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~ 88 (273)
.++...+..++..........+.+.|+.|. ...+.+....+...+.+..+..++++..+++.||+|+|+.+.++.
T Consensus 141 ~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~-----~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~ 215 (310)
T TIGR01272 141 HLVLGALGIFVYVGAEVSAGSFLVNFLSDP-----HALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNA 215 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 344444455554445667778899998652 223566778888999999999999999999999999999888887
Q ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024030 89 TLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLS 168 (273)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l~ 168 (273)
.+..++..+....++ .... ....+.|+ +.+..+|...+...+..|++ .+++.++. ....+|..++|.+.|.+.
T Consensus 216 ~l~~~~~~l~~~~~~---~~~~-~~~~l~g~-~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~la 288 (310)
T TIGR01272 216 FLAVLLSIGAALTHG---YVAM-WFVLALGL-FNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLA 288 (310)
T ss_pred HHHHHHHHHHHHcCC---HHHH-HHHHHHHH-HHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHH
Confidence 777776655555443 2222 23446676 55566688888888887753 45666765 566789999999888773
No 193
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=99.19 E-value=5.4e-09 Score=87.12 Aligned_cols=200 Identities=16% Similarity=0.105 Sum_probs=126.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhC-----CchhhHHH-HHHHHHHHHHHH-----hcc------CchhH
Q 024030 45 ECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYG-----RKAMLTLP-LTLSIIPLAILA-----YRR------SISFF 107 (273)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g-----rr~~~~~~-~~~~~~~~~~~~-----~~~------~~~~~ 107 (273)
+++......+...+...+.. ..++.+|..||+.+ ||..+++. .+....+..+.. ... .....
T Consensus 9 EL~vpA~lv~~lval~~~~a-p~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~ 87 (403)
T PF03209_consen 9 ELGVPAWLVALLVALHYLVA-PLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWL 87 (403)
T ss_pred HhccHHHHHHHHHHHHHHHH-HHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHH
Confidence 34666677777777766664 46999999999999 89877754 444444333332 122 01222
Q ss_pred H--HHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-h---h-H--HHHHHHHH
Q 024030 108 Y--AYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL-S---T-T--SAFQAATI 178 (273)
Q Consensus 108 ~--~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l-~---~-~--~~~~~~~~ 178 (273)
+ ...+...+.|+ +.+...+...++++|..|+|+|+++.++.....-+|.+++..+.+.+ . . | ..+...++
T Consensus 88 g~~~a~l~F~l~G~-G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~a~ 166 (403)
T PF03209_consen 88 GLALAALAFLLYGL-GVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGVAL 166 (403)
T ss_pred HHHHHHHHHHHHHh-hHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHH
Confidence 3 23345566777 55555678899999999999999999999999999999999888876 1 1 1 12222222
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchHHHHHHHHhhcchhHHHHHHHHHh
Q 024030 179 VSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFS 258 (273)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 258 (273)
+.++..++ ..+-.|++..+.. +...++.+++++.++.++++|+-+++.+..++.
T Consensus 167 i~~~l~~i-a~wg~E~r~~~~~-------------------------~~~~~~~~~f~~a~~~~~~~~~a~~f~~fl~l~ 220 (403)
T PF03209_consen 167 IALLLNLI-ALWGQEPRRSRRA-------------------------AAAERPRPPFREAWRQVWASPQARRFFVFLFLG 220 (403)
T ss_pred HHHHHHHH-HHHhcccCCcccc-------------------------cCCCCCCccHHHHHHHHHhCCChhHHHHHHHHH
Confidence 22222222 2222333222221 011122236667777788999999999999888
Q ss_pred ccccccceeeeecc
Q 024030 259 GLSEGGMQASFLVY 272 (273)
Q Consensus 259 ~~~~~~~~~~~~~y 272 (273)
.+++...+..+-+|
T Consensus 221 t~a~~~QD~iLEPy 234 (403)
T PF03209_consen 221 TLAFFMQDVILEPY 234 (403)
T ss_pred HHHHHhhHHHcCCc
Confidence 88877766555444
No 194
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=99.18 E-value=6.9e-10 Score=97.26 Aligned_cols=172 Identities=18% Similarity=0.268 Sum_probs=138.9
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCC--chhhH
Q 024030 8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGR--KAMLT 85 (273)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~gr--r~~~~ 85 (273)
+.++...+...+..+++.....++|.|..+. +.+....+.+.++..+...++.+..|.++|+... +.+..
T Consensus 298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~--------g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~ 369 (509)
T KOG2504|consen 298 PKFLLLALSNLFAYLGFNVPFVYLPSYAKSL--------GLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFL 369 (509)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------CCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHH
Confidence 4566666777777888888888899987643 5556677888999999999999999999999984 34555
Q ss_pred HHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024030 86 LPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAAR 165 (273)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~ 165 (273)
++.+..+++.....+.++ ++.++..-++.|+ ..|.+.......+.|..+.++-..+.|+.....+++..+||.++|
T Consensus 370 ~~ll~~gl~~~~~p~~~~---~~~l~~~~~~fG~-~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag 445 (509)
T KOG2504|consen 370 LTLLIAGLARLFLPFATT---YVGLIVFSILFGF-CVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAG 445 (509)
T ss_pred HHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccce
Confidence 677777777777778888 8889999999998 667675666678999999999999999999999999999999999
Q ss_pred Hh-----hhHHHHHHHHHHHHHHHHHHHHHhc
Q 024030 166 FL-----STTSAFQAATIVSMLAAAYMRVFLK 192 (273)
Q Consensus 166 ~l-----~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (273)
++ +|...|+.+++..+++... ++..+
T Consensus 446 ~~~d~tg~Y~~~f~~~g~~~~~s~~~-~~~~~ 476 (509)
T KOG2504|consen 446 LLYDITGNYDHAFYFCGLCFLLSAVL-LLILR 476 (509)
T ss_pred eeeeccCCeeeehhhcChHHHHHHHH-HHHhH
Confidence 77 4677888888877766655 33344
No 195
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.16 E-value=4.3e-09 Score=89.58 Aligned_cols=146 Identities=12% Similarity=0.106 Sum_probs=96.9
Q ss_pred hHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHH
Q 024030 10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLT 89 (273)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~ 89 (273)
++...+................|.++++.. +.+....|.+.+...++..++.++.|++.||+|+|+.+..+..
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~ 280 (385)
T TIGR00710 208 FWGYALIYGASFGGFFAFFSGAPFVYIDIM-------GVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLI 280 (385)
T ss_pred hHHHHHHHHHHHHHHHHHHHcChHHHHHHc-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 333333333334444455566677775432 4455667888888899999999999999999999999888877
Q ss_pred HHHHHHHHHHhcc--CchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHH-HHHHHHHHH
Q 024030 90 LSIIPLAILAYRR--SISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSA-SFVCGTLAA 164 (273)
Q Consensus 90 ~~~~~~~~~~~~~--~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~gp~~~ 164 (273)
...++..++.... .....+.+....++.|+ +.+...+.......|..| ++|+++.++.+..... |...+|.++
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~ 356 (385)
T TIGR00710 281 LFAVSAVLLEITAILGLGSWAMIIGPMMFVGI-GNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVS 356 (385)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHH-HHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 7666655554322 11113444555666676 445555777778888876 6789999998776654 555556555
No 196
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=99.16 E-value=3.9e-10 Score=93.81 Aligned_cols=216 Identities=13% Similarity=0.071 Sum_probs=145.0
Q ss_pred HhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhH-HHHHHHHHHHHHHHhccC
Q 024030 25 MMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLT-LPLTLSIIPLAILAYRRS 103 (273)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~-~~~~~~~~~~~~~~~~~~ 103 (273)
.....+.|.|+++..+.+..+-..+....|...++..+...+.+|+.|.++|+.|+||... ....+.+++...+.+.++
T Consensus 32 ivtt~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~ 111 (438)
T COG2270 32 IVTTFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPP 111 (438)
T ss_pred eeeeehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCC
Confidence 3445678888888655543344455567799999999999999999999999999887766 444555556666666666
Q ss_pred chhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHH--HHh--------------
Q 024030 104 ISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAA--RFL-------------- 167 (273)
Q Consensus 104 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~--~~l-------------- 167 (273)
...++..++..++..+ +....+...++++.+..++++-++..++-.....+|+.+.-+.. ...
T Consensus 112 ~s~~~~~l~~~il~~i-~~~~s~Vfyds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l 190 (438)
T COG2270 112 GSYLLLLLLFLILASI-GFEFSNVFYDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGL 190 (438)
T ss_pred CchHHHHHHHHHHHHH-hcchhheehhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeecc
Confidence 3335566666677776 44455578999999999998888887777666666655543321 111
Q ss_pred ------hhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchHHHHHHH
Q 024030 168 ------STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICL 241 (273)
Q Consensus 168 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (273)
.-|.++.+.++..++..+..++..|+.++...+ ..+......++.++.++.
T Consensus 191 ~~~~~~~~ri~~~l~A~W~li~~iPm~~~v~~~~~~~~~-----------------------~~~~l~~g~k~L~~t~k~ 247 (438)
T COG2270 191 PPADGEDVRITGLLAALWWLLFALPMILNVHDAEKISSP-----------------------PPTALRNGFKELKSTFKE 247 (438)
T ss_pred CccccccchhHHHHHHHHHHHHHhHHHhccccccccccc-----------------------chHHHHHHHHHHHHHHHH
Confidence 236777787777777666655555554432211 111222233455667777
Q ss_pred HhhcchhHHHHHHHHHhcccccc
Q 024030 242 LRSSVTLSQAAVVAFFSGLSEGG 264 (273)
Q Consensus 242 l~~~~~~~~~~~~~~~~~~~~~~ 264 (273)
.++++.+.+++++.+++.=+..+
T Consensus 248 i~~~~~i~~FLiA~~~~~DGv~t 270 (438)
T COG2270 248 IRGRKNLVLFLIARFFYIDGVNT 270 (438)
T ss_pred HhcccchHHHHHHHHHHHhhHHH
Confidence 88999999999999988655443
No 197
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.15 E-value=1e-08 Score=87.78 Aligned_cols=139 Identities=12% Similarity=-0.104 Sum_probs=83.3
Q ss_pred HHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccCchh
Q 024030 27 VVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISF 106 (273)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (273)
.....|.+.++.. +.+....|.+.+...++..++.++.|++.||+|||+.+..+.....++...+.+.++
T Consensus 222 ~~~~~~~~~~~~~-------g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~--- 291 (392)
T PRK10473 222 FVNTSPVLLMEQM-------GFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPS--- 291 (392)
T ss_pred HHHhCHHHHHHHc-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 3445566665432 444556788888889999999999999999999999999888887777776666554
Q ss_pred HHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhH-HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 024030 107 FYAYYALRTLTAMVCEGSINCLALAYVADNISERQR-ASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATI 178 (273)
Q Consensus 107 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r-~~~~~~~~~~~~~g~~~gp~~~~~l~~~~~~~~~~~ 178 (273)
.+.......+.+. +.+.. .......+..|.++| +.+.++......+|..+++.+.+.+++.......+.
T Consensus 292 ~~~~~~~~~l~~~-g~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~~~~~ 361 (392)
T PRK10473 292 HAVSLFGITLICA-GFSVG--FGVAMSQALGPFSLRAGVASSTLGIAQVCGSSLWIWLAAVLGISAWNMLIGI 361 (392)
T ss_pred HHHHHHHHHHHHH-HHHHH--hHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence 3333333333232 11111 122333444454433 444555555555666666666666666543444333
No 198
>PRK10429 melibiose:sodium symporter; Provisional
Probab=99.14 E-value=9e-10 Score=96.63 Aligned_cols=150 Identities=13% Similarity=0.118 Sum_probs=100.7
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHH
Q 024030 8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP 87 (273)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~ 87 (273)
|.+..+....++............+.|.+...+ +....+.+.+...++.+++.+++++++||+|+|+.+..+
T Consensus 231 ~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~--------~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~ 302 (473)
T PRK10429 231 DQLSCLLGMALAYNIASNIINGFAIYYFTYVIG--------DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGA 302 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 445555555555556666555555544433211 122345666666788899999999999999999999888
Q ss_pred HHHHHHHHHHHHh---ccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCCh-------hhHHHHHHHHHHHHHHHH
Q 024030 88 LTLSIIPLAILAY---RRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISE-------RQRASAFGILLGVLSASF 157 (273)
Q Consensus 88 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~ 157 (273)
..+.+++.+.... ... ...+.+++..++.|+ +.+...+...++++|..+. +..|..+|.......+|.
T Consensus 303 ~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~l~g~-~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~ 380 (473)
T PRK10429 303 SIFPVLSCGVLLLMGLAAP-HNALLIVIAGILLNI-GTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGS 380 (473)
T ss_pred HHHHHHHHHHHHHHhccCc-hhHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHH
Confidence 7766655544432 222 225556666677776 5566668889999999763 334457888888899999
Q ss_pred HHHHHHHHHh
Q 024030 158 VCGTLAARFL 167 (273)
Q Consensus 158 ~~gp~~~~~l 167 (273)
.+|+.+.|.+
T Consensus 381 al~~~i~g~~ 390 (473)
T PRK10429 381 AFAAFFIGVV 390 (473)
T ss_pred HHHHHHHHHH
Confidence 9998887765
No 199
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.14 E-value=7.3e-09 Score=88.06 Aligned_cols=147 Identities=15% Similarity=0.041 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHH
Q 024030 11 SHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTL 90 (273)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~ 90 (273)
+...+..++...+........|.+..+. .+.+..+.|.+.+...++..++.++.|++.||+|||+.+..+...
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~ 269 (377)
T PRK11102 197 LGYMLASGFSFAGMFSFLTAGPFVYIEL-------NGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWI 269 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHcCHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 3333334444444455555666666543 245566778888999999999999999999999999998887765
Q ss_pred HHHHHHHHHhcc-CchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 024030 91 SIIPLAILAYRR-SISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGV-LSASFVCGTLAARF 166 (273)
Q Consensus 91 ~~~~~~~~~~~~-~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~g~~~gp~~~~~ 166 (273)
..+......... .....+...+...+.+. ..+...+.....+.|..| ++++++.++.+.. ..+|..+++.+++.
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~~ 345 (377)
T PRK11102 270 QFIMGIWLVVSALLDLGFWALVVGVAAFVG-CVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSLA 345 (377)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444332222111 11113433333333332 233333455566777666 7899999987553 45677777776543
No 200
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.13 E-value=3.2e-10 Score=100.93 Aligned_cols=220 Identities=15% Similarity=0.211 Sum_probs=160.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhc--------------------c--
Q 024030 45 ECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYR--------------------R-- 102 (273)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~--------------------~-- 102 (273)
.+.++....|++.+.+-++..+...+..+...|..|-+.+-+|.++++++.+++++- +
T Consensus 126 RF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~ 205 (735)
T KOG3626|consen 126 RFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSS 205 (735)
T ss_pred hcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCcc
Confidence 345666668999999999999999999999999999999999999998888877641 0
Q ss_pred -------------------------Cch--hHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHH
Q 024030 103 -------------------------SIS--FFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSA 155 (273)
Q Consensus 103 -------------------------~~~--~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 155 (273)
..+ .+..++++.++.|+ +....++...+|+-|...+++-....|+..+...+
T Consensus 206 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GI-G~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~l 284 (735)
T KOG3626|consen 206 SLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGI-GATPIFTLGISYIDDNVKKKNSPLYLGILYSMAIL 284 (735)
T ss_pred ccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhc-CCCCCccCCCccccccccccCCcHHHHHHHHHHHh
Confidence 000 23356778999998 66666789999999999999999999999999999
Q ss_pred HHHHHHHHHHHh-----------------------hhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCC
Q 024030 156 SFVCGTLAARFL-----------------------STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEET 212 (273)
Q Consensus 156 g~~~gp~~~~~l-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (273)
|.++|-++++.+ .||..|.+.+.+.++..+. ++++|+..++.+++.+. +
T Consensus 285 GPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p-~f~fPk~lp~~~~~~~~-------~ 356 (735)
T KOG3626|consen 285 GPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVP-LFFFPKELPKSQKRKRA-------R 356 (735)
T ss_pred hhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHH-HHhCcccCccccccchh-------h
Confidence 999998888775 3677788888877777666 56677665544332000 0
Q ss_pred cccccCCCC--CCCccccccccchHHHHHHHHhhcchhHHHHHHHHHhccccccceeeeeccC
Q 024030 213 EGVNQNESN--SPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLVYI 273 (273)
Q Consensus 213 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 273 (273)
+.....+++ .+......+..+.+...++.+.+||.+...++...+....+.++.+++|-||
T Consensus 357 ~~~~~k~~~~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFlPKyL 419 (735)
T KOG3626|consen 357 DLHVLKTESGGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYITFLPKYL 419 (735)
T ss_pred hhcccccccccccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHHhhHHHH
Confidence 000000000 1111122222335556677788999999999999999999999999999885
No 201
>PF13347 MFS_2: MFS/sugar transport protein
Probab=99.11 E-value=5.9e-09 Score=90.32 Aligned_cols=151 Identities=17% Similarity=0.180 Sum_probs=118.9
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHH
Q 024030 7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL 86 (273)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~ 86 (273)
+|.+.......++..++........+.|.++.++.+ ...+.+.....++.+++.+++++++||+|+|+.+..
T Consensus 224 nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~--------~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~ 295 (428)
T PF13347_consen 224 NRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE--------GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYII 295 (428)
T ss_pred cchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc--------hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhh
Confidence 456666777777777888877778888877754333 234566667889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChh-------hHHHHHHHHHHHHHHHHHH
Q 024030 87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISER-------QRASAFGILLGVLSASFVC 159 (273)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~-------~r~~~~~~~~~~~~~g~~~ 159 (273)
+.++.+++.++..+.+. ++.+.+++..++.|+ +.+..++...++++|..+.+ +.|...|..+....++..+
T Consensus 296 ~~~~~~~~~~~~~~~~~-~~~~~~~i~~~l~gi-~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~l 373 (428)
T PF13347_consen 296 GLLLAALGFLLLFFLGP-GSPWLVLILFILAGI-GYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGL 373 (428)
T ss_pred hHHHHHHHHHHHHHHHh-hhHHHHHHHHHHhHh-hhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHH
Confidence 99999998888877762 117888888899998 55666689999999998743 3577888888888999988
Q ss_pred HHHHHHHh
Q 024030 160 GTLAARFL 167 (273)
Q Consensus 160 gp~~~~~l 167 (273)
++.+.+.+
T Consensus 374 a~~i~g~~ 381 (428)
T PF13347_consen 374 AGAIVGLL 381 (428)
T ss_pred HHHHHHHH
Confidence 88877655
No 202
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=99.11 E-value=1.7e-08 Score=88.47 Aligned_cols=176 Identities=15% Similarity=0.166 Sum_probs=119.2
Q ss_pred HHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCC-----chhh--H
Q 024030 13 LFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGR-----KAML--T 85 (273)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~gr-----r~~~--~ 85 (273)
+++...+....+.-..+.++.+.++.++......+. ..+++.+.+.+..++.+|+..++..|.+| +... .
T Consensus 277 l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~i---p~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~ 353 (475)
T TIGR00924 277 LFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSV---PVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFT 353 (475)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEE---CHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHH
Confidence 344444445555556667888876643222111222 25778888888888888886654444443 3333 5
Q ss_pred HHHHHHHHHHHHHHhc----c--CchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHH
Q 024030 86 LPLTLSIIPLAILAYR----R--SISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVC 159 (273)
Q Consensus 86 ~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~ 159 (273)
+|.++.+++.....+. + ...+.|++.+..++.++ +.....|...+++.+..|++.|++.+|+......+|..+
T Consensus 354 ~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~-ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l 432 (475)
T TIGR00924 354 LGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTL-GELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLL 432 (475)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH-HHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777766665531 1 11237888899999998 778888999999999999999999999999999999999
Q ss_pred HHHHHHHh----hhHHHHHHHHHHHHHHHHHHHHHhc
Q 024030 160 GTLAARFL----STTSAFQAATIVSMLAAAYMRVFLK 192 (273)
Q Consensus 160 gp~~~~~l----~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (273)
++.+.... +|...|...+++.++..++.++..|
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T TIGR00924 433 GGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP 469 (475)
T ss_pred HHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 98887765 5666666666666555555444443
No 203
>PRK10133 L-fucose transporter; Provisional
Probab=99.08 E-value=2.3e-08 Score=86.91 Aligned_cols=144 Identities=8% Similarity=-0.075 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHH
Q 024030 11 SHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTL 90 (273)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~ 90 (273)
+...+..++..........+.+.|+.+ +..+.++...|+....+.++..+++++.|++.||+|+|+++..+..+
T Consensus 261 ~~~~l~~~~~~~~~~~~~~~~~~~l~~------~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~ 334 (438)
T PRK10133 261 RWAVLAQFCYVGAQTACWSYLIRYAVE------EIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALI 334 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh------hcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 333344444444444455567777422 12367778889999999999999999999999999999998888777
Q ss_pred HHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024030 91 SIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL 167 (273)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l 167 (273)
..+...+..+.++ .+ .+....+.|+ +.+...|...+...+..|+ +.+.+.++... ..+|..++|.+.|.+
T Consensus 335 ~~~~~~~~~~~~~---~~-~~~~~~l~gl-g~~~i~P~~~s~a~~~~~~-~~~~as~l~~~-~~~g~~~~~~i~G~l 404 (438)
T PRK10133 335 AMALCLISAFAGG---HV-GLIALTLCSA-FMSIQYPTIFSLGIKNLGQ-DTKYGSSFIVM-TIIGGGIVTPVMGFV 404 (438)
T ss_pred HHHHHHHHHHcCC---hH-HHHHHHHHHH-HHHHHHHHHHHHHHcccch-hhccchhHHhH-HhccchHHHHHHHHH
Confidence 6666555555444 22 2344566777 5666779999999998875 45677777754 446777787777776
No 204
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.08 E-value=2.3e-08 Score=85.63 Aligned_cols=149 Identities=11% Similarity=0.026 Sum_probs=96.3
Q ss_pred HHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHH-HHHHHHHHHHh
Q 024030 22 FATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLT-LSIIPLAILAY 100 (273)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~-~~~~~~~~~~~ 100 (273)
.+........|.+.++.. +.+....|++.....++..+++++.+++.||++++........ ...+.......
T Consensus 221 ~~~~~~~~~~~~~~~~~~-------g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (394)
T PRK11652 221 AGIAVFEACSGVLMGAVL-------GLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGW 293 (394)
T ss_pred HHHHHHHHhChHHHHHHc-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445566665532 4445567888888888899999999999999984332222221 11111111111
Q ss_pred ccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 024030 101 RRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVS 180 (273)
Q Consensus 101 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l~~~~~~~~~~~~~ 180 (273)
... ...+.+....++.|+ +.+...+...++..|..| ++++++.++.+....+|..+++.+++.+..+..+....+..
T Consensus 294 ~~~-~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 370 (394)
T PRK11652 294 FGV-MNVWTLLVPAALFFF-GAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQTGQFSLGLLMT 370 (394)
T ss_pred hcc-ccHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHH
Confidence 111 114556666777776 556666888888888887 57899999999999999999999999885544444443333
No 205
>PRK11043 putative transporter; Provisional
Probab=99.07 E-value=3.5e-08 Score=84.66 Aligned_cols=136 Identities=12% Similarity=0.029 Sum_probs=89.9
Q ss_pred HHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHH---H
Q 024030 23 ATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAIL---A 99 (273)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~---~ 99 (273)
.........|.+.++. +.+....|+......++..++....+++.||+|+|+..........++...+ .
T Consensus 218 ~~~~~~~~~p~~~~~~--------g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (401)
T PRK11043 218 AFFAWLTGSPFILEQM--------GYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLAS 289 (401)
T ss_pred HHHHHHHHhHHHHHHc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455677776542 4445566777777788888999999999999999987655554444433222 2
Q ss_pred hccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024030 100 YRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLST 169 (273)
Q Consensus 100 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l~~ 169 (273)
.....+ .+..++...+.|+ +.+...+...+...|..| ++|+++.|+.+.....+...++.+.+.+.+
T Consensus 290 ~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~ 356 (401)
T PRK11043 290 LLSHPS-LVPLLIPFCVMAA-ANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALIS 356 (401)
T ss_pred HhccCc-HHHHHHHHHHHHH-HHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 211111 4444455556665 445555777777777766 579999999998888788888877777643
No 206
>PRK09669 putative symporter YagG; Provisional
Probab=99.07 E-value=9.1e-09 Score=89.58 Aligned_cols=112 Identities=13% Similarity=0.126 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHH
Q 024030 54 GFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYV 133 (273)
Q Consensus 54 g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~ 133 (273)
+.+.....+..+++.+++++++||+|+|+.+..+.+...+......+.+. +..+.+++..++.|+ +.+...+...+++
T Consensus 267 ~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~g~-~~~~~~~~~~am~ 344 (444)
T PRK09669 267 TLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPP-SNVWLIFALNILFNF-IQNLTTPLQWSMF 344 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCc-chHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 44555667778888999999999999999998887665544333333222 225666777778887 5566668999999
Q ss_pred HhcCChh-------hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024030 134 ADNISER-------QRASAFGILLGVLSASFVCGTLAARFL 167 (273)
Q Consensus 134 ~~~~~~~-------~r~~~~~~~~~~~~~g~~~gp~~~~~l 167 (273)
+|..+.+ ..|...|..+....+|..+||.+++.+
T Consensus 345 ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~l 385 (444)
T PRK09669 345 SDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWI 385 (444)
T ss_pred HhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988632 234567888888899999999888775
No 207
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=99.07 E-value=2e-08 Score=88.34 Aligned_cols=144 Identities=15% Similarity=0.170 Sum_probs=101.3
Q ss_pred HHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchh-------hHHHHHHHH
Q 024030 20 WGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAM-------LTLPLTLSI 92 (273)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~-------~~~~~~~~~ 92 (273)
....+......++.+.++..... ..+... ..+.+.+.+.+..++.+|+.+++.||.|+|+. +.+|.++.+
T Consensus 281 f~~~~~q~~~~l~l~~~~~~~~~--~~G~~i-~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~ 357 (489)
T PRK10207 281 FYILYAQMPTSLNFFAINNVHHE--ILGFSI-NPVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCS 357 (489)
T ss_pred HHHHHHHcccHHHHHHHHhcccc--ccceEE-CHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHH
Confidence 33444444467778877543221 112111 22445556667778899999999999999974 667777666
Q ss_pred HHHHHH-----Hhcc--CchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024030 93 IPLAIL-----AYRR--SISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAAR 165 (273)
Q Consensus 93 ~~~~~~-----~~~~--~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~ 165 (273)
++.... .... ...+.|++....++.|+ +.+...+...+++.+..|++.++.++|+.....++|..+|..+++
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~-Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~ 436 (489)
T PRK10207 358 LGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSL-GELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVAT 436 (489)
T ss_pred HHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH-HHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665432 1221 12236777788888998 888888999999999999999999999999999999999988775
Q ss_pred Hh
Q 024030 166 FL 167 (273)
Q Consensus 166 ~l 167 (273)
..
T Consensus 437 ~~ 438 (489)
T PRK10207 437 FT 438 (489)
T ss_pred Hh
Confidence 44
No 208
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=99.04 E-value=4.4e-09 Score=89.90 Aligned_cols=162 Identities=16% Similarity=0.163 Sum_probs=131.7
Q ss_pred HHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHH
Q 024030 13 LFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSI 92 (273)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~ 92 (273)
+++...+...+...+..++=.+++|.. ......|........+-++.-++.+++.+|+|+-+++..++.+..
T Consensus 376 ff~~av~mG~g~~lv~tFLfWHled~~--------~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~ 447 (618)
T KOG3762|consen 376 FFFVAVVMGAGVGLVFTFLFWHLEDLG--------GIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNV 447 (618)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcC--------CcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHH
Confidence 344555566677777888888887752 223344666666677778888899999999999999999999999
Q ss_pred HHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHH-HHHHHHHHHHHHHHHHHh----
Q 024030 93 IPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGIL-LGVLSASFVCGTLAARFL---- 167 (273)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~~g~~~gp~~~~~l---- 167 (273)
.-.+.+....+ .|..+...+++|+ ..+..+.+..+|+++..||+.|+++.++. ....++|-.+|.++||.+
T Consensus 448 ~Rf~~~S~L~n---~W~vLPieilqgi-t~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~f 523 (618)
T KOG3762|consen 448 GRFLYYSYLQN---PWMVLPIEILQGI-THALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERF 523 (618)
T ss_pred HHHHHHHHhcC---chheeeHHHHHHH-HHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheee
Confidence 99999999999 8999999999998 77888899999999999999999999988 446677888888888876
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 024030 168 STTSAFQAATIVSMLAAAY 186 (273)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~ 186 (273)
+-+..|.++++.+++.+++
T Consensus 524 g~~ttf~~~giAcl~~l~~ 542 (618)
T KOG3762|consen 524 GARTTFRIFGIACLVTLAL 542 (618)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 6688888888777666554
No 209
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=99.00 E-value=2.4e-08 Score=83.88 Aligned_cols=194 Identities=14% Similarity=-0.001 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccCc---hhHH--HHHHHHHHHhhhchh
Q 024030 49 AIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSI---SFFY--AYYALRTLTAMVCEG 123 (273)
Q Consensus 49 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~l~g~~~~~ 123 (273)
+...+-|...++.+.++...+.+-++.|++|-|....++.....++..+-..+... +.++ ....+..+.+. ...
T Consensus 77 s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~-Aq~ 155 (480)
T KOG2563|consen 77 SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAA-AQP 155 (480)
T ss_pred chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHH-hhh
Confidence 44556777888999999999999999999999999999999999988776654433 2244 56666767665 444
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh----------hhHH--HHHHHHHHHHHHHHHHHHHh
Q 024030 124 SINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----------STTS--AFQAATIVSMLAAAYMRVFL 191 (273)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l----------~~~~--~~~~~~~~~~~~~~~~~~~~ 191 (273)
.......-...-|+++++|+.+..+-..++.+|..+|.++...+ .|.. .|+...++.++.+.+..+..
T Consensus 156 Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~ 235 (480)
T KOG2563|consen 156 FILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVF 235 (480)
T ss_pred HhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44434345567789999999999999888888887776665544 2322 34434444443333333333
Q ss_pred cCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchHHHHHHHHhhcchhHHHHHHHHHhcccccccee
Q 024030 192 KDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQA 267 (273)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (273)
+++++...... .......++.+.++..++|+++..+.+++..-...+.+.++
T Consensus 236 ~~~P~tPps~s------------------------~~~~~~~~f~~si~~~~~n~~F~il~~~ygi~~g~F~~l~~ 287 (480)
T KOG2563|consen 236 TKKPPTPPSAS------------------------QAALQDASFPKSIKSCFKNRQFIILAICYGIGLGLFNSLST 287 (480)
T ss_pred CCCCCCCCchh------------------------HhhhhcCcHHHHHHHHHcCccHHHHHHHHhhhHHHHHHHHH
Confidence 43333222210 00000124666777788999998887776665544444433
No 210
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=99.00 E-value=7e-09 Score=84.92 Aligned_cols=126 Identities=19% Similarity=0.246 Sum_probs=95.1
Q ss_pred HHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccCchhH-HHHHHHHHHHhhhchhhHHHHHHHHHHhcCCh
Q 024030 61 GLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFF-YAYYALRTLTAMVCEGSINCLALAYVADNISE 139 (273)
Q Consensus 61 ~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~ 139 (273)
.+.-+-+.++.+++.||+|||+.+..+.+++.+..++.....+.+.+ .+++.+|+... +.+ .+.+.|..|++|.
T Consensus 391 slaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafis----g~f-qvaYvYtPEVyPT 465 (528)
T KOG0253|consen 391 SLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFIS----GAF-QVAYVYTPEVYPT 465 (528)
T ss_pred HHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHh----chh-eEEEEecCcccch
Confidence 56677888999999999999999999999988888777655443322 33445565543 233 5778899999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHhc
Q 024030 140 RQRASAFGILLGVLSASFVCGTLAARFL--STTSAFQAATIVSMLAAAYMRVFLK 192 (273)
Q Consensus 140 ~~r~~~~~~~~~~~~~g~~~gp~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (273)
..|+.+.|.-+....+|+++.|+++-.. ....+..+.+...+++.+... ++|
T Consensus 466 avRatgvGtcSsmaRIggI~~p~iA~~~e~s~sl~i~vy~~~~ilagIavc-ffP 519 (528)
T KOG0253|consen 466 AVRATGVGTCSSMARIGGIFSPVIAMRAELSTSLPIFVYGALFILAGIAVC-FFP 519 (528)
T ss_pred hhhhcchhhhhhHHhhhhhhhhHHHHHhccceeehHHHHHHHHHHHHHHhe-eee
Confidence 9999999999999999999999998433 334566666666666666633 445
No 211
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=99.00 E-value=4.3e-09 Score=87.14 Aligned_cols=137 Identities=12% Similarity=-0.027 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-------------------
Q 024030 107 FYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL------------------- 167 (273)
Q Consensus 107 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l------------------- 167 (273)
++.+++..++.|. +.+...+..++++++..|+|++++.+++.+..+++|..+||.+++.+
T Consensus 10 ~~~~l~~~f~~g~-G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~ 88 (310)
T TIGR01272 10 YVLFLGALFVLAS-GLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAEA 88 (310)
T ss_pred HHHHHHHHHHHHh-hHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHH
Confidence 8889999999998 77888899999999999999999999999999999999999998843
Q ss_pred -hhHHHHHHHHHHHHHHHHHHH-HHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchHHHHHHHHhhc
Q 024030 168 -STTSAFQAATIVSMLAAAYMR-VFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSS 245 (273)
Q Consensus 168 -~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 245 (273)
.|+++|++.+.+..+..++.. ...||.+++++++ .+ . ++.. ..+ ..+++
T Consensus 89 ~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~~~~~~-------------------~~-~-~~~~----~~~----~~~~~ 139 (310)
T TIGR01272 89 AKVHTPYLLLAGALAVLAIIFAFLPLPELQEADVAR-------------------VS-S-GDTT----QKT----SAFQF 139 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCCCcccccc-------------------cc-c-cccc----chh----hHHhh
Confidence 367788766555444433322 2223321111100 00 0 0000 111 14466
Q ss_pred chhHHHHHHHHHhccccccceeeeeccC
Q 024030 246 VTLSQAAVVAFFSGLSEGGMQASFLVYI 273 (273)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl 273 (273)
|.++...+..|++..++.+..+|++.|+
T Consensus 140 ~~~~l~~~~~f~yvg~e~~~~~w~~~yl 167 (310)
T TIGR01272 140 THLVLGALGIFVYVGAEVSAGSFLVNFL 167 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888889999888888774
No 212
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=98.97 E-value=1.4e-07 Score=77.29 Aligned_cols=164 Identities=17% Similarity=0.149 Sum_probs=120.1
Q ss_pred hHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhh-CCchhhHHHH
Q 024030 10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQY-GRKAMLTLPL 88 (273)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~ 88 (273)
-|.+.+...++...+|....++|.++.|. +.|..+.|...+...+.+...++....+++|. ++|+......
T Consensus 210 aW~vtLfmGlqS~~~Y~~~~WLP~ili~~--------G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~ 281 (395)
T COG2807 210 AWQVTLFMGLQSLLYYIVIGWLPAILIDR--------GLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLAL 281 (395)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHc--------CCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHH
Confidence 45555566677788899999999998875 78888999999999999999999999999965 5566666777
Q ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCCh-hhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024030 89 TLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISE-RQRASAFGILLGVLSASFVCGTLAARFL 167 (273)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~g~~~gp~~~~~l 167 (273)
.++.++...+.+.+..+.+++ .++.|+ +.|..++.....+.+-.++ ++-++-.|+.+....+=..+||.+.|.+
T Consensus 282 ~~~l~G~~G~~~~P~~~~~lw----~~llG~-G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~l 356 (395)
T COG2807 282 LLMLVGLVGLLLAPGQLPILW----ALLLGL-GQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFL 356 (395)
T ss_pred HHHHHHHHHHHHhhhhHHHHH----HHHHhC-ccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHH
Confidence 777788777777776443322 377888 4455558888888887654 4445555555555555567789999998
Q ss_pred -----hhHHHHHHHHHHHHHHHHH
Q 024030 168 -----STTSAFQAATIVSMLAAAY 186 (273)
Q Consensus 168 -----~~~~~~~~~~~~~~~~~~~ 186 (273)
+|+.+........+...+.
T Consensus 357 hDa~gsw~~~~~~l~~~~i~m~i~ 380 (395)
T COG2807 357 HDATGSWSAPLVLLALATLLMLIF 380 (395)
T ss_pred HHhcCChHHHHHHHHHHHHHHHHH
Confidence 6777777665555544444
No 213
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=98.96 E-value=2.7e-07 Score=77.87 Aligned_cols=130 Identities=14% Similarity=0.090 Sum_probs=100.8
Q ss_pred HHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChh
Q 024030 61 GLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISER 140 (273)
Q Consensus 61 ~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~ 140 (273)
.-.++...++...+.|..|.|++++++.+...+...++.+.++ .+.+-+..+..|+ ..+.- .+..+++-...|++
T Consensus 51 tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~s---v~~mq~~q~~yg~-~~a~e-vay~sYiys~v~~~ 125 (412)
T PF01770_consen 51 TYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTS---VLAMQLMQFFYGL-ATAAE-VAYYSYIYSVVDKE 125 (412)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCc---HHHHHHHHHHHHH-HHHHH-HHHHHHheeecCHH
Confidence 4556677788889999999999999999998888888888888 8889999999997 44444 68889998999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh------hhHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 024030 141 QRASAFGILLGVLSASFVCGTLAARFL------STTSAFQAATIVSMLAAAYMRVFLKDDVP 196 (273)
Q Consensus 141 ~r~~~~~~~~~~~~~g~~~gp~~~~~l------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (273)
+-.++.+......-+|..++..+|-.+ +.....++......+++++ .+++|..++
T Consensus 126 ~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~-~~fLP~~~~ 186 (412)
T PF01770_consen 126 HYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLI-ALFLPMPKR 186 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHHcCCCCc
Confidence 999999999888888888887777665 3344455554444444444 566776543
No 214
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.95 E-value=5.1e-08 Score=84.61 Aligned_cols=170 Identities=15% Similarity=0.137 Sum_probs=122.6
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCc-----
Q 024030 7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRK----- 81 (273)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr----- 81 (273)
.+.++..++..+....+.+....++|.|+++.+ +.+....|++.++..+...+...++|.++||.-+|
T Consensus 257 s~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL-------~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t 329 (466)
T KOG2532|consen 257 SPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVL-------GFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSET 329 (466)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh-------CCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchH
Confidence 346788889999999999999999999998753 56667789999999999999999999999998662
Q ss_pred ---hhh-HHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHH
Q 024030 82 ---AML-TLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASF 157 (273)
Q Consensus 82 ---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~ 157 (273)
|.+ .++....++..+.+.+.+..+....+...-+..++ .|...+....-..|. .++.-+..+|+.+....++.
T Consensus 330 ~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~--~g~~~~Gf~~~~~~~-apq~a~~l~g~~~~~~~~~~ 406 (466)
T KOG2532|consen 330 TVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGL--SGFNISGFYKNHQDI-APQHAGFVMGIINFVGALAG 406 (466)
T ss_pred hHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHH--cccchhhhHhhhhhc-cchHHHHHHHHHHHHHHHHH
Confidence 222 24555566666666666643332222222222332 233323333333333 45888999999999999999
Q ss_pred HHHHHHHHHh-------hhHHHHHHHHHHHHHHHHH
Q 024030 158 VCGTLAARFL-------STTSAFQAATIVSMLAAAY 186 (273)
Q Consensus 158 ~~gp~~~~~l-------~~~~~~~~~~~~~~~~~~~ 186 (273)
+++|.+.+.+ .|+..|.+.+++.++..+.
T Consensus 407 ~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~ 442 (466)
T KOG2532|consen 407 FIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNII 442 (466)
T ss_pred HHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchh
Confidence 9999998876 6899999998888777654
No 215
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=98.90 E-value=1.6e-06 Score=75.22 Aligned_cols=232 Identities=11% Similarity=0.124 Sum_probs=133.5
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhH-hhhhhHHhhhhCCchhhH
Q 024030 7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVM-MPVIGNLSDQYGRKAMLT 85 (273)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~g~l~dr~grr~~~~ 85 (273)
.+.+....+..++..+.++...+.=-..... .. +.+.....++.+...+...+. .++.+++++|++|++++-
T Consensus 6 ~~k~~~~~l~fF~il~~Y~iLR~lKD~lvv~-----~~--~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~ 78 (472)
T TIGR00769 6 LKKFLPLFLMFFCILFNYTILRDTKDTLVVT-----AK--GSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFY 78 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhheeec-----cc--CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHH
Confidence 4455666666677666666655543332211 00 112234566666666655555 889999999999999988
Q ss_pred HHHHHHHHHHHHHHhc--cCchh--------------------------HHHHHHHHHHHhhhchhhHHH-HHHHHHHhc
Q 024030 86 LPLTLSIIPLAILAYR--RSISF--------------------------FYAYYALRTLTAMVCEGSINC-LALAYVADN 136 (273)
Q Consensus 86 ~~~~~~~~~~~~~~~~--~~~~~--------------------------~~~~~~~~~l~g~~~~~~~~~-~~~~~~~~~ 136 (273)
.....+.....++++. ++.+. .|...+..+...+ .+....+ ..+++.+|.
T Consensus 79 ~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~el-w~~~vvS~lFW~fandi 157 (472)
T TIGR00769 79 TVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAEL-WGSVVLSLLFWGFANQI 157 (472)
T ss_pred HHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHhc
Confidence 7776666665555432 11000 2222233333333 2222323 778899999
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHhh------------hH----HHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 024030 137 ISERQRASAFGILLGVLSASFVCGTLAARFLS------------TT----SAFQAATIVSMLAAAYMRVFLKDDVPNDDD 200 (273)
Q Consensus 137 ~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l~------------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (273)
++.++-.|..++.+.+.++|..+++.+..++. |. ..+.+..+...+...+ ...+.+....+++
T Consensus 158 ~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~-~~~l~~~~~~~~~ 236 (472)
T TIGR00769 158 TTIDEAKRFYALFGLGANVALIFSGRTIKYFSKLRASLGPGVDGWHVSLKNLMVIVICSGLAIILL-YWWVNRNVLTDPR 236 (472)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccChHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcccCCcc
Confidence 99999999999999999999999998877763 11 1222222222322222 3333322211111
Q ss_pred CCCCCCCCCCCCcccccCCCCCCCccccccccchHHHHHHHHhhcchhHHHHHHHHHhccccccc
Q 024030 201 DDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGM 265 (273)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 265 (273)
. ...++ ++.+.+...+..+.++.+.|+|.++..++...+++.+...+
T Consensus 237 ~--------------~~~~~----~~~k~k~k~~~~es~k~i~~S~yL~~ia~~vi~y~~~~nlv 283 (472)
T TIGR00769 237 S--------------YNPAL----KEKKVKPKMSTMESLKFLVSSPYILDLALLVIAYGISINLV 283 (472)
T ss_pred c--------------cchhh----ccccCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 0 00000 11111223367788888999999999888888886655443
No 216
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=98.90 E-value=1.1e-07 Score=75.37 Aligned_cols=147 Identities=16% Similarity=0.125 Sum_probs=96.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccC----chhHHHHHHHHHHHhhhc
Q 024030 46 CSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRS----ISFFYAYYALRTLTAMVC 121 (273)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~g~~~ 121 (273)
++.+..+...+.+...++..+ +++.|.+.|++|+|.++.+|.+...++.......-+ ..+.|.+.+...+.|. +
T Consensus 32 l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~-s 109 (250)
T PF06813_consen 32 LGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGN-S 109 (250)
T ss_pred hCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcc-c
Confidence 344555556666666777765 588999999999999999999998888877653321 1236777777777665 4
Q ss_pred hhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh--hh-HHHHHHHHHHHHHHHHHHHHHhcCCC
Q 024030 122 EGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL--ST-TSAFQAATIVSMLAAAYMRVFLKDDV 195 (273)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (273)
.....++......+.+| ++||++.|+.-...++++.+-..+...+ +. ..-+.+.+....+..++..+++++.+
T Consensus 110 ~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~v~l~~~~~vr~~~ 185 (250)
T PF06813_consen 110 SCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVVCLVAMFFVRPVP 185 (250)
T ss_pred HHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhheeccC
Confidence 44444566666667887 6899999999999888876655554444 22 23333444444444444445555443
No 217
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=98.88 E-value=1.4e-07 Score=83.31 Aligned_cols=131 Identities=15% Similarity=0.133 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHhHhhhhhHHhhhh----CCchhhHHHHHHHHHHHHHHHhccCc------hhHHHHHHHHHHHhhhch
Q 024030 53 SGFQQAIIGLGTLVMMPVIGNLSDQY----GRKAMLTLPLTLSIIPLAILAYRRSI------SFFYAYYALRTLTAMVCE 122 (273)
Q Consensus 53 ~g~~~~~~~~~~~~~~~~~g~l~dr~----grr~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~g~~~~ 122 (273)
.++..+.+.+...+..|+.+++-+|. +.++.+.+|.++.+++........+. -+.+++....++.|+ +.
T Consensus 318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~-ge 396 (500)
T PRK09584 318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSI-GE 396 (500)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH-HH
Confidence 46666777777777777775554544 44466778888888887766544321 124578888999998 77
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh--------------hhHHHHHHHHHHHHHHH
Q 024030 123 GSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL--------------STTSAFQAATIVSMLAA 184 (273)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l--------------~~~~~~~~~~~~~~~~~ 184 (273)
....|...+++.+..|++.|++.+|.+.....+|..++..+.+.. +..+.|...++..++..
T Consensus 397 ~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a 472 (500)
T PRK09584 397 LMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIA 472 (500)
T ss_pred HHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHH
Confidence 888899999999999999999999999888888877776655421 24566666665554433
No 218
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=98.87 E-value=2.9e-08 Score=83.91 Aligned_cols=139 Identities=14% Similarity=0.050 Sum_probs=90.1
Q ss_pred hhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHH
Q 024030 9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL 88 (273)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~ 88 (273)
.++...+..+...........+.|.|.++.. +.+....|.+.+...+...++.++.|+++||+|+|+.+..+.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~ 298 (366)
T TIGR00886 226 HTWILALLYSVTFGSFLGVSSIFAMFFKDQF-------GLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSF 298 (366)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHc-------CCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHH
Confidence 3344444444444445556678888886643 444566787888888899999999999999999998887776
Q ss_pred HHHHHHHHHHHhccCch-hHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHH
Q 024030 89 TLSIIPLAILAYRRSIS-FFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSAS 156 (273)
Q Consensus 89 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g 156 (273)
.....+..+..+..... ..+...+...+.++ ..+...+...+.+++..| +++++++|+.+...++|
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 299 LGVAMGAFLVVLGLVSPLSLAVFIVLFVALFF-FSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred HHHHHHHHHHHhcCCCcchHHHHHHHHHHHHH-Hhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence 66655555444322210 13433333333333 233333566777888877 68999999988877665
No 219
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=98.87 E-value=5.9e-07 Score=78.18 Aligned_cols=189 Identities=11% Similarity=0.040 Sum_probs=131.8
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCc----chhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCC-c
Q 024030 7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLD----ECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGR-K 81 (273)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~gr-r 81 (273)
.+.++.++...++..++..-...+...+..+.+-.+++ .++...-...+....+.+...+.+++..++.+|+|+ |
T Consensus 257 P~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k 336 (477)
T TIGR01301 257 PRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGK 336 (477)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 45677788899999998887777777777653222211 112222223345556667767888888999999995 6
Q ss_pred hhhHHHHHHHHHHHHHHHhccC------------------chhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCCh--hh
Q 024030 82 AMLTLPLTLSIIPLAILAYRRS------------------ISFFYAYYALRTLTAMVCEGSINCLALAYVADNISE--RQ 141 (273)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~--~~ 141 (273)
++..++.++.+++.....+..+ ....+..++...+.|+ .-+..+...++++++..++ ++
T Consensus 337 ~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi-~~A~~~siPfal~s~~~~~~~~~ 415 (477)
T TIGR01301 337 RLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGI-PLAITYSIPFALASIRSSNLGAG 415 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhH-HHHHHHHHhHHHHHHHccccCCC
Confidence 6768887777776665553322 0002566677778888 5566668999999999985 45
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh------hhHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 024030 142 RASAFGILLGVLSASFVCGTLAARFL------STTSAFQAATIVSMLAAAYMRVFLKDDVP 196 (273)
Q Consensus 142 r~~~~~~~~~~~~~g~~~gp~~~~~l------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (273)
.|..+|+.+.+..+.+.+..+..|.+ +....+.+.++..+++.+...+.+|++++
T Consensus 416 ~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~~ 476 (477)
T TIGR01301 416 QGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPRV 476 (477)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 59999999999999998887766664 23566777778888888887888887654
No 220
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=98.86 E-value=1.4e-07 Score=80.89 Aligned_cols=152 Identities=14% Similarity=0.137 Sum_probs=112.5
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHH
Q 024030 7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL 86 (273)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~ 86 (273)
+|.+....+..++...+.......+..|.+..+ +.+.............+.+++.+++.++++|+|+|+++.+
T Consensus 235 Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~l-------g~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~ 307 (467)
T COG2211 235 NRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVL-------GDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLI 307 (467)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhhhheeEEEEc-------CChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHH
Confidence 445555666677777777777777777765543 3444555666677788888889999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhh-------HHHHHHHHHHHHHHHHHH
Q 024030 87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQ-------RASAFGILLGVLSASFVC 159 (273)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~-------r~~~~~~~~~~~~~g~~~ 159 (273)
+.++.+++..++.+.+. +..+.+++..++.++ +.+..++..+++++|..+-++ -|...|......-+|..+
T Consensus 308 ~~~~~~i~~~~~~f~~~-~~~~l~~~~~~i~~~-g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~al 385 (467)
T COG2211 308 GLLLLAVGYLLLYFTPA-GSVVLIVVALIIAGV-GTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLAL 385 (467)
T ss_pred HHHHHHHHHHHHHhhcC-cchHHHHHHHHHHHH-HhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHH
Confidence 99999999988888773 236777888888887 667777899999999876433 344556666677777777
Q ss_pred HHHHHHHh
Q 024030 160 GTLAARFL 167 (273)
Q Consensus 160 gp~~~~~l 167 (273)
+..+.++.
T Consensus 386 a~~~~g~~ 393 (467)
T COG2211 386 AGFIPGWI 393 (467)
T ss_pred HHHHHHHH
Confidence 76665554
No 221
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=98.82 E-value=6.3e-07 Score=77.24 Aligned_cols=149 Identities=7% Similarity=-0.048 Sum_probs=96.9
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHH
Q 024030 8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP 87 (273)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~ 87 (273)
+.++...+..++..........+++.|.++.... .+....+...+.+.....++.++.+++.||+++|+.+.++
T Consensus 232 ~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~------~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~ 305 (410)
T TIGR00885 232 RHYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPG------MTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAY 305 (410)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 3444445555555555555667888888653111 1112223334444566778888999999999999998888
Q ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024030 88 LTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL 167 (273)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l 167 (273)
.....+..++....++ ... .....+.|+ +.+..+|...+...+..+++.+..+.++... .+|..+.|.+.|.+
T Consensus 306 ~~~~~~~~ll~~~~~~---~~~-~~~l~~~gl-f~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~--~~Gga~~p~l~G~~ 378 (410)
T TIGR00885 306 AIIGMALCLGSIFAGG---HVG-LYCLTLCSA-FMSLMFPTIYGIALKGLGQDTKYGAAGLVMA--IIGGGIVPPLQGFI 378 (410)
T ss_pred HHHHHHHHHHHHHcCC---hHH-HHHHHHHHH-HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH--HhccchHHHHHHHH
Confidence 8888877777777655 333 344455565 3344448999999999986654334443333 38999999999988
Q ss_pred hh
Q 024030 168 ST 169 (273)
Q Consensus 168 ~~ 169 (273)
.+
T Consensus 379 ~d 380 (410)
T TIGR00885 379 ID 380 (410)
T ss_pred HH
Confidence 54
No 222
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=98.80 E-value=1.2e-06 Score=71.37 Aligned_cols=156 Identities=23% Similarity=0.288 Sum_probs=109.7
Q ss_pred HHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHH
Q 024030 17 VFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLA 96 (273)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~ 96 (273)
.+..........+..+.+..+...... . ...++..+...+...++.++.|.++||+|||+.+..+......+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~ 84 (338)
T COG0477 11 ALLLGLDLGLLSPALPLLLSTLSLSSG-----R-LLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTL 84 (338)
T ss_pred HHHHHHhcchHHHHHHHHHHHcCCCch-----h-HHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHH
Confidence 333335555566677777655311110 0 3567888888899999999999999999999888877765444444
Q ss_pred HHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCCh-hhHHHHHHHHHH-HHHHHHHHHHHHHHHh------h
Q 024030 97 ILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISE-RQRASAFGILLG-VLSASFVCGTLAARFL------S 168 (273)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~-~~~~g~~~gp~~~~~l------~ 168 (273)
...+..+ ...+.+.+.|...|+ +.+...+...+++.|..|+ ++|+...+.... ...+|..++|.+++.+ +
T Consensus 85 ~~~~~~~-~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (338)
T COG0477 85 LLALAPN-VGLALLLILRLLQGL-GGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWG 162 (338)
T ss_pred HHHhCcc-chHHHHHHHHHHHHh-hhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4444443 337888889998888 5566778999999999997 678888888877 5778888888776655 4
Q ss_pred hHHHHHHHHHHH
Q 024030 169 TTSAFQAATIVS 180 (273)
Q Consensus 169 ~~~~~~~~~~~~ 180 (273)
|+..+.......
T Consensus 163 ~~~~~~~~~~~~ 174 (338)
T COG0477 163 WRAAFLLAALLG 174 (338)
T ss_pred hHHHHHHHHHHH
Confidence 666554444433
No 223
>PRK11462 putative transporter; Provisional
Probab=98.78 E-value=2.5e-06 Score=74.73 Aligned_cols=112 Identities=11% Similarity=0.091 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHH
Q 024030 54 GFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYV 133 (273)
Q Consensus 54 g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~ 133 (273)
+.+.+.+.++.+++.+++++++||+|+|+.+..+.....+...+..+.+..+ .+.+++..++.|+ +.+...+...+++
T Consensus 266 ~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~g~-~~~~~~~l~~~m~ 343 (460)
T PRK11462 266 VAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQA-SITMFVFIFVIGV-LHQLVTPIQWVMM 343 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhH-HHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 4556677888889999999999999999887755544444333333333321 2233444455676 4455556677888
Q ss_pred HhcCChh-----hH--HHHHHHHHHHHHHHHHHHHHHHHHh
Q 024030 134 ADNISER-----QR--ASAFGILLGVLSASFVCGTLAARFL 167 (273)
Q Consensus 134 ~~~~~~~-----~r--~~~~~~~~~~~~~g~~~gp~~~~~l 167 (273)
+|..+.+ +| +...+.......+|..+|+.+++.+
T Consensus 344 ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~i 384 (460)
T PRK11462 344 SDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWM 384 (460)
T ss_pred HHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877632 33 3444666678888888888777664
No 224
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=98.78 E-value=7.3e-08 Score=84.40 Aligned_cols=123 Identities=12% Similarity=0.039 Sum_probs=98.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccC-------chhHHHHHHHHHH
Q 024030 44 DECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRS-------ISFFYAYYALRTL 116 (273)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l 116 (273)
...+.++...|.+.....++.+++....+++.+|++.|+++.++.++.+++........+ ....+.+....++
T Consensus 281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l 360 (468)
T TIGR00788 281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSII 360 (468)
T ss_pred ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHH
Confidence 356788889999999999999999999999999999999999998888877644321100 0112344455666
Q ss_pred HhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024030 117 TAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL 167 (273)
Q Consensus 117 ~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l 167 (273)
.++ ..+....+...++.+..|++.+++..++..+..++|..+++.+++.+
T Consensus 361 ~~~-~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l 410 (468)
T TIGR00788 361 AEV-LAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLL 410 (468)
T ss_pred HHH-HHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHH
Confidence 676 55566677899999999999999999999999999999999988877
No 225
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=98.78 E-value=2.3e-08 Score=84.03 Aligned_cols=153 Identities=16% Similarity=0.149 Sum_probs=103.8
Q ss_pred hhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhh----hhCCchhh
Q 024030 9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSD----QYGRKAML 84 (273)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~d----r~grr~~~ 84 (273)
.+..+....+-..++...-..+.+.|+++. +....+.+.+.....+..++.+|+.|..+| |+||||.+
T Consensus 33 ~li~v~~ia~Gvqf~wA~elsy~tPyl~~l--------Gvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPf 104 (498)
T KOG0637|consen 33 KLISVASIAAGVQFGWALELSYLTPYLQSL--------GVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPF 104 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccHHHHHc--------CCCcccccccccccccccceecccccccccccccccccccch
Confidence 344444444445566667778888888764 444455666777778889999999999999 58999988
Q ss_pred HHH-HHHHHHHHHHHHhccC--------chh------HHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHH-HHHH
Q 024030 85 TLP-LTLSIIPLAILAYRRS--------ISF------FYAYYALRTLTAMVCEGSINCLALAYVADNISERQRAS-AFGI 148 (273)
Q Consensus 85 ~~~-~~~~~~~~~~~~~~~~--------~~~------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~-~~~~ 148 (273)
+.. .....++..+..+... ... ....++...+.=+ ..-.......+++.|....+++.+ +++.
T Consensus 105 I~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~-A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~ 183 (498)
T KOG0637|consen 105 ILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDV-ANNTLQGPCRALLADLARGDAKKTRANSV 183 (498)
T ss_pred HHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHh-hhhhhhhhHHHHHHHhccChhhhhccchh
Confidence 854 4455555555544322 111 1122222223333 333555789999999987666666 9999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhH
Q 024030 149 LLGVLSASFVCGTLAARFLSTT 170 (273)
Q Consensus 149 ~~~~~~~g~~~gp~~~~~l~~~ 170 (273)
+....++|+.+|..++++.+++
T Consensus 184 f~~f~avGnvLGY~~g~y~~~~ 205 (498)
T KOG0637|consen 184 FSFFMAVGNVLGYALGSYLGLY 205 (498)
T ss_pred HHHHHHhcceeeeecccccCce
Confidence 9999999999999988888764
No 226
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=98.75 E-value=1e-06 Score=76.02 Aligned_cols=165 Identities=12% Similarity=0.053 Sum_probs=93.6
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHH
Q 024030 8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP 87 (273)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~ 87 (273)
+.++...+...+............|.++++.. +.+....|+.......+..+++.+.+++.+|..+++.....
T Consensus 218 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~-------g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 290 (413)
T PRK15403 218 RLFLTGAATLSLSYIPMMSWVAVSPVILIDAG-------GMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRA 290 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhChHHHHHhc-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHH
Confidence 34444444444455555556667788886642 45556667777667777788888888876555444443222
Q ss_pred HHHHHHHHHHHH----hccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 024030 88 LTLSIIPLAILA----YRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLA 163 (273)
Q Consensus 88 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~ 163 (273)
.....++..+.. ..++ .++..++..++.++ +.+...+...+.. ..-.+..+|++.++.+.....+..+++..
T Consensus 291 ~~~~~ig~~l~~~~~~~~~~--~~~~~~~~~~l~~~-G~~~~~p~~~~~a-l~~~~~~~G~a~a~~~~~~~~~~~~~~~~ 366 (413)
T PRK15403 291 VPIQLVGLALLIVGNLLWPH--VWLWSVLGTSLYAF-GIGLIFPTLFRFT-LFSNNLPKGTVSASLNMVILMVMAVSVEI 366 (413)
T ss_pred HHHHHHHHHHHHHHHHHccc--cHHHHHHHHHHHHH-HHHHHhHHHHHHH-hccCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 222222222221 1222 13334556666666 4455545555322 12222347899999888888888888888
Q ss_pred HHHh---hhHHHHHHHHHHHHHH
Q 024030 164 ARFL---STTSAFQAATIVSMLA 183 (273)
Q Consensus 164 ~~~l---~~~~~~~~~~~~~~~~ 183 (273)
++++ +-..+|....++..+.
T Consensus 367 ~g~~~~~~~~~~~~~~~~~~~~~ 389 (413)
T PRK15403 367 GRWLWFNGGRLPFHLLAVVAGVI 389 (413)
T ss_pred HHHHHHcCCchHHHHHHHHHHHH
Confidence 8777 3456666555554433
No 227
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=98.73 E-value=2.8e-08 Score=83.64 Aligned_cols=190 Identities=15% Similarity=0.105 Sum_probs=119.5
Q ss_pred hhHHHHHHHHHHHHHHHhHHHhHHHHHHh-hcCCCCcchhHHHHHHHHHHHHHHHH-HHhHhhhhhHHhhhhCCchhhHH
Q 024030 9 TLSHLFVTVFLWGFATMMVVPAITDVTMM-ALCPGLDECSLAIYLSGFQQAIIGLG-TLVMMPVIGNLSDQYGRKAMLTL 86 (273)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~g~l~dr~grr~~~~~ 86 (273)
.+.......|+.-++.+....+....+++ ...+++.+. ...........+..+. .+.+.++...++|+.|||++.+.
T Consensus 305 ~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~-~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~ 383 (538)
T KOG0252|consen 305 HLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTY-HELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLM 383 (538)
T ss_pred HHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchH-HHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHh
Confidence 34444556666666777777677777664 233333332 1222233333333333 34477888899999999999999
Q ss_pred HHHHHHHHHHHHHhccCch-hHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024030 87 PLTLSIIPLAILAYRRSIS-FFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAAR 165 (273)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~ 165 (273)
+..++.+..+..+...++. ....+++...+..+.+.-.-.+....+-+|.+|.+.|+...|+.....-.|.++|...-.
T Consensus 384 GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~ 463 (538)
T KOG0252|consen 384 GFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFL 463 (538)
T ss_pred hHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhh
Confidence 9999988887777554411 111222222222221111111344556699999999999999999999999999976655
Q ss_pred Hh---------hhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 024030 166 FL---------STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDD 200 (273)
Q Consensus 166 ~l---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (273)
.+ +.+..+++.+....+..+. .+++||++.+..+
T Consensus 464 ~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~-T~l~pEtk~~~le 506 (538)
T KOG0252|consen 464 YLTDHNYPPNIGVRNVFIILAGCMLLGILF-TLLIPETKGKSLE 506 (538)
T ss_pred HhhhccCCccccchHHHHHHHHHHHHhHhe-eEEeecccccCHH
Confidence 54 4578888887777766655 5667887654443
No 228
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=98.68 E-value=6.8e-07 Score=79.33 Aligned_cols=182 Identities=15% Similarity=0.096 Sum_probs=110.3
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHH
Q 024030 7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL 86 (273)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~ 86 (273)
++.+....+..+.+..+......+.+.+.+.....+ +. .....+..+...++..+...+.||+|||+.++.
T Consensus 294 ~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~-~~--------~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~ 364 (513)
T KOG0254|consen 294 KRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKS-DT--------FLASIILGVVNFLGTLVATYLVDRFGRRKLLLF 364 (513)
T ss_pred HHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCC-ch--------HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 334445556666666777778888888876632111 11 111223355566666677999999999999999
Q ss_pred HHHHHHHHHHHHHhccCc---------h--hHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHH
Q 024030 87 PLTLSIIPLAILAYRRSI---------S--FFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSA 155 (273)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~---------~--~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 155 (273)
+...+.++.++++..... . ..........+..+ ..+.. +..+.+.+|.+|.+.|+++.++......+
T Consensus 365 s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f-~~g~g-~v~w~~~sEifp~~~r~~~~s~~~~~n~~ 442 (513)
T KOG0254|consen 365 GAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSF-AIGWG-PVPWVIVSEIFPLRLRSKGASLAVAVNWL 442 (513)
T ss_pred hHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHH-hcccc-cchhhhhhccCcHhHHhhhHHHHHHHHHH
Confidence 999999888776632110 0 11112222222222 32333 56667889999999999999988776665
Q ss_pred HHHHHHHH----HHHhhhHHHHHHHHHHHHHHHH-HHHHHhcCCCCCCC
Q 024030 156 SFVCGTLA----ARFLSTTSAFQAATIVSMLAAA-YMRVFLKDDVPNDD 199 (273)
Q Consensus 156 g~~~gp~~----~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 199 (273)
...+-... ....++...|...+..+.+... .++++.||++....
T Consensus 443 ~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sl 491 (513)
T KOG0254|consen 443 WNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTL 491 (513)
T ss_pred HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcH
Confidence 54333222 1111234566666666666655 56778899866544
No 229
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=98.63 E-value=7.7e-06 Score=68.61 Aligned_cols=148 Identities=20% Similarity=0.165 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhh-hhCCchhhHHHHHH
Q 024030 12 HLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSD-QYGRKAMLTLPLTL 90 (273)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~d-r~grr~~~~~~~~~ 90 (273)
..+...++..+++++--..+-.|--+ .++++..+..-+......+.+++....|++.. |.++|+.-.+++..
T Consensus 212 ~f~~fl~l~t~a~~~QD~iLEPygg~-------Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~ 284 (403)
T PF03209_consen 212 RFFVFLFLGTLAFFMQDVILEPYGGE-------VFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLL 284 (403)
T ss_pred HHHHHHHHHHHHHHhhHHHcCCchhH-------HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 34445555566666666666666433 34666666666777778888888888888877 67777777788888
Q ss_pred HHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024030 91 SIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL 167 (273)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l 167 (273)
.+++..+...+....+.+.+....++.|+ +.|.+.....+...|..++++.|..+|.+...+.++..+|.++++.+
T Consensus 285 ~~~~f~lii~a~~~~~~~~~~~~~~l~G~-g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~ 360 (403)
T PF03209_consen 285 GALAFALIILAGPLGSPWLFRPGVFLLGL-GNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGAL 360 (403)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHH-hhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87777665554443337888899999998 77888888899999999999999999999999999999998888876
No 230
>PF12832 MFS_1_like: MFS_1 like family
Probab=98.61 E-value=4.3e-07 Score=58.35 Aligned_cols=68 Identities=21% Similarity=0.234 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHH
Q 024030 15 VTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTL 90 (273)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~ 90 (273)
...++...+.....|++|.|.++. +.+..++|.+.++..+..++++|++|.++||+++++.++.....
T Consensus 7 ~~yf~~f~~~g~~~Pfl~~~~~~~--------Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~ 74 (77)
T PF12832_consen 7 AFYFFYFAALGCLYPFLPLYLKQL--------GLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF 74 (77)
T ss_pred HHHHHHHHHHHHHHhhhhHhhhhc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence 344556667788899999998653 88889999999999999999999999999999999887765543
No 231
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=98.60 E-value=2.2e-06 Score=77.61 Aligned_cols=154 Identities=16% Similarity=0.100 Sum_probs=104.5
Q ss_pred HhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhh-hCCchhhHHHHHHHHHHHHHHHhccC
Q 024030 25 MMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQ-YGRKAMLTLPLTLSIIPLAILAYRRS 103 (273)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~grr~~~~~~~~~~~~~~~~~~~~~~ 103 (273)
+.....+..|+.+.. +.+...+..+...+....-+...++|.++|+ +|+++.+.++.++..++..+..+...
T Consensus 4 YGm~aiLvlYl~~~l-------g~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~ 76 (654)
T TIGR00926 4 YGMRTILVLYFLNFL-------GFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAI 76 (654)
T ss_pred eecHHHHHHHHHHHc-------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccC
Confidence 334455556655432 3333444445555666667788889999996 69999999999988888877765422
Q ss_pred c-----hhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChh---hHHHHHHHHHHHHHHHHHHHHHHHHHhh-------
Q 024030 104 I-----SFFYAYYALRTLTAMVCEGSINCLALAYVADNISER---QRASAFGILLGVLSASFVCGTLAARFLS------- 168 (273)
Q Consensus 104 ~-----~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---~r~~~~~~~~~~~~~g~~~gp~~~~~l~------- 168 (273)
. ......+++..+..+ +.|..-+...+...|-++++ +|.+.+.+++.+.++|+.+++.+..++.
T Consensus 77 ~~~~~~~~~~~~l~gLaLia~-G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg 155 (654)
T TIGR00926 77 PSSGHPLHDLLDLLGLALIAL-GTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFG 155 (654)
T ss_pred cccccchHHHHHHHHHHHHHh-hccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 1 011224444445454 55666688999999988753 4777888889999999999988776662
Q ss_pred ----hHHHHHHHHHHHHHHHHH
Q 024030 169 ----TTSAFQAATIVSMLAAAY 186 (273)
Q Consensus 169 ----~~~~~~~~~~~~~~~~~~ 186 (273)
|...|.+.++..++++++
T Consensus 156 ~~~~~~~aF~i~~i~m~ia~lv 177 (654)
T TIGR00926 156 CQDCYPLAFGVPAILMILALIV 177 (654)
T ss_pred cCcchHHHHHHHHHHHHHHHHH
Confidence 667777777776666555
No 232
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=98.54 E-value=1.3e-05 Score=69.61 Aligned_cols=145 Identities=19% Similarity=0.188 Sum_probs=95.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhh-----CCchhhHHHHHHHHHHHHHHHhccC-chhHHHHHHHHHHHhhh
Q 024030 47 SLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQY-----GRKAMLTLPLTLSIIPLAILAYRRS-ISFFYAYYALRTLTAMV 120 (273)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----grr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~g~~ 120 (273)
+.++.+.....+...+. -...|+.|.++|-+ .||+-++++.++..++...++..+. ..+.....+..++..+
T Consensus 21 ~ls~~~~~~~~~~~~lP-w~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~la~~- 98 (433)
T PF03092_consen 21 GLSPAQLQRLSSLASLP-WSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFLASF- 98 (433)
T ss_pred CCCHHHHHHHHHHHhCc-hHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHH-
Confidence 55555555555555555 46688899999986 2444445666666555555554333 2224444455555555
Q ss_pred chhhHHHHHHHHHHhcCC--hhhHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHHHHHHHhcC
Q 024030 121 CEGSINCLALAYVADNIS--ERQRASAFGILLGVLSASFVCGTLAARFL----STTSAFQAATIVSMLAAAYMRVFLKD 193 (273)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~--~~~r~~~~~~~~~~~~~g~~~gp~~~~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (273)
+.........+.+.|... ++.|+...+.......+|.+++..++|.+ +.+..|.+.+.+..+..+...+..+|
T Consensus 99 g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 99 GYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLEE 177 (433)
T ss_pred HHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhh
Confidence 555666788888888763 33478888888888999999998888877 55777888877777766665555665
No 233
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=98.52 E-value=8.2e-06 Score=72.56 Aligned_cols=150 Identities=17% Similarity=0.115 Sum_probs=95.5
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCch-hhHH
Q 024030 8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKA-MLTL 86 (273)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~-~~~~ 86 (273)
|.+....+..++....++....+.|.......+.+... ....++......++...+..+.|.+..+.+|-| .+++
T Consensus 310 r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~----~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~ 385 (599)
T PF06609_consen 310 RGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPIS----ITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIF 385 (599)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcc----cceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHH
Confidence 45555555666666556666677777765533222111 112456666677888888888999999887644 5556
Q ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 024030 87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLA 163 (273)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~ 163 (273)
+.++..++..+++..+..+ ....+...++.|+ +.|...........-..|++.-+.+.|+..+...+|+.+|..+
T Consensus 386 ~~~~~ta~~Gama~~~~~n-~~~~i~~~~l~g~-giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aI 460 (599)
T PF06609_consen 386 GSVLMTAFCGAMAAVRPDN-KNAAIAFLVLAGF-GIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAI 460 (599)
T ss_pred HHHHHHHHHHHHHHccCCC-cchHHHHHHHHHH-hHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHH
Confidence 7666665555555443322 2233455667776 4444434556666667889999999999999999988877543
No 234
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=98.52 E-value=1.2e-08 Score=80.83 Aligned_cols=119 Identities=16% Similarity=0.119 Sum_probs=89.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhHhhhhhHHhhh-hCCchhhHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhH
Q 024030 47 SLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQ-YGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSI 125 (273)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 125 (273)
+.......++.++++...++...++|++.|| +|-|..-++-+....++-++++.-...+.+|.+...|++.|+|+.+..
T Consensus 75 ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlA 154 (459)
T KOG4686|consen 75 NIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLA 154 (459)
T ss_pred ccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhh
Confidence 3333455677788899999999999999996 577765555555555566666543333349999999999999666655
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024030 126 NCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF 166 (273)
Q Consensus 126 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~ 166 (273)
.+.+.+...++..++.+.++|+..+...+|..+.-.+.++
T Consensus 155 -VaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ 194 (459)
T KOG4686|consen 155 -VAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPF 194 (459)
T ss_pred -hhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHH
Confidence 7889999999999999999999999999997665333333
No 235
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=98.45 E-value=3e-05 Score=56.99 Aligned_cols=101 Identities=16% Similarity=0.172 Sum_probs=80.3
Q ss_pred HHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChh
Q 024030 61 GLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISER 140 (273)
Q Consensus 61 ~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~ 140 (273)
.....+..++.+.+.+++|.|+.+++|.+...+-.... +.++ .+.++..-++.|+ +.+..++....++.+..+++
T Consensus 47 Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~---~~~l~~~s~l~G~-~~a~lW~aqg~ylt~~s~~~ 121 (156)
T PF05978_consen 47 YGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPN---SYTLYPASALLGF-GAALLWTAQGTYLTSYSTEE 121 (156)
T ss_pred HHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-Hhhh---HHHHHHHHHHHhh-hhHHhhHhhhHHHHHcCCHH
Confidence 33445555667788999999999999999888655444 3445 6788899999998 77888899999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024030 141 QRASAFGILLGVLSASFVCGTLAARF 166 (273)
Q Consensus 141 ~r~~~~~~~~~~~~~g~~~gp~~~~~ 166 (273)
+|++..++.-.....+.++|.++.-.
T Consensus 122 ~~~~~~~ifw~i~~~s~i~G~~~~~~ 147 (156)
T PF05978_consen 122 TIGRNTGIFWAIFQSSLIFGNLFLFF 147 (156)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998877777777777665443
No 236
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=98.42 E-value=6.2e-05 Score=66.04 Aligned_cols=142 Identities=11% Similarity=-0.023 Sum_probs=96.2
Q ss_pred HHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCC--chh-----hHHHHHHHHHH
Q 024030 22 FATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGR--KAM-----LTLPLTLSIIP 94 (273)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~gr--r~~-----~~~~~~~~~~~ 94 (273)
..+.-....+..|.+++++.+--.++. -.++..+.+.+..++.+|+.+++-.|.+| |.. +.+|.++.+++
T Consensus 282 ~~~~Q~~~sl~lfa~~~vd~~~~g~~i---p~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~ 358 (493)
T PRK15462 282 AFAQQGGSSISLYIDRFVNRDMFGYTV---PTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAG 358 (493)
T ss_pred HHHHHhhHHHHHHHHHhccchhcceee---CHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHH
Confidence 333444456677776654332212223 24677788899889999999988777743 211 45677777777
Q ss_pred HHHHHh----ccC--chhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHH-HHHHHHHHHHHHHHh
Q 024030 95 LAILAY----RRS--ISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGV-LSASFVCGTLAARFL 167 (273)
Q Consensus 95 ~~~~~~----~~~--~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~g~~~gp~~~~~l 167 (273)
...+.+ ... ..+.+++++..++.++ +.-...|...+.+++..|++.|++.+|.+... ..+|..++..+++..
T Consensus 359 f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~-gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~ 437 (493)
T PRK15462 359 FCILTLSARWSAMYGHSSLPLMVLGLAVMGF-AELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQT 437 (493)
T ss_pred HHHHHHHHhhcCCCCCcCHHHHHHHHHHHHH-HHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 655542 111 1246678888888887 77788899999999999999999999998663 367766666655544
No 237
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=98.37 E-value=3.4e-05 Score=64.49 Aligned_cols=150 Identities=15% Similarity=0.073 Sum_probs=110.8
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHH
Q 024030 7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL 86 (273)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~ 86 (273)
+|.+....+..++..-...+...+++.|+.+. .+.+..+.+...+.+..+.++++++..++..|+...|.+.+
T Consensus 235 ~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~-------~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf 307 (422)
T COG0738 235 NKHLRLGVLAIFLYVGAEVAIGSFLVSYLEEL-------LGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAF 307 (422)
T ss_pred ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhc-------CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 34555666777777767778888999998773 24555666777788888999999999999999999999998
Q ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024030 87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF 166 (273)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~ 166 (273)
..+...+..+...+.++ ...+... ++.|+ ..+..+|...+...+..| + -....|..-....+|+.+-|.+.|+
T Consensus 308 ~a~~~ill~~~~~l~~g---~v~~~~l-~~ig~-F~simfPTIfslal~~l~-~-~ts~~s~~l~maivGGAiiP~l~G~ 380 (422)
T COG0738 308 YALIAILLLLAVALIGG---VVALYAL-FLIGL-FNSIMFPTIFSLALKNLG-E-HTSVGSGLLVMAIVGGAIIPPLQGV 380 (422)
T ss_pred HHHHHHHHHHHHHHhcC---hHHHHHH-HHHHH-HhHHHHHHHHHHHHhccC-c-cccccceeeeeheecchHHHHHHHH
Confidence 88877777777777777 4444333 44455 445566999999999998 3 3444555555667788888999998
Q ss_pred hhhH
Q 024030 167 LSTT 170 (273)
Q Consensus 167 l~~~ 170 (273)
+..+
T Consensus 381 i~d~ 384 (422)
T COG0738 381 IADM 384 (422)
T ss_pred HHHh
Confidence 8554
No 238
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.34 E-value=9.1e-06 Score=71.10 Aligned_cols=160 Identities=11% Similarity=0.071 Sum_probs=95.0
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhh----hCCchh
Q 024030 8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQ----YGRKAM 83 (273)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr----~grr~~ 83 (273)
+.++...+..++.....+....++|.++.+. .+.+....+.+...+.++.+++.++.|.++|| ..+|..
T Consensus 273 p~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~-------~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~ 345 (495)
T KOG2533|consen 273 PGVWPFSLCYFFLKLVNYGFSYWLPLYLKSN-------GGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLL 345 (495)
T ss_pred hhHHHHHHHHHHHhhccccHHHHHHHHHHcC-------CCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHH
Confidence 4566777778888888888999999999762 14555666777788899999999999999999 667766
Q ss_pred hHHHHHHHHH-HHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhH-HHHHHHHHHHHHHHHHHHH
Q 024030 84 LTLPLTLSII-PLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQR-ASAFGILLGVLSASFVCGT 161 (273)
Q Consensus 84 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r-~~~~~~~~~~~~~g~~~gp 161 (273)
+.....+... +...+..... .+..... ++.+..+.....+......++...++.| -...+....+.+.+..++|
T Consensus 346 ~~~~~~~~~~~g~~~l~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~ 421 (495)
T KOG2533|consen 346 FIVFLCLYAIIGAISLLAAAV---LPGAYGA-FLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISG 421 (495)
T ss_pred HHHHHHHHHHHHHHHHHhhcc---chHHhHH-HHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhh
Confidence 6655444443 3233333332 1222222 2222213334446677777777665544 3444444445555444443
Q ss_pred H-HHH----HhhhHHHHHHHHH
Q 024030 162 L-AAR----FLSTTSAFQAATI 178 (273)
Q Consensus 162 ~-~~~----~l~~~~~~~~~~~ 178 (273)
. ..+ ...|...|.....
T Consensus 422 ~~~~~~~ap~y~~~~~f~~~~~ 443 (495)
T KOG2533|consen 422 QLFRSLDAPRYGWGAVFYMLVA 443 (495)
T ss_pred hhcccccCcchhhhhHHHHHHH
Confidence 3 222 2255566644333
No 239
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=98.34 E-value=4.3e-06 Score=54.27 Aligned_cols=75 Identities=20% Similarity=0.270 Sum_probs=67.4
Q ss_pred HHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHh
Q 024030 21 GFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAY 100 (273)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~ 100 (273)
.++.+...|.+|...+|. +++..+.|++.+.+.++++++.+...++.++.++++.+..+.+...+....+++
T Consensus 5 GigRFayTplLP~M~~~~--------~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~ 76 (85)
T PF06779_consen 5 GIGRFAYTPLLPLMQADG--------GLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMAL 76 (85)
T ss_pred hhHHHHHHhHhHHHHHhc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 567788899999997764 778889999999999999999999999999988889999999999999999988
Q ss_pred ccC
Q 024030 101 RRS 103 (273)
Q Consensus 101 ~~~ 103 (273)
.++
T Consensus 77 ~~~ 79 (85)
T PF06779_consen 77 THS 79 (85)
T ss_pred Hhc
Confidence 877
No 240
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=98.32 E-value=7.4e-10 Score=96.50 Aligned_cols=138 Identities=20% Similarity=0.195 Sum_probs=91.0
Q ss_pred HHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHH--h--ccCch---hHHHHHHHHHHHhhhchhhHHHHHHHHH
Q 024030 61 GLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILA--Y--RRSIS---FFYAYYALRTLTAMVCEGSINCLALAYV 133 (273)
Q Consensus 61 ~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~--~--~~~~~---~~~~~~~~~~l~g~~~~~~~~~~~~~~~ 133 (273)
.+...++.+....+.||+|||++++.+....+++...++ . ..+.. ....+ +...+...+......+....+.
T Consensus 296 ~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~l~~~~~~~g~~~~~~~~~ 374 (451)
T PF00083_consen 296 GLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSI-VFLALFFAFFSLGWGPLPWIYT 374 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-eeeeeccccccccccccccccc
Confidence 344556667777999999999999988888777666553 1 11210 11111 1111111112212336677888
Q ss_pred HhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 024030 134 ADNISERQRASAFGILLGVLSASFVCGTLAARFL----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDD 199 (273)
Q Consensus 134 ~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (273)
+|.+|.+.|+++.++......++..++|.+...+ +-...+.+.+.+.++..+..++++||++.+.-
T Consensus 375 ~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l 444 (451)
T PF00083_consen 375 AELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTL 444 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCH
Confidence 9999999999999999998888888887765554 32445666666666666666788999876543
No 241
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=98.29 E-value=0.00012 Score=63.06 Aligned_cols=170 Identities=16% Similarity=0.126 Sum_probs=101.2
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHH
Q 024030 8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP 87 (273)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~ 87 (273)
|..+.++...++...+.-+.....|.++.+.. .-+....+.....-.+..++.++..|.+.||..|.++...+
T Consensus 2 ~~~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~-------p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~ 74 (432)
T PF06963_consen 2 RALWRLYLSHFLSTWGDRMWEFAVPLFLISIF-------PGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTS 74 (432)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------CCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHH
Confidence 44556777888888888888888898887742 11223334444555777889999999999999999987766
Q ss_pred HHHHHHHHH----HHH--hcc-C-----chhHHHHHHHHHHHhhhchhhHHHHHHH------HHHhcC--ChhhHHHHHH
Q 024030 88 LTLSIIPLA----ILA--YRR-S-----ISFFYAYYALRTLTAMVCEGSINCLALA------YVADNI--SERQRASAFG 147 (273)
Q Consensus 88 ~~~~~~~~~----~~~--~~~-~-----~~~~~~~~~~~~l~g~~~~~~~~~~~~~------~~~~~~--~~~~r~~~~~ 147 (273)
.+.--++.. ++. +.. . ....+.+++...+.|. ..-.. ..... ++..+. +++.+.+.++
T Consensus 75 l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~-i~~La-s~~~~iavERDWVvvi~~~~~~~La~~NA 152 (432)
T PF06963_consen 75 LVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGA-IERLA-SIANTIAVERDWVVVIAGGDPGALARMNA 152 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHH-HHHHH-HhhhhheeccchhhhhcCCChhhHHHHHH
Confidence 554333222 111 111 1 1112223333333332 11111 22222 222333 4566777788
Q ss_pred HHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHHH
Q 024030 148 ILLGVLSASFVCGTLAARFL----STTSAFQAATIVSMLAAAY 186 (273)
Q Consensus 148 ~~~~~~~~g~~~gp~~~~~l----~~~~~~~~~~~~~~~~~~~ 186 (273)
...-...+..++||++.|.+ +.+....+.++..++...+
T Consensus 153 ~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~v 195 (432)
T PF06963_consen 153 TMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFV 195 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHH
Confidence 88778888999999999887 4455555555555555544
No 242
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=98.28 E-value=0.00023 Score=63.47 Aligned_cols=137 Identities=19% Similarity=0.137 Sum_probs=93.9
Q ss_pred HHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhH
Q 024030 63 GTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQR 142 (273)
Q Consensus 63 ~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r 142 (273)
.........+...|+.|||.....+.....++.+...........+...+...+..+ +.+........+.+|..|+..|
T Consensus 362 ~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~el~pt~~r 440 (521)
T KOG0255|consen 362 VELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKF-FIGSAFNLIFLYSAELIPTVVR 440 (521)
T ss_pred HHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHH-HHHHHHHHHHHHHHhhccHHHH
Confidence 444444555889999999999999999999988888876653321122333333222 2233334668899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 024030 143 ASAFGILLGVLSASFVCGTLAARFLST---TSAFQAATIVSMLAAAYMRVFLKDDVPNDDD 200 (273)
Q Consensus 143 ~~~~~~~~~~~~~g~~~gp~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (273)
..+.+..+....+|.+++|.+...... ...+.+.+....+...+...++||+....-.
T Consensus 441 ~~~~~~~~~~~~~~~i~ap~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~l~ 501 (521)
T KOG0255|consen 441 NTAVGAISAAARLGSILAPLFPLLLRQMFPLLGLILFGWLALLLGLLSLLLLPETKGKPLP 501 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHhcCcccCCCCCc
Confidence 999999999999999999988765532 2222223455555555556788998765543
No 243
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.27 E-value=4.2e-06 Score=69.64 Aligned_cols=166 Identities=10% Similarity=0.073 Sum_probs=108.0
Q ss_pred hHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchh--hHHH
Q 024030 10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAM--LTLP 87 (273)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~--~~~~ 87 (273)
++.........+.+..+.-|.++.+..|.++-. ..+.|+.....++.+.++..+.|.++||++.-+. -..+
T Consensus 272 I~~~agai~~~n~~lafLePtlslwm~e~m~~p-------~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~g 344 (464)
T KOG3764|consen 272 ILLIAGAITFSNSSLAFLEPTLSLWMLETMFTP-------GWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGG 344 (464)
T ss_pred HhhhhcchhhccchHHHhCcccHHHHHHhccCC-------CcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHH
Confidence 333344444566777888899999887765422 1244666666688999999999999999994333 3344
Q ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCCh---h---hHHHHHHHHHHHHHHHHHHHH
Q 024030 88 LTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISE---R---QRASAFGILLGVLSASFVCGT 161 (273)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~---~---~r~~~~~~~~~~~~~g~~~gp 161 (273)
.+....+.....+.++ +..+++-+...++ +.+...+.......+..+. + ..|...++......+|..+||
T Consensus 345 l~~~G~~~~~iP~~~~---~~~L~vp~~~l~~-~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP 420 (464)
T KOG3764|consen 345 LATVGVSSGPIPFATS---IAQLWVPNFGLGF-GIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGP 420 (464)
T ss_pred HHHHHHHhchhHhhhh---HHHHhhhhHHHHH-HHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccc
Confidence 4444444555556666 6666666666665 3333333333333443332 2 567888999999999999999
Q ss_pred HHHHHh----hhHHHHHHHHHHHHHHHHH
Q 024030 162 LAARFL----STTSAFQAATIVSMLAAAY 186 (273)
Q Consensus 162 ~~~~~l----~~~~~~~~~~~~~~~~~~~ 186 (273)
.++|.+ |.+|.-.+.+...++-..+
T Consensus 421 ~~gg~iv~~iGF~wl~~iig~~n~iyapv 449 (464)
T KOG3764|consen 421 TFGGSLVEAIGFEWLMTIIGILNLIYAPV 449 (464)
T ss_pred cccchheeehhHHHHHHHHHHHHHHHHHH
Confidence 999988 6666666666655554333
No 244
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=98.20 E-value=0.00022 Score=60.49 Aligned_cols=132 Identities=12% Similarity=0.049 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHH
Q 024030 54 GFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYV 133 (273)
Q Consensus 54 g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~ 133 (273)
|.+..+..+..++..+.+.++.+|...+.-+..+..+..++.++.+++++ .+.-+++-++.++ +.|..-....++
T Consensus 62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~---v~~~l~Gv~las~-ssg~GE~tfL~l- 136 (402)
T PF02487_consen 62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPS---VWVRLLGVVLASL-SSGLGEVTFLSL- 136 (402)
T ss_pred hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccc---hhHHHHHHHHHhh-hhhhhHHHHHHH-
Confidence 55666677788888888889999988766666677778888888888777 7777777777776 444443344444
Q ss_pred HhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 024030 134 ADNISERQRASAFGILLGVLSASFVCGTLAARFL-----STTSAFQAATIVSMLAAAYMRVFLKDD 194 (273)
Q Consensus 134 ~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (273)
+..+++ ...+-++++.+.++++|+..-..+ +.|..+.....++++..+..++.+|++
T Consensus 137 t~~y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~~L~~~ 198 (402)
T PF02487_consen 137 THFYGK----SSLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFFLLPSP 198 (402)
T ss_pred HHhcCc----cccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 445553 345666777777777776543222 346667776666655554444455543
No 245
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=98.10 E-value=0.0011 Score=58.09 Aligned_cols=185 Identities=11% Similarity=0.119 Sum_probs=104.3
Q ss_pred HHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhc--c-------Cc-----------h--------hHHHHHHHH
Q 024030 63 GTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYR--R-------SI-----------S--------FFYAYYALR 114 (273)
Q Consensus 63 ~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~--~-------~~-----------~--------~~~~~~~~~ 114 (273)
..++...+..+++||++|.+++-.....+.....++++. | +. + ..|...+..
T Consensus 71 ~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfY 150 (491)
T PF03219_consen 71 VAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFY 150 (491)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHH
Confidence 345667779999999999998876666555554444421 1 10 0 012222222
Q ss_pred HHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------------HHHHHHHHHHHH
Q 024030 115 TLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLST-------------TSAFQAATIVSM 181 (273)
Q Consensus 115 ~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l~~-------------~~~~~~~~~~~~ 181 (273)
+..-+.+.-...-.-+.+.+|.++.++-.|..++.+.+.++|.+++..+...+.. ...+.....+..
T Consensus 151 v~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~v~ 230 (491)
T PF03219_consen 151 VMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAGVDAWELSLNSLMGIVL 230 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccHhHHHHHHHHHHH
Confidence 2222211112212468899999999999999999999999999988776655522 222221111111
Q ss_pred -H--HHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchHHHHHHHHhhcchhHHHHHHHHHh
Q 024030 182 -L--AAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFS 258 (273)
Q Consensus 182 -~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 258 (273)
. ........+.+....++.. .+...++..++.+.+.++.++.+.|+|.++.+++...++
T Consensus 231 ~~g~~i~~~~~~~~~~vl~~~~~------------------~~~~~~~kk~k~k~s~~es~k~l~kS~yL~~Ia~lvi~Y 292 (491)
T PF03219_consen 231 ILGIVIILLYRYMNKNVLTDPRF------------------YPSAKKKKKKKPKMSLKESFKLLLKSKYLLCIALLVIAY 292 (491)
T ss_pred HHHHHHHHHHHHHHHHccCcccc------------------chhhhcccccCCCccHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 1 1111122332221111110 001112222333447788888999999999999988888
Q ss_pred ccccccc
Q 024030 259 GLSEGGM 265 (273)
Q Consensus 259 ~~~~~~~ 265 (273)
+.+...+
T Consensus 293 gi~inLv 299 (491)
T PF03219_consen 293 GISINLV 299 (491)
T ss_pred HHHHHHH
Confidence 7765443
No 246
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=97.90 E-value=0.0016 Score=56.28 Aligned_cols=154 Identities=13% Similarity=0.120 Sum_probs=105.5
Q ss_pred HhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCc---hh----hHHHHHHHHHHHHHHHhc
Q 024030 29 PAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRK---AM----LTLPLTLSIIPLAILAYR 101 (273)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr---~~----~~~~~~~~~~~~~~~~~~ 101 (273)
..+..|..+.+..+ -++ -....++..+.+.+..++.+|+..++..+.++| +. +-++..+..++.+++...
T Consensus 305 ssl~~~a~~~v~~~--~~g-~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~ 381 (498)
T COG3104 305 SSLNLYADRNVNRQ--IFG-FEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLA 381 (498)
T ss_pred chHHHHHHHhhccc--ccc-eecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 45666665543222 122 112346778888999999999999999885544 21 234555555555444432
Q ss_pred -------cCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHH-------h
Q 024030 102 -------RSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF-------L 167 (273)
Q Consensus 102 -------~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~-------l 167 (273)
.+..+.++++...+++++ +.-+..|+..++++...|+.-.+..++.+......|..++..+++. .
T Consensus 382 ~~~~~~~~~~~s~~~lil~y~l~s~-gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~ 460 (498)
T COG3104 382 GIWFGGPSGLVSVWWLVLSYVLQSF-GELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAY 460 (498)
T ss_pred HHhhcCCCCCcCHHHHHHHHHHHHH-HHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhh
Confidence 333457888899999998 7778889999999999999999999999999999988888666652 1
Q ss_pred ---hhHHHHHHHHHHHHHHHHH
Q 024030 168 ---STTSAFQAATIVSMLAAAY 186 (273)
Q Consensus 168 ---~~~~~~~~~~~~~~~~~~~ 186 (273)
.....|..++...++....
T Consensus 461 ~~~~~~~~F~~~g~v~i~~~~~ 482 (498)
T COG3104 461 TAFIEGRVFGTIGVVAIVIGIL 482 (498)
T ss_pred hhhhhhhhHHHHHHHHHHHHHH
Confidence 3455666666666554444
No 247
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=97.81 E-value=7.7e-05 Score=59.16 Aligned_cols=78 Identities=14% Similarity=0.126 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHH
Q 024030 54 GFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYV 133 (273)
Q Consensus 54 g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~ 133 (273)
|-+.....-..++...+.|-++||.|||+.-..-++..+++++ .-.++. +-++++.|++-|+ ..+...++..++.
T Consensus 75 gqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-TKhSpq---YkVLmVGR~LGGi-aTsLLFSaFEsWl 149 (454)
T KOG4332|consen 75 GQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TKHSPQ---YKVLMVGRVLGGI-ATSLLFSAFESWL 149 (454)
T ss_pred ceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hhcCCc---eEEEeehhhhhhH-HHHHHHHHHHHHH
Confidence 3333344555677788899999999999976554444443322 223444 7889999999998 6566666766654
Q ss_pred -Hhc
Q 024030 134 -ADN 136 (273)
Q Consensus 134 -~~~ 136 (273)
.|-
T Consensus 150 iaEH 153 (454)
T KOG4332|consen 150 IAEH 153 (454)
T ss_pred HHHh
Confidence 443
No 248
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=97.81 E-value=0.00089 Score=58.39 Aligned_cols=118 Identities=16% Similarity=0.200 Sum_probs=97.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHhHhhhhh-HHhhhhCCchhhHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchh
Q 024030 45 ECSLAIYLSGFQQAIIGLGTLVMMPVIG-NLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEG 123 (273)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g-~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 123 (273)
.++++....+...+.......+++.+.. .+...+|-|+.+..|.....+....+++..+ .|.++...++.++ . +
T Consensus 271 ~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~---~w~~~~~~v~~~~-~-~ 345 (463)
T KOG2816|consen 271 KFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATE---TWMMFAAGVVVAL-A-G 345 (463)
T ss_pred ecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhcc---chhhhHHHHHHHh-h-c
Confidence 4466666677666666777777776665 7888899999999999999999999999988 7888888887775 3 4
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024030 124 SINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL 167 (273)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l 167 (273)
...+...+.++...+++++|++.++.+...++..+++|.+-+.+
T Consensus 346 ~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i 389 (463)
T KOG2816|consen 346 IVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNI 389 (463)
T ss_pred chhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHH
Confidence 55589999999999999999999999999999999998876655
No 249
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=97.80 E-value=0.00047 Score=57.44 Aligned_cols=119 Identities=20% Similarity=0.216 Sum_probs=91.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhC--CchhhHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhch
Q 024030 45 ECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYG--RKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCE 122 (273)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g--rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~ 122 (273)
.++.++.+.|-+.+...+...+.+....+..||.. -+-.+..+.....-..++....+. ...+.....+..+ ..
T Consensus 291 rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~---~~~l~~~s~l~sf-~~ 366 (451)
T KOG2615|consen 291 RFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLART---PVVLYLGSTLKSF-ST 366 (451)
T ss_pred ccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhcccc---chhhhHHHHHHHH-HH
Confidence 44666677788888888888888888888888877 555555555555555555555555 5566677777776 44
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024030 123 GSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL 167 (273)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l 167 (273)
....+....++....|.++||..+|+..+...++-.+||.++|.+
T Consensus 367 A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i 411 (451)
T KOG2615|consen 367 ASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVI 411 (451)
T ss_pred HHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhhee
Confidence 455578888999999999999999999999999999999999876
No 250
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=97.77 E-value=0.012 Score=50.99 Aligned_cols=198 Identities=12% Similarity=0.078 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHH-HHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhc--c-------C-----------c-h---
Q 024030 51 YLSGFQQAIIGL-GTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYR--R-------S-----------I-S--- 105 (273)
Q Consensus 51 ~~~g~~~~~~~~-~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~--~-------~-----------~-~--- 105 (273)
....++-+..-+ +.++..++.+++.++..+++++-.-...+....+++++. + + . +
T Consensus 61 e~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~ 140 (509)
T COG3202 61 ESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKW 140 (509)
T ss_pred hhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCcccee
Confidence 344555555555 567888899999999999998876666555555555421 0 0 0 0
Q ss_pred -----hHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----------
Q 024030 106 -----FFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLST----------- 169 (273)
Q Consensus 106 -----~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l~~----------- 169 (273)
..|...+..+..-+.+.-...-.-+...+|.+..++-.|..++++...+++..++..+..+++-
T Consensus 141 ~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~~~~~~~~~~ 220 (509)
T COG3202 141 FILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKHRDALASEFKD 220 (509)
T ss_pred eeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhHhHHHHH
Confidence 0122222222222211112222567788999999999999999999999999988887777621
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchHHHHHHHHhhcc
Q 024030 170 ---TSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSV 246 (273)
Q Consensus 170 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 246 (273)
+..+.+..+...+...+ ...+.+...+++.- . .+...+++..+.+....+.++.+.|+|
T Consensus 221 ~~~~~~~~vi~~~~~i~~~l-~~~~~r~il~~~~f---------------~--~~~~~kk~~~k~k~~~~~s~k~i~~Sk 282 (509)
T COG3202 221 LLLQILFIVIVILGIIAILL-YRYINRNVLTDPLF---------------Y--LRAKKKKKKKKLKLGLIESFKMILRSK 282 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHhhcccCcch---------------h--HHHhcccccccccCcHHHHHHHHHhhh
Confidence 11122222222222222 33332221111110 0 000111222333346778888899999
Q ss_pred hhHHHHHHHHHhccccccce
Q 024030 247 TLSQAAVVAFFSGLSEGGMQ 266 (273)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~ 266 (273)
.++...+...+++.+...++
T Consensus 283 yL~~ial~vl~Y~v~inLvE 302 (509)
T COG3202 283 YLGAIALLVLAYGVSINLVE 302 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999887765443
No 251
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.73 E-value=0.0019 Score=55.87 Aligned_cols=102 Identities=18% Similarity=0.112 Sum_probs=83.1
Q ss_pred HHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhc
Q 024030 57 QAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADN 136 (273)
Q Consensus 57 ~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~ 136 (273)
.++......+..++.+.+.|+.|.|+.+.++..........+.+.++ +.++..-.+.|+ +.+..+...-.+++|.
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~N~----y~~yfssallG~-Gaallw~GqG~ylt~~ 130 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFPNS----YYLYFSSALLGF-GAALLWTGQGGYLTSN 130 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcch----HHHHHHHHHhhh-hHHheecccceehhhc
Confidence 34445556677778899999999999999999998888777766554 677888899998 7778788889999999
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHH
Q 024030 137 ISERQRASAFGILLGVLSASFVCGTLA 163 (273)
Q Consensus 137 ~~~~~r~~~~~~~~~~~~~g~~~gp~~ 163 (273)
.+++.+.+..++.=.....+.++|..+
T Consensus 131 st~~tie~Nisi~Wai~~~~li~Ggi~ 157 (461)
T KOG3098|consen 131 STRETIERNISIFWAIGQSSLIIGGII 157 (461)
T ss_pred CChhhHHHHHHHHHHHHHHHHHhhhHh
Confidence 999999999998877777777777544
No 252
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=97.68 E-value=0.0035 Score=52.44 Aligned_cols=227 Identities=13% Similarity=0.060 Sum_probs=116.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhh-----hhCC
Q 024030 6 EIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSD-----QYGR 80 (273)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~d-----r~gr 80 (273)
.++++..+....+.+++-.+... .+|.+++.. +.|-...+.... ..--...-+.+.++.| |+||
T Consensus 29 d~~~illLl~LYllQGiP~GL~~-~iP~lL~ak--------~vSyt~~a~fS~--ay~P~sLKllWaPiVDs~y~k~~Gr 97 (510)
T KOG3574|consen 29 DRSSILLLLFLYLLQGIPLGLIG-AIPLLLQAK--------GVSYTSQAIFSF--AYWPFSLKLLWAPIVDSVYSKRFGR 97 (510)
T ss_pred hhhhHHHHHHHHHHcCCchhHhh-hhHHHhcCC--------Ccchhhhhhhhh--hhhHHHHHHHHHhhhHHHHHHhhcc
Confidence 35567777777777777777666 889888742 111111111110 1112334566888888 9999
Q ss_pred chhhHHHH-HHHHHHHHHHHhcc------Cch--hHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 024030 81 KAMLTLPL-TLSIIPLAILAYRR------SIS--FFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLG 151 (273)
Q Consensus 81 r~~~~~~~-~~~~~~~~~~~~~~------~~~--~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 151 (273)
||..+.-+ .+....+..+.... +.. .........++.-+ .++..-.+...+.-.+.++++-|-+......
T Consensus 98 rksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnf-laAtQDIAVDgwALtmLs~e~lgyaST~q~V 176 (510)
T KOG3574|consen 98 RKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNF-LAATQDIAVDGWALTMLSRENLGYASTCQSV 176 (510)
T ss_pred ccceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHH-HHhhhhhhhhHHHHHhcCHhhcCchhHHHHH
Confidence 98765322 22222222222111 111 12222223344444 4455667788888888888888777666666
Q ss_pred HHHHHHHHHHHHHHHh-----------hh---------HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCC
Q 024030 152 VLSASFVCGTLAARFL-----------ST---------TSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEE 211 (273)
Q Consensus 152 ~~~~g~~~gp~~~~~l-----------~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (273)
+.++|.++|..+--.+ +| ....++.+.+..+...++.+.-+|...+..+
T Consensus 177 g~~~GyfL~~~ifLaL~s~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~~~~~~----------- 245 (510)
T KOG3574|consen 177 GQTAGYFLGNVVFLALESPDFCNTYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKENDESVDE----------- 245 (510)
T ss_pred HHhhhHHhhcceeeEecChhhhhHHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCchhhhh-----------
Confidence 6666666553221111 11 1223344444444444434433332222111
Q ss_pred CcccccCCCCCCCccccccccchHHHHHHHHhhcchhHHHHHHHHHhccccccceeeee
Q 024030 212 TEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFL 270 (273)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (273)
+.....+...+.++.+.+-|..+.++......-+++++-+...+
T Consensus 246 ---------------e~~~~i~~~yk~l~~vLklk~v~~la~i~lt~K~gf~a~da~t~ 289 (510)
T KOG3574|consen 246 ---------------ELELGIHESYKLLRDVLKLKSVRWLAGILLTGKLGFQAADALTS 289 (510)
T ss_pred ---------------hhhcCHHHHHHHHHHHHcCccHHHHHHHHHHHHHHhhhhhhccc
Confidence 00111112233444466778888888888888777776655443
No 253
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=97.61 E-value=0.00057 Score=58.22 Aligned_cols=104 Identities=16% Similarity=0.144 Sum_probs=75.7
Q ss_pred hhhHHHHHHHHHHHHHHHhcc--Cc----hhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChh---hHHHHHHHHHHH
Q 024030 82 AMLTLPLTLSIIPLAILAYRR--SI----SFFYAYYALRTLTAMVCEGSINCLALAYVADNISER---QRASAFGILLGV 152 (273)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---~r~~~~~~~~~~ 152 (273)
|++.++.++..++.+++.++. .. ...+.++++..+.++ +.|..-+...++.+|-++++ +|.+.+.+++.+
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~-G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~ 80 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAV-GTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWG 80 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHH-HHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHh-ccccccccHHHHHHHHhcccchhhhhhhHHHHHHH
Confidence 456777788888877744322 11 123567788888888 55666699999999998765 577888899999
Q ss_pred HHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHHH
Q 024030 153 LSASFVCGTLAARFL----STTSAFQAATIVSMLAAAY 186 (273)
Q Consensus 153 ~~~g~~~gp~~~~~l----~~~~~~~~~~~~~~~~~~~ 186 (273)
.++|..+++.+.+++ +|...|.+.++..+++.+.
T Consensus 81 in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~ 118 (372)
T PF00854_consen 81 INIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIV 118 (372)
T ss_dssp HHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHH
Confidence 999999999888877 6888888887777666554
No 254
>PTZ00207 hypothetical protein; Provisional
Probab=97.59 E-value=0.00092 Score=59.99 Aligned_cols=173 Identities=12% Similarity=0.023 Sum_probs=106.4
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCc-----
Q 024030 7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRK----- 81 (273)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr----- 81 (273)
+.++|.+++..++.......+..-+.++.+..-+.+.++ ..+. ...+.+++.+++|.+..|.++...-+|
T Consensus 352 ~~d~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~-~~~~----~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r 426 (591)
T PTZ00207 352 TARLWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDD-ALNT----LLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDR 426 (591)
T ss_pred chhHHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCc-ccee----eehhhhhHHHHhhHHHHHHHHHHHHhhccccc
Confidence 457888888887766555555566666665542221111 0011 134556777778888788776222221
Q ss_pred ---hhhHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHH
Q 024030 82 ---AMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFV 158 (273)
Q Consensus 82 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ 158 (273)
+..+.....+.++.+++.+.-. ...+++.-++.|+ +.|..++...+.++|++. ++-|+-..+......+|..
T Consensus 427 ~prt~~l~~~~~~~~~~lll~~~~p---~~~L~~~~~lvg~-~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~ 501 (591)
T PTZ00207 427 VPITIALFIPSVCIITMLTLFLTLP---KAALPLPYFIAAF-ANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAI 501 (591)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHCC---ccHhHHHHHHHHH-HhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHH
Confidence 2222222224444444444433 2468888999998 778888999999999999 8888877777777777765
Q ss_pred HH-HHHHHHhh-----------------hHHHHHHHHHHHHHHHHHHHH
Q 024030 159 CG-TLAARFLS-----------------TTSAFQAATIVSMLAAAYMRV 189 (273)
Q Consensus 159 ~g-p~~~~~l~-----------------~~~~~~~~~~~~~~~~~~~~~ 189 (273)
+- -.+.|.+. .+.+|.+.++++..+.+....
T Consensus 502 ~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~ 550 (591)
T PTZ00207 502 FLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTY 550 (591)
T ss_pred HHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhh
Confidence 54 34455441 267788888888777666443
No 255
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=97.55 E-value=0.0024 Score=55.24 Aligned_cols=38 Identities=8% Similarity=-0.071 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHH
Q 024030 124 SINCLALAYVADNISERQRASAFGILLGVLSASFVCGT 161 (273)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp 161 (273)
..-.++..+.-.+.++++++.|..-...+.++|.+++-
T Consensus 134 TQDIAVDGWALT~Ls~~n~~~ASTcqtvG~~~Gyfls~ 171 (544)
T PF13000_consen 134 TQDIAVDGWALTMLSPENVGYASTCQTVGQTAGYFLSF 171 (544)
T ss_pred cCCceeehhhhhhcChhhcchHHHHHHhHhhhhHHHHH
Confidence 33346667777777888887776666666666665553
No 256
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.55 E-value=0.0066 Score=52.64 Aligned_cols=153 Identities=19% Similarity=0.232 Sum_probs=94.8
Q ss_pred hhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhh---hhCCchhhH
Q 024030 9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSD---QYGRKAMLT 85 (273)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~d---r~grr~~~~ 85 (273)
++..+....+..+..........|..+.-....+ .-+....+.......++..+++.+.+.+.+ |+||++.+.
T Consensus 241 ~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~----~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~ 316 (461)
T KOG3098|consen 241 KMLLLFPFFFYTGLETSFWISIYPTCISFTRKLG----SNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVL 316 (461)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccchhhhhhhhcc----CcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchh
Confidence 3444444444444444555555555543211111 112233344444556666777777777765 578899888
Q ss_pred HHHHHHHHHHHHHHhc-cCc--------------hhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHH
Q 024030 86 LPLTLSIIPLAILAYR-RSI--------------SFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILL 150 (273)
Q Consensus 86 ~~~~~~~~~~~~~~~~-~~~--------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 150 (273)
++..+..+..++.... +.. +.....++..++.|+ +.+...+..+.++.+.. +++|.++.++..
T Consensus 317 ~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~-~D~~~~t~~~~ii~~~~-~~~~~~~fsi~k 394 (461)
T KOG3098|consen 317 IGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGF-GDACFNTQRYVIIALLY-PDDRAQAFSLFK 394 (461)
T ss_pred HHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhh-HHHHHHHHHHHHHHHHh-cCchHHHHHHHH
Confidence 8888777766554432 111 124566777788898 77788888999999999 578889999998
Q ss_pred HHHHHHHHHHHHHHHHh
Q 024030 151 GVLSASFVCGTLAARFL 167 (273)
Q Consensus 151 ~~~~~g~~~gp~~~~~l 167 (273)
.-..++..++-+.....
T Consensus 395 fyq~~~s~v~~f~~~~~ 411 (461)
T KOG3098|consen 395 FYQSVASCVAFFFSPYL 411 (461)
T ss_pred HHHHHHHHHHhhhhhhh
Confidence 88888777665544433
No 257
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=97.33 E-value=0.00033 Score=59.55 Aligned_cols=116 Identities=10% Similarity=0.073 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhHHhhhhCCc-hhhHHHHHHHHHH-HHHHHhccCchhHHHHHHHHHHHhhhchhhHHHH
Q 024030 51 YLSGFQQAIIGLGTLVMMPVIGNLSDQYGRK-AMLTLPLTLSIIP-LAILAYRRSISFFYAYYALRTLTAMVCEGSINCL 128 (273)
Q Consensus 51 ~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 128 (273)
...|++.....++.++++...|.+.||.+.- .+.+.......++ ..+..........+.++..-.+.|.++.+.. |.
T Consensus 301 ~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~~-Pi 379 (480)
T KOG2563|consen 301 VFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGYL-PI 379 (480)
T ss_pred cccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhcCCC-Cc
Confidence 4568888888899999999999999998764 4444544444444 2222222222223555666666676444444 67
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024030 129 ALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL 167 (273)
Q Consensus 129 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l 167 (273)
..-+..|.+-|..-+...|+.+...++-+++-.++-+..
T Consensus 380 g~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~ 418 (480)
T KOG2563|consen 380 GFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGIL 418 (480)
T ss_pred ceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHH
Confidence 777777876555555667777666555555555555544
No 258
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=97.32 E-value=0.029 Score=48.57 Aligned_cols=140 Identities=14% Similarity=0.028 Sum_probs=93.7
Q ss_pred HHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHH---hccC
Q 024030 27 VVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILA---YRRS 103 (273)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~---~~~~ 103 (273)
....+-.|+... +.+....|..-+...+..+.+...+.++.+|+|..+.=.++......+..+.. +.+.
T Consensus 277 f~~lmt~yl~~~--------G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~ 348 (432)
T PF06963_consen 277 FGGLMTAYLKSQ--------GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPG 348 (432)
T ss_pred CcHHHHHHHHHC--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCC
Confidence 345666666443 77888899999999999999999999999999998887777665544433322 2222
Q ss_pred c----hhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 024030 104 I----SFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQA 175 (273)
Q Consensus 104 ~----~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l~~~~~~~~ 175 (273)
. .+...++.+-++.=+ |--.+--+..-++.|..|+++|+...|.-....++...+-..++-......-|..
T Consensus 349 ~~~~~~s~~~l~~gi~~SR~-GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~~~P~~F~~ 423 (432)
T PF06963_consen 349 SPFSSISAYLLLGGIALSRI-GLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIFPRPSQFGW 423 (432)
T ss_pred CCchhhHHHHHHHHHHHHHH-HHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhccCChHhcCh
Confidence 1 122333333333333 2122334667788999999999999999999999888777666554443333333
No 259
>PRK03612 spermidine synthase; Provisional
Probab=97.27 E-value=0.054 Score=48.31 Aligned_cols=119 Identities=13% Similarity=0.006 Sum_probs=59.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHH-HHHH-HHHHH-HHHHhccCchhH-HHHHHHHHHHhhhch
Q 024030 47 SLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL-PLTL-SIIPL-AILAYRRSISFF-YAYYALRTLTAMVCE 122 (273)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~-~~~~-~~~~~-~~~~~~~~~~~~-~~~~~~~~l~g~~~~ 122 (273)
+.+....+.+.+++..+..+|+.+++++.++.-++....- +..+ ..++. ++.......... ...+...++.++ ..
T Consensus 46 G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~-l~ 124 (521)
T PRK03612 46 GDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGL-LI 124 (521)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 5556677888889999999988888887644333322111 1111 11111 111111100001 112222333444 33
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024030 123 GSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL 167 (273)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l 167 (273)
|...|....+..+... ++-++..|-.+....+|.++|+++.+.+
T Consensus 125 G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~v 168 (521)
T PRK03612 125 GMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFL 168 (521)
T ss_pred HHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHH
Confidence 3333544444443222 2345667778888888888887776654
No 260
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=97.00 E-value=0.00046 Score=59.98 Aligned_cols=78 Identities=19% Similarity=0.256 Sum_probs=60.4
Q ss_pred HHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHH-HHHHHHH
Q 024030 17 VFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL-TLSIIPL 95 (273)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~-~~~~~~~ 95 (273)
.++.......+.|.++.|..+ +++++.+.|.+...-.+..+++.|++|.++||+.+||.++++. +....+.
T Consensus 20 ~~~~~~~~g~l~pll~vy~kQ--------LGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~ 91 (618)
T KOG3762|consen 20 YLFFGARFGSLFPLLAVYFKQ--------LGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTAT 91 (618)
T ss_pred eeeeeecccccchHHHHHHHH--------cCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 344455667788999999755 4889999999999999999999999999999999887776654 4455555
Q ss_pred HHHHhcc
Q 024030 96 AILAYRR 102 (273)
Q Consensus 96 ~~~~~~~ 102 (273)
+++.+.+
T Consensus 92 fll~fv~ 98 (618)
T KOG3762|consen 92 FLLVFVP 98 (618)
T ss_pred Hheeecc
Confidence 5555543
No 261
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=96.84 E-value=0.09 Score=44.98 Aligned_cols=108 Identities=14% Similarity=0.179 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHH--HHH---HHHHhccCchhHHHHHHHHHHHhhhchhhHH
Q 024030 52 LSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSI--IPL---AILAYRRSISFFYAYYALRTLTAMVCEGSIN 126 (273)
Q Consensus 52 ~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 126 (273)
+.-+....+.+|.++++--...+ |+ |++.+...+-.+ +.. ..+-+.++ .|.+++..+..|+ .+|..+
T Consensus 282 ~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fips---i~ivf~lif~eGL-lGGa~Y 353 (402)
T PF02487_consen 282 QYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPS---IWIVFVLIFYEGL-LGGASY 353 (402)
T ss_pred HHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHH-hhhHHH
Confidence 44555566677766665433221 33 444433332222 111 12234455 7888888888998 556666
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024030 127 CLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL 167 (273)
Q Consensus 127 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l 167 (273)
......+.|-.|+++|-.++|....+.++|..++.+++-.+
T Consensus 354 VNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 354 VNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 78888888889999999999999999999998888777655
No 262
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=96.73 E-value=0.016 Score=50.45 Aligned_cols=147 Identities=7% Similarity=0.050 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHH-hccCc------hhHHHHHHHHHHHhhh
Q 024030 48 LAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILA-YRRSI------SFFYAYYALRTLTAMV 120 (273)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~-~~~~~------~~~~~~~~~~~l~g~~ 120 (273)
.+....|.+..+..++.+++..+..++--+..-|+++....+..++..+.-. +.... ...+..+.--++..+
T Consensus 252 fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~- 330 (433)
T PF03092_consen 252 FSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEV- 330 (433)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHH-
Confidence 5667778877778888888888888877777888888777766655544322 11110 001222223334443
Q ss_pred chhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhh------------hHHHHHHHHHHHHHHHHHHH
Q 024030 121 CEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLS------------TTSAFQAATIVSMLAAAYMR 188 (273)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l~------------~~~~~~~~~~~~~~~~~~~~ 188 (273)
..+..+-+...+++|..|+..-|+..++..+..++|..++..++..+. -++...+..+..++...+ .
T Consensus 331 ~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~l-l 409 (433)
T PF03092_consen 331 IGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPL-L 409 (433)
T ss_pred HHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHH-H
Confidence 333444567778999999999999999999999999988888877761 123344444444444333 4
Q ss_pred HHhcCCCC
Q 024030 189 VFLKDDVP 196 (273)
Q Consensus 189 ~~~~~~~~ 196 (273)
..+|+.++
T Consensus 410 ~lLp~~~~ 417 (433)
T PF03092_consen 410 FLLPPQKR 417 (433)
T ss_pred HHcCCCch
Confidence 55666444
No 263
>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]
Probab=96.58 E-value=0.011 Score=49.05 Aligned_cols=97 Identities=14% Similarity=0.135 Sum_probs=73.0
Q ss_pred hHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHH
Q 024030 66 VMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASA 145 (273)
Q Consensus 66 ~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~ 145 (273)
+.-.+.=.+.|-...|++++.-.+.......++.+.++ .+.+=+.-+..|. ..+ ...+.++++-+..+++++.++
T Consensus 57 v~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~s---V~~mQvlE~FyG~-~tA-aEIAYysYIYs~Vd~~~Yqrv 131 (433)
T KOG3810|consen 57 VGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPS---VKAMQVLEFFYGP-ATA-AEIAYYSYIYSKVDPEMYKRV 131 (433)
T ss_pred HHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCC---chheeeehhhcCh-HHH-HHHhhhheeeeecCHHHHHHH
Confidence 33334445899999999998877766666677777777 6777677777776 333 336788899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 024030 146 FGILLGVLSASFVCGTLAARFL 167 (273)
Q Consensus 146 ~~~~~~~~~~g~~~gp~~~~~l 167 (273)
.|-.....-.|...|..++..+
T Consensus 132 t~y~RaA~L~g~~~g~vlaQlL 153 (433)
T KOG3810|consen 132 TGYCRAAFLVGKFVGSVLAQLL 153 (433)
T ss_pred HHHhHHHHHHHhHHHhHHHHHH
Confidence 9999888888877777776665
No 264
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=96.56 E-value=0.0077 Score=55.05 Aligned_cols=81 Identities=9% Similarity=0.064 Sum_probs=59.0
Q ss_pred hhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHH-HHHhHhhhhhHHhhhhCC--chhhH
Q 024030 9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGL-GTLVMMPVIGNLSDQYGR--KAMLT 85 (273)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~g~l~dr~gr--r~~~~ 85 (273)
.++...+..++.....+....++|.|+++. ++.+...+|++.+...+ +.+++.++.|+++||+++ |+.+.
T Consensus 331 ~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~-------~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~ 403 (633)
T TIGR00805 331 IYMLVILAQVIDSLAFNGYITFLPKYLENQ-------YGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAY 403 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------cCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHH
Confidence 445555666666777778888999999764 36667778888777665 567899999999999984 45666
Q ss_pred HHHHHHHHHHH
Q 024030 86 LPLTLSIIPLA 96 (273)
Q Consensus 86 ~~~~~~~~~~~ 96 (273)
.+.+...++.+
T Consensus 404 ~~~~~~~~~~~ 414 (633)
T TIGR00805 404 FAICLSTLSYL 414 (633)
T ss_pred HHHHHHHHHHH
Confidence 66666555543
No 265
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=95.78 E-value=0.22 Score=44.92 Aligned_cols=167 Identities=17% Similarity=0.143 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhh-CCchhhHHHHHH
Q 024030 12 HLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQY-GRKAMLTLPLTL 90 (273)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~ 90 (273)
.......+...+++.+..-+-.|+.+.+ +.....+.-....+.-......+.++.++|-| ||-+++.++.++
T Consensus 41 ~il~~e~~e~~a~~g~~~nlv~ylt~~~-------~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i 113 (571)
T KOG1237|consen 41 FILGNEVLERLAFFGLVSNLVTYLTLEL-------HASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLI 113 (571)
T ss_pred HHHHHHHHHHHhHhcchhHHHHHHHHHh-------ccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3344444555555555555566665532 12112223333444555667778899999975 788888888887
Q ss_pred HHHHHHHHHhcc----------------------CchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCC---h-hhHH-
Q 024030 91 SIIPLAILAYRR----------------------SISFFYAYYALRTLTAMVCEGSINCLALAYVADNIS---E-RQRA- 143 (273)
Q Consensus 91 ~~~~~~~~~~~~----------------------~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~---~-~~r~- 143 (273)
..++..+..... +......++...-+..+ +.|..-+...++-+|-++ + +.+.
T Consensus 114 ~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~-G~gg~r~~~~~fGadQfd~~~~~~~~~~ 192 (571)
T KOG1237|consen 114 SLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIAL-GAGGIRPCLLAFGADQFDELDPVEVKGI 192 (571)
T ss_pred HHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHhee-ccCCCCCcchhhcccccCccCcchhhCc
Confidence 777754443211 00012345555555555 445555888888888887 2 2223
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHHH
Q 024030 144 -SAFGILLGVLSASFVCGTLAARFL----STTSAFQAATIVSMLAAAY 186 (273)
Q Consensus 144 -~~~~~~~~~~~~g~~~gp~~~~~l----~~~~~~~~~~~~~~~~~~~ 186 (273)
..+.++....+.|..++-.+.-+. +|...|.+..+..+++.++
T Consensus 193 ~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~i 240 (571)
T KOG1237|consen 193 PSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILI 240 (571)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHH
Confidence 677788888888888886655444 7877777766655554443
No 266
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=95.53 E-value=0.053 Score=46.73 Aligned_cols=111 Identities=11% Similarity=-0.015 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHhHhhhhhHHhhhhCCc----hhhHHHHHHHHH-------HHHHHHhccCchhHHHHHHHHHHHhhhchh
Q 024030 55 FQQAIIGLGTLVMMPVIGNLSDQYGRK----AMLTLPLTLSII-------PLAILAYRRSISFFYAYYALRTLTAMVCEG 123 (273)
Q Consensus 55 ~~~~~~~~~~~~~~~~~g~l~dr~grr----~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 123 (273)
++..+...+..++..++|.++||+-|+ ....+.-+.... ...+...... .........++.|....-
T Consensus 287 ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~--~s~~~~~il~~~g~~~~~ 364 (493)
T KOG1330|consen 287 IFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTS--SSMIFGLILFLVGETISW 364 (493)
T ss_pred hhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHh
Confidence 334556777788888899999984321 112221111111 1111111222 122333344444542222
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHH-HHHHHHHHHHh
Q 024030 124 SINCLALAYVADNISERQRASAFGILLGVLSAS-FVCGTLAARFL 167 (273)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g-~~~gp~~~~~l 167 (273)
...+.......|..|+++|..+.++......+- ..-+|.+.|.+
T Consensus 365 ~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGil 409 (493)
T KOG1330|consen 365 FNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGIL 409 (493)
T ss_pred cccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhH
Confidence 333445557788999999999999987666554 44445466655
No 267
>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]
Probab=94.67 E-value=0.29 Score=40.18 Aligned_cols=132 Identities=12% Similarity=0.054 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHH
Q 024030 54 GFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYV 133 (273)
Q Consensus 54 g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~ 133 (273)
|.+.....+..++..+.+..+.||+---.-+.+...+.+.+..+.+++++ .++-+.+..+..+ +.|..- ...-..
T Consensus 65 g~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s---~~~sL~GV~~aSi-ssGlGE-iTFL~l 139 (409)
T KOG3880|consen 65 GAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNS---VPMSLLGVVFASI-SSGLGE-ITFLAL 139 (409)
T ss_pred chhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccc---hhHHHhhhhhhhh-cCCcce-eehhhh
Confidence 55566667777777888888899875443345556667777777778777 6666666666555 444332 222222
Q ss_pred HhcCChhhHHHHHHHHHHHHHHHHHHHHH----HHHHh--hhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 024030 134 ADNISERQRASAFGILLGVLSASFVCGTL----AARFL--STTSAFQAATIVSMLAAAYMRVFLKDD 194 (273)
Q Consensus 134 ~~~~~~~~r~~~~~~~~~~~~~g~~~gp~----~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (273)
+...++. ..+-++.+.+.++.+|.. +..+. ..+.+..+...+.++.....++.++++
T Consensus 140 ss~Y~~~----~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~~p 202 (409)
T KOG3880|consen 140 SSRYPSI----VIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLKSP 202 (409)
T ss_pred hccCCCc----eeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeCCC
Confidence 2333322 122233333333444422 22212 346677777777766655545555543
No 268
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=94.19 E-value=2.4 Score=37.48 Aligned_cols=98 Identities=16% Similarity=0.111 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHH--HHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHH
Q 024030 52 LSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL--TLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLA 129 (273)
Q Consensus 52 ~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 129 (273)
..|.+.++..+.+.+.++..|++-.++.+---+.++. ++.+...+++...++ .|..++..++.+. ...+..+..
T Consensus 299 yNG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~~t~~---Iw~~Y~~yvlf~~-~y~flitia 374 (511)
T TIGR00806 299 YNGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMSQSHD---IWVLYVTYVLFRG-IYQFLVPIA 374 (511)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhhcccc---hHHHHHHHHHHHH-HHHHHHHHH
Confidence 4577777778888889999999877774433333333 333334445556666 9999999999886 566666788
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHH
Q 024030 130 LAYVADNISERQRASAFGILLGVL 153 (273)
Q Consensus 130 ~~~~~~~~~~~~r~~~~~~~~~~~ 153 (273)
..-+++....+.-+..+|+..+..
T Consensus 375 ~~~iA~~L~~~~~aLvFGiNtfvA 398 (511)
T TIGR00806 375 TFQIASSLSKELCALVFGINTFVA 398 (511)
T ss_pred HHHHHHHhcccceEEEEecHHHHH
Confidence 888888887777787777765543
No 269
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=94.05 E-value=2.9 Score=36.58 Aligned_cols=112 Identities=12% Similarity=0.078 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHhHhhhhhHHhhhhCCc--hhhHHH--HHHHHHHHHHHHhcc------CchhHHHHHHHHHHHhhhc
Q 024030 52 LSGFQQAIIGLGTLVMMPVIGNLSDQYGRK--AMLTLP--LTLSIIPLAILAYRR------SISFFYAYYALRTLTAMVC 121 (273)
Q Consensus 52 ~~g~~~~~~~~~~~~~~~~~g~l~dr~grr--~~~~~~--~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~g~~~ 121 (273)
..-.....+.++-++|..+..+. ..-++| ++++.+ -++++-..+++..-+ --..-+..++..++.|+ .
T Consensus 308 ~~~i~~~~fNvgD~vGR~~~~~~-~~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gl-t 385 (437)
T TIGR00939 308 YPIICFLLFNLFDWLGRSLTSKF-MWPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGF-S 385 (437)
T ss_pred HHHHHHHHHHHHHHHHhhhhhee-EeeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHH-h
Confidence 33455667788888888755432 111223 332221 122222222222211 00124666677888888 7
Q ss_pred hhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024030 122 EGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAAR 165 (273)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~ 165 (273)
.|...+....+..+..++++|-.+..+...+..+|..+|..++-
T Consensus 386 nGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~ 429 (437)
T TIGR00939 386 NGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSF 429 (437)
T ss_pred hhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777888888899999999988888888888888877766543
No 270
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=93.73 E-value=1.7 Score=35.21 Aligned_cols=132 Identities=16% Similarity=0.099 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHhHhhhhhHHhhhhCCc--hhhHHHHHHHHHHHHHHH----hccCchhHHHHHHHHHHHhhhchhhHHH
Q 024030 54 GFQQAIIGLGTLVMMPVIGNLSDQYGRK--AMLTLPLTLSIIPLAILA----YRRSISFFYAYYALRTLTAMVCEGSINC 127 (273)
Q Consensus 54 g~~~~~~~~~~~~~~~~~g~l~dr~grr--~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 127 (273)
|.+.+.+.++.++++-+..++..|-..| ..+.+..+..++...+.. .+++..+...-+++..+.-. +.|.++|
T Consensus 285 GfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~-cvGlfwP 363 (454)
T KOG4332|consen 285 GFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEA-CVGLFWP 363 (454)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHH-HHhhcch
Confidence 7888888999999999998888887766 334444444444333322 22332222222333333333 5567888
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHH----HHHhhhHHHHHHHHHHHHHHHHH
Q 024030 128 LALAYVADNISERQRASAFGILLGVLSASFVCGTLA----ARFLSTTSAFQAATIVSMLAAAY 186 (273)
Q Consensus 128 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~----~~~l~~~~~~~~~~~~~~~~~~~ 186 (273)
...-+-.+..|++.|+..+.++..--++-..++-.. +--.+-|..|-++.++..++.+.
T Consensus 364 SimkmRsqyIPEearstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~~~~~a~i~ 426 (454)
T KOG4332|consen 364 SIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAFLFVASIL 426 (454)
T ss_pred HHHHHHHhhCCHHHHhhhhhheechhhHhhhhhheecccccCccccchhhhhhHHHHHHHHHH
Confidence 888888999999999988887765444433322111 00114466777777666555444
No 271
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=93.10 E-value=0.43 Score=41.94 Aligned_cols=136 Identities=11% Similarity=0.148 Sum_probs=81.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhHhhhhhHHh-hhhCCchhhHHHHHHHHHHHHHHHh----ccC------------------
Q 024030 47 SLAIYLSGFQQAIIGLGTLVMMPVIGNLS-DQYGRKAMLTLPLTLSIIPLAILAY----RRS------------------ 103 (273)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~~~~~~~g~l~-dr~grr~~~~~~~~~~~~~~~~~~~----~~~------------------ 103 (273)
..+....|...++..+.........+... -++.+|+.+..+++.......+... ...
T Consensus 298 ~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~r~~~~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~ 377 (488)
T KOG2325|consen 298 SEAVLYNGITLSISGILSVILLLLYIFTRLGKIDKRRIILLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYS 377 (488)
T ss_pred chHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhccceeeeehHHHHHHhhheeeeeccccccccccccccccCcCcccch
Confidence 34455667766666666666555555544 3445566666664444443332221 100
Q ss_pred ------chhHHHHHHH-HHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHH
Q 024030 104 ------ISFFYAYYAL-RTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----STTSA 172 (273)
Q Consensus 104 ------~~~~~~~~~~-~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l----~~~~~ 172 (273)
..+.+.++.. -++.|. +.-.......+.-+|...|++++...+.+......+..+||++.... |.++.
T Consensus 378 wc~~~~~v~~~~~l~~~i~~~g~-~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v 456 (488)
T KOG2325|consen 378 WCDTTTAVPLILYLISFIVVFGI-AFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPV 456 (488)
T ss_pred hhccCcccChhhheeehhheecc-ccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHH
Confidence 0012333333 233454 33344456788889999999999999999999999999998887655 55665
Q ss_pred HHHHHHHHHHH
Q 024030 173 FQAATIVSMLA 183 (273)
Q Consensus 173 ~~~~~~~~~~~ 183 (273)
..+..+..++.
T Consensus 457 ~~~~~~~~l~~ 467 (488)
T KOG2325|consen 457 WIILLCLLLVV 467 (488)
T ss_pred HHHHHHHHHHH
Confidence 55555544443
No 272
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=92.97 E-value=0.028 Score=50.29 Aligned_cols=151 Identities=11% Similarity=0.156 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHH-HHHhHhhhhhHHhhhhC--CchhhH
Q 024030 9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGL-GTLVMMPVIGNLSDQYG--RKAMLT 85 (273)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~g~l~dr~g--rr~~~~ 85 (273)
.+....+.............+++|.|++. +++.++..++++..+..+ +..++.+++|.+..|+. .|+...
T Consensus 306 ~f~~~~la~~~~~~~~~G~~tF~pKylE~-------QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~ 378 (539)
T PF03137_consen 306 VFMCLILAGVFESFIVSGFATFLPKYLES-------QFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAK 378 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHH
Confidence 34444555566666777788899999955 456666677766655444 56788889999999875 344444
Q ss_pred HHHHHHHHHHHH---HHh--cc----------C------------------------------------chhHHHHHHHH
Q 024030 86 LPLTLSIIPLAI---LAY--RR----------S------------------------------------ISFFYAYYALR 114 (273)
Q Consensus 86 ~~~~~~~~~~~~---~~~--~~----------~------------------------------------~~~~~~~~~~~ 114 (273)
...+...++.+. ..+ .+ . ...+..+++..
T Consensus 379 ~~~v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~ 458 (539)
T PF03137_consen 379 FCIVVSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILL 458 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHH
Confidence 444333333222 100 00 0 00122333333
Q ss_pred HHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHH-HHHHHHHHHHHHHh
Q 024030 115 TLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVL-SASFVCGTLAARFL 167 (273)
Q Consensus 115 ~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~~g~~~gp~~~~~l 167 (273)
++..+ ..+.........+-+.+|+++|+.+.|+..... -+|.+=||++-|.+
T Consensus 459 ~~~~~-~~~~~~~p~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~i 511 (539)
T PF03137_consen 459 FILSF-FTFMSQVPSTLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAI 511 (539)
T ss_dssp ------------------------------------------------------
T ss_pred HHHHH-HHHhcccchheeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHH
Confidence 33222 223333445555667888999999999986654 45777888887766
No 273
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=92.73 E-value=2.3 Score=36.64 Aligned_cols=97 Identities=21% Similarity=0.166 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHH--HHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHH
Q 024030 51 YLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLT--LSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCL 128 (273)
Q Consensus 51 ~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 128 (273)
...|.+.++..+.+.++++..|.+..++++-.-+.++.. +.+...+++...++ .|..++..++.+. ......+.
T Consensus 285 vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~---Iwv~Y~~yIif~~-~y~fliTi 360 (412)
T PF01770_consen 285 VYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTGN---IWVCYAGYIIFRS-LYMFLITI 360 (412)
T ss_pred ccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHH-HHHHHHHH
Confidence 345778888888888999999999777777554444433 33344455566666 8999998888875 44455566
Q ss_pred HHHHHHhcCChhhHHHHHHHHHH
Q 024030 129 ALAYVADNISERQRASAFGILLG 151 (273)
Q Consensus 129 ~~~~~~~~~~~~~r~~~~~~~~~ 151 (273)
...-++....+|.-+..+|+..+
T Consensus 361 A~~qIA~~l~~e~yaLVFGiNtf 383 (412)
T PF01770_consen 361 ASFQIAKNLSEERYALVFGINTF 383 (412)
T ss_pred HHHHHHHhccccceeeeeeeHHH
Confidence 66667776666666666655544
No 274
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=91.17 E-value=2.8 Score=35.99 Aligned_cols=129 Identities=11% Similarity=0.128 Sum_probs=75.7
Q ss_pred HhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHH-HHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHH----
Q 024030 25 MMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAI-IGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILA---- 99 (273)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~---- 99 (273)
.......|.+..+. +.+...+....-+.... +.+.-.+|.+...++-++- ||...+. .+.-.+..-++.
T Consensus 260 ~VTLsiFPg~~~~~----~~~~~~~~~y~~~~~~l~fN~~d~vG~~~a~~~~~~~-~r~l~i~-v~lR~lfiPlF~~cn~ 333 (406)
T KOG1479|consen 260 FVTLSIFPGFCSEV----KSSGLLGDWYALLLVFLSFNVFDLIGSILAALLTWPD-PRKLTIP-VLLRLLFIPLFLLCNY 333 (406)
T ss_pred eeeeEecchhhccc----ccCcccchhhHHHHHHHHhHHHHHhhhhhhhcccCCC-CceehHH-HHHHHHHHHHHHHhcc
Confidence 33445677776653 21212234455555566 7888888866666654444 3333332 222222222222
Q ss_pred -----hccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 024030 100 -----YRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLA 163 (273)
Q Consensus 100 -----~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~ 163 (273)
...+ -++.+....+.|+ ..|-..+....+.++..+++++-.+..+.......|...|..+
T Consensus 334 ~~~~v~~~~---~~~~~~l~~~lgl-snGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~ 398 (406)
T KOG1479|consen 334 PPLPVVFES---DGWFIFLMSLLGL-SNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLL 398 (406)
T ss_pred CCCCceecC---chHHHHHHHHHHh-ccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 1233 4667777888888 7787778888888999988888776666666666666655444
No 275
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=91.11 E-value=3.8 Score=28.45 Aligned_cols=39 Identities=31% Similarity=0.347 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHH
Q 024030 52 LSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTL 90 (273)
Q Consensus 52 ~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~ 90 (273)
..|.......++..++..+.|.+.|..|.+..+......
T Consensus 88 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (141)
T TIGR00880 88 ALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAIL 126 (141)
T ss_pred HHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHH
Confidence 345555666777777777777777777766655544433
No 276
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=89.47 E-value=3.9 Score=35.69 Aligned_cols=112 Identities=9% Similarity=0.043 Sum_probs=65.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhc--CCCCcc--------hhHHHHHHHHHHHHHHHHHHhHhhhhhHH
Q 024030 5 KEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMAL--CPGLDE--------CSLAIYLSGFQQAIIGLGTLVMMPVIGNL 74 (273)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--------~~~~~~~~g~~~~~~~~~~~~~~~~~g~l 74 (273)
+.+|.++.+++..++..++.....-+...+.-+.+ ++++.+ ++.....-.+=..++.+...+.+....++
T Consensus 276 ~mpr~m~~L~i~~lltW~a~f~f~LF~TDfmG~~vy~GDp~a~~~S~a~~~Y~~GV~~G~~GL~ins~~lgi~S~~~~~l 355 (498)
T KOG0637|consen 276 VMPRPMRMLLIVTLLTWIAWFPFLLFDTDFMGREVYGGDPKADENSEAKKLYNAGVRMGCLGLMLNSIVLGIYSLLVEKL 355 (498)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHHHHHHhcchHhhCCCCCCCcchhHHHHHHhccccchHHHHHHHHHHHHHHHHHHHH
Confidence 34566666777777776665544444444433311 111111 11111122333466777888889999999
Q ss_pred hhhhCCchhhHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhh
Q 024030 75 SDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAM 119 (273)
Q Consensus 75 ~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 119 (273)
.||+|-|+.+..+...+.++..+.+..++ .+.....+-..|+
T Consensus 356 ~~~~g~r~~y~~~~~~f~~~~~~~gl~~~---~~~~~~~~~~~G~ 397 (498)
T KOG0637|consen 356 SRKFGTRKRYWGGVNAFGLATGLAGLVLN---TYVVLSHRSTAGI 397 (498)
T ss_pred HHhcCcceEEeehhHHHHHHHHHHhhhhh---HHHHHHHHhhcce
Confidence 99999766666666656666666665555 5666666666664
No 277
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=88.49 E-value=16 Score=31.98 Aligned_cols=101 Identities=9% Similarity=0.002 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHH-HHh----ccCchhHHHHHHHHHHHhhhchhhHHHH
Q 024030 54 GFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAI-LAY----RRSISFFYAYYALRTLTAMVCEGSINCL 128 (273)
Q Consensus 54 g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 128 (273)
.+......+..++..+..-.+..|+..|.=+..+++...+..+. ..+ .+....++..++.-++.|+ +.+.....
T Consensus 48 ~~~~~~~~v~~l~~~~~~~~~~~~i~~~~Ri~~~lv~~~~~~~~~~~l~~~~~~~~~~f~~~~~~v~~~g~-~~~~~q~s 126 (437)
T TIGR00939 48 TYYTLASQLPSLLFNSLNLFLIFRIPVTVRLLGGLVILLVVVILVMVLVKVQTSETGFFVTTMASVVIINS-GMALLQGS 126 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCccchhHHHHHHHHHHHHHHhheeeecCCcchHHHHHHHHHHHHHh-hhhhhccc
Confidence 34444555666666666666667766543334443322222211 111 1121235566666677776 55666555
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHHHHHHHHH
Q 024030 129 ALAYVADNISERQRASAFGILLGVLSASFVCG 160 (273)
Q Consensus 129 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g 160 (273)
..++.+ .+|++. ++....+.+++++++
T Consensus 127 ~~gla~-~fp~~~----~~a~~~G~g~aGv~~ 153 (437)
T TIGR00939 127 LFGLAG-VFPSTY----SSAVMSGQGLAGVLT 153 (437)
T ss_pred chhhcc-cCCHHH----HHHHHhcchhHHHHH
Confidence 555555 456443 333444444444444
No 278
>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]
Probab=87.00 E-value=4.5 Score=33.55 Aligned_cols=66 Identities=15% Similarity=0.111 Sum_probs=48.7
Q ss_pred HHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024030 96 AILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAAR 165 (273)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~ 165 (273)
.++.+.++ .|..++.-+..|+.+ |..+....--+.+-.++++|--+++......++|..++.+++-
T Consensus 334 a~~~ftps---i~ivf~lI~~EGLlG-GasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lal 399 (409)
T KOG3880|consen 334 AWYWFTPS---IWIVFALILFEGLLG-GASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLAL 399 (409)
T ss_pred HHHHhccH---HHHHHHHHHHHhhcC-chHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhc
Confidence 34556666 888888888899844 4444566666666677799999999998888888887766653
No 279
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=82.88 E-value=3.2 Score=38.49 Aligned_cols=81 Identities=10% Similarity=0.160 Sum_probs=51.7
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHH-HHHhHhhhhhHHhhhhC--Cchhh
Q 024030 8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGL-GTLVMMPVIGNLSDQYG--RKAML 84 (273)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~g~l~dr~g--rr~~~ 84 (273)
+.+....++..+..........++|.|++.+. +.+.+.+..+.+...+ +..++..++|.+..|+. .|...
T Consensus 392 ~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qf-------g~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a 464 (735)
T KOG3626|consen 392 PIFMLVVLASVIESLAITGYITFLPKYLETQF-------GISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAA 464 (735)
T ss_pred chHHHHHHHHHHHHHHHhhHHHhhHHHHHHHc-------CCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHH
Confidence 34555566777777778888899999997754 5555555555543333 34566677899999874 44454
Q ss_pred HHHHHHHHHHH
Q 024030 85 TLPLTLSIIPL 95 (273)
Q Consensus 85 ~~~~~~~~~~~ 95 (273)
.+..+...+..
T Consensus 465 ~~~~~~~~l~l 475 (735)
T KOG3626|consen 465 KFVIVCSVLSL 475 (735)
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 280
>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]
Probab=81.28 E-value=22 Score=30.25 Aligned_cols=97 Identities=23% Similarity=0.169 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHH--HHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHH
Q 024030 52 LSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL--TLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLA 129 (273)
Q Consensus 52 ~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 129 (273)
..|..-++..+.+.++.+..|.+.-++.|..-++++. +..+...+++...++ .|+.++..++... ......+..
T Consensus 272 yNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t~~---Iw~~Ya~yvlfr~-~y~l~itiA 347 (433)
T KOG3810|consen 272 YNGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQTQH---IWVCYAGYVLFRV-IYQLTITIA 347 (433)
T ss_pred hcCHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhcccc---eehhhhhHHHHHh-hHhhhhhHH
Confidence 4467777778888899999999988888775444433 333333444445555 8888888888765 445555677
Q ss_pred HHHHHhcCChhhHHHHHHHHHHH
Q 024030 130 LAYVADNISERQRASAFGILLGV 152 (273)
Q Consensus 130 ~~~~~~~~~~~~r~~~~~~~~~~ 152 (273)
..-+++..+.|.-|..+|+..+.
T Consensus 348 ~~~iA~nL~~e~~gLvFGiNTFv 370 (433)
T KOG3810|consen 348 TFQIARNLSSELFGLVFGINTFV 370 (433)
T ss_pred HHHHHHhhhhhhheeeeehHHHH
Confidence 77777777777777777765543
No 281
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.16 E-value=14 Score=25.06 Aligned_cols=27 Identities=19% Similarity=0.246 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHhHhhhhhHHhhhh
Q 024030 52 LSGFQQAIIGLGTLVMMPVIGNLSDQY 78 (273)
Q Consensus 52 ~~g~~~~~~~~~~~~~~~~~g~l~dr~ 78 (273)
..++-.+.-+++..+.....|++.|||
T Consensus 43 ~~a~klssefIsGilVGa~iG~llD~~ 69 (116)
T COG5336 43 AQAFKLSSEFISGILVGAGIGWLLDKF 69 (116)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334555666777788888889999987
No 282
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=79.68 E-value=40 Score=29.19 Aligned_cols=49 Identities=8% Similarity=-0.113 Sum_probs=26.3
Q ss_pred HhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhh
Q 024030 25 MMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQY 78 (273)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~ 78 (273)
.+..+.-+.|.++.-+.+. +............+..++....-.++.-|.
T Consensus 35 N~fiTa~~y~~~~~~~~~~-----~~~F~~~~~~~a~i~~ll~~~~n~~~~~~~ 83 (406)
T KOG1479|consen 35 NMFITASDYYYYRFPGYHN-----SKNFTSSYTLAAQIPLLLFNLLNAFLNTRL 83 (406)
T ss_pred HhhhccHHHHHhhcCCCch-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555544322221 334444455555666677777777777773
No 283
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=78.89 E-value=0.82 Score=37.94 Aligned_cols=109 Identities=16% Similarity=0.120 Sum_probs=3.4
Q ss_pred HHHHHHHHHHHhHhhhhhHHhhh-hCCchhhHHH--HHHHHHHHHHHHhccC-------chhHHHHHHHHHHHhhhchhh
Q 024030 55 FQQAIIGLGTLVMMPVIGNLSDQ-YGRKAMLTLP--LTLSIIPLAILAYRRS-------ISFFYAYYALRTLTAMVCEGS 124 (273)
Q Consensus 55 ~~~~~~~~~~~~~~~~~g~l~dr-~grr~~~~~~--~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~g~~~~~~ 124 (273)
.....+.++-.+|....++..=+ ..+|++...+ -+.++-..+++-..+. ..+-+..++..++.|+ ..|-
T Consensus 186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~-TNGy 264 (309)
T PF01733_consen 186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGF-TNGY 264 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHH-ccch
Confidence 34567888888888877653211 1344444321 2222222222211111 0113556677778887 7777
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 024030 125 INCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAA 164 (273)
Q Consensus 125 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~ 164 (273)
..+....+.++..++++|..+..+......+|-.+|..++
T Consensus 265 l~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls 304 (309)
T PF01733_consen 265 LSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLS 304 (309)
T ss_dssp --HHHH----------------------------------
T ss_pred hhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888889999999998888888888777777776554
No 284
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=77.14 E-value=7.9 Score=31.16 Aligned_cols=46 Identities=2% Similarity=-0.107 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHHHHHHHHH--HHHHH-----Hh--hhHHHHHHHHHHHHHHHHH
Q 024030 141 QRASAFGILLGVLSASFVCG--TLAAR-----FL--STTSAFQAATIVSMLAAAY 186 (273)
Q Consensus 141 ~r~~~~~~~~~~~~~g~~~g--p~~~~-----~l--~~~~~~~~~~~~~~~~~~~ 186 (273)
+|+....+...+.++|.++. |++.+ .+ +|+..+.+.+++.++-+++
T Consensus 3 ~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIl 57 (267)
T PF07672_consen 3 KKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLIL 57 (267)
T ss_pred ccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555556667776555 44433 11 7888877777666655555
No 285
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=76.40 E-value=39 Score=27.24 Aligned_cols=10 Identities=20% Similarity=0.265 Sum_probs=4.1
Q ss_pred HHHHHHHhcc
Q 024030 251 AAVVAFFSGL 260 (273)
Q Consensus 251 ~~~~~~~~~~ 260 (273)
.+++..+++.
T Consensus 188 Av~aGvlyGs 197 (254)
T PF07857_consen 188 AVFAGVLYGS 197 (254)
T ss_pred HHHHHHHHhc
Confidence 3344444433
No 286
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=69.37 E-value=42 Score=28.48 Aligned_cols=89 Identities=13% Similarity=0.147 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHH
Q 024030 11 SHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTL 90 (273)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~ 90 (273)
..++++..+..+|.+..-|.++.+..|+..+++++ ... ....+......+|..++..+.+++.|++|....+.++.+.
T Consensus 34 ~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~-~~~-~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~ 111 (372)
T PF00854_consen 34 GLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDS-RRD-SFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIG 111 (372)
T ss_dssp CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTT-HHH-HHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccccHHHHHHHHhcccchh-hhh-hhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHH
Confidence 44566667778889999999999999977655322 222 2335666677899999999999999999999888888888
Q ss_pred HHHHHHHHHhc
Q 024030 91 SIIPLAILAYR 101 (273)
Q Consensus 91 ~~~~~~~~~~~ 101 (273)
..++.+.+...
T Consensus 112 ~~~~~~~f~~~ 122 (372)
T PF00854_consen 112 MLLALIVFLSG 122 (372)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHhC
Confidence 88777766543
No 287
>KOG3097 consensus Predicted membrane protein [Function unknown]
Probab=68.08 E-value=49 Score=27.98 Aligned_cols=68 Identities=13% Similarity=0.044 Sum_probs=42.3
Q ss_pred HhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcC
Q 024030 65 LVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNI 137 (273)
Q Consensus 65 ~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~ 137 (273)
...+.+.+.+.+++|-|+++.++........... +-+. +..++......|+ +.+..+..--+++++..
T Consensus 72 ~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA~N-l~pr---~~tlVPa~~~~G~-aa~p~W~SkgtYlT~~g 139 (390)
T KOG3097|consen 72 IDSSMFMPLLIRFLGTKWTMVLAVFPYALYIAAN-LEPR---YETLVPAGLVLGM-AAGPIWASKGTYLTPMG 139 (390)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhh-cchh---HHhhccHHHhhcc-ccccccccCcceecHHH
Confidence 4444455588999999999887776655432221 1122 5667777788887 55655555555555544
No 288
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=58.96 E-value=39 Score=24.81 Aligned_cols=48 Identities=6% Similarity=-0.008 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHH
Q 024030 108 YAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVC 159 (273)
Q Consensus 108 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~ 159 (273)
..++....++|. |.. ...+..++.--++++.|...|+-.+-.+++-+.
T Consensus 98 ~~~~~S~~~Fg~---gll-GisYGilSaSWD~~r~GSllG~~e~~~N~~r~~ 145 (153)
T PF11947_consen 98 AVLLVSLVFFGL---GLL-GISYGILSASWDPEREGSLLGWEEFKRNWGRMW 145 (153)
T ss_pred HHHHHHHHHHHH---HHH-hhhhhhcccccCCCCCCCcccHHHHHHhHHHHH
Confidence 344444444444 333 567777777777788899999988887776543
No 289
>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]
Probab=56.64 E-value=1.3e+02 Score=26.08 Aligned_cols=74 Identities=18% Similarity=0.225 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHH
Q 024030 10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLT 89 (273)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~ 89 (273)
...+..+.+....+.-+.......|..+.. +.+....+.-..+-+...++..++.|...|+..|+|++.....
T Consensus 29 ~i~Ly~gy~lt~wgdR~W~F~VsL~M~~L~-------gnsl~lvAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~L~ 101 (503)
T KOG2601|consen 29 VIFLYLGYFLTTWGDRMWEFSVSLFMILLG-------GNSLLLVAVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTWLL 101 (503)
T ss_pred eehhhHHHHHhHhhHhHHHHHHHHHHHHHc-------CceehhHHHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHHHh
Confidence 344556666666666666666666665431 1112233333344456678888999999999999998876544
Q ss_pred H
Q 024030 90 L 90 (273)
Q Consensus 90 ~ 90 (273)
+
T Consensus 102 l 102 (503)
T KOG2601|consen 102 L 102 (503)
T ss_pred h
Confidence 3
No 290
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=56.61 E-value=1.1e+02 Score=25.02 Aligned_cols=11 Identities=9% Similarity=0.138 Sum_probs=4.1
Q ss_pred HHHHHHHHHHh
Q 024030 108 YAYYALRTLTA 118 (273)
Q Consensus 108 ~~~~~~~~l~g 118 (273)
|.+.+..++.+
T Consensus 24 ~l~~~~~~~~~ 34 (284)
T PF12805_consen 24 WLLILVLALLT 34 (284)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 291
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=53.68 E-value=1.4e+02 Score=25.43 Aligned_cols=157 Identities=14% Similarity=0.123 Sum_probs=81.0
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHhHHHHHH-hhcCCCCcchhHHHHHHHHHH-HHHHHHHHhHhhhhhHHhhhhC--Cch
Q 024030 7 IKTLSHLFVTVFLWGFATMMVVPAITDVTM-MALCPGLDECSLAIYLSGFQQ-AIIGLGTLVMMPVIGNLSDQYG--RKA 82 (273)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~g~l~dr~g--rr~ 82 (273)
.+.+..++++.++..++........-.++. |+...+.++-.++... +... ..+.+..+..+.++-.++|+.| ++.
T Consensus 118 ~~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF-~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~va 196 (354)
T PF05631_consen 118 SSNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTF-SLATFFGNGVVAIGAGVVANVLADWFGFGPVA 196 (354)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHH-HHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcc
Confidence 345677777888888888777765554443 2221121211222221 2111 2345556666667777788765 467
Q ss_pred hhHHHHHHHHHHHHHHHhccCc--------hh----H---HHHHHH--H-HHHhhhchhhHHHHHHHHHHhcCCh---hh
Q 024030 83 MLTLPLTLSIIPLAILAYRRSI--------SF----F---YAYYAL--R-TLTAMVCEGSINCLALAYVADNISE---RQ 141 (273)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~--------~~----~---~~~~~~--~-~l~g~~~~~~~~~~~~~~~~~~~~~---~~ 141 (273)
++..+..+.+++..+.....++ .+ . +..+.. | .+.|+ ....+-...+..+-.|.|. +.
T Consensus 197 PF~~a~~~l~~~~~~I~~~W~ENyg~~~~~~~~~~~~~~a~~~i~~d~ril~LG~-~qslFE~smy~FVflWtPaL~~~~ 275 (354)
T PF05631_consen 197 PFDAAIVLLAVAAVLILKTWPENYGDTSSSSSLSGSFREAWRAILSDPRILLLGL-IQSLFEGSMYLFVFLWTPALDPDD 275 (354)
T ss_pred hHHHHHHHHHHHHHHHHhcccccCCCcccccchHHHHHHHHHHHHcCchhHHHHH-HHHHHHHHHHHheeeeeceecCCC
Confidence 7777777777665554421110 00 0 001110 1 12344 4455556777777777663 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024030 142 RASAFGILLGVLSASFVCGTLAAR 165 (273)
Q Consensus 142 r~~~~~~~~~~~~~g~~~gp~~~~ 165 (273)
+..=.|+......+..++|..+-.
T Consensus 276 ~~~P~GlIFssFM~a~MlGS~lf~ 299 (354)
T PF05631_consen 276 EELPLGLIFSSFMVAMMLGSSLFS 299 (354)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHH
Confidence 333456666655666666655543
No 292
>PF11299 DUF3100: Protein of unknown function (DUF3100); InterPro: IPR021450 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=51.38 E-value=43 Score=26.42 Aligned_cols=51 Identities=14% Similarity=0.092 Sum_probs=32.8
Q ss_pred HHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024030 114 RTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF 166 (273)
Q Consensus 114 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~ 166 (273)
..-.|. +++..+++...-+.+.+| +...+..++....+-+....|-.+.-+
T Consensus 178 AMasGv-GSgSMMaAa~~aL~~~~P-~~a~~i~A~AaaSNllt~~~G~Y~~if 228 (241)
T PF11299_consen 178 AMASGV-GSGSMMAAASGALAAAYP-EMADQILAFAAASNLLTSVTGLYMSIF 228 (241)
T ss_pred HHHcCC-cHHHHHHHHHHHHHHHCc-chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334576 556666777888888887 566677777776666666666444433
No 293
>COG1268 BioY Uncharacterized conserved protein [General function prediction only]
Probab=48.01 E-value=81 Score=24.01 Aligned_cols=20 Identities=20% Similarity=0.388 Sum_probs=14.7
Q ss_pred HHHHHhHhhhhhHHhhhhCC
Q 024030 61 GLGTLVMMPVIGNLSDQYGR 80 (273)
Q Consensus 61 ~~~~~~~~~~~g~l~dr~gr 80 (273)
.++..+...+.|+++||..+
T Consensus 92 L~gfi~aa~l~G~l~~k~~~ 111 (184)
T COG1268 92 LIGFIIAAFLIGLLAEKIRK 111 (184)
T ss_pred HHHHHHHHHHHHHHHHhhhc
Confidence 56667777778888888775
No 294
>PRK03612 spermidine synthase; Provisional
Probab=43.71 E-value=2.5e+02 Score=25.42 Aligned_cols=32 Identities=13% Similarity=0.240 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhHHhhhhCCch
Q 024030 51 YLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKA 82 (273)
Q Consensus 51 ~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~ 82 (273)
...+..+...++++.++..+.....+++...-
T Consensus 54 ~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e 85 (521)
T PRK03612 54 TVIGLMLFAMGVGALLSKYLLRDAAAGFVAVE 85 (521)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 34566666667777777666566666665543
No 295
>KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=43.42 E-value=42 Score=27.38 Aligned_cols=63 Identities=14% Similarity=0.057 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHH---------hhhhCCchhh
Q 024030 14 FVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNL---------SDQYGRKAML 84 (273)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l---------~dr~grr~~~ 84 (273)
-.+-+.+-+......+++-.|+++. +.++.....++.+..+.-.+..++.|.. .||+|||+..
T Consensus 23 GvGHmlNDitAScWFTYlllfltqi--------glsp~~~AmlML~GQVtda~st~ftGi~~d~nll~~~idr~G~~~~w 94 (412)
T KOG4830|consen 23 GVGHMLNDITASCWFTYLLLFLTQI--------GLSPSSRAMLMLIGQVTDAISTPFTGIFSDSNLLPACIDRIGRRMSW 94 (412)
T ss_pred chhHHHhhHHHHHHHHHHHHHHHHh--------cCCcchhHHHHHhhHHHHHHhcccccccccccccHHHhhhhcceeee
Confidence 3455566666777778888887664 3333333455666677777777777644 5699999754
No 296
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=42.80 E-value=2.8e+02 Score=26.29 Aligned_cols=47 Identities=15% Similarity=0.046 Sum_probs=23.3
Q ss_pred hhHHhhhh----CCchhhHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhh
Q 024030 71 IGNLSDQY----GRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAM 119 (273)
Q Consensus 71 ~g~l~dr~----grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 119 (273)
.+.++|.= ||.+-+.+..+++.++.+...+.... .|++....++.++
T Consensus 43 a~al~D~d~~~~~R~~~l~~t~~~f~i~sl~v~ll~~~--p~lf~~~l~~~tf 93 (704)
T TIGR01666 43 AAALVDLDDRLTGRLKNVIFTLICFSIASFSVELLFGK--PWLFAVGLTVSTF 93 (704)
T ss_pred hhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHH
Confidence 45567743 44455556666666555544433331 4444444444443
No 297
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=41.39 E-value=1.4e+02 Score=24.29 Aligned_cols=63 Identities=17% Similarity=0.288 Sum_probs=30.6
Q ss_pred HHHHHHHHHhHhhhhhHHhhh-hCCchhhH----HHHHHHHHHHHHH-HhccCc-hhHHHHHHHHHHHhh
Q 024030 57 QAIIGLGTLVMMPVIGNLSDQ-YGRKAMLT----LPLTLSIIPLAIL-AYRRSI-SFFYAYYALRTLTAM 119 (273)
Q Consensus 57 ~~~~~~~~~~~~~~~g~l~dr-~grr~~~~----~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~l~g~ 119 (273)
.-++..+.+++....|.+... +.||+-+. .+.+..+++.+.. ....+. .....+++.-++.|+
T Consensus 147 ~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~ 216 (267)
T PF07672_consen 147 QILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGF 216 (267)
T ss_pred HHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHH
Confidence 334455556676777877764 34444332 2233333333332 122221 124556666667666
No 298
>PRK02237 hypothetical protein; Provisional
Probab=40.15 E-value=78 Score=21.66 Aligned_cols=46 Identities=11% Similarity=-0.042 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHH
Q 024030 53 SGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAIL 98 (273)
Q Consensus 53 ~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~ 98 (273)
.|-+...+.-..++.++.+++..|+..+-+-=.+|..+..++..+.
T Consensus 58 ~GRvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI 103 (109)
T PRK02237 58 FGRVYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVI 103 (109)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHh
Confidence 4677777788888999999999999877665566666665555444
No 299
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=38.52 E-value=2.1e+02 Score=23.29 Aligned_cols=16 Identities=19% Similarity=0.243 Sum_probs=9.4
Q ss_pred cchhHHHHHHHHHhcc
Q 024030 245 SVTLSQAAVVAFFSGL 260 (273)
Q Consensus 245 ~~~~~~~~~~~~~~~~ 260 (273)
+|-++......|+.-+
T Consensus 206 spifikaFsltF~aEw 221 (294)
T KOG2881|consen 206 SPIFIKAFSLTFLAEW 221 (294)
T ss_pred cHHHHHHHHHHHHHHh
Confidence 4666666666665433
No 300
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=38.41 E-value=3.5e+02 Score=25.63 Aligned_cols=48 Identities=19% Similarity=0.134 Sum_probs=24.5
Q ss_pred hhhHHhhhhC----CchhhHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhh
Q 024030 70 VIGNLSDQYG----RKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAM 119 (273)
Q Consensus 70 ~~g~l~dr~g----rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 119 (273)
+.+-++|.=| |.+-++++.+++.++.+...+.... .|++....++.++
T Consensus 42 ia~~l~D~~~~~~~R~~~l~it~~~f~i~sl~v~ll~~~--p~~~~~~l~~~tf 93 (701)
T TIGR01667 42 IAAGLDDLDDRLTGRLKNLIITLSCFSIASFLVQLLFPK--PWLFPFLLTLLTF 93 (701)
T ss_pred HhhccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHH
Confidence 3455677544 4555666666666665554443331 3444444444443
No 301
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=38.24 E-value=2.6e+02 Score=24.12 Aligned_cols=29 Identities=17% Similarity=0.160 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHhhhchhhHHHHHHHHHHh
Q 024030 106 FFYAYYALRTLTAMVCEGSINCLALAYVAD 135 (273)
Q Consensus 106 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~ 135 (273)
..+.+++.-.+.|. -.|.-.|....+...
T Consensus 104 ~~~Vly~lt~vIG~-LVG~EiPL~mrml~~ 132 (508)
T COG4262 104 SRLVLYALTAVIGV-LVGAEIPLLMRMLQR 132 (508)
T ss_pred HHHHHHHHHHHHHH-HHhcchHHHHHHHHH
Confidence 35677777777775 445555777766655
No 302
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=37.99 E-value=1.6e+02 Score=27.04 Aligned_cols=61 Identities=10% Similarity=0.018 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024030 106 FFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL 167 (273)
Q Consensus 106 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l 167 (273)
+.++.+--.++.|+ +..+......-+.-+-+|++-|+.+++++....++|..+...+....
T Consensus 457 Si~W~iPQyvLig~-~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~t~a~G~~lss~Lv~~v 517 (571)
T KOG1237|consen 457 SILWQIPQYVLLGA-GEVFTSVGGLEFFYSQAPESMKSVATALWLLTVAVGNYLSSVLVSLV 517 (571)
T ss_pred eHHHHHHHHHHHHH-HHHHHhhhhHHHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777888897 66666666667777889999999999999999999998887776443
No 303
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=37.92 E-value=66 Score=21.94 Aligned_cols=47 Identities=19% Similarity=0.091 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHH
Q 024030 53 SGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILA 99 (273)
Q Consensus 53 ~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~ 99 (273)
.|-+...+.-..++.++.+++..|+..+-+-=.+|..+..++..+..
T Consensus 56 fGRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~ 102 (107)
T PF02694_consen 56 FGRVYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIIL 102 (107)
T ss_pred chhHHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheE
Confidence 36666777888889999999999998877666666666665554443
No 304
>PF13493 DUF4118: Domain of unknown function (DUF4118); PDB: 2KSF_A.
Probab=37.92 E-value=85 Score=20.90 Aligned_cols=21 Identities=38% Similarity=0.420 Sum_probs=13.9
Q ss_pred HHHHHhHhhhhhHHhhhhCCc
Q 024030 61 GLGTLVMMPVIGNLSDQYGRK 81 (273)
Q Consensus 61 ~~~~~~~~~~~g~l~dr~grr 81 (273)
....++.+.+.|.+.||..||
T Consensus 85 ~~~~l~va~v~g~l~~~~r~~ 105 (105)
T PF13493_consen 85 FAVFLVVALVTGYLADRYRRQ 105 (105)
T ss_dssp HHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHhhC
Confidence 455567777789999998876
No 305
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=37.11 E-value=19 Score=25.60 Aligned_cols=14 Identities=29% Similarity=0.259 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q 024030 170 TSAFQAATIVSMLA 183 (273)
Q Consensus 170 ~~~~~~~~~~~~~~ 183 (273)
||++++..++.++.
T Consensus 1 RW~l~~iii~~i~l 14 (130)
T PF12273_consen 1 RWVLFAIIIVAILL 14 (130)
T ss_pred CeeeHHHHHHHHHH
Confidence 34444444444333
No 306
>KOG3097 consensus Predicted membrane protein [Function unknown]
Probab=36.74 E-value=2.7e+02 Score=23.79 Aligned_cols=74 Identities=24% Similarity=0.438 Sum_probs=51.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhc-cCchhHHHHHHHHHHHhh
Q 024030 46 CSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYR-RSISFFYAYYALRTLTAM 119 (273)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~g~ 119 (273)
-.......|..+..+.+...+.+.+.|.+..++||-+.+..+.+....-.....+. ++....|.+.+...+.|.
T Consensus 305 c~~Gv~~igf~m~cfgv~~Av~S~~~g~L~~~~gr~~~~v~gavv~l~li~~~~~w~~~~~~~~i~y~~aalwgv 379 (390)
T KOG3097|consen 305 CALGVSRIGFAMACFGVGDAVASSLFGLLGKWIGRPPLLVLGAVVHLLLITILFFWAPNPQDSWIFYVAAALWGV 379 (390)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHHhcccCCCCceEEEeehhhcCc
Confidence 34555678999999999999999999999999999998887776655444333322 121223445555555565
No 307
>PF06783 UPF0239: Uncharacterised protein family (UPF0239); InterPro: IPR009621 This is a group of transmembrane proteins of unknown function.; GO: 0016021 integral to membrane
Probab=35.93 E-value=1.1e+02 Score=19.93 Aligned_cols=20 Identities=5% Similarity=0.120 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024030 170 TSAFQAATIVSMLAAAYMRV 189 (273)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~ 189 (273)
|..+++.+++-+++++.+.+
T Consensus 23 RYGLf~GAIFQliCilAiI~ 42 (85)
T PF06783_consen 23 RYGLFVGAIFQLICILAIIL 42 (85)
T ss_pred HHHHHHHHHHHHHHHHheee
Confidence 55566666666665554333
No 308
>PF02632 BioY: BioY family; InterPro: IPR003784 BioMNY proteins are considered to constitute tripartite biotin transporters in prokaryotes. One-third of the widespread bioY genes are linked to bioMN. Many bioY genes are located at loci encoding biotin biosynthesis, while others are unlinked to biotin metabolic or transport genes. BioY is a high-capacity transporter that is converted to a high-affinity system in the presence of BioMN. BioMNY-mediated biotin uptake is severely impaired by the replacement of the Walker A lysine residue in BioM, demonstrating the dependency of high-affinity transport on a functional ATPase [].
Probab=34.08 E-value=1.7e+02 Score=21.37 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=18.4
Q ss_pred HHHHHHhHhhhhhHHhhhhCCch
Q 024030 60 IGLGTLVMMPVIGNLSDQYGRKA 82 (273)
Q Consensus 60 ~~~~~~~~~~~~g~l~dr~grr~ 82 (273)
+.++..+...+.|++.+|..+++
T Consensus 62 yl~gf~~~a~i~g~~~~~~~~~~ 84 (148)
T PF02632_consen 62 YLLGFPLAALIIGLLAERLKRSR 84 (148)
T ss_pred HHHHHHHHHHHHHHHHHhccccc
Confidence 46677888888999999988764
No 309
>PF04281 Tom22: Mitochondrial import receptor subunit Tom22 ; InterPro: IPR005683 The mitochondrial protein translocase family, which is responsible for movement of nuclear encoded pre-proteins into mitochondria, is very complex with at least 19 components. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family represents the Tom22 proteins []. The N-terminal region of Tom22 has been shown to have chaperone-like activity, and the C-terminal region faces the intermembrane face []. ; GO: 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane
Probab=33.12 E-value=1.9e+02 Score=20.88 Aligned_cols=29 Identities=14% Similarity=-0.150 Sum_probs=20.9
Q ss_pred HHHhcCChhhHHHHHHHHHHHHHHHHHHH
Q 024030 132 YVADNISERQRASAFGILLGVLSASFVCG 160 (273)
Q Consensus 132 ~~~~~~~~~~r~~~~~~~~~~~~~g~~~g 160 (273)
-+.|++|+..|..+.+..+.......-..
T Consensus 59 aLkdi~P~~~R~~i~~~~~~~~~~~k~~~ 87 (137)
T PF04281_consen 59 ALKDIFPPSVRNWISSTVSTTSSAVKSLF 87 (137)
T ss_pred HHhccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999988887766555444333
No 310
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=33.06 E-value=4.2e+02 Score=24.90 Aligned_cols=60 Identities=8% Similarity=0.014 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024030 107 FYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL 167 (273)
Q Consensus 107 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l 167 (273)
.++.+.-.++.+. +..+......-..-+-.|++.|....++.....++|..+...+...-
T Consensus 565 ~~wq~pq~~~~~~-~e~~~~~~~~e~~~~~~p~~mks~~~a~~~~~~~~g~~~~~~~~~~~ 624 (654)
T TIGR00926 565 ILWQIPQYVILTA-GEVLFSVTGLEFSYSQAPPNMKSVLQALWLLTVAIGNLIVVVIAEFE 624 (654)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHhhHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444445555554 43333334444455567888898888888888888888876665443
No 311
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=32.37 E-value=3.9e+02 Score=24.30 Aligned_cols=46 Identities=11% Similarity=0.021 Sum_probs=33.7
Q ss_pred HHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHH
Q 024030 112 ALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFV 158 (273)
Q Consensus 112 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ 158 (273)
+..++..+ ..-..+.+..++-+++.+|..=|+.|.+.++..|+|+-
T Consensus 410 ~~~~l~sf-~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGt 455 (544)
T PF13000_consen 410 IQHVLSSF-MSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGT 455 (544)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCC
Confidence 33444444 33444467788889999999999999999998888753
No 312
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=31.93 E-value=3.8e+02 Score=24.11 Aligned_cols=74 Identities=16% Similarity=0.240 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHH
Q 024030 10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP 87 (273)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~ 87 (273)
+..+.......++....+....-..+++.. .++...+.. .|-..+..++...+..++.+.+.+|+|-+...++.
T Consensus 282 L~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~---~~~~~ysaf-mG~~~~~tGivtii~~~l~~~iir~~GW~~~Alit 355 (491)
T PF03219_consen 282 LLCIALLVIAYGISINLVEVVWKSQLKQLY---PDPNDYSAF-MGKFSSWTGIVTIIMMFLSSNIIRRFGWRTAALIT 355 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCchHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 334444444455555555554444454432 222234443 46667777777788889999999999988765543
No 313
>PF10183 ESSS: ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) ; InterPro: IPR019329 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents the ESSS subunit from mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences [].
Probab=31.80 E-value=89 Score=21.26 Aligned_cols=28 Identities=11% Similarity=0.006 Sum_probs=19.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 024030 168 STTSAFQAATIVSMLAAAYMRVFLKDDV 195 (273)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (273)
+|+.++++...++++.+.+.+...|++.
T Consensus 58 ~we~~~f~~~~~~~v~~~~~~~y~PD~~ 85 (105)
T PF10183_consen 58 GWELPFFFGFSGSLVFGGVFLAYKPDTS 85 (105)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 7888888877777666666555666654
No 314
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=30.81 E-value=1.1e+02 Score=17.66 Aligned_cols=30 Identities=20% Similarity=0.239 Sum_probs=17.2
Q ss_pred HHHHHhHhhhhhHHhhh-hCCchhhHHHHHH
Q 024030 61 GLGTLVMMPVIGNLSDQ-YGRKAMLTLPLTL 90 (273)
Q Consensus 61 ~~~~~~~~~~~g~l~dr-~grr~~~~~~~~~ 90 (273)
.+..++.....|+..|+ +|.++...+..++
T Consensus 10 ~~~~i~~g~~~G~~lD~~~~t~p~~~~~g~l 40 (55)
T PF09527_consen 10 MAAPILVGFFLGYWLDKWFGTSPWFTLIGLL 40 (55)
T ss_pred HHHHHHHHHHHHHHHHHHcCCChHHHHHHHH
Confidence 44445566667888886 4665555444333
No 315
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=29.76 E-value=1.8e+02 Score=19.66 Aligned_cols=29 Identities=17% Similarity=0.171 Sum_probs=15.3
Q ss_pred HHHHhHhhhhhHHhhh-hCCchhhHHHHHH
Q 024030 62 LGTLVMMPVIGNLSDQ-YGRKAMLTLPLTL 90 (273)
Q Consensus 62 ~~~~~~~~~~g~l~dr-~grr~~~~~~~~~ 90 (273)
+...+...+.|.+.|+ ++-++.+.+.+++
T Consensus 53 v~pil~G~~lG~WLD~~~~t~~~~tl~~ll 82 (100)
T TIGR02230 53 AIPTLLGVAVGIWLDRHYPSPFSWTLTMLI 82 (100)
T ss_pred HHHHHHHHHHHHHHHhhcCCCcHHHHHHHH
Confidence 3344555556777775 5655544443333
No 316
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=28.97 E-value=4.2e+02 Score=23.69 Aligned_cols=76 Identities=17% Similarity=0.231 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHH
Q 024030 13 LFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSI 92 (273)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~ 92 (273)
+....++.+...+.+....-..+.+.. + +....+ ...|.......+..++.+++.+++.+|+|-+....+.-+...
T Consensus 269 ia~~vi~y~~~~nlve~~~k~~v~~~~-p--~~~~~~-~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a~i~Pii~l 344 (472)
T TIGR00769 269 LALLVIAYGISINLVEVTWKSKLKAQY-P--SPNEYS-AFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTAALITPLVML 344 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHC-C--CHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 333444444444444443444444432 1 222233 344666777777777888888999999998876655444333
No 317
>TIGR00986 3a0801s05tom22 mitochondrial import receptor subunit Tom22. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom22 proteins.
Probab=27.73 E-value=2.4e+02 Score=20.48 Aligned_cols=27 Identities=7% Similarity=-0.069 Sum_probs=19.9
Q ss_pred HHHHhcCChhhHHHHHHHHHHHHHHHH
Q 024030 131 AYVADNISERQRASAFGILLGVLSASF 157 (273)
Q Consensus 131 ~~~~~~~~~~~r~~~~~~~~~~~~~g~ 157 (273)
.-+.|++|+..|..+.+..+.......
T Consensus 56 ~ALkDm~Pp~~R~~i~~~~s~t~s~~k 82 (145)
T TIGR00986 56 YALKDIVPPTTRGWIYHKYSTTTNFVK 82 (145)
T ss_pred HHHHhhCCHHHHHHHHHHHHHHHHHHH
Confidence 346799999999988877766555443
No 318
>COG3559 TnrB3 Putative exporter of polyketide antibiotics [Cell envelope biogenesis, outer membrane]
Probab=27.65 E-value=4.3e+02 Score=23.38 Aligned_cols=27 Identities=11% Similarity=0.047 Sum_probs=16.1
Q ss_pred chhhHHHHHHHHHHhcCChhhHHHHHH
Q 024030 121 CEGSINCLALAYVADNISERQRASAFG 147 (273)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~r~~~~~ 147 (273)
..|+.+....+...+..|...-.++++
T Consensus 174 ~tg~~~~avaalf~qL~~~a~~t~g~~ 200 (536)
T COG3559 174 ATGMVFTAVAALFAQLSPSARFTRGVA 200 (536)
T ss_pred HHHHHHHHHHHHHHHhCccccccchhH
Confidence 345555677777888887554333333
No 319
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=26.72 E-value=4.3e+02 Score=24.26 Aligned_cols=42 Identities=17% Similarity=0.235 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHH
Q 024030 50 IYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSII 93 (273)
Q Consensus 50 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~ 93 (273)
..+.|+...++.++.-.+.-+...+.+ .|-+..+ .+.+...+
T Consensus 449 l~~~GL~lFla~vG~~aG~~f~~~l~~-~G~~~~~-~g~~~~~~ 490 (562)
T TIGR03802 449 LKDLGLALFIAVVGLSAGPQAVTAIKE-MGLTLFL-LGIVVTIL 490 (562)
T ss_pred HHHHhHHHHHHHHHHhhhHHHHHHHHH-hhHHHHH-HHHHHHHH
Confidence 345788888888888888877777643 5655443 44444433
No 320
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=25.79 E-value=23 Score=29.37 Aligned_cols=22 Identities=0% Similarity=0.093 Sum_probs=0.0
Q ss_pred HhhhchhhHHHHHHHHHHhcCChh
Q 024030 117 TAMVCEGSINCLALAYVADNISER 140 (273)
Q Consensus 117 ~g~~~~~~~~~~~~~~~~~~~~~~ 140 (273)
.|. +.+.......++.+. +|++
T Consensus 7 ~~~-~~~~~q~s~~glas~-~p~~ 28 (309)
T PF01733_consen 7 IGF-ANAVLQSSLFGLASL-FPPK 28 (309)
T ss_dssp ------------------------
T ss_pred EHh-hhHHHhccHHHHHhc-CCHH
Confidence 343 444554555555554 5543
No 321
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=25.40 E-value=4.2e+02 Score=22.50 Aligned_cols=19 Identities=11% Similarity=-0.057 Sum_probs=10.9
Q ss_pred HHHhhcchhHHHHHHHHHh
Q 024030 240 CLLRSSVTLSQAAVVAFFS 258 (273)
Q Consensus 240 ~~l~~~~~~~~~~~~~~~~ 258 (273)
....+||.++...+...+.
T Consensus 239 ~~~~~nP~~~a~~lgli~~ 257 (385)
T PF03547_consen 239 LKLFKNPPLIAIILGLIIG 257 (385)
T ss_pred HHHHhCcHHHHHHHHHHHH
Confidence 3355677777665554443
No 322
>PRK11588 hypothetical protein; Provisional
Probab=23.70 E-value=5.5e+02 Score=23.25 Aligned_cols=30 Identities=17% Similarity=0.165 Sum_probs=15.0
Q ss_pred hHHhhhhCCchhhHHH--HHHHHHHHHHHHhc
Q 024030 72 GNLSDQYGRKAMLTLP--LTLSIIPLAILAYR 101 (273)
Q Consensus 72 g~l~dr~grr~~~~~~--~~~~~~~~~~~~~~ 101 (273)
+++.+|++.|..+++- ..++.++...++..
T Consensus 137 ~~l~~k~~~~~~llIpil~~lFsl~G~~~G~~ 168 (506)
T PRK11588 137 LALIRKTRGNEILFIPVLFILFSLGGAVFGMG 168 (506)
T ss_pred HHHHHHhCCCcEEeHHHHHHHHHHHHHHhhhh
Confidence 5667788766544433 33333333334443
No 323
>PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although a few members are thought to be membrane proteins.
Probab=22.97 E-value=3.5e+02 Score=20.73 Aligned_cols=30 Identities=20% Similarity=0.207 Sum_probs=12.3
Q ss_pred HhHhhhhhHH---hhhhCCchhhHHHHHHHHHH
Q 024030 65 LVMMPVIGNL---SDQYGRKAMLTLPLTLSIIP 94 (273)
Q Consensus 65 ~~~~~~~g~l---~dr~grr~~~~~~~~~~~~~ 94 (273)
+++..+.+.+ .+|..+|+..........+.
T Consensus 60 ~~G~~~~~~i~~~~~~~~~~~~~~~~l~~~~~l 92 (209)
T PF06912_consen 60 ILGAFLAGLIVRRSRRRRRRRWYRILLLLEAIL 92 (209)
T ss_pred HHHHHHHHHHHHhccccchhHHHHHHHHHHHHH
Confidence 3344444444 22333444444444443333
No 324
>PF04226 Transgly_assoc: Transglycosylase associated protein; InterPro: IPR007341 This bacterial protein is predicted to be an integral membrane protein. Some family members have been annotated as transglycosylase-associated proteins, but no experimental evidence is provided. This family was annotated based on the information in P76011 from SWISSPROT.; GO: 0016021 integral to membrane
Probab=22.06 E-value=1.7e+02 Score=16.62 Aligned_cols=32 Identities=6% Similarity=0.078 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHhhh----HHHHHHHHHHHHHHHHH
Q 024030 155 ASFVCGTLAARFLST----TSAFQAATIVSMLAAAY 186 (273)
Q Consensus 155 ~g~~~gp~~~~~l~~----~~~~~~~~~~~~~~~~~ 186 (273)
+|+.+|..+.+.++. .+.-.+.+++.++.++.
T Consensus 6 iGa~vGg~l~~~lg~~~~~~~~~~i~aviGAiill~ 41 (48)
T PF04226_consen 6 IGAFVGGWLFGLLGINGGGSWGSFIVAVIGAIILLF 41 (48)
T ss_pred HHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHH
Confidence 345555555554433 33333444444444444
No 325
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=21.79 E-value=2.4e+02 Score=18.45 Aligned_cols=32 Identities=6% Similarity=0.044 Sum_probs=18.6
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhh
Q 024030 7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMA 38 (273)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 38 (273)
++..+.+....+...+++.....+-|..+...
T Consensus 15 ~r~~~~l~~i~l~~y~~~~ll~a~~p~~m~~~ 46 (91)
T PF04341_consen 15 RRLAWPLSAIFLVLYFGFVLLSAFAPELMATP 46 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCHHHHcCc
Confidence 34444445555556666666666777776553
No 326
>PF07760 DUF1616: Protein of unknown function (DUF1616); InterPro: IPR011674 This is a group of sequences from hypothetical archaeal proteins. The region in question is approximately 330 amino acid residues long.
Probab=21.50 E-value=4.6e+02 Score=21.52 Aligned_cols=55 Identities=16% Similarity=0.067 Sum_probs=28.7
Q ss_pred HHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024030 111 YALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL 167 (273)
Q Consensus 111 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l 167 (273)
-..|.+.|+ -. ......++++.-.+|++++-...--.....+++..+-|++|-.+
T Consensus 23 ~~lr~~~g~-~~-vlf~PGy~l~~~lfp~~~~l~~~er~~ls~glSi~~~~~~g~~l 77 (287)
T PF07760_consen 23 PPLRVILGF-PF-VLFLPGYALVAALFPRKHDLDGIERLALSVGLSIAIVPLIGLLL 77 (287)
T ss_pred hHHHHHHHH-HH-HHHhccHHHHHHHccCcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666665 22 22246777888888854433222222333334444556666555
No 327
>PF11752 DUF3309: Protein of unknown function (DUF3309); InterPro: IPR021738 This family is conserved in bacteria but its function is not known.
Probab=21.43 E-value=85 Score=17.98 Aligned_cols=34 Identities=21% Similarity=0.016 Sum_probs=25.0
Q ss_pred HHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHH
Q 024030 61 GLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIP 94 (273)
Q Consensus 61 ~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~ 94 (273)
.+..+++..+....+..+|..+.-..+.++..+.
T Consensus 8 Lil~LigalP~wp~sr~wGy~PsG~lG~ilvivi 41 (49)
T PF11752_consen 8 LILLLIGALPTWPYSRGWGYGPSGGLGLILVIVI 41 (49)
T ss_pred HHHHHHhcCCCCCCCCCCCcCCccHHHHHHHHHH
Confidence 4445677777778888999998888777765554
Done!