Query Summary

Your job contains 1 sequence.

Parameters

Threshold: 0.001

Maximum number of alignments shown: 100

BLAST filter: on

Query Sequence

>024032
MKSQLSCGEVDEYDPSGLVYCWWRSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLAL
IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYS
VLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELS
SWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALKA
GDSKPLDATKRLFSAPGLRKCSKISFCILVCFS

High Scoring Gene Products

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  024032
        (273 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2123236 - symbol:AT4G13030 species:3702 "Arabi...   207  5.1e-16   1


>TAIR|locus:2123236 [details] [associations]
            symbol:AT4G13030 species:3702 "Arabidopsis thaliana"
            [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] EMBL:CP002687 GO:GO:0016787
            IPI:IPI00536217 RefSeq:NP_193039.3 UniGene:At.3517
            ProteinModelPortal:F4JS74 SMR:F4JS74 EnsemblPlants:AT4G13030.1
            GeneID:826917 KEGG:ath:AT4G13030 OMA:MALASIW PhylomeDB:F4JS74
            Uniprot:F4JS74
        Length = 481

 Score = 207 (77.9 bits), Expect = 5.1e-16, P = 5.1e-16
 Identities = 57/194 (29%), Positives = 97/194 (50%)

Query:    51 VLREMERLALIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSG 110
             +L+  + L   +   L + R++ LSY  G  W     ++    +IP   +I+L+G  G+G
Sbjct:    63 ILQSHDLLLRTSKRKLRQARNEILSYTPGS-W---SDVKLSDYNIPKTTSIMLVGPKGAG 118

Query:   111 KSSLVNLMYSVLSRSGLVLF-AQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNY 169
             KSSLVN +  V+     +L  AQ S G  S   T +++E+ + R   + FC+YD+RG + 
Sbjct:   119 KSSLVNKITRVIEDDAFLLDRAQESFGTPSKGGTYFVQEYMISRGGSASFCLYDTRGLSR 178

Query:   170 NRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVS 229
                 +    +  WM+ GV H +  + + D + +K D  I D      Y  R+V+  + V 
Sbjct:   179 ISSSDNTSMIEQWMTRGVLHGEPVIWASDSSDLK-DRLIRD--GGTGYERRKVNSIIFVV 235

Query:   230 NIAEIYKALKAGDS 243
             N  EI K+++   S
Sbjct:   236 NAVEILKSMECETS 249


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.136   0.413    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      273       273    0.0010  114 3  11 22  0.46    33
                                                     32  0.40    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  614 (65 KB)
  Total size of DFA:  213 KB (2119 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  23.89u 0.20s 24.09t   Elapsed:  00:00:01
  Total cpu time:  23.89u 0.20s 24.09t   Elapsed:  00:00:01
  Start:  Sat May 11 07:51:50 2013   End:  Sat May 11 07:51:51 2013

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