BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024032
(273 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3H32|A Chain A, Crystal Structure Of D-Dimer From Human Fibrin Complexed
With Gly-His- Arg-Pro-Tyr-Amide
pdb|3H32|D Chain D, Crystal Structure Of D-Dimer From Human Fibrin Complexed
With Gly-His- Arg-Pro-Tyr-Amide
Length = 197
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 9/67 (13%)
Query: 129 LFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGL----EELSSWMS 184
LF + SH++T N+M L+ F ++R YNRV E L E L +
Sbjct: 73 LFEYQKNNKDSHSLTT-----NIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVI 127
Query: 185 EGVHHNQ 191
E V H Q
Sbjct: 128 EKVQHIQ 134
>pdb|2P67|A Chain A, Crystal Structure Of LaoAO TRANSPORT SYSTEM KINASE
Length = 341
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 12/94 (12%)
Query: 37 LDLPNVSTLTPRLRVLREMERLALIAPDGLNEL---RHKFLSYRSGDFWIPIGGIQKGGM 93
+ L N +TL +R LR+ ER L L E RH+ LS + D +P G
Sbjct: 1 MSLINEATLAESIRRLRQGERATLAQAMTLVESRHPRHQALSTQLLDAIMPYCG------ 54
Query: 94 DIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGL 127
+ + + G G+GKS+ + +L R GL
Sbjct: 55 ---NTLRLGVTGTPGAGKSTFLEAFGMLLIREGL 85
>pdb|1FWX|A Chain A, Crystal Structure Of Nitrous Oxide Reductase From P.
Denitrificans
pdb|1FWX|B Chain B, Crystal Structure Of Nitrous Oxide Reductase From P.
Denitrificans
pdb|1FWX|C Chain C, Crystal Structure Of Nitrous Oxide Reductase From P.
Denitrificans
pdb|1FWX|D Chain D, Crystal Structure Of Nitrous Oxide Reductase From P.
Denitrificans
Length = 595
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 226 MVVSNIAEIYKALKAGDSKPLDATK 250
+VV NIAEI KA+ AGD + L+ K
Sbjct: 233 IVVFNIAEIEKAIAAGDYQELNGVK 257
>pdb|4GXW|A Chain A, Crystal Structure Of A Cog1816 Amidohydrolase (Target
Efi-505188) From Burkhoderia Ambifaria, With Bound Zn
pdb|4GXW|B Chain B, Crystal Structure Of A Cog1816 Amidohydrolase (Target
Efi-505188) From Burkhoderia Ambifaria, With Bound Zn
Length = 380
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 7/71 (9%)
Query: 49 LRVLREMERLALIAPDGLNELRHKFLSYRSGD-------FWIPIGGIQKGGMDIPPVITI 101
L VLR ++R L PD L + +++L + FW P G ++ G+
Sbjct: 77 LHVLRALDRYLLTRPDDLRRIAYEYLEDAAAHNVRHAEFFWNPTGTVRVSGIPYADAQAA 136
Query: 102 LLMGFSGSGKS 112
++ G + +
Sbjct: 137 IVTGMRDAARD 147
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 74 LSYRSGDFWIP---IGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLM 118
L +R+ F P + ++ + IP T+ L+G SGSGKS++ +L+
Sbjct: 342 LEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLI 389
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 95 IPPVITILLMGFSGSGKSSLVNLMYSVLSRSG 126
IP T L+G +GSGKS++ L+Y G
Sbjct: 43 IPSGTTCALVGHTGSGKSTIAKLLYRFYDAEG 74
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 95 IPPVITILLMGFSGSGKSSLVNL 117
IP T+ L+G SGSGKS++ NL
Sbjct: 366 IPQGKTVALVGRSGSGKSTIANL 388
>pdb|2XRY|A Chain A, X-Ray Structure Of Archaeal Class Ii Cpd Photolyase From
Methanosarcina Mazei
pdb|2XRZ|A Chain A, X-Ray Structure Of Archaeal Class Ii Cpd Photolyase From
Methanosarcina Mazei In Complex With Intact Cpd-Lesion
pdb|2XRZ|B Chain B, X-Ray Structure Of Archaeal Class Ii Cpd Photolyase From
Methanosarcina Mazei In Complex With Intact Cpd-Lesion
Length = 482
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/90 (21%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Query: 117 LMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGL 176
L + +S +VL + + N + +++E + + + FC Y N ++G
Sbjct: 289 LHFGQISSQRVVLEVEKAESNPG-SKKAFLDEILIWKEISDNFCYY-------NPGYDGF 340
Query: 177 EELSSWMSEGVHHNQRCLRSDDCALMKNDA 206
E SW E ++ ++ +RS L + +A
Sbjct: 341 ESFPSWAKESLNAHRNDVRSHIYTLEEFEA 370
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Query: 102 LLMGFSGSGKSSLVNLM--YSVLSRSGLVLFAQTSS--GNSSHTITMYME--EHNVMRSL 155
+L G +G+GK++L+N++ Y + + LF + G S+ T+ ++ H+++
Sbjct: 51 ILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXPGKVGYSAETVRQHIGFVSHSLLEKF 110
Query: 156 QSGFCVYD 163
Q G V D
Sbjct: 111 QEGERVID 118
>pdb|3GHG|A Chain A, Crystal Structure Of Human Fibrinogen
pdb|3GHG|D Chain D, Crystal Structure Of Human Fibrinogen
pdb|3GHG|G Chain G, Crystal Structure Of Human Fibrinogen
pdb|3GHG|J Chain J, Crystal Structure Of Human Fibrinogen
Length = 562
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 9/67 (13%)
Query: 129 LFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGL----EELSSWMS 184
LF + SH++T N+M L+ F ++R YNRV E L E L +
Sbjct: 73 LFEYQKNNKDSHSLTT-----NIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVI 127
Query: 185 EGVHHNQ 191
E V H Q
Sbjct: 128 EKVQHIQ 134
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 28.1 bits (61), Expect = 6.2, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 82 WIPIGGIQKGGMD-----IPPVITILLMGFSGSGKSSLVN 116
W+ + G+ + +D P + + G SGSGKS+LV+
Sbjct: 502 WLELNGVTRNNLDNLDVRFPLGVMTSVTGVSGSGKSTLVS 541
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 74 LSYRSGDFWIP---IGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLM 118
+ +R+ F P + ++ + IP T+ L+G SGSGKS++ +L+
Sbjct: 342 VEFRNVTFTYPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLI 389
>pdb|2KXE|A Chain A, N-Terminal Domain Of The Dp1 Subunit Of An Archaeal
D-Family Dna Polymerase
Length = 75
Score = 27.7 bits (60), Expect = 7.6, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 85 IGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVL 129
+ G+ K G I P LL+G GK SL+ L+ SR ++
Sbjct: 8 VKGLMKNGYLITPSAYYLLVGHFNEGKFSLIELIKFAKSRETFII 52
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 27.7 bits (60), Expect = 7.6, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
Query: 82 WIPIGGIQKGGMD-----IPPVITILLMGFSGSGKSSLVN-LMYSVLSR 124
W+ + G ++ + IP + + G SGSGKS+LVN ++Y L++
Sbjct: 629 WLEVVGAREHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQ 677
>pdb|2IWF|A Chain A, Resting Form Of Pink Nitrous Oxide Reductase From
Achromobacter Cycloclastes
pdb|2IWF|B Chain B, Resting Form Of Pink Nitrous Oxide Reductase From
Achromobacter Cycloclastes
pdb|2IWK|A Chain A, Inhibitor-Bound Form Of Nitrous Oxide Reductase From
Achromobacter Cycloclastes At 1.7 Angstrom Resolution
pdb|2IWK|B Chain B, Inhibitor-Bound Form Of Nitrous Oxide Reductase From
Achromobacter Cycloclastes At 1.7 Angstrom Resolution
Length = 642
Score = 27.7 bits (60), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 226 MVVSNIAEIYKALKAGDSKPLDATK 250
+VV NIAEI KA+KAG + ++ K
Sbjct: 280 VVVFNIAEIEKAIKAGQYEEINGVK 304
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 27.3 bits (59), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 95 IPPVITILLMGFSGSGKSSLVN-LMYSVLSR 124
IP + + G SGSGKS+LVN ++Y L++
Sbjct: 345 IPLGTFVAVTGVSGSGKSTLVNEVLYKALAQ 375
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 27.3 bits (59), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 95 IPPVITILLMGFSGSGKSSLVN-LMYSVLSR 124
IP + + G SGSGKS+LVN ++Y L++
Sbjct: 647 IPLGTFVAVTGVSGSGKSTLVNEVLYKALAQ 677
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,102,859
Number of Sequences: 62578
Number of extensions: 314531
Number of successful extensions: 967
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 961
Number of HSP's gapped (non-prelim): 27
length of query: 273
length of database: 14,973,337
effective HSP length: 97
effective length of query: 176
effective length of database: 8,903,271
effective search space: 1566975696
effective search space used: 1566975696
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)