BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024032
(273 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8PGW9|RSGA_XANAC Putative ribosome biogenesis GTPase RsgA OS=Xanthomonas axonopodis
pv. citri (strain 306) GN=rsgA PE=3 SV=1
Length = 363
Score = 39.7 bits (91), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 66/160 (41%), Gaps = 13/160 (8%)
Query: 100 TILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGF 159
T +L+G SG+GKS+L N + + S G HT T H + L SG
Sbjct: 205 TAVLVGSSGAGKSTLTNTLLGTQKMKTNAVRENDSRGR--HTTT-----HRALIPLPSGA 257
Query: 160 CVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKND-----AEIDDLKSS 214
C+ D+ G + G E+L+ V R +DCA + A ID +
Sbjct: 258 CLIDTPGMRELK-PTGEEDLAEGGFSDVEALAAQCRFNDCAHIAEPGCAVRAAIDAGELD 316
Query: 215 PKYVLRRVDFAMVVSNIAEIYKALKAGDSKPLDATKRLFS 254
P+ V + M V++ AE A +++ + KR S
Sbjct: 317 PERVANYMKLRMEVASAAEKLATRVAQNNRGKGSGKRPAS 356
>sp|Q3BPG1|RSGA_XANC5 Putative ribosome biogenesis GTPase RsgA OS=Xanthomonas campestris
pv. vesicatoria (strain 85-10) GN=rsgA PE=3 SV=1
Length = 363
Score = 39.3 bits (90), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 69/167 (41%), Gaps = 15/167 (8%)
Query: 100 TILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGF 159
T +L+G SG+GKS+L N + + S G HT T H + L SG
Sbjct: 205 TAVLVGSSGAGKSTLTNTLLGTQKMKTNAVRENDSRGR--HTTT-----HRALIPLPSGA 257
Query: 160 CVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKND-----AEIDDLKSS 214
C+ D+ G + G E+L+ V R +DCA + A ID +
Sbjct: 258 CLIDTPGMRELK-PTGEEDLAEGGFSDVEALAAQCRFNDCAHIAEPGCAVRAAIDAGELD 316
Query: 215 PKYVLRRVDFAMVVSNIAEIYKALKAGDSKPLDATKRLFSA--PGLR 259
P+ V + + V++ AE A +++ + KR S PG R
Sbjct: 317 PERVANYMKLRVEVASAAEKLATRVAQNNRGKGSGKRPASVDRPGRR 363
>sp|Q9UPN3|MACF1_HUMAN Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 OS=Homo
sapiens GN=MACF1 PE=1 SV=4
Length = 7388
Score = 38.5 bits (88), Expect = 0.050, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 16/90 (17%)
Query: 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG----VHHNQRCLRSDDCAL 201
ME+ ++++LQ N H+ LE+L SW+ + H R + D AL
Sbjct: 3603 MEQEALVKTLQK----------QQNTCHQQLEDLCSWVGQAERALAGHQGRTTQQDLSAL 3652
Query: 202 MKNDAEIDDLKSSPKYVLRRVDFAMVVSNI 231
KN +++ DL+ + R FA VV +I
Sbjct: 3653 QKNQSDLKDLQDDIQN--RATSFATVVKDI 3680
>sp|Q8PTZ6|RSGA_METMA Putative ribosome biogenesis GTPase RsgA OS=Methanosarcina mazei
(strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833
/ OCM 88) GN=rsgA PE=3 SV=1
Length = 365
Score = 38.5 bits (88), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 88/215 (40%), Gaps = 40/215 (18%)
Query: 21 CWWRSAAK---FDECVKLKLDLPNVSTLTPRLRVLREMER-LALIAPDG------LNE-- 68
C R AA ++ + +D + T T + LR +ER LA++ G LN+
Sbjct: 101 CLSRGAAGDGGGEQVIAANIDTIFIVTATGKDLNLRRLERYLAIVYSSGARPVILLNKID 160
Query: 69 -------LRHKFLSYRSGDFWIPIGGIQKGGMD-----IPPVITILLMGFSGSGKSSLVN 116
L K S IP+ + K G++ + P T+ L+G SG GKS+L+N
Sbjct: 161 LEDNPIRLVEKIQSIAGNVPVIPLSALSKTGLEALSPHLNPGETVALVGSSGVGKSTLIN 220
Query: 117 -LMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEG 175
L+ + R+G + + HT T+ M L +G + D+ G ++ +
Sbjct: 221 SLLGETVQRTGGI---REDDEKGRHTTTVRQ-----MFLLPNGAVLIDNPGIREIQLGDS 272
Query: 176 LEELSSWMSEGVHHNQRCLRSD-------DCALMK 203
E + SE V C D CA++K
Sbjct: 273 AEGIEKAFSEIVDAASNCKFKDCTHRDEPGCAVLK 307
>sp|A3NBZ8|RSGA_BURP6 Putative ribosome biogenesis GTPase RsgA OS=Burkholderia
pseudomallei (strain 668) GN=rsgA PE=3 SV=1
Length = 314
Score = 37.7 bits (86), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 61/145 (42%), Gaps = 21/145 (14%)
Query: 100 TILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGF 159
+ +L+G SG GKS+LVNL+ + + A +SG + T T + LQ G
Sbjct: 183 STILLGQSGMGKSTLVNLLVPDAEAATREISAALNSGRHTTTFTR-------LYPLQDGG 235
Query: 160 CVYDSRGFN--------YNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDL 211
+ DS GF R+ E ++ +N L CA+++ + D
Sbjct: 236 ALIDSPGFQEFGLYHLTEGRLERAFPEFRPLLAHCRFYNCHHLHEPGCAILE---ALADG 292
Query: 212 KSSPKYVLRRVDFAMVVSNIAEIYK 236
+ +P R +A +V ++I +
Sbjct: 293 RIAPT---RHALYAQLVHEASQIVR 314
>sp|A3NXT4|RSGA_BURP0 Putative ribosome biogenesis GTPase RsgA OS=Burkholderia
pseudomallei (strain 1106a) GN=rsgA PE=3 SV=1
Length = 314
Score = 37.7 bits (86), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 61/145 (42%), Gaps = 21/145 (14%)
Query: 100 TILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGF 159
+ +L+G SG GKS+LVNL+ + + A +SG + T T + LQ G
Sbjct: 183 STILLGQSGMGKSTLVNLLVPDAEAATREISAALNSGRHTTTFTR-------LYPLQDGG 235
Query: 160 CVYDSRGFN--------YNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDL 211
+ DS GF R+ E ++ +N L CA+++ + D
Sbjct: 236 ALIDSPGFQEFGLYHLTEGRLERAFPEFRPLLAHCRFYNCHHLHEPGCAILE---ALADG 292
Query: 212 KSSPKYVLRRVDFAMVVSNIAEIYK 236
+ +P R +A +V ++I +
Sbjct: 293 RIAPT---RHALYAQLVHEASQIVR 314
>sp|A1V6I6|RSGA_BURMS Putative ribosome biogenesis GTPase RsgA OS=Burkholderia mallei
(strain SAVP1) GN=rsgA PE=3 SV=1
Length = 314
Score = 37.7 bits (86), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 61/145 (42%), Gaps = 21/145 (14%)
Query: 100 TILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGF 159
+ +L+G SG GKS+LVNL+ + + A +SG + T T + LQ G
Sbjct: 183 STILLGQSGMGKSTLVNLLVPNAEAATREISAALNSGRHTTTFTR-------LYPLQDGG 235
Query: 160 CVYDSRGFN--------YNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDL 211
+ DS GF R+ E ++ +N L CA+++ + D
Sbjct: 236 ALIDSPGFQEFGLYHLTEGRLERAFPEFRPLLAHCRFYNCHHLHEPGCAILE---ALADG 292
Query: 212 KSSPKYVLRRVDFAMVVSNIAEIYK 236
+ +P R +A +V ++I +
Sbjct: 293 RIAPT---RHALYAQLVHEASQIVR 314
>sp|Q62M59|RSGA_BURMA Putative ribosome biogenesis GTPase RsgA OS=Burkholderia mallei
(strain ATCC 23344) GN=rsgA PE=3 SV=1
Length = 314
Score = 37.7 bits (86), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 61/145 (42%), Gaps = 21/145 (14%)
Query: 100 TILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGF 159
+ +L+G SG GKS+LVNL+ + + A +SG + T T + LQ G
Sbjct: 183 STILLGQSGMGKSTLVNLLVPNAEAATREISAALNSGRHTTTFTR-------LYPLQDGG 235
Query: 160 CVYDSRGFN--------YNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDL 211
+ DS GF R+ E ++ +N L CA+++ + D
Sbjct: 236 ALIDSPGFQEFGLYHLTEGRLERAFPEFRPLLAHCRFYNCHHLHEPGCAILE---ALADG 292
Query: 212 KSSPKYVLRRVDFAMVVSNIAEIYK 236
+ +P R +A +V ++I +
Sbjct: 293 RIAPT---RHALYAQLVHEASQIVR 314
>sp|A2S4N1|RSGA_BURM9 Putative ribosome biogenesis GTPase RsgA OS=Burkholderia mallei
(strain NCTC 10229) GN=rsgA PE=3 SV=1
Length = 314
Score = 37.7 bits (86), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 61/145 (42%), Gaps = 21/145 (14%)
Query: 100 TILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGF 159
+ +L+G SG GKS+LVNL+ + + A +SG + T T + LQ G
Sbjct: 183 STILLGQSGMGKSTLVNLLVPNAEAATREISAALNSGRHTTTFTR-------LYPLQDGG 235
Query: 160 CVYDSRGFN--------YNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDL 211
+ DS GF R+ E ++ +N L CA+++ + D
Sbjct: 236 ALIDSPGFQEFGLYHLTEGRLERAFPEFRPLLAHCRFYNCHHLHEPGCAILE---ALADG 292
Query: 212 KSSPKYVLRRVDFAMVVSNIAEIYK 236
+ +P R +A +V ++I +
Sbjct: 293 RIAPT---RHALYAQLVHEASQIVR 314
>sp|A3MHS6|RSGA_BURM7 Putative ribosome biogenesis GTPase RsgA OS=Burkholderia mallei
(strain NCTC 10247) GN=rsgA PE=3 SV=1
Length = 314
Score = 37.7 bits (86), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 61/145 (42%), Gaps = 21/145 (14%)
Query: 100 TILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGF 159
+ +L+G SG GKS+LVNL+ + + A +SG + T T + LQ G
Sbjct: 183 STILLGQSGMGKSTLVNLLVPNAEAATREISAALNSGRHTTTFTR-------LYPLQDGG 235
Query: 160 CVYDSRGFN--------YNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDL 211
+ DS GF R+ E ++ +N L CA+++ + D
Sbjct: 236 ALIDSPGFQEFGLYHLTEGRLERAFPEFRPLLAHCRFYNCHHLHEPGCAILE---ALADG 292
Query: 212 KSSPKYVLRRVDFAMVVSNIAEIYK 236
+ +P R +A +V ++I +
Sbjct: 293 RIAPT---RHALYAQLVHEASQIVR 314
>sp|Q3JQ14|RSGA_BURP1 Putative ribosome biogenesis GTPase RsgA OS=Burkholderia
pseudomallei (strain 1710b) GN=rsgA PE=3 SV=1
Length = 314
Score = 37.7 bits (86), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 61/145 (42%), Gaps = 21/145 (14%)
Query: 100 TILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGF 159
+ +L+G SG GKS+LVNL+ + + A +SG + T T + LQ G
Sbjct: 183 STILLGQSGMGKSTLVNLLVPDAEAATREISAALNSGRHTTTFTR-------LYPLQDGG 235
Query: 160 CVYDSRGFN--------YNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDL 211
+ DS GF R+ E ++ +N L CA+++ + D
Sbjct: 236 ALIDSPGFQEFGLYHLTEGRLERAFPEFRPLLAHCRFYNCHHLHEPGCAILE---ALADG 292
Query: 212 KSSPKYVLRRVDFAMVVSNIAEIYK 236
+ +P R +A +V ++I +
Sbjct: 293 RIAPT---RHALYAQLVHEASQIVR 314
>sp|Q63S39|RSGA_BURPS Putative ribosome biogenesis GTPase RsgA OS=Burkholderia
pseudomallei (strain K96243) GN=rsgA PE=3 SV=1
Length = 314
Score = 37.7 bits (86), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 61/145 (42%), Gaps = 21/145 (14%)
Query: 100 TILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGF 159
+ +L+G SG GKS+LVNL+ + + A +SG + T T + LQ G
Sbjct: 183 STILLGQSGMGKSTLVNLLVPDAEAATREISAALNSGRHTTTFTR-------LYPLQDGG 235
Query: 160 CVYDSRGFN--------YNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDL 211
+ DS GF R+ E ++ +N L CA+++ + D
Sbjct: 236 ALIDSPGFQEFGLYHLTEGRLERAFPEFRPLLAHCRFYNCHHLHEPGCAILE---ALADG 292
Query: 212 KSSPKYVLRRVDFAMVVSNIAEIYK 236
+ +P R +A +V ++I +
Sbjct: 293 RIAPT---RHALYAQLVHEASQIVR 314
>sp|Q8P5H9|RSGA_XANCP Putative ribosome biogenesis GTPase RsgA OS=Xanthomonas campestris
pv. campestris (strain ATCC 33913 / NCPPB 528 / LMG 568)
GN=rsgA PE=3 SV=1
Length = 363
Score = 37.4 bits (85), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 69/167 (41%), Gaps = 15/167 (8%)
Query: 100 TILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGF 159
T +L+G SG+GKS+L N + + S G HT T H + L SG
Sbjct: 205 TAVLVGSSGAGKSTLTNTLLGTQKMKTNAVRENDSRGR--HTTT-----HRALIPLPSGA 257
Query: 160 CVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKND-----AEIDDLKSS 214
C+ D+ G + G E+L+ V R +DCA + A I+ +
Sbjct: 258 CLIDTPGMRELKP-TGEEDLAEGGFSDVEALAAQCRFNDCAHIAEPGCAVRAAIEADQLD 316
Query: 215 PKYVLRRVDFAMVVSNIAEIYKALKAGDSKPLDATKRLFSA--PGLR 259
P+ V + + V++ AE A +++ + KR S PG R
Sbjct: 317 PERVANYMKLRVEVASAAEKLATRVAQNNRGKGSGKRPASVDRPGRR 363
>sp|B0RNZ3|RSGA_XANCB Putative ribosome biogenesis GTPase RsgA OS=Xanthomonas campestris
pv. campestris (strain B100) GN=rsgA PE=3 SV=1
Length = 363
Score = 37.4 bits (85), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 69/167 (41%), Gaps = 15/167 (8%)
Query: 100 TILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGF 159
T +L+G SG+GKS+L N + + S G HT T H + L SG
Sbjct: 205 TAVLVGSSGAGKSTLTNTLLGTQKMKTNAVRENDSRGR--HTTT-----HRALIPLPSGA 257
Query: 160 CVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKND-----AEIDDLKSS 214
C+ D+ G + G E+L+ V R +DCA + A I+ +
Sbjct: 258 CLIDTPGMRELKP-TGEEDLAEGGFSDVEALAAQCRFNDCAHIAEPGCAVRAAIEADQLD 316
Query: 215 PKYVLRRVDFAMVVSNIAEIYKALKAGDSKPLDATKRLFSA--PGLR 259
P+ V + + V++ AE A +++ + KR S PG R
Sbjct: 317 PERVANYMKLRVEVASAAEKLATRVAQNNRGKGSGKRPASVDRPGRR 363
>sp|Q4UYJ6|RSGA_XANC8 Putative ribosome biogenesis GTPase RsgA OS=Xanthomonas campestris
pv. campestris (strain 8004) GN=rsgA PE=3 SV=1
Length = 363
Score = 37.4 bits (85), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 69/167 (41%), Gaps = 15/167 (8%)
Query: 100 TILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGF 159
T +L+G SG+GKS+L N + + S G HT T H + L SG
Sbjct: 205 TAVLVGSSGAGKSTLTNTLLGTQKMKTNAVRENDSRGR--HTTT-----HRALIPLPSGA 257
Query: 160 CVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKND-----AEIDDLKSS 214
C+ D+ G + G E+L+ V R +DCA + A I+ +
Sbjct: 258 CLIDTPGMRELKP-TGEEDLAEGGFSDVEALAAQCRFNDCAHIAEPGCAVRAAIEADQLD 316
Query: 215 PKYVLRRVDFAMVVSNIAEIYKALKAGDSKPLDATKRLFSA--PGLR 259
P+ V + + V++ AE A +++ + KR S PG R
Sbjct: 317 PERVANYMKLRVEVASAAEKLATRVAQNNRGKGSGKRPASVDRPGRR 363
>sp|B3EIT1|AROK_CHLL2 Shikimate kinase OS=Chlorobium limicola (strain DSM 245 / NBRC
103803) GN=aroK PE=3 SV=1
Length = 199
Score = 37.4 bits (85), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 18/124 (14%)
Query: 101 ILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTIT-MYMEE-HNVMRSLQSG 158
I L GFSGSGKS++ L+ + L G + Q + +IT ++ EE R+L+
Sbjct: 7 IFLTGFSGSGKSTIGPLLANSLG-YGFIDLDQEIESKAGKSITKIFAEEGEQTFRNLE-- 63
Query: 159 FCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYV 218
R G +EL + GV N C R L++ + + LKSSP+ +
Sbjct: 64 --------LETLRQLTGKKELVVSLGGGVLENNDCYR-----LIRENGTLVYLKSSPRSL 110
Query: 219 LRRV 222
RR+
Sbjct: 111 ARRL 114
>sp|O69051|PTXA_PSEST Phosphite import ATP-binding protein PxtA OS=Pseudomonas stutzeri
GN=ptxA PE=3 SV=1
Length = 275
Score = 36.6 bits (83), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 20/76 (26%)
Query: 51 VLREMERLALIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSG 110
VLR ++RL+++ P G+ LR +++R G+F + L+G SG+G
Sbjct: 10 VLR-VDRLSVVYPGGVTALRDTSIAFRRGEFTV-------------------LLGLSGAG 49
Query: 111 KSSLVNLMYSVLSRSG 126
KS+L+ + +++ +G
Sbjct: 50 KSTLLRSLNRLVTPTG 65
>sp|B2SLQ8|RSGA_XANOP Putative ribosome biogenesis GTPase RsgA OS=Xanthomonas oryzae pv.
oryzae (strain PXO99A) GN=rsgA PE=3 SV=1
Length = 363
Score = 35.8 bits (81), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 58/142 (40%), Gaps = 17/142 (11%)
Query: 100 TILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGF 159
T +L+G SG+GKS+L N + + S G HT T H + L SG
Sbjct: 205 TAVLVGSSGAGKSTLTNTLLGTEKMKTNGVRENDSRGR--HTTT-----HRALIPLPSGA 257
Query: 160 CVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKN---------DAEIDD 210
C+ D+ G + G E+L+ V R +DCA + +A++ D
Sbjct: 258 CLIDTPGMRELK-PTGEEDLAEGGFSDVEALAAQCRFNDCAHIAEPGCAVRAAIEADLLD 316
Query: 211 LKSSPKYVLRRVDFAMVVSNIA 232
+ Y+ RV+ A +A
Sbjct: 317 PERVANYMKLRVEVASAAEKLA 338
>sp|Q5H3X2|RSGA_XANOR Putative ribosome biogenesis GTPase RsgA OS=Xanthomonas oryzae pv.
oryzae (strain KACC10331 / KXO85) GN=rsgA PE=3 SV=1
Length = 363
Score = 35.8 bits (81), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 58/142 (40%), Gaps = 17/142 (11%)
Query: 100 TILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGF 159
T +L+G SG+GKS+L N + + S G HT T H + L SG
Sbjct: 205 TAVLVGSSGAGKSTLTNTLLGTEKMKTNGVRENDSRGR--HTTT-----HRALIPLPSGA 257
Query: 160 CVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKN---------DAEIDD 210
C+ D+ G + G E+L+ V R +DCA + +A++ D
Sbjct: 258 CLIDTPGMRELK-PTGEEDLAEGGFSDVEALAAQCRFNDCAHIAEPGCAVRAAIEADLLD 316
Query: 211 LKSSPKYVLRRVDFAMVVSNIA 232
+ Y+ RV+ A +A
Sbjct: 317 PERVANYMKLRVEVASAAEKLA 338
>sp|Q2P6S9|RSGA_XANOM Putative ribosome biogenesis GTPase RsgA OS=Xanthomonas oryzae pv.
oryzae (strain MAFF 311018) GN=rsgA PE=3 SV=1
Length = 363
Score = 35.8 bits (81), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 58/142 (40%), Gaps = 17/142 (11%)
Query: 100 TILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGF 159
T +L+G SG+GKS+L N + + S G HT T H + L SG
Sbjct: 205 TAVLVGSSGAGKSTLTNTLLGTEKMKTNGVRENDSRGR--HTTT-----HRALIPLPSGA 257
Query: 160 CVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKN---------DAEIDD 210
C+ D+ G + G E+L+ V R +DCA + +A++ D
Sbjct: 258 CLIDTPGMRELK-PTGEEDLAEGGFSDVEALAAQCRFNDCAHIAEPGCAVRAAIEADLLD 316
Query: 211 LKSSPKYVLRRVDFAMVVSNIA 232
+ Y+ RV+ A +A
Sbjct: 317 PERVANYMKLRVEVASAAEKLA 338
>sp|Q4FS42|MSBA_PSYA2 Lipid A export ATP-binding/permease protein MsbA OS=Psychrobacter
arcticus (strain DSM 17307 / 273-4) GN=msbA PE=3 SV=1
Length = 595
Score = 35.4 bits (80), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 22/98 (22%)
Query: 31 ECVKLKLDLP---NVSTLTPRLRVLREMERLALIAPDGLNELRHKFLSYRSGDFWIPIGG 87
E + LD P + L+P L +++ ++L+ PD L L R+G+
Sbjct: 332 ESIFALLDEPEEEDTGVLSPALVGEIKLDNISLVYPDSTVALHDFNLDIRAGE------- 384
Query: 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRS 125
T+ L+G SG+GKSSLVNL+ LS S
Sbjct: 385 ------------TVALVGRSGAGKSSLVNLLTRTLSTS 410
>sp|A6TM67|ENGB_ALKMQ Probable GTP-binding protein EngB OS=Alkaliphilus metalliredigens
(strain QYMF) GN=engB PE=3 SV=1
Length = 208
Score = 35.0 bits (79), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 15/82 (18%)
Query: 101 ILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFC 160
I L G S GKSSL+N ++L+R L +SS + T+ Y+ + F
Sbjct: 26 IALAGRSNVGKSSLIN---TILNRKKLARV--SSSPGKTRTLNFYL--------INKEFH 72
Query: 161 VYDSRGFNYNRVHEGLEELSSW 182
+ D G+ Y RV +G E SSW
Sbjct: 73 LVDLPGYGYARVSKG--EKSSW 92
>sp|Q1QBW0|MSBA_PSYCK Lipid A export ATP-binding/permease protein MsbA OS=Psychrobacter
cryohalolentis (strain K5) GN=msbA PE=3 SV=1
Length = 598
Score = 35.0 bits (79), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 22/98 (22%)
Query: 31 ECVKLKLDLP---NVSTLTPRLRVLREMERLALIAPDGLNELRHKFLSYRSGDFWIPIGG 87
E + LD P + L+P L +++ ++L+ PD L L R+G+
Sbjct: 335 ESIFALLDEPEEADTGVLSPTLAGEIKLDNVSLVYPDSTVALHDFNLDIRAGE------- 387
Query: 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRS 125
T+ L+G SG+GKSSLVNL+ L+ S
Sbjct: 388 ------------TVALVGRSGAGKSSLVNLLTRTLTTS 413
>sp|Q8TKG2|RSGA_METAC Putative ribosome biogenesis GTPase RsgA OS=Methanosarcina
acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 /
C2A) GN=rsgA PE=3 SV=1
Length = 369
Score = 35.0 bits (79), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 14/128 (10%)
Query: 78 SGDF-WIPIGGIQKGGMD-----IPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFA 131
+GD IP+ + K G+D + P T+ L+G SG GKS+L+N + +
Sbjct: 180 TGDVPVIPLSALSKTGLDALGPYLNPGETVALVGSSGVGKSTLINAFLGETVQKTADIRK 239
Query: 132 QTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQ 191
G HT T+ M L +G + D+ G ++ + E L SE V +
Sbjct: 240 DDEKGR--HTTTVRQ-----MFLLPNGAVLIDNPGIREIQLGDSAEGLEKAFSEIVDAAR 292
Query: 192 RCLRSDDC 199
C + DC
Sbjct: 293 NC-KFKDC 299
>sp|Q88WR0|URK_LACPL Uridine kinase OS=Lactobacillus plantarum (strain ATCC BAA-793 /
NCIMB 8826 / WCFS1) GN=udk PE=3 SV=1
Length = 209
Score = 35.0 bits (79), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 97 PVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNV 151
PV+ I + G SGSGK+++ N +Y+ LS L++ Q S N +TM E H V
Sbjct: 9 PVV-IGVTGGSGSGKTTVSNAIYNQLSGQSLLILQQDSYYNDQSEMTM-AERHAV 61
>sp|B1ZUH7|RSGA_OPITP Putative ribosome biogenesis GTPase RsgA OS=Opitutus terrae (strain
DSM 11246 / PB90-1) GN=rsgA PE=3 SV=1
Length = 367
Score = 34.7 bits (78), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 59/145 (40%), Gaps = 25/145 (17%)
Query: 97 PVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQ 156
P T+ L+G SG+GKS+L+N + + L + G HT T H + +L
Sbjct: 201 PGATVALLGSSGAGKSTLINRLLGKQRQDTGPLSHAMNKGR--HTTT-----HRELLALP 253
Query: 157 SGFCVYDSRGF--------NYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMK--NDA 206
G V D+ G + + V E E+++ +E + R CA+ +D
Sbjct: 254 GGALVIDTPGLRELQLWGVDESAVAETFPEVAALAAECRFPDCTHQREPGCAVRAALDDG 313
Query: 207 EID--------DLKSSPKYVLRRVD 223
+D L+ Y RRVD
Sbjct: 314 TLDPTRWASYEKLQREQAYAARRVD 338
>sp|Q3J7R8|MSBA_NITOC Lipid A export ATP-binding/permease protein MsbA OS=Nitrosococcus
oceani (strain ATCC 19707 / NCIMB 11848) GN=msbA PE=3
SV=1
Length = 597
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 9/44 (20%)
Query: 93 MDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSG 136
++I P TI L+G SGSGKS+LV+L L F +T+SG
Sbjct: 365 LEIKPYQTIALVGHSGSGKSTLVSL---------LARFYETTSG 399
>sp|Q71ZZ0|RSGA2_LISMF Putative ribosome biogenesis GTPase RsgA 2 OS=Listeria
monocytogenes serotype 4b (strain F2365) GN=rsgA2 PE=3
SV=1
Length = 346
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 11/82 (13%)
Query: 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLM--YSVLSRSGLVLFAQTSSGNSSHTITM 144
G + D+ P T++L+G SG GKSS +N + ++ +G+ + HT T
Sbjct: 172 GFEALERDLKPNSTLVLLGSSGVGKSSFINSLAGTDLMKTAGI----REDDSKGKHTTT- 226
Query: 145 YMEEHNVMRSLQSGFCVYDSRG 166
H M L +G+ V D+ G
Sbjct: 227 ----HREMHLLTNGWIVIDTPG 244
>sp|Q8Y7F0|RSGA1_LISMO Putative ribosome biogenesis GTPase RsgA 1 OS=Listeria
monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
GN=rsgA1 PE=3 SV=1
Length = 346
Score = 33.5 bits (75), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 11/82 (13%)
Query: 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLM--YSVLSRSGLVLFAQTSSGNSSHTITM 144
G + D+ P T++L+G SG GKSS +N + ++ +G+ + HT T
Sbjct: 172 GFEALESDLKPNSTLILLGSSGVGKSSFINSLAGTDLMKTAGI----REDDSKGKHTTT- 226
Query: 145 YMEEHNVMRSLQSGFCVYDSRG 166
H M L +G+ V D+ G
Sbjct: 227 ----HREMHLLSNGWIVIDTPG 244
>sp|Q8PN26|UVRA_XANAC UvrABC system protein A OS=Xanthomonas axonopodis pv. citri (strain
306) GN=uvrA PE=3 SV=1
Length = 987
Score = 33.5 bits (75), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Query: 93 MDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNV 151
+DIP + + G SGSGKS+L+N L A +SHT+ + E N+
Sbjct: 630 LDIPAGLLTCITGVSGSGKSTLIN--------DTLFTLAANEINGASHTVAPHREVENL 680
>sp|B2I7R5|RSGA_XYLF2 Putative ribosome biogenesis GTPase RsgA OS=Xylella fastidiosa
(strain M23) GN=rsgA PE=3 SV=1
Length = 332
Score = 33.5 bits (75), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Query: 97 PVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQ 156
P T+ L+G SG+GKS+L N + + V + HT T H + L
Sbjct: 193 PGRTVALLGSSGAGKSTLTNTLLG--EQRMKVGEVRQRDSRGRHTTT-----HRALLPLP 245
Query: 157 SGFCVYDSRGFN 168
SG C+ D+ G
Sbjct: 246 SGACLIDTPGMR 257
>sp|Q87B73|RSGA_XYLFT Putative ribosome biogenesis GTPase RsgA OS=Xylella fastidiosa
(strain Temecula1 / ATCC 700964) GN=rsgA PE=3 SV=1
Length = 341
Score = 33.5 bits (75), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Query: 97 PVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQ 156
P T+ L+G SG+GKS+L N + + V + HT T H + L
Sbjct: 202 PGRTVALLGSSGAGKSTLTNTLLG--EQRMKVGEVRQRDSRGRHTTT-----HRALLPLP 254
Query: 157 SGFCVYDSRGFN 168
SG C+ D+ G
Sbjct: 255 SGACLIDTPGMR 266
>sp|Q9PFV1|RSGA_XYLFA Putative ribosome biogenesis GTPase RsgA OS=Xylella fastidiosa
(strain 9a5c) GN=rsgA PE=3 SV=1
Length = 341
Score = 33.5 bits (75), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Query: 97 PVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQ 156
P T+ L+G SG+GKS+L N + + V + HT T H + L
Sbjct: 202 PGRTVALLGSSGAGKSTLTNTLLG--EQRMKVGEVRQRDSRGRHTTT-----HRALLPLP 254
Query: 157 SGFCVYDSRGFN 168
SG C+ D+ G
Sbjct: 255 SGACLIDTPGMR 266
>sp|B0U466|RSGA_XYLFM Putative ribosome biogenesis GTPase RsgA OS=Xylella fastidiosa
(strain M12) GN=rsgA PE=3 SV=1
Length = 332
Score = 33.5 bits (75), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Query: 97 PVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQ 156
P T+ L+G SG+GKS+L N + + V + HT T H + L
Sbjct: 193 PGRTVALLGSSGAGKSTLTNTLLG--EQRMKVGEVRQRDSRGRHTTT-----HRALLPLP 245
Query: 157 SGFCVYDSRGFN 168
SG C+ D+ G
Sbjct: 246 SGACLIDTPGMR 257
>sp|Q8IUA7|ABCA9_HUMAN ATP-binding cassette sub-family A member 9 OS=Homo sapiens GN=ABCA9
PE=1 SV=1
Length = 1624
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 8/74 (10%)
Query: 103 LMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVY 162
L+G SG+GK++L+N++ SGL + S +HT++ + N+ + +GFC
Sbjct: 515 LLGHSGAGKTTLLNIL------SGLSVPTSGSVTVYNHTLSRMADIENISKF--TGFCPQ 566
Query: 163 DSRGFNYNRVHEGL 176
+ F + V E L
Sbjct: 567 SNVQFGFLTVKENL 580
>sp|Q92C22|RSGA1_LISIN Putative ribosome biogenesis GTPase RsgA 1 OS=Listeria innocua
serovar 6a (strain CLIP 11262) GN=rsgA1 PE=3 SV=1
Length = 346
Score = 33.1 bits (74), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 11/82 (13%)
Query: 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNS--SHTITM 144
G + D+ P T++L+G SG GKSS +N L+ + L+ ++ +S HT T
Sbjct: 172 GFEALEADLKPNSTLVLLGSSGVGKSSFIN----SLAGADLMKTSEIREDDSKGKHTTT- 226
Query: 145 YMEEHNVMRSLQSGFCVYDSRG 166
H M L +G+ + D+ G
Sbjct: 227 ----HREMHLLANGWIIIDTPG 244
>sp|Q6F9X0|MSBA_ACIAD Lipid A export ATP-binding/permease protein MsbA OS=Acinetobacter
sp. (strain ADP1) GN=msbA PE=3 SV=1
Length = 574
Score = 33.1 bits (74), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 45/104 (43%), Gaps = 31/104 (29%)
Query: 37 LDLP---NVSTLTPRLRVLREMERLALIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGM 93
LDLP N T TP+L+ G H L Y + I+ +
Sbjct: 316 LDLPSEENHGTQTPKLQ--------------GDVRFDHVTLEYAG-----QVKAIKDFNL 356
Query: 94 DIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGN 137
I P T+ ++G SG+GK+SLVNL LV F + +SG+
Sbjct: 357 TIEPGETVAIVGRSGAGKTSLVNL---------LVRFQEVTSGS 391
>sp|Q8NXL9|UVRA_STAAW UvrABC system protein A OS=Staphylococcus aureus (strain MW2)
GN=uvrA PE=3 SV=1
Length = 948
Score = 32.7 bits (73), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Query: 93 MDIPPVITILLMGFSGSGKSSLVN-LMYSVLSR 124
+DIP I ++ G SGSGKSSLVN ++Y L++
Sbjct: 627 VDIPLSIMTVVTGVSGSGKSSLVNEVLYKSLAQ 659
>sp|Q6GB71|UVRA_STAAS UvrABC system protein A OS=Staphylococcus aureus (strain MSSA476)
GN=uvrA PE=3 SV=1
Length = 948
Score = 32.7 bits (73), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Query: 93 MDIPPVITILLMGFSGSGKSSLVN-LMYSVLSR 124
+DIP I ++ G SGSGKSSLVN ++Y L++
Sbjct: 627 VDIPLSIMTVVTGVSGSGKSSLVNEVLYKSLAQ 659
>sp|Q6GIN2|UVRA_STAAR UvrABC system protein A OS=Staphylococcus aureus (strain MRSA252)
GN=uvrA PE=3 SV=1
Length = 948
Score = 32.7 bits (73), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Query: 93 MDIPPVITILLMGFSGSGKSSLVN-LMYSVLSR 124
+DIP I ++ G SGSGKSSLVN ++Y L++
Sbjct: 627 VDIPLSIMTVVTGVSGSGKSSLVNEVLYKSLAQ 659
>sp|Q5HHQ9|UVRA_STAAC UvrABC system protein A OS=Staphylococcus aureus (strain COL)
GN=uvrA PE=3 SV=1
Length = 948
Score = 32.7 bits (73), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Query: 93 MDIPPVITILLMGFSGSGKSSLVN-LMYSVLSR 124
+DIP I ++ G SGSGKSSLVN ++Y L++
Sbjct: 627 VDIPLSIMTVVTGVSGSGKSSLVNEVLYKSLAQ 659
>sp|P63383|UVRA_STAAN UvrABC system protein A OS=Staphylococcus aureus (strain N315)
GN=uvrA PE=1 SV=1
Length = 948
Score = 32.7 bits (73), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Query: 93 MDIPPVITILLMGFSGSGKSSLVN-LMYSVLSR 124
+DIP I ++ G SGSGKSSLVN ++Y L++
Sbjct: 627 VDIPLSIMTVVTGVSGSGKSSLVNEVLYKSLAQ 659
>sp|P63382|UVRA_STAAM UvrABC system protein A OS=Staphylococcus aureus (strain Mu50 /
ATCC 700699) GN=uvrA PE=1 SV=1
Length = 948
Score = 32.7 bits (73), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Query: 93 MDIPPVITILLMGFSGSGKSSLVN-LMYSVLSR 124
+DIP I ++ G SGSGKSSLVN ++Y L++
Sbjct: 627 VDIPLSIMTVVTGVSGSGKSSLVNEVLYKSLAQ 659
>sp|A0LM36|MACB_SYNFM Macrolide export ATP-binding/permease protein MacB
OS=Syntrophobacter fumaroxidans (strain DSM 10017 /
MPOB) GN=macB PE=3 SV=1
Length = 715
Score = 32.7 bits (73), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLM 118
L EL+ +YR G+ +P+ ++ + + P + LMG SGSGK++L+N++
Sbjct: 3 LIELQDIRKTYRLGEIDVPV--LRGISLKVSPGDFVALMGTSGSGKTTLMNIL 53
>sp|Q60AA3|MSBA_METCA Lipid A export ATP-binding/permease protein MsbA OS=Methylococcus
capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath)
GN=msbA PE=3 SV=1
Length = 601
Score = 32.7 bits (73), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 45/105 (42%), Gaps = 19/105 (18%)
Query: 16 SGLVYCWWRSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLALIAPDGLNELRHKFLS 75
S +V R A D + LDLP R+ R++L G E RH L
Sbjct: 307 SQVVSVMQRGIAAGDSIFAM-LDLPRE----------RDRGRISLKRARGSIEYRHVSLV 355
Query: 76 Y--RSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLM 118
Y R G + + IP T+ L+G SGSGK+SLV L+
Sbjct: 356 YDDRHG------AAVDDVSLVIPAGKTVALVGQSGSGKTSLVRLL 394
>sp|P55469|Y4GM_RHISN Uncharacterized ABC transporter ATP-binding protein y4gM
OS=Rhizobium sp. (strain NGR234) GN=NGR_a03510 PE=3 SV=1
Length = 586
Score = 32.7 bits (73), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 7/62 (11%)
Query: 59 ALIAPDGLNELRHK--FLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVN 116
A+ P+G E+R K SY++G+ Q + P T L+G SG+GKSS++N
Sbjct: 336 AIPLPEGPGEIRFKDVNFSYKNGERLF-----QNLNVTFPAGKTTALVGPSGAGKSSIIN 390
Query: 117 LM 118
L+
Sbjct: 391 LI 392
>sp|Q983H5|NDVA_RHILO Beta-(1-->2)glucan export ATP-binding/permease protein NdvA
OS=Rhizobium loti (strain MAFF303099) GN=ndvA PE=3 SV=1
Length = 590
Score = 32.7 bits (73), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 9/99 (9%)
Query: 63 PDGLNELRHKFLSYRSGDFWIPIG----GIQKGGMDIPPVITILLMGFSGSGKSSLVNLM 118
PDGL +L + R D G+ ++ T+ ++G +G+GK++L+NL+
Sbjct: 322 PDGLRDLTNVTGHVRFEDVGFEFANSGQGVSGVSFEVQAGQTVAIVGPTGAGKTTLINLL 381
Query: 119 YSVLSRS-GLVLFAQTSSGNSSHTITMYMEEHNVMRSLQ 156
V S S G +L G + T+T H++ Q
Sbjct: 382 QRVFSPSTGRILI----DGIDTRTVTRKSLRHSIATVFQ 416
>sp|Q2SIN5|MSBA_HAHCH Lipid A export ATP-binding/permease protein MsbA OS=Hahella
chejuensis (strain KCTC 2396) GN=msbA PE=3 SV=1
Length = 585
Score = 32.7 bits (73), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 69 LRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLM 118
L K L + D P +Q+ + I P T+ L+G SGSGKS+LVNL+
Sbjct: 342 LEFKSLGFAYSDEGKP--ALQEINLVIEPGETVALVGRSGSGKSTLVNLL 389
>sp|P75523|RSGA_MYCPN Putative ribosome biogenesis GTPase RsgA OS=Mycoplasma pneumoniae
(strain ATCC 29342 / M129) GN=rsgA PE=3 SV=1
Length = 278
Score = 32.3 bits (72), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 9/67 (13%)
Query: 102 LLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCV 161
+ MG SG GKSSL+N + S + ++ L A N++ + M+ Q+GF +
Sbjct: 159 VFMGQSGVGKSSLINRLDSQIHQAIQALSAHQFGKNTTTSTVMF--------PFQNGF-I 209
Query: 162 YDSRGFN 168
D+ GFN
Sbjct: 210 CDTPGFN 216
>sp|Q8ETB7|RSGA1_OCEIH Putative ribosome biogenesis GTPase RsgA 1 OS=Oceanobacillus
iheyensis (strain DSM 14371 / JCM 11309 / KCTC 3954 /
HTE831) GN=rsgA1 PE=3 SV=1
Length = 351
Score = 32.3 bits (72), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 22/103 (21%)
Query: 89 QKGGMDIPPVI----TILLMGFSGSGKSSLVN-LMYSVLSRSGLVLFAQTSSGNSSHTIT 143
++G DI I +++L+G SG+GKS+L+N L+ + ++G V + HT T
Sbjct: 180 EEGKEDILANIHEDDSVVLIGSSGAGKSTLINALLTEKVLKTGSV---REDDKRGRHTTT 236
Query: 144 MYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG 186
H + +L +G + D+ G+ EL W +G
Sbjct: 237 -----HRELFNLPTGGVIIDT---------PGMRELQLWTEDG 265
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,632,583
Number of Sequences: 539616
Number of extensions: 4023296
Number of successful extensions: 16348
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 73
Number of HSP's that attempted gapping in prelim test: 16324
Number of HSP's gapped (non-prelim): 96
length of query: 273
length of database: 191,569,459
effective HSP length: 116
effective length of query: 157
effective length of database: 128,974,003
effective search space: 20248918471
effective search space used: 20248918471
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)