Query 024032
Match_columns 273
No_of_seqs 372 out of 3401
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 08:26:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024032.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024032hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1126 GlnQ ABC-type polar am 100.0 3.9E-49 8.5E-54 339.8 18.9 184 66-260 2-231 (240)
2 COG1120 FepC ABC-type cobalami 100.0 2.1E-47 4.6E-52 340.7 21.1 195 66-270 2-244 (258)
3 COG1125 OpuBA ABC-type proline 100.0 2.2E-46 4.8E-51 329.3 15.9 189 66-264 1-238 (309)
4 COG1135 AbcC ABC-type metal io 100.0 7.4E-46 1.6E-50 333.8 16.9 185 66-256 1-233 (339)
5 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 2.6E-44 5.7E-49 319.6 19.7 191 65-265 3-238 (254)
6 COG1127 Ttg2A ABC-type transpo 100.0 5.3E-44 1.1E-48 312.1 19.2 190 64-263 6-246 (263)
7 COG3638 ABC-type phosphate/pho 100.0 2.1E-44 4.6E-49 313.9 15.1 190 66-265 3-247 (258)
8 COG3839 MalK ABC-type sugar tr 100.0 2E-43 4.3E-48 326.0 19.2 183 66-258 3-227 (338)
9 COG2274 SunT ABC-type bacterio 100.0 1.8E-43 4E-48 354.5 20.3 219 28-257 425-699 (709)
10 COG3842 PotA ABC-type spermidi 100.0 1.2E-43 2.7E-48 328.9 17.1 184 65-258 4-230 (352)
11 KOG0058 Peptide exporter, ABC 100.0 3.3E-43 7.2E-48 344.6 18.3 216 30-256 422-693 (716)
12 COG1117 PstB ABC-type phosphat 100.0 6.7E-43 1.5E-47 300.5 14.6 183 65-260 6-243 (253)
13 COG1116 TauB ABC-type nitrate/ 100.0 3.5E-42 7.6E-47 303.1 18.8 168 66-243 3-211 (248)
14 COG0410 LivF ABC-type branched 100.0 2.5E-41 5.5E-46 294.0 19.6 187 66-262 3-234 (237)
15 COG1136 SalX ABC-type antimicr 100.0 1.4E-41 3E-46 298.0 17.9 173 66-244 1-221 (226)
16 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 3.2E-41 6.9E-46 340.0 23.2 219 28-256 407-675 (686)
17 PRK11174 cysteine/glutathione 100.0 3E-41 6.5E-46 334.4 22.5 216 29-256 304-574 (588)
18 COG1122 CbiO ABC-type cobalt t 100.0 1.8E-41 4E-46 300.7 18.1 183 66-256 3-230 (235)
19 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 2.5E-41 5.5E-46 341.8 21.4 219 28-256 425-702 (710)
20 TIGR02314 ABC_MetN D-methionin 100.0 3.4E-41 7.4E-46 314.4 20.5 183 66-256 1-232 (343)
21 COG1132 MdlB ABC-type multidru 100.0 3.9E-41 8.6E-46 332.5 20.7 216 29-256 285-554 (567)
22 COG1124 DppF ABC-type dipeptid 100.0 3.1E-41 6.7E-46 295.4 16.3 186 66-255 3-232 (252)
23 COG0411 LivG ABC-type branched 100.0 1.5E-41 3.3E-46 297.5 13.6 187 66-262 4-247 (250)
24 TIGR00958 3a01208 Conjugate Tr 100.0 1.1E-40 2.4E-45 337.4 21.1 221 28-257 433-705 (711)
25 PRK09536 btuD corrinoid ABC tr 100.0 3.7E-40 8E-45 313.0 23.2 192 66-268 3-242 (402)
26 COG2884 FtsE Predicted ATPase 100.0 4.4E-41 9.5E-46 284.6 15.0 173 66-248 1-220 (223)
27 TIGR03375 type_I_sec_LssB type 100.0 1.3E-40 2.9E-45 335.8 21.2 216 28-254 417-688 (694)
28 PRK11432 fbpC ferric transport 100.0 2.5E-40 5.4E-45 309.6 21.4 183 65-257 5-229 (351)
29 COG1137 YhbG ABC-type (unclass 100.0 6.4E-42 1.4E-46 291.9 9.4 186 66-262 4-236 (243)
30 PRK11650 ugpC glycerol-3-phosp 100.0 2.4E-40 5.1E-45 310.4 20.8 183 66-257 3-227 (356)
31 COG1118 CysA ABC-type sulfate/ 100.0 6.1E-41 1.3E-45 301.6 15.7 189 66-264 2-237 (345)
32 PRK11176 lipid transporter ATP 100.0 2.5E-40 5.4E-45 327.4 21.1 224 28-262 297-576 (582)
33 COG1131 CcmA ABC-type multidru 100.0 2.8E-40 6.1E-45 302.4 19.7 180 66-254 4-226 (293)
34 TIGR03265 PhnT2 putative 2-ami 100.0 3.3E-40 7.2E-45 309.1 20.5 182 66-257 4-227 (353)
35 COG3840 ThiQ ABC-type thiamine 100.0 1.8E-40 3.8E-45 279.5 16.5 179 67-257 2-222 (231)
36 TIGR01193 bacteriocin_ABC ABC- 100.0 4.1E-40 8.9E-45 332.9 21.4 219 28-256 427-699 (708)
37 PRK13537 nodulation ABC transp 100.0 9.4E-40 2E-44 300.6 21.7 181 63-254 4-227 (306)
38 COG4987 CydC ABC-type transpor 100.0 1.2E-40 2.7E-45 317.4 16.2 232 23-263 286-571 (573)
39 KOG0057 Mitochondrial Fe/S clu 100.0 6.4E-40 1.4E-44 312.8 20.4 188 63-260 348-580 (591)
40 PRK11160 cysteine/glutathione 100.0 8.4E-40 1.8E-44 323.8 21.9 218 29-257 294-565 (574)
41 cd03261 ABC_Org_Solvent_Resist 100.0 1.1E-39 2.5E-44 288.3 20.4 178 67-254 1-226 (235)
42 PRK10790 putative multidrug tr 100.0 1.1E-39 2.4E-44 323.6 22.4 216 28-255 297-564 (592)
43 PRK10851 sulfate/thiosulfate t 100.0 1.3E-39 2.8E-44 305.1 21.4 182 66-257 2-229 (353)
44 PRK09452 potA putrescine/sperm 100.0 1.4E-39 3.1E-44 306.8 21.5 184 64-257 12-237 (375)
45 KOG0055 Multidrug/pheromone ex 100.0 4.4E-40 9.5E-45 337.8 18.2 211 37-257 312-579 (1228)
46 COG4604 CeuD ABC-type enteroch 100.0 1.1E-40 2.3E-45 283.9 11.4 194 66-269 1-240 (252)
47 COG4559 ABC-type hemin transpo 100.0 6.3E-40 1.4E-44 281.9 16.1 193 66-269 1-245 (259)
48 cd03296 ABC_CysA_sulfate_impor 100.0 3.5E-39 7.7E-44 286.1 21.3 182 66-257 2-229 (239)
49 TIGR03258 PhnT 2-aminoethylpho 100.0 1.6E-39 3.4E-44 305.3 20.0 182 65-256 4-230 (362)
50 TIGR02315 ABC_phnC phosphonate 100.0 1.8E-39 4E-44 288.0 19.4 187 66-262 1-242 (243)
51 PRK11153 metN DL-methionine tr 100.0 2.8E-39 6.1E-44 301.8 20.9 182 66-255 1-231 (343)
52 PRK13634 cbiO cobalt transport 100.0 2.6E-39 5.6E-44 295.5 20.1 191 67-264 3-245 (290)
53 cd03218 ABC_YhbG The ABC trans 100.0 4.7E-39 1E-43 283.5 20.1 185 67-262 1-230 (232)
54 cd03256 ABC_PhnC_transporter A 100.0 3.9E-39 8.4E-44 285.3 19.6 184 67-260 1-239 (241)
55 PRK13643 cbiO cobalt transport 100.0 2.2E-39 4.9E-44 295.6 18.4 192 66-265 1-244 (288)
56 PRK13650 cbiO cobalt transport 100.0 6.4E-39 1.4E-43 291.3 21.1 187 66-259 4-234 (279)
57 PRK13637 cbiO cobalt transport 100.0 5.4E-39 1.2E-43 292.9 20.7 185 66-257 2-237 (287)
58 PRK11000 maltose/maltodextrin 100.0 4.7E-39 1E-43 303.0 20.9 181 66-256 3-225 (369)
59 PRK11607 potG putrescine trans 100.0 4.4E-39 9.6E-44 303.7 20.7 184 64-257 17-242 (377)
60 PRK13536 nodulation factor exp 100.0 7.8E-39 1.7E-43 298.4 22.1 180 64-254 39-261 (340)
61 PRK13651 cobalt transporter AT 100.0 2.3E-39 5E-44 298.0 18.2 191 66-264 2-264 (305)
62 TIGR01846 type_I_sec_HlyB type 100.0 4E-39 8.6E-44 325.2 21.2 218 28-256 410-682 (694)
63 PRK13646 cbiO cobalt transport 100.0 5.5E-39 1.2E-43 292.7 20.1 191 67-264 3-245 (286)
64 PRK13636 cbiO cobalt transport 100.0 8.3E-39 1.8E-43 291.1 20.6 193 65-265 4-242 (283)
65 cd03219 ABC_Mj1267_LivG_branch 100.0 6.8E-39 1.5E-43 283.2 19.3 179 67-256 1-234 (236)
66 TIGR00960 3a0501s02 Type II (G 100.0 4E-39 8.8E-44 281.2 17.6 169 66-243 1-216 (216)
67 PLN03232 ABC transporter C fam 100.0 3.8E-39 8.3E-44 346.9 21.1 215 33-256 1190-1460(1495)
68 cd03265 ABC_DrrA DrrA is the A 100.0 7.4E-39 1.6E-43 280.5 19.0 176 67-252 1-219 (220)
69 cd03259 ABC_Carb_Solutes_like 100.0 9.1E-39 2E-43 278.5 19.5 171 67-247 1-213 (213)
70 PRK13631 cbiO cobalt transport 100.0 1.5E-38 3.2E-43 294.4 21.8 193 64-264 19-275 (320)
71 TIGR02203 MsbA_lipidA lipid A 100.0 7E-39 1.5E-43 316.1 20.9 225 27-262 285-565 (571)
72 cd03258 ABC_MetN_methionine_tr 100.0 7.4E-39 1.6E-43 282.6 18.8 182 66-255 1-231 (233)
73 PRK10575 iron-hydroxamate tran 100.0 1.9E-38 4.2E-43 285.8 21.8 192 65-266 10-249 (265)
74 PLN03130 ABC transporter C fam 100.0 5.8E-39 1.3E-43 346.7 21.9 214 33-255 1193-1462(1622)
75 PRK10789 putative multidrug tr 100.0 9.5E-39 2.1E-43 315.9 21.5 216 30-256 271-540 (569)
76 cd03293 ABC_NrtD_SsuB_transpor 100.0 1E-38 2.3E-43 279.6 19.2 175 67-249 1-218 (220)
77 PRK11300 livG leucine/isoleuci 100.0 2.2E-38 4.7E-43 283.2 21.5 188 65-262 4-251 (255)
78 TIGR01842 type_I_sec_PrtD type 100.0 1.5E-38 3.2E-43 312.9 22.3 217 28-254 273-542 (544)
79 TIGR01288 nodI ATP-binding ABC 100.0 2.2E-38 4.8E-43 290.9 21.9 178 66-254 4-224 (303)
80 PRK11614 livF leucine/isoleuci 100.0 1.8E-38 3.9E-43 281.1 20.3 186 66-262 5-234 (237)
81 TIGR03411 urea_trans_UrtD urea 100.0 1.8E-38 4E-43 281.6 20.2 185 66-262 2-239 (242)
82 PRK10253 iron-enterobactin tra 100.0 2.8E-38 6.1E-43 284.8 21.7 193 64-266 5-245 (265)
83 KOG0055 Multidrug/pheromone ex 100.0 3E-39 6.5E-44 331.7 17.2 210 37-256 949-1215(1228)
84 PRK13638 cbiO cobalt transport 100.0 1.4E-38 3E-43 287.6 19.3 190 66-265 1-236 (271)
85 PRK13635 cbiO cobalt transport 100.0 3.6E-38 7.8E-43 286.4 22.1 186 65-257 4-232 (279)
86 TIGR00957 MRP_assoc_pro multi 100.0 1.2E-38 2.5E-43 343.6 22.0 218 30-256 1237-1510(1522)
87 PRK10895 lipopolysaccharide AB 100.0 3E-38 6.5E-43 280.3 20.7 186 66-262 3-234 (241)
88 COG4988 CydD ABC-type transpor 100.0 1.7E-38 3.6E-43 306.0 20.4 207 41-259 286-548 (559)
89 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 3.5E-38 7.5E-43 279.2 20.8 187 66-262 1-232 (236)
90 PRK15079 oligopeptide ABC tran 100.0 3.9E-38 8.4E-43 292.8 22.0 187 64-256 6-253 (331)
91 PRK13548 hmuV hemin importer A 100.0 4.8E-38 1E-42 282.3 21.9 191 66-266 2-242 (258)
92 PRK11231 fecE iron-dicitrate t 100.0 3.5E-38 7.5E-43 282.4 20.9 190 66-266 2-239 (255)
93 PRK09493 glnQ glutamine ABC tr 100.0 4.1E-38 8.8E-43 279.3 21.0 182 66-258 1-229 (240)
94 PRK13657 cyclic beta-1,2-gluca 100.0 3.4E-38 7.4E-43 312.8 22.8 213 33-255 293-559 (588)
95 PRK11831 putative ABC transpor 100.0 2.9E-38 6.3E-43 285.3 20.1 182 64-255 5-234 (269)
96 cd03224 ABC_TM1139_LivF_branch 100.0 3.7E-38 8.1E-43 275.8 20.1 177 67-254 1-221 (222)
97 cd03263 ABC_subfamily_A The AB 100.0 2.2E-38 4.8E-43 277.1 18.7 176 67-252 1-219 (220)
98 KOG0056 Heavy metal exporter H 100.0 4.9E-39 1.1E-43 303.0 15.5 206 38-255 501-762 (790)
99 PRK13632 cbiO cobalt transport 100.0 4.5E-38 9.8E-43 284.4 21.2 193 65-264 6-241 (271)
100 PRK14257 phosphate ABC transpo 100.0 2.9E-38 6.2E-43 293.4 20.3 186 64-260 78-319 (329)
101 TIGR03873 F420-0_ABC_ATP propo 100.0 4.8E-38 1E-42 281.6 21.0 189 67-266 2-238 (256)
102 PRK13639 cbiO cobalt transport 100.0 3.4E-38 7.3E-43 285.9 20.1 190 66-264 1-236 (275)
103 PRK11308 dppF dipeptide transp 100.0 4.7E-38 1E-42 291.8 21.5 186 65-256 4-246 (327)
104 PRK13547 hmuV hemin importer A 100.0 4.6E-38 1E-42 284.9 21.0 194 66-269 1-259 (272)
105 PRK11247 ssuB aliphatic sulfon 100.0 3.5E-38 7.6E-43 283.5 20.0 176 65-250 11-219 (257)
106 PRK13647 cbiO cobalt transport 100.0 5.6E-38 1.2E-42 284.4 21.3 178 66-252 4-225 (274)
107 cd03268 ABC_BcrA_bacitracin_re 100.0 4E-38 8.7E-43 273.5 19.5 170 67-247 1-208 (208)
108 PRK13640 cbiO cobalt transport 100.0 7.4E-38 1.6E-42 284.7 22.0 193 65-264 4-242 (282)
109 cd03301 ABC_MalK_N The N-termi 100.0 4.9E-38 1.1E-42 273.6 19.9 171 67-247 1-213 (213)
110 PTZ00265 multidrug resistance 100.0 2E-38 4.3E-43 339.9 20.9 216 30-254 1117-1452(1466)
111 PRK13633 cobalt transporter AT 100.0 5.3E-38 1.1E-42 285.3 20.6 187 65-258 3-237 (280)
112 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 2.8E-38 6E-43 276.2 17.9 169 67-243 1-218 (218)
113 PRK13644 cbiO cobalt transport 100.0 4.5E-38 9.8E-43 285.0 20.0 184 66-258 1-228 (274)
114 TIGR03005 ectoine_ehuA ectoine 100.0 6.6E-38 1.4E-42 280.0 20.7 181 67-257 1-239 (252)
115 PRK13648 cbiO cobalt transport 100.0 6.5E-38 1.4E-42 283.0 20.9 195 64-265 5-242 (269)
116 PRK10619 histidine/lysine/argi 100.0 5.4E-38 1.2E-42 281.5 20.2 183 63-256 2-243 (257)
117 PRK11264 putative amino-acid A 100.0 5.8E-38 1.3E-42 279.7 20.1 180 66-256 3-235 (250)
118 TIGR01186 proV glycine betaine 100.0 2.8E-38 6.2E-43 296.6 18.8 170 79-256 4-221 (363)
119 PRK14250 phosphate ABC transpo 100.0 1E-37 2.2E-42 277.4 21.3 180 66-256 3-223 (241)
120 PRK11629 lolD lipoprotein tran 100.0 8.3E-38 1.8E-42 276.3 20.7 175 66-248 5-228 (233)
121 TIGR03522 GldA_ABC_ATP gliding 100.0 6.2E-38 1.4E-42 287.7 20.6 177 66-254 2-221 (301)
122 PRK11022 dppD dipeptide transp 100.0 4.6E-38 1E-42 291.7 19.9 185 66-256 3-245 (326)
123 TIGR03410 urea_trans_UrtE urea 100.0 1.1E-37 2.5E-42 274.6 21.4 185 67-262 1-228 (230)
124 cd03226 ABC_cobalt_CbiO_domain 100.0 3.2E-38 7E-43 273.6 17.5 168 68-244 1-205 (205)
125 TIGR02204 MsbA_rel ABC transpo 100.0 4.4E-38 9.4E-43 310.9 20.7 217 28-255 290-564 (576)
126 PRK13641 cbiO cobalt transport 100.0 8.1E-38 1.8E-42 285.1 20.8 183 66-256 2-236 (287)
127 PRK13652 cbiO cobalt transport 100.0 7.5E-38 1.6E-42 283.9 20.4 185 66-258 3-231 (277)
128 COG4555 NatA ABC-type Na+ tran 100.0 8.6E-39 1.9E-43 273.0 13.0 188 66-263 1-234 (245)
129 PRK15093 antimicrobial peptide 100.0 8.8E-38 1.9E-42 290.3 20.9 185 66-256 3-250 (330)
130 cd03289 ABCC_CFTR2 The CFTR su 100.0 6.4E-38 1.4E-42 284.5 19.3 181 66-257 2-228 (275)
131 PRK09984 phosphonate/organopho 100.0 1.4E-37 3.1E-42 279.5 21.2 188 66-264 4-251 (262)
132 cd03266 ABC_NatA_sodium_export 100.0 6.9E-38 1.5E-42 273.6 18.4 173 66-247 1-218 (218)
133 PRK09473 oppD oligopeptide tra 100.0 1.2E-37 2.7E-42 289.3 21.2 187 64-256 10-253 (330)
134 cd03260 ABC_PstB_phosphate_tra 100.0 8.3E-38 1.8E-42 274.9 18.8 173 67-252 1-227 (227)
135 TIGR02769 nickel_nikE nickel i 100.0 1.2E-37 2.7E-42 280.6 20.4 183 66-254 2-240 (265)
136 PRK10771 thiQ thiamine transpo 100.0 1.8E-37 3.9E-42 274.0 21.0 185 66-262 1-227 (232)
137 cd03294 ABC_Pro_Gly_Bertaine T 100.0 5.8E-38 1.2E-42 283.5 18.2 179 68-256 26-252 (269)
138 PRK14273 phosphate ABC transpo 100.0 1.2E-37 2.6E-42 278.6 20.0 182 64-258 5-242 (254)
139 cd03295 ABC_OpuCA_Osmoprotecti 100.0 1.3E-37 2.7E-42 276.6 20.0 180 67-255 1-226 (242)
140 PRK10070 glycine betaine trans 100.0 9.3E-38 2E-42 296.4 20.1 166 87-256 43-256 (400)
141 PTZ00243 ABC transporter; Prov 100.0 8.6E-38 1.9E-42 336.9 22.1 216 31-255 1235-1534(1560)
142 PRK11248 tauB taurine transpor 100.0 1.7E-37 3.8E-42 278.5 20.5 174 66-249 1-215 (255)
143 cd03269 ABC_putative_ATPase Th 100.0 1.2E-37 2.6E-42 270.8 18.4 170 67-247 1-210 (210)
144 PRK13645 cbiO cobalt transport 100.0 2.5E-37 5.4E-42 282.0 21.3 193 65-264 5-250 (289)
145 TIGR01188 drrA daunorubicin re 100.0 5E-38 1.1E-42 288.4 16.8 167 79-254 4-213 (302)
146 TIGR02211 LolD_lipo_ex lipopro 100.0 1.6E-37 3.4E-42 271.9 19.1 171 66-244 1-220 (221)
147 PRK14242 phosphate transporter 100.0 1.9E-37 4E-42 277.0 19.8 184 64-260 4-243 (253)
148 TIGR01192 chvA glucan exporter 100.0 2.1E-37 4.7E-42 307.3 22.3 216 29-256 289-560 (585)
149 TIGR02673 FtsE cell division A 100.0 1E-37 2.2E-42 271.8 17.6 167 66-242 1-214 (214)
150 PRK14267 phosphate ABC transpo 100.0 2.1E-37 4.5E-42 276.7 20.0 179 66-256 4-239 (253)
151 PRK13649 cbiO cobalt transport 100.0 3.3E-37 7.2E-42 279.7 21.5 183 67-257 3-237 (280)
152 TIGR03740 galliderm_ABC gallid 100.0 5E-37 1.1E-41 269.4 21.8 182 67-262 1-218 (223)
153 COG0444 DppD ABC-type dipeptid 100.0 1.6E-37 3.4E-42 282.1 19.1 189 66-258 1-247 (316)
154 cd03252 ABCC_Hemolysin The ABC 100.0 2.3E-37 5E-42 273.8 19.6 179 67-256 1-227 (237)
155 COG4152 ABC-type uncharacteriz 100.0 1.6E-38 3.5E-43 278.2 12.0 178 66-254 2-219 (300)
156 PRK15112 antimicrobial peptide 100.0 2.3E-37 4.9E-42 279.3 19.9 186 65-256 3-241 (267)
157 PRK10744 pstB phosphate transp 100.0 3.3E-37 7.2E-42 276.9 20.9 183 63-258 10-248 (260)
158 PRK11124 artP arginine transpo 100.0 2.1E-37 4.7E-42 274.9 19.3 177 66-253 2-229 (242)
159 PRK13642 cbiO cobalt transport 100.0 6E-37 1.3E-41 278.0 22.5 185 66-257 4-232 (277)
160 PRK11144 modC molybdate transp 100.0 2.4E-37 5.1E-42 289.8 20.0 179 67-258 2-222 (352)
161 PRK10584 putative ABC transpor 100.0 4.2E-37 9E-42 270.6 20.3 174 65-246 5-227 (228)
162 cd03235 ABC_Metallic_Cations A 100.0 9.1E-38 2E-42 272.1 15.5 169 68-246 1-212 (213)
163 TIGR00972 3a0107s01c2 phosphat 100.0 4.5E-37 9.7E-42 273.8 20.3 178 66-256 1-234 (247)
164 PRK10908 cell division protein 100.0 3.1E-37 6.6E-42 270.6 18.9 169 67-245 2-217 (222)
165 cd03292 ABC_FtsE_transporter F 100.0 2.1E-37 4.5E-42 269.6 17.5 167 67-243 1-214 (214)
166 PRK14247 phosphate ABC transpo 100.0 6.4E-37 1.4E-41 273.1 20.6 179 66-256 3-236 (250)
167 cd03264 ABC_drug_resistance_li 100.0 3.1E-37 6.8E-42 268.4 18.1 168 67-247 1-211 (211)
168 PRK11701 phnK phosphonate C-P 100.0 6.8E-37 1.5E-41 274.5 20.2 184 65-256 5-243 (258)
169 COG4175 ProV ABC-type proline/ 100.0 6.2E-38 1.3E-42 283.0 13.3 167 87-257 43-257 (386)
170 PRK14256 phosphate ABC transpo 100.0 9.5E-37 2.1E-41 272.5 20.9 184 64-259 2-241 (252)
171 cd03257 ABC_NikE_OppD_transpor 100.0 8.4E-37 1.8E-41 268.1 20.2 176 66-247 1-228 (228)
172 PRK14268 phosphate ABC transpo 100.0 7.8E-37 1.7E-41 274.2 20.4 180 65-257 11-245 (258)
173 cd03225 ABC_cobalt_CbiO_domain 100.0 3.4E-37 7.3E-42 268.0 17.4 167 68-242 1-211 (211)
174 TIGR01271 CFTR_protein cystic 100.0 6.2E-37 1.3E-41 329.7 23.2 213 34-255 1160-1441(1490)
175 TIGR01978 sufC FeS assembly AT 100.0 8.2E-37 1.8E-41 270.8 19.9 176 67-253 1-233 (243)
176 TIGR00968 3a0106s01 sulfate AB 100.0 1.1E-36 2.3E-41 270.2 20.1 186 67-262 1-228 (237)
177 cd03262 ABC_HisP_GlnQ_permease 100.0 4.5E-37 9.8E-42 267.4 17.4 166 67-243 1-213 (213)
178 PRK14274 phosphate ABC transpo 100.0 1.1E-36 2.5E-41 273.2 20.5 183 64-259 10-248 (259)
179 PRK14269 phosphate ABC transpo 100.0 1E-36 2.2E-41 271.6 19.9 178 66-256 2-232 (246)
180 PRK14249 phosphate ABC transpo 100.0 1.5E-36 3.2E-41 271.1 20.8 185 65-262 3-243 (251)
181 PRK14245 phosphate ABC transpo 100.0 1.4E-36 3.1E-41 271.1 20.5 181 66-259 3-239 (250)
182 PRK14239 phosphate transporter 100.0 1.4E-36 2.9E-41 271.1 20.3 180 66-258 5-240 (252)
183 cd03298 ABC_ThiQ_thiamine_tran 100.0 1E-36 2.2E-41 265.2 19.0 169 67-247 1-211 (211)
184 PRK15056 manganese/iron transp 100.0 1.5E-36 3.3E-41 274.6 20.8 191 65-264 5-240 (272)
185 PRK09544 znuC high-affinity zi 100.0 2.3E-36 5.1E-41 270.7 21.5 185 66-265 4-220 (251)
186 PRK14248 phosphate ABC transpo 100.0 1.7E-36 3.8E-41 273.4 20.9 182 64-258 19-256 (268)
187 cd03251 ABCC_MsbA MsbA is an e 100.0 1.1E-36 2.4E-41 268.7 19.1 181 67-258 1-229 (234)
188 PRK15439 autoinducer 2 ABC tra 100.0 1.8E-36 4E-41 296.2 22.3 183 65-258 10-233 (510)
189 PRK14240 phosphate transporter 100.0 2E-36 4.2E-41 270.0 20.5 180 65-257 2-237 (250)
190 PRK09700 D-allose transporter 100.0 1.4E-36 3E-41 296.8 21.3 186 65-261 4-241 (510)
191 PRK14235 phosphate transporter 100.0 1.9E-36 4.1E-41 273.2 20.5 181 63-256 16-253 (267)
192 TIGR01277 thiQ thiamine ABC tr 100.0 1.7E-36 3.7E-41 264.5 19.4 170 67-248 1-212 (213)
193 TIGR02142 modC_ABC molybdenum 100.0 1.2E-36 2.6E-41 285.1 19.7 177 71-259 4-226 (354)
194 PRK10522 multidrug transporter 100.0 2.5E-36 5.4E-41 297.3 22.8 209 28-246 278-530 (547)
195 PRK14258 phosphate ABC transpo 100.0 2E-36 4.3E-41 272.2 20.0 187 65-262 6-253 (261)
196 COG4598 HisP ABC-type histidin 100.0 1.3E-37 2.8E-42 262.0 11.0 184 65-259 5-246 (256)
197 PRK14270 phosphate ABC transpo 100.0 3.1E-36 6.8E-41 269.0 20.6 181 65-258 3-239 (251)
198 PRK10762 D-ribose transporter 100.0 1.9E-36 4.2E-41 295.3 20.9 178 66-254 4-230 (501)
199 cd03300 ABC_PotA_N PotA is an 100.0 2.6E-36 5.6E-41 266.7 19.8 180 67-256 1-222 (232)
200 COG1123 ATPase components of v 100.0 9.6E-37 2.1E-41 294.4 18.3 192 64-257 278-522 (539)
201 PRK13549 xylose transporter AT 100.0 2.2E-36 4.7E-41 295.2 21.0 184 65-259 4-237 (506)
202 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 2.3E-36 5E-41 267.5 19.2 179 67-256 1-228 (238)
203 PRK14237 phosphate transporter 100.0 4.5E-36 9.8E-41 270.8 21.3 183 63-258 17-255 (267)
204 COG1123 ATPase components of v 100.0 1.5E-36 3.2E-41 293.1 19.1 189 65-257 4-247 (539)
205 TIGR02868 CydC thiol reductant 100.0 9.5E-37 2.1E-41 298.8 18.2 193 29-231 287-527 (529)
206 PRK14251 phosphate ABC transpo 100.0 5.1E-36 1.1E-40 267.5 21.2 179 66-257 4-238 (251)
207 PRK14259 phosphate ABC transpo 100.0 3.1E-36 6.8E-41 272.2 20.0 180 64-256 11-255 (269)
208 TIGR02323 CP_lyasePhnK phospho 100.0 3.4E-36 7.3E-41 268.9 19.9 183 66-256 3-240 (253)
209 PRK14262 phosphate ABC transpo 100.0 4.2E-36 9.2E-41 267.8 20.4 178 66-256 3-236 (250)
210 PRK14272 phosphate ABC transpo 100.0 4E-36 8.7E-41 268.1 19.9 179 66-256 4-238 (252)
211 PRK14241 phosphate transporter 100.0 4E-36 8.7E-41 269.5 19.7 179 66-256 4-244 (258)
212 PRK10247 putative ABC transpor 100.0 2.2E-36 4.7E-41 266.2 17.5 175 65-250 6-223 (225)
213 PRK14253 phosphate ABC transpo 100.0 4E-36 8.6E-41 267.9 19.4 181 66-259 3-238 (249)
214 PRK10418 nikD nickel transport 100.0 6.7E-36 1.5E-40 267.6 20.9 181 66-256 4-232 (254)
215 cd03244 ABCC_MRP_domain2 Domai 100.0 4E-36 8.6E-41 263.0 18.9 172 66-248 2-220 (221)
216 PRK14261 phosphate ABC transpo 100.0 9.9E-36 2.1E-40 266.1 21.9 179 65-256 5-239 (253)
217 PRK14236 phosphate transporter 100.0 7.1E-36 1.5E-40 270.2 21.1 183 64-259 23-261 (272)
218 PRK14255 phosphate ABC transpo 100.0 6.7E-36 1.5E-40 266.9 20.7 181 65-258 4-240 (252)
219 TIGR02857 CydD thiol reductant 100.0 2.1E-36 4.6E-41 296.4 19.0 199 29-238 277-529 (529)
220 cd03254 ABCC_Glucan_exporter_l 100.0 4.1E-36 8.9E-41 264.3 18.7 177 66-254 2-226 (229)
221 PRK03695 vitamin B12-transport 100.0 4.4E-36 9.5E-41 268.2 19.0 185 68-267 2-235 (248)
222 TIGR03415 ABC_choXWV_ATP choli 100.0 2.6E-36 5.6E-41 284.9 18.3 170 79-256 35-256 (382)
223 PRK10419 nikE nickel transport 100.0 5.9E-36 1.3E-40 270.3 19.9 183 66-254 3-241 (268)
224 cd03299 ABC_ModC_like Archeal 100.0 8E-36 1.7E-40 264.2 20.1 179 67-256 1-221 (235)
225 cd03246 ABCC_Protease_Secretio 100.0 3.4E-36 7.4E-41 254.9 17.0 150 67-243 1-173 (173)
226 PRK10261 glutathione transport 100.0 4.9E-36 1.1E-40 299.5 21.0 186 65-256 312-555 (623)
227 PRK14244 phosphate ABC transpo 100.0 5.8E-36 1.3E-40 267.3 19.3 180 67-259 6-242 (251)
228 cd03233 ABC_PDR_domain1 The pl 100.0 3.6E-36 7.8E-41 261.0 17.4 171 66-247 3-202 (202)
229 cd03369 ABCC_NFT1 Domain 2 of 100.0 7.1E-36 1.5E-40 259.3 18.9 173 65-249 5-207 (207)
230 PRK14265 phosphate ABC transpo 100.0 7.7E-36 1.7E-40 270.4 19.8 182 64-258 18-262 (274)
231 cd03247 ABCC_cytochrome_bd The 100.0 3.3E-36 7.3E-41 255.9 16.3 156 67-247 1-178 (178)
232 TIGR01194 cyc_pep_trnsptr cycl 100.0 7.1E-36 1.5E-40 294.7 21.1 210 28-246 283-551 (555)
233 PRK14238 phosphate transporter 100.0 1.5E-35 3.2E-40 268.1 21.3 180 65-257 23-258 (271)
234 cd03253 ABCC_ATM1_transporter 100.0 1E-35 2.3E-40 262.8 19.6 178 67-256 1-226 (236)
235 PRK14243 phosphate transporter 100.0 9E-36 1.9E-40 268.4 19.5 179 66-257 10-251 (264)
236 cd03245 ABCC_bacteriocin_expor 100.0 7.6E-36 1.7E-40 261.1 18.4 171 66-247 2-220 (220)
237 cd03288 ABCC_SUR2 The SUR doma 100.0 1.3E-35 2.8E-40 266.3 20.3 181 64-255 17-244 (257)
238 cd03229 ABC_Class3 This class 100.0 1.1E-35 2.4E-40 252.8 18.8 152 67-242 1-178 (178)
239 PRK14275 phosphate ABC transpo 100.0 1.5E-35 3.2E-40 270.2 20.8 180 64-256 37-272 (286)
240 PRK15134 microcin C ABC transp 100.0 4E-36 8.7E-41 294.8 18.2 187 65-257 274-518 (529)
241 cd03230 ABC_DR_subfamily_A Thi 100.0 9.6E-36 2.1E-40 252.1 17.6 150 67-243 1-173 (173)
242 PRK14260 phosphate ABC transpo 100.0 1.5E-35 3.1E-40 266.1 19.4 179 66-257 7-246 (259)
243 PRK14254 phosphate ABC transpo 100.0 2.2E-35 4.7E-40 269.1 20.6 180 64-256 37-271 (285)
244 cd03213 ABCG_EPDR ABCG transpo 100.0 9.9E-36 2.2E-40 256.7 17.2 164 66-247 3-194 (194)
245 PRK10982 galactose/methyl gala 100.0 1.2E-35 2.5E-40 289.0 19.5 174 69-253 1-222 (491)
246 PRK10938 putative molybdenum t 100.0 1.6E-35 3.4E-40 288.0 20.1 187 66-259 3-229 (490)
247 TIGR02982 heterocyst_DevA ABC 100.0 1.8E-35 4E-40 259.2 18.1 169 67-243 2-219 (220)
248 TIGR02633 xylG D-xylose ABC tr 100.0 1.9E-35 4.1E-40 288.1 20.0 177 66-253 1-229 (500)
249 PRK10261 glutathione transport 100.0 1.6E-35 3.6E-40 295.7 20.1 186 64-255 10-259 (623)
250 cd03217 ABC_FeS_Assembly ABC-t 100.0 3.2E-35 6.9E-40 254.5 19.2 162 67-250 1-190 (200)
251 cd03232 ABC_PDR_domain2 The pl 100.0 1.6E-35 3.6E-40 254.8 17.2 164 66-247 3-192 (192)
252 cd03297 ABC_ModC_molybdenum_tr 100.0 1.5E-35 3.3E-40 258.5 17.2 164 71-247 5-214 (214)
253 TIGR01184 ntrCD nitrate transp 100.0 9E-36 2E-40 263.2 16.0 161 88-252 1-202 (230)
254 cd03267 ABC_NatA_like Similar 100.0 2.5E-35 5.5E-40 261.3 18.7 164 77-247 30-236 (236)
255 COG4618 ArpD ABC-type protease 100.0 8E-36 1.7E-40 282.6 16.4 207 38-254 301-560 (580)
256 PRK14271 phosphate ABC transpo 100.0 6.2E-35 1.4E-39 264.8 21.6 181 64-257 19-254 (276)
257 PRK14263 phosphate ABC transpo 100.0 6.8E-35 1.5E-39 262.5 21.2 179 65-256 7-247 (261)
258 PRK15134 microcin C ABC transp 100.0 3.3E-35 7.2E-40 288.3 20.5 185 65-255 4-247 (529)
259 PRK11288 araG L-arabinose tran 100.0 4.3E-35 9.3E-40 285.8 21.0 173 66-249 4-224 (501)
260 PRK14252 phosphate ABC transpo 100.0 6.8E-35 1.5E-39 262.6 20.5 180 64-256 14-251 (265)
261 PTZ00265 multidrug resistance 100.0 1.9E-35 4.1E-40 317.0 19.8 198 35-241 344-655 (1466)
262 cd03215 ABC_Carb_Monos_II This 100.0 2.4E-35 5.2E-40 251.7 16.4 154 66-243 4-182 (182)
263 cd03234 ABCG_White The White s 100.0 3.5E-35 7.6E-40 258.4 17.8 173 66-247 3-226 (226)
264 PRK14266 phosphate ABC transpo 100.0 6.8E-35 1.5E-39 260.1 19.7 178 66-256 3-236 (250)
265 CHL00131 ycf16 sulfate ABC tra 100.0 1.4E-34 3.1E-39 258.1 20.7 175 66-251 7-238 (252)
266 TIGR03608 L_ocin_972_ABC putat 100.0 3.2E-35 7E-40 254.5 15.6 159 69-238 1-206 (206)
267 PRK14246 phosphate ABC transpo 100.0 1E-34 2.2E-39 260.9 19.0 187 64-262 8-251 (257)
268 cd03216 ABC_Carb_Monos_I This 100.0 2.2E-34 4.8E-39 241.9 19.2 137 67-245 1-162 (163)
269 TIGR03269 met_CoM_red_A2 methy 100.0 6.2E-35 1.3E-39 285.8 18.2 178 67-254 1-258 (520)
270 PRK09580 sufC cysteine desulfu 100.0 2.1E-34 4.6E-39 256.2 20.0 180 66-252 1-233 (248)
271 TIGR03269 met_CoM_red_A2 methy 100.0 5.4E-35 1.2E-39 286.2 17.4 183 64-254 277-517 (520)
272 PRK14264 phosphate ABC transpo 100.0 2.2E-34 4.7E-39 264.8 20.3 180 64-256 43-291 (305)
273 PRK13549 xylose transporter AT 100.0 5.9E-35 1.3E-39 285.1 17.2 183 65-253 258-493 (506)
274 TIGR02770 nickel_nikD nickel i 100.0 1.3E-34 2.8E-39 255.6 17.3 166 88-256 2-217 (230)
275 cd03228 ABCC_MRP_Like The MRP 100.0 9.3E-35 2E-39 245.7 15.7 148 67-242 1-171 (171)
276 cd03231 ABC_CcmA_heme_exporter 100.0 2.9E-34 6.3E-39 248.6 18.5 161 67-238 1-198 (201)
277 COG4181 Predicted ABC-type tra 100.0 8.8E-35 1.9E-39 243.0 14.0 176 65-246 5-227 (228)
278 cd03214 ABC_Iron-Siderophores_ 100.0 1.5E-34 3.2E-39 246.3 15.7 155 68-246 1-179 (180)
279 PRK13538 cytochrome c biogenes 100.0 4.6E-34 9.9E-39 247.8 19.0 153 66-229 1-185 (204)
280 COG1129 MglA ABC-type sugar tr 100.0 1.8E-34 3.9E-39 276.9 17.7 178 64-252 6-233 (500)
281 COG4148 ModC ABC-type molybdat 100.0 1.2E-34 2.6E-39 258.0 14.4 178 72-259 4-223 (352)
282 PRK13543 cytochrome c biogenes 100.0 6.3E-34 1.4E-38 248.8 18.8 166 64-240 9-212 (214)
283 cd03250 ABCC_MRP_domain1 Domai 100.0 5.6E-34 1.2E-38 246.9 18.3 158 67-242 1-204 (204)
284 COG4608 AppF ABC-type oligopep 100.0 2.7E-34 5.8E-39 256.0 16.3 168 65-257 3-202 (268)
285 TIGR03771 anch_rpt_ABC anchore 100.0 3E-34 6.4E-39 252.4 16.4 168 93-264 1-211 (223)
286 cd03248 ABCC_TAP TAP, the Tran 100.0 3.4E-34 7.3E-39 251.8 16.8 169 64-243 9-226 (226)
287 COG5265 ATM1 ABC-type transpor 100.0 7.9E-35 1.7E-39 270.9 13.0 184 64-259 260-491 (497)
288 COG3845 ABC-type uncharacteriz 100.0 4E-34 8.7E-39 270.7 18.0 173 65-248 3-223 (501)
289 cd03223 ABCD_peroxisomal_ALDP 100.0 4.8E-34 1E-38 240.6 16.6 150 67-242 1-164 (166)
290 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 5.2E-34 1.1E-38 251.2 17.2 163 67-247 23-224 (224)
291 PRK09700 D-allose transporter 100.0 3.5E-34 7.7E-39 279.8 17.6 176 65-253 264-497 (510)
292 PRK15064 ABC transporter ATP-b 100.0 8.2E-34 1.8E-38 278.5 19.8 172 66-253 1-241 (530)
293 TIGR01189 ccmA heme ABC export 100.0 1.5E-33 3.3E-38 243.3 18.9 154 67-231 1-185 (198)
294 KOG0054 Multidrug resistance-a 100.0 7.1E-34 1.5E-38 297.4 20.2 217 31-256 1092-1364(1381)
295 PRK13539 cytochrome c biogenes 100.0 1.7E-33 3.7E-38 244.8 18.9 153 66-229 2-183 (207)
296 COG4172 ABC-type uncharacteriz 100.0 5.8E-34 1.3E-38 264.0 16.8 192 64-257 274-519 (534)
297 PRK13540 cytochrome c biogenes 100.0 1.1E-33 2.4E-38 244.6 17.5 154 67-231 2-185 (200)
298 PLN03232 ABC transporter C fam 100.0 1.2E-33 2.6E-38 304.6 21.8 211 29-255 571-829 (1495)
299 PRK13546 teichoic acids export 100.0 2.9E-33 6.2E-38 252.6 20.8 176 66-254 4-232 (264)
300 TIGR01257 rim_protein retinal- 100.0 1.8E-33 3.8E-38 305.1 21.3 181 64-253 1935-2158(2272)
301 PRK10762 D-ribose transporter 100.0 9.1E-34 2E-38 276.5 16.8 177 65-254 256-484 (501)
302 PLN03130 ABC transporter C fam 100.0 2.6E-33 5.7E-38 302.9 22.0 209 30-255 572-829 (1622)
303 COG4161 ArtP ABC-type arginine 100.0 4.5E-34 9.7E-39 237.1 12.4 182 66-259 2-234 (242)
304 TIGR02633 xylG D-xylose ABC tr 100.0 9.7E-34 2.1E-38 276.1 16.7 181 65-251 256-489 (500)
305 PRK15064 ABC transporter ATP-b 100.0 2.6E-33 5.7E-38 275.0 19.7 177 65-255 318-526 (530)
306 TIGR02324 CP_lyasePhnL phospho 100.0 2.4E-33 5.2E-38 246.1 17.3 164 66-238 1-222 (224)
307 COG4619 ABC-type uncharacteriz 100.0 2.4E-34 5.3E-39 239.7 10.1 160 75-243 10-212 (223)
308 cd03291 ABCC_CFTR1 The CFTR su 100.0 1.7E-32 3.8E-37 249.8 22.6 169 64-254 37-247 (282)
309 PRK11819 putative ABC transpor 100.0 2.9E-33 6.3E-38 276.2 18.8 174 65-253 5-249 (556)
310 cd03290 ABCC_SUR1_N The SUR do 100.0 5.3E-33 1.1E-37 243.1 18.3 164 68-242 2-218 (218)
311 PRK15439 autoinducer 2 ABC tra 100.0 1.3E-33 2.8E-38 276.0 15.7 187 65-264 267-502 (510)
312 TIGR01257 rim_protein retinal- 100.0 2.8E-33 6.2E-38 303.4 19.6 179 65-253 927-1148(2272)
313 COG4525 TauB ABC-type taurine 100.0 2.1E-33 4.6E-38 239.1 14.6 175 66-248 3-218 (259)
314 PRK11288 araG L-arabinose tran 100.0 2.3E-33 5E-38 273.6 17.1 176 66-253 257-484 (501)
315 COG4674 Uncharacterized ABC-ty 100.0 6.5E-34 1.4E-38 242.1 11.2 186 65-262 4-243 (249)
316 PLN03211 ABC transporter G-25; 100.0 1.5E-33 3.2E-38 282.8 15.2 174 69-253 71-295 (659)
317 TIGR01166 cbiO cobalt transpor 100.0 3.4E-33 7.4E-38 239.4 14.4 140 88-231 8-185 (190)
318 TIGR00954 3a01203 Peroxysomal 100.0 1.8E-32 4E-37 275.3 21.1 198 27-240 381-653 (659)
319 COG4172 ABC-type uncharacteriz 100.0 6.5E-33 1.4E-37 257.1 15.7 190 64-257 4-250 (534)
320 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.3E-32 2.8E-37 271.4 18.4 173 66-253 4-247 (552)
321 TIGR00957 MRP_assoc_pro multi 100.0 4.7E-32 1E-36 292.6 23.0 209 29-254 590-850 (1522)
322 PRK10535 macrolide transporter 100.0 3.3E-32 7.2E-37 273.0 20.0 179 66-253 4-231 (648)
323 PRK10938 putative molybdenum t 100.0 2.3E-32 5.1E-37 265.7 17.5 176 65-248 259-486 (490)
324 PRK13541 cytochrome c biogenes 100.0 4.1E-32 8.8E-37 234.0 17.0 153 67-231 2-181 (195)
325 PRK10982 galactose/methyl gala 100.0 1.2E-32 2.6E-37 267.9 15.3 178 65-252 249-478 (491)
326 PRK13545 tagH teichoic acids e 100.0 8.2E-32 1.8E-36 261.0 20.7 174 65-255 20-233 (549)
327 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 8.1E-32 1.8E-36 222.2 17.4 129 67-242 1-144 (144)
328 PRK10636 putative ABC transpor 100.0 1.2E-31 2.5E-36 268.7 20.1 175 65-253 311-516 (638)
329 PRK11819 putative ABC transpor 100.0 2.6E-31 5.6E-36 262.4 20.1 176 65-255 323-534 (556)
330 TIGR01187 potA spermidine/putr 100.0 6.5E-32 1.4E-36 250.5 14.6 150 103-256 1-192 (325)
331 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 2.3E-31 5E-36 262.5 19.1 174 65-253 321-530 (552)
332 PRK11147 ABC transporter ATPas 100.0 2.2E-31 4.8E-36 266.6 19.3 173 65-252 318-526 (635)
333 COG1101 PhnK ABC-type uncharac 100.0 5.1E-32 1.1E-36 233.6 12.1 194 67-263 2-249 (263)
334 cd03237 ABC_RNaseL_inhibitor_d 100.0 2.2E-31 4.9E-36 238.0 16.4 154 88-252 10-205 (246)
335 COG4586 ABC-type uncharacteriz 100.0 8.8E-32 1.9E-36 239.0 13.0 165 86-253 38-245 (325)
336 COG4167 SapF ABC-type antimicr 100.0 1E-31 2.3E-36 226.9 12.4 190 65-257 3-242 (267)
337 COG0396 sufC Cysteine desulfur 100.0 5.2E-31 1.1E-35 229.3 16.3 177 66-253 3-232 (251)
338 PRK10636 putative ABC transpor 100.0 7.9E-31 1.7E-35 262.7 19.7 176 66-253 1-235 (638)
339 TIGR00956 3a01205 Pleiotropic 100.0 4E-31 8.7E-36 283.1 18.6 177 66-251 759-990 (1394)
340 TIGR01271 CFTR_protein cystic 100.0 1.1E-30 2.3E-35 281.6 21.8 205 31-254 354-636 (1490)
341 TIGR00955 3a01204 The Eye Pigm 100.0 1.5E-31 3.4E-36 266.9 14.2 165 80-253 37-255 (617)
342 COG1119 ModF ABC-type molybden 100.0 4.1E-31 9E-36 232.0 15.1 178 63-248 28-256 (257)
343 PRK13409 putative ATPase RIL; 100.0 6.3E-31 1.4E-35 261.0 16.9 164 65-248 339-536 (590)
344 PLN03073 ABC transporter F fam 100.0 2.4E-30 5.2E-35 261.5 21.3 170 65-252 507-712 (718)
345 KOG0061 Transporter, ABC super 100.0 4E-31 8.6E-36 263.2 14.4 191 66-268 25-271 (613)
346 PRK15177 Vi polysaccharide exp 100.0 1.5E-30 3.2E-35 227.8 16.1 153 87-253 2-191 (213)
347 cd03222 ABC_RNaseL_inhibitor T 100.0 2.2E-30 4.8E-35 220.9 16.7 135 70-250 4-159 (177)
348 cd03236 ABC_RNaseL_inhibitor_d 100.0 3.6E-31 7.8E-36 237.9 12.4 166 71-245 5-218 (255)
349 PRK11147 ABC transporter ATPas 100.0 2.6E-30 5.6E-35 258.9 19.6 182 66-253 3-242 (635)
350 cd00267 ABC_ATPase ABC (ATP-bi 100.0 1.1E-29 2.3E-34 211.4 17.4 132 69-242 2-157 (157)
351 PLN03140 ABC transporter G fam 100.0 9.9E-30 2.1E-34 272.5 20.3 177 66-251 867-1107(1470)
352 KOG0054 Multidrug resistance-a 100.0 1.5E-29 3.3E-34 265.0 19.7 205 32-255 476-732 (1381)
353 COG1134 TagH ABC-type polysacc 100.0 1.7E-29 3.8E-34 221.7 16.8 157 86-254 41-236 (249)
354 cd03238 ABC_UvrA The excision 100.0 1.7E-29 3.6E-34 215.3 15.8 141 87-246 10-169 (176)
355 PTZ00243 ABC transporter; Prov 100.0 3.6E-29 7.8E-34 270.3 21.2 157 88-257 676-873 (1560)
356 COG4138 BtuD ABC-type cobalami 100.0 1.1E-30 2.5E-35 219.2 6.1 189 66-269 3-236 (248)
357 TIGR00956 3a01205 Pleiotropic 100.0 1.4E-29 3E-34 271.3 15.0 162 87-252 76-298 (1394)
358 COG4107 PhnK ABC-type phosphon 100.0 2.8E-29 6.1E-34 210.8 12.8 186 64-257 4-244 (258)
359 PLN03140 ABC transporter G fam 100.0 1.3E-29 2.9E-34 271.5 13.9 163 87-253 180-426 (1470)
360 PRK13409 putative ATPase RIL; 100.0 7.7E-29 1.7E-33 246.1 13.4 162 71-241 78-287 (590)
361 COG4136 ABC-type uncharacteriz 100.0 2.5E-28 5.5E-33 200.6 13.8 168 66-247 2-208 (213)
362 PF00005 ABC_tran: ABC transpo 100.0 1.6E-28 3.4E-33 198.9 10.8 114 88-207 1-137 (137)
363 COG0488 Uup ATPase components 100.0 4.5E-28 9.8E-33 236.7 16.0 171 66-253 3-239 (530)
364 PLN03073 ABC transporter F fam 100.0 9.7E-28 2.1E-32 242.6 15.6 179 65-252 176-429 (718)
365 COG0488 Uup ATPase components 100.0 2.9E-27 6.4E-32 231.0 18.2 175 64-253 319-524 (530)
366 KOG0059 Lipid exporter ABCA1 a 99.9 2.1E-27 4.6E-32 245.3 14.6 179 65-253 563-786 (885)
367 COG4133 CcmA ABC-type transpor 99.9 8.3E-27 1.8E-31 197.5 10.5 135 68-212 4-164 (209)
368 cd03270 ABC_UvrA_I The excisio 99.9 2E-26 4.3E-31 203.4 10.0 154 87-247 10-226 (226)
369 COG4778 PhnL ABC-type phosphon 99.9 2.4E-26 5.2E-31 192.3 8.2 173 66-240 4-227 (235)
370 COG4615 PvdE ABC-type sideroph 99.9 1.7E-25 3.7E-30 207.3 9.8 195 41-246 291-529 (546)
371 cd03278 ABC_SMC_barmotin Barmo 99.9 2.1E-24 4.5E-29 187.0 11.8 139 88-240 12-190 (197)
372 cd03271 ABC_UvrA_II The excisi 99.9 2.2E-23 4.7E-28 187.9 14.3 161 88-249 11-261 (261)
373 KOG0065 Pleiotropic drug resis 99.9 3.2E-24 7E-29 221.6 9.3 160 87-251 806-1018(1391)
374 COG1129 MglA ABC-type sugar tr 99.9 2.2E-23 4.8E-28 200.6 14.4 174 66-251 263-487 (500)
375 COG4178 ABC-type uncharacteriz 99.9 2E-22 4.3E-27 197.5 17.5 150 64-229 390-570 (604)
376 cd03279 ABC_sbcCD SbcCD and ot 99.9 7.3E-23 1.6E-27 178.9 13.0 161 66-243 5-211 (213)
377 KOG0927 Predicted transporter 99.9 3.1E-23 6.8E-28 198.3 7.4 175 64-251 387-593 (614)
378 cd03272 ABC_SMC3_euk Eukaryoti 99.9 2.1E-22 4.5E-27 178.6 12.2 142 88-239 18-234 (243)
379 cd03240 ABC_Rad50 The catalyti 99.9 1.6E-21 3.5E-26 169.7 12.4 147 92-240 17-197 (204)
380 KOG0060 Long-chain acyl-CoA tr 99.9 1.6E-20 3.6E-25 180.9 17.2 201 29-241 367-642 (659)
381 COG4170 SapD ABC-type antimicr 99.8 4.7E-21 1E-25 165.6 10.9 190 66-257 3-251 (330)
382 KOG0066 eIF2-interacting prote 99.8 5.1E-21 1.1E-25 179.7 11.0 159 64-235 584-763 (807)
383 cd03274 ABC_SMC4_euk Eukaryoti 99.8 4.6E-22 1E-26 174.2 3.2 147 67-240 6-204 (212)
384 cd03273 ABC_SMC2_euk Eukaryoti 99.8 1.5E-20 3.3E-25 168.1 12.6 140 98-239 25-242 (251)
385 PRK00349 uvrA excinuclease ABC 99.8 3.5E-20 7.6E-25 191.4 16.3 75 181-256 829-929 (943)
386 PRK00635 excinuclease ABC subu 99.8 5.6E-20 1.2E-24 197.7 16.6 73 181-254 808-906 (1809)
387 KOG0927 Predicted transporter 99.8 4.1E-20 8.9E-25 177.0 13.1 184 64-253 73-308 (614)
388 COG3845 ABC-type uncharacteriz 99.8 1.1E-19 2.3E-24 172.9 14.9 181 64-251 255-489 (501)
389 TIGR00630 uvra excinuclease AB 99.8 1.1E-19 2.4E-24 187.4 15.2 71 181-252 827-923 (924)
390 KOG2355 Predicted ABC-type tra 99.8 2.8E-19 6.2E-24 154.0 14.2 183 64-256 11-242 (291)
391 cd03275 ABC_SMC1_euk Eukaryoti 99.8 3.2E-19 6.9E-24 159.3 11.6 137 100-240 24-233 (247)
392 cd03276 ABC_SMC6_euk Eukaryoti 99.8 7.5E-19 1.6E-23 152.3 12.1 143 88-242 12-192 (198)
393 KOG0062 ATPase component of AB 99.8 4.1E-19 8.8E-24 169.4 11.2 166 65-245 361-559 (582)
394 cd03280 ABC_MutS2 MutS2 homolo 99.8 3.5E-19 7.6E-24 154.2 9.5 134 88-246 17-171 (200)
395 KOG0062 ATPase component of AB 99.8 7.1E-19 1.5E-23 167.7 11.2 171 66-253 80-284 (582)
396 COG1245 Predicted ATPase, RNas 99.8 1.4E-18 3.1E-23 163.8 11.4 134 94-240 363-531 (591)
397 KOG0065 Pleiotropic drug resis 99.7 6.6E-18 1.4E-22 175.3 12.1 163 87-253 130-350 (1391)
398 KOG0064 Peroxisomal long-chain 99.7 2.8E-17 6.2E-22 157.3 12.5 147 67-229 482-665 (728)
399 cd03283 ABC_MutS-like MutS-lik 99.7 2.9E-17 6.3E-22 142.6 7.1 114 88-229 17-144 (199)
400 cd03277 ABC_SMC5_euk Eukaryoti 99.7 6.9E-17 1.5E-21 141.6 8.2 62 181-242 125-211 (213)
401 cd03243 ABC_MutS_homologs The 99.7 1.7E-16 3.7E-21 137.6 9.4 136 89-249 20-174 (202)
402 PRK00635 excinuclease ABC subu 99.7 3.6E-16 7.8E-21 168.7 13.7 75 181-256 1698-1798(1809)
403 cd03239 ABC_SMC_head The struc 99.7 1.3E-15 2.9E-20 129.9 12.8 128 91-240 15-172 (178)
404 COG0178 UvrA Excinuclease ATPa 99.7 2.9E-15 6.3E-20 149.5 16.6 75 181-256 821-921 (935)
405 cd03285 ABC_MSH2_euk MutS2 hom 99.6 2.2E-16 4.7E-21 139.3 7.3 134 88-248 20-175 (222)
406 TIGR02858 spore_III_AA stage I 99.6 6.9E-16 1.5E-20 139.8 8.2 129 99-253 112-268 (270)
407 COG1245 Predicted ATPase, RNas 99.6 1.1E-15 2.4E-20 144.4 7.7 162 71-240 79-288 (591)
408 COG2401 ABC-type ATPase fused 99.6 3.8E-15 8.1E-20 139.7 9.6 148 87-243 398-587 (593)
409 cd03227 ABC_Class2 ABC-type Cl 99.6 4.1E-15 8.9E-20 124.7 8.9 119 92-240 15-155 (162)
410 cd03282 ABC_MSH4_euk MutS4 hom 99.6 2E-15 4.3E-20 131.6 7.0 117 88-229 19-147 (204)
411 cd03241 ABC_RecN RecN ATPase i 99.6 1.8E-14 4E-19 130.8 12.8 59 182-242 170-249 (276)
412 cd03284 ABC_MutS1 MutS1 homolo 99.5 2E-14 4.3E-19 126.3 9.8 142 88-252 21-179 (216)
413 cd03242 ABC_RecF RecF is a rec 99.5 5E-13 1.1E-17 121.0 14.1 63 181-243 182-269 (270)
414 cd00820 PEPCK_HprK Phosphoenol 99.4 2.2E-13 4.8E-18 106.8 6.8 68 87-165 4-75 (107)
415 TIGR01069 mutS2 MutS2 family p 99.4 1.7E-12 3.7E-17 132.7 10.8 117 90-231 313-443 (771)
416 KOG0066 eIF2-interacting prote 99.4 5.9E-13 1.3E-17 125.8 6.7 174 66-245 264-489 (807)
417 cd03287 ABC_MSH3_euk MutS3 hom 99.4 9.4E-12 2E-16 109.9 13.2 117 88-229 21-150 (222)
418 smart00534 MUTSac ATPase domai 99.3 1.7E-12 3.7E-17 111.1 7.1 106 100-229 1-118 (185)
419 cd03281 ABC_MSH5_euk MutS5 hom 99.3 1.1E-11 2.4E-16 108.7 12.1 121 88-229 19-150 (213)
420 KOG0063 RNAse L inhibitor, ABC 99.3 1.4E-11 3.1E-16 116.1 11.2 140 88-240 352-532 (592)
421 PF02463 SMC_N: RecF/RecN/SMC 99.3 3.6E-11 7.9E-16 105.0 12.4 147 89-238 16-211 (220)
422 TIGR00630 uvra excinuclease AB 99.3 2E-11 4.4E-16 126.6 10.4 73 181-254 486-583 (924)
423 PRK00349 uvrA excinuclease ABC 99.2 2.4E-11 5.2E-16 126.3 10.3 74 181-255 488-586 (943)
424 PRK07721 fliI flagellum-specif 99.2 7.7E-11 1.7E-15 113.5 10.8 47 87-134 148-195 (438)
425 PRK00064 recF recombination pr 99.2 3.4E-10 7.3E-15 106.8 14.8 34 88-122 14-47 (361)
426 cd03286 ABC_MSH6_euk MutS6 hom 99.1 5.4E-10 1.2E-14 98.4 11.7 121 88-229 20-149 (218)
427 TIGR03238 dnd_assoc_3 dnd syst 99.1 5.3E-11 1.2E-15 114.6 5.1 49 87-137 21-71 (504)
428 cd01128 rho_factor Transcripti 99.1 1.5E-09 3.4E-14 97.4 12.3 148 93-243 11-211 (249)
429 PRK00409 recombination and DNA 99.1 1E-09 2.3E-14 112.6 12.4 114 91-229 319-446 (782)
430 PRK08533 flagellar accessory p 99.1 2E-09 4.4E-14 95.5 11.9 38 94-131 20-59 (230)
431 TIGR02788 VirB11 P-type DNA tr 99.0 4.8E-10 1E-14 103.5 7.9 145 91-268 137-294 (308)
432 PRK13695 putative NTPase; Prov 99.0 9.5E-11 2.1E-15 99.0 3.0 136 100-246 2-156 (174)
433 PTZ00132 GTP-binding nuclear p 99.0 4.7E-10 1E-14 97.6 7.0 24 100-123 11-35 (215)
434 PRK14079 recF recombination pr 99.0 5.3E-09 1.1E-13 98.3 14.5 65 181-247 262-347 (349)
435 COG3910 Predicted ATPase [Gene 98.9 1.6E-08 3.5E-13 86.6 10.7 62 181-243 128-206 (233)
436 PRK06002 fliI flagellum-specif 98.8 1.7E-08 3.6E-13 97.3 8.9 81 64-150 137-230 (450)
437 PRK06793 fliI flagellum-specif 98.8 5.2E-09 1.1E-13 100.5 5.3 156 66-247 130-304 (432)
438 TIGR00767 rho transcription te 98.8 1.9E-08 4.1E-13 95.6 7.7 94 25-123 82-193 (415)
439 COG0178 UvrA Excinuclease ATPa 98.7 7E-08 1.5E-12 97.4 10.1 75 181-256 480-579 (935)
440 cd01130 VirB11-like_ATPase Typ 98.7 1.9E-08 4.2E-13 86.1 5.1 46 88-133 15-61 (186)
441 cd02023 UMPK Uridine monophosp 98.7 2.4E-08 5.2E-13 85.9 5.5 102 100-211 1-113 (198)
442 cd01124 KaiC KaiC is a circadi 98.7 1.7E-07 3.7E-12 79.2 10.4 48 181-229 70-136 (187)
443 KOG0063 RNAse L inhibitor, ABC 98.6 5.1E-08 1.1E-12 92.5 6.3 133 95-229 97-269 (592)
444 cd01131 PilT Pilus retraction 98.6 2.2E-07 4.9E-12 80.4 9.0 36 100-135 3-40 (198)
445 PRK07196 fliI flagellum-specif 98.6 3.3E-08 7.2E-13 95.0 3.7 64 87-151 145-223 (434)
446 PF13304 AAA_21: AAA domain; P 98.5 1.6E-07 3.4E-12 80.5 6.5 50 183-233 237-299 (303)
447 PRK06995 flhF flagellar biosyn 98.5 2.6E-07 5.7E-12 90.0 7.9 40 88-127 246-286 (484)
448 PRK08149 ATP synthase SpaL; Va 98.5 1.9E-07 4.1E-12 89.7 6.6 63 87-150 141-216 (428)
449 TIGR01026 fliI_yscN ATPase Fli 98.5 1.6E-07 3.4E-12 90.8 6.0 47 87-134 153-200 (440)
450 cd01120 RecA-like_NTPases RecA 98.5 5.9E-07 1.3E-11 73.1 8.3 33 100-132 1-34 (165)
451 PRK13830 conjugal transfer pro 98.5 9.7E-07 2.1E-11 91.5 11.3 54 194-248 650-727 (818)
452 PF09818 ABC_ATPase: Predicted 98.4 3.7E-06 8E-11 80.4 13.2 135 93-243 240-416 (448)
453 PF13555 AAA_29: P-loop contai 98.4 2.9E-07 6.3E-12 65.2 4.1 35 88-122 12-47 (62)
454 TIGR00634 recN DNA repair prot 98.4 5.3E-07 1.1E-11 89.8 6.8 59 182-242 440-519 (563)
455 TIGR01420 pilT_fam pilus retra 98.4 2.2E-06 4.8E-11 80.4 10.1 39 96-134 120-160 (343)
456 TIGR03881 KaiC_arch_4 KaiC dom 98.4 2.6E-07 5.6E-12 81.2 3.5 40 94-133 16-57 (229)
457 PRK10078 ribose 1,5-bisphospho 98.4 4.4E-07 9.5E-12 77.5 4.7 50 98-149 2-56 (186)
458 smart00382 AAA ATPases associa 98.3 5.8E-06 1.3E-10 64.4 10.6 37 97-133 1-39 (148)
459 PHA02562 46 endonuclease subun 98.3 6.9E-07 1.5E-11 88.4 6.2 63 181-243 467-555 (562)
460 cd01136 ATPase_flagellum-secre 98.3 5.5E-07 1.2E-11 83.8 5.1 46 88-134 60-106 (326)
461 TIGR00618 sbcc exonuclease Sbc 98.3 1E-06 2.2E-11 93.6 7.4 60 181-241 949-1036(1042)
462 TIGR00235 udk uridine kinase. 98.3 4.1E-07 8.8E-12 79.0 3.7 28 96-123 4-31 (207)
463 PRK07594 type III secretion sy 98.3 5.7E-07 1.2E-11 86.6 5.0 63 66-134 129-192 (433)
464 PRK09825 idnK D-gluconate kina 98.3 6.6E-07 1.4E-11 76.2 4.6 37 97-136 2-38 (176)
465 PRK07960 fliI flagellum-specif 98.3 8.6E-07 1.9E-11 85.6 5.0 62 88-150 166-239 (455)
466 PRK06067 flagellar accessory p 98.3 9.7E-06 2.1E-10 71.6 11.0 26 94-119 21-46 (234)
467 PRK01889 GTPase RsgA; Reviewed 98.3 6.4E-07 1.4E-11 84.5 3.7 64 88-151 185-251 (356)
468 PRK10869 recombination and rep 98.3 2E-06 4.3E-11 85.6 7.2 58 183-242 431-509 (553)
469 PRK09270 nucleoside triphospha 98.2 8.2E-07 1.8E-11 78.4 3.8 32 97-128 32-64 (229)
470 PLN02796 D-glycerate 3-kinase 98.2 4.2E-07 9E-12 85.0 2.0 49 88-136 82-142 (347)
471 PRK09099 type III secretion sy 98.2 1.1E-06 2.5E-11 84.7 5.0 47 87-134 153-200 (441)
472 PRK05399 DNA mismatch repair p 98.2 1.8E-05 4E-10 82.5 14.3 33 88-121 598-630 (854)
473 TIGR03497 FliI_clade2 flagella 98.2 1.9E-06 4E-11 82.8 5.6 47 88-135 128-175 (413)
474 PRK09862 putative ATP-dependen 98.2 1.2E-06 2.5E-11 86.1 4.0 62 69-136 187-249 (506)
475 PRK00300 gmk guanylate kinase; 98.2 1.2E-06 2.6E-11 75.5 3.6 28 96-123 3-30 (205)
476 PRK03846 adenylylsulfate kinas 98.2 1.2E-06 2.7E-11 75.5 3.5 41 96-136 22-64 (198)
477 TIGR02546 III_secr_ATP type II 98.2 1.4E-06 3.1E-11 83.8 4.2 47 87-134 135-182 (422)
478 PRK14722 flhF flagellar biosyn 98.2 4.8E-06 1E-10 78.9 7.6 36 88-123 127-162 (374)
479 TIGR03498 FliI_clade3 flagella 98.2 1.7E-06 3.8E-11 83.0 4.6 48 88-136 131-179 (418)
480 TIGR02524 dot_icm_DotB Dot/Icm 98.2 3.1E-06 6.6E-11 79.9 5.9 28 96-123 132-159 (358)
481 TIGR02322 phosphon_PhnN phosph 98.1 2.5E-06 5.4E-11 72.0 4.3 33 98-130 1-33 (179)
482 PRK03918 chromosome segregatio 98.1 5.4E-06 1.2E-10 86.3 7.2 58 181-239 787-867 (880)
483 PRK08472 fliI flagellum-specif 98.1 2.8E-06 6.1E-11 81.9 4.5 49 87-136 147-196 (434)
484 PRK15494 era GTPase Era; Provi 98.1 2E-06 4.4E-11 80.5 3.4 53 64-121 16-75 (339)
485 PRK05922 type III secretion sy 98.1 4E-06 8.6E-11 80.8 5.4 46 88-134 148-194 (434)
486 cd01125 repA Hexameric Replica 98.1 1.5E-05 3.2E-10 70.8 8.6 38 194-232 109-158 (239)
487 TIGR00606 rad50 rad50. This fa 98.1 5.8E-06 1.3E-10 89.8 7.2 50 99-148 29-87 (1311)
488 TIGR03496 FliI_clade1 flagella 98.1 3.8E-06 8.2E-11 80.6 5.0 60 69-134 114-174 (411)
489 TIGR03263 guanyl_kin guanylate 98.1 2.9E-06 6.3E-11 71.5 3.5 26 98-123 1-26 (180)
490 PF13476 AAA_23: AAA domain; P 98.1 3.7E-06 8.1E-11 71.1 4.2 34 88-122 10-43 (202)
491 PRK10246 exonuclease subunit S 98.1 7.6E-06 1.6E-10 87.1 7.4 59 181-240 948-1032(1047)
492 cd00879 Sar1 Sar1 subfamily. 98.1 3.2E-06 6.9E-11 71.5 3.6 32 88-120 10-41 (190)
493 PRK05688 fliI flagellum-specif 98.1 3.2E-06 6.9E-11 81.8 4.0 47 87-134 158-208 (451)
494 PRK01156 chromosome segregatio 98.1 9.6E-06 2.1E-10 84.9 7.9 59 181-239 800-883 (895)
495 PRK10416 signal recognition pa 98.1 3.2E-06 6.9E-11 78.6 3.8 40 96-135 112-152 (318)
496 TIGR00554 panK_bact pantothena 98.0 3.1E-06 6.8E-11 77.6 3.4 36 99-134 63-101 (290)
497 PRK06315 type III secretion sy 98.0 3.9E-06 8.4E-11 81.1 3.9 46 86-132 153-200 (442)
498 PRK14723 flhF flagellar biosyn 98.0 3.6E-06 7.8E-11 85.9 3.7 47 88-134 175-224 (767)
499 PRK04863 mukB cell division pr 98.0 9.7E-06 2.1E-10 88.3 7.0 46 88-134 18-64 (1486)
500 cd02025 PanK Pantothenate kina 98.0 4.2E-06 9.2E-11 73.7 3.2 24 100-123 1-24 (220)
No 1
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.9e-49 Score=339.79 Aligned_cols=184 Identities=18% Similarity=0.281 Sum_probs=159.8
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCC------CC
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSG------NS 138 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~------~~ 138 (273)
+|+++|++++| |+..+ |++||++|++||+++|+||||||||||||||++|.+ ++|+|+++|.++. ..
T Consensus 2 mi~i~~l~K~f--g~~~V----Lkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~ 75 (240)
T COG1126 2 MIEIKNLSKSF--GDKEV----LKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKL 75 (240)
T ss_pred eEEEEeeeEEe--CCeEE----ecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHH
Confidence 68999999999 56777 999999999999999999999999999999999999 9999999998664 36
Q ss_pred CccEEEEeccchhhhccCCcccccccc--------cCCHHH----HHHHHHHhc---------ccCCHHHHHHH---Hh-
Q 024032 139 SHTITMYMEEHNVMRSLQSGFCVYDSR--------GFNYNR----VHEGLEELS---------SWMSEGVHHNQ---RC- 193 (273)
Q Consensus 139 ~~~i~~v~q~~~~~~~~~~~~tv~en~--------~~~~~~----~~~~l~~~~---------~~LSgGqkq~~---r~- 193 (273)
|+++|+|||+.++||++ ||.||. +.++++ +.+.|++++ .+||||||||. |+
T Consensus 76 R~~vGmVFQ~fnLFPHl----TvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARAL 151 (240)
T COG1126 76 RRKVGMVFQQFNLFPHL----TVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARAL 151 (240)
T ss_pred HHhcCeecccccccccc----hHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHH
Confidence 88999999999997776 999992 344444 445566666 78999999987 44
Q ss_pred cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChhhH
Q 024032 194 LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPGLR 259 (273)
Q Consensus 194 l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~l~ 259 (273)
+.+|+++|+|||||+|||+ +.++.++++ |+|+++| +.||||++|++|++++.|+++++|.+|..+
T Consensus 152 aM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~e-GmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p~~~ 230 (240)
T COG1126 152 AMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEE-GMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPKSE 230 (240)
T ss_pred cCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHc-CCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCCCCH
Confidence 7899999999999999999 557788877 9999999 568999999999999999999999877544
Q ss_pred H
Q 024032 260 K 260 (273)
Q Consensus 260 ~ 260 (273)
+
T Consensus 231 R 231 (240)
T COG1126 231 R 231 (240)
T ss_pred H
Confidence 3
No 2
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=2.1e-47 Score=340.69 Aligned_cols=195 Identities=19% Similarity=0.242 Sum_probs=170.9
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CC
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SS 139 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~ 139 (273)
.++++|++++|. ++++ |+++||++++|++++|+||||||||||||+|+|+++ .+|+|+++|+++.. +.
T Consensus 2 ~L~~~~ls~~y~--~~~i----l~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelA 75 (258)
T COG1120 2 MLEVENLSFGYG--GKPI----LDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELA 75 (258)
T ss_pred eeEEEEEEEEEC--CeeE----EecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHh
Confidence 578999999994 6778 999999999999999999999999999999999999 99999999999864 56
Q ss_pred ccEEEEeccchhhhccCCccccccccc---------------CCHHHHHHHHHHhc---------ccCCHHHHHHH---H
Q 024032 140 HTITMYMEEHNVMRSLQSGFCVYDSRG---------------FNYNRVHEGLEELS---------SWMSEGVHHNQ---R 192 (273)
Q Consensus 140 ~~i~~v~q~~~~~~~~~~~~tv~en~~---------------~~~~~~~~~l~~~~---------~~LSgGqkq~~---r 192 (273)
++++|++|.+.. .+++||+|... .+.+.+.++++.++ .+||||||||. |
T Consensus 76 k~ia~vpQ~~~~----~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iAr 151 (258)
T COG1120 76 KKLAYVPQSPSA----PFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIAR 151 (258)
T ss_pred hhEEEeccCCCC----CCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHH
Confidence 889999999864 67779998611 12345777888877 78999999986 3
Q ss_pred h-cCCCCEEEEcCcCCCCCHHH------HHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChh
Q 024032 193 C-LRSDDCALMKNDAEIDDLKS------SPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPG 257 (273)
Q Consensus 193 ~-l~~p~iLlLDEPts~LD~~~------~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~ 257 (273)
+ +++|++|||||||++||+.+ .++++.++.|+|||++ ++||++++|++|++++.|+|+++++.+.
T Consensus 152 ALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT~e~ 231 (258)
T COG1120 152 ALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTEEN 231 (258)
T ss_pred HHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcCHHH
Confidence 4 79999999999999999994 4567776779999999 7799999999999999999999999999
Q ss_pred hHHHhCCceEEEE
Q 024032 258 LRKCSKISFCILV 270 (273)
Q Consensus 258 l~~~~~~~~~~~~ 270 (273)
+.++|++++.+..
T Consensus 232 l~~Vygv~~~~~~ 244 (258)
T COG1120 232 LREVYGVDADVIE 244 (258)
T ss_pred HHHHhCCceEEEE
Confidence 9999999977664
No 3
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=2.2e-46 Score=329.30 Aligned_cols=189 Identities=17% Similarity=0.251 Sum_probs=163.4
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CC
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SS 139 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~ 139 (273)
+|+++||+|+|. ++.+ ++++||+|++||++++||||||||||+||+|++|++ ++|+|+++|+++.+ +|
T Consensus 1 MI~~~nvsk~y~--~~~a----v~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LR 74 (309)
T COG1125 1 MIEFENVSKRYG--NKKA----VDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELR 74 (309)
T ss_pred CceeeeeehhcC--Ccee----eeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHH
Confidence 479999999995 5666 999999999999999999999999999999999999 99999999999974 78
Q ss_pred ccEEEEeccchhhhccCCcccccccc-------cCCHHH----HHHHHHHhc-----------ccCCHHHHHHH---Hh-
Q 024032 140 HTITMYMEEHNVMRSLQSGFCVYDSR-------GFNYNR----VHEGLEELS-----------SWMSEGVHHNQ---RC- 193 (273)
Q Consensus 140 ~~i~~v~q~~~~~~~~~~~~tv~en~-------~~~~~~----~~~~l~~~~-----------~~LSgGqkq~~---r~- 193 (273)
++||||.|+..+||++ ||.+|. ++++++ +++.++.++ ++|||||+||+ |+
T Consensus 75 r~IGYviQqigLFPh~----Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RAL 150 (309)
T COG1125 75 RKIGYVIQQIGLFPHL----TVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARAL 150 (309)
T ss_pred HhhhhhhhhcccCCCc----cHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHH
Confidence 9999999999987765 999993 445544 455555555 78999999996 55
Q ss_pred cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChh--
Q 024032 194 LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPG-- 257 (273)
Q Consensus 194 l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~-- 257 (273)
+.+|++|||||||++|||. +.++++.++.|+||++| +++|||++|++|+++..++|++++.+|.
T Consensus 151 AadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pan~ 230 (309)
T COG1125 151 AADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPAND 230 (309)
T ss_pred hcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCccHH
Confidence 7899999999999999999 34667888889999999 6789999999999999999999998765
Q ss_pred -hHHHhCC
Q 024032 258 -LRKCSKI 264 (273)
Q Consensus 258 -l~~~~~~ 264 (273)
++..+|.
T Consensus 231 FV~~f~g~ 238 (309)
T COG1125 231 FVEDFFGE 238 (309)
T ss_pred HHHHHhcc
Confidence 4444454
No 4
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.4e-46 Score=333.78 Aligned_cols=185 Identities=21% Similarity=0.284 Sum_probs=160.7
Q ss_pred ceEEEEEEEEeecC-CeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC------
Q 024032 66 LNELRHKFLSYRSG-DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------ 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g-~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------ 137 (273)
+|++++|+|.|..+ +..+ .+|+||||+|++||++||||+||||||||+|+|++|.+ ++|+|.++|+++..
T Consensus 1 mI~l~~vsK~~~~~~~~~~--~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~L 78 (339)
T COG1135 1 MIELENVSKTFGQTGTGTV--TALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAEL 78 (339)
T ss_pred CeEEEeeeeeeccCCCCce--eeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHH
Confidence 48999999999763 2223 35999999999999999999999999999999999999 99999999988863
Q ss_pred --CCccEEEEeccchhhhccCCcccccccccC-------CHH----HHHHHHHHhc---------ccCCHHHHHHH---H
Q 024032 138 --SSHTITMYMEEHNVMRSLQSGFCVYDSRGF-------NYN----RVHEGLEELS---------SWMSEGVHHNQ---R 192 (273)
Q Consensus 138 --~~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~~~----~~~~~l~~~~---------~~LSgGqkq~~---r 192 (273)
.|++||++||++++ +...||++|..+ +++ ++.+.++.++ .+||||||||+ |
T Consensus 79 r~~R~~IGMIFQhFnL----LssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIAR 154 (339)
T COG1135 79 RQLRQKIGMIFQHFNL----LSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIAR 154 (339)
T ss_pred HHHHhhccEEeccccc----cccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHH
Confidence 57889999999997 455699999533 333 4556677666 78999999987 5
Q ss_pred h-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 193 C-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 193 ~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
| +.+|++||.|||||+|||. +++++++++.|.||++| ++|||++||++|++++.|+..++|.+|
T Consensus 155 ALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~~P 233 (339)
T COG1135 155 ALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFANP 233 (339)
T ss_pred HHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhcCc
Confidence 5 7899999999999999999 56788999999999999 679999999999999999999999876
No 5
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.6e-44 Score=319.57 Aligned_cols=191 Identities=17% Similarity=0.160 Sum_probs=165.9
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCC--cc
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSS--HT 141 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~--~~ 141 (273)
..++++|++++|.++ ++ |+||||+|++|++++||||||||||||+|+|+|+++ .+|+|.+.|+++...+ .+
T Consensus 3 ~~i~v~nl~v~y~~~--~v----l~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~ 76 (254)
T COG1121 3 PMIEVENLTVSYGNR--PV----LEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLR 76 (254)
T ss_pred cEEEEeeeEEEECCE--ee----eeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCe
Confidence 368999999999643 57 999999999999999999999999999999999999 9999999999887644 78
Q ss_pred EEEEeccchhhhccCCccccccccc---------------CCHHHHHHHHHHhc---------ccCCHHHHHHH---Hh-
Q 024032 142 ITMYMEEHNVMRSLQSGFCVYDSRG---------------FNYNRVHEGLEELS---------SWMSEGVHHNQ---RC- 193 (273)
Q Consensus 142 i~~v~q~~~~~~~~~~~~tv~en~~---------------~~~~~~~~~l~~~~---------~~LSgGqkq~~---r~- 193 (273)
||||+|.... . ..|+.||+|... .+.+.+.++|++++ .+|||||+||. ||
T Consensus 77 IgYVPQ~~~~-d-~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL 154 (254)
T COG1121 77 IGYVPQKSSV-D-RSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARAL 154 (254)
T ss_pred EEEcCccccc-C-CCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHh
Confidence 9999997732 2 267889998621 13478899999998 78999999986 44
Q ss_pred cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChhhH
Q 024032 194 LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPGLR 259 (273)
Q Consensus 194 l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~l~ 259 (273)
+++|++|+|||||+|+|+. +++++++++ |+||++| .++|+|++|+ +++.+.|+++++++.+.+.
T Consensus 155 ~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-g~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~~~~~~l~ 232 (254)
T COG1121 155 AQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-GKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEVLTEENLE 232 (254)
T ss_pred ccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhhccCHHHHH
Confidence 7999999999999999999 557888888 9999999 6689999995 6889999999999999999
Q ss_pred HHhCCc
Q 024032 260 KCSKIS 265 (273)
Q Consensus 260 ~~~~~~ 265 (273)
..|+..
T Consensus 233 ~~~g~~ 238 (254)
T COG1121 233 KAFGGS 238 (254)
T ss_pred HHhCcc
Confidence 999843
No 6
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=5.3e-44 Score=312.14 Aligned_cols=190 Identities=20% Similarity=0.293 Sum_probs=163.4
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN----- 137 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~----- 137 (273)
...|++++++++| |++.| ++++||+|++||+++|+||||||||||+|+|.|+++ ++|+|+++|+++..
T Consensus 6 ~~~I~vr~v~~~f--G~~~I----ld~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~ 79 (263)
T COG1127 6 EPLIEVRGVTKSF--GDRVI----LDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEE 79 (263)
T ss_pred cceEEEeeeeeec--CCEEE----ecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHH
Confidence 4579999999998 67888 999999999999999999999999999999999999 99999999999863
Q ss_pred ---CCccEEEEeccchhhhccCCcccccccccC--------CHHHHH----HHHHHhc----------ccCCHHHHHHH-
Q 024032 138 ---SSHTITMYMEEHNVMRSLQSGFCVYDSRGF--------NYNRVH----EGLEELS----------SWMSEGVHHNQ- 191 (273)
Q Consensus 138 ---~~~~i~~v~q~~~~~~~~~~~~tv~en~~~--------~~~~~~----~~l~~~~----------~~LSgGqkq~~- 191 (273)
.++++|++||+..+| ..+||+||..+ ++..++ ..++.++ ++|||||++|.
T Consensus 80 ~~~ir~r~GvlFQ~gALF----ssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRva 155 (263)
T COG1127 80 LYEIRKRMGVLFQQGALF----SSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVA 155 (263)
T ss_pred HHHHHhheeEEeeccccc----cccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHH
Confidence 567899999999974 55699999654 333333 3444444 89999999876
Q ss_pred --Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhcc
Q 024032 192 --RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFS 254 (273)
Q Consensus 192 --r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~ 254 (273)
|| +.+|+||++||||+||||. ++++++++..|.|+++| ++|||++++.+|+|+..|+++++.+
T Consensus 156 LARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 156 LARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLA 235 (263)
T ss_pred HHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHh
Confidence 44 7899999999999999999 67888998889999999 6689999999999999999999985
Q ss_pred --ChhhHHHhC
Q 024032 255 --APGLRKCSK 263 (273)
Q Consensus 255 --~~~l~~~~~ 263 (273)
+|.+.++++
T Consensus 236 sd~P~v~qf~~ 246 (263)
T COG1127 236 SDDPWVRQFFN 246 (263)
T ss_pred CCCHHHHHHhc
Confidence 466766664
No 7
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.1e-44 Score=313.90 Aligned_cols=190 Identities=19% Similarity=0.263 Sum_probs=165.1
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-------
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------- 137 (273)
.|+++|++++|+ +++.+ |++|||+|++||++|||||||||||||||+|+|+.+ ++|+|.++|.++..
T Consensus 3 ~i~~~nl~k~yp-~~~~a----L~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr 77 (258)
T COG3638 3 MIEVKNLSKTYP-GGHQA----LKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELR 77 (258)
T ss_pred eEEEeeeeeecC-CCcee----eeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHH
Confidence 689999999998 45566 999999999999999999999999999999999999 99999999987753
Q ss_pred -CCccEEEEeccchhhhccCCcccccccc----------------cCC---HHHHHHHHHHhc---------ccCCHHHH
Q 024032 138 -SSHTITMYMEEHNVMRSLQSGFCVYDSR----------------GFN---YNRVHEGLEELS---------SWMSEGVH 188 (273)
Q Consensus 138 -~~~~i~~v~q~~~~~~~~~~~~tv~en~----------------~~~---~~~~~~~l~~~~---------~~LSgGqk 188 (273)
+|+++||+||++++.+++ +|++|. .++ +..+.++|++++ .+|||||+
T Consensus 78 ~~r~~iGmIfQ~~nLv~r~----sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQ 153 (258)
T COG3638 78 KLRRDIGMIFQQFNLVPRL----SVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQ 153 (258)
T ss_pred HHHHhceeEeccCCccccc----HHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchh
Confidence 568899999999986554 899882 122 344567777777 88999999
Q ss_pred HHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChh
Q 024032 189 HNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATK 250 (273)
Q Consensus 189 q~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~ 250 (273)
||+ |+ +++|+++|.|||+++|||. +.+++++++.|.|+|+. ++||||+-|++|+|+.+|++.
T Consensus 154 QRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~~ 233 (258)
T COG3638 154 QRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPAS 233 (258)
T ss_pred HHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCChh
Confidence 997 44 7899999999999999999 55788888889999999 789999999999999999999
Q ss_pred hhccChhhHHHhCCc
Q 024032 251 RLFSAPGLRKCSKIS 265 (273)
Q Consensus 251 ~l~~~~~l~~~~~~~ 265 (273)
+ +++..+.++|+.+
T Consensus 234 e-l~~~~~~~iYg~~ 247 (258)
T COG3638 234 E-LTDEALDEIYGNE 247 (258)
T ss_pred h-hhHHHHHHHhccc
Confidence 9 4777889999864
No 8
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2e-43 Score=325.96 Aligned_cols=183 Identities=22% Similarity=0.313 Sum_probs=157.9
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC---CCcc
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---SSHT 141 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---~~~~ 141 (273)
.++++|++++|.. ..+ |+++||+|++||+++|+||||||||||||+|+||.+ ++|+|.|+|+++++ ..|.
T Consensus 3 ~i~l~~v~K~yg~--~~~----l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~ 76 (338)
T COG3839 3 ELELKNVRKSFGS--FEV----LKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRG 76 (338)
T ss_pred EEEEeeeEEEcCC--cee----eecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCC
Confidence 6899999999953 225 999999999999999999999999999999999999 99999999999986 4578
Q ss_pred EEEEeccchhhhccCCcccccccccC-------CH----HHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCC
Q 024032 142 ITMYMEEHNVMRSLQSGFCVYDSRGF-------NY----NRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSD 197 (273)
Q Consensus 142 i~~v~q~~~~~~~~~~~~tv~en~~~-------~~----~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p 197 (273)
+++|||+..+||++ ||++|..+ ++ +++.++++.++ .+||||||||+ |+ +++|
T Consensus 77 iamVFQ~yALyPhm----tV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P 152 (338)
T COG3839 77 IAMVFQNYALYPHM----TVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKP 152 (338)
T ss_pred EEEEeCCccccCCC----cHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCC
Confidence 99999999986665 99999543 23 34555555555 88999999987 44 7999
Q ss_pred CEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChhh
Q 024032 198 DCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPGL 258 (273)
Q Consensus 198 ~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~l 258 (273)
+++|||||+|+||.. ..++++.++.|.|+|+| .++|||+||++|+|.+.|+|.+++.+|.-
T Consensus 153 ~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~n 227 (338)
T COG3839 153 KVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPAN 227 (338)
T ss_pred CEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCccc
Confidence 999999999999999 34677888889999999 66899999999999999999999987653
No 9
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=1.8e-43 Score=354.48 Aligned_cols=219 Identities=16% Similarity=0.224 Sum_probs=184.8
Q ss_pred hhhhhhhhccchhhhhhhhHHHHHHHhchhhh--------ccCCCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCc
Q 024032 28 KFDECVKLKLDLPNVSTLTPRLRVLREMERLA--------LIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVI 99 (273)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~--------~~~~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge 99 (273)
....+...-.++++...+..|+.++++.+++. .+...+.++++|++|+|...+.++ |+|+||+|++||
T Consensus 425 pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~~~~~~~~~~g~I~~~nvsf~y~~~~~~v----L~~isL~I~~Ge 500 (709)
T COG2274 425 PITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKTLIHLPKLQGEIEFENVSFRYGPDDPPV----LEDLSLEIPPGE 500 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccccccccCceEEEEEEEEEeCCCCcch----hhceeEEeCCCC
Confidence 34456666688999999999999999977642 112246799999999998766667 999999999999
Q ss_pred EEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCcccccccc-----cCC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSR-----GFN 168 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~-----~~~ 168 (273)
++||+|+||||||||+|+|.|+|+ ++|+|.+||.|+.. +|+.+++|+|++.+ |..|++||. ..+
T Consensus 501 ~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~L-----f~gSI~eNi~l~~p~~~ 575 (709)
T COG2274 501 KVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFL-----FSGSIRENIALGNPEAT 575 (709)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchh-----hcCcHHHHHhcCCCCCC
Confidence 999999999999999999999999 99999999999864 78999999999984 556999993 446
Q ss_pred HHHHHHHHHHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHH
Q 024032 169 YNRVHEGLEELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYV 218 (273)
Q Consensus 169 ~~~~~~~l~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l 218 (273)
.+++.++++.++ ..||||||||. |+ +++|+|||||||||+||+. +.+.++
T Consensus 576 ~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~ 655 (709)
T COG2274 576 DEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQI 655 (709)
T ss_pred HHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHH
Confidence 677877777766 56999999986 55 8999999999999999999 224444
Q ss_pred HhcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccChh
Q 024032 219 LRRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSAPG 257 (273)
Q Consensus 219 ~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~~ 257 (273)
.+ |+|+|+| +.||||+||++|+|+++|+++++++...
T Consensus 656 ~~--~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~~g 699 (709)
T COG2274 656 LQ--GRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQGG 699 (709)
T ss_pred hc--CCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHHhcC
Confidence 43 7888888 6799999999999999999999987543
No 10
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-43 Score=328.89 Aligned_cols=184 Identities=20% Similarity=0.311 Sum_probs=160.0
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC---CCc
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---SSH 140 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---~~~ 140 (273)
..++++|++++|. +..+ |+|+||+|++||+++|+||||||||||||+|+|+.. ++|+|.++|+++.. .+|
T Consensus 4 ~~l~i~~v~k~yg--~~~a----v~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR 77 (352)
T COG3842 4 PALEIRNVSKSFG--DFTA----VDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKR 77 (352)
T ss_pred ceEEEEeeeeecC--CeeE----EecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhc
Confidence 4789999999995 5666 999999999999999999999999999999999999 99999999999975 567
Q ss_pred cEEEEeccchhhhccCCcccccccccC--------CH----HHHHHHHHHhc---------ccCCHHHHHHH---Hh-cC
Q 024032 141 TITMYMEEHNVMRSLQSGFCVYDSRGF--------NY----NRVHEGLEELS---------SWMSEGVHHNQ---RC-LR 195 (273)
Q Consensus 141 ~i~~v~q~~~~~~~~~~~~tv~en~~~--------~~----~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~ 195 (273)
.+++|||+..+||++ ||+||..+ .. +++.++++.++ .+||||||||+ |+ +.
T Consensus 78 ~ig~VFQ~YALFPHl----tV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~ 153 (352)
T COG3842 78 PIGMVFQSYALFPHM----TVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVP 153 (352)
T ss_pred ccceeecCcccCCCC----cHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhc
Confidence 899999999997776 99999432 22 35666777766 88999999987 44 67
Q ss_pred CCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChhh
Q 024032 196 SDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPGL 258 (273)
Q Consensus 196 ~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~l 258 (273)
+|++||||||+|+||.. ..++++.++.|+|.|+| .++|||+||++|+|...|+|++++..|.-
T Consensus 154 ~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P~~ 230 (352)
T COG3842 154 EPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERPAT 230 (352)
T ss_pred CcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCcch
Confidence 99999999999999999 23566777779999999 56899999999999999999999987753
No 11
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.3e-43 Score=344.57 Aligned_cols=216 Identities=17% Similarity=0.213 Sum_probs=183.4
Q ss_pred hhhhhhccchhhhhhhhHHHHHHHhchhhh------cc-CCCCceEEEEEEEEeecC-CeeeeccceeeeeeEEcCCcEE
Q 024032 30 DECVKLKLDLPNVSTLTPRLRVLREMERLA------LI-APDGLNELRHKFLSYRSG-DFWIPIGGIQKGGMDIPPVITI 101 (273)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~------~~-~~~~~i~~~~v~~~y~~g-~~~v~~~~L~~is~~i~~Ge~~ 101 (273)
..+...-.++-++..+.+|++++++.+|.- .+ ...+.|+|+||+|+|+.. +.+| |+|+||+|+|||++
T Consensus 422 ~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~G~~~p~~~~G~IeF~~VsFaYP~Rp~~~V----lk~lsfti~pGe~v 497 (716)
T KOG0058|consen 422 SGLSSFYSELMKGVGASERVFELMDRKPRIPLTGTLAPDHLQGVIEFEDVSFAYPTRPDVPV----LKNLSFTIRPGEVV 497 (716)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHhccCCCCCCCCccccccccceEEEEEeeeecCCCCCchh----hcCceeeeCCCCEE
Confidence 344455566778899999999999977631 11 245789999999999865 3345 99999999999999
Q ss_pred EEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCcccccccc-----cCCHH
Q 024032 102 LLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSR-----GFNYN 170 (273)
Q Consensus 102 aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~-----~~~~~ 170 (273)
|||||||+||||+.++|.++|. ++|+|.+||.|+++ ++++|++|-|+|.+ |+.||.||. ..+++
T Consensus 498 ALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvL-----Fs~sI~eNI~YG~~~~t~e 572 (716)
T KOG0058|consen 498 ALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVL-----FSGSIRENIAYGLDNATDE 572 (716)
T ss_pred EEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeecccee-----ecccHHHHHhcCCCCCCHH
Confidence 9999999999999999999999 99999999999985 67899999999994 566999994 34678
Q ss_pred HHHHHHHHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHh
Q 024032 171 RVHEGLEELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLR 220 (273)
Q Consensus 171 ~~~~~l~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~ 220 (273)
++..++++++ .+||||||||. || +++|.||||||.||+||.+ +.+.++.+
T Consensus 573 ~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~ 652 (716)
T KOG0058|consen 573 EIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ 652 (716)
T ss_pred HHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc
Confidence 8888888776 58999999987 44 8999999999999999999 23444444
Q ss_pred cCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 221 RVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 221 ~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
++|||+| +.||+|+|+++|++++.|+++|+++.+
T Consensus 653 --~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~~~ 693 (716)
T KOG0058|consen 653 --GRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDELLSKP 693 (716)
T ss_pred --CCeEEEEehhhhHhhhccEEEEEcCCeEEecccHHHHhhCc
Confidence 7899998 779999999999999999999999877
No 12
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.7e-43 Score=300.54 Aligned_cols=183 Identities=20% Similarity=0.298 Sum_probs=152.1
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-C-----ccEEEECCeeCCC-
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R-----SGLVLFAQTSSGN- 137 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~-----~G~I~i~g~~i~~- 137 (273)
..++++|+++.| |++.+ |++||++|++++++|||||||||||||||+++++.. . +|+|.++|+++.+
T Consensus 6 ~~~~~~~l~~yY--g~~~a----L~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~ 79 (253)
T COG1117 6 PAIEVRDLNLYY--GDKHA----LKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDP 79 (253)
T ss_pred ceeEecceeEEE--Cchhh----hccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCC
Confidence 468899999998 45555 999999999999999999999999999999999876 3 5999999999863
Q ss_pred ------CCccEEEEeccchhhhccCCcccccccccC-------C----HHHHHHHHHHhc-------------ccCCHHH
Q 024032 138 ------SSHTITMYMEEHNVMRSLQSGFCVYDSRGF-------N----YNRVHEGLEELS-------------SWMSEGV 187 (273)
Q Consensus 138 ------~~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~----~~~~~~~l~~~~-------------~~LSgGq 187 (273)
+|+++|+|||.|+. |.+||+||..+ . ++.+++.|+.+. ..|||||
T Consensus 80 ~~d~~~lRr~vGMVFQkPnP-----Fp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQ 154 (253)
T COG1117 80 KVDVVELRRRVGMVFQKPNP-----FPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQ 154 (253)
T ss_pred CCCHHHHHHHheeeccCCCC-----CCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhH
Confidence 68999999999995 45699999321 1 122444444443 6699999
Q ss_pred HHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecCh
Q 024032 188 HHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDAT 249 (273)
Q Consensus 188 kq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~ 249 (273)
|||. |+ +.+|++||||||||+|||. +++.+|.+ .-||+|| +.+|+.+++..|++++.|++
T Consensus 155 QQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~--~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T 232 (253)
T COG1117 155 QQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK--KYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPT 232 (253)
T ss_pred HHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh--ccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCH
Confidence 9997 44 6799999999999999999 45667765 6899998 55799999999999999999
Q ss_pred hhhccChhhHH
Q 024032 250 KRLFSAPGLRK 260 (273)
Q Consensus 250 ~~l~~~~~l~~ 260 (273)
+++|.+|..++
T Consensus 233 ~~iF~~P~~~~ 243 (253)
T COG1117 233 DKIFTNPKHKR 243 (253)
T ss_pred HhhhcCccHHH
Confidence 99999876544
No 13
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.5e-42 Score=303.12 Aligned_cols=168 Identities=19% Similarity=0.222 Sum_probs=145.1
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEEE
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~~ 144 (273)
.+++++++++|.. ..+ |+|+||+|++||+++||||||||||||||+|+|+.+ ++|+|.++|+.+......++|
T Consensus 3 ~l~i~~v~~~f~~--~~v----l~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~ 76 (248)
T COG1116 3 LLEIEGVSKSFGG--VEV----LEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGY 76 (248)
T ss_pred eEEEEeeEEEeCc--eEE----eccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEE
Confidence 5789999999954 566 999999999999999999999999999999999999 999999999999777888999
Q ss_pred EeccchhhhccCCcccccccccC-------C----HHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCCEE
Q 024032 145 YMEEHNVMRSLQSGFCVYDSRGF-------N----YNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDDCA 200 (273)
Q Consensus 145 v~q~~~~~~~~~~~~tv~en~~~-------~----~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~iL 200 (273)
+||++.++|+. ||+||..+ + .+.+.+.++.++ .+||||||||. |+ +.+|++|
T Consensus 77 vFQ~~~LlPW~----Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lL 152 (248)
T COG1116 77 VFQEDALLPWL----TVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLL 152 (248)
T ss_pred EeccCcccchh----hHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEE
Confidence 99999987765 99999432 1 235677788777 88999999987 44 7899999
Q ss_pred EEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeC--CeE
Q 024032 201 LMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKA--GDS 243 (273)
Q Consensus 201 lLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~--G~i 243 (273)
|||||+++||.. +.+.++.++.++||++| .++|||++|.+ |+|
T Consensus 153 LlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i 211 (248)
T COG1116 153 LLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRI 211 (248)
T ss_pred EEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCcce
Confidence 999999999999 33556677778999999 45799999999 545
No 14
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.5e-41 Score=294.02 Aligned_cols=187 Identities=17% Similarity=0.247 Sum_probs=157.4
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC------C
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------S 138 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------~ 138 (273)
++++++++..| |...+ |++|||++++||+++|+||||||||||||+|+|+.+ .+|+|.++|++++. .
T Consensus 3 mL~v~~l~~~Y--G~~~~----L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~ 76 (237)
T COG0410 3 MLEVENLSAGY--GKIQA----LRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERA 76 (237)
T ss_pred ceeEEeEeecc--cceeE----EeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHH
Confidence 68999999988 44556 999999999999999999999999999999999999 99999999999975 3
Q ss_pred CccEEEEeccchhhhccCCcccccccccC-----C-----HHHHHH----------HHHHhcccCCHHHHHHH---Hh-c
Q 024032 139 SHTITMYMEEHNVMRSLQSGFCVYDSRGF-----N-----YNRVHE----------GLEELSSWMSEGVHHNQ---RC-L 194 (273)
Q Consensus 139 ~~~i~~v~q~~~~~~~~~~~~tv~en~~~-----~-----~~~~~~----------~l~~~~~~LSgGqkq~~---r~-l 194 (273)
+.-+++|+|-..+|+.+ ||.||... . ...+++ ..++.+.+|||||||.. |+ +
T Consensus 77 r~Gi~~VPegR~iF~~L----TVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm 152 (237)
T COG0410 77 RLGIAYVPEGRRIFPRL----TVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALM 152 (237)
T ss_pred hCCeEeCcccccchhhC----cHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHh
Confidence 46799999999986554 99999321 0 001222 33333389999999965 44 8
Q ss_pred CCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChhhHH
Q 024032 195 RSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPGLRK 260 (273)
Q Consensus 195 ~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~l~~ 260 (273)
.+|++|+|||||.||-|. +.+++++++.|.||++| ++|||.+||++|+|+..|+.+++.+++.+.+
T Consensus 153 ~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~~v~~ 232 (237)
T COG0410 153 SRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADPDVRE 232 (237)
T ss_pred cCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCHHHHH
Confidence 999999999999999999 56788887768899999 6789999999999999999999999988776
Q ss_pred Hh
Q 024032 261 CS 262 (273)
Q Consensus 261 ~~ 262 (273)
.|
T Consensus 233 ~y 234 (237)
T COG0410 233 AY 234 (237)
T ss_pred Hh
Confidence 65
No 15
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.4e-41 Score=298.01 Aligned_cols=173 Identities=21% Similarity=0.255 Sum_probs=144.9
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-------
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------- 137 (273)
+++++++++.|..++..+ .+|+++||+|++||+++|+|||||||||||++|.|+.+ ++|.|.++|+++..
T Consensus 1 ~i~~~~v~k~y~~~~~~~--~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~ 78 (226)
T COG1136 1 MIELKNVSKIYGLGGEKV--EALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELA 78 (226)
T ss_pred CcEEeeeEEEeccCCcce--EecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHH
Confidence 367999999998766543 34999999999999999999999999999999999999 99999999998863
Q ss_pred --CCccEEEEeccchhhhccCCcccccccccC-------C----HHHHHHHHHHhc----------ccCCHHHHHHH---
Q 024032 138 --SSHTITMYMEEHNVMRSLQSGFCVYDSRGF-------N----YNRVHEGLEELS----------SWMSEGVHHNQ--- 191 (273)
Q Consensus 138 --~~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~----~~~~~~~l~~~~----------~~LSgGqkq~~--- 191 (273)
.++++||+||+.+++ ..+||.||..+ . .+.+.+.++.++ .+||||||||+
T Consensus 79 ~~R~~~iGfvFQ~~nLl----~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIA 154 (226)
T COG1136 79 KLRRKKIGFVFQNFNLL----PDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIA 154 (226)
T ss_pred HHHHHhEEEECccCCCC----CCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHH
Confidence 356799999999974 45599999432 1 234455556555 68999999987
Q ss_pred Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeEe
Q 024032 192 RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKAGDSK 244 (273)
Q Consensus 192 r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i~ 244 (273)
|+ +.+|+++|.||||.+||.. +++++++++.|+|+|+| ..|||++.|.+|++.
T Consensus 155 RAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~ 221 (226)
T COG1136 155 RALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIE 221 (226)
T ss_pred HHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeee
Confidence 44 7899999999999999999 45677877779999999 568999999999943
No 16
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=3.2e-41 Score=339.96 Aligned_cols=219 Identities=17% Similarity=0.206 Sum_probs=180.8
Q ss_pred hhhhhhhhccchhhhhhhhHHHHHHHhchhhhc----c--CCCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEE
Q 024032 28 KFDECVKLKLDLPNVSTLTPRLRVLREMERLAL----I--APDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITI 101 (273)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~----~--~~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~ 101 (273)
.+..+...-..++.+..+.+|+.++++.+++.. . ...+.++++||+|+|+..++++ |+|+||+|++||.+
T Consensus 407 pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~I~~~nvsf~Y~~~~~~v----L~~isl~i~~Ge~v 482 (686)
T TIGR03797 407 AVTQLSNTLISILAVIPLWERAKPILEALPEVDEAKTDPGKLSGAIEVDRVTFRYRPDGPLI----LDDVSLQIEPGEFV 482 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcCCCCCCCceEEEEEEEEEcCCCCccc----eeeeEEEECCCCEE
Confidence 345566666788899999999999987654311 0 1134699999999997555667 99999999999999
Q ss_pred EEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCccccccccc----CCHHH
Q 024032 102 LLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSRG----FNYNR 171 (273)
Q Consensus 102 aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~~----~~~~~ 171 (273)
||+||||||||||+|+|+|+++ ++|+|.+||+++.+ +|+.+++++|++.+ |..|++||.. .++++
T Consensus 483 aIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~l-----f~gTI~eNi~~~~~~~~e~ 557 (686)
T TIGR03797 483 AIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRL-----MSGSIFENIAGGAPLTLDE 557 (686)
T ss_pred EEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCcc-----CcccHHHHHhcCCCCCHHH
Confidence 9999999999999999999999 99999999999874 67889999999984 4569999942 46778
Q ss_pred HHHHHHHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH---HHHHHHHhcCCc
Q 024032 172 VHEGLEELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK---SSPKYVLRRVDF 224 (273)
Q Consensus 172 ~~~~l~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~---~~l~~l~~~~g~ 224 (273)
+.++++.++ ..||||||||. |+ +++|++||||||||+||+. ...+.+.+. ++
T Consensus 558 i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~-~~ 636 (686)
T TIGR03797 558 AWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL-KV 636 (686)
T ss_pred HHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh-CC
Confidence 888887765 46999999986 55 8999999999999999999 233444443 68
Q ss_pred EEEEc-------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 225 AMVVS-------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 225 tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
|+|+| ..||+|++|++|++++.|+++++++..
T Consensus 637 T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~~ 675 (686)
T TIGR03797 637 TRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMARE 675 (686)
T ss_pred eEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhCC
Confidence 98888 558999999999999999999998643
No 17
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=3e-41 Score=334.42 Aligned_cols=216 Identities=14% Similarity=0.076 Sum_probs=175.9
Q ss_pred hhhhhhhccchhhhhhhhHHHHHHHhchhhhc------cC--CCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcE
Q 024032 29 FDECVKLKLDLPNVSTLTPRLRVLREMERLAL------IA--PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVIT 100 (273)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~------~~--~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~ 100 (273)
+..+......++++.++.+|+.++++.++... .. ....++++||+|.|.. ++++ |+|+||+|++|++
T Consensus 304 l~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~~~~-~~~v----L~~i~l~i~~G~~ 378 (588)
T PRK11174 304 LRDLGTFYHAKAQAVGAAESLVTFLETPLAHPQQGEKELASNDPVTIEAEDLEILSPD-GKTL----AGPLNFTLPAGQR 378 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccccCCCCCceEEEEeeEEeccC-CCee----eeeeEEEEcCCCE
Confidence 44555555677889999999999987653210 01 1235999999986643 4567 9999999999999
Q ss_pred EEEEcCCCChHHHHHHHHhhCccCccEEEECCeeCCC-----CCccEEEEeccchhhhccCCcccccccc-----cCCHH
Q 024032 101 ILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSR-----GFNYN 170 (273)
Q Consensus 101 ~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~-----~~~~~ 170 (273)
+||+||||||||||+++|+|+++++|+|.++|.++.+ +++.+++++|++.+ |+.|++||. ..+++
T Consensus 379 vaIvG~SGsGKSTL~~lL~g~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~L-----F~~TI~eNI~~g~~~~~~e 453 (588)
T PRK11174 379 IALVGPSGAGKTSLLNALLGFLPYQGSLKINGIELRELDPESWRKHLSWVGQNPQL-----PHGTLRDNVLLGNPDASDE 453 (588)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCcEEEECCEecccCCHHHHHhheEEecCCCcC-----CCcCHHHHhhcCCCCCCHH
Confidence 9999999999999999999999989999999999874 57889999999984 556999993 35677
Q ss_pred HHHHHHHHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH--H----HHHHHHh
Q 024032 171 RVHEGLEELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK--S----SPKYVLR 220 (273)
Q Consensus 171 ~~~~~l~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~--~----~l~~l~~ 220 (273)
++.++++.++ ..||||||||. |+ +++|++||||||||+||+. . .+.++.+
T Consensus 454 ei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~ 533 (588)
T PRK11174 454 QLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASR 533 (588)
T ss_pred HHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhC
Confidence 8888877655 56999999986 55 8999999999999999999 2 2333332
Q ss_pred cCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 221 RVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 221 ~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
++|+|+| ..||+|++|++|++++.|++++++++.
T Consensus 534 --~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~G~~~eL~~~~ 574 (588)
T PRK11174 534 --RQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQGDYAELSQAG 574 (588)
T ss_pred --CCEEEEEecChHHHHhCCEEEEEeCCeEeecCCHHHHHhcc
Confidence 7898888 458999999999999999999998653
No 18
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-41 Score=300.65 Aligned_cols=183 Identities=20% Similarity=0.219 Sum_probs=156.8
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCC------CC
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSG------NS 138 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~------~~ 138 (273)
.+++++++|+|..+ ..+ |+++||+|++|+.++|+||||||||||+++++|+++ ++|.|.++|.++. ..
T Consensus 3 ~i~~~~l~~~y~~~-~~~----l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~ 77 (235)
T COG1122 3 MIEAENLSFRYPGR-KAA----LKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLEL 77 (235)
T ss_pred eEEEEEEEEEcCCC-cee----eeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHh
Confidence 68899999999765 556 999999999999999999999999999999999999 9999999998854 47
Q ss_pred CccEEEEeccchhhhccCCccccccc-------ccCCHHH----HHHHHHHhc---------ccCCHHHHHHHHh----c
Q 024032 139 SHTITMYMEEHNVMRSLQSGFCVYDS-------RGFNYNR----VHEGLEELS---------SWMSEGVHHNQRC----L 194 (273)
Q Consensus 139 ~~~i~~v~q~~~~~~~~~~~~tv~en-------~~~~~~~----~~~~l~~~~---------~~LSgGqkq~~r~----l 194 (273)
++++|+|||++.. +++.-||.+. .+.+.++ +.++++.++ .+||||||||..+ +
T Consensus 78 ~~~vG~VfQnpd~---q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa 154 (235)
T COG1122 78 RQKVGLVFQNPDD---QLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLA 154 (235)
T ss_pred hcceEEEEECccc---ccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHH
Confidence 8999999999976 4777788874 3445444 455666666 7899999998743 6
Q ss_pred CCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 195 RSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 195 ~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
.+|++||||||||+||+. +.++++.++.|+|+|++ .+||++++|++|+++.+|++++++++.
T Consensus 155 ~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~~ 230 (235)
T COG1122 155 MGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDA 230 (235)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhhh
Confidence 899999999999999999 44677777657899999 568999999999999999999998765
No 19
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=2.5e-41 Score=341.78 Aligned_cols=219 Identities=17% Similarity=0.190 Sum_probs=180.8
Q ss_pred hhhhhhhhccchhhhhhhhHHHHHHHhchhhhc--------------cCCCCceEEEEEEEEeecCCeeeeccceeeeee
Q 024032 28 KFDECVKLKLDLPNVSTLTPRLRVLREMERLAL--------------IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGM 93 (273)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~--------------~~~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~ 93 (273)
.+..+...-..++.+..+.+|+.++++.+++.. ....+.++++|++|+|+..++++ |+|+||
T Consensus 425 p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~v----L~~isl 500 (710)
T TIGR03796 425 PVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPL----IENFSL 500 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccccccccccCCCCCCeEEEEEEEEecCCCCCCc----ccceeE
Confidence 345566666778899999999999987653211 01124699999999997655667 999999
Q ss_pred EEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCcccccccc--
Q 024032 94 DIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSR-- 165 (273)
Q Consensus 94 ~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~-- 165 (273)
+|++||.+||+||||||||||+|+|+|+++ ++|+|.+||.++.+ +|+.+++++|++.+ |..|++||.
T Consensus 501 ~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~l-----f~gTi~eNi~l 575 (710)
T TIGR03796 501 TLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFL-----FEGTVRDNLTL 575 (710)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChh-----hhccHHHHhhC
Confidence 999999999999999999999999999999 99999999999864 67899999999985 455999994
Q ss_pred ---cCCHHHHHHHHHHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH---HHH
Q 024032 166 ---GFNYNRVHEGLEELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK---SSP 215 (273)
Q Consensus 166 ---~~~~~~~~~~l~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~---~~l 215 (273)
..+++++.++++.++ ..||||||||. |+ +++|++||||||||+||+. ...
T Consensus 576 ~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~ 655 (710)
T TIGR03796 576 WDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIID 655 (710)
T ss_pred CCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHH
Confidence 345777877777665 56999999986 44 8999999999999999999 334
Q ss_pred HHHHhcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 216 KYVLRRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 216 ~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
+.+.+. ++|+|+| ..||+|++|++|++++.|+++++++..
T Consensus 656 ~~l~~~-~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll~~~ 702 (710)
T TIGR03796 656 DNLRRR-GCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAVG 702 (710)
T ss_pred HHHHhc-CCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHHHHcC
Confidence 445543 8999888 458999999999999999999998543
No 20
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=3.4e-41 Score=314.43 Aligned_cols=183 Identities=19% Similarity=0.270 Sum_probs=153.2
Q ss_pred ceEEEEEEEEeecCC--eeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----
Q 024032 66 LNELRHKFLSYRSGD--FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN----- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~--~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~----- 137 (273)
+++++|++++|+.++ .++ |+++||+|++||++||+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 1 mI~~~~lsk~y~~~~~~~~~----L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~ 76 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQA----LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSE 76 (343)
T ss_pred CEEEEEEEEEECCCCcceEE----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHH
Confidence 478999999996432 356 999999999999999999999999999999999999 99999999998864
Q ss_pred ---CCccEEEEeccchhhhccCCccccccccc-------CCH----HHHHHHHHHhc---------ccCCHHHHHHH---
Q 024032 138 ---SSHTITMYMEEHNVMRSLQSGFCVYDSRG-------FNY----NRVHEGLEELS---------SWMSEGVHHNQ--- 191 (273)
Q Consensus 138 ---~~~~i~~v~q~~~~~~~~~~~~tv~en~~-------~~~----~~~~~~l~~~~---------~~LSgGqkq~~--- 191 (273)
.++.++|++|++.++ ...||+||.. .+. +++.++++.++ .+||||||||.
T Consensus 77 l~~~r~~Ig~v~Q~~~l~----~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IA 152 (343)
T TIGR02314 77 LTKARRQIGMIFQHFNLL----SSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIA 152 (343)
T ss_pred HHHHhcCEEEEECCcccc----ccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHH
Confidence 256899999998763 4459999842 222 23556677765 68999999987
Q ss_pred Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 192 RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 192 r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
|+ +.+|++|||||||++||+. +.+++++++.|.|||++ ++||++++|++|++++.|++++++..+
T Consensus 153 RAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~~p 232 (343)
T TIGR02314 153 RALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHP 232 (343)
T ss_pred HHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHcCC
Confidence 44 7899999999999999999 44666766568999999 568999999999999999999998653
No 21
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=3.9e-41 Score=332.52 Aligned_cols=216 Identities=18% Similarity=0.186 Sum_probs=178.6
Q ss_pred hhhhhhhccchhhhhhhhHHHHHHHhchhhhc------cCCCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEE
Q 024032 29 FDECVKLKLDLPNVSTLTPRLRVLREMERLAL------IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITIL 102 (273)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~------~~~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~a 102 (273)
+..+...-..++.+.++.+|+.++++.++... ....+.++++|++|+|+. ++++ |+|+||++++||.+|
T Consensus 285 ~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~I~f~~vsf~y~~-~~~v----l~~is~~i~~Ge~va 359 (567)
T COG1132 285 ILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDPLKDTIGSIEFENVSFSYPG-KKPV----LKDISFSIEPGEKVA 359 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCCCCCCCeEEEEEEEEEcCC-CCcc----ccCceEEEcCCCEEE
Confidence 45556666777889999999999998755311 112356999999999964 4566 999999999999999
Q ss_pred EEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCcccccccc-----cCCHHH
Q 024032 103 LMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSR-----GFNYNR 171 (273)
Q Consensus 103 ivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~-----~~~~~~ 171 (273)
||||||||||||+++|.|+++ ++|+|.+||+++++ +|+++++|+|++.+ |..||++|. ..++++
T Consensus 360 iVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~L-----F~~TI~~NI~~g~~~at~ee 434 (567)
T COG1132 360 IVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLL-----FSGTIRENIALGRPDATDEE 434 (567)
T ss_pred EECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEccccee-----ecccHHHHHhcCCCCCCHHH
Confidence 999999999999999999999 99999999999874 68899999999985 446999993 246678
Q ss_pred HHHHHHHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhc
Q 024032 172 VHEGLEELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRR 221 (273)
Q Consensus 172 ~~~~l~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~ 221 (273)
+.++++.++ ..||||||||. |+ +++|++||||||||+||+. +.+..+.+
T Consensus 435 i~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~- 513 (567)
T COG1132 435 IEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLK- 513 (567)
T ss_pred HHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhc-
Confidence 888887764 57999999986 55 8999999999999999999 22333443
Q ss_pred CCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 222 VDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 222 ~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
++|+++| ..||+|+||++|++++.|+|+++++..
T Consensus 514 -~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~~ 554 (567)
T COG1132 514 -GRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAKG 554 (567)
T ss_pred -CCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHcC
Confidence 6677777 459999999999999999999998754
No 22
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.1e-41 Score=295.42 Aligned_cols=186 Identities=18% Similarity=0.257 Sum_probs=155.7
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC------C
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------S 138 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------~ 138 (273)
+++++|+++.|..+...- .+|++|||+|.+||++||+|+||||||||.++|+|+.+ ++|+|.++|++... .
T Consensus 3 ~l~v~nl~~~y~~~~~~~--~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~ 80 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAF--HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAF 80 (252)
T ss_pred eEEEeceEEEecCCcchh--hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhh
Confidence 689999999997654322 34999999999999999999999999999999999999 99999999987654 4
Q ss_pred CccEEEEeccchhhhccCCcccccccc-------cC--CHHHHHHHHHHhc----------ccCCHHHHHHH---Hh-cC
Q 024032 139 SHTITMYMEEHNVMRSLQSGFCVYDSR-------GF--NYNRVHEGLEELS----------SWMSEGVHHNQ---RC-LR 195 (273)
Q Consensus 139 ~~~i~~v~q~~~~~~~~~~~~tv~en~-------~~--~~~~~~~~l~~~~----------~~LSgGqkq~~---r~-l~ 195 (273)
++.+-+|||++..- +.+..||.+.. +. ..+++.++++.++ .+|||||+||. || ..
T Consensus 81 ~~~VQmVFQDp~~S--LnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~ 158 (252)
T COG1124 81 YRPVQMVFQDPYSS--LNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIP 158 (252)
T ss_pred ccceeEEecCCccc--cCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhcc
Confidence 67899999998632 23344666542 11 2345778888887 78999999987 44 67
Q ss_pred CCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccC
Q 024032 196 SDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSA 255 (273)
Q Consensus 196 ~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~ 255 (273)
+|++||||||||+||+. +++.++.++++.|.|+| .+||||+||++|++++.++.++++..
T Consensus 159 ~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~ 232 (252)
T COG1124 159 EPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH 232 (252)
T ss_pred CCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcC
Confidence 99999999999999999 45677888889999999 67999999999999999999999865
No 23
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-41 Score=297.52 Aligned_cols=187 Identities=18% Similarity=0.236 Sum_probs=159.3
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCC------
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNS------ 138 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~------ 138 (273)
++++++++++| |+-.+ ++||||++++||++|||||||||||||+|+|+|+|+ ++|+|.++|+++..+
T Consensus 4 lL~v~~l~k~F--GGl~A----l~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~ia 77 (250)
T COG0411 4 LLEVRGLSKRF--GGLTA----VNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIA 77 (250)
T ss_pred eeeeccceeec--CCEEE----EeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHH
Confidence 57899999998 66666 999999999999999999999999999999999999 999999999999753
Q ss_pred CccEEEEeccchhhhccCCcccccccccC-------------------C----HHHHHHHHHHhc---------ccCCHH
Q 024032 139 SHTITMYMEEHNVMRSLQSGFCVYDSRGF-------------------N----YNRVHEGLEELS---------SWMSEG 186 (273)
Q Consensus 139 ~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------------------~----~~~~~~~l~~~~---------~~LSgG 186 (273)
+.-++.-||...+|+ .+||.||... . .+++.+.|+.++ .+||+|
T Consensus 78 r~Gi~RTFQ~~rlF~----~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG 153 (250)
T COG0411 78 RLGIARTFQITRLFP----GLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYG 153 (250)
T ss_pred hccceeecccccccC----CCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChh
Confidence 345788899998754 5599999211 1 123445566665 789999
Q ss_pred HHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecC
Q 024032 187 VHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDA 248 (273)
Q Consensus 187 qkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~ 248 (273)
||++. |+ +.+|++|+||||++||.+. +.++++.++.|.||++| ++||||+||+.|+++++|+
T Consensus 154 ~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~ 233 (250)
T COG0411 154 QQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGT 233 (250)
T ss_pred HhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCC
Confidence 98875 44 7999999999999999999 45777887668999999 6799999999999999999
Q ss_pred hhhhccChhhHHHh
Q 024032 249 TKRLFSAPGLRKCS 262 (273)
Q Consensus 249 ~~~l~~~~~l~~~~ 262 (273)
|+++.++|.+.++|
T Consensus 234 P~eV~~dp~VieAY 247 (250)
T COG0411 234 PEEVRNNPRVIEAY 247 (250)
T ss_pred HHHHhcCHHhHHHh
Confidence 99999999988887
No 24
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=1.1e-40 Score=337.37 Aligned_cols=221 Identities=16% Similarity=0.168 Sum_probs=179.3
Q ss_pred hhhhhhhhccchhhhhhhhHHHHHHHhchhhhc------c-CCCCceEEEEEEEEeecC-CeeeeccceeeeeeEEcCCc
Q 024032 28 KFDECVKLKLDLPNVSTLTPRLRVLREMERLAL------I-APDGLNELRHKFLSYRSG-DFWIPIGGIQKGGMDIPPVI 99 (273)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~------~-~~~~~i~~~~v~~~y~~g-~~~v~~~~L~~is~~i~~Ge 99 (273)
.+..+.....+++++..+.+|+.++++.++... + ...+.++++||+|+|+.. ++++ |+|+||+|++||
T Consensus 433 ~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~I~~~nVsf~Y~~~~~~~v----L~~isl~i~~Ge 508 (711)
T TIGR00958 433 AVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGTLAPLNLEGLIEFQDVSFSYPNRPDVPV----LKGLTFTLHPGE 508 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCeEEEEEEEEECCCCCCCcc----ccCceEEEcCCC
Confidence 344556666778889999999999987654211 1 123469999999999743 3556 999999999999
Q ss_pred EEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCccccccccc-----CC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSRG-----FN 168 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~~-----~~ 168 (273)
++||+||||||||||+++|+|+++ ++|+|.+||+++.+ +++++++++|++.+ |..|++||.. .+
T Consensus 509 ~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~l-----F~gTIreNI~~g~~~~~ 583 (711)
T TIGR00958 509 VVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVL-----FSGSVRENIAYGLTDTP 583 (711)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccc-----cccCHHHHHhcCCCCCC
Confidence 999999999999999999999999 99999999999864 56789999999984 5569999942 35
Q ss_pred HHHHHHHHHHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH--HHHHHHHhcC
Q 024032 169 YNRVHEGLEELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK--SSPKYVLRRV 222 (273)
Q Consensus 169 ~~~~~~~l~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~--~~l~~l~~~~ 222 (273)
++++.++++.++ .+||||||||. |+ +++|++||||||||+||+. +.+.+.....
T Consensus 584 ~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~~~~~~ 663 (711)
T TIGR00958 584 DEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQESRSRA 663 (711)
T ss_pred HHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHHhhccC
Confidence 677777777654 46999999987 44 8999999999999999998 3344433333
Q ss_pred CcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccChh
Q 024032 223 DFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSAPG 257 (273)
Q Consensus 223 g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~~ 257 (273)
++|+|+| ..||+|++|++|+|++.|+|++++++..
T Consensus 664 ~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~~~~ 705 (711)
T TIGR00958 664 SRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQG 705 (711)
T ss_pred CCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHhCCC
Confidence 7899988 4589999999999999999999986543
No 25
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=3.7e-40 Score=313.01 Aligned_cols=192 Identities=15% Similarity=0.218 Sum_probs=162.6
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CC
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SS 139 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~ 139 (273)
.++++|++++|. ++.+ |+++||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++.. .+
T Consensus 3 ~L~~~nls~~y~--~~~v----L~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~ 76 (402)
T PRK09536 3 MIDVSDLSVEFG--DTTV----LDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAAS 76 (402)
T ss_pred eEEEeeEEEEEC--CEEE----EEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHh
Confidence 589999999984 5667 999999999999999999999999999999999999 99999999998753 45
Q ss_pred ccEEEEeccchhhhccCCcccccccccC---------------CHHHHHHHHHHhc---------ccCCHHHHHHH---H
Q 024032 140 HTITMYMEEHNVMRSLQSGFCVYDSRGF---------------NYNRVHEGLEELS---------SWMSEGVHHNQ---R 192 (273)
Q Consensus 140 ~~i~~v~q~~~~~~~~~~~~tv~en~~~---------------~~~~~~~~l~~~~---------~~LSgGqkq~~---r 192 (273)
+++++++|++.+ ++.+|++||..+ +.+.+.++++.++ .+||||||||. |
T Consensus 77 ~~ig~v~q~~~l----~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IAr 152 (402)
T PRK09536 77 RRVASVPQDTSL----SFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLAR 152 (402)
T ss_pred cceEEEccCCCC----CCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHH
Confidence 679999998775 456688887311 1234666777766 68999999987 3
Q ss_pred h-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChh
Q 024032 193 C-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPG 257 (273)
Q Consensus 193 ~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~ 257 (273)
+ +++|++|||||||++||+. +.+++++++ |.|||++ ++||++++|++|+++..|+++++++.+.
T Consensus 153 AL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~-g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~~~~ 231 (402)
T PRK09536 153 ALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDD-GKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTADT 231 (402)
T ss_pred HHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhCcHH
Confidence 3 7999999999999999998 345666654 8899998 5689999999999999999999999999
Q ss_pred hHHHhCCceEE
Q 024032 258 LRKCSKISFCI 268 (273)
Q Consensus 258 l~~~~~~~~~~ 268 (273)
+.+.|+.+..+
T Consensus 232 l~~~~~~~~~v 242 (402)
T PRK09536 232 LRAAFDARTAV 242 (402)
T ss_pred HHHHhCCceEE
Confidence 99999876543
No 26
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=4.4e-41 Score=284.64 Aligned_cols=173 Identities=19% Similarity=0.247 Sum_probs=148.3
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-------
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------- 137 (273)
+|+|++|++.|+.| ..+ |+||||+|++||++-|+||||||||||+|+|.+..+ ++|+|+++|.++..
T Consensus 1 mI~f~~V~k~Y~~g-~~a----L~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP 75 (223)
T COG2884 1 MIRFENVSKAYPGG-REA----LRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIP 75 (223)
T ss_pred CeeehhhhhhcCCC-chh----hhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccc
Confidence 47899999999876 545 999999999999999999999999999999999999 99999999999863
Q ss_pred -CCccEEEEeccchhhhccCCcccccccccC-------C----HHHHHHHHHHhc---------ccCCHHHHHHH---Hh
Q 024032 138 -SSHTITMYMEEHNVMRSLQSGFCVYDSRGF-------N----YNRVHEGLEELS---------SWMSEGVHHNQ---RC 193 (273)
Q Consensus 138 -~~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~----~~~~~~~l~~~~---------~~LSgGqkq~~---r~ 193 (273)
+|++||+|||+..++ ...||+||..+ . .+++.++|+.++ .+||||||||. |+
T Consensus 76 ~LRR~IGvVFQD~rLL----~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARA 151 (223)
T COG2884 76 FLRRQIGVVFQDFRLL----PDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARA 151 (223)
T ss_pred hhhheeeeEeeecccc----ccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHH
Confidence 678999999999974 45599999533 2 345667777777 78999999987 44
Q ss_pred -cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEce--------eCCEEEEEeCCeEeeecC
Q 024032 194 -LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVSN--------IAEIYKALKAGDSKPLDA 248 (273)
Q Consensus 194 -l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv~--------~ad~i~vl~~G~i~~~g~ 248 (273)
+.+|++||.||||.+|||. .++.++++. |+||+|++ .-.|++.+++|+++.+..
T Consensus 152 iV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~-GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 152 IVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRL-GTTVLMATHDLELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhc-CcEEEEEeccHHHHHhccCcEEEEeCCEEEeccc
Confidence 7899999999999999999 446677765 99999993 347899999999987654
No 27
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=1.3e-40 Score=335.79 Aligned_cols=216 Identities=16% Similarity=0.167 Sum_probs=177.9
Q ss_pred hhhhhhhhccchhhhhhhhHHHHHHHhchhhhc--------cCCCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCc
Q 024032 28 KFDECVKLKLDLPNVSTLTPRLRVLREMERLAL--------IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVI 99 (273)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~--------~~~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge 99 (273)
.+..+...-..++.+..+.+|+.++++.+++.. ....+.++++|++|+|+.+++++ |+|+||+|++||
T Consensus 417 p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~v----L~~i~l~i~~G~ 492 (694)
T TIGR03375 417 PLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEGTRFLHRPRLQGEIEFRNVSFAYPGQETPA----LDNVSLTIRPGE 492 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCccceEEEEEEEEEeCCCCccc----eeeeeEEECCCC
Confidence 344555666778899999999999988654311 01124699999999997555567 999999999999
Q ss_pred EEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCcccccccc-----cCC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSR-----GFN 168 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~-----~~~ 168 (273)
.+||+||||||||||+|+|+|+++ ++|+|.++|.++.+ +|+.+++++|++.+ |..|++||. ..+
T Consensus 493 ~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~l-----f~~TI~eNi~~~~~~~~ 567 (694)
T TIGR03375 493 KVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRL-----FYGTLRDNIALGAPYAD 567 (694)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhh-----hhhhHHHHHhCCCCCCC
Confidence 999999999999999999999999 99999999999864 57889999999985 455999983 356
Q ss_pred HHHHHHHHHHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHH
Q 024032 169 YNRVHEGLEELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYV 218 (273)
Q Consensus 169 ~~~~~~~l~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l 218 (273)
++++.++++.++ ..||||||||. |+ +++|++||||||||+||+. +.+.++
T Consensus 568 ~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~ 647 (694)
T TIGR03375 568 DEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRW 647 (694)
T ss_pred HHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 777877777665 46999999987 44 8999999999999999999 223344
Q ss_pred HhcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhcc
Q 024032 219 LRRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFS 254 (273)
Q Consensus 219 ~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~ 254 (273)
.+ ++|+|+| ..||+|++|++|++++.|+++++++
T Consensus 648 ~~--~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~ 688 (694)
T TIGR03375 648 LA--GKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLE 688 (694)
T ss_pred hC--CCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHH
Confidence 33 7888888 5689999999999999999999864
No 28
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-40 Score=309.63 Aligned_cols=183 Identities=15% Similarity=0.267 Sum_probs=154.2
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC---CCc
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---SSH 140 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---~~~ 140 (273)
..++++|++++|. +..+ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++.. .++
T Consensus 5 ~~l~~~~l~~~~~--~~~~----l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r 78 (351)
T PRK11432 5 NFVVLKNITKRFG--SNTV----IDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQR 78 (351)
T ss_pred cEEEEEeEEEEEC--CeEE----EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHC
Confidence 4799999999994 4566 999999999999999999999999999999999999 99999999998864 347
Q ss_pred cEEEEeccchhhhccCCcccccccccC-------C----HHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCC
Q 024032 141 TITMYMEEHNVMRSLQSGFCVYDSRGF-------N----YNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRS 196 (273)
Q Consensus 141 ~i~~v~q~~~~~~~~~~~~tv~en~~~-------~----~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~ 196 (273)
.+++++|++.+|++ +||+||..+ + .+++.++++.++ .+||||||||. |+ +.+
T Consensus 79 ~ig~vfQ~~~lfp~----~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~ 154 (351)
T PRK11432 79 DICMVFQSYALFPH----MSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILK 154 (351)
T ss_pred CEEEEeCCcccCCC----CCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 89999999987544 599998432 2 234555666655 78999999987 34 789
Q ss_pred CCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChh
Q 024032 197 DDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPG 257 (273)
Q Consensus 197 p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~ 257 (273)
|++|||||||++||+. ..++++.++.|.|+|+| .+||+|++|++|++++.|++++++..|.
T Consensus 155 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p~ 229 (351)
T PRK11432 155 PKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPA 229 (351)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 9999999999999999 33556666568999998 5689999999999999999999987654
No 29
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=6.4e-42 Score=291.85 Aligned_cols=186 Identities=16% Similarity=0.193 Sum_probs=159.9
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC------C
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------S 138 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------~ 138 (273)
.+.++|+.++| +++.| +++|||+|++||++||+|||||||||.+.++.|+.+ ++|.|.++|.+++. .
T Consensus 4 ~L~a~~l~K~y--~kr~V----v~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RA 77 (243)
T COG1137 4 TLVAENLAKSY--KKRKV----VNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRA 77 (243)
T ss_pred EEEehhhhHhh--CCeee----eeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHh
Confidence 57889999998 45777 999999999999999999999999999999999999 99999999999975 2
Q ss_pred CccEEEEeccchhhhccCCcccccccccC-------C------HHHHHHHHHHhc---------ccCCHHHHHHH---Hh
Q 024032 139 SHTITMYMEEHNVMRSLQSGFCVYDSRGF-------N------YNRVHEGLEELS---------SWMSEGVHHNQ---RC 193 (273)
Q Consensus 139 ~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~------~~~~~~~l~~~~---------~~LSgGqkq~~---r~ 193 (273)
|.-++|.+|++..|..+ ||.||... + ..++++.++.+. ..||||||+|. |+
T Consensus 78 rlGigYLpQE~SIFr~L----tV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARa 153 (243)
T COG1137 78 RLGIGYLPQEASIFRKL----TVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARA 153 (243)
T ss_pred hcCcccccccchHhhcC----cHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHH
Confidence 45689999999987665 99999311 1 223446666665 78999999876 44
Q ss_pred -cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChhh
Q 024032 194 -LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPGL 258 (273)
Q Consensus 194 -l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~l 258 (273)
+.+|+++||||||+|+||. .+++.|..+ |..|+|+ .+|||.+++.+|++.++|+++++.+++..
T Consensus 154 La~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~r-giGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n~~V 232 (243)
T COG1137 154 LAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDR-GIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNEDV 232 (243)
T ss_pred HhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhC-CceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcChhh
Confidence 7899999999999999999 445667665 9999999 67899999999999999999999999999
Q ss_pred HHHh
Q 024032 259 RKCS 262 (273)
Q Consensus 259 ~~~~ 262 (273)
.++|
T Consensus 233 r~~Y 236 (243)
T COG1137 233 RRVY 236 (243)
T ss_pred hhhc
Confidence 8887
No 30
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-40 Score=310.37 Aligned_cols=183 Identities=20% Similarity=0.266 Sum_probs=153.6
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC---CCcc
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---SSHT 141 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---~~~~ 141 (273)
.++++|++++|. +++.+ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++.. .++.
T Consensus 3 ~l~i~~l~~~~~-~~~~~----l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ 77 (356)
T PRK11650 3 GLKLQAVRKSYD-GKTQV----IKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRD 77 (356)
T ss_pred EEEEEeEEEEeC-CCCEE----EeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCC
Confidence 589999999994 23556 999999999999999999999999999999999999 99999999998864 3467
Q ss_pred EEEEeccchhhhccCCcccccccccC-------CH----HHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCC
Q 024032 142 ITMYMEEHNVMRSLQSGFCVYDSRGF-------NY----NRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSD 197 (273)
Q Consensus 142 i~~v~q~~~~~~~~~~~~tv~en~~~-------~~----~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p 197 (273)
++|++|++.+|+ .+||+||..+ +. +++.++++.++ .+||||||||. |+ +.+|
T Consensus 78 ig~v~Q~~~lfp----~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P 153 (356)
T PRK11650 78 IAMVFQNYALYP----HMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREP 153 (356)
T ss_pred EEEEeCCccccC----CCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 999999998654 4599998432 21 33556666665 68999999987 44 7899
Q ss_pred CEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChh
Q 024032 198 DCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPG 257 (273)
Q Consensus 198 ~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~ 257 (273)
++|||||||++||+. ..++++.++.|.|+|+| .+||++++|++|++++.|+++++++.|.
T Consensus 154 ~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p~ 227 (356)
T PRK11650 154 AVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKPA 227 (356)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCCc
Confidence 999999999999999 33556666568999999 5689999999999999999999987653
No 31
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.1e-41 Score=301.57 Aligned_cols=189 Identities=17% Similarity=0.249 Sum_probs=157.4
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCe---eCCC---C
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQT---SSGN---S 138 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~---~i~~---~ 138 (273)
.|+++++++.|. ...+ ++|||++|+.||.+|++|||||||||||++|+|+.. ++|.|.++|+ |.+. .
T Consensus 2 ~i~i~~~~~~~~--~~~a----~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~ 75 (345)
T COG1118 2 SIRINNVKKRFG--AFGA----LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVR 75 (345)
T ss_pred ceeehhhhhhcc--cccc----cccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchh
Confidence 467888888774 4445 999999999999999999999999999999999999 9999999999 5544 3
Q ss_pred CccEEEEeccchhhhccCCcccccccccC-------------CHHHHHHHHHHhc---------ccCCHHHHHHH---Hh
Q 024032 139 SHTITMYMEEHNVMRSLQSGFCVYDSRGF-------------NYNRVHEGLEELS---------SWMSEGVHHNQ---RC 193 (273)
Q Consensus 139 ~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------------~~~~~~~~l~~~~---------~~LSgGqkq~~---r~ 193 (273)
.++||++||+..+|+++ ||++|..+ .+.++.+.|+.+. .+||||||||. |+
T Consensus 76 ~R~VGfvFQ~YALF~Hm----tVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARA 151 (345)
T COG1118 76 DRKVGFVFQHYALFPHM----TVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARA 151 (345)
T ss_pred hcceeEEEechhhcccc----hHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHH
Confidence 47899999999986655 99999433 1334555666554 78999999987 44
Q ss_pred -cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChhh
Q 024032 194 -LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPGL 258 (273)
Q Consensus 194 -l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~l 258 (273)
+.+|++||||||+++||.. .-++++..+.|.|+++| ++||||++|++|+|...|++.+++..|..
T Consensus 152 LA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~~P~s 231 (345)
T COG1118 152 LAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDHPAS 231 (345)
T ss_pred hhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhcCCCc
Confidence 6899999999999999999 33566777778888888 67899999999999999999999988876
Q ss_pred HHHhCC
Q 024032 259 RKCSKI 264 (273)
Q Consensus 259 ~~~~~~ 264 (273)
..+|+.
T Consensus 232 ~fV~~f 237 (345)
T COG1118 232 RFVARF 237 (345)
T ss_pred cceecc
Confidence 665553
No 32
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=2.5e-40 Score=327.36 Aligned_cols=224 Identities=14% Similarity=0.197 Sum_probs=179.2
Q ss_pred hhhhhhhhccchhhhhhhhHHHHHHHhchhhhc------cCCCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEE
Q 024032 28 KFDECVKLKLDLPNVSTLTPRLRVLREMERLAL------IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITI 101 (273)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~------~~~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~ 101 (273)
....+......++.+..+.+|+.++++.++... ....+.++++|++|+|+.+++++ |+++||+|++|+.+
T Consensus 297 pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~y~~~~~~i----l~~i~l~i~~G~~~ 372 (582)
T PRK11176 297 PLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEGKRVIERAKGDIEFRNVTFTYPGKEVPA----LRNINFKIPAGKTV 372 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCcCCCCCCCeEEEEEEEEecCCCCCcc----ccCceEEeCCCCEE
Confidence 344555556677788889999999887553211 11124699999999997555667 99999999999999
Q ss_pred EEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCccccccccc------CCH
Q 024032 102 LLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSRG------FNY 169 (273)
Q Consensus 102 aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~~------~~~ 169 (273)
||+||||||||||+++|+|+++ ++|+|.++|.++.+ +++.++|++|++.+ |+.|++||.. .++
T Consensus 373 aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l-----f~~Ti~~Ni~~~~~~~~~~ 447 (582)
T PRK11176 373 ALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHL-----FNDTIANNIAYARTEQYSR 447 (582)
T ss_pred EEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCcee-----ecchHHHHHhcCCCCCCCH
Confidence 9999999999999999999999 99999999999864 56789999999884 4569999833 356
Q ss_pred HHHHHHHHHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHH
Q 024032 170 NRVHEGLEELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVL 219 (273)
Q Consensus 170 ~~~~~~l~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~ 219 (273)
++++++++.++ ..||||||||. |+ +++|++|||||||++||+. +.+..+.
T Consensus 448 ~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~ 527 (582)
T PRK11176 448 EQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ 527 (582)
T ss_pred HHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh
Confidence 77887777665 45999999986 45 8999999999999999999 2233333
Q ss_pred hcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccC-hhhHHHh
Q 024032 220 RRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSA-PGLRKCS 262 (273)
Q Consensus 220 ~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~-~~l~~~~ 262 (273)
+ ++|+|+| +.||+|++|++|++++.|+++++++. +...+.+
T Consensus 528 ~--~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~~~~~y~~l~ 576 (582)
T PRK11176 528 K--NRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQNGVYAQLH 576 (582)
T ss_pred C--CCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHhCCChHHHHH
Confidence 2 7898888 56899999999999999999999854 3344443
No 33
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2.8e-40 Score=302.42 Aligned_cols=180 Identities=17% Similarity=0.229 Sum_probs=153.0
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC----CCc
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN----SSH 140 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~----~~~ 140 (273)
.++++|++++|.. ++++ |++|||+|++|+++||+||||||||||+|+|+|+++ ++|+|.++|.+... .++
T Consensus 4 ~i~~~~l~k~~~~-~~~~----l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~ 78 (293)
T COG1131 4 VIEVRNLTKKYGG-DKTA----LDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRR 78 (293)
T ss_pred eeeecceEEEeCC-CCEE----EeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHh
Confidence 5788999999942 4666 999999999999999999999999999999999999 99999999998753 567
Q ss_pred cEEEEeccchhhhccCCcccccccc-------cC----CHHHHHHHHHHhc---------ccCCHHHHHHH----HhcCC
Q 024032 141 TITMYMEEHNVMRSLQSGFCVYDSR-------GF----NYNRVHEGLEELS---------SWMSEGVHHNQ----RCLRS 196 (273)
Q Consensus 141 ~i~~v~q~~~~~~~~~~~~tv~en~-------~~----~~~~~~~~l~~~~---------~~LSgGqkq~~----r~l~~ 196 (273)
++||++|++.+ +..+|++||. +. ..+.+++.++.++ ..||+|||||. .++++
T Consensus 79 ~igy~~~~~~~----~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~ 154 (293)
T COG1131 79 RIGYVPQEPSL----YPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHD 154 (293)
T ss_pred heEEEccCCCC----CccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcC
Confidence 89999999986 4455999983 21 2456778888877 56999999987 22899
Q ss_pred CCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhcc
Q 024032 197 DDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFS 254 (273)
Q Consensus 197 p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~ 254 (273)
|++|||||||+||||. +.++.++++.+.||+++ .+||+|++|++|++++.|+++++..
T Consensus 155 P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~ 226 (293)
T COG1131 155 PELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKE 226 (293)
T ss_pred CCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 9999999999999999 45677777634899999 5599999999999999999888643
No 34
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=3.3e-40 Score=309.07 Aligned_cols=182 Identities=14% Similarity=0.247 Sum_probs=154.4
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC---CCcc
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---SSHT 141 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---~~~~ 141 (273)
.++++|++++|. ++.+ |+++||++++||+++|+|||||||||||++|+|+++ ++|+|.++|+++.. .++.
T Consensus 4 ~l~~~~l~~~~~--~~~~----l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ 77 (353)
T TIGR03265 4 YLSIDNIRKRFG--AFTA----LKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRD 77 (353)
T ss_pred EEEEEEEEEEeC--CeEE----EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCC
Confidence 589999999994 4566 999999999999999999999999999999999999 99999999998864 3567
Q ss_pred EEEEeccchhhhccCCcccccccccC-------C----HHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCC
Q 024032 142 ITMYMEEHNVMRSLQSGFCVYDSRGF-------N----YNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSD 197 (273)
Q Consensus 142 i~~v~q~~~~~~~~~~~~tv~en~~~-------~----~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p 197 (273)
++|++|++.+|++ +||+||..+ + .+++.++++.++ .+||||||||. |+ +.+|
T Consensus 78 ig~v~Q~~~lfp~----~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P 153 (353)
T TIGR03265 78 YGIVFQSYALFPN----LTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSP 153 (353)
T ss_pred EEEEeCCcccCCC----CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 9999999987544 599998432 2 234566677665 77999999987 34 7899
Q ss_pred CEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChh
Q 024032 198 DCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPG 257 (273)
Q Consensus 198 ~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~ 257 (273)
++|||||||++||+. +.++++.++.|.|+|+| .+||++++|++|++++.|++++++..|.
T Consensus 154 ~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p~ 227 (353)
T TIGR03265 154 GLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPA 227 (353)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 999999999999999 33556666568999998 5689999999999999999999987664
No 35
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=1.8e-40 Score=279.49 Aligned_cols=179 Identities=21% Similarity=0.314 Sum_probs=152.4
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC---CCccE
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---SSHTI 142 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---~~~~i 142 (273)
+.+++|.++|.. .+ =..+++|+.||++||+||||||||||+|+|+|+.. .+|.|+++|++... ..+-+
T Consensus 2 l~L~~V~~~y~~--~~------~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPV 73 (231)
T COG3840 2 LALDDVRFSYGH--LP------MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPV 73 (231)
T ss_pred ccccceEEeeCc--ce------EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCCh
Confidence 567888888843 22 25688999999999999999999999999999998 99999999999864 56779
Q ss_pred EEEeccchhhhccCCcccccccccC-----------CHHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCC
Q 024032 143 TMYMEEHNVMRSLQSGFCVYDSRGF-----------NYNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDD 198 (273)
Q Consensus 143 ~~v~q~~~~~~~~~~~~tv~en~~~-----------~~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~ 198 (273)
+++||+.++|.++ ||.+|.++ ++++++.++.+++ .+||||||||. || +++-+
T Consensus 74 SmlFQEnNLFaHL----tV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~P 149 (231)
T COG3840 74 SMLFQENNLFAHL----TVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQP 149 (231)
T ss_pred hhhhhccccchhh----hhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCC
Confidence 9999999986654 99999432 3566777777777 88999999987 55 78889
Q ss_pred EEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChh
Q 024032 199 CALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPG 257 (273)
Q Consensus 199 iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~ 257 (273)
||+||||+|+|||. .++..++++.+.|++|| +++|+++++++|+|.+.|+.++++....
T Consensus 150 ilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~~ 222 (231)
T COG3840 150 ILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGKA 222 (231)
T ss_pred eEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccCC
Confidence 99999999999999 44677888889999999 5689999999999999999999986543
No 36
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=4.1e-40 Score=332.93 Aligned_cols=219 Identities=17% Similarity=0.185 Sum_probs=176.7
Q ss_pred hhhhhhhhccchhhhhhhhHHHHHHHhchhhhc--------cCCCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCc
Q 024032 28 KFDECVKLKLDLPNVSTLTPRLRVLREMERLAL--------IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVI 99 (273)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~--------~~~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge 99 (273)
.+..+...-..++.+..+.+|+.++++.+++.. ....+.++++|++|+|+. ++++ |+|+||+|++|+
T Consensus 427 pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~~~I~~~~vsf~y~~-~~~i----L~~isl~i~~G~ 501 (708)
T TIGR01193 427 PLENIINLQPKLQAARVANNRLNEVYLVDSEFINKKKRTELNNLNGDIVINDVSYSYGY-GSNI----LSDISLTIKMNS 501 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccCCCCCCCcEEEEEEEEEcCC-CCcc----eeceeEEECCCC
Confidence 445566666778889999999999987653211 111346999999999963 3556 999999999999
Q ss_pred EEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCccccccccc------C
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSRG------F 167 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~~------~ 167 (273)
.+||+||||||||||+++|+|+++ ++|+|+++|.++.+ +|+.+++++|++.+ |..|++||.. .
T Consensus 502 ~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~l-----f~gTI~eNi~l~~~~~~ 576 (708)
T TIGR01193 502 KTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYI-----FSGSILENLLLGAKENV 576 (708)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCcee-----hhHHHHHHHhccCCCCC
Confidence 999999999999999999999999 99999999998863 67889999999985 4559999842 3
Q ss_pred CHHHHHHHHHHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH--HH-HHHHHh
Q 024032 168 NYNRVHEGLEELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK--SS-PKYVLR 220 (273)
Q Consensus 168 ~~~~~~~~l~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~--~~-l~~l~~ 220 (273)
+++++.++++.++ ..||||||||. |+ +++|++|||||||++||+. +. .+.+.+
T Consensus 577 ~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~ 656 (708)
T TIGR01193 577 SQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLN 656 (708)
T ss_pred CHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 4667777777654 56999999986 55 8999999999999999999 22 233332
Q ss_pred cCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 221 RVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 221 ~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
..++|+|+| ..||+|++|++|++++.|+++++++..
T Consensus 657 ~~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~~~ 699 (708)
T TIGR01193 657 LQDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDRN 699 (708)
T ss_pred hcCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHHhcC
Confidence 237898888 568999999999999999999998543
No 37
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=9.4e-40 Score=300.61 Aligned_cols=181 Identities=14% Similarity=0.191 Sum_probs=150.6
Q ss_pred CCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC----
Q 024032 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---- 137 (273)
Q Consensus 63 ~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---- 137 (273)
+...++++|++++|. +..+ |+++||+|++||++||+||||||||||+++|+|+++ ++|+|+++|.++..
T Consensus 4 ~~~~i~i~~l~k~~~--~~~~----l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~ 77 (306)
T PRK13537 4 SVAPIDFRNVEKRYG--DKLV----VDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARH 77 (306)
T ss_pred CCceEEEEeEEEEEC--CeEE----EecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHH
Confidence 345799999999994 4556 999999999999999999999999999999999999 99999999998753
Q ss_pred CCccEEEEeccchhhhccCCccccccccc-------CCH----HHHHHHHHHhc---------ccCCHHHHHHH---Hh-
Q 024032 138 SSHTITMYMEEHNVMRSLQSGFCVYDSRG-------FNY----NRVHEGLEELS---------SWMSEGVHHNQ---RC- 193 (273)
Q Consensus 138 ~~~~i~~v~q~~~~~~~~~~~~tv~en~~-------~~~----~~~~~~l~~~~---------~~LSgGqkq~~---r~- 193 (273)
.+++++|++|++.+ +..+|++||.. .+. +++.++++.++ ..||+|||||. ++
T Consensus 78 ~~~~ig~v~q~~~~----~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL 153 (306)
T PRK13537 78 ARQRVGVVPQFDNL----DPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARAL 153 (306)
T ss_pred HHhcEEEEeccCcC----CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHH
Confidence 45789999999875 44569999832 222 23445566554 68999999986 33
Q ss_pred cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhcc
Q 024032 194 LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFS 254 (273)
Q Consensus 194 l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~ 254 (273)
+++|++|||||||+||||. +.++++.++ |+|||++ .+||+|++|++|++++.|+++++..
T Consensus 154 ~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~-g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 154 VNDPDVLVLDEPTTGLDPQARHLMWERLRSLLAR-GKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIE 227 (306)
T ss_pred hCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 8999999999999999999 345666554 8999999 5699999999999999999998854
No 38
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-40 Score=317.36 Aligned_cols=232 Identities=14% Similarity=0.166 Sum_probs=186.5
Q ss_pred ecchhhhhhhh-hhccchhhhhhhhHHHHHHHhchhhhccC------CCCceEEEEEEEEeecCCeeeeccceeeeeeEE
Q 024032 23 WRSAAKFDECV-KLKLDLPNVSTLTPRLRVLREMERLALIA------PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDI 95 (273)
Q Consensus 23 ~~~~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~~------~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i 95 (273)
++.-+.|..+. ....++.+..+++.|+.++.+.+++...+ ....++++||+|+|+....++ |+|+||++
T Consensus 286 f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~~~~~~~~~~~~~~l~~~~vsF~y~~~~~~~----L~~~~l~l 361 (573)
T COG4987 286 FAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTFPDEQTATTGQALELRNVSFTYPGQQTKA----LKNFNLTL 361 (573)
T ss_pred HHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccCCcccCCCccccCCccceeeeccceeecCCCccch----hhccceee
Confidence 34444455555 55577889999999999998766532111 123689999999998765567 99999999
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCccccccc-----
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDS----- 164 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en----- 164 (273)
++||.+||+|+||||||||+++|.|.++ ++|+|.++|.++.. ++..++++.|...+ |..|+++|
T Consensus 362 ~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hl-----F~~Tlr~NL~lA~ 436 (573)
T COG4987 362 AQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHL-----FSGTLRDNLRLAN 436 (573)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHH-----HHHHHHHHHhhcC
Confidence 9999999999999999999999999999 99999999998864 45578889998885 45599998
Q ss_pred ccCCHHHHHHHHHHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH---HHHHH
Q 024032 165 RGFNYNRVHEGLEELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK---SSPKY 217 (273)
Q Consensus 165 ~~~~~~~~~~~l~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~---~~l~~ 217 (273)
++.+++++.+++++++ ..|||||+||. |+ +++.+++||||||.|||+. +.+..
T Consensus 437 ~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~l 516 (573)
T COG4987 437 PDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLAL 516 (573)
T ss_pred CCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHH
Confidence 4567888999998887 56999999987 44 8999999999999999999 33333
Q ss_pred HH-hcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccC-hhhHHHhC
Q 024032 218 VL-RRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSA-PGLRKCSK 263 (273)
Q Consensus 218 l~-~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~-~~l~~~~~ 263 (273)
+. +-.|+|+|+| +.+|||+||++|+++++|++++++.+ +.+.+.|.
T Consensus 517 l~~~~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~Ll~~~g~~~~l~q 571 (573)
T COG4987 517 LFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLANNGRYKRLYQ 571 (573)
T ss_pred HHHHhcCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHhhhccccHHHHHhc
Confidence 22 1228999999 56899999999999999999999864 44555443
No 39
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.4e-40 Score=312.78 Aligned_cols=188 Identities=16% Similarity=0.205 Sum_probs=159.8
Q ss_pred CCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeCCC-----
Q 024032 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGN----- 137 (273)
Q Consensus 63 ~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i~~----- 137 (273)
..+.|+|+||+++|.. ++++ |+++||+|++||.+||+|+|||||||++|+|.+++.++|+|++||+++++
T Consensus 348 ~~~~I~F~dV~f~y~~-k~~i----L~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~S 422 (591)
T KOG0057|consen 348 FGGSIEFDDVHFSYGP-KRKV----LKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLES 422 (591)
T ss_pred CCCcEEEEeeEEEeCC-CCce----ecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHH
Confidence 3567999999999964 3447 99999999999999999999999999999999999999999999999874
Q ss_pred CCccEEEEeccchhhhccCCccccccc-----ccCCHHHHHHHHHHhc--------------------ccCCHHHHHHH-
Q 024032 138 SSHTITMYMEEHNVMRSLQSGFCVYDS-----RGFNYNRVHEGLEELS--------------------SWMSEGVHHNQ- 191 (273)
Q Consensus 138 ~~~~i~~v~q~~~~~~~~~~~~tv~en-----~~~~~~~~~~~l~~~~--------------------~~LSgGqkq~~- 191 (273)
+|+.||+|||+..+ |+.||..| +..+++++.++.++++ ..||||||||+
T Consensus 423 lR~~Ig~VPQd~~L-----FndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvs 497 (591)
T KOG0057|consen 423 LRQSIGVVPQDSVL-----FNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVS 497 (591)
T ss_pred hhhheeEeCCcccc-----cchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHH
Confidence 67889999999985 45588887 4457888888888776 56999999987
Q ss_pred --Hh-cCCCCEEEEcCcCCCCCHH---HHHHHHHh-cCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccChh
Q 024032 192 --RC-LRSDDCALMKNDAEIDDLK---SSPKYVLR-RVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSAPG 257 (273)
Q Consensus 192 --r~-l~~p~iLlLDEPts~LD~~---~~l~~l~~-~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~~ 257 (273)
|+ +++|+|+++|||||+||.. ++++.+.. ..++|+|+| ..+|+|+++++|++.+.|++++++....
T Consensus 498 laRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~~s~ 577 (591)
T KOG0057|consen 498 LARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLAPSE 577 (591)
T ss_pred HHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhhhhh
Confidence 55 8999999999999999999 33443332 238999999 5689999999999999999999998444
Q ss_pred hHH
Q 024032 258 LRK 260 (273)
Q Consensus 258 l~~ 260 (273)
+..
T Consensus 578 ~~~ 580 (591)
T KOG0057|consen 578 LYA 580 (591)
T ss_pred HHH
Confidence 433
No 40
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=8.4e-40 Score=323.78 Aligned_cols=218 Identities=15% Similarity=0.156 Sum_probs=176.8
Q ss_pred hhhhhhhccchhhhhhhhHHHHHHHhchhhhc-------cCCCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEE
Q 024032 29 FDECVKLKLDLPNVSTLTPRLRVLREMERLAL-------IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITI 101 (273)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-------~~~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~ 101 (273)
+..+...-..++++.++.+|+.++++.++... ....+.++++|++|+|+.+++++ |+|+||++++|+++
T Consensus 294 ~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~i----l~~i~~~i~~G~~~ 369 (574)
T PRK11160 294 LMPVAGAFQHLGQVIASARRINEITEQKPEVTFPTTSTAAADQVSLTLNNVSFTYPDQPQPV----LKGLSLQIKAGEKV 369 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcccCCCCCCCeEEEEEEEEECCCCCCcc----eecceEEECCCCEE
Confidence 44455555677888999999999988654311 11134699999999997544567 99999999999999
Q ss_pred EEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCcccccccc-----cCCHH
Q 024032 102 LLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSR-----GFNYN 170 (273)
Q Consensus 102 aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~-----~~~~~ 170 (273)
||+||||||||||+++|+|+++ ++|+|.++|.++.+ +++.+++++|++.+ |..|++||. ..+++
T Consensus 370 aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l-----f~~ti~~Ni~~~~~~~~~~ 444 (574)
T PRK11160 370 ALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHL-----FSATLRDNLLLAAPNASDE 444 (574)
T ss_pred EEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchh-----hcccHHHHhhcCCCccCHH
Confidence 9999999999999999999999 99999999999864 56789999999885 445999984 24567
Q ss_pred HHHHHHHHhc-------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH--H----HHHHHHhc
Q 024032 171 RVHEGLEELS-------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK--S----SPKYVLRR 221 (273)
Q Consensus 171 ~~~~~l~~~~-------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~--~----~l~~l~~~ 221 (273)
++.++++.++ ..||||||||. |+ +++|++|||||||++||+. . .+..+.+
T Consensus 445 ~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~- 523 (574)
T PRK11160 445 ALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQ- 523 (574)
T ss_pred HHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-
Confidence 7777777654 45999999986 44 8999999999999999999 2 2333332
Q ss_pred CCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccChh
Q 024032 222 VDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSAPG 257 (273)
Q Consensus 222 ~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~~ 257 (273)
++|+|+| ..||+|++|++|++++.|+++++++...
T Consensus 524 -~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~g 565 (574)
T PRK11160 524 -NKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQQG 565 (574)
T ss_pred -CCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHHHHhcCc
Confidence 7898888 4589999999999999999999986543
No 41
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-39 Score=288.34 Aligned_cols=178 Identities=20% Similarity=0.248 Sum_probs=145.2
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC--------
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-------- 137 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-------- 137 (273)
++++|++++|. ++++ |+++||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|.++..
T Consensus 1 l~~~~l~~~~~--~~~~----l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~ 74 (235)
T cd03261 1 IELRGLTKSFG--GRTV----LKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYR 74 (235)
T ss_pred CeEEEEEEEEC--CEEE----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHH
Confidence 47899999984 4567 999999999999999999999999999999999999 99999999988743
Q ss_pred CCccEEEEeccchhhhccCCccccccccc--------CCH----HHHHHHHHHhc---------ccCCHHHHHHH---Hh
Q 024032 138 SSHTITMYMEEHNVMRSLQSGFCVYDSRG--------FNY----NRVHEGLEELS---------SWMSEGVHHNQ---RC 193 (273)
Q Consensus 138 ~~~~i~~v~q~~~~~~~~~~~~tv~en~~--------~~~----~~~~~~l~~~~---------~~LSgGqkq~~---r~ 193 (273)
.++.+++++|++.++ ..+||.+|.. ... +++.++++.++ .+||||||||. |+
T Consensus 75 ~~~~i~~v~q~~~~~----~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~a 150 (235)
T cd03261 75 LRRRMGMLFQSGALF----DSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARA 150 (235)
T ss_pred HhcceEEEccCcccC----CCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHH
Confidence 246799999987753 3458888732 121 23455566655 57999999986 33
Q ss_pred -cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhcc
Q 024032 194 -LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFS 254 (273)
Q Consensus 194 -l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~ 254 (273)
+.+|++|||||||++||+. +.++++.++.|.|||++ .+||++++|++|++++.|+++++..
T Consensus 151 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (235)
T cd03261 151 LALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226 (235)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence 7899999999999999999 33555554348899888 4689999999999999999998864
No 42
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.1e-39 Score=323.58 Aligned_cols=216 Identities=18% Similarity=0.206 Sum_probs=175.3
Q ss_pred hhhhhhhhccchhhhhhhhHHHHHHHhchhhh-----ccCCCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEE
Q 024032 28 KFDECVKLKLDLPNVSTLTPRLRVLREMERLA-----LIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITIL 102 (273)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-----~~~~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~a 102 (273)
.+..+......++.+..+.+|+.++++.++.. .....+.+++++++|+|+. ++++ |+|+||++++||++|
T Consensus 297 pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~-~~~i----l~~i~l~i~~Ge~ia 371 (592)
T PRK10790 297 PLIELTTQQSMLQQAVVAGERVFELMDGPRQQYGNDDRPLQSGRIDIDNVSFAYRD-DNLV----LQNINLSVPSRGFVA 371 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCCCccCCCCCeEEEEEEEEEeCC-CCce----eeceeEEEcCCCEEE
Confidence 34455555667788899999999988754321 1112346999999999964 3456 999999999999999
Q ss_pred EEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCcccccccc----cCCHHHH
Q 024032 103 LMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSR----GFNYNRV 172 (273)
Q Consensus 103 ivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~----~~~~~~~ 172 (273)
|+|+||||||||+++|+|+++ ++|+|.++|.++.+ +++++++++|++.+ |+.|+++|. ..+++++
T Consensus 372 IvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~l-----F~~Ti~~NI~~~~~~~d~~i 446 (592)
T PRK10790 372 LVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVV-----LADTFLANVTLGRDISEEQV 446 (592)
T ss_pred EECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCcc-----ccchHHHHHHhCCCCCHHHH
Confidence 999999999999999999999 99999999998864 57889999999985 455999984 3356777
Q ss_pred HHHHHHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcC
Q 024032 173 HEGLEELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRV 222 (273)
Q Consensus 173 ~~~l~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~ 222 (273)
.++++.++ ..||||||||. |+ +++|++|||||||++||+. +.++.+.+
T Consensus 447 ~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-- 524 (592)
T PRK10790 447 WQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-- 524 (592)
T ss_pred HHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC--
Confidence 77777765 46999999987 55 8999999999999999999 22333333
Q ss_pred CcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccC
Q 024032 223 DFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSA 255 (273)
Q Consensus 223 g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~ 255 (273)
++|+|+| ..||+|++|++|++++.|+++++++.
T Consensus 525 ~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~~ 564 (592)
T PRK10790 525 HTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAA 564 (592)
T ss_pred CCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 6888888 45899999999999999999999854
No 43
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=1.3e-39 Score=305.09 Aligned_cols=182 Identities=19% Similarity=0.304 Sum_probs=152.1
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC---CCcc
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---SSHT 141 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---~~~~ 141 (273)
.++++|++++|. +.++ |+++||+|++||+++|+||||||||||+|+|+|+++ ++|+|+++|+++.. .++.
T Consensus 2 ~L~i~~l~~~~~--~~~~----l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ 75 (353)
T PRK10851 2 SIEIANIKKSFG--RTQV----LNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRK 75 (353)
T ss_pred EEEEEEEEEEeC--CeEE----EEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCC
Confidence 378999999984 4566 999999999999999999999999999999999999 99999999998853 3467
Q ss_pred EEEEeccchhhhccCCcccccccccC-----------C----HHHHHHHHHHhc---------ccCCHHHHHHH---Hh-
Q 024032 142 ITMYMEEHNVMRSLQSGFCVYDSRGF-----------N----YNRVHEGLEELS---------SWMSEGVHHNQ---RC- 193 (273)
Q Consensus 142 i~~v~q~~~~~~~~~~~~tv~en~~~-----------~----~~~~~~~l~~~~---------~~LSgGqkq~~---r~- 193 (273)
++|++|++.+++ .+||+||..+ + .+++.++++.++ .+||||||||. |+
T Consensus 76 i~~v~Q~~~l~p----~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL 151 (353)
T PRK10851 76 VGFVFQHYALFR----HMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARAL 151 (353)
T ss_pred EEEEecCcccCC----CCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH
Confidence 999999988644 4589888432 1 124555666665 67999999987 33
Q ss_pred cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChh
Q 024032 194 LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPG 257 (273)
Q Consensus 194 l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~ 257 (273)
+.+|++|||||||++||+. +.++++.++.|.|+|++ .+||+|++|++|++++.|++++++..|.
T Consensus 152 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~p~ 229 (353)
T PRK10851 152 AVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREPA 229 (353)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 7999999999999999999 34556666558899988 5689999999999999999999987653
No 44
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=1.4e-39 Score=306.82 Aligned_cols=184 Identities=18% Similarity=0.289 Sum_probs=154.4
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC---CC
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---SS 139 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---~~ 139 (273)
...++++|++++|. ++++ |+++||++++||+++|+|||||||||||++|+|+++ ++|+|.++|+++.. .+
T Consensus 12 ~~~L~l~~l~~~~~--~~~~----l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~ 85 (375)
T PRK09452 12 SPLVELRGISKSFD--GKEV----ISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAEN 85 (375)
T ss_pred CceEEEEEEEEEEC--CeEE----EeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHH
Confidence 44689999999994 4566 999999999999999999999999999999999999 99999999998864 34
Q ss_pred ccEEEEeccchhhhccCCcccccccccC-------CH----HHHHHHHHHhc---------ccCCHHHHHHH---Hh-cC
Q 024032 140 HTITMYMEEHNVMRSLQSGFCVYDSRGF-------NY----NRVHEGLEELS---------SWMSEGVHHNQ---RC-LR 195 (273)
Q Consensus 140 ~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~~----~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~ 195 (273)
+.++|++|++.+|+ .+||+||..+ +. +++.++++.++ .+||||||||+ |+ +.
T Consensus 86 r~ig~vfQ~~~lfp----~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~ 161 (375)
T PRK09452 86 RHVNTVFQSYALFP----HMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVN 161 (375)
T ss_pred CCEEEEecCcccCC----CCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 67999999998754 4599998432 21 23455666655 78999999987 43 78
Q ss_pred CCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChh
Q 024032 196 SDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPG 257 (273)
Q Consensus 196 ~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~ 257 (273)
+|++|||||||++||+. ..++++.++.|.|+|+| .+||+|++|++|++++.|++++++..|.
T Consensus 162 ~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p~ 237 (375)
T PRK09452 162 KPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPK 237 (375)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 99999999999999999 33556666568999998 5689999999999999999999987664
No 45
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4.4e-40 Score=337.85 Aligned_cols=211 Identities=19% Similarity=0.209 Sum_probs=173.7
Q ss_pred cchhhhhhhhHHHHHHHhchhh---------hccCCCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCC
Q 024032 37 LDLPNVSTLTPRLRVLREMERL---------ALIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFS 107 (273)
Q Consensus 37 ~~~~~~~~~~~r~~~~~~~~~~---------~~~~~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpn 107 (273)
..+..+..+..++.++.+-.+. ......+.++++||.|+|+.... + .+|+++||+|++|+.+||||||
T Consensus 312 ~~f~~a~~aa~~I~~~i~~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpd-v--~Il~g~sl~i~~G~~valVG~S 388 (1228)
T KOG0055|consen 312 SAFAKARAAAYRIFETIDRKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPD-V--KILKGVSLKIPSGQTVALVGPS 388 (1228)
T ss_pred HHHhccccchHHHHHHhcCCCCCCcccccCCcccccccceEEEEEEecCCCCCc-c--hhhCCeEEEeCCCCEEEEECCC
Confidence 4556778888888888764432 11123568999999999986531 2 3499999999999999999999
Q ss_pred CChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCcccccccc-----cCCHHHHHHHH
Q 024032 108 GSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSR-----GFNYNRVHEGL 176 (273)
Q Consensus 108 GsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~-----~~~~~~~~~~l 176 (273)
||||||++++|.|+|. ++|+|++||.++.. +|.+||.|.|+|. +|..||+||. +.+.+++.+++
T Consensus 389 GsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePv-----lF~~tI~eNI~~G~~dat~~~i~~a~ 463 (1228)
T KOG0055|consen 389 GSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPV-----LFATTIRENIRYGKPDATREEIEEAA 463 (1228)
T ss_pred CCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechh-----hhcccHHHHHhcCCCcccHHHHHHHH
Confidence 9999999999999999 99999999999874 6789999999997 5667999993 34577788887
Q ss_pred HHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEE
Q 024032 177 EELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAM 226 (273)
Q Consensus 177 ~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~ti 226 (273)
+.++ .+||||||||. |+ +++|+|||||||||+||+. +.+.+..+ |+|.
T Consensus 464 k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~--grTT 541 (1228)
T KOG0055|consen 464 KAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASK--GRTT 541 (1228)
T ss_pred HHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhc--CCeE
Confidence 7665 57999999987 44 8999999999999999999 33555544 7777
Q ss_pred EEc-------eeCCEEEEEeCCeEeeecChhhhccChh
Q 024032 227 VVS-------NIAEIYKALKAGDSKPLDATKRLFSAPG 257 (273)
Q Consensus 227 iiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~~ 257 (273)
|+| +.||+|++|++|+|++.|+|+|++..+.
T Consensus 542 ivVaHRLStIrnaD~I~v~~~G~IvE~G~h~ELi~~~G 579 (1228)
T KOG0055|consen 542 IVVAHRLSTIRNADKIAVMEEGKIVEQGTHDELIALGG 579 (1228)
T ss_pred EEEeeehhhhhccCEEEEEECCEEEEecCHHHHHhccc
Confidence 776 5699999999999999999999987653
No 46
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-40 Score=283.94 Aligned_cols=194 Identities=20% Similarity=0.275 Sum_probs=165.3
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CC
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SS 139 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~ 139 (273)
+++++|++++| +++.+ |+++|++|++|.+++|||||||||||||.++++|++ ++|+|+++|.++.. +.
T Consensus 1 MI~i~nv~K~y--~~~~v----l~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LA 74 (252)
T COG4604 1 MITIENVSKSY--GTKVV----LDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELA 74 (252)
T ss_pred CeeehhhhHhh--CCEEe----eccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHH
Confidence 47899999988 56777 999999999999999999999999999999999999 99999999999874 45
Q ss_pred ccEEEEeccchhhhccCCcccccccccC-------------CHHHHHHHHHHhc---------ccCCHHHHHHHHh----
Q 024032 140 HTITMYMEEHNVMRSLQSGFCVYDSRGF-------------NYNRVHEGLEELS---------SWMSEGVHHNQRC---- 193 (273)
Q Consensus 140 ~~i~~v~q~~~~~~~~~~~~tv~en~~~-------------~~~~~~~~l~~~~---------~~LSgGqkq~~r~---- 193 (273)
++++..-|+... ...+||+|-.+| ++..+.++++.+. .+||||||||.-+
T Consensus 75 k~lSILkQ~N~i----~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVl 150 (252)
T COG4604 75 KKLSILKQENHI----NSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVL 150 (252)
T ss_pred HHHHHHHhhchh----hheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheee
Confidence 666666666554 455688885322 3445777777766 7899999988622
Q ss_pred cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChhhH
Q 024032 194 LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPGLR 259 (273)
Q Consensus 194 l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~l~ 259 (273)
.++.+.++||||.++||.. +.+++++++.|+||++| .++|+|+.|++|+++.+|+++++++.+.++
T Consensus 151 aQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~~~L~ 230 (252)
T COG4604 151 AQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQPEILS 230 (252)
T ss_pred eccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCHHHHH
Confidence 6899999999999999999 45678888899999999 457999999999999999999999999999
Q ss_pred HHhCCceEEE
Q 024032 260 KCSKISFCIL 269 (273)
Q Consensus 260 ~~~~~~~~~~ 269 (273)
+.|+.++++.
T Consensus 231 eiydm~i~v~ 240 (252)
T COG4604 231 EIYDMDIPVE 240 (252)
T ss_pred HHhcCCceeE
Confidence 9999987765
No 47
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.3e-40 Score=281.89 Aligned_cols=193 Identities=15% Similarity=0.186 Sum_probs=158.7
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CC
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SS 139 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~ 139 (273)
+|+.+|++++. .++.+ |+++||++++||++||+||||||||||||.|+|.+. ++|++.++|.++.. +.
T Consensus 1 mi~a~nls~~~--~Gr~l----l~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA 74 (259)
T COG4559 1 MIRAENLSYSL--AGRRL----LDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELA 74 (259)
T ss_pred CeeeeeeEEEe--eccee----ccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHH
Confidence 46788888766 56777 999999999999999999999999999999999998 99999999999864 34
Q ss_pred ccEEEEeccchhhhccCCcccccccccC---------C--H--HHHHHHHHHhc---------ccCCHHHHHHH---Hh-
Q 024032 140 HTITMYMEEHNVMRSLQSGFCVYDSRGF---------N--Y--NRVHEGLEELS---------SWMSEGVHHNQ---RC- 193 (273)
Q Consensus 140 ~~i~~v~q~~~~~~~~~~~~tv~en~~~---------~--~--~~~~~~l~~~~---------~~LSgGqkq~~---r~- 193 (273)
++.+..+|+..+ -|.+||+|...+ . + +.+.+++..+. ..||||||||+ |+
T Consensus 75 ~~raVlpQ~s~l----aFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvL 150 (259)
T COG4559 75 RHRAVLPQNSSL----AFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVL 150 (259)
T ss_pred HHhhhcccCccc----ccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHH
Confidence 566777888775 788899986211 1 1 12455666554 67999999986 33
Q ss_pred --c----CCCCEEEEcCcCCCCCHHHH------HHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhc
Q 024032 194 --L----RSDDCALMKNDAEIDDLKSS------PKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLF 253 (273)
Q Consensus 194 --l----~~p~iLlLDEPts~LD~~~~------l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~ 253 (273)
+ -++++|+||||||+||+.++ .+.++++ |..|+.| .+||||++|.+|++++.|+|++++
T Consensus 151 aQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~-g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~vl 229 (259)
T COG4559 151 AQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE-GGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVL 229 (259)
T ss_pred HHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhc-CCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHhc
Confidence 2 34569999999999999943 4567766 7888888 678999999999999999999999
Q ss_pred cChhhHHHhCCceEEE
Q 024032 254 SAPGLRKCSKISFCIL 269 (273)
Q Consensus 254 ~~~~l~~~~~~~~~~~ 269 (273)
+.+.++.+||.++.+.
T Consensus 230 t~Etl~~vyg~~~~V~ 245 (259)
T COG4559 230 TDETLERVYGADIRVG 245 (259)
T ss_pred CHHHHHHHhCCceeee
Confidence 9999999999987664
No 48
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.5e-39 Score=286.06 Aligned_cols=182 Identities=20% Similarity=0.323 Sum_probs=147.7
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC---CCcc
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---SSHT 141 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---~~~~ 141 (273)
.++++|++++|+ ++++ |+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|+++.. .++.
T Consensus 2 ~l~~~~l~~~~~--~~~i----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 75 (239)
T cd03296 2 SIEVRNVSKRFG--DFVA----LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERN 75 (239)
T ss_pred EEEEEeEEEEEC--CEEe----eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccc
Confidence 378999999994 4567 999999999999999999999999999999999999 99999999998753 2457
Q ss_pred EEEEeccchhhhccCCcccccccccC-----------CH----HHHHHHHHHhc---------ccCCHHHHHHH---Hh-
Q 024032 142 ITMYMEEHNVMRSLQSGFCVYDSRGF-----------NY----NRVHEGLEELS---------SWMSEGVHHNQ---RC- 193 (273)
Q Consensus 142 i~~v~q~~~~~~~~~~~~tv~en~~~-----------~~----~~~~~~l~~~~---------~~LSgGqkq~~---r~- 193 (273)
++|++|++.+ +...|+.+|..+ .. +.+.++++.++ .+|||||+||. |+
T Consensus 76 i~~v~q~~~~----~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al 151 (239)
T cd03296 76 VGFVFQHYAL----FRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARAL 151 (239)
T ss_pred eEEEecCCcc----cCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHH
Confidence 9999998775 334588887321 11 23445555554 67999999986 33
Q ss_pred cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChh
Q 024032 194 LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPG 257 (273)
Q Consensus 194 l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~ 257 (273)
+.+|++|||||||++||+. +.+++++++.|+|||++ ..||++++|++|+++..|+++++++.+.
T Consensus 152 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~ 229 (239)
T cd03296 152 AVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDHPA 229 (239)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhcCCC
Confidence 7899999999999999999 33555655447899988 4689999999999999999999876544
No 49
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=1.6e-39 Score=305.30 Aligned_cols=182 Identities=17% Similarity=0.280 Sum_probs=152.9
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-Cc--cEEEECCeeCCC---C
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RS--GLVLFAQTSSGN---S 138 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~--G~I~i~g~~i~~---~ 138 (273)
+.+++++++++|. +..+ |+++||+|++||+++|+|||||||||||++|+|+++ ++ |+|.++|+++.. .
T Consensus 4 ~~l~~~~l~~~~~--~~~~----l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~ 77 (362)
T TIGR03258 4 GGIRIDHLRVAYG--ANTV----LDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPH 77 (362)
T ss_pred eEEEEEEEEEEEC--CeEE----EeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHH
Confidence 3588999999994 4556 999999999999999999999999999999999999 99 999999998854 3
Q ss_pred CccEEEEeccchhhhccCCcccccccccC-------C----HHHHHHHHHHhc---------ccCCHHHHHHH---Hh-c
Q 024032 139 SHTITMYMEEHNVMRSLQSGFCVYDSRGF-------N----YNRVHEGLEELS---------SWMSEGVHHNQ---RC-L 194 (273)
Q Consensus 139 ~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~----~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l 194 (273)
++.+++++|++.+|+ .+||++|..+ + .+++.++++.++ .+||||||||. |+ +
T Consensus 78 ~r~ig~vfQ~~~l~p----~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~ 153 (362)
T TIGR03258 78 KRGLALLFQNYALFP----HLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIA 153 (362)
T ss_pred HCCEEEEECCcccCC----CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHh
Confidence 467999999988654 4599998432 2 234556677665 78999999987 44 7
Q ss_pred CCCCEEEEcCcCCCCCHH------HHHHHHHhcC-CcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 195 RSDDCALMKNDAEIDDLK------SSPKYVLRRV-DFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 195 ~~p~iLlLDEPts~LD~~------~~l~~l~~~~-g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
.+|++|||||||++||+. ..++++.++. |.|+|++ .+||+|++|++|++++.|++++++..|
T Consensus 154 ~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~p 230 (362)
T TIGR03258 154 IEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAP 230 (362)
T ss_pred cCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 899999999999999999 3355666654 7899888 568999999999999999999998765
No 50
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=1.8e-39 Score=287.98 Aligned_cols=187 Identities=21% Similarity=0.254 Sum_probs=148.9
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-------
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------- 137 (273)
+++++|++++|. +++++ |+++||++++|++++|+||||||||||+++|+|+++ ++|+|.++|.++..
T Consensus 1 ~l~~~~l~~~~~-~~~~i----l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 75 (243)
T TIGR02315 1 MLEVENLSKVYP-NGKQA----LKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLR 75 (243)
T ss_pred CeEEEeeeeecC-CCcce----eecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHH
Confidence 368999999985 24556 999999999999999999999999999999999999 99999999998753
Q ss_pred -CCccEEEEeccchhhhccCCcccccccccC-------------------CHHHHHHHHHHhc---------ccCCHHHH
Q 024032 138 -SSHTITMYMEEHNVMRSLQSGFCVYDSRGF-------------------NYNRVHEGLEELS---------SWMSEGVH 188 (273)
Q Consensus 138 -~~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------------------~~~~~~~~l~~~~---------~~LSgGqk 188 (273)
.++.+++++|++.++ ..+|+.+|..+ ..+++.++++.++ .+||||||
T Consensus 76 ~~~~~i~~v~q~~~~~----~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~ 151 (243)
T TIGR02315 76 KLRRRIGMIFQHYNLI----ERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQ 151 (243)
T ss_pred HHHhheEEEcCCCccc----ccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHH
Confidence 246799999987753 34588777421 0123455566655 67999999
Q ss_pred HHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChh
Q 024032 189 HNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATK 250 (273)
Q Consensus 189 q~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~ 250 (273)
||. |+ +.+|++|||||||++||+. +.++++.++.|.|||++ .+||++++|++|++++.|+++
T Consensus 152 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~ 231 (243)
T TIGR02315 152 QRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPS 231 (243)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHH
Confidence 987 33 7899999999999999999 34555554447899888 568999999999999999998
Q ss_pred hhccChhhHHHh
Q 024032 251 RLFSAPGLRKCS 262 (273)
Q Consensus 251 ~l~~~~~l~~~~ 262 (273)
++ ....+.+.|
T Consensus 232 ~~-~~~~~~~~~ 242 (243)
T TIGR02315 232 EL-DDEVLRHIY 242 (243)
T ss_pred Hh-ChHHHHHhh
Confidence 87 344455554
No 51
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-39 Score=301.77 Aligned_cols=182 Identities=22% Similarity=0.273 Sum_probs=150.0
Q ss_pred ceEEEEEEEEeecC--CeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----
Q 024032 66 LNELRHKFLSYRSG--DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN----- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g--~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~----- 137 (273)
+++++|++++|+.+ ++++ |+++||+|++||++||+||||||||||+|+|+|+++ ++|+|.++|.++..
T Consensus 1 mi~i~~l~~~y~~~~~~~~i----l~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~ 76 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHA----LNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKE 76 (343)
T ss_pred CEEEEeEEEEeCCCCCceEE----EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHH
Confidence 37899999999632 3456 999999999999999999999999999999999999 99999999998753
Q ss_pred ---CCccEEEEeccchhhhccCCccccccccc-------CCH----HHHHHHHHHhc---------ccCCHHHHHHH---
Q 024032 138 ---SSHTITMYMEEHNVMRSLQSGFCVYDSRG-------FNY----NRVHEGLEELS---------SWMSEGVHHNQ--- 191 (273)
Q Consensus 138 ---~~~~i~~v~q~~~~~~~~~~~~tv~en~~-------~~~----~~~~~~l~~~~---------~~LSgGqkq~~--- 191 (273)
.++.++|++|++.+ +..+|+.||.. ... +++.+.++.++ .+||||||||.
T Consensus 77 ~~~~~~~ig~v~q~~~l----~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lA 152 (343)
T PRK11153 77 LRKARRQIGMIFQHFNL----LSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIA 152 (343)
T ss_pred HHHHhcCEEEEeCCCcc----CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHH
Confidence 24679999999875 34468888832 222 23455666655 67999999987
Q ss_pred Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccC
Q 024032 192 RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSA 255 (273)
Q Consensus 192 r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~ 255 (273)
|+ +++|++|||||||++||+. +.++++.++.|+|||++ .+||++++|++|++++.|++++++..
T Consensus 153 raL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~~ 231 (343)
T PRK11153 153 RALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSH 231 (343)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 33 7899999999999999999 34566655458899998 56899999999999999999998755
No 52
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-39 Score=295.46 Aligned_cols=191 Identities=14% Similarity=0.127 Sum_probs=151.8
Q ss_pred eEEEEEEEEeecCC---eeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----
Q 024032 67 NELRHKFLSYRSGD---FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN----- 137 (273)
Q Consensus 67 i~~~~v~~~y~~g~---~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~----- 137 (273)
++++|++++|+.+. .++ |+++||+|++||++||+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 3 l~~~~l~~~y~~~~~~~~~~----L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 78 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRA----LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNK 78 (290)
T ss_pred EEEEEEEEEECCCCcccccc----eeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccc
Confidence 78999999996421 345 999999999999999999999999999999999999 99999999998741
Q ss_pred ----CCccEEEEeccchhhhccCCccccccccc-------CCH----HHHHHHHHHhc----------ccCCHHHHHHH-
Q 024032 138 ----SSHTITMYMEEHNVMRSLQSGFCVYDSRG-------FNY----NRVHEGLEELS----------SWMSEGVHHNQ- 191 (273)
Q Consensus 138 ----~~~~i~~v~q~~~~~~~~~~~~tv~en~~-------~~~----~~~~~~l~~~~----------~~LSgGqkq~~- 191 (273)
.++.++|++|++... ++..||++|.. .+. +.+.++++.++ ..||||||||.
T Consensus 79 ~~~~~~~~ig~v~q~~~~~---l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~ 155 (290)
T PRK13634 79 KLKPLRKKVGIVFQFPEHQ---LFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVA 155 (290)
T ss_pred hHHHHHhhEEEEeeCchhh---hhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHH
Confidence 345799999987321 33458888842 222 23455556555 67999999986
Q ss_pred --Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhcc
Q 024032 192 --RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFS 254 (273)
Q Consensus 192 --r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~ 254 (273)
|+ +.+|++|||||||++||+. +.++++.++.|.|||++ .+||||++|++|++++.|+++++++
T Consensus 156 lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 235 (290)
T PRK13634 156 IAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFA 235 (290)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 33 7899999999999999999 33556655558999998 5689999999999999999999887
Q ss_pred ChhhHHHhCC
Q 024032 255 APGLRKCSKI 264 (273)
Q Consensus 255 ~~~l~~~~~~ 264 (273)
.+.+...++.
T Consensus 236 ~~~~~~~~~~ 245 (290)
T PRK13634 236 DPDELEAIGL 245 (290)
T ss_pred CHHHHHHCCC
Confidence 6655444333
No 53
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=4.7e-39 Score=283.54 Aligned_cols=185 Identities=15% Similarity=0.158 Sum_probs=149.6
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC------CC
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------SS 139 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------~~ 139 (273)
++++|++++|+ ++.+ |+++||++++|++++|+||||||||||+++|+|+++ ++|+|.++|+++.. .+
T Consensus 1 l~~~~l~~~~~--~~~~----l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 74 (232)
T cd03218 1 LRAENLSKRYG--KRKV----VNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRAR 74 (232)
T ss_pred CeEEEEEEEeC--CEEe----eccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHh
Confidence 47899999984 4566 999999999999999999999999999999999999 99999999998743 23
Q ss_pred ccEEEEeccchhhhccCCcccccccccC-------C----HHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cC
Q 024032 140 HTITMYMEEHNVMRSLQSGFCVYDSRGF-------N----YNRVHEGLEELS---------SWMSEGVHHNQ---RC-LR 195 (273)
Q Consensus 140 ~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~----~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~ 195 (273)
+.+++++|++.+ +..+|+++|..+ . .+.+.+.++.++ ..||||||||. ++ +.
T Consensus 75 ~~i~~~~q~~~~----~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~ 150 (232)
T cd03218 75 LGIGYLPQEASI----FRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALAT 150 (232)
T ss_pred ccEEEecCCccc----cccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 468999998765 344588887321 1 123445566554 67999999986 33 78
Q ss_pred CCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChhhHHH
Q 024032 196 SDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPGLRKC 261 (273)
Q Consensus 196 ~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~l~~~ 261 (273)
+|++|||||||+|||+. +.++++.++ +.|||++ .+||++++|++|+++..|+++++...+.+++.
T Consensus 151 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~ 229 (232)
T cd03218 151 NPKFLLLDEPFAGVDPIAVQDIQKIIKILKDR-GIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAANELVRKV 229 (232)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhcCHHHHHH
Confidence 99999999999999999 345566554 8899888 56899999999999999999998876666666
Q ss_pred h
Q 024032 262 S 262 (273)
Q Consensus 262 ~ 262 (273)
|
T Consensus 230 ~ 230 (232)
T cd03218 230 Y 230 (232)
T ss_pred h
Confidence 5
No 54
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.9e-39 Score=285.34 Aligned_cols=184 Identities=21% Similarity=0.230 Sum_probs=146.3
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC--------
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-------- 137 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-------- 137 (273)
++++|++++|.. ++++ |+++||++++|++++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~-~~~~----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 75 (241)
T cd03256 1 IEVENLSKTYPN-GKKA----LKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQ 75 (241)
T ss_pred CEEeeEEEecCC-ccEE----EecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHH
Confidence 468999999853 2556 999999999999999999999999999999999998 99999999998753
Q ss_pred CCccEEEEeccchhhhccCCcccccccccC----------------C---HHHHHHHHHHhc---------ccCCHHHHH
Q 024032 138 SSHTITMYMEEHNVMRSLQSGFCVYDSRGF----------------N---YNRVHEGLEELS---------SWMSEGVHH 189 (273)
Q Consensus 138 ~~~~i~~v~q~~~~~~~~~~~~tv~en~~~----------------~---~~~~~~~l~~~~---------~~LSgGqkq 189 (273)
.++.+++++|++.+ ++.+|+.+|..+ . .+++.++++.++ .+|||||||
T Consensus 76 ~~~~i~~~~q~~~~----~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q 151 (241)
T cd03256 76 LRRQIGMIFQQFNL----IERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQ 151 (241)
T ss_pred HHhccEEEcccCcc----cccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHH
Confidence 24568999998775 334588877321 1 123445566655 679999999
Q ss_pred HH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhh
Q 024032 190 NQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKR 251 (273)
Q Consensus 190 ~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~ 251 (273)
|. |+ +.+|++|||||||++||+. +.++++.++.|.|||++ .+||++++|++|++++.|++++
T Consensus 152 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 231 (241)
T cd03256 152 RVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAE 231 (241)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHH
Confidence 86 33 7899999999999999999 33555554448899988 4789999999999999999988
Q ss_pred hccChhhHH
Q 024032 252 LFSAPGLRK 260 (273)
Q Consensus 252 l~~~~~l~~ 260 (273)
+. .+.+.+
T Consensus 232 ~~-~~~~~~ 239 (241)
T cd03256 232 LT-DEVLDE 239 (241)
T ss_pred hh-HHHHHh
Confidence 64 333443
No 55
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-39 Score=295.59 Aligned_cols=192 Identities=14% Similarity=0.149 Sum_probs=151.3
Q ss_pred ceEEEEEEEEeecCC---eeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC----
Q 024032 66 LNELRHKFLSYRSGD---FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~---~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---- 137 (273)
+++++|++++|..+. +.+ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|+++|.++..
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~----l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 76 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRA----LFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQ 76 (288)
T ss_pred CEEEEEEEEEeCCCCcccccc----eeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECcccccc
Confidence 478999999996332 235 999999999999999999999999999999999999 99999999998741
Q ss_pred -----CCccEEEEeccchhhhccCCcccccccccC-------CHH----HHHHHHHHhc----------ccCCHHHHHHH
Q 024032 138 -----SSHTITMYMEEHNVMRSLQSGFCVYDSRGF-------NYN----RVHEGLEELS----------SWMSEGVHHNQ 191 (273)
Q Consensus 138 -----~~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~~~----~~~~~l~~~~----------~~LSgGqkq~~ 191 (273)
.++.+++++|++.. .++..||.+|..+ +.+ ++.++++.++ ..||||||||.
T Consensus 77 ~~~~~~~~~ig~v~q~~~~---~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrv 153 (288)
T PRK13643 77 KEIKPVRKKVGVVFQFPES---QLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRV 153 (288)
T ss_pred ccHHHHHhhEEEEecCcch---hcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHH
Confidence 35679999998732 1344588887432 222 2445555444 66999999987
Q ss_pred ---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhc
Q 024032 192 ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLF 253 (273)
Q Consensus 192 ---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~ 253 (273)
++ +.+|++|||||||++||+. +.+++++++ |.|||++ .+||+|++|++|++++.|++++++
T Consensus 154 aiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~-g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 232 (288)
T PRK13643 154 AIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQS-GQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVF 232 (288)
T ss_pred HHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 33 7899999999999999999 335556554 8999999 468999999999999999999998
Q ss_pred cChhhHHHhCCc
Q 024032 254 SAPGLRKCSKIS 265 (273)
Q Consensus 254 ~~~~l~~~~~~~ 265 (273)
....+...++..
T Consensus 233 ~~~~~~~~~~~~ 244 (288)
T PRK13643 233 QEVDFLKAHELG 244 (288)
T ss_pred cCHHHHHHcCCC
Confidence 765544444443
No 56
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.4e-39 Score=291.28 Aligned_cols=187 Identities=18% Similarity=0.276 Sum_probs=152.2
Q ss_pred ceEEEEEEEEeecC-CeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----C
Q 024032 66 LNELRHKFLSYRSG-DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----S 138 (273)
Q Consensus 66 ~i~~~~v~~~y~~g-~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~ 138 (273)
.++++|++++|..+ ..++ |+++||+|++||++||+||||||||||+++|+|+++ ++|+|.++|.++.. .
T Consensus 4 ~l~~~~l~~~~~~~~~~~~----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 79 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYT----LNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDI 79 (279)
T ss_pred eEEEEeEEEEcCCCCcCee----eeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHH
Confidence 68999999999642 2346 999999999999999999999999999999999999 99999999998853 3
Q ss_pred CccEEEEeccchhhhccCCcccccccccC-------CH----HHHHHHHHHhc---------ccCCHHHHHHH---Hh-c
Q 024032 139 SHTITMYMEEHNVMRSLQSGFCVYDSRGF-------NY----NRVHEGLEELS---------SWMSEGVHHNQ---RC-L 194 (273)
Q Consensus 139 ~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~~----~~~~~~l~~~~---------~~LSgGqkq~~---r~-l 194 (273)
++.+++++|++.. .++..||.+|..+ +. +.+.++++.++ .+|||||+||. |+ +
T Consensus 80 ~~~i~~v~q~~~~---~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~ 156 (279)
T PRK13650 80 RHKIGMVFQNPDN---QFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVA 156 (279)
T ss_pred HhhceEEEcChHH---hcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHH
Confidence 4679999998742 1445688888432 22 23556666655 78999999986 33 7
Q ss_pred CCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccChhhH
Q 024032 195 RSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSAPGLR 259 (273)
Q Consensus 195 ~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~~l~ 259 (273)
.+|++|||||||+|||+. +.++++.++.|+|||++ ..||++++|++|+++..|++++++......
T Consensus 157 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~ 234 (279)
T PRK13650 157 MRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSRGNDL 234 (279)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcChHHH
Confidence 999999999999999999 33555655458999999 458999999999999999999988765433
No 57
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.4e-39 Score=292.92 Aligned_cols=185 Identities=14% Similarity=0.192 Sum_probs=149.6
Q ss_pred ceEEEEEEEEeecCC---eeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC----
Q 024032 66 LNELRHKFLSYRSGD---FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~---~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---- 137 (273)
.+++++++++|+.+. +++ |+++||+|++||++||+||||||||||+++|+|+++ ++|+|.++|.++..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~----l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 77 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKA----LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVK 77 (287)
T ss_pred EEEEEEEEEECCCCCccccce----eeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCcc
Confidence 378999999996421 345 999999999999999999999999999999999999 99999999998753
Q ss_pred ---CCccEEEEeccchhhhccCCcccccccccC-------CH----HHHHHHHHHhc-----------ccCCHHHHHHH-
Q 024032 138 ---SSHTITMYMEEHNVMRSLQSGFCVYDSRGF-------NY----NRVHEGLEELS-----------SWMSEGVHHNQ- 191 (273)
Q Consensus 138 ---~~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~~----~~~~~~l~~~~-----------~~LSgGqkq~~- 191 (273)
.+++++|++|++.. .++..||++|..+ +. +++.++++.++ ..||||||||.
T Consensus 78 ~~~~~~~ig~v~q~~~~---~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~ 154 (287)
T PRK13637 78 LSDIRKKVGLVFQYPEY---QLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVA 154 (287)
T ss_pred HHHHhhceEEEecCchh---ccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHH
Confidence 24679999998742 1345688888422 22 23455666544 66999999986
Q ss_pred --Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhcc
Q 024032 192 --RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFS 254 (273)
Q Consensus 192 --r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~ 254 (273)
|+ +.+|++|||||||+|||+. +.++++.++.|.|||++ .+||+|++|++|++++.|+++++++
T Consensus 155 iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13637 155 IAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFK 234 (287)
T ss_pred HHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 33 7899999999999999999 34556655458999998 5689999999999999999999876
Q ss_pred Chh
Q 024032 255 APG 257 (273)
Q Consensus 255 ~~~ 257 (273)
...
T Consensus 235 ~~~ 237 (287)
T PRK13637 235 EVE 237 (287)
T ss_pred CHH
Confidence 543
No 58
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-39 Score=302.98 Aligned_cols=181 Identities=20% Similarity=0.274 Sum_probs=151.0
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC---CCcc
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---SSHT 141 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---~~~~ 141 (273)
.++++|++++|. ++.+ |+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|+++.. .++.
T Consensus 3 ~l~i~~l~~~~~--~~~v----l~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~ 76 (369)
T PRK11000 3 SVTLRNVTKAYG--DVVI----SKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERG 76 (369)
T ss_pred EEEEEEEEEEeC--CeEE----EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCC
Confidence 588999999994 4567 999999999999999999999999999999999999 99999999998754 3467
Q ss_pred EEEEeccchhhhccCCcccccccccC-------C----HHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCC
Q 024032 142 ITMYMEEHNVMRSLQSGFCVYDSRGF-------N----YNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSD 197 (273)
Q Consensus 142 i~~v~q~~~~~~~~~~~~tv~en~~~-------~----~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p 197 (273)
++|++|++.++ ..+||+||..+ + .+++.++++.++ .+||||||||. |+ +.+|
T Consensus 77 i~~v~Q~~~l~----~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P 152 (369)
T PRK11000 77 VGMVFQSYALY----PHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEP 152 (369)
T ss_pred EEEEeCCcccC----CCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 99999998764 34599998432 2 134556666665 67999999987 33 7899
Q ss_pred CEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 198 DCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 198 ~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
++|||||||++||+. +.++++.++.|.|+|++ .+||++++|++|+++..|++++++..|
T Consensus 153 ~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~p 225 (369)
T PRK11000 153 SVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYP 225 (369)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 999999999999999 33556655558899988 568999999999999999999998654
No 59
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.4e-39 Score=303.74 Aligned_cols=184 Identities=19% Similarity=0.255 Sum_probs=153.7
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC---CC
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---SS 139 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---~~ 139 (273)
...+++++++++|. +.++ |+++||+|++||+++|+|||||||||||++|+|+++ ++|+|.++|+++.. .+
T Consensus 17 ~~~l~l~~v~~~~~--~~~~----l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~ 90 (377)
T PRK11607 17 TPLLEIRNLTKSFD--GQHA----VDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQ 90 (377)
T ss_pred CceEEEEeEEEEEC--CEEE----EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHH
Confidence 34699999999994 4566 999999999999999999999999999999999999 99999999998754 45
Q ss_pred ccEEEEeccchhhhccCCcccccccccC-------CH----HHHHHHHHHhc---------ccCCHHHHHHH---Hh-cC
Q 024032 140 HTITMYMEEHNVMRSLQSGFCVYDSRGF-------NY----NRVHEGLEELS---------SWMSEGVHHNQ---RC-LR 195 (273)
Q Consensus 140 ~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~~----~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~ 195 (273)
+.++|++|++.+|+ .+||+||..+ +. +++.+.++.++ .+||||||||. |+ +.
T Consensus 91 r~ig~vfQ~~~lfp----~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~ 166 (377)
T PRK11607 91 RPINMMFQSYALFP----HMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAK 166 (377)
T ss_pred CCEEEEeCCCccCC----CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 68999999998754 4599999432 22 23455666655 67999999987 44 78
Q ss_pred CCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChh
Q 024032 196 SDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPG 257 (273)
Q Consensus 196 ~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~ 257 (273)
+|++|||||||++||+. +.++++.++.|.|+|++ .+||++++|++|++++.|++++++..|.
T Consensus 167 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p~ 242 (377)
T PRK11607 167 RPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPT 242 (377)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCCc
Confidence 99999999999999999 23455655568999998 5689999999999999999999987654
No 60
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=7.8e-39 Score=298.44 Aligned_cols=180 Identities=16% Similarity=0.174 Sum_probs=149.5
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC----C
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN----S 138 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~----~ 138 (273)
...++++|++++|+ ++.+ |+++||+|++|+++||+||||||||||+++|+|+++ ++|+|.++|.++.. .
T Consensus 39 ~~~i~i~nl~k~y~--~~~~----l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~ 112 (340)
T PRK13536 39 TVAIDLAGVSKSYG--DKAV----VNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLA 112 (340)
T ss_pred ceeEEEEEEEEEEC--CEEE----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHH
Confidence 34699999999994 5566 999999999999999999999999999999999999 99999999998753 4
Q ss_pred CccEEEEeccchhhhccCCccccccccc-------CCH----HHHHHHHHHhc---------ccCCHHHHHHH---Hh-c
Q 024032 139 SHTITMYMEEHNVMRSLQSGFCVYDSRG-------FNY----NRVHEGLEELS---------SWMSEGVHHNQ---RC-L 194 (273)
Q Consensus 139 ~~~i~~v~q~~~~~~~~~~~~tv~en~~-------~~~----~~~~~~l~~~~---------~~LSgGqkq~~---r~-l 194 (273)
++.++|++|++.+ +..+|+.||.. .+. +.+.++++.++ ..||||||||. ++ +
T Consensus 113 ~~~ig~v~q~~~~----~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~ 188 (340)
T PRK13536 113 RARIGVVPQFDNL----DLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALI 188 (340)
T ss_pred hccEEEEeCCccC----CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHh
Confidence 5679999999775 44568888732 121 23445566555 67999999986 33 7
Q ss_pred CCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhcc
Q 024032 195 RSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFS 254 (273)
Q Consensus 195 ~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~ 254 (273)
++|++|||||||+||||. +.++++.++ |.|||++ .+||+|++|++|+++..|+++++..
T Consensus 189 ~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~-g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 189 NDPQLLILDEPTTGLDPHARHLIWERLRSLLAR-GKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALID 261 (340)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 899999999999999999 345666554 8999999 5699999999999999999998854
No 61
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-39 Score=297.96 Aligned_cols=191 Identities=10% Similarity=0.081 Sum_probs=151.3
Q ss_pred ceEEEEEEEEeecCC---eeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCC-----
Q 024032 66 LNELRHKFLSYRSGD---FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSG----- 136 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~---~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~----- 136 (273)
.++++|++++|..+. ..+ |+++||+|++||++||+||||||||||+++|+|+++ ++|+|+++|.++.
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~----l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~ 77 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKA----LDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKT 77 (305)
T ss_pred EEEEEEEEEEECCCCCccccc----eeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccc
Confidence 378999999996432 235 999999999999999999999999999999999999 9999999987541
Q ss_pred ------------------------CCCccEEEEeccchhhhccCCcccccccccC-------CH----HHHHHHHHHhc-
Q 024032 137 ------------------------NSSHTITMYMEEHNVMRSLQSGFCVYDSRGF-------NY----NRVHEGLEELS- 180 (273)
Q Consensus 137 ------------------------~~~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~~----~~~~~~l~~~~- 180 (273)
..++.++|++|++.. .++..||+||..+ +. +++.++++.++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~---~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL 154 (305)
T PRK13651 78 KEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEY---QLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGL 154 (305)
T ss_pred ccccccccccccccccccccchHHHHHhceEEEeeCccc---ccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCC
Confidence 135679999998632 1345688887432 22 23455666655
Q ss_pred ---------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCC
Q 024032 181 ---------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAE 233 (273)
Q Consensus 181 ---------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad 233 (273)
..||||||||. ++ +.+|++|||||||++||+. +.++++.++ |.|||++ .+||
T Consensus 155 ~~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tiiivtHd~~~~~~~ad 233 (305)
T PRK13651 155 DESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQ-GKTIILVTHDLDNVLEWTK 233 (305)
T ss_pred ChhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeeCHHHHHHhCC
Confidence 66999999987 33 7899999999999999999 345556544 8999998 5689
Q ss_pred EEEEEeCCeEeeecChhhhccChhhHHHhCC
Q 024032 234 IYKALKAGDSKPLDATKRLFSAPGLRKCSKI 264 (273)
Q Consensus 234 ~i~vl~~G~i~~~g~~~~l~~~~~l~~~~~~ 264 (273)
||++|++|++++.|++++++..+.+...++.
T Consensus 234 rv~vl~~G~i~~~g~~~~~~~~~~~~~~~~~ 264 (305)
T PRK13651 234 RTIFFKDGKIIKDGDTYDILSDNKFLIENNM 264 (305)
T ss_pred EEEEEECCEEEEECCHHHHhcCHHHHHHCCC
Confidence 9999999999999999999877654444443
No 62
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=4e-39 Score=325.17 Aligned_cols=218 Identities=15% Similarity=0.170 Sum_probs=177.6
Q ss_pred hhhhhhhhccchhhhhhhhHHHHHHHhchhhhc-------cCCCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcE
Q 024032 28 KFDECVKLKLDLPNVSTLTPRLRVLREMERLAL-------IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVIT 100 (273)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-------~~~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~ 100 (273)
.+..+...-..++.+..+.+|+.++++.+++.. ....+.++++|++|+|+.+++++ |+++||++++|+.
T Consensus 410 pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~~i~~~~vsf~y~~~~~~i----l~~i~l~i~~G~~ 485 (694)
T TIGR01846 410 PVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSAGLAALPELRGAITFENIRFRYAPDSPEV----LSNLNLDIKPGEF 485 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCCeEEEEEEEEEcCCCCccc----cccceEEECCCCE
Confidence 345556666778899999999999987654311 11134699999999997655567 9999999999999
Q ss_pred EEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCccccccccc-----CCH
Q 024032 101 ILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSRG-----FNY 169 (273)
Q Consensus 101 ~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~~-----~~~ 169 (273)
+||+|+||||||||+|+|+|+++ ++|+|.++|.++.+ +|+.+++++|++.+ |..|++||.. .+.
T Consensus 486 vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~l-----f~~ti~eNi~~~~~~~~~ 560 (694)
T TIGR01846 486 IGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVL-----FSRSIRDNIALCNPGAPF 560 (694)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCee-----hhhhHHHHHhcCCCCCCH
Confidence 99999999999999999999999 99999999999864 56789999999884 4559999842 356
Q ss_pred HHHHHHHHHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHH
Q 024032 170 NRVHEGLEELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVL 219 (273)
Q Consensus 170 ~~~~~~l~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~ 219 (273)
+++.++++.++ ..||||||||. |+ +++|++|||||||++||+. +.++++.
T Consensus 561 ~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~ 640 (694)
T TIGR01846 561 EHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC 640 (694)
T ss_pred HHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh
Confidence 67777666554 57999999987 44 8999999999999999999 2234443
Q ss_pred hcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 220 RRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 220 ~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
+ ++|+|++ ..||+|++|++|++++.|+++++++..
T Consensus 641 ~--~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~~~ 682 (694)
T TIGR01846 641 R--GRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQ 682 (694)
T ss_pred C--CCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHHcC
Confidence 2 7898888 458999999999999999999998654
No 63
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.5e-39 Score=292.68 Aligned_cols=191 Identities=18% Similarity=0.155 Sum_probs=151.4
Q ss_pred eEEEEEEEEeecCC---eeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----
Q 024032 67 NELRHKFLSYRSGD---FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN----- 137 (273)
Q Consensus 67 i~~~~v~~~y~~g~---~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~----- 137 (273)
++++|++++|..+. ..+ |+++||+|++||++||+||||||||||+++|+|+++ ++|+|.++|.++..
T Consensus 3 l~~~~l~~~y~~~~~~~~~~----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~ 78 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQA----IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDK 78 (286)
T ss_pred EEEEEEEEEECCCCccccCc----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccc
Confidence 78999999996322 245 999999999999999999999999999999999999 99999999998742
Q ss_pred ----CCccEEEEeccchhhhccCCcccccccccC-------CH----HHHHHHHHHhc----------ccCCHHHHHHH-
Q 024032 138 ----SSHTITMYMEEHNVMRSLQSGFCVYDSRGF-------NY----NRVHEGLEELS----------SWMSEGVHHNQ- 191 (273)
Q Consensus 138 ----~~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~~----~~~~~~l~~~~----------~~LSgGqkq~~- 191 (273)
.++.+++++|++.. .++..|+.+|..+ +. +.+.++++.++ .+|||||+||.
T Consensus 79 ~~~~~~~~ig~v~q~~~~---~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~ 155 (286)
T PRK13646 79 YIRPVRKRIGMVFQFPES---QLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIA 155 (286)
T ss_pred hHHHHHhheEEEecChHh---ccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHH
Confidence 35679999998632 1334488887422 22 23445555554 67999999986
Q ss_pred --Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhcc
Q 024032 192 --RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFS 254 (273)
Q Consensus 192 --r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~ 254 (273)
|+ +.+|++|||||||+|||+. +.++++.++.|.|||++ .+||++++|++|++++.|+++++++
T Consensus 156 laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 235 (286)
T PRK13646 156 IVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFK 235 (286)
T ss_pred HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 33 7899999999999999999 33555654448999999 4689999999999999999999887
Q ss_pred ChhhHHHhCC
Q 024032 255 APGLRKCSKI 264 (273)
Q Consensus 255 ~~~l~~~~~~ 264 (273)
.......++.
T Consensus 236 ~~~~~~~~~~ 245 (286)
T PRK13646 236 DKKKLADWHI 245 (286)
T ss_pred CHHHHHHcCC
Confidence 6554444444
No 64
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.3e-39 Score=291.10 Aligned_cols=193 Identities=13% Similarity=0.187 Sum_probs=154.8
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCC-------
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSG------- 136 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~------- 136 (273)
.+++++|++++|.. ++.+ |+++||+|++||++||+||||||||||+++|+|+++ ++|+|.++|.++.
T Consensus 4 ~~l~~~~l~~~~~~-~~~~----l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~ 78 (283)
T PRK13636 4 YILKVEELNYNYSD-GTHA----LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLM 78 (283)
T ss_pred ceEEEEeEEEEeCC-CCee----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHH
Confidence 37899999999952 3456 999999999999999999999999999999999999 9999999999873
Q ss_pred CCCccEEEEeccchhhhccCCccccccccc-------CCH----HHHHHHHHHhc---------ccCCHHHHHHH---Hh
Q 024032 137 NSSHTITMYMEEHNVMRSLQSGFCVYDSRG-------FNY----NRVHEGLEELS---------SWMSEGVHHNQ---RC 193 (273)
Q Consensus 137 ~~~~~i~~v~q~~~~~~~~~~~~tv~en~~-------~~~----~~~~~~l~~~~---------~~LSgGqkq~~---r~ 193 (273)
..++.++|++|++... ++..|+++|.. .+. +.+.++++.++ ..|||||+||. |+
T Consensus 79 ~~~~~ig~v~q~~~~~---~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~lara 155 (283)
T PRK13636 79 KLRESVGMVFQDPDNQ---LFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGV 155 (283)
T ss_pred HHHhhEEEEecCcchh---hccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHH
Confidence 1346799999987421 34568888742 222 23455556555 77999999986 33
Q ss_pred -cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChhh
Q 024032 194 -LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPGL 258 (273)
Q Consensus 194 -l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~l 258 (273)
+.+|++|||||||+|||+. +.++++.++.|.|||++ .+||++++|++|++++.|+++++++....
T Consensus 156 L~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~ 235 (283)
T PRK13636 156 LVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEM 235 (283)
T ss_pred HHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCHHH
Confidence 7999999999999999999 33556655458899998 46899999999999999999998876555
Q ss_pred HHHhCCc
Q 024032 259 RKCSKIS 265 (273)
Q Consensus 259 ~~~~~~~ 265 (273)
...++.+
T Consensus 236 ~~~~~~~ 242 (283)
T PRK13636 236 LRKVNLR 242 (283)
T ss_pred HHHcCCC
Confidence 4444443
No 65
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=6.8e-39 Score=283.19 Aligned_cols=179 Identities=18% Similarity=0.207 Sum_probs=145.1
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCC------C
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNS------S 139 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~------~ 139 (273)
++++|++++|. ++++ |+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|.++... +
T Consensus 1 l~~~~l~~~~~--~~~~----l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (236)
T cd03219 1 LEVRGLTKRFG--GLVA----LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIAR 74 (236)
T ss_pred CeeeeeEEEEC--CEEE----ecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHh
Confidence 46899999984 4566 999999999999999999999999999999999999 999999999987531 3
Q ss_pred ccEEEEeccchhhhccCCcccccccccC-----------------C----HHHHHHHHHHhc---------ccCCHHHHH
Q 024032 140 HTITMYMEEHNVMRSLQSGFCVYDSRGF-----------------N----YNRVHEGLEELS---------SWMSEGVHH 189 (273)
Q Consensus 140 ~~i~~v~q~~~~~~~~~~~~tv~en~~~-----------------~----~~~~~~~l~~~~---------~~LSgGqkq 189 (273)
..++|++|++.+ +..+|++||..+ . .+.+.++++.++ .+|||||+|
T Consensus 75 ~~i~~v~q~~~l----~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~q 150 (236)
T cd03219 75 LGIGRTFQIPRL----FPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQR 150 (236)
T ss_pred cCEEEEeccccc----ccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHH
Confidence 468999999875 344588887311 0 123455566655 679999999
Q ss_pred HH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhh
Q 024032 190 NQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKR 251 (273)
Q Consensus 190 ~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~ 251 (273)
|. |+ +.+|++|||||||++||+. +.++++.++ |.|||++ .+||++++|++|+++..|++++
T Consensus 151 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 229 (236)
T cd03219 151 RLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRER-GITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDE 229 (236)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHH
Confidence 86 33 7899999999999999999 345555544 8899888 5689999999999999999998
Q ss_pred hccCh
Q 024032 252 LFSAP 256 (273)
Q Consensus 252 l~~~~ 256 (273)
++.++
T Consensus 230 ~~~~~ 234 (236)
T cd03219 230 VRNNP 234 (236)
T ss_pred hccCC
Confidence 86543
No 66
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=4e-39 Score=281.24 Aligned_cols=169 Identities=21% Similarity=0.272 Sum_probs=137.3
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-------
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------- 137 (273)
+++++|++++|+.+.+++ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 1 ~l~~~~l~~~~~~~~~~i----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 76 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQPA----LDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIP 76 (216)
T ss_pred CeEEEEEEEEecCCCeeE----EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHH
Confidence 378999999996433457 999999999999999999999999999999999999 99999999998743
Q ss_pred -CCccEEEEeccchhhhccCCcccccccccC-------C----HHHHHHHHHHhc---------ccCCHHHHHHH---Hh
Q 024032 138 -SSHTITMYMEEHNVMRSLQSGFCVYDSRGF-------N----YNRVHEGLEELS---------SWMSEGVHHNQ---RC 193 (273)
Q Consensus 138 -~~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~----~~~~~~~l~~~~---------~~LSgGqkq~~---r~ 193 (273)
.++.++|++|++.+ +..+|+.||..+ . .+++.++++.++ .+||||||||. |+
T Consensus 77 ~~~~~i~~~~q~~~~----~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~lara 152 (216)
T TIGR00960 77 FLRRHIGMVFQDHRL----LSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARA 152 (216)
T ss_pred HHHHhceEEecCccc----cccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 24579999999775 344588887421 1 234556666665 67999999986 33
Q ss_pred -cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeE
Q 024032 194 -LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDS 243 (273)
Q Consensus 194 -l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i 243 (273)
+.+|++|||||||++||+. +.++++.++ |.|||++ .+||++++|++|++
T Consensus 153 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 153 IVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRR-GTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 7899999999999999999 335555544 8899888 46899999999975
No 67
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=3.8e-39 Score=346.94 Aligned_cols=215 Identities=17% Similarity=0.211 Sum_probs=175.9
Q ss_pred hhhccchhhhhhhhHHHHHHHhchhhhc--------c---CCCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEE
Q 024032 33 VKLKLDLPNVSTLTPRLRVLREMERLAL--------I---APDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITI 101 (273)
Q Consensus 33 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~--------~---~~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~ 101 (273)
...-..++.+..+.+|+.++.+.+++.. . +..+.|+++||+|+|+.+..++ |+|+||+|++||.+
T Consensus 1190 ~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~~~~v----L~~isl~I~~Gekv 1265 (1495)
T PLN03232 1190 LRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLPPV----LHGLSFFVSPSEKV 1265 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCCCCcc----cccceEEEcCCCEE
Confidence 3334566778889999999987654311 0 1134699999999997554567 99999999999999
Q ss_pred EEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCccccccccc----CCHHH
Q 024032 102 LLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSRG----FNYNR 171 (273)
Q Consensus 102 aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~~----~~~~~ 171 (273)
|||||||||||||+++|.|+++ ++|+|.+||.++.+ +|+++++++|++.+ |..|+++|.. .++++
T Consensus 1266 aIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~L-----F~gTIr~NL~~~~~~sdee 1340 (1495)
T PLN03232 1266 GVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVL-----FSGTVRFNIDPFSEHNDAD 1340 (1495)
T ss_pred EEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCee-----eCccHHHHcCCCCCCCHHH
Confidence 9999999999999999999999 99999999999864 67899999999985 4559999943 46778
Q ss_pred HHHHHHHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH--HHHHH-HHhc-CC
Q 024032 172 VHEGLEELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK--SSPKY-VLRR-VD 223 (273)
Q Consensus 172 ~~~~l~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~--~~l~~-l~~~-~g 223 (273)
+.++++.++ .+||||||||. |+ +++|+|||||||||+||+. ..+.+ +.+. .+
T Consensus 1341 i~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~ 1420 (1495)
T PLN03232 1341 LWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKS 1420 (1495)
T ss_pred HHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCC
Confidence 888888765 47999999986 55 8999999999999999999 23322 2221 27
Q ss_pred cEEEEc-------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 224 FAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 224 ~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
+|+|+| ..||+|+||++|+|++.|+|+++++++
T Consensus 1421 ~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~~~ 1460 (1495)
T PLN03232 1421 CTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRD 1460 (1495)
T ss_pred CEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCC
Confidence 899998 458999999999999999999999764
No 68
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.4e-39 Score=280.52 Aligned_cols=176 Identities=14% Similarity=0.195 Sum_probs=143.0
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC----CCcc
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN----SSHT 141 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~----~~~~ 141 (273)
++++|++++|. ++++ |+++||++++||++||+||||||||||+++|+|+++ ++|+|.++|.++.. .++.
T Consensus 1 i~~~~~~~~~~--~~~i----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (220)
T cd03265 1 IEVENLVKKYG--DFEA----VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRR 74 (220)
T ss_pred CEEEEEEEEEC--CEEe----eeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhc
Confidence 57899999984 4567 999999999999999999999999999999999998 99999999987642 3467
Q ss_pred EEEEeccchhhhccCCccccccccc-------CC----HHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCC
Q 024032 142 ITMYMEEHNVMRSLQSGFCVYDSRG-------FN----YNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSD 197 (273)
Q Consensus 142 i~~v~q~~~~~~~~~~~~tv~en~~-------~~----~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p 197 (273)
++|++|++.++ ..+|+++|.. .. .+.+.++++.++ .+||||||||. ++ +.+|
T Consensus 75 i~~~~q~~~~~----~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p 150 (220)
T cd03265 75 IGIVFQDLSVD----DELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRP 150 (220)
T ss_pred EEEecCCcccc----ccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 99999998653 3458887732 22 224556666665 67999999986 33 7899
Q ss_pred CEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhh
Q 024032 198 DCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRL 252 (273)
Q Consensus 198 ~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l 252 (273)
++|||||||++||+. +.++++.++.|.|||++ .+||++++|++|+++..++++++
T Consensus 151 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 151 EVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred CEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 999999999999999 33555555447899888 46899999999999998887664
No 69
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.1e-39 Score=278.46 Aligned_cols=171 Identities=20% Similarity=0.268 Sum_probs=138.5
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC---CCccE
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---SSHTI 142 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---~~~~i 142 (273)
++++|++++|. ++++ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++.. .++.+
T Consensus 1 l~~~~l~~~~~--~~~i----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i 74 (213)
T cd03259 1 LELKGLSKTYG--SVRA----LDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNI 74 (213)
T ss_pred CeeeeeEEEeC--Ceee----ecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccE
Confidence 46899999984 4567 999999999999999999999999999999999999 99999999998753 34579
Q ss_pred EEEeccchhhhccCCcccccccccC-------C----HHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCC
Q 024032 143 TMYMEEHNVMRSLQSGFCVYDSRGF-------N----YNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDD 198 (273)
Q Consensus 143 ~~v~q~~~~~~~~~~~~tv~en~~~-------~----~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~ 198 (273)
++++|++.. +..+|+++|..+ . .+++.++++.++ .+||||||||. |+ +.+|+
T Consensus 75 ~~v~q~~~~----~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 150 (213)
T cd03259 75 GMVFQDYAL----FPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPS 150 (213)
T ss_pred EEEcCchhh----ccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCC
Confidence 999998775 344588887421 1 123455666655 57999999987 33 78999
Q ss_pred EEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeec
Q 024032 199 CALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLD 247 (273)
Q Consensus 199 iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g 247 (273)
+|||||||++||+. +.++++.++.|.|||++ .+||++++|++|++++.|
T Consensus 151 ~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 151 LLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999 33455554348899988 458999999999998654
No 70
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-38 Score=294.39 Aligned_cols=193 Identities=12% Similarity=0.126 Sum_probs=152.7
Q ss_pred CCceEEEEEEEEeecCC---eeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC--
Q 024032 64 DGLNELRHKFLSYRSGD---FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-- 137 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~---~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-- 137 (273)
...++++|++++|..+. .++ |+++||+|++||++||+||||||||||+++|+|+++ ++|+|+++|.++..
T Consensus 19 ~~~l~~~nl~~~y~~~~~~~~~~----L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~ 94 (320)
T PRK13631 19 DIILRVKNLYCVFDEKQENELVA----LNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKK 94 (320)
T ss_pred CceEEEEeEEEEeCCCCcccccc----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccc
Confidence 35799999999996431 245 999999999999999999999999999999999999 99999999987632
Q ss_pred -------------------CCccEEEEeccchhhhccCCcccccccccC-------CH----HHHHHHHHHhc-------
Q 024032 138 -------------------SSHTITMYMEEHNVMRSLQSGFCVYDSRGF-------NY----NRVHEGLEELS------- 180 (273)
Q Consensus 138 -------------------~~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~~----~~~~~~l~~~~------- 180 (273)
.++.+++++|++.. .++..|+++|..+ +. +.+.+.++.++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~---~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~ 171 (320)
T PRK13631 95 NNHELITNPYSKKIKNFKELRRRVSMVFQFPEY---QLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLE 171 (320)
T ss_pred ccccccccccccccchHHHHHhcEEEEEECchh---ccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhc
Confidence 34679999998742 1344588887422 22 23344555544
Q ss_pred ---ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEe
Q 024032 181 ---SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALK 239 (273)
Q Consensus 181 ---~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~ 239 (273)
.+||||||||. |+ +.+|++|||||||+|||+. +.+.++.++ |.|||++ ..||++++|+
T Consensus 172 ~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~-g~TiiivtHd~~~~~~~adri~vl~ 250 (320)
T PRK13631 172 RSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKAN-NKTVFVITHTMEHVLEVADEVIVMD 250 (320)
T ss_pred CCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHHHHHHhCCEEEEEE
Confidence 57999999987 33 7899999999999999999 334555544 8999988 4689999999
Q ss_pred CCeEeeecChhhhccChhhHHHhCC
Q 024032 240 AGDSKPLDATKRLFSAPGLRKCSKI 264 (273)
Q Consensus 240 ~G~i~~~g~~~~l~~~~~l~~~~~~ 264 (273)
+|++++.|++++++..+.+...++.
T Consensus 251 ~G~i~~~g~~~~~~~~~~~~~~~~~ 275 (320)
T PRK13631 251 KGKILKTGTPYEIFTDQHIINSTSI 275 (320)
T ss_pred CCEEEEeCCHHHHhcCHHHHHHcCC
Confidence 9999999999999877665544444
No 71
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=7e-39 Score=316.10 Aligned_cols=225 Identities=16% Similarity=0.160 Sum_probs=179.7
Q ss_pred hhhhhhhhhccchhhhhhhhHHHHHHHhchhhhc------cCCCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcE
Q 024032 27 AKFDECVKLKLDLPNVSTLTPRLRVLREMERLAL------IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVIT 100 (273)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~------~~~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~ 100 (273)
..+..+......++++..+.+|+.++++.++... ....+.++++|++|+|+..++++ |+++||++++||+
T Consensus 285 ~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~i----l~~inl~i~~G~~ 360 (571)
T TIGR02203 285 RPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGTRAIERARGDVEFRNVTFRYPGRDRPA----LDSISLVIEPGET 360 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCeEEEEEEEEEcCCCCCcc----ccCeeEEecCCCE
Confidence 3445566666778889999999999886543211 11134699999999997545567 9999999999999
Q ss_pred EEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCcccccccc------cCC
Q 024032 101 ILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSR------GFN 168 (273)
Q Consensus 101 ~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~------~~~ 168 (273)
++|+|+||||||||+++|+|+++ ++|+|.++|.++.+ +++.++|++|++.+ |..|++||. ..+
T Consensus 361 v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l-----f~~Ti~~Ni~~~~~~~~~ 435 (571)
T TIGR02203 361 VALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVL-----FNDTIANNIAYGRTEQAD 435 (571)
T ss_pred EEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCccc-----ccccHHHHHhcCCCCCCC
Confidence 99999999999999999999999 99999999998763 56789999999984 456999983 356
Q ss_pred HHHHHHHHHHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH--H----HHHHH
Q 024032 169 YNRVHEGLEELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK--S----SPKYV 218 (273)
Q Consensus 169 ~~~~~~~l~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~--~----~l~~l 218 (273)
++++.++++.++ ..||||||||. |+ +++|+++||||||++||+. + .+..+
T Consensus 436 ~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~ 515 (571)
T TIGR02203 436 RAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERL 515 (571)
T ss_pred HHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHH
Confidence 777777777654 46999999987 45 8999999999999999999 2 23333
Q ss_pred HhcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccC-hhhHHHh
Q 024032 219 LRRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSA-PGLRKCS 262 (273)
Q Consensus 219 ~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~-~~l~~~~ 262 (273)
.+ ++|+|+| ..||+|++|++|++++.|+++++++. +...+.+
T Consensus 516 ~~--~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~~~~~~~~~~ 565 (571)
T TIGR02203 516 MQ--GRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLARNGLYAQLH 565 (571)
T ss_pred hC--CCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHHcCCHHHHHH
Confidence 22 7899888 56899999999999999999999854 3344333
No 72
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.4e-39 Score=282.64 Aligned_cols=182 Identities=19% Similarity=0.269 Sum_probs=146.6
Q ss_pred ceEEEEEEEEeecCC--eeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----
Q 024032 66 LNELRHKFLSYRSGD--FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN----- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~--~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~----- 137 (273)
+++++|++++|+... .++ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 1 ~i~~~~l~~~~~~~~~~~~i----l~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~ 76 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTA----LKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKE 76 (233)
T ss_pred CeEEecceEEccCCCCceee----eecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHH
Confidence 378999999995321 256 999999999999999999999999999999999999 99999999998753
Q ss_pred ---CCccEEEEeccchhhhccCCccccccccc-------CC----HHHHHHHHHHhc---------ccCCHHHHHHH---
Q 024032 138 ---SSHTITMYMEEHNVMRSLQSGFCVYDSRG-------FN----YNRVHEGLEELS---------SWMSEGVHHNQ--- 191 (273)
Q Consensus 138 ---~~~~i~~v~q~~~~~~~~~~~~tv~en~~-------~~----~~~~~~~l~~~~---------~~LSgGqkq~~--- 191 (273)
.++.+++++|++.++ ..+|+.||.. .. .+.+.+.++.++ .+|||||+||.
T Consensus 77 ~~~~~~~i~~~~q~~~~~----~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la 152 (233)
T cd03258 77 LRKARRRIGMIFQHFNLL----SSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIA 152 (233)
T ss_pred HHHHHhheEEEccCcccC----CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHH
Confidence 146799999998753 3458888732 11 223455666655 67999999986
Q ss_pred Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccC
Q 024032 192 RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSA 255 (273)
Q Consensus 192 r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~ 255 (273)
++ +.+|++|||||||++||+. +.++++.++.|.|||++ .+||++++|++|++++.|+++++...
T Consensus 153 ~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 231 (233)
T cd03258 153 RALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFAN 231 (233)
T ss_pred HHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhcC
Confidence 33 7899999999999999999 33555554448899988 56899999999999999998887653
No 73
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-38 Score=285.81 Aligned_cols=192 Identities=15% Similarity=0.226 Sum_probs=155.1
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----C
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----S 138 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~ 138 (273)
..++++|++++|+ ++.+ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++.. .
T Consensus 10 ~~l~i~~l~~~~~--~~~i----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 83 (265)
T PRK10575 10 TTFALRNVSFRVP--GRTL----LHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAF 83 (265)
T ss_pred ceEEEeeEEEEEC--CEEE----EeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHH
Confidence 4689999999984 4567 999999999999999999999999999999999999 99999999998742 3
Q ss_pred CccEEEEeccchhhhccCCcccccccccC---------------CHHHHHHHHHHhc---------ccCCHHHHHHH---
Q 024032 139 SHTITMYMEEHNVMRSLQSGFCVYDSRGF---------------NYNRVHEGLEELS---------SWMSEGVHHNQ--- 191 (273)
Q Consensus 139 ~~~i~~v~q~~~~~~~~~~~~tv~en~~~---------------~~~~~~~~l~~~~---------~~LSgGqkq~~--- 191 (273)
++.+++++|++.. ++.+|+.+|..+ ..+.+.++++.++ ..|||||+||.
T Consensus 84 ~~~i~~v~q~~~~----~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la 159 (265)
T PRK10575 84 ARKVAYLPQQLPA----AEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIA 159 (265)
T ss_pred hhheEEeccCCCC----CCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHH
Confidence 4579999998764 344577776321 1223555666655 67999999986
Q ss_pred Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 192 RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 192 r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
|+ +.+|++|||||||++||+. +.+.++.++.|.|||++ ..||++++|++|+++..|+++++...+
T Consensus 160 ral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 239 (265)
T PRK10575 160 MLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMRGE 239 (265)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhcCHH
Confidence 33 7899999999999999999 34555554447899888 568999999999999999999988766
Q ss_pred hhHHHhCCce
Q 024032 257 GLRKCSKISF 266 (273)
Q Consensus 257 ~l~~~~~~~~ 266 (273)
.+...|+.+.
T Consensus 240 ~~~~~~~~~~ 249 (265)
T PRK10575 240 TLEQIYGIPM 249 (265)
T ss_pred HHHHHhCCCc
Confidence 6777776543
No 74
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=5.8e-39 Score=346.69 Aligned_cols=214 Identities=17% Similarity=0.202 Sum_probs=175.3
Q ss_pred hhhccchhhhhhhhHHHHHHHhchhhhc--------c---CCCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEE
Q 024032 33 VKLKLDLPNVSTLTPRLRVLREMERLAL--------I---APDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITI 101 (273)
Q Consensus 33 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~--------~---~~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~ 101 (273)
......++.+..+.+|+.++.+.+++.. . +..+.|+++||+|+|+.+..++ |+|+||+|++||.+
T Consensus 1193 ~~~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~V----L~~is~~I~~GekV 1268 (1622)
T PLN03130 1193 LRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELPPV----LHGLSFEISPSEKV 1268 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCCce----ecceeEEEcCCCEE
Confidence 3333456778899999999987654311 0 1135799999999997554567 99999999999999
Q ss_pred EEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCccccccccc----CCHHH
Q 024032 102 LLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSRG----FNYNR 171 (273)
Q Consensus 102 aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~~----~~~~~ 171 (273)
||||+||||||||+++|.|+++ ++|+|.+||.++.+ +|+++++++|++.+ |..|+++|.. .++++
T Consensus 1269 aIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~L-----F~GTIreNLd~~~~~tdee 1343 (1622)
T PLN03130 1269 GIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVL-----FSGTVRFNLDPFNEHNDAD 1343 (1622)
T ss_pred EEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCcc-----ccccHHHHhCcCCCCCHHH
Confidence 9999999999999999999999 99999999999874 67899999999985 4569999943 46778
Q ss_pred HHHHHHHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH--HHHHH-HHh-cCC
Q 024032 172 VHEGLEELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK--SSPKY-VLR-RVD 223 (273)
Q Consensus 172 ~~~~l~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~--~~l~~-l~~-~~g 223 (273)
+.++++.++ ..||||||||. |+ +++|+|||||||||+||+. +.+.+ +.+ ..+
T Consensus 1344 i~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~ 1423 (1622)
T PLN03130 1344 LWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS 1423 (1622)
T ss_pred HHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCC
Confidence 888888765 47999999986 55 8999999999999999999 23322 222 127
Q ss_pred cEEEEc-------eeCCEEEEEeCCeEeeecChhhhccC
Q 024032 224 FAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSA 255 (273)
Q Consensus 224 ~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~ 255 (273)
+|+|+| ..||+|+||++|+|++.|+|++++++
T Consensus 1424 ~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~eLl~~ 1462 (1622)
T PLN03130 1424 CTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSN 1462 (1622)
T ss_pred CEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 899998 45899999999999999999999865
No 75
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=9.5e-39 Score=315.93 Aligned_cols=216 Identities=13% Similarity=0.114 Sum_probs=173.1
Q ss_pred hhhhhhccchhhhhhhhHHHHHHHhchhhh------ccCCCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEE
Q 024032 30 DECVKLKLDLPNVSTLTPRLRVLREMERLA------LIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILL 103 (273)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~------~~~~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~ai 103 (273)
..+......++.+..+.+|+.++++.++.. .....+.+++++++|+|+.++.++ |+++||++++|++++|
T Consensus 271 ~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~I~~~~v~~~y~~~~~~~----l~~i~~~i~~G~~~~i 346 (569)
T PRK10789 271 LALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGSEPVPEGRGELDVNIRQFTYPQTDHPA----LENVNFTLKPGQMLGI 346 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCCCCCCCCcEEEEEEEEECCCCCCcc----ccCeeEEECCCCEEEE
Confidence 344555567788899999999998754321 111134689999999997655566 9999999999999999
Q ss_pred EcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCcccccccc-----cCCHHHH
Q 024032 104 MGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSR-----GFNYNRV 172 (273)
Q Consensus 104 vGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~-----~~~~~~~ 172 (273)
+||||||||||+++|+|+++ ++|+|.++|+++.+ +++.+++++|++.+ |..|++||. ..+.+++
T Consensus 347 vG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l-----f~~ti~~Ni~~~~~~~~~~~~ 421 (569)
T PRK10789 347 CGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFL-----FSDTVANNIALGRPDATQQEI 421 (569)
T ss_pred ECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCee-----ccccHHHHHhcCCCCCCHHHH
Confidence 99999999999999999999 99999999998764 56789999999874 445999983 2355666
Q ss_pred HHHHHHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcC
Q 024032 173 HEGLEELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRV 222 (273)
Q Consensus 173 ~~~l~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~ 222 (273)
.++++.++ ..||||||||. |+ +++|++|||||||++||+. +.++.+. +
T Consensus 422 ~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~- 499 (569)
T PRK10789 422 EHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG-E- 499 (569)
T ss_pred HHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh-C-
Confidence 66665543 46999999986 44 8999999999999999999 2233333 2
Q ss_pred CcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 223 DFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 223 g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
++|+|++ ..||+|++|++|++++.|++++++++.
T Consensus 500 ~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 540 (569)
T PRK10789 500 GRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQS 540 (569)
T ss_pred CCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHcC
Confidence 7899888 458999999999999999999998644
No 76
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-38 Score=279.56 Aligned_cols=175 Identities=18% Similarity=0.203 Sum_probs=141.9
Q ss_pred eEEEEEEEEeecCC--eeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEE
Q 024032 67 NELRHKFLSYRSGD--FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (273)
Q Consensus 67 i~~~~v~~~y~~g~--~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~ 143 (273)
++++|++++|+.+. +++ |+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|+++...++.++
T Consensus 1 l~~~~l~~~~~~~~~~~~i----l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~ 76 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTA----LEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRG 76 (220)
T ss_pred CeEEEEEEEcCCCCcceEE----EeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEE
Confidence 47899999985321 456 999999999999999999999999999999999998 99999999999876677899
Q ss_pred EEeccchhhhccCCcccccccccC-------C----HHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCCE
Q 024032 144 MYMEEHNVMRSLQSGFCVYDSRGF-------N----YNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDDC 199 (273)
Q Consensus 144 ~v~q~~~~~~~~~~~~tv~en~~~-------~----~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~i 199 (273)
+++|++.++ ..+|+.+|..+ . .+.+.++++.++ ..||||||||. |+ +.+|++
T Consensus 77 ~v~q~~~~~----~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~l 152 (220)
T cd03293 77 YVFQQDALL----PWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDV 152 (220)
T ss_pred EEecccccc----cCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 999988753 34588887321 1 234555666655 67999999986 33 789999
Q ss_pred EEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEe--CCeEeeecCh
Q 024032 200 ALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALK--AGDSKPLDAT 249 (273)
Q Consensus 200 LlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~--~G~i~~~g~~ 249 (273)
|||||||++||+. +.++++.++.|.|||++ .+||++++|+ +|++++.+++
T Consensus 153 llLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 153 LLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 9999999999999 33555544447899888 4689999999 7999987764
No 77
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-38 Score=283.19 Aligned_cols=188 Identities=12% Similarity=0.198 Sum_probs=150.8
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC------
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------ 137 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------ 137 (273)
.+++++|+++.|+ ++++ |+++||++++|++++|+||||||||||+++|+|+++ ++|+|.++|.++..
T Consensus 4 ~~l~~~~l~~~~~--~~~~----l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 77 (255)
T PRK11300 4 PLLSVSGLMMRFG--GLLA----VNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQI 77 (255)
T ss_pred ceEEEeeEEEEEC--CEEE----EEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHH
Confidence 4689999999984 4567 999999999999999999999999999999999999 99999999998753
Q ss_pred CCccEEEEeccchhhhccCCcccccccccC----------------------C----HHHHHHHHHHhc---------cc
Q 024032 138 SSHTITMYMEEHNVMRSLQSGFCVYDSRGF----------------------N----YNRVHEGLEELS---------SW 182 (273)
Q Consensus 138 ~~~~i~~v~q~~~~~~~~~~~~tv~en~~~----------------------~----~~~~~~~l~~~~---------~~ 182 (273)
.+..++|++|++.+ +..+|+.+|..+ . .+.+.+.++.++ .+
T Consensus 78 ~~~~i~~~~q~~~~----~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 153 (255)
T PRK11300 78 ARMGVVRTFQHVRL----FREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGN 153 (255)
T ss_pred HhcCeEEeccCccc----CCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhh
Confidence 13457889998775 344588876321 0 123444555554 67
Q ss_pred CCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEe
Q 024032 183 MSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSK 244 (273)
Q Consensus 183 LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~ 244 (273)
||||||||. ++ +.+|++|||||||+|||+. +.+.++.++.|.|||++ .+||++++|++|+++
T Consensus 154 LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~ 233 (255)
T PRK11300 154 LAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPL 233 (255)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEE
Confidence 999999986 33 7899999999999999999 33555555447899988 568999999999999
Q ss_pred eecChhhhccChhhHHHh
Q 024032 245 PLDATKRLFSAPGLRKCS 262 (273)
Q Consensus 245 ~~g~~~~l~~~~~l~~~~ 262 (273)
..|+++++++.+.+.+.|
T Consensus 234 ~~~~~~~~~~~~~~~~~~ 251 (255)
T PRK11300 234 ANGTPEEIRNNPDVIKAY 251 (255)
T ss_pred ecCCHHHHhhChHHHHHH
Confidence 999999988766666554
No 78
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.5e-38 Score=312.92 Aligned_cols=217 Identities=15% Similarity=0.141 Sum_probs=172.7
Q ss_pred hhhhhhhhccchhhhhhhhHHHHHHHhchhhhc-----cCCCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEE
Q 024032 28 KFDECVKLKLDLPNVSTLTPRLRVLREMERLAL-----IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITIL 102 (273)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-----~~~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~a 102 (273)
.+..+......++.+..+.+|+.++++.++... ....+.++++|++|+|+.+++++ |+++||++++|+.++
T Consensus 273 pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~----l~~~~~~i~~G~~~~ 348 (544)
T TIGR01842 273 PIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPAMPLPEPEGHLSVENVTIVPPGGKKPT----LRGISFRLQAGEALA 348 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCCCeEEEEEEEEEcCCCCccc----cccceEEEcCCCEEE
Confidence 344555566777899999999999987643211 11234699999999997555567 999999999999999
Q ss_pred EEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCccccccccc-----CCHHH
Q 024032 103 LMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSRG-----FNYNR 171 (273)
Q Consensus 103 ivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~~-----~~~~~ 171 (273)
|+||||||||||+++|+|+++ ++|+|.++|.++.. +++.+++++|++.+| ..|++||.. .+.++
T Consensus 349 ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf-----~~ti~~Ni~~~~~~~~~~~ 423 (544)
T TIGR01842 349 IIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELF-----PGTVAENIARFGENADPEK 423 (544)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccc-----cccHHHHHhccCCCCCHHH
Confidence 999999999999999999999 99999999998864 567899999998753 458999842 34556
Q ss_pred HHHHHHHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhc
Q 024032 172 VHEGLEELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRR 221 (273)
Q Consensus 172 ~~~~l~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~ 221 (273)
+.++++.++ ..||||||||. |+ +++|++|||||||++||+. +.+..+..+
T Consensus 424 ~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~ 503 (544)
T TIGR01842 424 IIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKAR 503 (544)
T ss_pred HHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhC
Confidence 555544332 57999999987 44 8999999999999999999 223333322
Q ss_pred CCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhcc
Q 024032 222 VDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFS 254 (273)
Q Consensus 222 ~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~ 254 (273)
++|+|++ ..||+|++|++|++++.|+++++.+
T Consensus 504 -~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 504 -GITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred -CCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 7899888 4589999999999999999998754
No 79
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=2.2e-38 Score=290.89 Aligned_cols=178 Identities=16% Similarity=0.199 Sum_probs=146.9
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC----CCc
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN----SSH 140 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~----~~~ 140 (273)
.++++|++++|. +..+ |+++||+|++|+++||+||||||||||+++|+|+++ ++|+|.++|.++.. .++
T Consensus 4 ~i~~~~l~~~~~--~~~~----l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 77 (303)
T TIGR01288 4 AIDLVGVSKSYG--DKVV----VNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARV 77 (303)
T ss_pred EEEEEeEEEEeC--CeEE----EcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhh
Confidence 689999999994 4566 999999999999999999999999999999999998 99999999998743 356
Q ss_pred cEEEEeccchhhhccCCccccccccc-------CCH----HHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCC
Q 024032 141 TITMYMEEHNVMRSLQSGFCVYDSRG-------FNY----NRVHEGLEELS---------SWMSEGVHHNQ---RC-LRS 196 (273)
Q Consensus 141 ~i~~v~q~~~~~~~~~~~~tv~en~~-------~~~----~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~ 196 (273)
.++|++|++.+ +..+|+++|.. .+. +.+.++++.++ ..||||||||. ++ +.+
T Consensus 78 ~i~~v~q~~~~----~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~ 153 (303)
T TIGR01288 78 AIGVVPQFDNL----DPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALIND 153 (303)
T ss_pred cEEEEeccccC----CcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcC
Confidence 79999998775 34458888732 222 22344555554 67999999986 33 789
Q ss_pred CCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhcc
Q 024032 197 DDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFS 254 (273)
Q Consensus 197 p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~ 254 (273)
|++|||||||+|||+. +.++++.++ |.|||++ .+||++++|++|+++..|+++++..
T Consensus 154 p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 154 PQLLILDEPTTGLDPHARHLIWERLRSLLAR-GKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999 345566554 8999999 5689999999999999999988854
No 80
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-38 Score=281.05 Aligned_cols=186 Identities=15% Similarity=0.193 Sum_probs=149.6
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC------C
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------S 138 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------~ 138 (273)
+++++|++++|+ ++.+ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++.. .
T Consensus 5 ~l~~~~l~~~~~--~~~~----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~ 78 (237)
T PRK11614 5 MLSFDKVSAHYG--KIQA----LHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIM 78 (237)
T ss_pred EEEEEeEEEeeC--Ccee----eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHH
Confidence 689999999984 3556 999999999999999999999999999999999999 99999999998753 2
Q ss_pred CccEEEEeccchhhhccCCcccccccccC-----C----HHHHHHHHHHhc----------ccCCHHHHHHH---Hh-cC
Q 024032 139 SHTITMYMEEHNVMRSLQSGFCVYDSRGF-----N----YNRVHEGLEELS----------SWMSEGVHHNQ---RC-LR 195 (273)
Q Consensus 139 ~~~i~~v~q~~~~~~~~~~~~tv~en~~~-----~----~~~~~~~l~~~~----------~~LSgGqkq~~---r~-l~ 195 (273)
++.+++++|++..+ ...|+.+|... . .+.+.++++.+. ..|||||+||. |+ +.
T Consensus 79 ~~~i~~~~q~~~~~----~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~ 154 (237)
T PRK11614 79 REAVAIVPEGRRVF----SRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMS 154 (237)
T ss_pred HhCEEEeccCcccC----CCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHh
Confidence 45699999987653 34588887321 1 122333444431 67999999986 33 78
Q ss_pred CCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChhhHHH
Q 024032 196 SDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPGLRKC 261 (273)
Q Consensus 196 ~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~l~~~ 261 (273)
+|++|||||||++||+. +.++++.++ |.|||++ .+||++++|++|+++..|++++++.++.+.+.
T Consensus 155 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~ 233 (237)
T PRK11614 155 QPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQ-GMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLANEAVRSA 233 (237)
T ss_pred CCCEEEEcCccccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhcCHHHHHH
Confidence 99999999999999999 335556554 8999888 56899999999999999999999876666555
Q ss_pred h
Q 024032 262 S 262 (273)
Q Consensus 262 ~ 262 (273)
|
T Consensus 234 ~ 234 (237)
T PRK11614 234 Y 234 (237)
T ss_pred h
Confidence 5
No 81
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.8e-38 Score=281.62 Aligned_cols=185 Identities=17% Similarity=0.232 Sum_probs=150.5
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC------C
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------S 138 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------~ 138 (273)
+++++|++++|+ ++++ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++.. .
T Consensus 2 ~i~~~~l~~~~~--~~~~----l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~ 75 (242)
T TIGR03411 2 ILYLEGLSVSFD--GFKA----LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIA 75 (242)
T ss_pred eEEEEeeEEEcC--CeEE----eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHH
Confidence 578999999984 4566 999999999999999999999999999999999998 99999999998753 2
Q ss_pred CccEEEEeccchhhhccCCcccccccccC-------------------CHHHHHHHHHHhc---------ccCCHHHHHH
Q 024032 139 SHTITMYMEEHNVMRSLQSGFCVYDSRGF-------------------NYNRVHEGLEELS---------SWMSEGVHHN 190 (273)
Q Consensus 139 ~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------------------~~~~~~~~l~~~~---------~~LSgGqkq~ 190 (273)
++.+++++|++.+ +..+|+.||..+ ..+.+.+.++.++ ..|||||+||
T Consensus 76 ~~~i~~~~q~~~~----~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qr 151 (242)
T TIGR03411 76 RAGIGRKFQKPTV----FENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQW 151 (242)
T ss_pred hcCeeEecccccc----CCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHH
Confidence 3469999998775 334588877321 1224556666655 6799999998
Q ss_pred H---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhh
Q 024032 191 Q---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRL 252 (273)
Q Consensus 191 ~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l 252 (273)
. |+ +.+|++|||||||++||+. +.++++.+ +.|||++ .+||++++|++|++++.|+++++
T Consensus 152 v~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~ 229 (242)
T TIGR03411 152 LEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG--KHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQV 229 (242)
T ss_pred HHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc--CCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHH
Confidence 6 33 7899999999999999999 33455544 6898888 56899999999999999999998
Q ss_pred ccChhhHHHh
Q 024032 253 FSAPGLRKCS 262 (273)
Q Consensus 253 ~~~~~l~~~~ 262 (273)
...+.+.+.|
T Consensus 230 ~~~~~~~~~~ 239 (242)
T TIGR03411 230 QADPRVIEVY 239 (242)
T ss_pred hcCHHHHHHh
Confidence 8766666665
No 82
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-38 Score=284.77 Aligned_cols=193 Identities=14% Similarity=0.181 Sum_probs=155.9
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN----- 137 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~----- 137 (273)
...++++|++++|+ ++.+ |+++||++++||+++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 5 ~~~l~i~~l~~~~~--~~~~----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~ 78 (265)
T PRK10253 5 VARLRGEQLTLGYG--KYTV----AENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKE 78 (265)
T ss_pred ccEEEEEEEEEEEC--CEEE----eeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHH
Confidence 45789999999995 4567 999999999999999999999999999999999999 99999999998753
Q ss_pred CCccEEEEeccchhhhccCCcccccccccC---------------CHHHHHHHHHHhc---------ccCCHHHHHHH--
Q 024032 138 SSHTITMYMEEHNVMRSLQSGFCVYDSRGF---------------NYNRVHEGLEELS---------SWMSEGVHHNQ-- 191 (273)
Q Consensus 138 ~~~~i~~v~q~~~~~~~~~~~~tv~en~~~---------------~~~~~~~~l~~~~---------~~LSgGqkq~~-- 191 (273)
.++.++|++|++.. ++..|+++|... ..+.+.++++.++ ..|||||+||.
T Consensus 79 ~~~~i~~v~q~~~~----~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~l 154 (265)
T PRK10253 79 VARRIGLLAQNATT----PGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWI 154 (265)
T ss_pred HhhheEEeeccCcC----CCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHH
Confidence 34579999999765 334577776321 0123455666655 67999999986
Q ss_pred -Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccC
Q 024032 192 -RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSA 255 (273)
Q Consensus 192 -r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~ 255 (273)
|+ +.+|++|||||||+|||+. +.+.++.++.|.|||++ .+||++++|++|+++..|+++++...
T Consensus 155 aral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 234 (265)
T PRK10253 155 AMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVTA 234 (265)
T ss_pred HHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhhH
Confidence 33 7999999999999999999 34555654448899888 56899999999999999999998776
Q ss_pred hhhHHHhCCce
Q 024032 256 PGLRKCSKISF 266 (273)
Q Consensus 256 ~~l~~~~~~~~ 266 (273)
+.+.+.|+.+.
T Consensus 235 ~~~~~~~~~~~ 245 (265)
T PRK10253 235 ELIERIYGLRC 245 (265)
T ss_pred HHHHHHhCCCc
Confidence 66777777643
No 83
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3e-39 Score=331.73 Aligned_cols=210 Identities=17% Similarity=0.187 Sum_probs=177.5
Q ss_pred cchhhhhhhhHHHHHHHhchhh-h--------ccCCCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCC
Q 024032 37 LDLPNVSTLTPRLRVLREMERL-A--------LIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFS 107 (273)
Q Consensus 37 ~~~~~~~~~~~r~~~~~~~~~~-~--------~~~~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpn 107 (273)
-++..+..+..+++++++.++. . .+...+.|+++||+|+|+... .+ .+|+|+||+|++|+.+||||||
T Consensus 949 Pd~~ka~~Aa~~iF~i~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP-~~--~Il~~l~l~i~~GqTvALVG~S 1025 (1228)
T KOG0055|consen 949 PDISKAKIAAGSIFEILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRP-DV--PVLNNLSLSIRAGQTVALVGPS 1025 (1228)
T ss_pred cHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCC-Cc--hhhcCCcEEecCCCEEEEECCC
Confidence 4566788899999999987652 1 122356799999999998532 12 3499999999999999999999
Q ss_pred CChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCcccccccc-----cCCHHHHHHHH
Q 024032 108 GSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSR-----GFNYNRVHEGL 176 (273)
Q Consensus 108 GsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~-----~~~~~~~~~~l 176 (273)
||||||.+.+|-++|. ++|.|.+||.++++ +|++++.|-|+|.+ |+.|++||. ..+.+++.+++
T Consensus 1026 GsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~L-----F~~TIrENI~YG~~~vs~~eIi~Aa 1100 (1228)
T KOG0055|consen 1026 GSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVL-----FNGTIRENIAYGSEEVSEEEIIEAA 1100 (1228)
T ss_pred CCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchh-----hcccHHHHHhccCCCCCHHHHHHHH
Confidence 9999999999999999 99999999999975 68999999999995 566999993 24678888988
Q ss_pred HHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEE
Q 024032 177 EELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAM 226 (273)
Q Consensus 177 ~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~ti 226 (273)
+.++ .+||||||||. || ++||+||||||.||+||.+ +.+.+... |+|.
T Consensus 1101 k~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~--gRT~ 1178 (1228)
T KOG0055|consen 1101 KLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAME--GRTT 1178 (1228)
T ss_pred HHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhc--CCcE
Confidence 8876 68999999987 55 8999999999999999999 44555554 7777
Q ss_pred EEc-------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 227 VVS-------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 227 iiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
|+| +.||.|+|+++|+|+++|+|++|++..
T Consensus 1179 IvIAHRLSTIqnaD~I~Vi~~G~VvE~GtH~~L~~~~ 1215 (1228)
T KOG0055|consen 1179 IVIAHRLSTIQNADVIAVLKNGKVVEQGTHDELLAKR 1215 (1228)
T ss_pred EEEecchhhhhcCCEEEEEECCEEEecccHHHHHhCC
Confidence 776 679999999999999999999999754
No 84
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-38 Score=287.61 Aligned_cols=190 Identities=15% Similarity=0.183 Sum_probs=150.3
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-------
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------- 137 (273)
+++++|++++|. ++.+ |+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 1 ml~~~~l~~~~~--~~~i----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 74 (271)
T PRK13638 1 MLATSDLWFRYQ--DEPV----LKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLA 74 (271)
T ss_pred CeEEEEEEEEcC--Cccc----ccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHH
Confidence 378999999984 3456 999999999999999999999999999999999999 99999999998741
Q ss_pred CCccEEEEeccchhhhccCCccccccccc-------CCH----HHHHHHHHHhc---------ccCCHHHHHHH---Hh-
Q 024032 138 SSHTITMYMEEHNVMRSLQSGFCVYDSRG-------FNY----NRVHEGLEELS---------SWMSEGVHHNQ---RC- 193 (273)
Q Consensus 138 ~~~~i~~v~q~~~~~~~~~~~~tv~en~~-------~~~----~~~~~~l~~~~---------~~LSgGqkq~~---r~- 193 (273)
.++.++|++|++..+ ++..++.+|.. ... +.+.++++.++ .+||||||||. |+
T Consensus 75 ~~~~i~~v~q~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL 151 (271)
T PRK13638 75 LRQQVATVFQDPEQQ---IFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGAL 151 (271)
T ss_pred HHhheEEEeeChhhc---cccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHH
Confidence 245799999987531 23335655521 122 23445566554 67999999986 33
Q ss_pred cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChhhH
Q 024032 194 LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPGLR 259 (273)
Q Consensus 194 l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~l~ 259 (273)
+.+|++|||||||++||+. +.++++.++ |.|||++ .+||++++|++|++++.|++++++..+...
T Consensus 152 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~ 230 (271)
T PRK13638 152 VLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQ-GNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFACTEAM 230 (271)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcChhHH
Confidence 7899999999999999999 345556544 8899888 568999999999999999999988776666
Q ss_pred HHhCCc
Q 024032 260 KCSKIS 265 (273)
Q Consensus 260 ~~~~~~ 265 (273)
..++.+
T Consensus 231 ~~~~~~ 236 (271)
T PRK13638 231 EQAGLT 236 (271)
T ss_pred HhcCCC
Confidence 656653
No 85
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-38 Score=286.43 Aligned_cols=186 Identities=15% Similarity=0.240 Sum_probs=150.8
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----C
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----S 138 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~ 138 (273)
..++++|++++|+.+.+++ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++.. .
T Consensus 4 ~~l~~~~l~~~~~~~~~~~----l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~ 79 (279)
T PRK13635 4 EIIRVEHISFRYPDAATYA----LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDV 79 (279)
T ss_pred ceEEEEEEEEEeCCCCccc----eeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHH
Confidence 3689999999995433456 999999999999999999999999999999999999 99999999998853 3
Q ss_pred CccEEEEeccchhhhccCCcccccccccC-------CH----HHHHHHHHHhc---------ccCCHHHHHHH---Hh-c
Q 024032 139 SHTITMYMEEHNVMRSLQSGFCVYDSRGF-------NY----NRVHEGLEELS---------SWMSEGVHHNQ---RC-L 194 (273)
Q Consensus 139 ~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~~----~~~~~~l~~~~---------~~LSgGqkq~~---r~-l 194 (273)
++.++|++|++.. +++..|+.+|..+ .. +++.++++.++ ..|||||+||. |+ +
T Consensus 80 ~~~i~~~~q~~~~---~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~ 156 (279)
T PRK13635 80 RRQVGMVFQNPDN---QFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLA 156 (279)
T ss_pred hhheEEEEeCHHH---hcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 4679999999742 1445688888432 22 23455666555 68999999986 33 7
Q ss_pred CCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccChh
Q 024032 195 RSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSAPG 257 (273)
Q Consensus 195 ~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~~ 257 (273)
.+|++|||||||+|||+. +.++++.++.|.|||++ ..||++++|++|++++.|++++++....
T Consensus 157 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 232 (279)
T PRK13635 157 LQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKSGH 232 (279)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcCHH
Confidence 999999999999999999 34556655458899998 3489999999999999999998876543
No 86
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1.2e-38 Score=343.64 Aligned_cols=218 Identities=18% Similarity=0.184 Sum_probs=179.4
Q ss_pred hhhhhhccchhhhhhhhHHHHHHHhchhhhc--------c---CCCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCC
Q 024032 30 DECVKLKLDLPNVSTLTPRLRVLREMERLAL--------I---APDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPV 98 (273)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~--------~---~~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~G 98 (273)
..+...-.++..+..+.+|+.++.+.+++.. + +..+.|+++||+++|+.+..++ |+|+||+|++|
T Consensus 1237 ~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~v----L~~is~~I~~G 1312 (1522)
T TIGR00957 1237 NWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDLDLV----LRHINVTIHGG 1312 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCccc----ccceeEEEcCC
Confidence 3445555677888999999999987653311 1 1235799999999997654566 99999999999
Q ss_pred cEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCccccccccc----CC
Q 024032 99 ITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSRG----FN 168 (273)
Q Consensus 99 e~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~~----~~ 168 (273)
|.+||||+||||||||+++|.|+++ ++|+|.+||.++.+ +|+++++++|++.+ |..|+++|.. .+
T Consensus 1313 ekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~L-----F~gTIr~NLdp~~~~s 1387 (1522)
T TIGR00957 1313 EKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVL-----FSGSLRMNLDPFSQYS 1387 (1522)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcc-----cCccHHHHcCcccCCC
Confidence 9999999999999999999999999 99999999999874 67899999999985 4559999954 46
Q ss_pred HHHHHHHHHHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH--HHHHH-HHh-
Q 024032 169 YNRVHEGLEELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK--SSPKY-VLR- 220 (273)
Q Consensus 169 ~~~~~~~l~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~--~~l~~-l~~- 220 (273)
++++.++++.++ ..||||||||. |+ +++|+|||||||||+||+. ..+.+ +.+
T Consensus 1388 deei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~ 1467 (1522)
T TIGR00957 1388 DEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQ 1467 (1522)
T ss_pred HHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 788888888765 56999999986 55 8999999999999999999 23322 222
Q ss_pred cCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 221 RVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 221 ~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
..++|+|+| ..+|+|+||++|+|++.|+|++++++.
T Consensus 1468 ~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~eLl~~~ 1510 (1522)
T TIGR00957 1468 FEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQR 1510 (1522)
T ss_pred cCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhCC
Confidence 127899988 458999999999999999999998653
No 87
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-38 Score=280.27 Aligned_cols=186 Identities=12% Similarity=0.186 Sum_probs=150.7
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC------C
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------S 138 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------~ 138 (273)
++++++++++|+ ++++ |+++||++++|++++|+||||||||||+++|+|+++ ++|+|.++|.++.. .
T Consensus 3 ~l~~~~l~~~~~--~~~~----l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 76 (241)
T PRK10895 3 TLTAKNLAKAYK--GRRV----VEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARA 76 (241)
T ss_pred eEEEeCcEEEeC--CEEE----EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHH
Confidence 588999999984 4567 999999999999999999999999999999999999 99999999998753 2
Q ss_pred CccEEEEeccchhhhccCCcccccccccC--------C----HHHHHHHHHHhc---------ccCCHHHHHHH---Hh-
Q 024032 139 SHTITMYMEEHNVMRSLQSGFCVYDSRGF--------N----YNRVHEGLEELS---------SWMSEGVHHNQ---RC- 193 (273)
Q Consensus 139 ~~~i~~v~q~~~~~~~~~~~~tv~en~~~--------~----~~~~~~~l~~~~---------~~LSgGqkq~~---r~- 193 (273)
++.+++++|++.+ +..+|+.||... + ...+.+.++.++ ..|||||+||. |+
T Consensus 77 ~~~i~~~~q~~~~----~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral 152 (241)
T PRK10895 77 RRGIGYLPQEASI----FRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARAL 152 (241)
T ss_pred HhCeEEeccCCcc----cccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHH
Confidence 4579999998765 334588887321 1 123455556554 67999999986 33
Q ss_pred cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChhhH
Q 024032 194 LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPGLR 259 (273)
Q Consensus 194 l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~l~ 259 (273)
+.+|++|||||||++||+. +.++.+.++ |.|||++ ..||++++|++|++++.|++++++..+.+.
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~ 231 (241)
T PRK10895 153 AANPKFILLDEPFAGVDPISVIDIKRIIEHLRDS-GLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQDEHVK 231 (241)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhc-CCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhcChhHh
Confidence 7899999999999999999 234555544 8899988 568999999999999999999998766666
Q ss_pred HHh
Q 024032 260 KCS 262 (273)
Q Consensus 260 ~~~ 262 (273)
+.|
T Consensus 232 ~~~ 234 (241)
T PRK10895 232 RVY 234 (241)
T ss_pred Hhh
Confidence 655
No 88
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-38 Score=306.01 Aligned_cols=207 Identities=17% Similarity=0.171 Sum_probs=168.7
Q ss_pred hhhhhhHHHHHHHhchhhh-------ccCCCCceEE--EEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChH
Q 024032 41 NVSTLTPRLRVLREMERLA-------LIAPDGLNEL--RHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGK 111 (273)
Q Consensus 41 ~~~~~~~r~~~~~~~~~~~-------~~~~~~~i~~--~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGK 111 (273)
.+.++.+.+..+++.+... .......+++ +|+++.|+.|+ ++ ++++||++++|+.+||||+|||||
T Consensus 286 ~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~~ei~~~~l~~~y~~g~-~~----l~~l~~t~~~g~~talvG~SGaGK 360 (559)
T COG4988 286 AGEAAADKLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPDGK-PA----LSDLNLTIKAGQLTALVGASGAGK 360 (559)
T ss_pred hhhhHHHHHHHHhcCCCCCCCCccccccccCCCceeeecceEEecCCCC-cc----cCCceeEecCCcEEEEECCCCCCH
Confidence 4466777777777655421 1111223444 59999998765 66 999999999999999999999999
Q ss_pred HHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCcccccccc-----cCCHHHHHHHHHHhc
Q 024032 112 SSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSR-----GFNYNRVHEGLEELS 180 (273)
Q Consensus 112 STLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~-----~~~~~~~~~~l~~~~ 180 (273)
|||+++|+|+++ ++|+|.++|.+..+ ++++++++.|++.+ |..|++||. ..+++++.++++.++
T Consensus 361 STLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~l-----f~gTireNi~l~~~~~s~e~i~~al~~a~ 435 (559)
T COG4988 361 STLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYL-----FAGTIRENILLARPDASDEEIIAALDQAG 435 (559)
T ss_pred HHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCcc-----ccccHHHHhhccCCcCCHHHHHHHHHHhc
Confidence 999999999999 99999999998864 67999999999985 455999994 356788888888876
Q ss_pred -------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--
Q 024032 181 -------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-- 229 (273)
Q Consensus 181 -------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-- 229 (273)
..|||||+||. |+ +++++++||||||++||.+ +.+.++.+ ++|++++
T Consensus 436 l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~--~ktvl~itH 513 (559)
T COG4988 436 LLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK--QKTVLVITH 513 (559)
T ss_pred HHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh--CCeEEEEEc
Confidence 45999999987 55 7899999999999999999 33455665 6898888
Q ss_pred -----eeCCEEEEEeCCeEeeecChhhhccChhhH
Q 024032 230 -----NIAEIYKALKAGDSKPLDATKRLFSAPGLR 259 (273)
Q Consensus 230 -----~~ad~i~vl~~G~i~~~g~~~~l~~~~~l~ 259 (273)
..+|+|++|++|++++.|+++++..+....
T Consensus 514 rl~~~~~~D~I~vld~G~l~~~g~~~~L~~~~~~y 548 (559)
T COG4988 514 RLEDAADADRIVVLDNGRLVEQGTHEELSEKQGLY 548 (559)
T ss_pred ChHHHhcCCEEEEecCCceeccCCHHHHhhcCcHH
Confidence 458999999999999999999998665443
No 89
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=3.5e-38 Score=279.21 Aligned_cols=187 Identities=16% Similarity=0.183 Sum_probs=148.9
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC----CCc
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN----SSH 140 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~----~~~ 140 (273)
.++++|++++|+ ++++ |+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|.++.. .++
T Consensus 1 ~l~~~~l~~~~~--~~~~----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~ 74 (236)
T TIGR03864 1 ALEVAGLSFAYG--ARRA----LDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALA 74 (236)
T ss_pred CEEEEeeEEEEC--CEEE----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhh
Confidence 368999999984 4567 999999999999999999999999999999999999 99999999998753 235
Q ss_pred cEEEEeccchhhhccCCccccccccc-------CC----HHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCC
Q 024032 141 TITMYMEEHNVMRSLQSGFCVYDSRG-------FN----YNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRS 196 (273)
Q Consensus 141 ~i~~v~q~~~~~~~~~~~~tv~en~~-------~~----~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~ 196 (273)
.+++++|++.. ++.+|+.+|.. .. .+.+.+.++.++ ..|||||+||. |+ +.+
T Consensus 75 ~i~~~~q~~~~----~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~ 150 (236)
T TIGR03864 75 RLGVVFQQPTL----DLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHR 150 (236)
T ss_pred hEEEeCCCCCC----cccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 78999998764 34568888732 11 123455566554 67999999986 33 799
Q ss_pred CCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccC---hhhHH
Q 024032 197 DDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSA---PGLRK 260 (273)
Q Consensus 197 p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~---~~l~~ 260 (273)
|++|||||||+|||+. +.++++.++.|.|+|++ ..||++++|++|++++.++++++... ..+.+
T Consensus 151 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~ 230 (236)
T TIGR03864 151 PALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGALGGADLEA 230 (236)
T ss_pred CCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHHcCcccHHH
Confidence 9999999999999999 33555554348899888 34899999999999999999888754 23545
Q ss_pred Hh
Q 024032 261 CS 262 (273)
Q Consensus 261 ~~ 262 (273)
.|
T Consensus 231 ~~ 232 (236)
T TIGR03864 231 AF 232 (236)
T ss_pred HH
Confidence 44
No 90
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=3.9e-38 Score=292.81 Aligned_cols=187 Identities=13% Similarity=0.177 Sum_probs=150.7
Q ss_pred CCceEEEEEEEEeecC-----------CeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEEC
Q 024032 64 DGLNELRHKFLSYRSG-----------DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFA 131 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g-----------~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~ 131 (273)
+.+++++|++++|..+ ...+ |+++||+|++||++||+|+||||||||+++|+|+++ ++|+|.++
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~----l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~ 81 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKA----VDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWL 81 (331)
T ss_pred CceEEEeCeEEEECCCCccccccccCCceEE----EeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEEC
Confidence 3479999999999632 1334 999999999999999999999999999999999999 99999999
Q ss_pred CeeCCC--------CCccEEEEeccchhhhccCCcccccccc---------cCCHH----HHHHHHHHhc----------
Q 024032 132 QTSSGN--------SSHTITMYMEEHNVMRSLQSGFCVYDSR---------GFNYN----RVHEGLEELS---------- 180 (273)
Q Consensus 132 g~~i~~--------~~~~i~~v~q~~~~~~~~~~~~tv~en~---------~~~~~----~~~~~l~~~~---------- 180 (273)
|+++.. .++.++|++|++... +...+||.+|. ..+.+ .+.+.++.++
T Consensus 82 G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~--l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p 159 (331)
T PRK15079 82 GKDLLGMKDDEWRAVRSDIQMIFQDPLAS--LNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYP 159 (331)
T ss_pred CEECCcCCHHHHHHHhCceEEEecCchhh--cCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCc
Confidence 998853 346799999997411 13345888873 12322 3445555544
Q ss_pred ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCe
Q 024032 181 SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGD 242 (273)
Q Consensus 181 ~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~ 242 (273)
.+|||||+||+ |+ +.+|++|||||||++||+. ++++++.++.|.|+|+| .+||+|++|++|+
T Consensus 160 ~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ 239 (331)
T PRK15079 160 HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGH 239 (331)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 67999999987 33 7999999999999999999 34566666558999999 5689999999999
Q ss_pred EeeecChhhhccCh
Q 024032 243 SKPLDATKRLFSAP 256 (273)
Q Consensus 243 i~~~g~~~~l~~~~ 256 (273)
+++.|++++++.++
T Consensus 240 ive~g~~~~i~~~~ 253 (331)
T PRK15079 240 AVELGTYDEVYHNP 253 (331)
T ss_pred EEEEcCHHHHHcCC
Confidence 99999999998654
No 91
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=4.8e-38 Score=282.33 Aligned_cols=191 Identities=16% Similarity=0.207 Sum_probs=153.5
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CC
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SS 139 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~ 139 (273)
+++++|++++|+ ++.+ |+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|.++.. .+
T Consensus 2 ~l~~~~l~~~~~--~~~i----l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~ 75 (258)
T PRK13548 2 MLEARNLSVRLG--GRTL----LDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELA 75 (258)
T ss_pred eEEEEeEEEEeC--Ceee----eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhh
Confidence 478999999984 4567 999999999999999999999999999999999999 99999999998753 34
Q ss_pred ccEEEEeccchhhhccCCcccccccccC-----------CHHHHHHHHHHhc---------ccCCHHHHHHH---Hh-c-
Q 024032 140 HTITMYMEEHNVMRSLQSGFCVYDSRGF-----------NYNRVHEGLEELS---------SWMSEGVHHNQ---RC-L- 194 (273)
Q Consensus 140 ~~i~~v~q~~~~~~~~~~~~tv~en~~~-----------~~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l- 194 (273)
+.+++++|++.+ ++.+|++||..+ ..+.+.++++.++ .+||||||||. |+ +
T Consensus 76 ~~i~~~~q~~~~----~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~ 151 (258)
T PRK13548 76 RRRAVLPQHSSL----SFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQ 151 (258)
T ss_pred hheEEEccCCcC----CCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 578999998764 345688887321 1223555666655 67999999986 34 4
Q ss_pred -----CCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccC
Q 024032 195 -----RSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSA 255 (273)
Q Consensus 195 -----~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~ 255 (273)
.+|++|||||||++||+. +.++++.++.|.|||++ .+||++++|++|+++..|+++++...
T Consensus 152 ~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 231 (258)
T PRK13548 152 LWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLTP 231 (258)
T ss_pred ccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHhCh
Confidence 489999999999999999 34556652348899988 46899999999999999999998876
Q ss_pred hhhHHHhCCce
Q 024032 256 PGLRKCSKISF 266 (273)
Q Consensus 256 ~~l~~~~~~~~ 266 (273)
+.+...|+...
T Consensus 232 ~~~~~~~~~~~ 242 (258)
T PRK13548 232 ETLRRVYGADV 242 (258)
T ss_pred HHHHHHhCCCc
Confidence 65666666443
No 92
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-38 Score=282.39 Aligned_cols=190 Identities=15% Similarity=0.233 Sum_probs=154.0
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CC
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SS 139 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~ 139 (273)
+++++|++++|. ++.+ |+++||++++|++++|+||||||||||+++|+|+++ ++|+|.++|.++.. .+
T Consensus 2 ~l~~~~l~~~~~--~~~i----l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 75 (255)
T PRK11231 2 TLRTENLTVGYG--TKRI----LNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLA 75 (255)
T ss_pred EEEEEeEEEEEC--CEEE----EeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHh
Confidence 478999999984 4567 999999999999999999999999999999999999 99999999988643 34
Q ss_pred ccEEEEeccchhhhccCCcccccccccC---------------CHHHHHHHHHHhc---------ccCCHHHHHHH---H
Q 024032 140 HTITMYMEEHNVMRSLQSGFCVYDSRGF---------------NYNRVHEGLEELS---------SWMSEGVHHNQ---R 192 (273)
Q Consensus 140 ~~i~~v~q~~~~~~~~~~~~tv~en~~~---------------~~~~~~~~l~~~~---------~~LSgGqkq~~---r 192 (273)
+.++|++|++.. +..+|++||..+ ..+.+.++++.++ ..|||||+||. |
T Consensus 76 ~~i~~~~q~~~~----~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lar 151 (255)
T PRK11231 76 RRLALLPQHHLT----PEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAM 151 (255)
T ss_pred hheEEecccCCC----CCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHH
Confidence 569999998764 334577776321 1123455566554 67999999986 3
Q ss_pred h-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChh
Q 024032 193 C-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPG 257 (273)
Q Consensus 193 ~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~ 257 (273)
+ +.+|++|||||||+|||+. +.++++.++ |.|||++ ++||++++|++|+++..|++++++..+.
T Consensus 152 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~ 230 (255)
T PRK11231 152 VLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQ-GKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMTPGL 230 (255)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcCHHH
Confidence 3 7899999999999999999 335555544 8899888 5689999999999999999999987777
Q ss_pred hHHHhCCce
Q 024032 258 LRKCSKISF 266 (273)
Q Consensus 258 l~~~~~~~~ 266 (273)
+...|+...
T Consensus 231 ~~~~~~~~~ 239 (255)
T PRK11231 231 LRTVFDVEA 239 (255)
T ss_pred HHHHhCCCe
Confidence 788886543
No 93
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=4.1e-38 Score=279.26 Aligned_cols=182 Identities=15% Similarity=0.199 Sum_probs=147.5
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-------
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------- 137 (273)
+++++|++++|+ ++++ |+++||++++||+++|+||||||||||+++|+|+++ ++|+|.++|.++..
T Consensus 1 ~l~~~~l~~~~~--~~~i----l~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 74 (240)
T PRK09493 1 MIEFKNVSKHFG--PTQV----LHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERL 74 (240)
T ss_pred CEEEEeEEEEEC--CeEE----eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHH
Confidence 368999999984 4567 999999999999999999999999999999999999 99999999998753
Q ss_pred CCccEEEEeccchhhhccCCcccccccccC--------C----HHHHHHHHHHhc---------ccCCHHHHHHH---Hh
Q 024032 138 SSHTITMYMEEHNVMRSLQSGFCVYDSRGF--------N----YNRVHEGLEELS---------SWMSEGVHHNQ---RC 193 (273)
Q Consensus 138 ~~~~i~~v~q~~~~~~~~~~~~tv~en~~~--------~----~~~~~~~l~~~~---------~~LSgGqkq~~---r~ 193 (273)
.++.++|++|++.. ++.+|+++|..+ . .+.+.++++.++ ..||+||+||. |+
T Consensus 75 ~~~~i~~~~q~~~~----~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~a 150 (240)
T PRK09493 75 IRQEAGMVFQQFYL----FPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARA 150 (240)
T ss_pred HhhceEEEeccccc----CCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHH
Confidence 24578999998765 344588887422 1 123445566554 67999999986 33
Q ss_pred -cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChhh
Q 024032 194 -LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPGL 258 (273)
Q Consensus 194 -l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~l 258 (273)
+.+|++|||||||++||+. +.++++.++ |.|||++ .+||++++|++|++++.|+++++.+.+..
T Consensus 151 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~ 229 (240)
T PRK09493 151 LAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEE-GMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNPPS 229 (240)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcCCch
Confidence 7899999999999999999 335555544 8899888 46899999999999999999998765543
No 94
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=3.4e-38 Score=312.82 Aligned_cols=213 Identities=15% Similarity=0.165 Sum_probs=166.7
Q ss_pred hhhccchhhhhhhhHHHHHHHhchhhh--------ccCCCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEE
Q 024032 33 VKLKLDLPNVSTLTPRLRVLREMERLA--------LIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLM 104 (273)
Q Consensus 33 ~~~~~~~~~~~~~~~r~~~~~~~~~~~--------~~~~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aiv 104 (273)
......+..+..+..|+.++++.++.. .....+.++++|++|+|+. ++++ |+++||++++|++++|+
T Consensus 293 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~-~~~i----L~~inl~i~~G~~v~Iv 367 (588)
T PRK13657 293 VAFINQVFMAAPKLEEFFEVEDAVPDVRDPPGAIDLGRVKGAVEFDDVSFSYDN-SRQG----VEDVSFEAKPGQTVAIV 367 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCCcCCCCCeEEEEEEEEEeCC-CCce----ecceeEEECCCCEEEEE
Confidence 333444566777777777776543211 0011236999999999963 3456 99999999999999999
Q ss_pred cCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCcccccccc-----cCCHHHHH
Q 024032 105 GFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSR-----GFNYNRVH 173 (273)
Q Consensus 105 GpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~-----~~~~~~~~ 173 (273)
|+||||||||+|+|+|+++ ++|+|.++|.++.+ +++.++|++|++.+ |..|++||. ..+++++.
T Consensus 368 G~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l-----f~~Ti~~Ni~~~~~~~~d~~i~ 442 (588)
T PRK13657 368 GPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGL-----FNRSIEDNIRVGRPDATDEEMR 442 (588)
T ss_pred CCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCccc-----ccccHHHHHhcCCCCCCHHHHH
Confidence 9999999999999999999 99999999998874 56889999999884 456999983 33466777
Q ss_pred HHHHHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH--HHH-HHHHh-cCCcE
Q 024032 174 EGLEELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK--SSP-KYVLR-RVDFA 225 (273)
Q Consensus 174 ~~l~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~--~~l-~~l~~-~~g~t 225 (273)
++++.++ ..||||||||. |+ +++|++||||||||+||+. ..+ +.+.+ ..++|
T Consensus 443 ~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~t 522 (588)
T PRK13657 443 AAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRT 522 (588)
T ss_pred HHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCE
Confidence 6666554 46999999986 44 8999999999999999999 222 22322 12789
Q ss_pred EEEc-------eeCCEEEEEeCCeEeeecChhhhccC
Q 024032 226 MVVS-------NIAEIYKALKAGDSKPLDATKRLFSA 255 (273)
Q Consensus 226 iiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~ 255 (273)
+|+| +.||+|++|++|++++.|++++++..
T Consensus 523 vIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~~ 559 (588)
T PRK13657 523 TFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVAR 559 (588)
T ss_pred EEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHHC
Confidence 9888 45899999999999999999999744
No 95
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=2.9e-38 Score=285.35 Aligned_cols=182 Identities=18% Similarity=0.210 Sum_probs=148.0
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN----- 137 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~----- 137 (273)
+..++++|++++|. ++.+ |+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 5 ~~~l~~~~l~~~~~--~~~i----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 78 (269)
T PRK11831 5 ANLVDMRGVSFTRG--NRCI----FDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSR 78 (269)
T ss_pred cceEEEeCeEEEEC--CEEE----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhh
Confidence 34789999999984 4567 999999999999999999999999999999999998 99999999998752
Q ss_pred ---CCccEEEEeccchhhhccCCcccccccccC--------CH----HHHHHHHHHhc---------ccCCHHHHHHH--
Q 024032 138 ---SSHTITMYMEEHNVMRSLQSGFCVYDSRGF--------NY----NRVHEGLEELS---------SWMSEGVHHNQ-- 191 (273)
Q Consensus 138 ---~~~~i~~v~q~~~~~~~~~~~~tv~en~~~--------~~----~~~~~~l~~~~---------~~LSgGqkq~~-- 191 (273)
.++.+++++|++.+ +..+|+.||..+ +. +.+.+.++.++ .+||||||||.
T Consensus 79 ~~~~~~~i~~v~q~~~~----~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~l 154 (269)
T PRK11831 79 LYTVRKRMSMLFQSGAL----FTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAAL 154 (269)
T ss_pred HHHHhhcEEEEeccccc----CCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHH
Confidence 24568999998765 334588887321 11 23445566655 67999999987
Q ss_pred -Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccC
Q 024032 192 -RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSA 255 (273)
Q Consensus 192 -r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~ 255 (273)
|+ +.+|++|||||||++||+. +.++++.++.|.|||++ .+||++++|++|++++.|+++++++.
T Consensus 155 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 234 (269)
T PRK11831 155 ARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQAN 234 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhcC
Confidence 33 7899999999999999999 34555654447899888 45899999999999999999998764
No 96
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=3.7e-38 Score=275.83 Aligned_cols=177 Identities=18% Similarity=0.211 Sum_probs=142.4
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC------CC
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------SS 139 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------~~ 139 (273)
++++|++++|. ++++ |+++||++++|+++||+||||||||||+++|+|+++ ++|+|.++|.++.. .+
T Consensus 1 l~~~~l~~~~~--~~~~----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (222)
T cd03224 1 LEVENLNAGYG--KSQI----LFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERAR 74 (222)
T ss_pred CEEeeEEeecC--CeeE----eeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHh
Confidence 57899999884 4566 999999999999999999999999999999999999 99999999998753 24
Q ss_pred ccEEEEeccchhhhccCCcccccccccC---------CHHHHHHHHHHhc----------ccCCHHHHHHH---Hh-cCC
Q 024032 140 HTITMYMEEHNVMRSLQSGFCVYDSRGF---------NYNRVHEGLEELS----------SWMSEGVHHNQ---RC-LRS 196 (273)
Q Consensus 140 ~~i~~v~q~~~~~~~~~~~~tv~en~~~---------~~~~~~~~l~~~~----------~~LSgGqkq~~---r~-l~~ 196 (273)
+.+++++|++.+ +..+|+++|..+ ..+.+.+.++.+. .+||||||||. |+ +.+
T Consensus 75 ~~i~~~~q~~~~----~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~ 150 (222)
T cd03224 75 AGIGYVPEGRRI----FPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSR 150 (222)
T ss_pred cCeEEecccccc----CCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcC
Confidence 569999999875 344588887321 1122334444441 57999999986 33 789
Q ss_pred CCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhcc
Q 024032 197 DDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFS 254 (273)
Q Consensus 197 p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~ 254 (273)
|++|||||||++||+. +.++++.++ |.|||++ .+||++++|++|+++..|++++++.
T Consensus 151 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 151 PKLLLLDEPSEGLAPKIVEEIFEAIRELRDE-GVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221 (222)
T ss_pred CCEEEECCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence 9999999999999999 345555543 8899888 5689999999999999998887653
No 97
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=2.2e-38 Score=277.11 Aligned_cols=176 Identities=13% Similarity=0.169 Sum_probs=142.2
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC----CCcc
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN----SSHT 141 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~----~~~~ 141 (273)
++++|+++.|..+.+++ |+++||++++||+++|+||||||||||+++|+|+++ ++|+|.++|.++.. .++.
T Consensus 1 l~~~~l~~~~~~~~~~i----l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (220)
T cd03263 1 LQIRNLTKTYKKGTKPA----VDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQS 76 (220)
T ss_pred CEEEeeEEEeCCCCcee----ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhh
Confidence 57899999995432567 999999999999999999999999999999999998 99999999998753 3567
Q ss_pred EEEEeccchhhhccCCccccccccc-------CCH----HHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCC
Q 024032 142 ITMYMEEHNVMRSLQSGFCVYDSRG-------FNY----NRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSD 197 (273)
Q Consensus 142 i~~v~q~~~~~~~~~~~~tv~en~~-------~~~----~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p 197 (273)
+++++|++.+ +...|+.+|.. ... +.+.++++.++ .+||+||+||. |+ +.+|
T Consensus 77 i~~v~q~~~~----~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 152 (220)
T cd03263 77 LGYCPQFDAL----FDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGP 152 (220)
T ss_pred EEEecCcCCc----cccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCC
Confidence 9999998765 33458888732 121 23455566554 67999999986 33 7899
Q ss_pred CEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhh
Q 024032 198 DCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRL 252 (273)
Q Consensus 198 ~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l 252 (273)
++|||||||++||+. +.++++.+ +.|||++ .+||++++|++|++++.|+++++
T Consensus 153 ~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 153 SVLLLDEPTSGLDPASRRAIWDLILEVRK--GRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 999999999999999 33455543 5888888 56899999999999999988764
No 98
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.9e-39 Score=302.99 Aligned_cols=206 Identities=15% Similarity=0.167 Sum_probs=169.8
Q ss_pred chhhhhhhhHHHHHHHhchhhhc--------cCCCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCC
Q 024032 38 DLPNVSTLTPRLRVLREMERLAL--------IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGS 109 (273)
Q Consensus 38 ~~~~~~~~~~r~~~~~~~~~~~~--------~~~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGs 109 (273)
.+|.+..-++++.++++.+++.. ....+.|+++||+|.|..+ +++ |+||||++++|+.+|||||||+
T Consensus 501 ~iQ~nfiDmEnmfdllkee~eVvd~P~a~pl~~~~G~i~fsnvtF~Y~p~-k~v----l~disF~v~pGktvAlVG~SGa 575 (790)
T KOG0056|consen 501 SIQKNFIDMENMFDLLKEEPEVVDLPGAPPLKVTQGKIEFSNVTFAYDPG-KPV----LSDISFTVQPGKTVALVGPSGA 575 (790)
T ss_pred HHHHhhhhHHHHHHHhhcCchhhcCCCCCCccccCCeEEEEEeEEecCCC-Cce----eecceEEecCCcEEEEECCCCC
Confidence 34667777788888877665421 1235689999999999864 677 9999999999999999999999
Q ss_pred hHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCcccccccc-----cCCHHHHHHHHHH
Q 024032 110 GKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSR-----GFNYNRVHEGLEE 178 (273)
Q Consensus 110 GKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~-----~~~~~~~~~~l~~ 178 (273)
||||++++|.++++ .+|+|.|||+|++. +|+.||.|+||..+ |+.|+..|. ..+.+++.++++.
T Consensus 576 GKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvL-----FNdTI~yNIryak~~AsneevyaAAkA 650 (790)
T KOG0056|consen 576 GKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVL-----FNDTILYNIRYAKPSASNEEVYAAAKA 650 (790)
T ss_pred chhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCccee-----ecceeeeheeecCCCCChHHHHHHHHH
Confidence 99999999999999 99999999999973 78899999999985 455888883 4456777766665
Q ss_pred hc--------------------ccCCHHHHHHHHh----cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEE
Q 024032 179 LS--------------------SWMSEGVHHNQRC----LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVV 228 (273)
Q Consensus 179 ~~--------------------~~LSgGqkq~~r~----l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiii 228 (273)
+. -.||||||||+++ +++|.+++|||.||+||.. ..+.+++. ++|-|+
T Consensus 651 A~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca--~RTtIV 728 (790)
T KOG0056|consen 651 AQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA--NRTTIV 728 (790)
T ss_pred hhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc--CCceEE
Confidence 54 5699999998733 8999999999999999988 33566776 555554
Q ss_pred c-------eeCCEEEEEeCCeEeeecChhhhccC
Q 024032 229 S-------NIAEIYKALKAGDSKPLDATKRLFSA 255 (273)
Q Consensus 229 v-------~~ad~i~vl~~G~i~~~g~~~~l~~~ 255 (273)
| -+||.|+|+++|+|++.|.|+|++..
T Consensus 729 vAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~r 762 (790)
T KOG0056|consen 729 VAHRLSTIVNADLILVISNGRIVERGRHEELLKR 762 (790)
T ss_pred EeeeehheecccEEEEEeCCeEeecCcHHHHHhc
Confidence 4 56899999999999999999999865
No 99
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.5e-38 Score=284.41 Aligned_cols=193 Identities=13% Similarity=0.172 Sum_probs=154.2
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----C
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----S 138 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~ 138 (273)
.+++++|++++|+.+++++ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++.. .
T Consensus 6 ~~l~~~nl~~~~~~~~~~i----l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~ 81 (271)
T PRK13632 6 VMIKVENVSFSYPNSENNA----LKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEI 81 (271)
T ss_pred eEEEEEeEEEEcCCCCccc----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHH
Confidence 4789999999996444556 999999999999999999999999999999999999 99999999998753 3
Q ss_pred CccEEEEeccchhhhccCCccccccccc-------CCHH----HHHHHHHHhc---------ccCCHHHHHHH---Hh-c
Q 024032 139 SHTITMYMEEHNVMRSLQSGFCVYDSRG-------FNYN----RVHEGLEELS---------SWMSEGVHHNQ---RC-L 194 (273)
Q Consensus 139 ~~~i~~v~q~~~~~~~~~~~~tv~en~~-------~~~~----~~~~~l~~~~---------~~LSgGqkq~~---r~-l 194 (273)
++.++|++|++... ++..|++||.. +..+ .+.++++.++ .+|||||+||. |+ +
T Consensus 82 ~~~i~~v~q~~~~~---~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~ 158 (271)
T PRK13632 82 RKKIGIIFQNPDNQ---FIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLA 158 (271)
T ss_pred hcceEEEEeCHHHh---cCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHH
Confidence 56799999997421 44568888842 2222 2445556554 67999999986 33 7
Q ss_pred CCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccChhhHHH
Q 024032 195 RSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSAPGLRKC 261 (273)
Q Consensus 195 ~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~~l~~~ 261 (273)
.+|++|||||||+|||+. +.++++.++.+.|||++ ..||++++|++|+++..|+++++...+.+...
T Consensus 159 ~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~ 238 (271)
T PRK13632 159 LNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNNKEILEK 238 (271)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcCHHHHHh
Confidence 899999999999999999 34555554435899888 45899999999999999999998877665555
Q ss_pred hCC
Q 024032 262 SKI 264 (273)
Q Consensus 262 ~~~ 264 (273)
++.
T Consensus 239 ~~~ 241 (271)
T PRK13632 239 AKI 241 (271)
T ss_pred cCC
Confidence 554
No 100
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-38 Score=293.45 Aligned_cols=186 Identities=17% Similarity=0.254 Sum_probs=150.9
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc------CccEEEECCeeCC-
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSG- 136 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~------~~G~I~i~g~~i~- 136 (273)
.+.++++|++++|..+..++ |+++||+|++||++||+||||||||||+++|+|+++ ++|+|.++|+++.
T Consensus 78 ~~~i~~~nls~~y~~~~~~~----L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~ 153 (329)
T PRK14257 78 ANVFEIRNFNFWYMNRTKHV----LHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRS 153 (329)
T ss_pred CceEEEEeeEEEecCCCcee----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 45899999999997544566 999999999999999999999999999999999984 4899999999985
Q ss_pred ------CCCccEEEEeccchhhhccCCcccccccccC-------CHHH-----HHHHHHHhc-------------ccCCH
Q 024032 137 ------NSSHTITMYMEEHNVMRSLQSGFCVYDSRGF-------NYNR-----VHEGLEELS-------------SWMSE 185 (273)
Q Consensus 137 ------~~~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~~~~-----~~~~l~~~~-------------~~LSg 185 (273)
.+++.+++++|++.+ +..|+++|..+ ..++ +.++++.++ ..|||
T Consensus 154 ~~~~~~~lr~~i~~v~q~~~~-----~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSg 228 (329)
T PRK14257 154 KKISSLELRTRIGMVFQKPTP-----FEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSG 228 (329)
T ss_pred cccchHhhhccEEEEecCCcc-----CCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCH
Confidence 246789999999874 34689888532 1111 233344332 67999
Q ss_pred HHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeec
Q 024032 186 GVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLD 247 (273)
Q Consensus 186 Gqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g 247 (273)
|||||. |+ +++|+||||||||++||+. +.++.+.+ +.|||++ .+||+|++|++|++++.|
T Consensus 229 GqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~--~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g 306 (329)
T PRK14257 229 GQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK--KYSIIIVTHSMAQAQRISDETVFFYQGWIEEAG 306 (329)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999986 44 7999999999999999999 33455544 6898888 458999999999999999
Q ss_pred ChhhhccChhhHH
Q 024032 248 ATKRLFSAPGLRK 260 (273)
Q Consensus 248 ~~~~l~~~~~l~~ 260 (273)
+++++++.|..+.
T Consensus 307 ~~~~l~~~~~~~~ 319 (329)
T PRK14257 307 ETKTIFIHPKNKR 319 (329)
T ss_pred CHHHHhcCCCcHH
Confidence 9999998776553
No 101
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=4.8e-38 Score=281.63 Aligned_cols=189 Identities=17% Similarity=0.212 Sum_probs=153.2
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCc
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSH 140 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~ 140 (273)
++++|++++|. ++.+ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++.. .++
T Consensus 2 l~~~~l~~~~~--~~~i----l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 75 (256)
T TIGR03873 2 LRLSRVSWSAG--GRLI----VDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARAR 75 (256)
T ss_pred ceEEeEEEEEC--CEEE----EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhh
Confidence 67899999984 4567 999999999999999999999999999999999999 99999999998753 245
Q ss_pred cEEEEeccchhhhccCCcccccccccC---------------CHHHHHHHHHHhc---------ccCCHHHHHHH---Hh
Q 024032 141 TITMYMEEHNVMRSLQSGFCVYDSRGF---------------NYNRVHEGLEELS---------SWMSEGVHHNQ---RC 193 (273)
Q Consensus 141 ~i~~v~q~~~~~~~~~~~~tv~en~~~---------------~~~~~~~~l~~~~---------~~LSgGqkq~~---r~ 193 (273)
.++|++|++.. ++.+|+.+|..+ ..+.+.++++.++ ..|||||+||. |+
T Consensus 76 ~i~~~~q~~~~----~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~a 151 (256)
T TIGR03873 76 RVALVEQDSDT----AVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARA 151 (256)
T ss_pred heEEecccCcc----CCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHH
Confidence 68999998753 445688887321 0123455666654 67999999986 33
Q ss_pred -cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChhh
Q 024032 194 -LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPGL 258 (273)
Q Consensus 194 -l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~l 258 (273)
+.+|+++||||||++||+. +.++++.++ |.|||++ .+||++++|++|++++.|+++++.....+
T Consensus 152 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~ 230 (256)
T TIGR03873 152 LAQEPKLLLLDEPTNHLDVRAQLETLALVRELAAT-GVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLTPALI 230 (256)
T ss_pred HhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhCHHHH
Confidence 7899999999999999999 345566544 8899888 56899999999999999999998776666
Q ss_pred HHHhCCce
Q 024032 259 RKCSKISF 266 (273)
Q Consensus 259 ~~~~~~~~ 266 (273)
...|+.+.
T Consensus 231 ~~~~~~~~ 238 (256)
T TIGR03873 231 RAVYGVDA 238 (256)
T ss_pred HHHhCCCc
Confidence 77777654
No 102
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-38 Score=285.89 Aligned_cols=190 Identities=17% Similarity=0.166 Sum_probs=151.5
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-------
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------- 137 (273)
+++++|++++|.. +.++ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 1 ~l~~~~l~~~~~~-~~~~----l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 75 (275)
T PRK13639 1 ILETRDLKYSYPD-GTEA----LKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLE 75 (275)
T ss_pred CEEEEEEEEEeCC-CCee----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHH
Confidence 3789999999952 3456 999999999999999999999999999999999999 99999999998741
Q ss_pred CCccEEEEeccchhhhccCCcccccccccC-------CH----HHHHHHHHHhc---------ccCCHHHHHHH---Hh-
Q 024032 138 SSHTITMYMEEHNVMRSLQSGFCVYDSRGF-------NY----NRVHEGLEELS---------SWMSEGVHHNQ---RC- 193 (273)
Q Consensus 138 ~~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~~----~~~~~~l~~~~---------~~LSgGqkq~~---r~- 193 (273)
.++.++|++|++... ++..|+.||..+ .. +.+.++++.++ .+|||||+||. |+
T Consensus 76 ~~~~i~~v~q~~~~~---~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral 152 (275)
T PRK13639 76 VRKTVGIVFQNPDDQ---LFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGIL 152 (275)
T ss_pred HHhheEEEeeChhhh---hccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 246799999997421 334588887422 11 23455666654 77999999986 33
Q ss_pred cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChhhH
Q 024032 194 LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPGLR 259 (273)
Q Consensus 194 l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~l~ 259 (273)
+.+|++|||||||+|||+. +.+.++.++ |.|||++ .+||++++|++|++++.|++++++..+...
T Consensus 153 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~-~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~ 231 (275)
T PRK13639 153 AMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKE-GITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSDIETI 231 (275)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcChHHH
Confidence 7999999999999999999 335556554 8999998 468999999999999999999988765544
Q ss_pred HHhCC
Q 024032 260 KCSKI 264 (273)
Q Consensus 260 ~~~~~ 264 (273)
..++.
T Consensus 232 ~~~~~ 236 (275)
T PRK13639 232 RKANL 236 (275)
T ss_pred HhcCC
Confidence 44444
No 103
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.7e-38 Score=291.82 Aligned_cols=186 Identities=14% Similarity=0.151 Sum_probs=149.6
Q ss_pred CceEEEEEEEEeecC--------CeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeC
Q 024032 65 GLNELRHKFLSYRSG--------DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSS 135 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g--------~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i 135 (273)
.+++++|++++|... ...+ |++|||+|++||++||+|+||||||||+++|+|+++ ++|+|.++|+++
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~----l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l 79 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFKPERLVKA----LDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDL 79 (327)
T ss_pred ceEEEeeeEEEEcCCCCccccCCceeE----EeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEc
Confidence 478999999999631 1344 999999999999999999999999999999999999 999999999987
Q ss_pred CC--------CCccEEEEeccchhhhccCCcccccccc--------cCC----HHHHHHHHHHhc----------ccCCH
Q 024032 136 GN--------SSHTITMYMEEHNVMRSLQSGFCVYDSR--------GFN----YNRVHEGLEELS----------SWMSE 185 (273)
Q Consensus 136 ~~--------~~~~i~~v~q~~~~~~~~~~~~tv~en~--------~~~----~~~~~~~l~~~~----------~~LSg 185 (273)
.. .++++++++|++... +...+++.++. ... .+++.++++.++ .+|||
T Consensus 80 ~~~~~~~~~~~r~~i~~v~Q~~~~~--l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSg 157 (327)
T PRK11308 80 LKADPEAQKLLRQKIQIVFQNPYGS--LNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSG 157 (327)
T ss_pred CcCCHHHHHHHhCCEEEEEcCchhh--cCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCH
Confidence 53 346799999997421 13334665542 112 234566666654 68999
Q ss_pred HHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeec
Q 024032 186 GVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLD 247 (273)
Q Consensus 186 Gqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g 247 (273)
||+||. |+ +.+|++||+||||++||+. ++++++.++.|.|||+| .+||+|++|++|+|++.|
T Consensus 158 Gq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g 237 (327)
T PRK11308 158 GQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKG 237 (327)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 999987 33 7899999999999999999 34566666568999998 468999999999999999
Q ss_pred ChhhhccCh
Q 024032 248 ATKRLFSAP 256 (273)
Q Consensus 248 ~~~~l~~~~ 256 (273)
+++++++++
T Consensus 238 ~~~~~~~~p 246 (327)
T PRK11308 238 TKEQIFNNP 246 (327)
T ss_pred CHHHHhcCC
Confidence 999998754
No 104
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=4.6e-38 Score=284.95 Aligned_cols=194 Identities=15% Similarity=0.185 Sum_probs=155.1
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-C--------ccEEEECCeeCC
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R--------SGLVLFAQTSSG 136 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~--------~G~I~i~g~~i~ 136 (273)
+++++|++++|. ++.+ |+++||+|++|++++|+||||||||||+++|+|+++ + +|+|.++|.++.
T Consensus 1 ml~~~nl~~~~~--~~~i----l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~ 74 (272)
T PRK13547 1 MLTADHLHVARR--HRAI----LRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLA 74 (272)
T ss_pred CeEEEEEEEEEC--CEeE----EecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcc
Confidence 378999999983 4567 999999999999999999999999999999999998 7 899999999875
Q ss_pred C-----CCccEEEEeccchhhhccCCcccccccccC---------------CHHHHHHHHHHhc---------ccCCHHH
Q 024032 137 N-----SSHTITMYMEEHNVMRSLQSGFCVYDSRGF---------------NYNRVHEGLEELS---------SWMSEGV 187 (273)
Q Consensus 137 ~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~~~---------------~~~~~~~~l~~~~---------~~LSgGq 187 (273)
. .++.+++++|++.. ++.+|+.||..+ ..+.+.++++.++ .+|||||
T Consensus 75 ~~~~~~~~~~~~~v~q~~~~----~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~ 150 (272)
T PRK13547 75 AIDAPRLARLRAVLPQAAQP----AFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGE 150 (272)
T ss_pred cCCHHHHHhhcEEecccCCC----CCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHH
Confidence 3 24557899998653 344688877321 1123455666655 6899999
Q ss_pred HHHH---Hh-c---------CCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeC
Q 024032 188 HHNQ---RC-L---------RSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKA 240 (273)
Q Consensus 188 kq~~---r~-l---------~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~ 240 (273)
+||. |+ + .+|++|||||||++||+. +.++++.++.|.|||++ ++||++++|++
T Consensus 151 ~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~ 230 (272)
T PRK13547 151 LARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLAD 230 (272)
T ss_pred HHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 9986 34 4 499999999999999999 33455554447899888 46899999999
Q ss_pred CeEeeecChhhhccChhhHHHhCCceEEE
Q 024032 241 GDSKPLDATKRLFSAPGLRKCSKISFCIL 269 (273)
Q Consensus 241 G~i~~~g~~~~l~~~~~l~~~~~~~~~~~ 269 (273)
|++++.|+++++++...+...|+.++.+.
T Consensus 231 G~i~~~g~~~~~~~~~~~~~~~~~~~~~~ 259 (272)
T PRK13547 231 GAIVAHGAPADVLTPAHIARCYGFAVRLV 259 (272)
T ss_pred CeEEEecCHHHHcCHHHHHHHhCCCeEEE
Confidence 99999999999987666788888765543
No 105
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-38 Score=283.55 Aligned_cols=176 Identities=15% Similarity=0.187 Sum_probs=146.2
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEE
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~ 143 (273)
..++++|++++|. ++++ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++...++.++
T Consensus 11 ~~l~i~~l~~~~~--~~~i----l~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~ 84 (257)
T PRK11247 11 TPLLLNAVSKRYG--ERTV----LNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTR 84 (257)
T ss_pred CcEEEEEEEEEEC--Ccce----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceE
Confidence 4699999999994 4556 999999999999999999999999999999999999 99999999988766677899
Q ss_pred EEeccchhhhccCCcccccccccC-----CHHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCCEEEEcCc
Q 024032 144 MYMEEHNVMRSLQSGFCVYDSRGF-----NYNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDDCALMKND 205 (273)
Q Consensus 144 ~v~q~~~~~~~~~~~~tv~en~~~-----~~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~iLlLDEP 205 (273)
|++|++.++ ...|++||..+ ..+++.++++.++ .+||||||||. |+ +.+|++||||||
T Consensus 85 ~v~q~~~l~----~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEP 160 (257)
T PRK11247 85 LMFQDARLL----PWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEP 160 (257)
T ss_pred EEecCccCC----CCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 999997653 34589988532 1345566677665 67999999986 33 789999999999
Q ss_pred CCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChh
Q 024032 206 AEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATK 250 (273)
Q Consensus 206 ts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~ 250 (273)
|++||+. +.++++.++.+.|||++ .+||++++|++|+++..++.+
T Consensus 161 t~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 161 LGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 9999999 33455544448899888 468999999999999887654
No 106
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.6e-38 Score=284.39 Aligned_cols=178 Identities=17% Similarity=0.216 Sum_probs=145.7
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CC
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SS 139 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~ 139 (273)
.++++|++++|+. +..+ |+++||+|++||++||+||||||||||+++|+|+++ ++|+|.++|+++.. .+
T Consensus 4 ~l~~~~l~~~~~~-~~~~----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 78 (274)
T PRK13647 4 IIEVEDLHFRYKD-GTKA----LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVR 78 (274)
T ss_pred eEEEEEEEEEeCC-CCee----eeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHH
Confidence 6899999999953 3456 999999999999999999999999999999999999 99999999998753 34
Q ss_pred ccEEEEeccchhhhccCCcccccccccC-------CH----HHHHHHHHHhc---------ccCCHHHHHHH---Hh-cC
Q 024032 140 HTITMYMEEHNVMRSLQSGFCVYDSRGF-------NY----NRVHEGLEELS---------SWMSEGVHHNQ---RC-LR 195 (273)
Q Consensus 140 ~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~~----~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~ 195 (273)
+.++|++|++.. .++..||.+|..+ .. +++.++++.++ ..|||||+||. |+ +.
T Consensus 79 ~~i~~v~q~~~~---~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~ 155 (274)
T PRK13647 79 SKVGLVFQDPDD---QVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAM 155 (274)
T ss_pred hhEEEEecChhh---hhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 679999998742 1345688888432 21 23455666655 78999999986 33 79
Q ss_pred CCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhh
Q 024032 196 SDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRL 252 (273)
Q Consensus 196 ~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l 252 (273)
+|++|||||||++||+. +.+++++++ |.|||++ ++||++++|++|++++.|+++++
T Consensus 156 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 156 DPDVIVLDEPMAYLDPRGQETLMEILDRLHNQ-GKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 99999999999999999 345566555 8999998 56899999999999999998754
No 107
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=4e-38 Score=273.46 Aligned_cols=170 Identities=13% Similarity=0.176 Sum_probs=139.5
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC---CCccE
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---SSHTI 142 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---~~~~i 142 (273)
++++|++++|. ++++ |+++||++++|++++|+||||||||||+++|+|+++ ++|+|.++|+++.. .++.+
T Consensus 1 l~~~~l~~~~~--~~~~----l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i 74 (208)
T cd03268 1 LKTNDLTKTYG--KKRV----LDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRI 74 (208)
T ss_pred CEEEEEEEEEC--CeEe----EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhE
Confidence 47899999984 4567 999999999999999999999999999999999999 99999999988743 35679
Q ss_pred EEEeccchhhhccCCccccccccc-------CCHHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCCEEEE
Q 024032 143 TMYMEEHNVMRSLQSGFCVYDSRG-------FNYNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDDCALM 202 (273)
Q Consensus 143 ~~v~q~~~~~~~~~~~~tv~en~~-------~~~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~iLlL 202 (273)
++++|++.+ ++..|+.||.. ...+++.++++.++ .+||||||||. ++ +.+|++|||
T Consensus 75 ~~~~q~~~~----~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llll 150 (208)
T cd03268 75 GALIEAPGF----YPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLIL 150 (208)
T ss_pred EEecCCCcc----CccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999998764 44568888832 23445666666665 67999999986 33 789999999
Q ss_pred cCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeec
Q 024032 203 KNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLD 247 (273)
Q Consensus 203 DEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g 247 (273)
||||++||+. +.++++.++ |.|+|++ ..||++++|++|++++.|
T Consensus 151 DEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 151 DEPTNGLDPDGIKELRELILSLRDQ-GITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999 334555543 8899888 468999999999998654
No 108
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.4e-38 Score=284.70 Aligned_cols=193 Identities=16% Similarity=0.208 Sum_probs=153.9
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-Cc---cEEEECCeeCCC---
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RS---GLVLFAQTSSGN--- 137 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~---G~I~i~g~~i~~--- 137 (273)
..++++|++++|....+++ |+++||+|++||++||+||||||||||+++|+|+++ ++ |+|.++|+++..
T Consensus 4 ~~l~i~~l~~~~~~~~~~~----l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~ 79 (282)
T PRK13640 4 NIVEFKHVSFTYPDSKKPA----LNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTV 79 (282)
T ss_pred ceEEEEEEEEEcCCCCccc----eeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCH
Confidence 4689999999995433446 999999999999999999999999999999999998 66 999999998753
Q ss_pred --CCccEEEEeccchhhhccCCcccccccccC-------CH----HHHHHHHHHhc---------ccCCHHHHHHH---H
Q 024032 138 --SSHTITMYMEEHNVMRSLQSGFCVYDSRGF-------NY----NRVHEGLEELS---------SWMSEGVHHNQ---R 192 (273)
Q Consensus 138 --~~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~~----~~~~~~l~~~~---------~~LSgGqkq~~---r 192 (273)
.++++++++|++..+ ++..|++||..+ .. +.+.++++.++ ..|||||+||. +
T Consensus 80 ~~~~~~ig~v~q~~~~~---~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~lar 156 (282)
T PRK13640 80 WDIREKVGIVFQNPDNQ---FVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAG 156 (282)
T ss_pred HHHHhheEEEEECHHHh---hccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHH
Confidence 346799999997521 445688888432 22 23455666655 67999999986 3
Q ss_pred h-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccChhh
Q 024032 193 C-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSAPGL 258 (273)
Q Consensus 193 ~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~~l 258 (273)
+ +.+|++|||||||+|||+. +.++++.++.|.|||++ ..||++++|++|++++.|++++++..+..
T Consensus 157 al~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~ 236 (282)
T PRK13640 157 ILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFSKVEM 236 (282)
T ss_pred HHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhcCHHH
Confidence 3 7999999999999999999 34555655448899998 45899999999999999999998876654
Q ss_pred HHHhCC
Q 024032 259 RKCSKI 264 (273)
Q Consensus 259 ~~~~~~ 264 (273)
...++.
T Consensus 237 ~~~~~~ 242 (282)
T PRK13640 237 LKEIGL 242 (282)
T ss_pred HHHcCC
Confidence 444444
No 109
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=4.9e-38 Score=273.63 Aligned_cols=171 Identities=20% Similarity=0.293 Sum_probs=138.2
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC---CCccE
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---SSHTI 142 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---~~~~i 142 (273)
++++|++++|. ++++ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++.. .++.+
T Consensus 1 i~~~~l~~~~~--~~~~----l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i 74 (213)
T cd03301 1 VELENVTKRFG--NVTA----LDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDI 74 (213)
T ss_pred CEEEeeEEEEC--Ceee----eeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceE
Confidence 47899999984 3566 999999999999999999999999999999999998 99999999998753 23569
Q ss_pred EEEeccchhhhccCCcccccccccC-------CH----HHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCC
Q 024032 143 TMYMEEHNVMRSLQSGFCVYDSRGF-------NY----NRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDD 198 (273)
Q Consensus 143 ~~v~q~~~~~~~~~~~~tv~en~~~-------~~----~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~ 198 (273)
++++|++.+ +...|+++|..+ .. +++.++++.++ .+||||||||. |+ +.+|+
T Consensus 75 ~~~~q~~~~----~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~ 150 (213)
T cd03301 75 AMVFQNYAL----YPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPK 150 (213)
T ss_pred EEEecChhh----ccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 999998765 334588887321 12 23445556554 67999999986 33 78999
Q ss_pred EEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeec
Q 024032 199 CALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLD 247 (273)
Q Consensus 199 iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g 247 (273)
++||||||+|||+. +.++++.++.|.|||++ .+||++++|++|++++.|
T Consensus 151 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 151 VFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999 34555655448899998 468999999999998765
No 110
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=2e-38 Score=339.89 Aligned_cols=216 Identities=16% Similarity=0.174 Sum_probs=175.4
Q ss_pred hhhhhhccchhhhhhhhHHHHHHHhchhhh-------c-----cCCCCceEEEEEEEEeecC-CeeeeccceeeeeeEEc
Q 024032 30 DECVKLKLDLPNVSTLTPRLRVLREMERLA-------L-----IAPDGLNELRHKFLSYRSG-DFWIPIGGIQKGGMDIP 96 (273)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-------~-----~~~~~~i~~~~v~~~y~~g-~~~v~~~~L~~is~~i~ 96 (273)
..+.....+++.+.++.+|+.++++.++.. . ....+.|+++||+|+|+.+ +.++ |+++||+|+
T Consensus 1117 ~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~v----L~~lsl~i~ 1192 (1466)
T PTZ00265 1117 GKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPI----YKDLTFSCD 1192 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCcc----ccCeeEEEc
Confidence 445556677889999999999998754310 0 0112469999999999753 3456 999999999
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhhCcc-C---------------------------------------------------
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYSVLS-R--------------------------------------------------- 124 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~gl~~-~--------------------------------------------------- 124 (273)
+|+++|||||||||||||+++|.|+|+ +
T Consensus 1193 ~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1272 (1466)
T PTZ00265 1193 SKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTV 1272 (1466)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999998 4
Q ss_pred ---ccEEEECCeeCCC-----CCccEEEEeccchhhhccCCcccccccc-----cCCHHHHHHHHHHhc-----------
Q 024032 125 ---SGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSR-----GFNYNRVHEGLEELS----------- 180 (273)
Q Consensus 125 ---~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~-----~~~~~~~~~~l~~~~----------- 180 (273)
+|+|+++|.++.+ +|+.+++|+|++.+ |..||+||. ..+.++++++++.++
T Consensus 1273 ~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~L-----F~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~G 1347 (1466)
T PTZ00265 1273 FKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPML-----FNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNK 1347 (1466)
T ss_pred CCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcc-----ccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccc
Confidence 8999999999864 67899999999984 566999993 346778888887765
Q ss_pred ---------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH--H----HHHHHHhcCCcEEEEc-------eeCCE
Q 024032 181 ---------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK--S----SPKYVLRRVDFAMVVS-------NIAEI 234 (273)
Q Consensus 181 ---------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~--~----~l~~l~~~~g~tiiiv-------~~ad~ 234 (273)
..||||||||. |+ +++|+|||||||||+||+. . .+..+....++|+|+| +.||+
T Consensus 1348 ydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~ 1427 (1466)
T PTZ00265 1348 YDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDK 1427 (1466)
T ss_pred cCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCE
Confidence 56999999986 55 8999999999999999999 2 2333321137898888 56899
Q ss_pred EEEEeC----CeEe-eecChhhhcc
Q 024032 235 YKALKA----GDSK-PLDATKRLFS 254 (273)
Q Consensus 235 i~vl~~----G~i~-~~g~~~~l~~ 254 (273)
|+||++ |+++ +.|+|+++++
T Consensus 1428 Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1428 IVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred EEEEeCCCCCCCEEEEecCHHHHHh
Confidence 999999 9955 8999999986
No 111
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.3e-38 Score=285.32 Aligned_cols=187 Identities=15% Similarity=0.246 Sum_probs=149.4
Q ss_pred CceEEEEEEEEeecC----CeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC--
Q 024032 65 GLNELRHKFLSYRSG----DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-- 137 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g----~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-- 137 (273)
.+++++|++++|+.+ ++++ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++..
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~v----l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~ 78 (280)
T PRK13633 3 EMIKCKNVSYKYESNEESTEKLA----LDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEE 78 (280)
T ss_pred ceEEEeeeEEEcCCCCCCCCcce----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccc
Confidence 468999999999642 2346 999999999999999999999999999999999999 99999999998753
Q ss_pred ----CCccEEEEeccchhhhccCCcccccccccC-------C----HHHHHHHHHHhc---------ccCCHHHHHHH--
Q 024032 138 ----SSHTITMYMEEHNVMRSLQSGFCVYDSRGF-------N----YNRVHEGLEELS---------SWMSEGVHHNQ-- 191 (273)
Q Consensus 138 ----~~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~----~~~~~~~l~~~~---------~~LSgGqkq~~-- 191 (273)
.++.+++++|++... ++..|+.+|..+ . .+.+.++++.++ .+|||||+||.
T Consensus 79 ~~~~~~~~i~~v~q~~~~~---~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~l 155 (280)
T PRK13633 79 NLWDIRNKAGMVFQNPDNQ---IVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAI 155 (280)
T ss_pred cHHHHhhheEEEecChhhh---hccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHH
Confidence 356799999987431 233467666321 2 233555666655 78999999986
Q ss_pred -Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 192 -RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 192 -r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
|+ +.+|++|||||||+|||+. +.++++.++.|.|||++ ..||++++|++|+++..|++++++...
T Consensus 156 aral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 235 (280)
T PRK13633 156 AGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIFKEV 235 (280)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHhcCh
Confidence 33 7999999999999999999 33555654448999998 348999999999999999999987654
Q ss_pred hh
Q 024032 257 GL 258 (273)
Q Consensus 257 ~l 258 (273)
..
T Consensus 236 ~~ 237 (280)
T PRK13633 236 EM 237 (280)
T ss_pred HH
Confidence 33
No 112
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=2.8e-38 Score=276.15 Aligned_cols=169 Identities=21% Similarity=0.238 Sum_probs=135.9
Q ss_pred eEEEEEEEEeecCC--eeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC------
Q 024032 67 NELRHKFLSYRSGD--FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------ 137 (273)
Q Consensus 67 i~~~~v~~~y~~g~--~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------ 137 (273)
++++|++++|+.+. +++ |+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~~~~~~~i----l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~ 76 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQA----LKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKEL 76 (218)
T ss_pred CeEeeeEEEecCCCcceeE----EeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHH
Confidence 47899999995422 456 999999999999999999999999999999999999 99999999998753
Q ss_pred ---CCccEEEEeccchhhhccCCcccccccccC-------C----HHHHHHHHHHhc---------ccCCHHHHHHH---
Q 024032 138 ---SSHTITMYMEEHNVMRSLQSGFCVYDSRGF-------N----YNRVHEGLEELS---------SWMSEGVHHNQ--- 191 (273)
Q Consensus 138 ---~~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~----~~~~~~~l~~~~---------~~LSgGqkq~~--- 191 (273)
.++.+++++|++.+ +..+|+.||..+ . .+.+.++++.++ .+||||||||.
T Consensus 77 ~~~~~~~i~~~~q~~~~----~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la 152 (218)
T cd03255 77 AAFRRRHIGFVFQSFNL----LPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIA 152 (218)
T ss_pred HHHHhhcEEEEeecccc----CCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHH
Confidence 13569999998775 344588887321 1 234556666665 67999999987
Q ss_pred Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeE
Q 024032 192 RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKAGDS 243 (273)
Q Consensus 192 r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i 243 (273)
|+ +.+|++|||||||++||+. +.++++.++.|.|||++ ..||++++|++|++
T Consensus 153 ~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 153 RALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 33 7899999999999999999 33555655348899998 45899999999974
No 113
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.5e-38 Score=285.02 Aligned_cols=184 Identities=18% Similarity=0.214 Sum_probs=148.6
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC------C
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------S 138 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------~ 138 (273)
+++++|++++|.. ++.+ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|+++|.++.. .
T Consensus 1 ml~~~~l~~~~~~-~~~~----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 75 (274)
T PRK13644 1 MIRLENVSYSYPD-GTPA----LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGI 75 (274)
T ss_pred CEEEEEEEEEcCC-CCce----eeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHH
Confidence 3789999999952 3446 999999999999999999999999999999999999 99999999998753 2
Q ss_pred CccEEEEeccchhhhccCCcccccccccC-------C----HHHHHHHHHHhc---------ccCCHHHHHHH---Hh-c
Q 024032 139 SHTITMYMEEHNVMRSLQSGFCVYDSRGF-------N----YNRVHEGLEELS---------SWMSEGVHHNQ---RC-L 194 (273)
Q Consensus 139 ~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~----~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l 194 (273)
++.+++++|++... ++..|+++|..+ + .+.+.++++.++ ..|||||+||. |+ +
T Consensus 76 ~~~i~~v~q~~~~~---~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~ 152 (274)
T PRK13644 76 RKLVGIVFQNPETQ---FVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILT 152 (274)
T ss_pred HhheEEEEEChhhh---cccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHH
Confidence 45799999987531 345688887422 1 223445556555 77999999986 33 7
Q ss_pred CCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccChhh
Q 024032 195 RSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSAPGL 258 (273)
Q Consensus 195 ~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~~l 258 (273)
.+|++|||||||+|||+. +.++++.++ |.|||++ ..||++++|++|+++..|++++++..+.+
T Consensus 153 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~-g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~ 228 (274)
T PRK13644 153 MEPECLIFDEVTSMLDPDSGIAVLERIKKLHEK-GKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSDVSL 228 (274)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcChHH
Confidence 899999999999999999 335555544 8999999 45899999999999999999998776553
No 114
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=6.6e-38 Score=279.99 Aligned_cols=181 Identities=15% Similarity=0.189 Sum_probs=146.9
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC--------
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-------- 137 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-------- 137 (273)
++++|++++|+ ++.+ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 1 i~~~~l~~~~~--~~~~----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~ 74 (252)
T TIGR03005 1 VRFSDVTKRFG--ILTV----LDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPL 74 (252)
T ss_pred CEEEEEEEEeC--CeeE----EeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccc
Confidence 47899999994 3566 999999999999999999999999999999999999 99999999988742
Q ss_pred ----------CCccEEEEeccchhhhccCCcccccccccC--------C----HHHHHHHHHHhc---------ccCCHH
Q 024032 138 ----------SSHTITMYMEEHNVMRSLQSGFCVYDSRGF--------N----YNRVHEGLEELS---------SWMSEG 186 (273)
Q Consensus 138 ----------~~~~i~~v~q~~~~~~~~~~~~tv~en~~~--------~----~~~~~~~l~~~~---------~~LSgG 186 (273)
.++.+++++|++.+ ++..|+.+|..+ . .+.+.+.++.++ ..||||
T Consensus 75 ~~~~~~~~~~~~~~i~~v~q~~~~----~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G 150 (252)
T TIGR03005 75 VPADEKHLRQMRNKIGMVFQSFNL----FPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGG 150 (252)
T ss_pred cccchhHHHHHhhCeEEEecCccc----CCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHH
Confidence 24679999998765 344588887421 1 123455666555 679999
Q ss_pred HHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecC
Q 024032 187 VHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDA 248 (273)
Q Consensus 187 qkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~ 248 (273)
|+||. |+ +.+|++|||||||++||+. +.++++.++.|.|+|++ .+||++++|++|++++.|+
T Consensus 151 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~ 230 (252)
T TIGR03005 151 QQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGK 230 (252)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 99986 33 7899999999999999999 33555554448899988 4689999999999999999
Q ss_pred hhhhccChh
Q 024032 249 TKRLFSAPG 257 (273)
Q Consensus 249 ~~~l~~~~~ 257 (273)
+++++..+.
T Consensus 231 ~~~~~~~~~ 239 (252)
T TIGR03005 231 PDEIFRQPK 239 (252)
T ss_pred HHHHhcCCC
Confidence 999876543
No 115
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.5e-38 Score=282.96 Aligned_cols=195 Identities=15% Similarity=0.229 Sum_probs=151.9
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN----- 137 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~----- 137 (273)
...++++|++++|....+.+ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 5 ~~~l~i~~l~~~~~~~~~~~----l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~ 80 (269)
T PRK13648 5 NSIIVFKNVSFQYQSDASFT----LKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEK 80 (269)
T ss_pred CceEEEEEEEEEcCCCCCcc----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHH
Confidence 34689999999996432345 999999999999999999999999999999999999 99999999998753
Q ss_pred CCccEEEEeccchhhhccCCccccccccc-------CCH----HHHHHHHHHhc---------ccCCHHHHHHH---Hh-
Q 024032 138 SSHTITMYMEEHNVMRSLQSGFCVYDSRG-------FNY----NRVHEGLEELS---------SWMSEGVHHNQ---RC- 193 (273)
Q Consensus 138 ~~~~i~~v~q~~~~~~~~~~~~tv~en~~-------~~~----~~~~~~l~~~~---------~~LSgGqkq~~---r~- 193 (273)
.++.+++++|++..+ ++..|+.+|.. ... +++.++++.++ ..||+||+||. |+
T Consensus 81 ~~~~i~~v~q~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral 157 (269)
T PRK13648 81 LRKHIGIVFQNPDNQ---FVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVL 157 (269)
T ss_pred HHhheeEEEeChHHh---cccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHH
Confidence 346799999997421 33346666521 111 23455666655 67999999986 33
Q ss_pred cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccChhhHH
Q 024032 194 LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSAPGLRK 260 (273)
Q Consensus 194 l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~~l~~ 260 (273)
+.+|++|||||||++||+. +.++++.++.|.|||++ ..||++++|++|++++.|+++++...+....
T Consensus 158 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~ 237 (269)
T PRK13648 158 ALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHAEELT 237 (269)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcCHHHHH
Confidence 7999999999999999999 33555554447899888 3489999999999999999999877654444
Q ss_pred HhCCc
Q 024032 261 CSKIS 265 (273)
Q Consensus 261 ~~~~~ 265 (273)
.++.+
T Consensus 238 ~~~~~ 242 (269)
T PRK13648 238 RIGLD 242 (269)
T ss_pred hcCCC
Confidence 44443
No 116
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=5.4e-38 Score=281.45 Aligned_cols=183 Identities=17% Similarity=0.205 Sum_probs=149.3
Q ss_pred CCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC----
Q 024032 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---- 137 (273)
Q Consensus 63 ~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---- 137 (273)
.++.++++|+++.|. ++++ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++..
T Consensus 2 ~~~~l~~~~l~~~~~--~~~~----l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~ 75 (257)
T PRK10619 2 SENKLNVIDLHKRYG--EHEV----LKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDK 75 (257)
T ss_pred CCccEEEeeeEEEEC--CEEE----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccc
Confidence 356799999999994 4567 999999999999999999999999999999999999 99999999987631
Q ss_pred --------------CCccEEEEeccchhhhccCCcccccccccC--------C----HHHHHHHHHHhc----------c
Q 024032 138 --------------SSHTITMYMEEHNVMRSLQSGFCVYDSRGF--------N----YNRVHEGLEELS----------S 181 (273)
Q Consensus 138 --------------~~~~i~~v~q~~~~~~~~~~~~tv~en~~~--------~----~~~~~~~l~~~~----------~ 181 (273)
.++.++|++|++.++ ..+|++||..+ . .+++.++++.++ .
T Consensus 76 ~~~~~~~~~~~~~~~~~~i~~v~q~~~l~----~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 151 (257)
T PRK10619 76 DGQLKVADKNQLRLLRTRLTMVFQHFNLW----SHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPV 151 (257)
T ss_pred ccccccccchHHHHHhhceEEEecCcccC----CCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcc
Confidence 245799999998753 34588888421 1 123455666654 5
Q ss_pred cCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeE
Q 024032 182 WMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDS 243 (273)
Q Consensus 182 ~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i 243 (273)
+|||||+||. |+ +++|++|||||||++||+. +.++++.++ |.|||++ .+||++++|++|++
T Consensus 152 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~-g~tiiivsH~~~~~~~~~d~i~~l~~G~i 230 (257)
T PRK10619 152 HLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSSHVIFLHQGKI 230 (257)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 7999999986 33 7899999999999999999 345556554 8999988 46899999999999
Q ss_pred eeecChhhhccCh
Q 024032 244 KPLDATKRLFSAP 256 (273)
Q Consensus 244 ~~~g~~~~l~~~~ 256 (273)
++.|++++++..+
T Consensus 231 ~~~~~~~~~~~~~ 243 (257)
T PRK10619 231 EEEGAPEQLFGNP 243 (257)
T ss_pred EEeCCHHHhhhCc
Confidence 9999999987543
No 117
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=5.8e-38 Score=279.66 Aligned_cols=180 Identities=16% Similarity=0.230 Sum_probs=146.6
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-------
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------- 137 (273)
+++++|++++|+ ++++ |+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 3 ~l~~~~l~~~~~--~~~~----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 76 (250)
T PRK11264 3 AIEVKNLVKKFH--GQTV----LHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQ 76 (250)
T ss_pred cEEEeceEEEEC--Ceee----eccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccch
Confidence 589999999994 4566 999999999999999999999999999999999999 99999999987642
Q ss_pred ------CCccEEEEeccchhhhccCCcccccccccC--------CH----HHHHHHHHHhc---------ccCCHHHHHH
Q 024032 138 ------SSHTITMYMEEHNVMRSLQSGFCVYDSRGF--------NY----NRVHEGLEELS---------SWMSEGVHHN 190 (273)
Q Consensus 138 ------~~~~i~~v~q~~~~~~~~~~~~tv~en~~~--------~~----~~~~~~l~~~~---------~~LSgGqkq~ 190 (273)
.++.+++++|++.+ ++..|+.||..+ .. +.+.+.++.++ .+|||||+||
T Consensus 77 ~~~~~~~~~~i~~v~q~~~~----~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qr 152 (250)
T PRK11264 77 KGLIRQLRQHVGFVFQNFNL----FPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQR 152 (250)
T ss_pred hhHHHHhhhhEEEEecCccc----CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHH
Confidence 24578999998765 344588887421 11 23445566554 6799999998
Q ss_pred H---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhh
Q 024032 191 Q---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRL 252 (273)
Q Consensus 191 ~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l 252 (273)
. |+ +.+|++|||||||++||+. +.++++.++ |.|||++ .+||++++|++|++++.|+++++
T Consensus 153 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 231 (250)
T PRK11264 153 VAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQE-KRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKAL 231 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 6 33 7899999999999999999 334555544 8899888 46899999999999999999998
Q ss_pred ccCh
Q 024032 253 FSAP 256 (273)
Q Consensus 253 ~~~~ 256 (273)
+..+
T Consensus 232 ~~~~ 235 (250)
T PRK11264 232 FADP 235 (250)
T ss_pred hcCC
Confidence 7654
No 118
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=2.8e-38 Score=296.65 Aligned_cols=170 Identities=18% Similarity=0.268 Sum_probs=142.4
Q ss_pred CCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----C----CccEEEEecc
Q 024032 79 GDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----S----SHTITMYMEE 148 (273)
Q Consensus 79 g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~----~~~i~~v~q~ 148 (273)
+++.+ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|+++|+++.. + ++.++|++|+
T Consensus 4 ~~~~~----l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~ 79 (363)
T TIGR01186 4 GGKKG----VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQ 79 (363)
T ss_pred CCcee----EEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECC
Confidence 45556 999999999999999999999999999999999999 99999999999864 2 5689999999
Q ss_pred chhhhccCCcccccccccC-------C----HHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCCEEEEcC
Q 024032 149 HNVMRSLQSGFCVYDSRGF-------N----YNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDDCALMKN 204 (273)
Q Consensus 149 ~~~~~~~~~~~tv~en~~~-------~----~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~iLlLDE 204 (273)
+.+| +.+||++|..+ + .+++.++++.++ .+||||||||. |+ +.+|++|||||
T Consensus 80 ~~l~----~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDE 155 (363)
T TIGR01186 80 FALF----PHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDE 155 (363)
T ss_pred CcCC----CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 8864 44599998422 2 234556666665 78999999987 44 79999999999
Q ss_pred cCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 205 DAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 205 Pts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
||++|||. +.+.++.++.|+|||++ ++||+|++|++|++++.|++++++..+
T Consensus 156 P~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p 221 (363)
T TIGR01186 156 AFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNP 221 (363)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCc
Confidence 99999999 33455655558999999 568999999999999999999998654
No 119
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-37 Score=277.38 Aligned_cols=180 Identities=17% Similarity=0.182 Sum_probs=146.9
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CC
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SS 139 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~ 139 (273)
.++++|++++|. ++.+ |+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|.++.. .+
T Consensus 3 ~l~~~~l~~~~~--~~~~----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 76 (241)
T PRK14250 3 EIEFKEVSYSSF--GKEI----LKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLR 76 (241)
T ss_pred eEEEEeEEEEeC--Ceee----eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhh
Confidence 478999999984 4566 999999999999999999999999999999999998 99999999998742 35
Q ss_pred ccEEEEeccchhhhccCCcccccccccC-------CHHHHHHHHHHhc----------ccCCHHHHHHH---Hh-cCCCC
Q 024032 140 HTITMYMEEHNVMRSLQSGFCVYDSRGF-------NYNRVHEGLEELS----------SWMSEGVHHNQ---RC-LRSDD 198 (273)
Q Consensus 140 ~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~~~~~~~~l~~~~----------~~LSgGqkq~~---r~-l~~p~ 198 (273)
+.+++++|++.++ ..|+.+|..+ ...++.+.++.++ ..|||||+||. |+ +.+|+
T Consensus 77 ~~i~~~~q~~~~~-----~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 151 (241)
T PRK14250 77 RKIGMVFQQPHLF-----EGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPE 151 (241)
T ss_pred hcEEEEecCchhc-----hhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 6799999997643 3488887432 1234555565554 57999999986 33 78999
Q ss_pred EEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 199 CALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 199 iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
+|||||||++||+. +.++.+.++.|.|||++ .+||++++|++|+++..|++++++..+
T Consensus 152 llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 223 (241)
T PRK14250 152 VLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNP 223 (241)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcCC
Confidence 99999999999999 33555554348899988 468999999999999999999988654
No 120
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.3e-38 Score=276.29 Aligned_cols=175 Identities=18% Similarity=0.205 Sum_probs=140.6
Q ss_pred ceEEEEEEEEeecCC--eeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCC----
Q 024032 66 LNELRHKFLSYRSGD--FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNS---- 138 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~--~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~---- 138 (273)
+++++|++++|+.+. .++ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|+++|+++...
T Consensus 5 ~l~~~~l~~~~~~~~~~~~i----l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~ 80 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDV----LHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAA 80 (233)
T ss_pred eEEEEeEEEEcCCCCcceee----EEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHH
Confidence 689999999996432 456 999999999999999999999999999999999999 999999999987531
Q ss_pred -----CccEEEEeccchhhhccCCcccccccccC-------C----HHHHHHHHHHhc---------ccCCHHHHHHH--
Q 024032 139 -----SHTITMYMEEHNVMRSLQSGFCVYDSRGF-------N----YNRVHEGLEELS---------SWMSEGVHHNQ-- 191 (273)
Q Consensus 139 -----~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~----~~~~~~~l~~~~---------~~LSgGqkq~~-- 191 (273)
++.++|++|++.+ +..+|+++|..+ . .+++.++++.++ .+||||||||.
T Consensus 81 ~~~~~~~~i~~v~q~~~~----~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~l 156 (233)
T PRK11629 81 KAELRNQKLGFIYQFHHL----LPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAI 156 (233)
T ss_pred HHHHHhccEEEEecCccc----CCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHH
Confidence 2569999999765 344588887321 2 123556666665 67999999986
Q ss_pred -Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeEeeecC
Q 024032 192 -RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKAGDSKPLDA 248 (273)
Q Consensus 192 -r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~ 248 (273)
|+ +.+|++|||||||++||+. +.++++.++.|.|||++ ..+|++++|++|++++.++
T Consensus 157 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 157 ARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 33 7899999999999999999 33555554348999999 2357999999999998765
No 121
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=6.2e-38 Score=287.74 Aligned_cols=177 Identities=15% Similarity=0.151 Sum_probs=147.2
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC----CCc
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN----SSH 140 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~----~~~ 140 (273)
.++++|++++|. +..+ |+++||+|++||++||+||||||||||+++|+|+++ ++|+|.++|.++.. .++
T Consensus 2 ~l~~~~l~~~~~--~~~~----l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~ 75 (301)
T TIGR03522 2 SIRVSSLTKLYG--TQNA----LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQR 75 (301)
T ss_pred EEEEEEEEEEEC--CEEE----EEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHh
Confidence 378999999994 4566 999999999999999999999999999999999999 99999999998753 356
Q ss_pred cEEEEeccchhhhccCCccccccccc-------CC----HHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCC
Q 024032 141 TITMYMEEHNVMRSLQSGFCVYDSRG-------FN----YNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRS 196 (273)
Q Consensus 141 ~i~~v~q~~~~~~~~~~~~tv~en~~-------~~----~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~ 196 (273)
.++|++|++.+ +..+|+.||.. .+ .+++.++++.++ ..||||||||. ++ +++
T Consensus 76 ~ig~~~q~~~l----~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~ 151 (301)
T TIGR03522 76 NIGYLPEHNPL----YLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHD 151 (301)
T ss_pred ceEEecCCCCC----CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcC
Confidence 79999999875 44558988832 22 234556666665 67999999986 33 899
Q ss_pred CCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhcc
Q 024032 197 DDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFS 254 (273)
Q Consensus 197 p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~ 254 (273)
|++|||||||+|||+. +.++++. + +.|||++ .+||++++|++|+++..|+++++..
T Consensus 152 p~lliLDEPt~gLD~~~~~~l~~~l~~~~-~-~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 152 PKVLILDEPTTGLDPNQLVEIRNVIKNIG-K-DKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 9999999999999999 3345554 3 7899888 5699999999999999999998853
No 122
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.6e-38 Score=291.74 Aligned_cols=185 Identities=15% Similarity=0.170 Sum_probs=146.8
Q ss_pred ceEEEEEEEEeecCC--eeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-----CccEEEECCeeCCCC
Q 024032 66 LNELRHKFLSYRSGD--FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-----RSGLVLFAQTSSGNS 138 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~--~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-----~~G~I~i~g~~i~~~ 138 (273)
+++++|++++|...+ ..+ |+||||+|++||++||+||||||||||+++|+|+++ ++|+|.++|+++...
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~----l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~ 78 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRA----VDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRI 78 (326)
T ss_pred eEEEeCeEEEECCCCccEEE----EeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcC
Confidence 589999999996533 345 999999999999999999999999999999999985 589999999987531
Q ss_pred ---------CccEEEEeccchhhhccCCccccccc----c----cCC----HHHHHHHHHHhc------------ccCCH
Q 024032 139 ---------SHTITMYMEEHNVMRSLQSGFCVYDS----R----GFN----YNRVHEGLEELS------------SWMSE 185 (273)
Q Consensus 139 ---------~~~i~~v~q~~~~~~~~~~~~tv~en----~----~~~----~~~~~~~l~~~~------------~~LSg 185 (273)
++.+++++|++... +...+++.++ . +.. .+.+.++++.++ .+|||
T Consensus 79 ~~~~~~~~r~~~i~~v~Q~~~~~--l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSg 156 (326)
T PRK11022 79 SEKERRNLVGAEVAMIFQDPMTS--LNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSG 156 (326)
T ss_pred CHHHHHHHhCCCEEEEecCchhh--cCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCH
Confidence 24699999997421 1223344432 1 112 234556666655 57999
Q ss_pred HHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeec
Q 024032 186 GVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLD 247 (273)
Q Consensus 186 Gqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g 247 (273)
||+||. |+ +.+|++||+||||++||+. +.++++.++.|.|+|+| .+||+|++|++|+|++.|
T Consensus 157 Gq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~g 236 (326)
T PRK11022 157 GMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETG 236 (326)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 999987 33 7899999999999999999 44666766568999998 568999999999999999
Q ss_pred ChhhhccCh
Q 024032 248 ATKRLFSAP 256 (273)
Q Consensus 248 ~~~~l~~~~ 256 (273)
+++++++++
T Consensus 237 ~~~~~~~~p 245 (326)
T PRK11022 237 KAHDIFRAP 245 (326)
T ss_pred CHHHHhhCC
Confidence 999998654
No 123
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.1e-37 Score=274.55 Aligned_cols=185 Identities=15% Similarity=0.199 Sum_probs=145.7
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC------CC
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------SS 139 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------~~ 139 (273)
++++|+++.|+ ++++ |+++||++++||+++|+||||||||||+++|+|+++ ++|+|.++|.++.. .+
T Consensus 1 l~~~~l~~~~~--~~~~----l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (230)
T TIGR03410 1 LEVSNLNVYYG--QSHI----LRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERAR 74 (230)
T ss_pred CEEEeEEEEeC--CeEE----ecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHH
Confidence 47899999984 4566 999999999999999999999999999999999999 99999999998753 24
Q ss_pred ccEEEEeccchhhhccCCcccccccccC-------C-HHHHHHHHHHhc----------ccCCHHHHHHH---Hh-cCCC
Q 024032 140 HTITMYMEEHNVMRSLQSGFCVYDSRGF-------N-YNRVHEGLEELS----------SWMSEGVHHNQ---RC-LRSD 197 (273)
Q Consensus 140 ~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~-~~~~~~~l~~~~----------~~LSgGqkq~~---r~-l~~p 197 (273)
+.++|++|++.++ ..+|+.+|..+ . .+...+.++.++ ..|||||+||. |+ +.+|
T Consensus 75 ~~i~~~~q~~~~~----~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 150 (230)
T TIGR03410 75 AGIAYVPQGREIF----PRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRP 150 (230)
T ss_pred hCeEEeccCCccc----CCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 5699999998753 34588877321 1 122233444332 67999999986 33 7899
Q ss_pred CEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChhhHHHh
Q 024032 198 DCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPGLRKCS 262 (273)
Q Consensus 198 ~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~l~~~~ 262 (273)
+++||||||++||+. +.+.++.++.+.|||++ .+||+++++++|++++.|+++++ ..+.+.+.|
T Consensus 151 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~-~~~~~~~~~ 228 (230)
T TIGR03410 151 KLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL-DEDKVRRYL 228 (230)
T ss_pred CEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc-ChHHHHHHh
Confidence 999999999999999 33455554347899888 46899999999999999999887 455555554
No 124
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=3.2e-38 Score=273.64 Aligned_cols=168 Identities=18% Similarity=0.224 Sum_probs=136.1
Q ss_pred EEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC--CCccEEE
Q 024032 68 ELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN--SSHTITM 144 (273)
Q Consensus 68 ~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~--~~~~i~~ 144 (273)
+++|++++|..+ +++ |+++||++++|++++|+||||||||||+++|+|+++ ++|+|.++|.++.. .++.++|
T Consensus 1 ~~~~l~~~~~~~-~~~----l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~ 75 (205)
T cd03226 1 RIENISFSYKKG-TEI----LDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGY 75 (205)
T ss_pred CcccEEEEeCCc-Cce----eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEE
Confidence 468899988532 456 999999999999999999999999999999999999 99999999998742 4567999
Q ss_pred EeccchhhhccCCcccccccccC-------CHHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCCEEEEcC
Q 024032 145 YMEEHNVMRSLQSGFCVYDSRGF-------NYNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDDCALMKN 204 (273)
Q Consensus 145 v~q~~~~~~~~~~~~tv~en~~~-------~~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~iLlLDE 204 (273)
++|++... ++..|+.||..+ ..+++.++++.++ ..||||||||. |+ +.+|++|||||
T Consensus 76 ~~q~~~~~---~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 152 (205)
T cd03226 76 VMQDVDYQ---LFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDE 152 (205)
T ss_pred EecChhhh---hhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 99987421 334588888432 1245667777766 67999999986 33 78999999999
Q ss_pred cCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEe
Q 024032 205 DAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSK 244 (273)
Q Consensus 205 Pts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~ 244 (273)
||++||+. +.++++.++ |.|||++ .+||++++|++|+++
T Consensus 153 Pt~~LD~~~~~~l~~~l~~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 153 PTSGLDYKNMERVGELIRELAAQ-GKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CCccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 99999999 345555544 8899888 468999999999975
No 125
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=4.4e-38 Score=310.90 Aligned_cols=217 Identities=15% Similarity=0.161 Sum_probs=174.5
Q ss_pred hhhhhhhhccchhhhhhhhHHHHHHHhchhh-h-c------c-CCCCceEEEEEEEEeecCC-eeeeccceeeeeeEEcC
Q 024032 28 KFDECVKLKLDLPNVSTLTPRLRVLREMERL-A-L------I-APDGLNELRHKFLSYRSGD-FWIPIGGIQKGGMDIPP 97 (273)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~-~------~-~~~~~i~~~~v~~~y~~g~-~~v~~~~L~~is~~i~~ 97 (273)
.+..+......+..+..+.+|+.++++.++. . . . ...+.++++|++|+|+.++ +.+ |+++||++++
T Consensus 290 pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~i----L~~inl~i~~ 365 (576)
T TIGR02204 290 SIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPA----LDGLNLTVRP 365 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCccCCcCCCceEEEEEEEEECCCCCCCcc----ccceeEEecC
Confidence 4555666667788899999999998865432 1 0 0 0123599999999997533 456 9999999999
Q ss_pred CcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCccccccccc-----
Q 024032 98 VITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSRG----- 166 (273)
Q Consensus 98 Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~~----- 166 (273)
||.++|+||||||||||+++|+|+++ ++|+|.++|.++.+ +++.+++++|++.+ |..|++||..
T Consensus 366 Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~l-----f~~Ti~~Ni~~~~~~ 440 (576)
T TIGR02204 366 GETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVL-----FAASVMENIRYGRPD 440 (576)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCcc-----ccccHHHHHhcCCCC
Confidence 99999999999999999999999999 99999999998864 45789999999884 5569999843
Q ss_pred CCHHHHHHHHHHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHH
Q 024032 167 FNYNRVHEGLEELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPK 216 (273)
Q Consensus 167 ~~~~~~~~~l~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~ 216 (273)
.+++++.++++.++ ..||||||||. |+ +++|++|||||||++||+. +.++
T Consensus 441 ~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~ 520 (576)
T TIGR02204 441 ATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALE 520 (576)
T ss_pred CCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHH
Confidence 34667777766654 46999999986 44 8999999999999999999 2233
Q ss_pred HHHhcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccC
Q 024032 217 YVLRRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSA 255 (273)
Q Consensus 217 ~l~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~ 255 (273)
.+.+ ++|+|+| ..+|++++|++|++++.|+++++.+.
T Consensus 521 ~~~~--~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~~ 564 (576)
T TIGR02204 521 TLMK--GRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAK 564 (576)
T ss_pred HHhC--CCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHHc
Confidence 3432 7899888 45899999999999999999998754
No 126
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.1e-38 Score=285.11 Aligned_cols=183 Identities=15% Similarity=0.135 Sum_probs=146.6
Q ss_pred ceEEEEEEEEeecCC---eeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC----
Q 024032 66 LNELRHKFLSYRSGD---FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~---~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---- 137 (273)
.++++|++++|..+. +.+ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~----l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 77 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKG----LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGN 77 (287)
T ss_pred EEEEEEEEEEcCCCCCccccc----eeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECcccccc
Confidence 478999999996321 346 999999999999999999999999999999999999 99999999998742
Q ss_pred -----CCccEEEEeccchhhhccCCcccccccccC-------C----HHHHHHHHHHhc----------ccCCHHHHHHH
Q 024032 138 -----SSHTITMYMEEHNVMRSLQSGFCVYDSRGF-------N----YNRVHEGLEELS----------SWMSEGVHHNQ 191 (273)
Q Consensus 138 -----~~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~----~~~~~~~l~~~~----------~~LSgGqkq~~ 191 (273)
.++.++|++|++.. .++.+|+.||..+ . .+.+.++++.++ ..||||||||.
T Consensus 78 ~~~~~~~~~ig~v~q~~~~---~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl 154 (287)
T PRK13641 78 KNLKKLRKKVSLVFQFPEA---QLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRV 154 (287)
T ss_pred chHHHHHhceEEEEeChhh---hhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHH
Confidence 23579999998732 1334688887421 1 123455555554 57999999986
Q ss_pred ---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhc
Q 024032 192 ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLF 253 (273)
Q Consensus 192 ---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~ 253 (273)
|+ +.+|++|||||||+|||+. +.++++.++ |.|||++ .+||++++|++|+++..|++++++
T Consensus 155 ~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~-g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13641 155 AIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKA-GHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIF 233 (287)
T ss_pred HHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 33 7899999999999999999 345556544 8999998 568999999999999999999887
Q ss_pred cCh
Q 024032 254 SAP 256 (273)
Q Consensus 254 ~~~ 256 (273)
...
T Consensus 234 ~~~ 236 (287)
T PRK13641 234 SDK 236 (287)
T ss_pred cCH
Confidence 653
No 127
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.5e-38 Score=283.91 Aligned_cols=185 Identities=17% Similarity=0.204 Sum_probs=149.0
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CC
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SS 139 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~ 139 (273)
+++++|++++|.. +..+ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++.. .+
T Consensus 3 ~l~~~~l~~~~~~-~~~~----l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 77 (277)
T PRK13652 3 LIETRDLCYSYSG-SKEA----LNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVR 77 (277)
T ss_pred eEEEEEEEEEeCC-CCce----eeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHH
Confidence 5889999999953 2346 999999999999999999999999999999999999 99999999998753 34
Q ss_pred ccEEEEeccchhhhccCCccccccccc-------CCH----HHHHHHHHHhc---------ccCCHHHHHHH---Hh-cC
Q 024032 140 HTITMYMEEHNVMRSLQSGFCVYDSRG-------FNY----NRVHEGLEELS---------SWMSEGVHHNQ---RC-LR 195 (273)
Q Consensus 140 ~~i~~v~q~~~~~~~~~~~~tv~en~~-------~~~----~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~ 195 (273)
+.+++++|++... ++..|+.+|.. .+. +.+.++++.++ ..||||||||. |+ +.
T Consensus 78 ~~i~~v~q~~~~~---~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~ 154 (277)
T PRK13652 78 KFVGLVFQNPDDQ---IFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAM 154 (277)
T ss_pred hheEEEecCcccc---cccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHc
Confidence 5789999987421 33458888742 222 23455566655 67999999986 33 78
Q ss_pred CCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChhh
Q 024032 196 SDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPGL 258 (273)
Q Consensus 196 ~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~l 258 (273)
+|++|||||||+|||+. +.++++.++.|.|||++ ..||++++|++|+++..|+++++++.+.+
T Consensus 155 ~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~~~ 231 (277)
T PRK13652 155 EPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQPDL 231 (277)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcCHHH
Confidence 99999999999999999 33555655448899988 56899999999999999999998765543
No 128
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.6e-39 Score=272.98 Aligned_cols=188 Identities=16% Similarity=0.208 Sum_probs=152.6
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC----CCc
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN----SSH 140 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~----~~~ 140 (273)
++++.+++++|+. .+ +|++||||+++.|+++||+|||||||||+|++|++++. ++|.|+++|.+... .++
T Consensus 1 Ml~v~~l~K~y~~---~v--~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr 75 (245)
T COG4555 1 MLEVTDLTKSYGS---KV--QAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRR 75 (245)
T ss_pred CeeeeehhhhccC---HH--hhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhh
Confidence 4789999999964 22 46999999999999999999999999999999999998 99999999998753 678
Q ss_pred cEEEEeccchhhhccCCcccccccc-------cCCH----HHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCC
Q 024032 141 TITMYMEEHNVMRSLQSGFCVYDSR-------GFNY----NRVHEGLEELS---------SWMSEGVHHNQ---RC-LRS 196 (273)
Q Consensus 141 ~i~~v~q~~~~~~~~~~~~tv~en~-------~~~~----~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~ 196 (273)
+||.++.+..+ +..+|++||. ++.. .++.+..+.++ ..||.|||||+ |+ +++
T Consensus 76 ~IGVl~~e~gl----Y~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~ 151 (245)
T COG4555 76 KIGVLFGERGL----YARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHD 151 (245)
T ss_pred hcceecCCcCh----hhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcC
Confidence 89999866665 4556999993 2232 33444444444 78999999986 44 899
Q ss_pred CCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhcc---ChhhH
Q 024032 197 DDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFS---APGLR 259 (273)
Q Consensus 197 p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~---~~~l~ 259 (273)
|++++|||||+|||.. +.++.++++ |++||++ .+||+++++++|+++..|+++++.. ...++
T Consensus 152 P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~e-gr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r~~~~~le 230 (245)
T COG4555 152 PSILVLDEPTSGLDIRTRRKFHDFIKQLKNE-GRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDARTVLRNLE 230 (245)
T ss_pred CCeEEEcCCCCCccHHHHHHHHHHHHHhhcC-CcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHHHhhcCHH
Confidence 9999999999999999 334555555 9999999 5799999999999999999999864 24566
Q ss_pred HHhC
Q 024032 260 KCSK 263 (273)
Q Consensus 260 ~~~~ 263 (273)
+.|-
T Consensus 231 ~~f~ 234 (245)
T COG4555 231 EIFA 234 (245)
T ss_pred HHHH
Confidence 6554
No 129
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.8e-38 Score=290.29 Aligned_cols=185 Identities=16% Similarity=0.168 Sum_probs=147.0
Q ss_pred ceEEEEEEEEeec--CCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-----CccEEEECCeeCCCC
Q 024032 66 LNELRHKFLSYRS--GDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-----RSGLVLFAQTSSGNS 138 (273)
Q Consensus 66 ~i~~~~v~~~y~~--g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-----~~G~I~i~g~~i~~~ 138 (273)
+++++|++++|.. +...+ |+++||+|++||++||+|+||||||||+++|+|+++ ++|+|.++|+++...
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~----l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~ 78 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKA----VDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRL 78 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEE----EeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcC
Confidence 6899999999964 23445 999999999999999999999999999999999984 689999999987531
Q ss_pred ---------CccEEEEeccchhhhccCCcccccccccC-----------------CHHHHHHHHHHhc------------
Q 024032 139 ---------SHTITMYMEEHNVMRSLQSGFCVYDSRGF-----------------NYNRVHEGLEELS------------ 180 (273)
Q Consensus 139 ---------~~~i~~v~q~~~~~~~~~~~~tv~en~~~-----------------~~~~~~~~l~~~~------------ 180 (273)
++.++|++|++... +...+||.++... ..+++.++++.++
T Consensus 79 ~~~~~~~~~~~~i~~v~Q~~~~~--l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p 156 (330)
T PRK15093 79 SPRERRKLVGHNVSMIFQEPQSC--LDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFP 156 (330)
T ss_pred CHHHHHHHhCCCEEEEecCcchh--cCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCc
Confidence 24699999997631 1233455544210 1234556666655
Q ss_pred ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCe
Q 024032 181 SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGD 242 (273)
Q Consensus 181 ~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~ 242 (273)
.+|||||+||+ ++ +.+|++|||||||++||+. ++++++.++.|.|||+| .+||+|++|++|+
T Consensus 157 ~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ 236 (330)
T PRK15093 157 YELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQ 236 (330)
T ss_pred hhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCE
Confidence 47999999987 33 7899999999999999999 44566665558999999 5689999999999
Q ss_pred EeeecChhhhccCh
Q 024032 243 SKPLDATKRLFSAP 256 (273)
Q Consensus 243 i~~~g~~~~l~~~~ 256 (273)
|++.|++++++.++
T Consensus 237 ive~g~~~~i~~~p 250 (330)
T PRK15093 237 TVETAPSKELVTTP 250 (330)
T ss_pred EEEECCHHHHHhCC
Confidence 99999999998653
No 130
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=6.4e-38 Score=284.49 Aligned_cols=181 Identities=15% Similarity=0.222 Sum_probs=150.6
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeCCC-----CCc
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGN-----SSH 140 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i~~-----~~~ 140 (273)
.++++|++++|..++..+ |+++||+|++||+++|+||||||||||+++|+|+++++|+|+++|.++.. +++
T Consensus 2 ~i~~~nls~~~~~~~~~~----l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~i~~~~~~~lr~ 77 (275)
T cd03289 2 QMTVKDLTAKYTEGGNAV----LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQKWRK 77 (275)
T ss_pred eEEEEEEEEEeCCCCCcc----eeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEhhhCCHHHHhh
Confidence 478999999997555556 99999999999999999999999999999999998888999999998753 467
Q ss_pred cEEEEeccchhhhccCCccccccccc----CCHHHHHHHHHHhc---------c-----------cCCHHHHHHH---Hh
Q 024032 141 TITMYMEEHNVMRSLQSGFCVYDSRG----FNYNRVHEGLEELS---------S-----------WMSEGVHHNQ---RC 193 (273)
Q Consensus 141 ~i~~v~q~~~~~~~~~~~~tv~en~~----~~~~~~~~~l~~~~---------~-----------~LSgGqkq~~---r~ 193 (273)
.+++++|++.+| ..|+++|.. ...+++.++++.++ . .||+||+||. |+
T Consensus 78 ~i~~v~q~~~lf-----~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRa 152 (275)
T cd03289 78 AFGVIPQKVFIF-----SGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARS 152 (275)
T ss_pred hEEEECCCcccc-----hhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHH
Confidence 899999998754 348888852 34566777777766 2 3999999986 44
Q ss_pred -cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccChh
Q 024032 194 -LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSAPG 257 (273)
Q Consensus 194 -l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~~ 257 (273)
+++|++|||||||++||+. +.++.+. .++|||+| ..||+|++|++|++++.|+++++++.+.
T Consensus 153 ll~~p~illlDEpts~LD~~~~~~l~~~l~~~~--~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~~~ 228 (275)
T cd03289 153 VLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF--ADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKS 228 (275)
T ss_pred HhcCCCEEEEECccccCCHHHHHHHHHHHHHhc--CCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhCcH
Confidence 8999999999999999999 2233332 27899988 4489999999999999999999987653
No 131
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=1.4e-37 Score=279.45 Aligned_cols=188 Identities=14% Similarity=0.195 Sum_probs=151.4
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-C---ccEEEECCeeCCC----
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R---SGLVLFAQTSSGN---- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~---~G~I~i~g~~i~~---- 137 (273)
+++++|++++|. ++.+ |+++||++++||+++|+||||||||||+++|+|+++ + +|+|.++|.++..
T Consensus 4 ~l~~~nl~~~~~--~~~i----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~ 77 (262)
T PRK09984 4 IIRVEKLAKTFN--QHQA----LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRL 77 (262)
T ss_pred EEEEeeEEEEeC--CeEE----EecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEeccccccc
Confidence 689999999984 4567 999999999999999999999999999999999987 5 4999999988742
Q ss_pred ------CCccEEEEeccchhhhccCCcccccccccC----------------C---HHHHHHHHHHhc---------ccC
Q 024032 138 ------SSHTITMYMEEHNVMRSLQSGFCVYDSRGF----------------N---YNRVHEGLEELS---------SWM 183 (273)
Q Consensus 138 ------~~~~i~~v~q~~~~~~~~~~~~tv~en~~~----------------~---~~~~~~~l~~~~---------~~L 183 (273)
.++.++|++|++.+ ++.+|+++|..+ . .+++.++++.++ ..|
T Consensus 78 ~~~~~~~~~~i~~~~q~~~~----~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 153 (262)
T PRK09984 78 ARDIRKSRANTGYIFQQFNL----VNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTL 153 (262)
T ss_pred chhHHHHHhheEEEcccccc----ccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCcccc
Confidence 24568999998765 344588877321 1 123556666665 679
Q ss_pred CHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEee
Q 024032 184 SEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKP 245 (273)
Q Consensus 184 SgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~ 245 (273)
|+|||||. |+ +.+|++|||||||++||+. +.++++.++.|.|||++ .+||++++|++|+++.
T Consensus 154 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~ 233 (262)
T PRK09984 154 SGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFY 233 (262)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999986 33 7899999999999999999 34566654448899998 5689999999999999
Q ss_pred ecChhhhccChhhHHHhCC
Q 024032 246 LDATKRLFSAPGLRKCSKI 264 (273)
Q Consensus 246 ~g~~~~l~~~~~l~~~~~~ 264 (273)
.|+++++ +++.+.+.|..
T Consensus 234 ~g~~~~~-~~~~~~~~~~~ 251 (262)
T PRK09984 234 DGSSQQF-DNERFDHLYRS 251 (262)
T ss_pred eCCHHHh-ccHHHHHHHhh
Confidence 9999986 55666666653
No 132
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=6.9e-38 Score=273.64 Aligned_cols=173 Identities=12% Similarity=0.143 Sum_probs=139.6
Q ss_pred ceEEEEEEEEeecCCe--eeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC----C
Q 024032 66 LNELRHKFLSYRSGDF--WIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN----S 138 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~--~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~----~ 138 (273)
+++++|++++|+.... ++ |+++||++++||+++|+||||||||||+++|+|+++ ++|+|.++|+++.. .
T Consensus 1 ~l~~~~v~~~~~~~~~~~~i----l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~ 76 (218)
T cd03266 1 MITADALTKRFRDVKKTVQA----VDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEA 76 (218)
T ss_pred CeEEEEEEEecCCCCcccee----ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHH
Confidence 3689999999953211 56 999999999999999999999999999999999998 99999999998753 3
Q ss_pred CccEEEEeccchhhhccCCccccccccc-------CC----HHHHHHHHHHhc---------ccCCHHHHHHH---Hh-c
Q 024032 139 SHTITMYMEEHNVMRSLQSGFCVYDSRG-------FN----YNRVHEGLEELS---------SWMSEGVHHNQ---RC-L 194 (273)
Q Consensus 139 ~~~i~~v~q~~~~~~~~~~~~tv~en~~-------~~----~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l 194 (273)
++.+++++|++.+ +...|++||.. .. .+++.++++.++ .+||||||||. |+ +
T Consensus 77 ~~~i~~~~q~~~~----~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~ 152 (218)
T cd03266 77 RRRLGFVSDSTGL----YDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALV 152 (218)
T ss_pred HhhEEEecCCccc----CcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHh
Confidence 5679999999864 34458888732 11 234455666665 67999999986 33 7
Q ss_pred CCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeec
Q 024032 195 RSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLD 247 (273)
Q Consensus 195 ~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g 247 (273)
.+|++|||||||++||+. +.++++.++ |.|||++ .+||++++|++|++++.|
T Consensus 153 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 153 HDPPVLLLDEPTTGLDVMATRALREFIRQLRAL-GKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred cCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 899999999999999999 345556544 8899998 468999999999998653
No 133
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=1.2e-37 Score=289.31 Aligned_cols=187 Identities=17% Similarity=0.227 Sum_probs=148.3
Q ss_pred CCceEEEEEEEEeecC--CeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-C---ccEEEECCeeCCC
Q 024032 64 DGLNELRHKFLSYRSG--DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R---SGLVLFAQTSSGN 137 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g--~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~---~G~I~i~g~~i~~ 137 (273)
...++++|++++|..+ ...+ |+++||+|++||++||+|+||||||||+++|+|+++ . +|+|.++|+++..
T Consensus 10 ~~~L~i~~l~~~~~~~~~~~~~----l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~ 85 (330)
T PRK09473 10 DALLDVKDLRVTFSTPDGDVTA----VNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILN 85 (330)
T ss_pred CceEEEeCeEEEEecCCCCEEE----EeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCc
Confidence 4579999999999643 2345 999999999999999999999999999999999998 6 9999999998853
Q ss_pred C---------CccEEEEeccchhhhccCCcccccccc--------cCCH----HHHHHHHHHhc------------ccCC
Q 024032 138 S---------SHTITMYMEEHNVMRSLQSGFCVYDSR--------GFNY----NRVHEGLEELS------------SWMS 184 (273)
Q Consensus 138 ~---------~~~i~~v~q~~~~~~~~~~~~tv~en~--------~~~~----~~~~~~l~~~~------------~~LS 184 (273)
. ++.+++++|++... +...+|+.++. +... +++.+.++.++ .+||
T Consensus 86 ~~~~~~~~~r~~~i~~v~Q~~~~~--l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LS 163 (330)
T PRK09473 86 LPEKELNKLRAEQISMIFQDPMTS--LNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFS 163 (330)
T ss_pred CCHHHHHHHhcCCEEEEEcCchhh--cCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCC
Confidence 1 24799999998421 12334554431 1222 23445555543 6799
Q ss_pred HHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeee
Q 024032 185 EGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPL 246 (273)
Q Consensus 185 gGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~ 246 (273)
|||+||. |+ +.+|++||+||||++||+. +.++++.++.|.|+|+| .+||+|++|++|+|++.
T Consensus 164 gG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~ 243 (330)
T PRK09473 164 GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEY 243 (330)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999987 33 7899999999999999999 34566766568999999 46899999999999999
Q ss_pred cChhhhccCh
Q 024032 247 DATKRLFSAP 256 (273)
Q Consensus 247 g~~~~l~~~~ 256 (273)
|+++++++++
T Consensus 244 g~~~~i~~~p 253 (330)
T PRK09473 244 GNARDVFYQP 253 (330)
T ss_pred CCHHHHHhCC
Confidence 9999998654
No 134
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=8.3e-38 Score=274.91 Aligned_cols=173 Identities=22% Similarity=0.279 Sum_probs=139.2
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCc-----c-CccEEEECCeeCCC---
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVL-----S-RSGLVLFAQTSSGN--- 137 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~-----~-~~G~I~i~g~~i~~--- 137 (273)
++++|++++|+ ++++ |+++||+|++||+++|+||||||||||+++|+|++ + ++|+|.++|+++..
T Consensus 1 i~~~~l~~~~~--~~~~----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~ 74 (227)
T cd03260 1 IELRDLNVYYG--DKHA----LKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDV 74 (227)
T ss_pred CEEEEEEEEcC--Ccee----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcch
Confidence 47899999984 4566 99999999999999999999999999999999999 8 99999999998743
Q ss_pred ----CCccEEEEeccchhhhccCCcccccccccC--------C----HHHHHHHHHHhc-----------ccCCHHHHHH
Q 024032 138 ----SSHTITMYMEEHNVMRSLQSGFCVYDSRGF--------N----YNRVHEGLEELS-----------SWMSEGVHHN 190 (273)
Q Consensus 138 ----~~~~i~~v~q~~~~~~~~~~~~tv~en~~~--------~----~~~~~~~l~~~~-----------~~LSgGqkq~ 190 (273)
.++.++|++|++.+ + .+|++||..+ . .+++.++++.++ .+||||||||
T Consensus 75 ~~~~~~~~i~~~~q~~~~----~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qr 149 (227)
T cd03260 75 DVLELRRRVGMVFQKPNP----F-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQR 149 (227)
T ss_pred HHHHHHhhEEEEecCchh----c-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHH
Confidence 24579999998764 3 5688887321 1 123445555543 4699999998
Q ss_pred H---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhh
Q 024032 191 Q---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRL 252 (273)
Q Consensus 191 ~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l 252 (273)
. |+ +.+|++|||||||++||+. +.++++.++ .|||++ .+||++++|++|++++.|+++++
T Consensus 150 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 150 LCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE--YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227 (227)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC--cEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence 6 33 7899999999999999999 335555543 788888 46899999999999999887653
No 135
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=1.2e-37 Score=280.58 Aligned_cols=183 Identities=18% Similarity=0.221 Sum_probs=146.8
Q ss_pred ceEEEEEEEEeecC-------CeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC
Q 024032 66 LNELRHKFLSYRSG-------DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g-------~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~ 137 (273)
+++++|++++|..+ ++.+ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~i----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~ 77 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPV----LTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQ 77 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEE----eeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccc
Confidence 57899999999632 3556 999999999999999999999999999999999999 99999999998753
Q ss_pred --------CCccEEEEeccchhhhccCCccccccccc--------CC----HHHHHHHHHHhc----------ccCCHHH
Q 024032 138 --------SSHTITMYMEEHNVMRSLQSGFCVYDSRG--------FN----YNRVHEGLEELS----------SWMSEGV 187 (273)
Q Consensus 138 --------~~~~i~~v~q~~~~~~~~~~~~tv~en~~--------~~----~~~~~~~l~~~~----------~~LSgGq 187 (273)
.++.+++++|++... +....|++||.. .. .+++.++++.++ ..|||||
T Consensus 78 ~~~~~~~~~~~~i~~v~q~~~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe 155 (265)
T TIGR02769 78 LDRKQRRAFRRDVQLVFQDSPSA--VNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQ 155 (265)
T ss_pred cCHHHHHHHhhceEEEecChhhh--cCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHH
Confidence 245699999987411 133457777631 11 234455666554 5799999
Q ss_pred HHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecCh
Q 024032 188 HHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDAT 249 (273)
Q Consensus 188 kq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~ 249 (273)
+||. |+ +.+|++|||||||++||+. +.++++.++.|.|||++ .+||++++|++|++++.|++
T Consensus 156 ~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~ 235 (265)
T TIGR02769 156 LQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDV 235 (265)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCH
Confidence 9986 33 7899999999999999999 34556655448899998 46899999999999999999
Q ss_pred hhhcc
Q 024032 250 KRLFS 254 (273)
Q Consensus 250 ~~l~~ 254 (273)
++++.
T Consensus 236 ~~~~~ 240 (265)
T TIGR02769 236 AQLLS 240 (265)
T ss_pred HHHcC
Confidence 99975
No 136
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-37 Score=274.01 Aligned_cols=185 Identities=19% Similarity=0.276 Sum_probs=149.8
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC---CCcc
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---SSHT 141 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---~~~~ 141 (273)
+++++|++++|.. . ..++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|+++.. .++.
T Consensus 1 ~l~~~~l~~~~~~----~----~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 72 (232)
T PRK10771 1 MLKLTDITWLYHH----L----PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRP 72 (232)
T ss_pred CeEEEEEEEEECC----c----cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhcc
Confidence 3789999999952 1 448999999999999999999999999999999999 99999999998753 2457
Q ss_pred EEEEeccchhhhccCCcccccccccC-----------CHHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCC
Q 024032 142 ITMYMEEHNVMRSLQSGFCVYDSRGF-----------NYNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSD 197 (273)
Q Consensus 142 i~~v~q~~~~~~~~~~~~tv~en~~~-----------~~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p 197 (273)
++|++|++.++ ..+|+.+|..+ ..+++.++++.++ ..|||||+||. |+ +.+|
T Consensus 73 i~~~~q~~~~~----~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p 148 (232)
T PRK10771 73 VSMLFQENNLF----SHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQ 148 (232)
T ss_pred EEEEecccccc----cCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCC
Confidence 99999987653 34578877421 1234566666665 67999999986 33 7999
Q ss_pred CEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChhhHHHh
Q 024032 198 DCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPGLRKCS 262 (273)
Q Consensus 198 ~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~l~~~~ 262 (273)
++|||||||++||+. +.++++.++.|.|||++ .+||++++|++|++++.|++++++..+.+...|
T Consensus 149 ~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~~~~~~~~ 227 (232)
T PRK10771 149 PILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSGKASASAL 227 (232)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhChhHHHHh
Confidence 999999999999999 33555554447899888 468999999999999999999998777666665
No 137
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.8e-38 Score=283.54 Aligned_cols=179 Identities=19% Similarity=0.258 Sum_probs=144.0
Q ss_pred EEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCC--------
Q 024032 68 ELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNS-------- 138 (273)
Q Consensus 68 ~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~-------- 138 (273)
.++++++.| +++++ |+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|.++...
T Consensus 26 ~~~~~~~~~--~~~~i----l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~ 99 (269)
T cd03294 26 SKEEILKKT--GQTVG----VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELREL 99 (269)
T ss_pred hhhhhhhhc--CCceE----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhh
Confidence 355677776 45667 999999999999999999999999999999999999 999999999987531
Q ss_pred -CccEEEEeccchhhhccCCcccccccccC-------C----HHHHHHHHHHhc---------ccCCHHHHHHH---Hh-
Q 024032 139 -SHTITMYMEEHNVMRSLQSGFCVYDSRGF-------N----YNRVHEGLEELS---------SWMSEGVHHNQ---RC- 193 (273)
Q Consensus 139 -~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~----~~~~~~~l~~~~---------~~LSgGqkq~~---r~- 193 (273)
++.+++++|++.+ ++.+|+.+|..+ . .+.+.+.++.++ .+||||||||. |+
T Consensus 100 ~~~~i~~v~q~~~~----~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral 175 (269)
T cd03294 100 RRKKISMVFQSFAL----LPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARAL 175 (269)
T ss_pred hcCcEEEEecCccc----CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHH
Confidence 3569999998765 345588887421 1 123455666655 67999999987 33
Q ss_pred cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 194 LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 194 l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
+.+|++|||||||+|||+. +.++++.++.|.|||++ .+||++++|++|++++.|+++++++.+
T Consensus 176 ~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 252 (269)
T cd03294 176 AVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNP 252 (269)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhCc
Confidence 7999999999999999999 33555654447899888 568999999999999999999987644
No 138
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-37 Score=278.63 Aligned_cols=182 Identities=19% Similarity=0.239 Sum_probs=145.8
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-C-----ccEEEECCeeCCC
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R-----SGLVLFAQTSSGN 137 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~-----~G~I~i~g~~i~~ 137 (273)
+.++++++++++|. +.++ |+++||+|++||+++|+||||||||||+++|+|+++ + +|+|+++|+++..
T Consensus 5 ~~~l~~~~l~~~~~--~~~i----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 78 (254)
T PRK14273 5 EAIIETENLNLFYT--DFKA----LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYS 78 (254)
T ss_pred CceEEEeeeEEEeC--Ccee----ecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccc
Confidence 45799999999994 3556 999999999999999999999999999999999987 4 8999999988631
Q ss_pred -------CCccEEEEeccchhhhccCCcccccccccC--------C----HHHHHHHHHHhc-------------ccCCH
Q 024032 138 -------SSHTITMYMEEHNVMRSLQSGFCVYDSRGF--------N----YNRVHEGLEELS-------------SWMSE 185 (273)
Q Consensus 138 -------~~~~i~~v~q~~~~~~~~~~~~tv~en~~~--------~----~~~~~~~l~~~~-------------~~LSg 185 (273)
.++.++|++|++..+ ..|++||..+ . .+.+.++++.++ ..|||
T Consensus 79 ~~~~~~~~~~~i~~v~q~~~~~-----~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSg 153 (254)
T PRK14273 79 NNFDILELRRKIGMVFQTPNPF-----LMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSG 153 (254)
T ss_pred ccccHHHHhhceEEEeeccccc-----cCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCH
Confidence 356799999997642 3588887321 1 123344444332 67999
Q ss_pred HHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeec
Q 024032 186 GVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLD 247 (273)
Q Consensus 186 Gqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g 247 (273)
|||||. |+ +.+|++|||||||++||+. +.++++. + +.|||++ .+||++++|++|+++..|
T Consensus 154 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g 231 (254)
T PRK14273 154 GQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-E-SYTIIIVTHNMQQAGRISDRTAFFLNGCIEEES 231 (254)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999986 33 7899999999999999999 3455664 3 6888888 568999999999999999
Q ss_pred ChhhhccChhh
Q 024032 248 ATKRLFSAPGL 258 (273)
Q Consensus 248 ~~~~l~~~~~l 258 (273)
+++++++++..
T Consensus 232 ~~~~~~~~~~~ 242 (254)
T PRK14273 232 STDELFFNPKN 242 (254)
T ss_pred CHHHHHhCCCC
Confidence 99999865443
No 139
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-37 Score=276.62 Aligned_cols=180 Identities=16% Similarity=0.209 Sum_probs=144.7
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCc
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSH 140 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~ 140 (273)
+++++++++|+.. +.+ |+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|+++.. .++
T Consensus 1 l~~~~l~~~~~~~-~~~----l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 75 (242)
T cd03295 1 IEFENVTKRYGGG-KKA----VNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRR 75 (242)
T ss_pred CEEEEEEEEeCCc-ceE----eeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhc
Confidence 4689999998531 456 999999999999999999999999999999999999 99999999998753 345
Q ss_pred cEEEEeccchhhhccCCcccccccccC-------C----HHHHHHHHHHhc-----------ccCCHHHHHHH---Hh-c
Q 024032 141 TITMYMEEHNVMRSLQSGFCVYDSRGF-------N----YNRVHEGLEELS-----------SWMSEGVHHNQ---RC-L 194 (273)
Q Consensus 141 ~i~~v~q~~~~~~~~~~~~tv~en~~~-------~----~~~~~~~l~~~~-----------~~LSgGqkq~~---r~-l 194 (273)
.++|++|++.+ +...|++||..+ + .+.+.++++.++ .+|||||+||. |+ +
T Consensus 76 ~i~~~~q~~~~----~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~ 151 (242)
T cd03295 76 KIGYVIQQIGL----FPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALA 151 (242)
T ss_pred ceEEEccCccc----cCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHh
Confidence 78999998765 344588887321 1 123445555443 56999999986 33 7
Q ss_pred CCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccC
Q 024032 195 RSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSA 255 (273)
Q Consensus 195 ~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~ 255 (273)
.+|++|||||||++||+. +.++++.++.|.|||++ .+||++++|++|++++.|+++++...
T Consensus 152 ~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 226 (242)
T cd03295 152 ADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226 (242)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcC
Confidence 999999999999999999 33455554347898888 56899999999999999999888654
No 140
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.3e-38 Score=296.42 Aligned_cols=166 Identities=20% Similarity=0.338 Sum_probs=137.6
Q ss_pred ceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCC---------CccEEEEeccchhhhccC
Q 024032 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNS---------SHTITMYMEEHNVMRSLQ 156 (273)
Q Consensus 87 ~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~---------~~~i~~v~q~~~~~~~~~ 156 (273)
+|+++||+|++||+++|+||||||||||+|+|+|+++ ++|+|+++|+++... ++.++|++|++.++
T Consensus 43 ~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~---- 118 (400)
T PRK10070 43 GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALM---- 118 (400)
T ss_pred EEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCC----
Confidence 4999999999999999999999999999999999999 999999999987531 35799999998753
Q ss_pred Cccccccccc-------CC----HHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH
Q 024032 157 SGFCVYDSRG-------FN----YNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK 212 (273)
Q Consensus 157 ~~~tv~en~~-------~~----~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~ 212 (273)
+.+|+.||.. .. .+++.++++.++ .+||||||||. |+ +.+|++|||||||++||+.
T Consensus 119 ~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~ 198 (400)
T PRK10070 119 PHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPL 198 (400)
T ss_pred CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHH
Confidence 4458998842 12 234556677665 67999999987 33 7899999999999999999
Q ss_pred ------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 213 ------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 213 ------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
+.++++.++.|+|||++ ++||++++|++|+++..|++++++..+
T Consensus 199 ~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~~ 256 (400)
T PRK10070 199 IRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNP 256 (400)
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhCc
Confidence 33555554448899888 568999999999999999999987654
No 141
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=8.6e-38 Score=336.93 Aligned_cols=216 Identities=16% Similarity=0.144 Sum_probs=174.0
Q ss_pred hhhhhccchhhhhhhhHHHHHHHhc-hhhh-------------------------------c----c--CCCCceEEEEE
Q 024032 31 ECVKLKLDLPNVSTLTPRLRVLREM-ERLA-------------------------------L----I--APDGLNELRHK 72 (273)
Q Consensus 31 ~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~-------------------------------~----~--~~~~~i~~~~v 72 (273)
.+.....+++.+..+.+|+.++.+. +.+. . + ...+.|+|+||
T Consensus 1235 ~l~~~~~~le~~~~s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nV 1314 (1560)
T PTZ00243 1235 WLVRQVATVEADMNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGV 1314 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEE
Confidence 3344446677888899999988752 1110 0 0 01246999999
Q ss_pred EEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEe
Q 024032 73 FLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYM 146 (273)
Q Consensus 73 ~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~ 146 (273)
+|+|+.+..++ |+|+||+|++||.+||||+||||||||+++|.|+++ ++|+|.+||.++.+ +|+.+++++
T Consensus 1315 sf~Y~~~~~~v----L~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVp 1390 (1560)
T PTZ00243 1315 QMRYREGLPLV----LRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIP 1390 (1560)
T ss_pred EEEeCCCCCce----eecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEEC
Confidence 99997655557 999999999999999999999999999999999999 99999999999864 678999999
Q ss_pred ccchhhhccCCccccccccc----CCHHHHHHHHHHhc--------------------ccCCHHHHHHH---Hh-cCC-C
Q 024032 147 EEHNVMRSLQSGFCVYDSRG----FNYNRVHEGLEELS--------------------SWMSEGVHHNQ---RC-LRS-D 197 (273)
Q Consensus 147 q~~~~~~~~~~~~tv~en~~----~~~~~~~~~l~~~~--------------------~~LSgGqkq~~---r~-l~~-p 197 (273)
|++.+ |..||++|.. .+++++.++++.++ .+||||||||. |+ +++ |
T Consensus 1391 Qdp~L-----F~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~ 1465 (1560)
T PTZ00243 1391 QDPVL-----FDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGS 1465 (1560)
T ss_pred CCCcc-----ccccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCC
Confidence 99984 4569999943 46788888888765 47999999986 55 675 8
Q ss_pred CEEEEcCcCCCCCHH--HHHHH-HHh-cCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccC
Q 024032 198 DCALMKNDAEIDDLK--SSPKY-VLR-RVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSA 255 (273)
Q Consensus 198 ~iLlLDEPts~LD~~--~~l~~-l~~-~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~ 255 (273)
+|||||||||+||+. ..+.+ +.+ ..++|+|+| ..||+|+||++|+|++.|+|++++++
T Consensus 1466 ~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~ 1534 (1560)
T PTZ00243 1466 GFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMN 1534 (1560)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999 33332 222 127899988 55899999999999999999999863
No 142
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-37 Score=278.48 Aligned_cols=174 Identities=14% Similarity=0.162 Sum_probs=141.0
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEEE
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~~ 144 (273)
+++++|+++.|. ++.+ |+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|+++......+++
T Consensus 1 ml~~~~l~~~~~--~~~i----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 74 (255)
T PRK11248 1 MLQISHLYADYG--GKPA----LEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGV 74 (255)
T ss_pred CEEEEEEEEEeC--Ceee----EeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEE
Confidence 378999999984 4566 999999999999999999999999999999999999 999999999988655556899
Q ss_pred EeccchhhhccCCcccccccccC-------C----HHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCCEE
Q 024032 145 YMEEHNVMRSLQSGFCVYDSRGF-------N----YNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDDCA 200 (273)
Q Consensus 145 v~q~~~~~~~~~~~~tv~en~~~-------~----~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~iL 200 (273)
++|++.+ +...|+.+|..+ . .+.+.+.++.++ ..||||||||. |+ +.+|++|
T Consensus 75 v~q~~~~----~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~ll 150 (255)
T PRK11248 75 VFQNEGL----LPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLL 150 (255)
T ss_pred EeCCCcc----CCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 9998765 334588887321 1 123556666665 67999999986 33 7899999
Q ss_pred EEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEe--CCeEeeecCh
Q 024032 201 LMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALK--AGDSKPLDAT 249 (273)
Q Consensus 201 lLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~--~G~i~~~g~~ 249 (273)
||||||++||+. +.++++.++.|.|||++ .+||++++|+ +|++++.++.
T Consensus 151 lLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 151 LLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 999999999999 33555544348899988 5689999998 5999987654
No 143
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-37 Score=270.81 Aligned_cols=170 Identities=16% Similarity=0.212 Sum_probs=137.9
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-CCccEEE
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-SSHTITM 144 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-~~~~i~~ 144 (273)
++++|+++.|. ++.+ |+++||++++|++++|+||||||||||+++|+|+++ ++|+|.++|+++.. .++.+++
T Consensus 1 l~~~~l~~~~~--~~~~----l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~ 74 (210)
T cd03269 1 LEVENVTKRFG--RVTA----LDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGY 74 (210)
T ss_pred CEEEEEEEEEC--CEEE----EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEE
Confidence 47899999984 4567 999999999999999999999999999999999998 99999999988753 4567999
Q ss_pred EeccchhhhccCCcccccccccC-------C----HHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCCEE
Q 024032 145 YMEEHNVMRSLQSGFCVYDSRGF-------N----YNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDDCA 200 (273)
Q Consensus 145 v~q~~~~~~~~~~~~tv~en~~~-------~----~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~iL 200 (273)
++|++.+ +...|+.||..+ . .+.+.+.++.++ .+||||||||. ++ +.+|++|
T Consensus 75 ~~q~~~~----~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~l 150 (210)
T cd03269 75 LPEERGL----YPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELL 150 (210)
T ss_pred eccCCcC----CcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999865 344588887321 1 223455666655 67999999986 33 7899999
Q ss_pred EEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeec
Q 024032 201 LMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLD 247 (273)
Q Consensus 201 lLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g 247 (273)
||||||++||+. +.++++.++ +.|||++ .+||++++|++|++++.|
T Consensus 151 llDEP~~~LD~~~~~~~~~~l~~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 151 ILDEPFSGLDPVNVELLKDVIRELARA-GKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 999999999999 345555544 7899988 468999999999998653
No 144
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-37 Score=281.99 Aligned_cols=193 Identities=14% Similarity=0.128 Sum_probs=149.4
Q ss_pred CceEEEEEEEEeecCC---eeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCC----
Q 024032 65 GLNELRHKFLSYRSGD---FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSG---- 136 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~---~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~---- 136 (273)
+.++++|++++|+... ..+ |+++||+|++||++||+||||||||||+++|+|+++ ++|+|.++|.++.
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~i----l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~ 80 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKA----LNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLK 80 (289)
T ss_pred ceEEEEEEEEEeCCCCccccce----eeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccc
Confidence 4689999999995321 235 999999999999999999999999999999999999 9999999998763
Q ss_pred ------CCCccEEEEeccchhhhccCCccccccccc-------CCH----HHHHHHHHHhc----------ccCCHHHHH
Q 024032 137 ------NSSHTITMYMEEHNVMRSLQSGFCVYDSRG-------FNY----NRVHEGLEELS----------SWMSEGVHH 189 (273)
Q Consensus 137 ------~~~~~i~~v~q~~~~~~~~~~~~tv~en~~-------~~~----~~~~~~l~~~~----------~~LSgGqkq 189 (273)
..++.++|++|++... ++..|+.+|.. ... +.+.+.++.++ ..|||||||
T Consensus 81 ~~~~~~~~~~~i~~v~q~~~~~---~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~q 157 (289)
T PRK13645 81 KIKEVKRLRKEIGLVFQFPEYQ---LFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKR 157 (289)
T ss_pred ccccHHHHhccEEEEEeCcchh---hhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHH
Confidence 1345799999986421 23347877732 111 22334444433 679999999
Q ss_pred HH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhh
Q 024032 190 NQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKR 251 (273)
Q Consensus 190 ~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~ 251 (273)
|. |+ +.+|++|||||||+|||+. +.++++.++.|+|||++ .+||++++|++|++++.|++++
T Consensus 158 rv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 237 (289)
T PRK13645 158 RVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFE 237 (289)
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 86 33 7899999999999999999 33455554448899988 5689999999999999999999
Q ss_pred hccChhhHHHhCC
Q 024032 252 LFSAPGLRKCSKI 264 (273)
Q Consensus 252 l~~~~~l~~~~~~ 264 (273)
++..+.+...++.
T Consensus 238 ~~~~~~~~~~~~~ 250 (289)
T PRK13645 238 IFSNQELLTKIEI 250 (289)
T ss_pred HhcCHHHHHHcCC
Confidence 8776655444443
No 145
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=5e-38 Score=288.39 Aligned_cols=167 Identities=14% Similarity=0.189 Sum_probs=138.6
Q ss_pred CCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC----CCccEEEEeccchhhh
Q 024032 79 GDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN----SSHTITMYMEEHNVMR 153 (273)
Q Consensus 79 g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~----~~~~i~~v~q~~~~~~ 153 (273)
+++++ |+++||+|++||++||+||||||||||+|+|+|+++ ++|+|.++|.++.. .++.+++++|++.+
T Consensus 4 ~~~~~----l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~-- 77 (302)
T TIGR01188 4 GDFKA----VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASV-- 77 (302)
T ss_pred CCeeE----EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCC--
Confidence 45566 999999999999999999999999999999999999 99999999998753 35679999998775
Q ss_pred ccCCccccccccc-------CC----HHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCC
Q 024032 154 SLQSGFCVYDSRG-------FN----YNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEID 209 (273)
Q Consensus 154 ~~~~~~tv~en~~-------~~----~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~L 209 (273)
+..+|++||.. .. .+++.++++.++ .+||||||||. ++ +++|++|||||||+||
T Consensus 78 --~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gL 155 (302)
T TIGR01188 78 --DEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGL 155 (302)
T ss_pred --CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence 44558888732 12 224556677665 67999999986 33 7999999999999999
Q ss_pred CHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhcc
Q 024032 210 DLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFS 254 (273)
Q Consensus 210 D~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~ 254 (273)
||. +.++++.++ |.|||++ .+||++++|++|+++..|+++++..
T Consensus 156 D~~~~~~l~~~l~~~~~~-g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 156 DPRTRRAIWDYIRALKEE-GVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKR 213 (302)
T ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 999 345666555 8999998 5689999999999999999988753
No 146
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=1.6e-37 Score=271.94 Aligned_cols=171 Identities=20% Similarity=0.236 Sum_probs=136.4
Q ss_pred ceEEEEEEEEeecCC--eeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCC----
Q 024032 66 LNELRHKFLSYRSGD--FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNS---- 138 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~--~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~---- 138 (273)
.++++|++++|..+. +++ |+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|+++...
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~----l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~ 76 (221)
T TIGR02211 1 LLKCENLGKRYQEGKLDTRV----LKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNE 76 (221)
T ss_pred CEEEEeeeEEccCCCcceEe----EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhH
Confidence 368999999995422 456 999999999999999999999999999999999999 999999999987531
Q ss_pred ----C-ccEEEEeccchhhhccCCcccccccccC-------C----HHHHHHHHHHhc---------ccCCHHHHHHH--
Q 024032 139 ----S-HTITMYMEEHNVMRSLQSGFCVYDSRGF-------N----YNRVHEGLEELS---------SWMSEGVHHNQ-- 191 (273)
Q Consensus 139 ----~-~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~----~~~~~~~l~~~~---------~~LSgGqkq~~-- 191 (273)
+ +.++|++|++.+ +...|++||..+ . .+.+.++++.++ ..||||||||.
T Consensus 77 ~~~~~~~~i~~v~q~~~~----~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~l 152 (221)
T TIGR02211 77 RAKLRNKKLGFIYQFHHL----LPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAI 152 (221)
T ss_pred HHHHHHhcEEEEeccccc----CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHH
Confidence 2 569999998765 334588887421 1 123455666555 67999999987
Q ss_pred -Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeEe
Q 024032 192 -RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKAGDSK 244 (273)
Q Consensus 192 -r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i~ 244 (273)
|+ +.+|++|||||||++||+. +.++++.++.+.|||++ ..+|++++|++|+++
T Consensus 153 aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 153 ARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 33 7899999999999999999 33555554447899988 347999999999975
No 147
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-37 Score=277.04 Aligned_cols=184 Identities=16% Similarity=0.254 Sum_probs=145.7
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc------CccEEEECCeeCCC
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSGN 137 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~------~~G~I~i~g~~i~~ 137 (273)
+..++++|++++|. ++.+ |+++||+|++||+++|+||||||||||+++|+|++. ++|+|.++|+++..
T Consensus 4 ~~~l~~~~l~~~~~--~~~i----l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 77 (253)
T PRK14242 4 PPKMEARGLSFFYG--DFQA----LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYD 77 (253)
T ss_pred CcEEEEeeeEEEEC--Ceee----ecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccc
Confidence 34799999999994 4556 999999999999999999999999999999999862 68999999998742
Q ss_pred -------CCccEEEEeccchhhhccCCcccccccccC--------C----HHHHHHHHHHhc-------------ccCCH
Q 024032 138 -------SSHTITMYMEEHNVMRSLQSGFCVYDSRGF--------N----YNRVHEGLEELS-------------SWMSE 185 (273)
Q Consensus 138 -------~~~~i~~v~q~~~~~~~~~~~~tv~en~~~--------~----~~~~~~~l~~~~-------------~~LSg 185 (273)
.++.++|++|++.++ ..|+.||..+ . .+++.++++.++ ..|||
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~-----~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSg 152 (253)
T PRK14242 78 PHVDVVELRRRVGMVFQKPNPF-----PKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSG 152 (253)
T ss_pred cccCHHHHhhcEEEEecCCCCC-----cCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCH
Confidence 246799999987643 2478887321 1 123444444432 56999
Q ss_pred HHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeec
Q 024032 186 GVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLD 247 (273)
Q Consensus 186 Gqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g 247 (273)
|||||. |+ +.+|++|||||||++||+. +.++++. + +.|||++ .+||++++|++|++++.|
T Consensus 153 Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g 230 (253)
T PRK14242 153 GQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK-A-RYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVG 230 (253)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-CCeEEEEEecHHHHHHhCCEEEEEECCEEEEeC
Confidence 999987 33 7899999999999999999 3355553 3 7898888 568999999999999999
Q ss_pred ChhhhccChhhHH
Q 024032 248 ATKRLFSAPGLRK 260 (273)
Q Consensus 248 ~~~~l~~~~~l~~ 260 (273)
+++++++.+....
T Consensus 231 ~~~~~~~~~~~~~ 243 (253)
T PRK14242 231 PTEQIFTRPREKQ 243 (253)
T ss_pred CHHHHHcCCCchH
Confidence 9999987655443
No 148
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=2.1e-37 Score=307.25 Aligned_cols=216 Identities=14% Similarity=0.175 Sum_probs=169.0
Q ss_pred hhhhhhhccchhhhhhhhHHHHHHHhchhhh--------ccCCCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcE
Q 024032 29 FDECVKLKLDLPNVSTLTPRLRVLREMERLA--------LIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVIT 100 (273)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~--------~~~~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~ 100 (273)
+..+......+..+..+.+|+.++++.++.. .....+.++++|++|+|+. ++++ |+++||++++|++
T Consensus 289 ~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~-~~~~----l~~i~~~i~~G~~ 363 (585)
T TIGR01192 289 LDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPADAPELPNVKGAVEFRHITFEFAN-SSQG----VFDVSFEAKAGQT 363 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCccCCCCCCCCCeEEEEEEEEECCC-CCcc----ccceeEEEcCCCE
Confidence 3445555566677888889988887654221 0111246999999999963 2456 9999999999999
Q ss_pred EEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCccccccccc-----CCH
Q 024032 101 ILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSRG-----FNY 169 (273)
Q Consensus 101 ~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~~-----~~~ 169 (273)
+||+||||||||||+++|+|+++ ++|+|.++|.++.+ +++.+++++|++.+ +..|++||.. .+.
T Consensus 364 ~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l-----f~~ti~~Ni~~~~~~~~~ 438 (585)
T TIGR01192 364 VAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGL-----FNRSIRENIRLGREGATD 438 (585)
T ss_pred EEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCcc-----CcccHHHHHhcCCCCCCH
Confidence 99999999999999999999999 99999999998764 56789999999874 4468999842 345
Q ss_pred HHHHHHHHHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHH
Q 024032 170 NRVHEGLEELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVL 219 (273)
Q Consensus 170 ~~~~~~l~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~ 219 (273)
+++.++++.++ ..||||||||. |+ +++|++|||||||++||+. +.+.++.
T Consensus 439 ~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~ 518 (585)
T TIGR01192 439 EEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR 518 (585)
T ss_pred HHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh
Confidence 55555544332 56999999986 44 8999999999999999999 2233332
Q ss_pred hcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 220 RRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 220 ~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
+ ++|+|++ ..||+|++|++|++++.|+++++.++.
T Consensus 519 -~-~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 560 (585)
T TIGR01192 519 -K-NRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQKD 560 (585)
T ss_pred -C-CCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHHCC
Confidence 2 7899888 458999999999999999999997543
No 149
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=1e-37 Score=271.82 Aligned_cols=167 Identities=21% Similarity=0.297 Sum_probs=134.8
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-------
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------- 137 (273)
+++++|++++|. +++.+ |+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 1 ~l~~~~l~~~~~-~~~~i----l~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 75 (214)
T TIGR02673 1 MIEFHNVSKAYP-GGVAA----LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLP 75 (214)
T ss_pred CEEEEeeeEEeC-CCcee----ecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHH
Confidence 378999999995 23456 999999999999999999999999999999999999 99999999998753
Q ss_pred -CCccEEEEeccchhhhccCCccccccccc-------CC----HHHHHHHHHHhc---------ccCCHHHHHHH---Hh
Q 024032 138 -SSHTITMYMEEHNVMRSLQSGFCVYDSRG-------FN----YNRVHEGLEELS---------SWMSEGVHHNQ---RC 193 (273)
Q Consensus 138 -~~~~i~~v~q~~~~~~~~~~~~tv~en~~-------~~----~~~~~~~l~~~~---------~~LSgGqkq~~---r~ 193 (273)
.++.+++++|++.++ ...|+.+|.. .. .+++.++++.++ ..|||||+||. |+
T Consensus 76 ~~~~~i~~~~q~~~~~----~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~a 151 (214)
T TIGR02673 76 LLRRRIGVVFQDFRLL----PDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARA 151 (214)
T ss_pred HHHhheEEEecChhhc----cCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 245799999988753 3458888732 11 234455666655 67999999986 33
Q ss_pred -cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCe
Q 024032 194 -LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGD 242 (273)
Q Consensus 194 -l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~ 242 (273)
+.+|++|||||||++||+. +.++++.++ |.|||++ .+||++++|++|+
T Consensus 152 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 152 IVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKR-GTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 7899999999999999999 335555544 8899988 4689999999985
No 150
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-37 Score=276.71 Aligned_cols=179 Identities=21% Similarity=0.261 Sum_probs=144.2
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-C-----ccEEEECCeeCC--C
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R-----SGLVLFAQTSSG--N 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~-----~G~I~i~g~~i~--~ 137 (273)
.++++|++++|. ++++ |+++||+|++||+++|+||||||||||+++|+|+++ + +|+|.++|+++. .
T Consensus 4 ~l~~~~l~~~~~--~~~~----l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~ 77 (253)
T PRK14267 4 AIETVNLRVYYG--SNHV----IKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPD 77 (253)
T ss_pred eEEEEeEEEEeC--Ceee----eecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccc
Confidence 689999999984 3556 999999999999999999999999999999999987 4 999999999874 1
Q ss_pred -----CCccEEEEeccchhhhccCCcccccccccC---------CH----HHHHHHHHHhc-------------ccCCHH
Q 024032 138 -----SSHTITMYMEEHNVMRSLQSGFCVYDSRGF---------NY----NRVHEGLEELS-------------SWMSEG 186 (273)
Q Consensus 138 -----~~~~i~~v~q~~~~~~~~~~~~tv~en~~~---------~~----~~~~~~l~~~~-------------~~LSgG 186 (273)
.++.+++++|++.++ ...|+.+|..+ .. +.+.++++.++ ..||||
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~----~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G 153 (253)
T PRK14267 78 VDPIEVRREVGMVFQYPNPF----PHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGG 153 (253)
T ss_pred cChHHHhhceeEEecCCccC----CCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHH
Confidence 346799999997753 34588887321 11 23444555432 569999
Q ss_pred HHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecC
Q 024032 187 VHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDA 248 (273)
Q Consensus 187 qkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~ 248 (273)
||||. |+ +.+|++|||||||++||+. +.++++.+ +.|||++ .+||++++|++|++++.|+
T Consensus 154 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~ 231 (253)
T PRK14267 154 QRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK--EYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGP 231 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh--CCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCC
Confidence 99986 33 7899999999999999999 33455543 6888888 4689999999999999999
Q ss_pred hhhhccCh
Q 024032 249 TKRLFSAP 256 (273)
Q Consensus 249 ~~~l~~~~ 256 (273)
+++++..+
T Consensus 232 ~~~~~~~~ 239 (253)
T PRK14267 232 TRKVFENP 239 (253)
T ss_pred HHHHHhCC
Confidence 99987553
No 151
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-37 Score=279.74 Aligned_cols=183 Identities=16% Similarity=0.141 Sum_probs=145.0
Q ss_pred eEEEEEEEEeecCC---eeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----
Q 024032 67 NELRHKFLSYRSGD---FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN----- 137 (273)
Q Consensus 67 i~~~~v~~~y~~g~---~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~----- 137 (273)
++++|++++|..+. +++ |+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 3 l~~~~l~~~~~~~~~~~~~~----l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~ 78 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRA----LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNK 78 (280)
T ss_pred EEEEEEEEEcCCCCccccce----eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccc
Confidence 78999999996321 345 999999999999999999999999999999999999 99999999998742
Q ss_pred ----CCccEEEEeccchhhhccCCccccccccc-------CCHH----HHHHHHHHhc----------ccCCHHHHHHH-
Q 024032 138 ----SSHTITMYMEEHNVMRSLQSGFCVYDSRG-------FNYN----RVHEGLEELS----------SWMSEGVHHNQ- 191 (273)
Q Consensus 138 ----~~~~i~~v~q~~~~~~~~~~~~tv~en~~-------~~~~----~~~~~l~~~~----------~~LSgGqkq~~- 191 (273)
.++.++|++|++... ++..|+++|.. ...+ .+.++++.++ .+||||||||.
T Consensus 79 ~~~~~~~~i~~~~q~~~~~---~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ 155 (280)
T PRK13649 79 DIKQIRKKVGLVFQFPESQ---LFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVA 155 (280)
T ss_pred CHHHHHhheEEEeeChhhh---hccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHH
Confidence 245699999986311 23458888732 1222 2344455543 57999999986
Q ss_pred --Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhcc
Q 024032 192 --RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFS 254 (273)
Q Consensus 192 --r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~ 254 (273)
|+ +.+|++|||||||++||+. +.++++.++ |.|||++ .+||++++|++|+++..|++++++.
T Consensus 156 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 234 (280)
T PRK13649 156 IAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQS-GMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQ 234 (280)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 33 7899999999999999999 335556554 8899998 4689999999999999999998876
Q ss_pred Chh
Q 024032 255 APG 257 (273)
Q Consensus 255 ~~~ 257 (273)
...
T Consensus 235 ~~~ 237 (280)
T PRK13649 235 DVD 237 (280)
T ss_pred CHH
Confidence 543
No 152
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=5e-37 Score=269.45 Aligned_cols=182 Identities=16% Similarity=0.208 Sum_probs=147.0
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCC-CccEEE
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNS-SHTITM 144 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~-~~~i~~ 144 (273)
++++|++++|. ++.+ |+++||++++||+++|+||||||||||+++|+|+++ ++|+|.++|.++... ++.+++
T Consensus 1 l~l~~v~~~~~--~~~~----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~ 74 (223)
T TIGR03740 1 LETKNLSKRFG--KQTA----VNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGS 74 (223)
T ss_pred CEEEeEEEEEC--CEEE----EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEE
Confidence 47899999884 4567 999999999999999999999999999999999999 999999999887532 357899
Q ss_pred EeccchhhhccCCcccccccc-------cCCHHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCCEEEEcC
Q 024032 145 YMEEHNVMRSLQSGFCVYDSR-------GFNYNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDDCALMKN 204 (273)
Q Consensus 145 v~q~~~~~~~~~~~~tv~en~-------~~~~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~iLlLDE 204 (273)
++|++.. +...|+++|. +.....+.++++.++ ..||+||+||. |+ +.+|++|||||
T Consensus 75 ~~q~~~~----~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDE 150 (223)
T TIGR03740 75 LIESPPL----YENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDE 150 (223)
T ss_pred EcCCCCc----cccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECC
Confidence 9998765 3445888873 223456667777765 67999999986 33 78999999999
Q ss_pred cCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChhhHHHh
Q 024032 205 DAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPGLRKCS 262 (273)
Q Consensus 205 Pts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~l~~~~ 262 (273)
||++||+. +.++++.++ |.|||++ .+||++++|++|+++..|++.+ .+.+++.|
T Consensus 151 P~~~LD~~~~~~l~~~L~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~---~~~~~~~~ 218 (223)
T TIGR03740 151 PTNGLDPIGIQELRELIRSFPEQ-GITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK---SENLEKLF 218 (223)
T ss_pred CccCCCHHHHHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh---cccHHHHH
Confidence 99999999 345555544 8898888 5689999999999999998764 33445544
No 153
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-37 Score=282.11 Aligned_cols=189 Identities=19% Similarity=0.202 Sum_probs=151.5
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc------CccEEEECCeeCCC--
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSGN-- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~------~~G~I~i~g~~i~~-- 137 (273)
+++++|++.+|...+..+ .+++||||+|++||++||||.|||||||+.+.|.|+++ .+|+|.|+|+++..
T Consensus 1 lL~v~nL~v~f~~~~g~v--~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~ 78 (316)
T COG0444 1 LLEVKNLSVSFPTDAGVV--KAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLS 78 (316)
T ss_pred CceEeeeEEEEecCCccE--EEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCC
Confidence 368999999998654444 45999999999999999999999999999999999985 36899999997742
Q ss_pred -------CCccEEEEeccchhhhccCCccccccc--------ccC-C----HHHHHHHHHHhc------------ccCCH
Q 024032 138 -------SSHTITMYMEEHNVMRSLQSGFCVYDS--------RGF-N----YNRVHEGLEELS------------SWMSE 185 (273)
Q Consensus 138 -------~~~~i~~v~q~~~~~~~~~~~~tv~en--------~~~-~----~~~~~~~l~~~~------------~~LSg 185 (273)
..+.|+++||++..- +.+-+||.+- ... . .+++.+.++.++ .+|||
T Consensus 79 ~~~~~~iRG~~I~mIfQ~p~~s--LnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSG 156 (316)
T COG0444 79 EKELRKIRGKEIAMIFQDPMTS--LNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSG 156 (316)
T ss_pred HHHHHhhcCceEEEEEcCchhh--cCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCC
Confidence 236799999997632 1222344321 111 1 234556666666 88999
Q ss_pred HHHHHHH----hcCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeec
Q 024032 186 GVHHNQR----CLRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLD 247 (273)
Q Consensus 186 Gqkq~~r----~l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g 247 (273)
||+||+. ++.+|++||.||||++||.. ++++++.++.|.|+|+| .+||||+||..|+|++.|
T Consensus 157 GMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~g 236 (316)
T COG0444 157 GMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEG 236 (316)
T ss_pred cHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEeC
Confidence 9999872 27899999999999999999 45778888789999999 678999999999999999
Q ss_pred ChhhhccChhh
Q 024032 248 ATKRLFSAPGL 258 (273)
Q Consensus 248 ~~~~l~~~~~l 258 (273)
++++++.+|..
T Consensus 237 ~~~~i~~~P~H 247 (316)
T COG0444 237 PVEEIFKNPKH 247 (316)
T ss_pred CHHHHhcCCCC
Confidence 99999987653
No 154
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=2.3e-37 Score=273.78 Aligned_cols=179 Identities=17% Similarity=0.235 Sum_probs=142.6
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCc
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSH 140 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~ 140 (273)
++++|+++.|..+++++ |+++||++++||+++|+||||||||||+++|+|+++ ++|+|.++|.++.. .++
T Consensus 1 i~~~~l~~~~~~~~~~~----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (237)
T cd03252 1 ITFEHVRFRYKPDGPVI----LDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRR 76 (237)
T ss_pred CEEEEEEEecCCCCccc----eeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhh
Confidence 47899999996544556 999999999999999999999999999999999999 99999999988742 356
Q ss_pred cEEEEeccchhhhccCCcccccccccC-----CHHHHHH---------HHHHh-----------cccCCHHHHHHH---H
Q 024032 141 TITMYMEEHNVMRSLQSGFCVYDSRGF-----NYNRVHE---------GLEEL-----------SSWMSEGVHHNQ---R 192 (273)
Q Consensus 141 ~i~~v~q~~~~~~~~~~~~tv~en~~~-----~~~~~~~---------~l~~~-----------~~~LSgGqkq~~---r 192 (273)
.+++++|++.+ +..|+.+|..+ ....+.+ .++.+ ..+||||||||. |
T Consensus 77 ~i~~~~q~~~~-----~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~lar 151 (237)
T cd03252 77 QVGVVLQENVL-----FNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIAR 151 (237)
T ss_pred cEEEEcCCchh-----ccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHH
Confidence 79999998764 23588887432 2222222 22222 168999999987 3
Q ss_pred h-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 193 C-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 193 ~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
+ +.+|++|||||||++||+. +.++++. + |.|||++ ..||++++|++|+++..|++++++...
T Consensus 152 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~ 227 (237)
T cd03252 152 ALIHNPRILIFDEATSALDYESEHAIMRNMHDIC-A-GRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAEN 227 (237)
T ss_pred HHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhcc
Confidence 3 7899999999999999999 3345554 3 8899888 448999999999999999999987654
No 155
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.6e-38 Score=278.16 Aligned_cols=178 Identities=16% Similarity=0.227 Sum_probs=151.4
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-CCccEE
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-SSHTIT 143 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-~~~~i~ 143 (273)
.+++++|+++| |++.+ ++|+||++++|+++|++|||||||||++++|.|++. ++|.|.++|.+++. .+.+||
T Consensus 2 ~L~ie~vtK~F--g~k~a----v~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIG 75 (300)
T COG4152 2 ALEIEGVTKSF--GDKKA----VDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIG 75 (300)
T ss_pred ceEEecchhcc--Cceee----ecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcc
Confidence 47899999998 66777 999999999999999999999999999999999999 99999999999874 667899
Q ss_pred EEeccchhhhccCCccccccc-------ccCCHHH----HHHHHHHhc---------ccCCHHHHHHHH----hcCCCCE
Q 024032 144 MYMEEHNVMRSLQSGFCVYDS-------RGFNYNR----VHEGLEELS---------SWMSEGVHHNQR----CLRSDDC 199 (273)
Q Consensus 144 ~v~q~~~~~~~~~~~~tv~en-------~~~~~~~----~~~~l~~~~---------~~LSgGqkq~~r----~l~~p~i 199 (273)
|.|.+..+++ .+||.|. .+++.++ +..+++++. .+||.|++|+.. ++++|++
T Consensus 76 yLPEERGLy~----k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeL 151 (300)
T COG4152 76 YLPEERGLYP----KMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPEL 151 (300)
T ss_pred cChhhhccCc----cCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCE
Confidence 9999888754 4588885 3455544 445666655 789999999863 3899999
Q ss_pred EEEcCcCCCCCHH--HH----HHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhcc
Q 024032 200 ALMKNDAEIDDLK--SS----PKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFS 254 (273)
Q Consensus 200 LlLDEPts~LD~~--~~----l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~ 254 (273)
+|||||+|||||. ++ +.+++.+ |.|||++ .+||++++|++|+.|.+|+.+++.+
T Consensus 152 lILDEPFSGLDPVN~elLk~~I~~lk~~-GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~ 219 (300)
T COG4152 152 LILDEPFSGLDPVNVELLKDAIFELKEE-GATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRR 219 (300)
T ss_pred EEecCCccCCChhhHHHHHHHHHHHHhc-CCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHH
Confidence 9999999999999 33 4556655 9999999 6799999999999999999988753
No 156
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=2.3e-37 Score=279.29 Aligned_cols=186 Identities=15% Similarity=0.230 Sum_probs=145.5
Q ss_pred CceEEEEEEEEeecC-------CeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCC
Q 024032 65 GLNELRHKFLSYRSG-------DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSG 136 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g-------~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~ 136 (273)
.+++++|++++|.+. +.++ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++.
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~~~~~----l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~ 78 (267)
T PRK15112 3 TLLEVRNLSKTFRYRTGWFRRQTVEA----VKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLH 78 (267)
T ss_pred ceEEEeceEEEecCCCCcccccccce----eeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECC
Confidence 368999999999531 2346 999999999999999999999999999999999999 9999999999875
Q ss_pred C-----CCccEEEEeccchhhhccCCcccccccc--------cCC----HHHHHHHHHHhc----------ccCCHHHHH
Q 024032 137 N-----SSHTITMYMEEHNVMRSLQSGFCVYDSR--------GFN----YNRVHEGLEELS----------SWMSEGVHH 189 (273)
Q Consensus 137 ~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~--------~~~----~~~~~~~l~~~~----------~~LSgGqkq 189 (273)
. .++.+++++|++..+ +....|+.++. ... .+.+.++++.++ .+|||||+|
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~q 156 (267)
T PRK15112 79 FGDYSYRSQRIRMIFQDPSTS--LNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQ 156 (267)
T ss_pred CCchhhHhccEEEEecCchhh--cCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHH
Confidence 2 235699999987421 12223444431 111 234555666654 569999999
Q ss_pred HH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhh
Q 024032 190 NQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKR 251 (273)
Q Consensus 190 ~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~ 251 (273)
|. ++ +.+|++|||||||++||+. +.+.++.++.|.|||++ .+||++++|++|+++..|++++
T Consensus 157 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 236 (267)
T PRK15112 157 RLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTAD 236 (267)
T ss_pred HHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHH
Confidence 86 33 7899999999999999999 33555554448899888 4689999999999999999999
Q ss_pred hccCh
Q 024032 252 LFSAP 256 (273)
Q Consensus 252 l~~~~ 256 (273)
+.+.+
T Consensus 237 ~~~~~ 241 (267)
T PRK15112 237 VLASP 241 (267)
T ss_pred HhcCC
Confidence 87653
No 157
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-37 Score=276.92 Aligned_cols=183 Identities=17% Similarity=0.260 Sum_probs=146.4
Q ss_pred CCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc------CccEEEECCeeCC
Q 024032 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSG 136 (273)
Q Consensus 63 ~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~------~~G~I~i~g~~i~ 136 (273)
+...++++|++++|+ +.++ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++.
T Consensus 10 ~~~~l~~~~l~~~~~--~~~i----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~ 83 (260)
T PRK10744 10 APSKIQVRNLNFYYG--KFHA----LKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENIL 83 (260)
T ss_pred CCceEEEEEEEEEeC--CeEE----eeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcc
Confidence 456899999999994 4566 999999999999999999999999999999999974 6899999998874
Q ss_pred C-------CCccEEEEeccchhhhccCCcccccccccC--------CH----HHHHHHHHHhc-------------ccCC
Q 024032 137 N-------SSHTITMYMEEHNVMRSLQSGFCVYDSRGF--------NY----NRVHEGLEELS-------------SWMS 184 (273)
Q Consensus 137 ~-------~~~~i~~v~q~~~~~~~~~~~~tv~en~~~--------~~----~~~~~~l~~~~-------------~~LS 184 (273)
. .++.++|++|++.++ ..|+++|..+ +. +++.++++.++ .+||
T Consensus 84 ~~~~~~~~~~~~i~~~~q~~~~~-----~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS 158 (260)
T PRK10744 84 TPKQDIALLRAKVGMVFQKPTPF-----PMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLS 158 (260)
T ss_pred ccccchHHHhcceEEEecCCccC-----cCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCC
Confidence 1 356799999997643 2588887321 11 23445555442 5699
Q ss_pred HHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeee
Q 024032 185 EGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPL 246 (273)
Q Consensus 185 gGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~ 246 (273)
|||+||. |+ +.+|++|||||||++||+. +.++++. + +.|||++ .+||++++|++|++++.
T Consensus 159 ~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 236 (260)
T PRK10744 159 GGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-Q-DYTVVIVTHNMQQAARCSDYTAFMYLGELIEF 236 (260)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999986 33 7899999999999999999 3345554 3 6788888 46899999999999999
Q ss_pred cChhhhccChhh
Q 024032 247 DATKRLFSAPGL 258 (273)
Q Consensus 247 g~~~~l~~~~~l 258 (273)
|++++++..+..
T Consensus 237 g~~~~~~~~~~~ 248 (260)
T PRK10744 237 GNTDTIFTKPAK 248 (260)
T ss_pred CCHHHHHhCCCc
Confidence 999998865443
No 158
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-37 Score=274.94 Aligned_cols=177 Identities=19% Similarity=0.189 Sum_probs=143.7
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCC--------
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSG-------- 136 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~-------- 136 (273)
.++++|+++.|. ++.+ |+++||++++||+++|+||||||||||+++|+|+++ ++|+|.++|+++.
T Consensus 2 ~l~~~~l~~~~~--~~~i----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 75 (242)
T PRK11124 2 SIQLNGINCFYG--AHQA----LFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDK 75 (242)
T ss_pred EEEEEeeEEEEC--Ceee----EeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchh
Confidence 478999999984 4566 999999999999999999999999999999999999 9999999999762
Q ss_pred ---CCCccEEEEeccchhhhccCCccccccccc--------CC----HHHHHHHHHHhc---------ccCCHHHHHHH-
Q 024032 137 ---NSSHTITMYMEEHNVMRSLQSGFCVYDSRG--------FN----YNRVHEGLEELS---------SWMSEGVHHNQ- 191 (273)
Q Consensus 137 ---~~~~~i~~v~q~~~~~~~~~~~~tv~en~~--------~~----~~~~~~~l~~~~---------~~LSgGqkq~~- 191 (273)
..++.++|++|++.+ +..+|+.||.. .. .+.+.+.++.++ ..||||||||.
T Consensus 76 ~~~~~~~~i~~~~q~~~~----~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~ 151 (242)
T PRK11124 76 AIRELRRNVGMVFQQYNL----WPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVA 151 (242)
T ss_pred hHHHHHhheEEEecCccc----cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHH
Confidence 124579999998875 34458888742 11 123445555554 67999999986
Q ss_pred --Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhc
Q 024032 192 --RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLF 253 (273)
Q Consensus 192 --r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~ 253 (273)
|+ +.+|++|||||||++||+. +.++++.++ |.|+|++ ..||++++|++|+++..|+++++.
T Consensus 152 laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 229 (242)
T PRK11124 152 IARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAET-GITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFT 229 (242)
T ss_pred HHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhc
Confidence 33 7899999999999999999 335555544 8899888 458999999999999999988864
No 159
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6e-37 Score=277.98 Aligned_cols=185 Identities=17% Similarity=0.199 Sum_probs=149.0
Q ss_pred ceEEEEEEEEeecC-CeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----C
Q 024032 66 LNELRHKFLSYRSG-DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----S 138 (273)
Q Consensus 66 ~i~~~~v~~~y~~g-~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~ 138 (273)
+++++|++++|+.. ...+ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++.. .
T Consensus 4 ~l~~~~l~~~~~~~~~~~~----l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~ 79 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQ----LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNL 79 (277)
T ss_pred eEEEEEEEEEcCCCCcCee----eeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHH
Confidence 68999999999632 2346 999999999999999999999999999999999999 99999999998753 3
Q ss_pred CccEEEEeccchhhhccCCccccccccc-------CCH----HHHHHHHHHhc---------ccCCHHHHHHH---Hh-c
Q 024032 139 SHTITMYMEEHNVMRSLQSGFCVYDSRG-------FNY----NRVHEGLEELS---------SWMSEGVHHNQ---RC-L 194 (273)
Q Consensus 139 ~~~i~~v~q~~~~~~~~~~~~tv~en~~-------~~~----~~~~~~l~~~~---------~~LSgGqkq~~---r~-l 194 (273)
++.++|++|++.. +++..|+.+|.. ... +.+.++++.++ ..|||||+||. |+ +
T Consensus 80 ~~~i~~v~q~~~~---~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~ 156 (277)
T PRK13642 80 RRKIGMVFQNPDN---QFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIA 156 (277)
T ss_pred hcceEEEEECHHH---hhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHH
Confidence 5679999999742 144458888742 122 22345555544 67999999986 33 7
Q ss_pred CCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccChh
Q 024032 195 RSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSAPG 257 (273)
Q Consensus 195 ~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~~ 257 (273)
.+|++|||||||++||+. +.++++.++.|.|||++ ..||++++|++|++++.|++++++..+.
T Consensus 157 ~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 232 (277)
T PRK13642 157 LRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFATSE 232 (277)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcCHH
Confidence 899999999999999999 34555655458999998 4589999999999999999999886544
No 160
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-37 Score=289.75 Aligned_cols=179 Identities=16% Similarity=0.259 Sum_probs=147.8
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC--------
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-------- 137 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-------- 137 (273)
+++ |++++|. ++ . + ++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 2 l~~-~l~k~~~--~~-~----~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~ 72 (352)
T PRK11144 2 LEL-NFKQQLG--DL-C----L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLP 72 (352)
T ss_pred eEE-EEEEEeC--CE-E----E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccc
Confidence 567 8888884 32 2 4 8999999999999999999999999999999999 99999999988642
Q ss_pred -CCccEEEEeccchhhhccCCcccccccccC-----CHHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCC
Q 024032 138 -SSHTITMYMEEHNVMRSLQSGFCVYDSRGF-----NYNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDD 198 (273)
Q Consensus 138 -~~~~i~~v~q~~~~~~~~~~~~tv~en~~~-----~~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~ 198 (273)
.++.++|++|++.++ +.+||++|..+ ..+++.+.++.++ .+||||||||. |+ +.+|+
T Consensus 73 ~~~~~i~~v~q~~~l~----~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~ 148 (352)
T PRK11144 73 PEKRRIGYVFQDARLF----PHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPE 148 (352)
T ss_pred hhhCCEEEEcCCcccC----CCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 356799999998764 44599998542 2345667777766 67999999987 33 78999
Q ss_pred EEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChhh
Q 024032 199 CALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPGL 258 (273)
Q Consensus 199 iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~l 258 (273)
+|||||||++||+. +.++++.++.|.|+|++ .+||++++|++|+++..|++++++.+|..
T Consensus 149 llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p~~ 222 (352)
T PRK11144 149 LLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSAM 222 (352)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCcch
Confidence 99999999999999 34556655558899888 46899999999999999999999987753
No 161
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=4.2e-37 Score=270.62 Aligned_cols=174 Identities=18% Similarity=0.174 Sum_probs=139.0
Q ss_pred CceEEEEEEEEeecCC--eeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCC---
Q 024032 65 GLNELRHKFLSYRSGD--FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNS--- 138 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~--~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~--- 138 (273)
.+++++|++++|..+. ..+ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++...
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~----l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~ 80 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSI----LTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEE 80 (228)
T ss_pred ceEEEeeeEEEccCCCcceEE----EeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHH
Confidence 4789999999996432 246 999999999999999999999999999999999999 999999999987531
Q ss_pred ------CccEEEEeccchhhhccCCcccccccccC-------C----HHHHHHHHHHhc---------ccCCHHHHHHH-
Q 024032 139 ------SHTITMYMEEHNVMRSLQSGFCVYDSRGF-------N----YNRVHEGLEELS---------SWMSEGVHHNQ- 191 (273)
Q Consensus 139 ------~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~----~~~~~~~l~~~~---------~~LSgGqkq~~- 191 (273)
++.+++++|++.+ +..+|+.||..+ . .+++.++++.++ ..|||||+||.
T Consensus 81 ~~~~~~~~~i~~~~q~~~l----~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~ 156 (228)
T PRK10584 81 ARAKLRAKHVGFVFQSFML----IPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVA 156 (228)
T ss_pred HHHHHHhheEEEEEccccc----CCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHH
Confidence 2469999998765 334588887321 1 234455566555 67999999986
Q ss_pred --Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeEeee
Q 024032 192 --RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKAGDSKPL 246 (273)
Q Consensus 192 --r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~ 246 (273)
|+ +.+|++|||||||+|||+. +.++++.++.|.|||++ ..||++++|++|++++.
T Consensus 157 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 157 LARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 33 7899999999999999999 33555555447899988 44899999999998753
No 162
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=9.1e-38 Score=272.14 Aligned_cols=169 Identities=18% Similarity=0.230 Sum_probs=134.3
Q ss_pred EEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEEEEe
Q 024032 68 ELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYM 146 (273)
Q Consensus 68 ~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~~v~ 146 (273)
+++|++++|+ ++++ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++...++.++|++
T Consensus 1 ~~~~l~~~~~--~~~~----l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~ 74 (213)
T cd03235 1 EVEDLTVSYG--GHPV----LEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVP 74 (213)
T ss_pred CcccceeEEC--CEEe----eecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEec
Confidence 3678999884 4566 999999999999999999999999999999999998 99999999988765567799999
Q ss_pred ccchhhhccCCcccccccccC---------------CHHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCC
Q 024032 147 EEHNVMRSLQSGFCVYDSRGF---------------NYNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDD 198 (273)
Q Consensus 147 q~~~~~~~~~~~~tv~en~~~---------------~~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~ 198 (273)
|++.... .+..|++||..+ ..+++.++++.++ .+||||||||. |+ +.+|+
T Consensus 75 q~~~~~~--~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ 152 (213)
T cd03235 75 QRRSIDR--DFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPD 152 (213)
T ss_pred ccccccc--CCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 9876421 234588887321 1223555666654 68999999986 33 78999
Q ss_pred EEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeee
Q 024032 199 CALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPL 246 (273)
Q Consensus 199 iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~ 246 (273)
+|||||||++||+. +.++++.++ |.|||++ .+||++++|++| +++.
T Consensus 153 llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~ 212 (213)
T cd03235 153 LLLLDEPFAGVDPKTQEDIYELLRELRRE-GMTILVVTHDLGLVLEYFDRVLLLNRT-VVAS 212 (213)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEEEEEcCc-Eeec
Confidence 99999999999999 345555544 8899888 568999999886 5544
No 163
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=4.5e-37 Score=273.84 Aligned_cols=178 Identities=20% Similarity=0.301 Sum_probs=142.7
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-C-----ccEEEECCeeCCC--
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R-----SGLVLFAQTSSGN-- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~-----~G~I~i~g~~i~~-- 137 (273)
.++++|++++|. +..+ |+++||+|++||+++|+||||||||||+++|+|+++ + +|+|.++|+++..
T Consensus 1 ~l~~~~l~~~~~--~~~~----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~ 74 (247)
T TIGR00972 1 AIEIENLNLFYG--EKEA----LKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKK 74 (247)
T ss_pred CEEEEEEEEEEC--Ceee----ecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccc
Confidence 368999999984 3456 999999999999999999999999999999999998 7 9999999998752
Q ss_pred -----CCccEEEEeccchhhhccCCcccccccccC--------CH----HHHHHHHHHhc-------------ccCCHHH
Q 024032 138 -----SSHTITMYMEEHNVMRSLQSGFCVYDSRGF--------NY----NRVHEGLEELS-------------SWMSEGV 187 (273)
Q Consensus 138 -----~~~~i~~v~q~~~~~~~~~~~~tv~en~~~--------~~----~~~~~~l~~~~-------------~~LSgGq 187 (273)
.++.++|++|++.++ . .|+++|..+ .. +.+.++++.++ ..|||||
T Consensus 75 ~~~~~~~~~i~~v~q~~~~~----~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~ 149 (247)
T TIGR00972 75 IDVVELRRRVGMVFQKPNPF----P-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQ 149 (247)
T ss_pred cchHHHHhheEEEecCcccC----C-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHH
Confidence 246799999987643 2 588887321 11 22344444432 5799999
Q ss_pred HHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecCh
Q 024032 188 HHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDAT 249 (273)
Q Consensus 188 kq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~ 249 (273)
|||. |+ +.+|++|||||||++||+. +.++++.+ +.|||++ .+||++++|++|+++..|++
T Consensus 150 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~ 227 (247)
T TIGR00972 150 QQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK--KYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPT 227 (247)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9986 33 7899999999999999999 33555544 4788888 56899999999999999999
Q ss_pred hhhccCh
Q 024032 250 KRLFSAP 256 (273)
Q Consensus 250 ~~l~~~~ 256 (273)
++++..+
T Consensus 228 ~~~~~~~ 234 (247)
T TIGR00972 228 EQIFTNP 234 (247)
T ss_pred HHHHhCC
Confidence 9987654
No 164
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=3.1e-37 Score=270.62 Aligned_cols=169 Identities=20% Similarity=0.242 Sum_probs=136.6
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC--------
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-------- 137 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-------- 137 (273)
++++|+++.|. +++.+ |+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 2 l~~~~l~~~~~-~~~~~----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~ 76 (222)
T PRK10908 2 IRFEHVSKAYL-GGRQA----LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPF 76 (222)
T ss_pred EEEEeeEEEec-CCCeE----EeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHH
Confidence 78999999994 23456 999999999999999999999999999999999999 99999999998753
Q ss_pred CCccEEEEeccchhhhccCCccccccccc-------CCHH----HHHHHHHHhc---------ccCCHHHHHHH---Hh-
Q 024032 138 SSHTITMYMEEHNVMRSLQSGFCVYDSRG-------FNYN----RVHEGLEELS---------SWMSEGVHHNQ---RC- 193 (273)
Q Consensus 138 ~~~~i~~v~q~~~~~~~~~~~~tv~en~~-------~~~~----~~~~~l~~~~---------~~LSgGqkq~~---r~- 193 (273)
.++.++|++|++.+ ++.+|+.+|.. ...+ .+.++++.++ ..||||||||. |+
T Consensus 77 ~~~~i~~~~q~~~~----~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral 152 (222)
T PRK10908 77 LRRQIGMIFQDHHL----LMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAV 152 (222)
T ss_pred HHhheEEEecCccc----cccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHH
Confidence 24678999998764 44568888732 2222 3445566654 67999999986 33
Q ss_pred cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEee
Q 024032 194 LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKP 245 (273)
Q Consensus 194 l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~ 245 (273)
+.+|++|||||||++||+. +.++++.++ +.|+|++ ..||++++|++|+++.
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 153 VNKPAVLLADEPTGNLDDALSEGILRLFEEFNRV-GVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 7899999999999999998 335555544 7898888 4589999999999864
No 165
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=2.1e-37 Score=269.64 Aligned_cols=167 Identities=21% Similarity=0.253 Sum_probs=134.4
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC--------
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-------- 137 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-------- 137 (273)
++++|+++.|+.+ +++ |+++||++++|++++|+||||||||||+++|+|+++ ++|+|.++|.++..
T Consensus 1 l~~~~l~~~~~~~-~~~----l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~ 75 (214)
T cd03292 1 IEFINVTKTYPNG-TAA----LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPY 75 (214)
T ss_pred CEEEEEEEEeCCC-cee----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHH
Confidence 4689999999532 456 999999999999999999999999999999999999 99999999998753
Q ss_pred CCccEEEEeccchhhhccCCcccccccccC-------C----HHHHHHHHHHhc---------ccCCHHHHHHH---Hh-
Q 024032 138 SSHTITMYMEEHNVMRSLQSGFCVYDSRGF-------N----YNRVHEGLEELS---------SWMSEGVHHNQ---RC- 193 (273)
Q Consensus 138 ~~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~----~~~~~~~l~~~~---------~~LSgGqkq~~---r~- 193 (273)
.++.+++++|++.+ +...|+.+|..+ . .+++.++++.++ .+|||||+||. |+
T Consensus 76 ~~~~i~~v~q~~~~----~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral 151 (214)
T cd03292 76 LRRKIGVVFQDFRL----LPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAI 151 (214)
T ss_pred HHHheEEEecCchh----ccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHH
Confidence 24579999999875 344588887321 1 123455566554 67999999986 33
Q ss_pred cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeE
Q 024032 194 LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDS 243 (273)
Q Consensus 194 l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i 243 (273)
+.+|+++||||||++||+. +.++++.++ |.|||++ .+||++++|++|++
T Consensus 152 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~-~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 152 VNSPTILIADEPTGNLDPDTTWEIMNLLKKINKA-GTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 7899999999999999999 335555544 8899888 46899999999974
No 166
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.4e-37 Score=273.14 Aligned_cols=179 Identities=21% Similarity=0.285 Sum_probs=144.8
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc------CccEEEECCeeCCC--
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSGN-- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~------~~G~I~i~g~~i~~-- 137 (273)
.++++|++++|. ++.+ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~~--~~~~----l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~ 76 (250)
T PRK14247 3 KIEIRDLKVSFG--QVEV----LDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMD 76 (250)
T ss_pred eEEEEeeEEEEC--Ceee----eecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCC
Confidence 588999999984 4556 999999999999999999999999999999999986 49999999998753
Q ss_pred ---CCccEEEEeccchhhhccCCcccccccccC---------C----HHHHHHHHHHhc-------------ccCCHHHH
Q 024032 138 ---SSHTITMYMEEHNVMRSLQSGFCVYDSRGF---------N----YNRVHEGLEELS-------------SWMSEGVH 188 (273)
Q Consensus 138 ---~~~~i~~v~q~~~~~~~~~~~~tv~en~~~---------~----~~~~~~~l~~~~-------------~~LSgGqk 188 (273)
.++.++|++|++.. ++..|+.||..+ . .+.+.++++.++ .+|||||+
T Consensus 77 ~~~~~~~i~~v~q~~~~----~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~ 152 (250)
T PRK14247 77 VIELRRRVQMVFQIPNP----IPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQ 152 (250)
T ss_pred HHHHhccEEEEeccCcc----CCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHH
Confidence 35679999999764 445688888421 1 123445555543 57999999
Q ss_pred HHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChh
Q 024032 189 HNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATK 250 (273)
Q Consensus 189 q~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~ 250 (273)
||. |+ +.+|++|||||||++||+. +.++++. + +.|+|++ .+||++++|++|++++.|+++
T Consensus 153 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 230 (250)
T PRK14247 153 QRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELK-K-DMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTR 230 (250)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHH
Confidence 987 33 7899999999999999999 3345553 3 7888888 468999999999999999999
Q ss_pred hhccCh
Q 024032 251 RLFSAP 256 (273)
Q Consensus 251 ~l~~~~ 256 (273)
++++.+
T Consensus 231 ~~~~~~ 236 (250)
T PRK14247 231 EVFTNP 236 (250)
T ss_pred HHHcCC
Confidence 987654
No 167
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.1e-37 Score=268.39 Aligned_cols=168 Identities=17% Similarity=0.188 Sum_probs=136.0
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC----CCcc
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN----SSHT 141 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~----~~~~ 141 (273)
+++++++++|. ++++ |+++||++++| +++|+||||||||||+++|+|+++ ++|+|.++|.++.. .++.
T Consensus 1 i~~~~~~~~~~--~~~~----l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 73 (211)
T cd03264 1 LQLENLTKRYG--KKRA----LDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRR 73 (211)
T ss_pred CEEEEEEEEEC--CEEE----EcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhh
Confidence 47899999984 4567 99999999999 999999999999999999999999 99999999988753 3567
Q ss_pred EEEEeccchhhhccCCcccccccccC-------C----HHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCC
Q 024032 142 ITMYMEEHNVMRSLQSGFCVYDSRGF-------N----YNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSD 197 (273)
Q Consensus 142 i~~v~q~~~~~~~~~~~~tv~en~~~-------~----~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p 197 (273)
+++++|++.+ +..+|+.||..+ . .+.+.++++.++ .+||||||||. |+ +.+|
T Consensus 74 i~~~~q~~~~----~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 149 (211)
T cd03264 74 IGYLPQEFGV----YPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDP 149 (211)
T ss_pred eEEecCCCcc----cccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCC
Confidence 9999999875 334588887321 1 223455666654 67999999987 33 7999
Q ss_pred CEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeec
Q 024032 198 DCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLD 247 (273)
Q Consensus 198 ~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g 247 (273)
++|||||||++||+. +.++++.+ +.|||++ .+||++++|++|++++.|
T Consensus 150 ~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 150 SILIVDEPTAGLDPEERIRFRNLLSELGE--DRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999 33555544 5888888 468999999999998754
No 168
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=6.8e-37 Score=274.49 Aligned_cols=184 Identities=18% Similarity=0.171 Sum_probs=144.0
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCee-----CCC-
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTS-----SGN- 137 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~-----i~~- 137 (273)
..++++|++++|. ++.+ |+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|++ +..
T Consensus 5 ~~l~~~~l~~~~~--~~~i----l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~ 78 (258)
T PRK11701 5 PLLSVRGLTKLYG--PRKG----CRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYAL 78 (258)
T ss_pred ceEEEeeeEEEcC--Ccee----eeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccC
Confidence 4689999999984 3556 999999999999999999999999999999999999 99999999987 543
Q ss_pred --------CCccEEEEeccchhhhccCCccccccccc--------CC----HHHHHHHHHHhc----------ccCCHHH
Q 024032 138 --------SSHTITMYMEEHNVMRSLQSGFCVYDSRG--------FN----YNRVHEGLEELS----------SWMSEGV 187 (273)
Q Consensus 138 --------~~~~i~~v~q~~~~~~~~~~~~tv~en~~--------~~----~~~~~~~l~~~~----------~~LSgGq 187 (273)
.++.++|++|++... +....|+.+|.. .. .+.+.++++.++ .+|||||
T Consensus 79 ~~~~~~~~~~~~i~~v~q~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq 156 (258)
T PRK11701 79 SEAERRRLLRTEWGFVHQHPRDG--LRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGM 156 (258)
T ss_pred CHHHHHHHhhcceEEEeeCcccc--cCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHH
Confidence 134699999987421 123335554421 01 223344455543 6799999
Q ss_pred HHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecCh
Q 024032 188 HHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDAT 249 (273)
Q Consensus 188 kq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~ 249 (273)
+||. |+ +.+|++|||||||++||+. +.++++.++.|.|||++ ..||++++|++|++++.|++
T Consensus 157 ~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~ 236 (258)
T PRK11701 157 QQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLT 236 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 9986 33 7899999999999999999 33455555448899888 46899999999999999999
Q ss_pred hhhccCh
Q 024032 250 KRLFSAP 256 (273)
Q Consensus 250 ~~l~~~~ 256 (273)
++++.++
T Consensus 237 ~~~~~~~ 243 (258)
T PRK11701 237 DQVLDDP 243 (258)
T ss_pred HHHhcCC
Confidence 9987654
No 169
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.2e-38 Score=282.97 Aligned_cols=167 Identities=20% Similarity=0.327 Sum_probs=145.1
Q ss_pred ceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC---------CCccEEEEeccchhhhccC
Q 024032 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---------SSHTITMYMEEHNVMRSLQ 156 (273)
Q Consensus 87 ~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---------~~~~i~~v~q~~~~~~~~~ 156 (273)
.++++||+|+.|||+.|+|-||||||||+++|++|++ ++|+|+++|.++.. .++++++|||+..++|+.
T Consensus 43 Gv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhr- 121 (386)
T COG4175 43 GVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHR- 121 (386)
T ss_pred eeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccch-
Confidence 5899999999999999999999999999999999999 99999999999863 457899999999986665
Q ss_pred Cccccccccc-------CC----HHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH
Q 024032 157 SGFCVYDSRG-------FN----YNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK 212 (273)
Q Consensus 157 ~~~tv~en~~-------~~----~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~ 212 (273)
||.+|.. .+ .+++.++++.++ .+||||||||+ |+ +.+|+|||||||+|+|||-
T Consensus 122 ---tVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPL 198 (386)
T COG4175 122 ---TVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPL 198 (386)
T ss_pred ---hHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChH
Confidence 9999943 23 345667777777 78999999987 55 7899999999999999998
Q ss_pred ------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChh
Q 024032 213 ------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPG 257 (273)
Q Consensus 213 ------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~ 257 (273)
..+.++.++..+||++| ++.|||.+|++|+|+..|+|+|++.+|.
T Consensus 199 IR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ~Gtp~eIl~~PA 257 (386)
T COG4175 199 IRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLNPA 257 (386)
T ss_pred HHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeEEEeCCHHHHHcCcc
Confidence 34556667778999999 5679999999999999999999997764
No 170
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.5e-37 Score=272.48 Aligned_cols=184 Identities=18% Similarity=0.270 Sum_probs=146.6
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc------CccEEEECCeeCCC
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSGN 137 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~------~~G~I~i~g~~i~~ 137 (273)
.+.++++|++++|. ++.+ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 2 ~~~l~~~nl~~~~~--~~~~----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~ 75 (252)
T PRK14256 2 NNKVKLEQLNVHFG--KNHA----VKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYD 75 (252)
T ss_pred CcEEEEEEEEEEeC--CeeE----EecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEccc
Confidence 35689999999995 4556 999999999999999999999999999999999974 48999999998742
Q ss_pred -------CCccEEEEeccchhhhccCCcccccccccC--------CH----HHHHHHHHHhc-------------ccCCH
Q 024032 138 -------SSHTITMYMEEHNVMRSLQSGFCVYDSRGF--------NY----NRVHEGLEELS-------------SWMSE 185 (273)
Q Consensus 138 -------~~~~i~~v~q~~~~~~~~~~~~tv~en~~~--------~~----~~~~~~l~~~~-------------~~LSg 185 (273)
.++.+++++|++.+ +...|+.+|..+ .. +.+.++++.++ ..|||
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~----~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~ 151 (252)
T PRK14256 76 RGVDPVSIRRRVGMVFQKPNP----FPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSG 151 (252)
T ss_pred ccCChHHhhccEEEEecCCCC----CCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCH
Confidence 35679999999775 334588877321 11 22344444443 56999
Q ss_pred HHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeec
Q 024032 186 GVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLD 247 (273)
Q Consensus 186 Gqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g 247 (273)
||+||. |+ +.+|++|||||||+|||+. +.++++.+ +.|||++ .+||++++|++|++++.|
T Consensus 152 G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~ 229 (252)
T PRK14256 152 GQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE--KYTIIIVTHNMQQAARVSDYTAFFYMGDLVECG 229 (252)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--CCcEEEEECCHHHHHhhCCEEEEEECCEEEEeC
Confidence 999987 33 7899999999999999999 34556654 5788888 568999999999999999
Q ss_pred ChhhhccChhhH
Q 024032 248 ATKRLFSAPGLR 259 (273)
Q Consensus 248 ~~~~l~~~~~l~ 259 (273)
++++++.++...
T Consensus 230 ~~~~~~~~~~~~ 241 (252)
T PRK14256 230 ETKKIFTTPEKK 241 (252)
T ss_pred CHHHHHhCCCcH
Confidence 999998765443
No 171
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=8.4e-37 Score=268.08 Aligned_cols=176 Identities=18% Similarity=0.189 Sum_probs=136.3
Q ss_pred ceEEEEEEEEeecCC--eeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----
Q 024032 66 LNELRHKFLSYRSGD--FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN----- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~--~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~----- 137 (273)
.++++|++++|...+ .++ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~ 76 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKA----LDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRL 76 (228)
T ss_pred CeEEEeeeEeccCCCcceee----ecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhh
Confidence 368999999995321 256 999999999999999999999999999999999999 99999999998753
Q ss_pred ---CCccEEEEeccchhhhccCCcccccccccC-------C--HHHH----HHHHHHhc----------ccCCHHHHHHH
Q 024032 138 ---SSHTITMYMEEHNVMRSLQSGFCVYDSRGF-------N--YNRV----HEGLEELS----------SWMSEGVHHNQ 191 (273)
Q Consensus 138 ---~~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~--~~~~----~~~l~~~~----------~~LSgGqkq~~ 191 (273)
.++.++|++|++... +...+|+++|..+ . .+.. .+.++.++ ..|||||+||.
T Consensus 77 ~~~~~~~i~~~~q~~~~~--~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv 154 (228)
T cd03257 77 RKIRRKEIQMVFQDPMSS--LNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRV 154 (228)
T ss_pred HHHhhccEEEEecCchhh--cCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHH
Confidence 245799999997421 1345688887321 1 1111 23444433 66999999986
Q ss_pred ---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeec
Q 024032 192 ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLD 247 (273)
Q Consensus 192 ---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g 247 (273)
|+ +.+|++|||||||++||+. +.++++.++.|.|||++ .+||++++|++|+++..|
T Consensus 155 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 155 AIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 33 7899999999999999999 33555555447899888 468999999999998654
No 172
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.8e-37 Score=274.24 Aligned_cols=180 Identities=18% Similarity=0.254 Sum_probs=144.9
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc------CccEEEECCeeCCC-
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSGN- 137 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~------~~G~I~i~g~~i~~- 137 (273)
..++++|+++.|. ++.+ |+++||+|++||++||+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 11 ~~l~~~~l~~~~~--~~~i----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~ 84 (258)
T PRK14268 11 PQIKVENLNLWYG--EKQA----LKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEP 84 (258)
T ss_pred eeEEEeeeEEEeC--Ceee----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccc
Confidence 4799999999884 4566 999999999999999999999999999999999985 59999999988742
Q ss_pred ------CCccEEEEeccchhhhccCCcccccccccC-------CH----HHHHHHHHHhc-------------ccCCHHH
Q 024032 138 ------SSHTITMYMEEHNVMRSLQSGFCVYDSRGF-------NY----NRVHEGLEELS-------------SWMSEGV 187 (273)
Q Consensus 138 ------~~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~~----~~~~~~l~~~~-------------~~LSgGq 187 (273)
.++.++|++|++.++ ..|+++|..+ .. +.+.++++.++ ..|||||
T Consensus 85 ~~~~~~~~~~i~~v~q~~~~~-----~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~ 159 (258)
T PRK14268 85 DVDVVELRKNVGMVFQKPNPF-----PMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQ 159 (258)
T ss_pred cchHHHHhhhEEEEecCCccC-----cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHH
Confidence 345799999987643 2588887421 11 22445555442 5799999
Q ss_pred HHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecCh
Q 024032 188 HHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDAT 249 (273)
Q Consensus 188 kq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~ 249 (273)
+||. |+ +.+|++|||||||++||+. +.++++. + +.|||++ ++||++++|++|++++.|++
T Consensus 160 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~-~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~ 237 (258)
T PRK14268 160 QQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLK-K-DYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQT 237 (258)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-h-CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9987 33 7899999999999999999 3355554 3 7899888 56899999999999999999
Q ss_pred hhhccChh
Q 024032 250 KRLFSAPG 257 (273)
Q Consensus 250 ~~l~~~~~ 257 (273)
++++.++.
T Consensus 238 ~~~~~~~~ 245 (258)
T PRK14268 238 RQIFHNPR 245 (258)
T ss_pred HHHhcCCC
Confidence 99976543
No 173
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=3.4e-37 Score=268.00 Aligned_cols=167 Identities=22% Similarity=0.252 Sum_probs=132.7
Q ss_pred EEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCcc
Q 024032 68 ELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHT 141 (273)
Q Consensus 68 ~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~ 141 (273)
+++|++++|..+.+++ |+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|+++.. .++.
T Consensus 1 ~~~~l~~~~~~~~~~i----l~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 76 (211)
T cd03225 1 ELKNLSFSYPDGARPA----LDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRK 76 (211)
T ss_pred CceeEEEecCCCCeee----ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhh
Confidence 4688999985322567 999999999999999999999999999999999999 99999999998753 3467
Q ss_pred EEEEeccchhhhccCCcccccccccC-------C----HHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCC
Q 024032 142 ITMYMEEHNVMRSLQSGFCVYDSRGF-------N----YNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSD 197 (273)
Q Consensus 142 i~~v~q~~~~~~~~~~~~tv~en~~~-------~----~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p 197 (273)
++|++|++... ++..|+.+|..+ . .+.+.+.++.++ ..||||||||. |+ +.+|
T Consensus 77 i~~~~q~~~~~---~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p 153 (211)
T cd03225 77 VGLVFQNPDDQ---FFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDP 153 (211)
T ss_pred ceEEecChhhh---cCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 89999987431 345588887321 1 123445565554 67999999986 33 7899
Q ss_pred CEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCe
Q 024032 198 DCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGD 242 (273)
Q Consensus 198 ~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~ 242 (273)
++|||||||+|||+. +.++++.++ |.|||++ .+||++++|++|+
T Consensus 154 ~llllDEPt~~LD~~~~~~~~~~l~~~~~~-~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 154 DILLLDEPTAGLDPAGRRELLELLKKLKAE-GKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999 335556555 8899988 4589999999985
No 174
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=6.2e-37 Score=329.65 Aligned_cols=213 Identities=14% Similarity=0.171 Sum_probs=174.1
Q ss_pred hhccchhhhhhhhHHHHHHHhchhhhcc-------------------------CCCCceEEEEEEEEeecCCeeeeccce
Q 024032 34 KLKLDLPNVSTLTPRLRVLREMERLALI-------------------------APDGLNELRHKFLSYRSGDFWIPIGGI 88 (273)
Q Consensus 34 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~-------------------------~~~~~i~~~~v~~~y~~g~~~v~~~~L 88 (273)
..-..+.....+.+|+.++.+.+++... +..+.|+++||+++|+.+..++ |
T Consensus 1160 ~~~~~le~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~v----L 1235 (1490)
T TIGR01271 1160 NSSIDVDGLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAV----L 1235 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCCCcce----e
Confidence 3345667778889999998865432110 1135799999999998665667 9
Q ss_pred eeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeCCC-----CCccEEEEeccchhhhccCCcccccc
Q 024032 89 QKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYD 163 (273)
Q Consensus 89 ~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~e 163 (273)
+|+||+|++||.+||+|+||||||||+++|+|+++.+|+|.+||.++.. +|+++++++|++.+ |..|+++
T Consensus 1236 ~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~L-----F~GTIR~ 1310 (1490)
T TIGR01271 1236 QDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFI-----FSGTFRK 1310 (1490)
T ss_pred eccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEcccCCHHHHHhceEEEeCCCcc-----CccCHHH
Confidence 9999999999999999999999999999999998888999999999874 67899999999985 4569999
Q ss_pred ccc----CCHHHHHHHHHHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH--H
Q 024032 164 SRG----FNYNRVHEGLEELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK--S 213 (273)
Q Consensus 164 n~~----~~~~~~~~~l~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~--~ 213 (273)
|.. .+++++.++++.++ ..||||||||. |+ +++|+|||||||||+||+. .
T Consensus 1311 NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~ 1390 (1490)
T TIGR01271 1311 NLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQ 1390 (1490)
T ss_pred HhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHH
Confidence 953 36778888888765 36999999986 55 8999999999999999999 2
Q ss_pred HHH-HHHhc-CCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccC
Q 024032 214 SPK-YVLRR-VDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSA 255 (273)
Q Consensus 214 ~l~-~l~~~-~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~ 255 (273)
.+. .+.+. .++|||+| ..+|+|++|++|+|++.|+|+++++.
T Consensus 1391 ~I~~~L~~~~~~~TvI~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~~ 1441 (1490)
T TIGR01271 1391 IIRKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNE 1441 (1490)
T ss_pred HHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHHcC
Confidence 222 23221 27899999 45899999999999999999999853
No 175
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=8.2e-37 Score=270.79 Aligned_cols=176 Identities=15% Similarity=0.140 Sum_probs=137.9
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCc--c-CccEEEECCeeCCC------
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVL--S-RSGLVLFAQTSSGN------ 137 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~--~-~~G~I~i~g~~i~~------ 137 (273)
++++|++++|+ ++.+ |+++||+|++||+++|+||||||||||+++|+|++ + ++|+|.++|+++..
T Consensus 1 l~~~~l~~~~~--~~~~----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~ 74 (243)
T TIGR01978 1 LKIKDLHVSVE--DKEI----LKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDER 74 (243)
T ss_pred CeEeeEEEEEC--CEEE----EeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHh
Confidence 47899999994 4567 99999999999999999999999999999999994 6 89999999998753
Q ss_pred CCccEEEEeccchhhhccCCcccccccccC--------------C----HHHHHHHHHHhc----------c-cCCHHHH
Q 024032 138 SSHTITMYMEEHNVMRSLQSGFCVYDSRGF--------------N----YNRVHEGLEELS----------S-WMSEGVH 188 (273)
Q Consensus 138 ~~~~i~~v~q~~~~~~~~~~~~tv~en~~~--------------~----~~~~~~~l~~~~----------~-~LSgGqk 188 (273)
.+..+++++|++..+ ...|+.+|... + .+.+.+.++.++ . .||||||
T Consensus 75 ~~~~i~~v~q~~~~~----~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~ 150 (243)
T TIGR01978 75 ARAGLFLAFQYPEEI----PGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEK 150 (243)
T ss_pred hccceEeeecccccc----CCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHH
Confidence 123488999998754 33466665210 1 123444554443 3 4999999
Q ss_pred HHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------ee-CCEEEEEeCCeEeeecCh
Q 024032 189 HNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NI-AEIYKALKAGDSKPLDAT 249 (273)
Q Consensus 189 q~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~-ad~i~vl~~G~i~~~g~~ 249 (273)
||. |+ +.+|++|||||||++||+. +.++++.++ |.|||++ .. ||++++|++|+++..|++
T Consensus 151 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~ 229 (243)
T TIGR01978 151 KRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREP-DRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDV 229 (243)
T ss_pred HHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-CcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCH
Confidence 987 33 7899999999999999999 345555543 8899988 34 799999999999999998
Q ss_pred hhhc
Q 024032 250 KRLF 253 (273)
Q Consensus 250 ~~l~ 253 (273)
+++.
T Consensus 230 ~~~~ 233 (243)
T TIGR01978 230 ELAK 233 (243)
T ss_pred HHhc
Confidence 7653
No 176
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=1.1e-36 Score=270.19 Aligned_cols=186 Identities=19% Similarity=0.263 Sum_probs=148.7
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC---CCccE
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---SSHTI 142 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---~~~~i 142 (273)
+++++++++|+ ++++ |+++||++.+||+++|+||||||||||+++|+|+++ ++|+|.++|.++.. .++.+
T Consensus 1 i~i~~l~~~~~--~~~i----l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i 74 (237)
T TIGR00968 1 IEIANISKRFG--SFQA----LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKI 74 (237)
T ss_pred CEEEEEEEEEC--Ceee----eeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCE
Confidence 47899999985 4567 999999999999999999999999999999999999 99999999998753 34578
Q ss_pred EEEeccchhhhccCCcccccccccC-------C----HHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCC
Q 024032 143 TMYMEEHNVMRSLQSGFCVYDSRGF-------N----YNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDD 198 (273)
Q Consensus 143 ~~v~q~~~~~~~~~~~~tv~en~~~-------~----~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~ 198 (273)
++++|++..+ ...|+.+|..+ . .+.+.++++.++ ..||+||+||. |+ +++|+
T Consensus 75 ~~~~q~~~~~----~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~ 150 (237)
T TIGR00968 75 GFVFQHYALF----KHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQ 150 (237)
T ss_pred EEEecChhhc----cCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999988753 34577777321 1 223455566654 57999999986 33 78999
Q ss_pred EEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChhhHHHh
Q 024032 199 CALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPGLRKCS 262 (273)
Q Consensus 199 iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~l~~~~ 262 (273)
++||||||++||+. +.++++.++.+.|||++ +.||++++|++|++++.|++++++..+....++
T Consensus 151 llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~~~~~~~~ 228 (237)
T TIGR00968 151 VLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDHPANPFVM 228 (237)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcCCCcHHHH
Confidence 99999999999999 33455554447899888 568999999999999999999987665444333
No 177
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=4.5e-37 Score=267.37 Aligned_cols=166 Identities=19% Similarity=0.283 Sum_probs=133.9
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-------C
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-------S 138 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-------~ 138 (273)
++++|++++|. ++++ |+++||++++|++++|+||||||||||+++|+|+++ ++|+|.++|+++.. .
T Consensus 1 l~~~~l~~~~~--~~~~----l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (213)
T cd03262 1 IEIKNLHKSFG--DFHV----LKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINEL 74 (213)
T ss_pred CEEEEEEEEEC--CeEe----ecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHH
Confidence 47899999984 3566 999999999999999999999999999999999999 99999999998732 3
Q ss_pred CccEEEEeccchhhhccCCcccccccccC--------CH----HHHHHHHHHhc---------ccCCHHHHHHH---Hh-
Q 024032 139 SHTITMYMEEHNVMRSLQSGFCVYDSRGF--------NY----NRVHEGLEELS---------SWMSEGVHHNQ---RC- 193 (273)
Q Consensus 139 ~~~i~~v~q~~~~~~~~~~~~tv~en~~~--------~~----~~~~~~l~~~~---------~~LSgGqkq~~---r~- 193 (273)
++.++|++|++.+ +..+|+.||..+ .. +.+.++++.++ .+|||||+||. |+
T Consensus 75 ~~~i~~~~q~~~~----~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al 150 (213)
T cd03262 75 RQKVGMVFQQFNL----FPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARAL 150 (213)
T ss_pred HhcceEEeccccc----CCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHH
Confidence 4679999999875 334588887321 11 23445555554 67999999986 33
Q ss_pred cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeE
Q 024032 194 LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDS 243 (273)
Q Consensus 194 l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i 243 (273)
+.+|++|||||||+|||+. +.++++.++ |.|||++ .+||++++|++|++
T Consensus 151 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 151 AMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEE-GMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 7899999999999999999 345556554 8899888 56899999999974
No 178
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-36 Score=273.19 Aligned_cols=183 Identities=17% Similarity=0.274 Sum_probs=144.4
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc------CccEEEECCeeCCC
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSGN 137 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~------~~G~I~i~g~~i~~ 137 (273)
..+++++|+++.|. ++.+ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 10 ~~~l~i~~l~~~~~--~~~~----l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~ 83 (259)
T PRK14274 10 QEVYQINGMNLWYG--QHHA----LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILK 83 (259)
T ss_pred CceEEEeeEEEEEC--Ceee----EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccc
Confidence 34799999999984 4566 999999999999999999999999999999999974 48999999998742
Q ss_pred -------CCccEEEEeccchhhhccCCcccccccccC--------CH----HHHHHHHHHhc-------------ccCCH
Q 024032 138 -------SSHTITMYMEEHNVMRSLQSGFCVYDSRGF--------NY----NRVHEGLEELS-------------SWMSE 185 (273)
Q Consensus 138 -------~~~~i~~v~q~~~~~~~~~~~~tv~en~~~--------~~----~~~~~~l~~~~-------------~~LSg 185 (273)
.++.++|++|++.++ ..|+++|..+ .. +++.++++.++ .+|||
T Consensus 84 ~~~~~~~~~~~i~~v~q~~~~~-----~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~ 158 (259)
T PRK14274 84 GKVDLVELRKNIGMVFQKGNPF-----PQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSG 158 (259)
T ss_pred cccCHHHHhhceEEEecCCccc-----ccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCH
Confidence 346799999997653 2378877321 11 12333444432 56999
Q ss_pred HHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeec
Q 024032 186 GVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLD 247 (273)
Q Consensus 186 Gqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g 247 (273)
||+||. |+ +.+|++|||||||++||+. +.++++.+ +.|+|++ ..||++++|++|++++.|
T Consensus 159 Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g 236 (259)
T PRK14274 159 GQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE--KYTIVIVTHNMQQAARVSDQTAFFYMGELVECN 236 (259)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEC
Confidence 999987 33 7899999999999999999 33455543 6888888 568999999999999999
Q ss_pred ChhhhccChhhH
Q 024032 248 ATKRLFSAPGLR 259 (273)
Q Consensus 248 ~~~~l~~~~~l~ 259 (273)
++++++.++...
T Consensus 237 ~~~~~~~~~~~~ 248 (259)
T PRK14274 237 DTNKMFSNPDDQ 248 (259)
T ss_pred CHHHHhhCCCCH
Confidence 999998665443
No 179
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-36 Score=271.60 Aligned_cols=178 Identities=19% Similarity=0.251 Sum_probs=143.4
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCc---c-CccEEEECCeeCCC----
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVL---S-RSGLVLFAQTSSGN---- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~---~-~~G~I~i~g~~i~~---- 137 (273)
.++++|+++.|+ ++++ |+++||+|++||+++|+||||||||||+++|+|++ + ++|+|.++|+++..
T Consensus 2 ~~~~~~l~~~~~--~~~~----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~ 75 (246)
T PRK14269 2 IAKTTNLNLFYG--KKQA----LFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVV 75 (246)
T ss_pred ceeeeeeEEEEC--CEee----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHH
Confidence 478999999994 4566 99999999999999999999999999999999997 3 79999999998753
Q ss_pred -CCccEEEEeccchhhhccCCcccccccccC---------C----HHHHHHHHHHhc-------------ccCCHHHHHH
Q 024032 138 -SSHTITMYMEEHNVMRSLQSGFCVYDSRGF---------N----YNRVHEGLEELS-------------SWMSEGVHHN 190 (273)
Q Consensus 138 -~~~~i~~v~q~~~~~~~~~~~~tv~en~~~---------~----~~~~~~~l~~~~-------------~~LSgGqkq~ 190 (273)
.++.++|++|++.++ ..|++||..+ . .+++.+.++.++ ..|||||+||
T Consensus 76 ~~~~~i~~~~q~~~l~-----~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 150 (246)
T PRK14269 76 ALRKNVGMVFQQPNVF-----VKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQR 150 (246)
T ss_pred HHhhhEEEEecCCccc-----cccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHH
Confidence 356799999998753 3488888421 1 112344555433 4699999998
Q ss_pred H---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhh
Q 024032 191 Q---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRL 252 (273)
Q Consensus 191 ~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l 252 (273)
. |+ +++|++|||||||++||+. +.++++. + +.|+|++ ..||++++|++|++++.|+++++
T Consensus 151 v~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 228 (246)
T PRK14269 151 LCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELS-H-NLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEF 228 (246)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh-C-CCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHH
Confidence 6 33 7899999999999999999 2344443 3 7898888 56899999999999999999998
Q ss_pred ccCh
Q 024032 253 FSAP 256 (273)
Q Consensus 253 ~~~~ 256 (273)
+..+
T Consensus 229 ~~~~ 232 (246)
T PRK14269 229 FENP 232 (246)
T ss_pred HhCC
Confidence 7654
No 180
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-36 Score=271.10 Aligned_cols=185 Identities=18% Similarity=0.259 Sum_probs=145.8
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-C-----ccEEEECCeeCCC-
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R-----SGLVLFAQTSSGN- 137 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~-----~G~I~i~g~~i~~- 137 (273)
..++++|++++|. ++.+ |+++||+|++|++++|+||||||||||+++|+|+++ + +|+|.++|.++..
T Consensus 3 ~~l~~~~l~~~~~--~~~i----l~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~ 76 (251)
T PRK14249 3 PKIKIRGVNFFYH--KHQV----LKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSP 76 (251)
T ss_pred ceEEEEEEEEEEC--CeeE----ecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEcccc
Confidence 4689999999984 4556 999999999999999999999999999999999998 6 5999999998742
Q ss_pred ------CCccEEEEeccchhhhccCCcccccccccC-------C-H----HHHHHHHHHhc-------------ccCCHH
Q 024032 138 ------SSHTITMYMEEHNVMRSLQSGFCVYDSRGF-------N-Y----NRVHEGLEELS-------------SWMSEG 186 (273)
Q Consensus 138 ------~~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~-~----~~~~~~l~~~~-------------~~LSgG 186 (273)
.++.++|++|++.++ ..|+.||..+ . . +.+.++++.++ ..||||
T Consensus 77 ~~~~~~~~~~i~~v~q~~~~~-----~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G 151 (251)
T PRK14249 77 NLDVVNLRKRVGMVFQQPNPF-----PKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGG 151 (251)
T ss_pred ccChHHhhceEEEEecCCccC-----cCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHH
Confidence 356799999998743 2378877322 1 1 12233333321 579999
Q ss_pred HHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecC
Q 024032 187 VHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDA 248 (273)
Q Consensus 187 qkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~ 248 (273)
|+||. |+ +.+|++|||||||++||+. +.++++. + +.|||++ ..||++++|++|++++.|+
T Consensus 152 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~ 229 (251)
T PRK14249 152 QQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-Q-NYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGR 229 (251)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCC
Confidence 99987 33 7899999999999999999 3345553 3 7899988 4589999999999999999
Q ss_pred hhhhccChhhHHHh
Q 024032 249 TKRLFSAPGLRKCS 262 (273)
Q Consensus 249 ~~~l~~~~~l~~~~ 262 (273)
+++++..+...+++
T Consensus 230 ~~~~~~~~~~~~~~ 243 (251)
T PRK14249 230 TGEIFSRPRDKRTE 243 (251)
T ss_pred HHHHHhCCCChHHH
Confidence 99998766554443
No 181
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-36 Score=271.09 Aligned_cols=181 Identities=20% Similarity=0.303 Sum_probs=144.0
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhC---cc-C--ccEEEECCeeCCC--
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSV---LS-R--SGLVLFAQTSSGN-- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl---~~-~--~G~I~i~g~~i~~-- 137 (273)
+++++|+++.|. ++.+ |+++||+|++||+++|+||||||||||+++|+|+ ++ . +|+|.++|+++..
T Consensus 3 ~l~~~~~~~~~~--~~~~----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 76 (250)
T PRK14245 3 KIDARDVNFWYG--DFHA----LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKG 76 (250)
T ss_pred EEEEEEEEEEEC--CEeE----EeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEeccccc
Confidence 688999999984 4566 9999999999999999999999999999999997 34 2 8999999998742
Q ss_pred -----CCccEEEEeccchhhhccCCcccccccccC--------C----HHHHHHHHHHhc-------------ccCCHHH
Q 024032 138 -----SSHTITMYMEEHNVMRSLQSGFCVYDSRGF--------N----YNRVHEGLEELS-------------SWMSEGV 187 (273)
Q Consensus 138 -----~~~~i~~v~q~~~~~~~~~~~~tv~en~~~--------~----~~~~~~~l~~~~-------------~~LSgGq 187 (273)
.++.++|++|++.++ ..|+.+|..+ . .+.+.++++.++ ..|||||
T Consensus 77 ~~~~~~~~~i~~v~q~~~~~-----~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~ 151 (250)
T PRK14245 77 VQVDELRKNVGMVFQRPNPF-----PKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQ 151 (250)
T ss_pred ccHHHHhhheEEEecCCccC-----cccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHH
Confidence 245799999987643 2477777321 1 123445555442 4799999
Q ss_pred HHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecCh
Q 024032 188 HHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDAT 249 (273)
Q Consensus 188 kq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~ 249 (273)
|||. |+ +.+|++|||||||+|||+. +.++++. + +.|||++ .+||++++|++|++++.|++
T Consensus 152 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~ 229 (250)
T PRK14245 152 QQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-K-DYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDT 229 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCH
Confidence 9986 33 7899999999999999999 3355553 3 7898888 56899999999999999999
Q ss_pred hhhccChhhH
Q 024032 250 KRLFSAPGLR 259 (273)
Q Consensus 250 ~~l~~~~~l~ 259 (273)
+++++++...
T Consensus 230 ~~~~~~~~~~ 239 (250)
T PRK14245 230 KKIFTNPEKE 239 (250)
T ss_pred HHHhcCCCCh
Confidence 9998765444
No 182
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-36 Score=271.15 Aligned_cols=180 Identities=19% Similarity=0.249 Sum_probs=142.6
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc------CccEEEECCeeCCC--
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSGN-- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~------~~G~I~i~g~~i~~-- 137 (273)
+++++|++++|. ++.+ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 5 ~l~~~~l~~~~~--~~~~----l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~ 78 (252)
T PRK14239 5 ILQVSDLSVYYN--KKKA----LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPR 78 (252)
T ss_pred eEEEEeeEEEEC--Ceee----eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcc
Confidence 689999999984 4556 999999999999999999999999999999999853 28999999998732
Q ss_pred -----CCccEEEEeccchhhhccCCccccccccc-------CC-H----HHHHHHHHHhc-------------ccCCHHH
Q 024032 138 -----SSHTITMYMEEHNVMRSLQSGFCVYDSRG-------FN-Y----NRVHEGLEELS-------------SWMSEGV 187 (273)
Q Consensus 138 -----~~~~i~~v~q~~~~~~~~~~~~tv~en~~-------~~-~----~~~~~~l~~~~-------------~~LSgGq 187 (273)
.++.+++++|++.++ ..|++||.. .. . +.+.++++.++ .+||+||
T Consensus 79 ~~~~~~~~~i~~v~q~~~~~-----~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~ 153 (252)
T PRK14239 79 TDTVDLRKEIGMVFQQPNPF-----PMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQ 153 (252)
T ss_pred cchHhhhhcEEEEecCCccC-----cCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHH
Confidence 356799999997643 358888732 11 1 22333343331 6799999
Q ss_pred HHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecCh
Q 024032 188 HHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDAT 249 (273)
Q Consensus 188 kq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~ 249 (273)
|||. |+ +.+|++|||||||++||+. +.++++.+ +.|||++ .+||++++|++|++++.|++
T Consensus 154 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~ 231 (252)
T PRK14239 154 QQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD--DYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDT 231 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh--CCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9986 33 7899999999999999999 33555543 6788888 56899999999999999999
Q ss_pred hhhccChhh
Q 024032 250 KRLFSAPGL 258 (273)
Q Consensus 250 ~~l~~~~~l 258 (273)
+++++.+..
T Consensus 232 ~~~~~~~~~ 240 (252)
T PRK14239 232 KQMFMNPKH 240 (252)
T ss_pred HHHHhCCCC
Confidence 999876543
No 183
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-36 Score=265.17 Aligned_cols=169 Identities=19% Similarity=0.244 Sum_probs=135.6
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC---CCccE
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---SSHTI 142 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---~~~~i 142 (273)
++++|++++|. ++ ..++||++++||+++|+||||||||||+++|+|+++ ++|+|.++|.++.. .++.+
T Consensus 1 i~~~~l~~~~~--~~------~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i 72 (211)
T cd03298 1 VRLDKIRFSYG--EQ------PMHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPV 72 (211)
T ss_pred CEEEeEEEEeC--CE------ecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccE
Confidence 47899999984 22 239999999999999999999999999999999999 99999999998753 34579
Q ss_pred EEEeccchhhhccCCcccccccccC-----------CHHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCC
Q 024032 143 TMYMEEHNVMRSLQSGFCVYDSRGF-----------NYNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDD 198 (273)
Q Consensus 143 ~~v~q~~~~~~~~~~~~tv~en~~~-----------~~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~ 198 (273)
++++|++.++ ..+|+.||..+ ..+++.++++.++ ..||||||||. |+ +.+|+
T Consensus 73 ~~~~q~~~~~----~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~ 148 (211)
T cd03298 73 SMLFQENNLF----AHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKP 148 (211)
T ss_pred EEEecccccC----CCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 9999998753 34588887321 1234556666655 67999999986 33 78999
Q ss_pred EEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeec
Q 024032 199 CALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLD 247 (273)
Q Consensus 199 iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g 247 (273)
+|||||||++||+. +.++++.++.|.|||++ .+||++++|++|++++.|
T Consensus 149 llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 149 VLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999 33555554448899988 458999999999998653
No 184
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-36 Score=274.55 Aligned_cols=191 Identities=17% Similarity=0.167 Sum_probs=147.8
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-C-Ccc
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-S-SHT 141 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-~-~~~ 141 (273)
..++++|++++|+ +++++ |+++||+|++|+++||+||||||||||+++|+|+++ ++|+|.++|+++.. . ++.
T Consensus 5 ~~l~~~~l~~~~~-~~~~i----l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 79 (272)
T PRK15056 5 AGIVVNDVTVTWR-NGHTA----LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNL 79 (272)
T ss_pred ceEEEEeEEEEec-CCcEE----EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccce
Confidence 3689999999995 23567 999999999999999999999999999999999999 99999999998753 2 245
Q ss_pred EEEEeccchhhhccCCccccccccc-----------C----CHHHHHHHHHHhc---------ccCCHHHHHHH---Hh-
Q 024032 142 ITMYMEEHNVMRSLQSGFCVYDSRG-----------F----NYNRVHEGLEELS---------SWMSEGVHHNQ---RC- 193 (273)
Q Consensus 142 i~~v~q~~~~~~~~~~~~tv~en~~-----------~----~~~~~~~~l~~~~---------~~LSgGqkq~~---r~- 193 (273)
++|++|++.... .+..++.+|.. . ..+.+.++++.++ ..|||||+||. |+
T Consensus 80 i~~v~q~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL 157 (272)
T PRK15056 80 VAYVPQSEEVDW--SFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAI 157 (272)
T ss_pred EEEecccccccc--CCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHH
Confidence 899999865311 11223444321 0 1223455666655 67999999986 33
Q ss_pred cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChhhH
Q 024032 194 LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPGLR 259 (273)
Q Consensus 194 l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~l~ 259 (273)
+.+|++|||||||++||+. +.++++.++ |.|||++ .+||+++++ +|+++..|++++++..+.+.
T Consensus 158 ~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~-g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~~~~~~~~ 235 (272)
T PRK15056 158 AQQGQVILLDEPFTGVDVKTEARIISLLRELRDE-GKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETTFTAENLE 235 (272)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhccCHHHHH
Confidence 7899999999999999999 345556554 8899888 568999777 89999999999987766666
Q ss_pred HHhCC
Q 024032 260 KCSKI 264 (273)
Q Consensus 260 ~~~~~ 264 (273)
+.|..
T Consensus 236 ~~~~~ 240 (272)
T PRK15056 236 LAFSG 240 (272)
T ss_pred HHhcc
Confidence 66643
No 185
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=2.3e-36 Score=270.74 Aligned_cols=185 Identities=15% Similarity=0.172 Sum_probs=149.3
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEEE
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~~ 144 (273)
+++++|++++|. ++.+ |+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|. ..++|
T Consensus 4 ~l~~~~l~~~~~--~~~v----l~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~------~~i~~ 71 (251)
T PRK09544 4 LVSLENVSVSFG--QRRV----LSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGK------LRIGY 71 (251)
T ss_pred EEEEeceEEEEC--CceE----EEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCc------cCEEE
Confidence 689999999995 4556 999999999999999999999999999999999999 9999999872 46899
Q ss_pred EeccchhhhccCCcccccccc----cCCHHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCC
Q 024032 145 YMEEHNVMRSLQSGFCVYDSR----GFNYNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDDCALMKNDAE 207 (273)
Q Consensus 145 v~q~~~~~~~~~~~~tv~en~----~~~~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~iLlLDEPts 207 (273)
++|++.+++. ...++.++. +...+++.++++.++ ..|||||+||. ++ +.+|++|||||||+
T Consensus 72 v~q~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~ 149 (251)
T PRK09544 72 VPQKLYLDTT--LPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQ 149 (251)
T ss_pred eccccccccc--cChhHHHHHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 9998765322 123566652 223455667777665 67999999986 33 78999999999999
Q ss_pred CCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChhhHHHhCCc
Q 024032 208 IDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPGLRKCSKIS 265 (273)
Q Consensus 208 ~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~l~~~~~~~ 265 (273)
+||+. +.++++.++.|.|||++ ..||++++|++ +++..|+++++.+.+.+.+.|+.+
T Consensus 150 ~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~~~~~~~~~~~~ 220 (251)
T PRK09544 150 GVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSLHPEFISMFGPR 220 (251)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhCCHHHHHHhCCC
Confidence 99999 23455554447899988 56899999965 799999999998888788888764
No 186
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-36 Score=273.38 Aligned_cols=182 Identities=18% Similarity=0.258 Sum_probs=143.5
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc------CccEEEECCeeCCC
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSGN 137 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~------~~G~I~i~g~~i~~ 137 (273)
...++++|++++|. ++.+ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 19 ~~~l~~~~l~~~~~--~~~i----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 92 (268)
T PRK14248 19 EHILEVKDLSIYYG--EKRA----VNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILD 92 (268)
T ss_pred CceEEEEEEEEEeC--Ccee----eeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccc
Confidence 45799999999994 4556 999999999999999999999999999999999853 68999999998742
Q ss_pred -------CCccEEEEeccchhhhccCCcccccccccC--------C----HHHHHHHHHHh-------------cccCCH
Q 024032 138 -------SSHTITMYMEEHNVMRSLQSGFCVYDSRGF--------N----YNRVHEGLEEL-------------SSWMSE 185 (273)
Q Consensus 138 -------~~~~i~~v~q~~~~~~~~~~~~tv~en~~~--------~----~~~~~~~l~~~-------------~~~LSg 185 (273)
.++.++|++|++.++ ..|+++|..+ . .+.+.++++.+ ..+|||
T Consensus 93 ~~~~~~~~~~~i~~v~q~~~~~-----~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSg 167 (268)
T PRK14248 93 SNINVVNLRREIGMVFQKPNPF-----PKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSG 167 (268)
T ss_pred ccccHHHHhccEEEEecCCccC-----cccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCH
Confidence 346799999987643 2377777321 1 12233333322 167999
Q ss_pred HHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeec
Q 024032 186 GVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLD 247 (273)
Q Consensus 186 Gqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g 247 (273)
||+||. |+ +.+|++|||||||+|||+. +.++++.+ +.|||++ .+||++++|++|++++.|
T Consensus 168 Gq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~ 245 (268)
T PRK14248 168 GQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE--EYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYD 245 (268)
T ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999986 33 7899999999999999999 33455543 6788888 568999999999999999
Q ss_pred ChhhhccChhh
Q 024032 248 ATKRLFSAPGL 258 (273)
Q Consensus 248 ~~~~l~~~~~l 258 (273)
+++++++++..
T Consensus 246 ~~~~~~~~~~~ 256 (268)
T PRK14248 246 QTEQIFTSPKQ 256 (268)
T ss_pred CHHHHHhCCCC
Confidence 99998866443
No 187
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-36 Score=268.70 Aligned_cols=181 Identities=21% Similarity=0.285 Sum_probs=142.3
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCc
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSH 140 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~ 140 (273)
++++|++++|...+.++ |+++||++++|++++|+||||||||||+++|+|+++ ++|+|.++|+++.. .++
T Consensus 1 i~~~~l~~~~~~~~~~~----l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 76 (234)
T cd03251 1 VEFKNVTFRYPGDGPPV----LRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRR 76 (234)
T ss_pred CEEEEEEEEeCCCCccc----eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHh
Confidence 47899999996433356 999999999999999999999999999999999999 99999999988753 346
Q ss_pred cEEEEeccchhhhccCCcccccccccC-----CHHHHH---------HHHHHh-----------cccCCHHHHHHH---H
Q 024032 141 TITMYMEEHNVMRSLQSGFCVYDSRGF-----NYNRVH---------EGLEEL-----------SSWMSEGVHHNQ---R 192 (273)
Q Consensus 141 ~i~~v~q~~~~~~~~~~~~tv~en~~~-----~~~~~~---------~~l~~~-----------~~~LSgGqkq~~---r 192 (273)
.+++++|++.++ ..|++||..+ ....+. +.++.+ ...||+||+||. |
T Consensus 77 ~i~~~~q~~~~~-----~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~ 151 (234)
T cd03251 77 QIGLVSQDVFLF-----NDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIAR 151 (234)
T ss_pred hEEEeCCCCeec-----cccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHH
Confidence 799999987643 3588887432 122222 223222 157999999986 3
Q ss_pred h-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccChhh
Q 024032 193 C-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSAPGL 258 (273)
Q Consensus 193 ~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~~l 258 (273)
+ +.+|++|||||||++||+. +.++++. + +.|||++ ..||++++|++|+++..++++++......
T Consensus 152 al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~ 229 (234)
T cd03251 152 ALLKDPPILILDEATSALDTESERLVQAALERLM-K-NRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGV 229 (234)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-C-CCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHcCcc
Confidence 3 7899999999999999999 3344554 3 7899888 34899999999999999999888755433
No 188
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1.8e-36 Score=296.15 Aligned_cols=183 Identities=15% Similarity=0.160 Sum_probs=150.6
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCC-----
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNS----- 138 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~----- 138 (273)
..++++|++++|. ++.+ |+++||+|++|+++||+||||||||||+|+|+|+++ ++|+|.++|+++...
T Consensus 10 ~~l~~~~l~~~~~--~~~i----l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 83 (510)
T PRK15439 10 PLLCARSISKQYS--GVEV----LKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKA 83 (510)
T ss_pred ceEEEEeEEEEeC--Ccee----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHH
Confidence 4799999999994 4567 999999999999999999999999999999999998 999999999987531
Q ss_pred -CccEEEEeccchhhhccCCcccccccccCC-------HHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCC
Q 024032 139 -SHTITMYMEEHNVMRSLQSGFCVYDSRGFN-------YNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSD 197 (273)
Q Consensus 139 -~~~i~~v~q~~~~~~~~~~~~tv~en~~~~-------~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p 197 (273)
++.++|++|++.+ +..+||+||..+. .+++.++++.++ .+||||||||. |+ +.+|
T Consensus 84 ~~~~i~~v~q~~~~----~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p 159 (510)
T PRK15439 84 HQLGIYLVPQEPLL----FPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDS 159 (510)
T ss_pred HhCCEEEEeccCcc----CCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCC
Confidence 2468999999765 4456898884321 234566677665 68999999987 33 7899
Q ss_pred CEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChhh
Q 024032 198 DCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPGL 258 (273)
Q Consensus 198 ~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~l 258 (273)
++|||||||++||+. +.++++.++ |.|||++ .+||++++|++|+++..|+++++.....+
T Consensus 160 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~ 233 (510)
T PRK15439 160 RILILDEPTASLTPAETERLFSRIRELLAQ-GVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLSTDDII 233 (510)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCHHHHH
Confidence 999999999999999 345566555 8999999 56899999999999999999887654433
No 189
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-36 Score=270.01 Aligned_cols=180 Identities=21% Similarity=0.294 Sum_probs=142.6
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc------CccEEEECCeeCCC-
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSGN- 137 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~------~~G~I~i~g~~i~~- 137 (273)
+.++++|+++.|. ++++ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 2 ~~l~~~~l~~~~~--~~~~----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~ 75 (250)
T PRK14240 2 GKISVKDLDLFYG--DFQA----LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKS 75 (250)
T ss_pred CeEEEEEEEEEEC--Ccee----eecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccc
Confidence 3689999999995 3456 999999999999999999999999999999999864 48999999998742
Q ss_pred ------CCccEEEEeccchhhhccCCcccccccccC--------C----HHHHHHHHHHhc-------------ccCCHH
Q 024032 138 ------SSHTITMYMEEHNVMRSLQSGFCVYDSRGF--------N----YNRVHEGLEELS-------------SWMSEG 186 (273)
Q Consensus 138 ------~~~~i~~v~q~~~~~~~~~~~~tv~en~~~--------~----~~~~~~~l~~~~-------------~~LSgG 186 (273)
.++.+++++|++.++ ..|+++|..+ . .+.+.++++.++ ..||||
T Consensus 76 ~~~~~~~~~~i~~~~q~~~~~-----~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G 150 (250)
T PRK14240 76 DIDVNQLRKRVGMVFQQPNPF-----PMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGG 150 (250)
T ss_pred ccchHHHhccEEEEecCCccC-----cccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHH
Confidence 356799999987643 2588887321 1 122333333331 579999
Q ss_pred HHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecC
Q 024032 187 VHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDA 248 (273)
Q Consensus 187 qkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~ 248 (273)
|+||. |+ +.+|++|||||||++||+. +.++++. + +.|||++ .+||++++|++|+++..++
T Consensus 151 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~ 228 (250)
T PRK14240 151 QQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK-K-DYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGD 228 (250)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCC
Confidence 99986 33 7899999999999999999 3345553 3 7898888 5689999999999999999
Q ss_pred hhhhccChh
Q 024032 249 TKRLFSAPG 257 (273)
Q Consensus 249 ~~~l~~~~~ 257 (273)
+++++..+.
T Consensus 229 ~~~~~~~~~ 237 (250)
T PRK14240 229 TVDLFTNPK 237 (250)
T ss_pred HHHHHhCCC
Confidence 999876543
No 190
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-36 Score=296.79 Aligned_cols=186 Identities=15% Similarity=0.130 Sum_probs=149.8
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCC-----
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNS----- 138 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~----- 138 (273)
.+++++|++++|. ++++ |+++||+|++||++||+||||||||||+|+|+|+++ ++|+|.++|+++...
T Consensus 4 ~~l~~~~l~~~~~--~~~i----l~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~ 77 (510)
T PRK09700 4 PYISMAGIGKSFG--PVHA----LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLA 77 (510)
T ss_pred ceEEEeeeEEEcC--CeEE----eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHH
Confidence 3689999999984 4567 999999999999999999999999999999999998 999999999987542
Q ss_pred -CccEEEEeccchhhhccCCcccccccccC--------------C----HHHHHHHHHHhc---------ccCCHHHHHH
Q 024032 139 -SHTITMYMEEHNVMRSLQSGFCVYDSRGF--------------N----YNRVHEGLEELS---------SWMSEGVHHN 190 (273)
Q Consensus 139 -~~~i~~v~q~~~~~~~~~~~~tv~en~~~--------------~----~~~~~~~l~~~~---------~~LSgGqkq~ 190 (273)
++.++|++|++.+ +..+||+||..+ + .+++.++++.++ .+||||||||
T Consensus 78 ~~~~i~~v~q~~~~----~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr 153 (510)
T PRK09700 78 AQLGIGIIYQELSV----IDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQM 153 (510)
T ss_pred HHCCeEEEeecccc----cCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHH
Confidence 2469999998765 334577776321 1 123455666655 6799999998
Q ss_pred H---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhh
Q 024032 191 Q---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRL 252 (273)
Q Consensus 191 ~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l 252 (273)
. |+ +.+|++|||||||++||+. +.+++++++ |.|||++ .+||++++|++|+++..|+++++
T Consensus 154 v~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 232 (510)
T PRK09700 154 LEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKE-GTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDV 232 (510)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhC
Confidence 7 33 7899999999999999999 345666655 8999998 56899999999999999999887
Q ss_pred ccChhhHHH
Q 024032 253 FSAPGLRKC 261 (273)
Q Consensus 253 ~~~~~l~~~ 261 (273)
.....+...
T Consensus 233 ~~~~~~~~~ 241 (510)
T PRK09700 233 SNDDIVRLM 241 (510)
T ss_pred CHHHHHHHh
Confidence 654444333
No 191
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-36 Score=273.23 Aligned_cols=181 Identities=16% Similarity=0.244 Sum_probs=144.5
Q ss_pred CCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc------CccEEEECCeeCC
Q 024032 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSG 136 (273)
Q Consensus 63 ~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~------~~G~I~i~g~~i~ 136 (273)
.+..++++|++++|. ++.+ |+++||+|++|++++|+||||||||||+++|+|+++ ++|+|+++|+++.
T Consensus 16 ~~~~l~~~nl~~~~~--~~~i----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~ 89 (267)
T PRK14235 16 TEIKMRARDVSVFYG--EKQA----LFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIY 89 (267)
T ss_pred CCceEEEEeEEEEEC--CEEE----EEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECc
Confidence 355899999999994 4567 999999999999999999999999999999999985 6999999999874
Q ss_pred C-------CCccEEEEeccchhhhccCCcccccccccC---------C----HHHHHHHHHHhc-------------ccC
Q 024032 137 N-------SSHTITMYMEEHNVMRSLQSGFCVYDSRGF---------N----YNRVHEGLEELS-------------SWM 183 (273)
Q Consensus 137 ~-------~~~~i~~v~q~~~~~~~~~~~~tv~en~~~---------~----~~~~~~~l~~~~-------------~~L 183 (273)
. .++.+++++|++.++ ..|+.+|..+ . .+++.++++.++ ..|
T Consensus 90 ~~~~~~~~~~~~i~~v~q~~~~~-----~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L 164 (267)
T PRK14235 90 DPRLDVVELRARVGMVFQKPNPF-----PKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGL 164 (267)
T ss_pred ccccchHHHhhceEEEecCCCCC-----CCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccC
Confidence 2 346789999987643 2377777321 1 122344454432 569
Q ss_pred CHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEee
Q 024032 184 SEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKP 245 (273)
Q Consensus 184 SgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~ 245 (273)
||||+||. |+ +.+|++|||||||++||+. +.++++.+ +.|||++ .+||++++|++|+++.
T Consensus 165 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~--~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~ 242 (267)
T PRK14235 165 SGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ--NYTIVIVTHSMQQAARVSQRTAFFHLGNLVE 242 (267)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc--CCeEEEEEcCHHHHHhhCCEEEEEECCEEEE
Confidence 99999987 33 7899999999999999999 33555543 6788888 5689999999999999
Q ss_pred ecChhhhccCh
Q 024032 246 LDATKRLFSAP 256 (273)
Q Consensus 246 ~g~~~~l~~~~ 256 (273)
.|++++++.++
T Consensus 243 ~g~~~~~~~~~ 253 (267)
T PRK14235 243 VGDTEKMFTNP 253 (267)
T ss_pred eCCHHHHHhCC
Confidence 99999987544
No 192
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=1.7e-36 Score=264.52 Aligned_cols=170 Identities=19% Similarity=0.294 Sum_probs=138.3
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC---CCccE
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---SSHTI 142 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---~~~~i 142 (273)
++++|++++|.. . ++++||++++|++++|+||||||||||+++|+|+++ ++|+|.++|+++.. .++.+
T Consensus 1 ~~~~~l~~~~~~----~----~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i 72 (213)
T TIGR01277 1 LALDKVRYEYEH----L----PMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPV 72 (213)
T ss_pred CeEEeeeEEeCC----c----ceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccce
Confidence 468999999841 3 789999999999999999999999999999999999 99999999998753 45679
Q ss_pred EEEeccchhhhccCCcccccccccC-----------CHHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCC
Q 024032 143 TMYMEEHNVMRSLQSGFCVYDSRGF-----------NYNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDD 198 (273)
Q Consensus 143 ~~v~q~~~~~~~~~~~~tv~en~~~-----------~~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~ 198 (273)
++++|++.+ +..+|+.||..+ ..+++.++++.++ ..||+||+||. |+ +.+|+
T Consensus 73 ~~v~q~~~~----~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ 148 (213)
T TIGR01277 73 SMLFQENNL----FAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNP 148 (213)
T ss_pred EEEeccCcc----CCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 999999875 344588887421 1234555666655 67999999986 33 78999
Q ss_pred EEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecC
Q 024032 199 CALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDA 248 (273)
Q Consensus 199 iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~ 248 (273)
++||||||++||+. +.++++.++.+.|||++ ..||++++|++|++++.|.
T Consensus 149 llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 149 ILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred EEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 99999999999999 34555554447899888 4689999999999998764
No 193
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=1.2e-36 Score=285.13 Aligned_cols=177 Identities=16% Similarity=0.229 Sum_probs=143.9
Q ss_pred EEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC---------CCc
Q 024032 71 HKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---------SSH 140 (273)
Q Consensus 71 ~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---------~~~ 140 (273)
|++++|. + .. + ++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++.. .++
T Consensus 4 ~l~~~~~--~-~~----~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ 75 (354)
T TIGR02142 4 RFSKRLG--D-FS----L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKR 75 (354)
T ss_pred EEEEEEC--C-EE----E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhC
Confidence 6788773 3 23 6 8999999999999999999999999999999999 99999999988742 346
Q ss_pred cEEEEeccchhhhccCCcccccccccCC---------HHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCC
Q 024032 141 TITMYMEEHNVMRSLQSGFCVYDSRGFN---------YNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDD 198 (273)
Q Consensus 141 ~i~~v~q~~~~~~~~~~~~tv~en~~~~---------~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~ 198 (273)
.+++++|++.++ ..+||+||..+. .+++.+.++.++ .+||||||||. |+ +.+|+
T Consensus 76 ~i~~v~q~~~l~----~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~ 151 (354)
T TIGR02142 76 RIGYVFQEARLF----PHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPR 151 (354)
T ss_pred CeEEEecCCccC----CCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 799999998754 445899884321 123566677665 67999999987 33 78999
Q ss_pred EEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChhhH
Q 024032 199 CALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPGLR 259 (273)
Q Consensus 199 iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~l~ 259 (273)
+|||||||++||+. +.++++.++.|.|||++ .+||++++|++|+++..|++++++..+...
T Consensus 152 lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~ 226 (354)
T TIGR02142 152 LLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDLP 226 (354)
T ss_pred EEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCcCcc
Confidence 99999999999999 34556655558899888 468999999999999999999998776543
No 194
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=2.5e-36 Score=297.33 Aligned_cols=209 Identities=18% Similarity=0.137 Sum_probs=163.2
Q ss_pred hhhhhhhhccchhhhhhhhHHHHHHHhchhhh---cc---CCCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEE
Q 024032 28 KFDECVKLKLDLPNVSTLTPRLRVLREMERLA---LI---APDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITI 101 (273)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~---~~---~~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~ 101 (273)
.+..+......++.+..+.+|+.++.+.+... .. ...+.++++|++|+|+. +.++ |+++||+|++|+++
T Consensus 278 pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~-~~~~----l~~i~~~i~~G~~~ 352 (547)
T PRK10522 278 PLLSAVGALPTLLSAQVAFNKLNKLALAPYKAEFPRPQAFPDWQTLELRNVTFAYQD-NGFS----VGPINLTIKRGELL 352 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccCcCceEEEEEEEEEeCC-CCeE----EecceEEEcCCCEE
Confidence 34555556667788899999999886543211 00 11246999999999963 3456 99999999999999
Q ss_pred EEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCcccccccc-cCCHHHHHH
Q 024032 102 LLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSR-GFNYNRVHE 174 (273)
Q Consensus 102 aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~-~~~~~~~~~ 174 (273)
||+||||||||||+++|+|+++ ++|+|.++|+++.+ +++.+++++|++.+|+ .|+++|. ..+.+.+.+
T Consensus 353 aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~-----~ti~~n~~~~~~~~~~~ 427 (547)
T PRK10522 353 FLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFD-----QLLGPEGKPANPALVEK 427 (547)
T ss_pred EEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHH-----HhhccccCchHHHHHHH
Confidence 9999999999999999999999 99999999999864 5678999999998654 4777772 344556666
Q ss_pred HHHHhc--------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHHH--HH-HHH---HhcCCcEEEEc-
Q 024032 175 GLEELS--------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLKS--SP-KYV---LRRVDFAMVVS- 229 (273)
Q Consensus 175 ~l~~~~--------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~~--~l-~~l---~~~~g~tiiiv- 229 (273)
.++.++ ..||||||||. |+ +++|++|||||||++||+.. .+ +.+ .++.++|+|+|
T Consensus 428 ~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~it 507 (547)
T PRK10522 428 WLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAIS 507 (547)
T ss_pred HHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEE
Confidence 666553 37999999986 44 89999999999999999992 22 222 22237899888
Q ss_pred ------eeCCEEEEEeCCeEeee
Q 024032 230 ------NIAEIYKALKAGDSKPL 246 (273)
Q Consensus 230 ------~~ad~i~vl~~G~i~~~ 246 (273)
..||+|++|++|++++.
T Consensus 508 H~~~~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 508 HDDHYFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred echHHHHhCCEEEEEECCEEEEe
Confidence 45899999999999876
No 195
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-36 Score=272.19 Aligned_cols=187 Identities=19% Similarity=0.240 Sum_probs=148.3
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-C-----ccEEEECCeeCC--
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R-----SGLVLFAQTSSG-- 136 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~-----~G~I~i~g~~i~-- 136 (273)
..++++|++++|. +..+ |+++||++++|++++|+||||||||||+++|+|+++ + +|+|.++|+++.
T Consensus 6 ~~l~~~nl~~~~~--~~~i----l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~ 79 (261)
T PRK14258 6 PAIKVNNLSFYYD--TQKI----LEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYER 79 (261)
T ss_pred ceEEEeeEEEEeC--CeeE----eeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhcc
Confidence 3689999999994 3456 999999999999999999999999999999999998 5 799999998863
Q ss_pred -----CCCccEEEEeccchhhhccCCccccccccc-------C-CH----HHHHHHHHHhc-------------ccCCHH
Q 024032 137 -----NSSHTITMYMEEHNVMRSLQSGFCVYDSRG-------F-NY----NRVHEGLEELS-------------SWMSEG 186 (273)
Q Consensus 137 -----~~~~~i~~v~q~~~~~~~~~~~~tv~en~~-------~-~~----~~~~~~l~~~~-------------~~LSgG 186 (273)
..++.+++++|++.++ ..|++||.. . .. +.+.++++.++ ..||||
T Consensus 80 ~~~~~~~~~~i~~~~q~~~l~-----~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG 154 (261)
T PRK14258 80 RVNLNRLRRQVSMVHPKPNLF-----PMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGG 154 (261)
T ss_pred ccchHHhhccEEEEecCCccC-----cccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHH
Confidence 1346689999987643 258888732 1 11 22344454442 579999
Q ss_pred HHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeC-----CeE
Q 024032 187 VHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKA-----GDS 243 (273)
Q Consensus 187 qkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~-----G~i 243 (273)
|+||. |+ +++|++|||||||++||+. +.+++++++.+.|||++ ++||++++|++ |++
T Consensus 155 q~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i 234 (261)
T PRK14258 155 QQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQL 234 (261)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceE
Confidence 99986 33 7899999999999999999 33455544348899888 56899999999 999
Q ss_pred eeecChhhhccChhhHHHh
Q 024032 244 KPLDATKRLFSAPGLRKCS 262 (273)
Q Consensus 244 ~~~g~~~~l~~~~~l~~~~ 262 (273)
+..|++++++..+.....+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~ 253 (261)
T PRK14258 235 VEFGLTKKIFNSPHDSRTR 253 (261)
T ss_pred EEeCCHHHHHhCCCCHHHH
Confidence 9999999998776655444
No 196
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-37 Score=262.04 Aligned_cols=184 Identities=16% Similarity=0.218 Sum_probs=153.8
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC------
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------ 137 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------ 137 (273)
..++++|+.++| |...+ |++||++.++|+++.|||.|||||||+|+||+=+.. +.|.|.++|+.+.-
T Consensus 5 ~~l~v~dlHK~~--G~~eV----LKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G 78 (256)
T COG4598 5 NALEVEDLHKRY--GEHEV----LKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDG 78 (256)
T ss_pred cceehhHHHhhc--ccchh----hcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCC
Confidence 468899999988 55566 999999999999999999999999999999998888 99999999987641
Q ss_pred ------------CCccEEEEeccchhhhccCCcccccccc--------cCCHHH----HHHHHHHhc---------ccCC
Q 024032 138 ------------SSHTITMYMEEHNVMRSLQSGFCVYDSR--------GFNYNR----VHEGLEELS---------SWMS 184 (273)
Q Consensus 138 ------------~~~~i~~v~q~~~~~~~~~~~~tv~en~--------~~~~~~----~~~~l~~~~---------~~LS 184 (273)
+|.+.++|||..+++.++ ||.||. +.++.+ ++..|..++ ..||
T Consensus 79 ~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHm----tvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LS 154 (256)
T COG4598 79 QLKPADKRQLQRLRTRLGMVFQHFNLWSHM----TVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLS 154 (256)
T ss_pred CeeeCCHHHHHHHHHHhhHhhhhcchhHHH----HHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccC
Confidence 345689999999987665 999982 334433 344455555 7899
Q ss_pred HHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeee
Q 024032 185 EGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPL 246 (273)
Q Consensus 185 gGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~ 246 (273)
|||+||. |+ +.+|+++|+|||||+|||+ ..++.++++ |+|++++ ..+.+++++++|.|-++
T Consensus 155 GGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeE-grTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~ 233 (256)
T COG4598 155 GGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEE-GRTMVVVTHEMGFARDVSSHVIFLHQGKIEEE 233 (256)
T ss_pred chHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHh-CCeEEEEeeehhHHHhhhhheEEeecceeccc
Confidence 9999986 44 6899999999999999999 456778877 9999999 44689999999999999
Q ss_pred cChhhhccChhhH
Q 024032 247 DATKRLFSAPGLR 259 (273)
Q Consensus 247 g~~~~l~~~~~l~ 259 (273)
|+|+++|.+|.-.
T Consensus 234 G~P~qvf~nP~S~ 246 (256)
T COG4598 234 GPPEQVFGNPQSP 246 (256)
T ss_pred CChHHHhcCCCCH
Confidence 9999999877544
No 197
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-36 Score=269.00 Aligned_cols=181 Identities=18% Similarity=0.227 Sum_probs=144.4
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc------CccEEEECCeeCCC-
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSGN- 137 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~------~~G~I~i~g~~i~~- 137 (273)
.+++++|+++.|. ++.+ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++..
T Consensus 3 ~~l~~~~l~~~~~--~~~~----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~ 76 (251)
T PRK14270 3 IKMESKNLNLWYG--EKQA----LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDK 76 (251)
T ss_pred cEEEEEEeEEEEC--Ceee----eeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccc
Confidence 3689999999984 4556 999999999999999999999999999999999874 58999999998742
Q ss_pred ------CCccEEEEeccchhhhccCCcccccccccC--------CH----HHHHHHHHHhc-------------ccCCHH
Q 024032 138 ------SSHTITMYMEEHNVMRSLQSGFCVYDSRGF--------NY----NRVHEGLEELS-------------SWMSEG 186 (273)
Q Consensus 138 ------~~~~i~~v~q~~~~~~~~~~~~tv~en~~~--------~~----~~~~~~l~~~~-------------~~LSgG 186 (273)
.++.+++++|++.++ ..|+++|..+ .. +++.++++.++ ..||+|
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~-----~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G 151 (251)
T PRK14270 77 DVDVVELRKRVGMVFQKPNPF-----PMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGG 151 (251)
T ss_pred cccHHHHHhheEEEecCCCcC-----CCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHH
Confidence 246799999997643 3588887421 11 22334444432 679999
Q ss_pred HHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecC
Q 024032 187 VHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDA 248 (273)
Q Consensus 187 qkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~ 248 (273)
||||. |+ +.+|++|||||||+|||+. +.++++.+ +.|||++ .+||++++|++|++++.|+
T Consensus 152 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~--~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~ 229 (251)
T PRK14270 152 QQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK--EYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNK 229 (251)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCC
Confidence 99986 33 7899999999999999999 33555544 5788888 5689999999999999999
Q ss_pred hhhhccChhh
Q 024032 249 TKRLFSAPGL 258 (273)
Q Consensus 249 ~~~l~~~~~l 258 (273)
+++++..+..
T Consensus 230 ~~~~~~~~~~ 239 (251)
T PRK14270 230 TEKIFLEPQK 239 (251)
T ss_pred HHHHhcCCCC
Confidence 9999876543
No 198
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1.9e-36 Score=295.27 Aligned_cols=178 Identities=13% Similarity=0.181 Sum_probs=146.4
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC------C
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------S 138 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------~ 138 (273)
+++++|++++|. ++++ |+++||+|.+|+++||+||||||||||+|+|+|+++ ++|+|.++|.++.. .
T Consensus 4 ~i~~~~l~~~~~--~~~~----l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~ 77 (501)
T PRK10762 4 LLQLKGIDKAFP--GVKA----LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQ 77 (501)
T ss_pred eEEEeeeEEEeC--CeEE----eeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHH
Confidence 689999999994 4567 999999999999999999999999999999999998 99999999998743 2
Q ss_pred CccEEEEeccchhhhccCCcccccccccC-----------CH----HHHHHHHHHhc---------ccCCHHHHHHH---
Q 024032 139 SHTITMYMEEHNVMRSLQSGFCVYDSRGF-----------NY----NRVHEGLEELS---------SWMSEGVHHNQ--- 191 (273)
Q Consensus 139 ~~~i~~v~q~~~~~~~~~~~~tv~en~~~-----------~~----~~~~~~l~~~~---------~~LSgGqkq~~--- 191 (273)
++.+++++|++.+ +..+||+||..+ +. +++.+.++.++ .+||||||||.
T Consensus 78 ~~~i~~v~q~~~~----~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la 153 (501)
T PRK10762 78 EAGIGIIHQELNL----IPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIA 153 (501)
T ss_pred hCCEEEEEcchhc----cCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHH
Confidence 4569999998765 445588887321 11 23556666665 68999999987
Q ss_pred Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhcc
Q 024032 192 RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFS 254 (273)
Q Consensus 192 r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~ 254 (273)
++ +.+|++|||||||++||+. +.++++.++ |.|||++ .+||++++|++|+++..|+++++..
T Consensus 154 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (501)
T PRK10762 154 KVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQ-GRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLTE 230 (501)
T ss_pred HHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCCH
Confidence 33 7899999999999999999 335666554 8899988 5689999999999999998887643
No 199
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.6e-36 Score=266.73 Aligned_cols=180 Identities=20% Similarity=0.321 Sum_probs=146.2
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC---CCccE
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---SSHTI 142 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---~~~~i 142 (273)
+++++++++|. ++++ ++++||++++|++++|+||||||||||+++|+|+++ ++|+|.++|+++.. .++.+
T Consensus 1 l~~~~l~~~~~--~~~i----l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i 74 (232)
T cd03300 1 IELENVSKFYG--GFVA----LDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPV 74 (232)
T ss_pred CEEEeEEEEeC--Ceee----eccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcce
Confidence 46899999984 4567 999999999999999999999999999999999999 99999999998753 34678
Q ss_pred EEEeccchhhhccCCcccccccccC-------C----HHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCC
Q 024032 143 TMYMEEHNVMRSLQSGFCVYDSRGF-------N----YNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDD 198 (273)
Q Consensus 143 ~~v~q~~~~~~~~~~~~tv~en~~~-------~----~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~ 198 (273)
++++|++.. +..+|+.+|..+ . .+.+.++++.++ ..||+||+||. |+ +.+|+
T Consensus 75 ~~~~q~~~~----~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~ 150 (232)
T cd03300 75 NTVFQNYAL----FPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPK 150 (232)
T ss_pred EEEeccccc----CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 999998775 334588887321 1 123445556554 67999999986 33 79999
Q ss_pred EEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 199 CALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 199 iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
++||||||+|||+. +.++++.++.|.|||++ ..||++++|++|++++.|++++++..+
T Consensus 151 llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~~ 222 (232)
T cd03300 151 VLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEEP 222 (232)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhCC
Confidence 99999999999999 33555555448899988 468999999999999999988887543
No 200
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=9.6e-37 Score=294.41 Aligned_cols=192 Identities=21% Similarity=0.228 Sum_probs=157.2
Q ss_pred CCceEEEEEEEEeecCC-----eeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeC--
Q 024032 64 DGLNELRHKFLSYRSGD-----FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSS-- 135 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~-----~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i-- 135 (273)
+..++++|+++.|...+ ..-.+.|+++|||++++||++||||+||||||||.|+|+|+++ ++|.|.++|.++
T Consensus 278 ~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~ 357 (539)
T COG1123 278 EPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDL 357 (539)
T ss_pred CceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCccccc
Confidence 45788999999998522 1101256999999999999999999999999999999999999 999999999873
Q ss_pred -----CCCCccEEEEeccchhhhccCCccccccccc--------C----CHHHHHHHHHHhc----------ccCCHHHH
Q 024032 136 -----GNSSHTITMYMEEHNVMRSLQSGFCVYDSRG--------F----NYNRVHEGLEELS----------SWMSEGVH 188 (273)
Q Consensus 136 -----~~~~~~i~~v~q~~~~~~~~~~~~tv~en~~--------~----~~~~~~~~l~~~~----------~~LSgGqk 188 (273)
...++++-++||++... +.+.+||.++.. . ..+++.+.++.++ .+||||||
T Consensus 358 ~~~~~~~~r~~~QmvFQdp~~S--LnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQr 435 (539)
T COG1123 358 TGGELRRLRRRIQMVFQDPYSS--LNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQR 435 (539)
T ss_pred ccchhhhhhhheEEEEeCcccc--cCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchh
Confidence 12456788999988642 345668887621 1 1234556666666 88999999
Q ss_pred HHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChh
Q 024032 189 HNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATK 250 (273)
Q Consensus 189 q~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~ 250 (273)
||. |+ +.+|++|++|||||+||+. ++++++.++.|.|.++| .+||||+||++|+|++.|+.+
T Consensus 436 QRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~~ 515 (539)
T COG1123 436 QRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTE 515 (539)
T ss_pred HHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCCHH
Confidence 987 44 7899999999999999999 66788888889999999 678999999999999999999
Q ss_pred hhccChh
Q 024032 251 RLFSAPG 257 (273)
Q Consensus 251 ~l~~~~~ 257 (273)
++++.|.
T Consensus 516 ~v~~~p~ 522 (539)
T COG1123 516 KVFENPQ 522 (539)
T ss_pred HHhcCCC
Confidence 9998754
No 201
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-36 Score=295.23 Aligned_cols=184 Identities=13% Similarity=0.163 Sum_probs=148.6
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc---CccEEEECCeeCCC----
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS---RSGLVLFAQTSSGN---- 137 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~---~~G~I~i~g~~i~~---- 137 (273)
.+++++|++++|. ++++ |+++||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|.++..
T Consensus 4 ~~l~~~nl~~~~~--~~~i----l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~ 77 (506)
T PRK13549 4 YLLEMKNITKTFG--GVKA----LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIR 77 (506)
T ss_pred ceEEEeeeEEEeC--CeEe----ecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHH
Confidence 3689999999984 4567 999999999999999999999999999999999987 49999999998753
Q ss_pred --CCccEEEEeccchhhhccCCcccccccccC----------C----HHHHHHHHHHhc---------ccCCHHHHHHH-
Q 024032 138 --SSHTITMYMEEHNVMRSLQSGFCVYDSRGF----------N----YNRVHEGLEELS---------SWMSEGVHHNQ- 191 (273)
Q Consensus 138 --~~~~i~~v~q~~~~~~~~~~~~tv~en~~~----------~----~~~~~~~l~~~~---------~~LSgGqkq~~- 191 (273)
.++.++|++|++.+ +..+|++||..+ + .+++.++++.++ .+||||||||.
T Consensus 78 ~~~~~~i~~v~q~~~~----~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~ 153 (506)
T PRK13549 78 DTERAGIAIIHQELAL----VKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVE 153 (506)
T ss_pred HHHHCCeEEEEecccc----CCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHH
Confidence 23569999999765 344588887321 1 124556677665 68999999987
Q ss_pred --Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhcc
Q 024032 192 --RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFS 254 (273)
Q Consensus 192 --r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~ 254 (273)
|+ +.+|++|||||||++||+. +.+.++.++ |.|||++ .+||++++|++|+++..|+++++..
T Consensus 154 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 232 (506)
T PRK13549 154 IAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAH-GIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMTE 232 (506)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCCH
Confidence 33 7899999999999999999 345566544 8899998 5689999999999999999887754
Q ss_pred ChhhH
Q 024032 255 APGLR 259 (273)
Q Consensus 255 ~~~l~ 259 (273)
...+.
T Consensus 233 ~~~~~ 237 (506)
T PRK13549 233 DDIIT 237 (506)
T ss_pred HHHHH
Confidence 33333
No 202
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=2.3e-36 Score=267.51 Aligned_cols=179 Identities=22% Similarity=0.302 Sum_probs=140.4
Q ss_pred eEEEEEEEEeecC-CeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CC
Q 024032 67 NELRHKFLSYRSG-DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SS 139 (273)
Q Consensus 67 i~~~~v~~~y~~g-~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~ 139 (273)
++++|+++.|..+ ++++ |+++||++++|++++|+||||||||||+++|+|+++ ++|+|.++|.++.. .+
T Consensus 1 l~i~~l~~~~~~~~~~~~----l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~ 76 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPI----LKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLR 76 (238)
T ss_pred CeEEEEEEecCCCCCccc----eeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHH
Confidence 4689999999643 2456 999999999999999999999999999999999999 99999999988743 24
Q ss_pred ccEEEEeccchhhhccCCcccccccccC-----CHHHHHHHH---------HHh-----------cccCCHHHHHHH---
Q 024032 140 HTITMYMEEHNVMRSLQSGFCVYDSRGF-----NYNRVHEGL---------EEL-----------SSWMSEGVHHNQ--- 191 (273)
Q Consensus 140 ~~i~~v~q~~~~~~~~~~~~tv~en~~~-----~~~~~~~~l---------~~~-----------~~~LSgGqkq~~--- 191 (273)
+.++|++|++.++ ..|++||..+ ..+.+.+.+ +.+ ..+|||||+||.
T Consensus 77 ~~i~~~~q~~~~~-----~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 151 (238)
T cd03249 77 SQIGLVSQEPVLF-----DGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIA 151 (238)
T ss_pred hhEEEECCchhhh-----hhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHH
Confidence 5699999987643 2488887422 122222221 221 157999999986
Q ss_pred Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 192 RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 192 r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
|+ +.+|++|||||||++||+. +.++.+. + |.|||++ ..||++++|++|++++.++.+++....
T Consensus 152 ~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~-g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~ 228 (238)
T cd03249 152 RALLRNPKILLLDEATSALDAESEKLVQEALDRAM-K-GRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQK 228 (238)
T ss_pred HHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhcC
Confidence 33 7899999999999999999 3344444 3 8899888 468999999999999999988886544
No 203
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-36 Score=270.79 Aligned_cols=183 Identities=19% Similarity=0.249 Sum_probs=145.9
Q ss_pred CCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc------CccEEEECCeeCC
Q 024032 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSG 136 (273)
Q Consensus 63 ~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~------~~G~I~i~g~~i~ 136 (273)
....++++|++++|. ++++ |+++||++++||++||+||||||||||+++|+|+++ ++|+|.++|+++.
T Consensus 17 ~~~~l~~~nl~~~~~--~~~i----l~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~ 90 (267)
T PRK14237 17 EEIALSTKDLHVYYG--KKEA----IKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDIN 90 (267)
T ss_pred CCeEEEEeeEEEEEC--Ceee----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcc
Confidence 445799999999994 4667 999999999999999999999999999999999984 6999999999874
Q ss_pred C-------CCccEEEEeccchhhhccCCcccccccccC--------CH----HHHHHHHHHhc-------------ccCC
Q 024032 137 N-------SSHTITMYMEEHNVMRSLQSGFCVYDSRGF--------NY----NRVHEGLEELS-------------SWMS 184 (273)
Q Consensus 137 ~-------~~~~i~~v~q~~~~~~~~~~~~tv~en~~~--------~~----~~~~~~l~~~~-------------~~LS 184 (273)
. .++.++|++|++.++ ..|+++|..+ .. +.+.++++.++ .+||
T Consensus 91 ~~~~~~~~~~~~i~~v~q~~~~~-----~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS 165 (267)
T PRK14237 91 RKEINVYEMRKHIGMVFQRPNPF-----AKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLS 165 (267)
T ss_pred cccCChHHHhcceEEEecCCccc-----cccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCC
Confidence 2 356799999987643 2488887422 11 22333444432 6799
Q ss_pred HHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeee
Q 024032 185 EGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPL 246 (273)
Q Consensus 185 gGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~ 246 (273)
|||+||. |+ +++|++|||||||++||+. +.++++. + +.|||++ .+||++++|++|++++.
T Consensus 166 ~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~ 243 (267)
T PRK14237 166 GGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-K-NYTIIIVTHNMQQAARASDYTAFFYLGDLIEY 243 (267)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-CCEEEEEecCHHHHHHhcCEEEEEECCEEEEe
Confidence 9999986 33 7899999999999999999 3345553 3 6888888 56899999999999999
Q ss_pred cChhhhccChhh
Q 024032 247 DATKRLFSAPGL 258 (273)
Q Consensus 247 g~~~~l~~~~~l 258 (273)
|++++++..+..
T Consensus 244 g~~~~~~~~~~~ 255 (267)
T PRK14237 244 DKTRNIFTNPKL 255 (267)
T ss_pred CCHHHHhcCCCc
Confidence 999999865543
No 204
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.5e-36 Score=293.14 Aligned_cols=189 Identities=18% Similarity=0.220 Sum_probs=153.1
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-C----ccEEEECCeeCCC--
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R----SGLVLFAQTSSGN-- 137 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~----~G~I~i~g~~i~~-- 137 (273)
.+++++|++++|...+.++ .+++||||+|.+||++||||.|||||||+.++|.|+++ . +|+|.++|+++..
T Consensus 4 ~lL~V~nL~v~~~~~~~~~--~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~ 81 (539)
T COG1123 4 PLLEVENLTVEFATDGGRV--PAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLS 81 (539)
T ss_pred ceEEEeceEEEEecCCcce--eeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCC
Confidence 3799999999998654443 34999999999999999999999999999999999998 6 8999999997642
Q ss_pred -------CCccEEEEeccchhhhccCCccccccc--------ccC----CHHHHHHHHHHhc-----------ccCCHHH
Q 024032 138 -------SSHTITMYMEEHNVMRSLQSGFCVYDS--------RGF----NYNRVHEGLEELS-----------SWMSEGV 187 (273)
Q Consensus 138 -------~~~~i~~v~q~~~~~~~~~~~~tv~en--------~~~----~~~~~~~~l~~~~-----------~~LSgGq 187 (273)
..++|+++||++... +.+.+||.+- ... ..+++.+.++.++ .+|||||
T Consensus 82 ~~~~r~~rg~~Ia~i~Q~p~~s--lnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~ 159 (539)
T COG1123 82 EREMRKLRGKRIAMIFQDPMTS--LNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGM 159 (539)
T ss_pred HHHHHHhccccEEEEecCchhh--cCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchH
Confidence 347899999998642 1222344332 111 2334555666665 6899999
Q ss_pred HHHHH----hcCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecCh
Q 024032 188 HHNQR----CLRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDAT 249 (273)
Q Consensus 188 kq~~r----~l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~ 249 (273)
|||.. ++.+|++||+||||++||+. ++++++.++.|+++|+| .+||||+||.+|++++.|++
T Consensus 160 rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~ 239 (539)
T COG1123 160 RQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPT 239 (539)
T ss_pred HHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCH
Confidence 99872 27899999999999999999 55778888889999999 67899999999999999999
Q ss_pred hhhccChh
Q 024032 250 KRLFSAPG 257 (273)
Q Consensus 250 ~~l~~~~~ 257 (273)
++++++|.
T Consensus 240 ~~i~~~p~ 247 (539)
T COG1123 240 EEILSNPQ 247 (539)
T ss_pred HHHHhccC
Confidence 99997653
No 205
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=9.5e-37 Score=298.84 Aligned_cols=193 Identities=21% Similarity=0.231 Sum_probs=153.3
Q ss_pred hhhhhhhccchhhhhhhhHHHHHHHhchhhhc----------cCCCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCC
Q 024032 29 FDECVKLKLDLPNVSTLTPRLRVLREMERLAL----------IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPV 98 (273)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~----------~~~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~G 98 (273)
+..+......++.+.++.+|+.++++.++... ....+.++++||+|+|+.+ +++ |+|+||++++|
T Consensus 287 ~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~-~~v----L~~isl~i~~G 361 (529)
T TIGR02868 287 FAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGVVPAAGALGLGKPTLELRDLSFGYPGS-PPV----LDGVSLDLPPG 361 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCcccCCCCceEEEEEEEEecCCC-Cce----eecceEEEcCC
Confidence 44555556677889999999999987654210 0112359999999999643 356 99999999999
Q ss_pred cEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC----CCccEEEEeccchhhhccCCcccccccc-----cCC
Q 024032 99 ITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN----SSHTITMYMEEHNVMRSLQSGFCVYDSR-----GFN 168 (273)
Q Consensus 99 e~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~----~~~~i~~v~q~~~~~~~~~~~~tv~en~-----~~~ 168 (273)
+++||+||||||||||+|+|+|+++ ++|+|.++|.++.+ +|+.+++|+|++.+ |+.|++||. ..+
T Consensus 362 ~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~l-----F~~TI~eNI~~g~~~~~ 436 (529)
T TIGR02868 362 ERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHL-----FDTTVRDNLRLGRPDAT 436 (529)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCccc-----ccccHHHHHhccCCCCC
Confidence 9999999999999999999999999 99999999998864 56789999999985 455999993 346
Q ss_pred HHHHHHHHHHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH--HHH-HHHHh-
Q 024032 169 YNRVHEGLEELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK--SSP-KYVLR- 220 (273)
Q Consensus 169 ~~~~~~~l~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~--~~l-~~l~~- 220 (273)
++++.++++.++ ..||||||||. |+ +++|++||||||||+||+. +.+ +.+.+
T Consensus 437 ~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~ 516 (529)
T TIGR02868 437 DEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAA 516 (529)
T ss_pred HHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHh
Confidence 677888887765 46999999986 55 8999999999999999999 222 22322
Q ss_pred cCCcEEEEcee
Q 024032 221 RVDFAMVVSNI 231 (273)
Q Consensus 221 ~~g~tiiiv~~ 231 (273)
..++|+|+|.|
T Consensus 517 ~~~~TvIiItH 527 (529)
T TIGR02868 517 LSGKTVVVITH 527 (529)
T ss_pred cCCCEEEEEec
Confidence 12789998844
No 206
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.1e-36 Score=267.47 Aligned_cols=179 Identities=20% Similarity=0.294 Sum_probs=142.7
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc------CccEEEECCeeCCC--
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSGN-- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~------~~G~I~i~g~~i~~-- 137 (273)
.++++|++++|+ ++++ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 4 ~l~~~~l~~~~~--~~~~----l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~ 77 (251)
T PRK14251 4 IISAKDVHLSYG--NYEA----LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSK 77 (251)
T ss_pred eEEEEeeEEEEC--Ceee----eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEccccc
Confidence 689999999984 4566 999999999999999999999999999999999984 59999999998742
Q ss_pred -----CCccEEEEeccchhhhccCCcccccccccC--------CH----HHHHHHHHHhc-------------ccCCHHH
Q 024032 138 -----SSHTITMYMEEHNVMRSLQSGFCVYDSRGF--------NY----NRVHEGLEELS-------------SWMSEGV 187 (273)
Q Consensus 138 -----~~~~i~~v~q~~~~~~~~~~~~tv~en~~~--------~~----~~~~~~l~~~~-------------~~LSgGq 187 (273)
.++.+++++|++.++ ..|+++|..+ .. +.+.++++.++ ..|||||
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~-----~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq 152 (251)
T PRK14251 78 MDLVELRKEVGMVFQQPTPF-----PFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQ 152 (251)
T ss_pred chHHHhhccEEEEecCCccC-----CCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHH
Confidence 356799999987643 3588887321 11 22334444322 5799999
Q ss_pred HHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecCh
Q 024032 188 HHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDAT 249 (273)
Q Consensus 188 kq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~ 249 (273)
+||. |+ +.+|++|||||||++||+. +.++++.+ +.|||++ .+||++++|++|+++..|++
T Consensus 153 ~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~ 230 (251)
T PRK14251 153 QQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH--QYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPT 230 (251)
T ss_pred HHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc--CCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCH
Confidence 9986 33 7899999999999999999 33455533 6888888 46899999999999999999
Q ss_pred hhhccChh
Q 024032 250 KRLFSAPG 257 (273)
Q Consensus 250 ~~l~~~~~ 257 (273)
++++..+.
T Consensus 231 ~~~~~~~~ 238 (251)
T PRK14251 231 EEMFIAPK 238 (251)
T ss_pred HHHHhCCC
Confidence 99876543
No 207
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-36 Score=272.22 Aligned_cols=180 Identities=22% Similarity=0.321 Sum_probs=143.0
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc------CccEEEECCeeCCC
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSGN 137 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~------~~G~I~i~g~~i~~ 137 (273)
...++++|++++|+ ++.+ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++..
T Consensus 11 ~~~l~i~nl~~~~~--~~~i----l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~ 84 (269)
T PRK14259 11 NIIISLQNVTISYG--TFEA----VKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYD 84 (269)
T ss_pred CceEEEEeEEEEEC--CEEE----EcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 45799999999984 4566 999999999999999999999999999999999974 68999999998641
Q ss_pred -------CCccEEEEeccchhhhccCCcccccccccC-------C---HHHHHHHHHHhc-------------ccCCHHH
Q 024032 138 -------SSHTITMYMEEHNVMRSLQSGFCVYDSRGF-------N---YNRVHEGLEELS-------------SWMSEGV 187 (273)
Q Consensus 138 -------~~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~---~~~~~~~l~~~~-------------~~LSgGq 187 (273)
.++.++|++|++.++ ..|++||..+ . .+.+.++++.++ .+|||||
T Consensus 85 ~~~~~~~~~~~i~~v~q~~~l~-----~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~ 159 (269)
T PRK14259 85 PRVDPVEVRRRIGMVFQQPNPF-----PKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQ 159 (269)
T ss_pred ccCCHHHHhhceEEEccCCccc-----hhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHH
Confidence 345799999988643 2388887421 1 123344455442 5699999
Q ss_pred HHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeC---------
Q 024032 188 HHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKA--------- 240 (273)
Q Consensus 188 kq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~--------- 240 (273)
|||. |+ +.+|++|||||||++||+. +.++++. + +.|||++ .+||++++|++
T Consensus 160 ~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~-~-~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g 237 (269)
T PRK14259 160 QQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELK-K-NFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGG 237 (269)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhcCEEEEEecccccccccc
Confidence 9986 33 7899999999999999999 3345553 3 6888888 56899999996
Q ss_pred --CeEeeecChhhhccCh
Q 024032 241 --GDSKPLDATKRLFSAP 256 (273)
Q Consensus 241 --G~i~~~g~~~~l~~~~ 256 (273)
|++++.|++++++..+
T Consensus 238 ~~g~~~~~~~~~~~~~~~ 255 (269)
T PRK14259 238 KVGYLVEFNETKKIFNSP 255 (269)
T ss_pred ccceEEEeCCHHHHHhCc
Confidence 6789999999998654
No 208
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=3.4e-36 Score=268.92 Aligned_cols=183 Identities=18% Similarity=0.173 Sum_probs=142.5
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCee-----CCC--
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTS-----SGN-- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~-----i~~-- 137 (273)
.++++|++++|+ +..+ |+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|++ +..
T Consensus 3 ~l~~~~l~~~~~--~~~~----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 76 (253)
T TIGR02323 3 LLQVSGLSKSYG--GGKG----CRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLS 76 (253)
T ss_pred eEEEeeeEEEeC--CceE----eecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCC
Confidence 689999999994 3456 999999999999999999999999999999999999 99999999876 532
Q ss_pred -------CCccEEEEeccchhhhccCCccccccccc------------CCHHHHHHHHHHhc----------ccCCHHHH
Q 024032 138 -------SSHTITMYMEEHNVMRSLQSGFCVYDSRG------------FNYNRVHEGLEELS----------SWMSEGVH 188 (273)
Q Consensus 138 -------~~~~i~~v~q~~~~~~~~~~~~tv~en~~------------~~~~~~~~~l~~~~----------~~LSgGqk 188 (273)
.++.+++++|++... +....++.+|.. ...+.+.+.++.++ ..|||||+
T Consensus 77 ~~~~~~~~~~~i~~~~q~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~ 154 (253)
T TIGR02323 77 EAERRRLMRTEWGFVHQNPRDG--LRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQ 154 (253)
T ss_pred HHHHHHhhhcceEEEEeCcccc--cCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHH
Confidence 124689999986421 123334444421 01234455555554 56999999
Q ss_pred HHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChh
Q 024032 189 HNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATK 250 (273)
Q Consensus 189 q~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~ 250 (273)
||. |+ +.+|++|||||||++||+. +.++++.++.|.|||++ ..||++++|++|+++..|+++
T Consensus 155 qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~~~ 234 (253)
T TIGR02323 155 QRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTD 234 (253)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECCHH
Confidence 986 33 7999999999999999999 33455544448899999 468999999999999999999
Q ss_pred hhccCh
Q 024032 251 RLFSAP 256 (273)
Q Consensus 251 ~l~~~~ 256 (273)
++...+
T Consensus 235 ~~~~~~ 240 (253)
T TIGR02323 235 QVLDDP 240 (253)
T ss_pred HHhcCC
Confidence 887543
No 209
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-36 Score=267.84 Aligned_cols=178 Identities=17% Similarity=0.256 Sum_probs=142.1
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc------CccEEEECCeeCCC--
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSGN-- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~------~~G~I~i~g~~i~~-- 137 (273)
+++++|+++.|. ++++ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~~--~~~~----l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~ 76 (250)
T PRK14262 3 IIEIENFSAYYG--EKKA----VKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQ 76 (250)
T ss_pred eEEEEeeEEEeC--Ccee----EeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccch
Confidence 689999999994 4566 999999999999999999999999999999999975 68999999988742
Q ss_pred -----CCccEEEEeccchhhhccCCcccccccccC--------CH----HHHHHHHHHhc-------------ccCCHHH
Q 024032 138 -----SSHTITMYMEEHNVMRSLQSGFCVYDSRGF--------NY----NRVHEGLEELS-------------SWMSEGV 187 (273)
Q Consensus 138 -----~~~~i~~v~q~~~~~~~~~~~~tv~en~~~--------~~----~~~~~~l~~~~-------------~~LSgGq 187 (273)
.++.+++++|++.++ ..|+++|..+ .. +.+.++++.++ ..|||||
T Consensus 77 ~~~~~~~~~i~~~~q~~~~~-----~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq 151 (250)
T PRK14262 77 LDVTEYRKKVGMVFQKPTPF-----PMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQ 151 (250)
T ss_pred hhHHHhhhhEEEEecCCccC-----cccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHH
Confidence 356799999987643 2588887321 11 12333444332 6799999
Q ss_pred HHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecCh
Q 024032 188 HHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDAT 249 (273)
Q Consensus 188 kq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~ 249 (273)
+||. |+ +.+|++|||||||++||+. +.++++.+ +.|||++ .+||++++|++|+++..|++
T Consensus 152 ~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~ 229 (250)
T PRK14262 152 QQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE--NYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPT 229 (250)
T ss_pred HHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc--CcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCH
Confidence 9986 33 7899999999999999999 33445543 6888888 56899999999999999999
Q ss_pred hhhccCh
Q 024032 250 KRLFSAP 256 (273)
Q Consensus 250 ~~l~~~~ 256 (273)
+++...+
T Consensus 230 ~~~~~~~ 236 (250)
T PRK14262 230 REIVERP 236 (250)
T ss_pred HHHHhCC
Confidence 9987544
No 210
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-36 Score=268.11 Aligned_cols=179 Identities=16% Similarity=0.227 Sum_probs=141.9
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-C-----ccEEEECCeeCCC--
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R-----SGLVLFAQTSSGN-- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~-----~G~I~i~g~~i~~-- 137 (273)
+++++|++++|. ++++ |+++||+|++||+++|+||||||||||+|+|+|+++ + +|+|.++|.++..
T Consensus 4 ~l~~~~l~~~~~--~~~~----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~ 77 (252)
T PRK14272 4 LLSAQDVNIYYG--DKQA----VKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPR 77 (252)
T ss_pred EEEEeeeEEEEC--CEEe----eccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCc
Confidence 588999999984 4567 999999999999999999999999999999999986 4 7999999998742
Q ss_pred -----CCccEEEEeccchhhhccCCcccccccccC--------CHHH----HHHHHHHh-------------cccCCHHH
Q 024032 138 -----SSHTITMYMEEHNVMRSLQSGFCVYDSRGF--------NYNR----VHEGLEEL-------------SSWMSEGV 187 (273)
Q Consensus 138 -----~~~~i~~v~q~~~~~~~~~~~~tv~en~~~--------~~~~----~~~~l~~~-------------~~~LSgGq 187 (273)
.++.++|++|++.+ +...|+.||... ..+. +.+.++.+ ...|||||
T Consensus 78 ~~~~~~~~~i~~~~q~~~~----~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~ 153 (252)
T PRK14272 78 VDPVAMRRRVGMVFQKPNP----FPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQ 153 (252)
T ss_pred cCHHHhhceeEEEeccCcc----CcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHH
Confidence 34579999999775 344588887321 1221 22222222 16799999
Q ss_pred HHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecCh
Q 024032 188 HHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDAT 249 (273)
Q Consensus 188 kq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~ 249 (273)
+||. |+ +++|++|||||||++||+. +.++++. + +.|||++ .+||++++|++|++++.|++
T Consensus 154 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~ 231 (252)
T PRK14272 154 QQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLK-K-VTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPT 231 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9986 33 7899999999999999999 3345554 3 6888888 46899999999999999999
Q ss_pred hhhccCh
Q 024032 250 KRLFSAP 256 (273)
Q Consensus 250 ~~l~~~~ 256 (273)
++++..+
T Consensus 232 ~~~~~~~ 238 (252)
T PRK14272 232 DQLFTNP 238 (252)
T ss_pred HHHHhCc
Confidence 9987654
No 211
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-36 Score=269.49 Aligned_cols=179 Identities=20% Similarity=0.289 Sum_probs=142.5
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc------CccEEEECCeeCC---
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSG--- 136 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~------~~G~I~i~g~~i~--- 136 (273)
.++++|++++|. ++.+ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++.
T Consensus 4 ~l~i~~v~~~~~--~~~~----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~ 77 (258)
T PRK14241 4 RIDVKDLNIYYG--SFHA----VEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPG 77 (258)
T ss_pred cEEEeeEEEEEC--CEee----eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccc
Confidence 689999999984 3556 999999999999999999999999999999999985 4999999998863
Q ss_pred ----CCCccEEEEeccchhhhccCCcccccccccC--------CH----HHHHHHHHHhc-------------ccCCHHH
Q 024032 137 ----NSSHTITMYMEEHNVMRSLQSGFCVYDSRGF--------NY----NRVHEGLEELS-------------SWMSEGV 187 (273)
Q Consensus 137 ----~~~~~i~~v~q~~~~~~~~~~~~tv~en~~~--------~~----~~~~~~l~~~~-------------~~LSgGq 187 (273)
..++.+++++|++.++ ...|+++|..+ .. +.+.++++.++ .+|||||
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~----~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~ 153 (258)
T PRK14241 78 VDPVAVRRTIGMVFQRPNPF----PTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQ 153 (258)
T ss_pred cChHHHhcceEEEccccccC----CCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHH
Confidence 1346799999987753 34588887321 11 22344444432 6799999
Q ss_pred HHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEe------CCeE
Q 024032 188 HHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALK------AGDS 243 (273)
Q Consensus 188 kq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~------~G~i 243 (273)
+||. |+ +.+|++|||||||++||+. +.++++. + +.|||++ .+||++++|+ +|++
T Consensus 154 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i 231 (258)
T PRK14241 154 QQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELK-Q-DYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRL 231 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEecCHHHHHHhCCEEEEEecccCCCCceE
Confidence 9987 33 7899999999999999999 3345554 3 6788888 5689999997 7999
Q ss_pred eeecChhhhccCh
Q 024032 244 KPLDATKRLFSAP 256 (273)
Q Consensus 244 ~~~g~~~~l~~~~ 256 (273)
++.|++++++..+
T Consensus 232 ~~~~~~~~~~~~~ 244 (258)
T PRK14241 232 VEIDDTEKIFSNP 244 (258)
T ss_pred EecCCHHHHHhCc
Confidence 9999999987654
No 212
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=2.2e-36 Score=266.20 Aligned_cols=175 Identities=20% Similarity=0.200 Sum_probs=139.3
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----C
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----S 138 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~ 138 (273)
..++++|++++|. ++++ ++++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++.. .
T Consensus 6 ~~i~~~~l~~~~~--~~~i----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~ 79 (225)
T PRK10247 6 PLLQLQNVGYLAG--DAKI----LNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIY 79 (225)
T ss_pred ceEEEeccEEeeC--Ccee----eeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHH
Confidence 3689999999984 4567 999999999999999999999999999999999998 99999999988753 3
Q ss_pred CccEEEEeccchhhhccCCcccccccccC---------CHHHHHHHHHHhc----------ccCCHHHHHHH---Hh-cC
Q 024032 139 SHTITMYMEEHNVMRSLQSGFCVYDSRGF---------NYNRVHEGLEELS----------SWMSEGVHHNQ---RC-LR 195 (273)
Q Consensus 139 ~~~i~~v~q~~~~~~~~~~~~tv~en~~~---------~~~~~~~~l~~~~----------~~LSgGqkq~~---r~-l~ 195 (273)
++.+++++|++.++ ..|++||..+ ..+.+.+.++.++ .+||+||+||. |+ ++
T Consensus 80 ~~~i~~~~q~~~l~-----~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~ 154 (225)
T PRK10247 80 RQQVSYCAQTPTLF-----GDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQF 154 (225)
T ss_pred HhccEEEecccccc-----cccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 46789999987643 3488887421 1234455666554 67999999986 33 79
Q ss_pred CCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEe-CCeEeeecChh
Q 024032 196 SDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALK-AGDSKPLDATK 250 (273)
Q Consensus 196 ~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~-~G~i~~~g~~~ 250 (273)
+|+++||||||++||+. +.++++.++.|.|||++ ..||++++|+ ++..+++|+++
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 155 MPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 99999999999999999 33555554448899888 4589999994 56666777654
No 213
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-36 Score=267.86 Aligned_cols=181 Identities=18% Similarity=0.233 Sum_probs=143.0
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-C-----ccEEEECCeeCC---
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R-----SGLVLFAQTSSG--- 136 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~-----~G~I~i~g~~i~--- 136 (273)
.++++|+++.|. ++.+ |+++||+|++||+++|+||||||||||+++|+|+++ . +|+|.++|.++.
T Consensus 3 ~l~~~~l~~~~~--~~~~----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~ 76 (249)
T PRK14253 3 KFNIENLDLFYG--ENQA----LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNI 76 (249)
T ss_pred eEEEeccEEEEC--Ceee----eecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEccccc
Confidence 588999999984 4566 999999999999999999999999999999999987 4 899999998874
Q ss_pred ---CCCccEEEEeccchhhhccCCcccccccccC-------C-H----HHHHHHHHHhc-------------ccCCHHHH
Q 024032 137 ---NSSHTITMYMEEHNVMRSLQSGFCVYDSRGF-------N-Y----NRVHEGLEELS-------------SWMSEGVH 188 (273)
Q Consensus 137 ---~~~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~-~----~~~~~~l~~~~-------------~~LSgGqk 188 (273)
..++.++|++|++.++ ..|+.+|..+ . . +.+.+.++.++ ..|||||+
T Consensus 77 ~~~~~~~~i~~~~q~~~~~-----~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~ 151 (249)
T PRK14253 77 DVADLRIKVGMVFQKPNPF-----PMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQ 151 (249)
T ss_pred chHHHHhheeEEecCCCcC-----cccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHH
Confidence 1356799999987643 2578777321 1 1 12233343332 57999999
Q ss_pred HHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChh
Q 024032 189 HNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATK 250 (273)
Q Consensus 189 q~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~ 250 (273)
||. |+ +.+|++|||||||+|||+. +.++++.+ +.|||++ .+||++++|++|+++..|+++
T Consensus 152 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~ 229 (249)
T PRK14253 152 QRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK--NYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQ 229 (249)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 986 33 7899999999999999999 34555544 5788888 568999999999999999999
Q ss_pred hhccChhhH
Q 024032 251 RLFSAPGLR 259 (273)
Q Consensus 251 ~l~~~~~l~ 259 (273)
++...+...
T Consensus 230 ~~~~~~~~~ 238 (249)
T PRK14253 230 VIFSNPKDD 238 (249)
T ss_pred HHHcCCCCh
Confidence 887654443
No 214
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=6.7e-36 Score=267.59 Aligned_cols=181 Identities=18% Similarity=0.205 Sum_probs=143.1
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-----CccEEEECCeeCCC---
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-----RSGLVLFAQTSSGN--- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-----~~G~I~i~g~~i~~--- 137 (273)
.++++|++++| ++++ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 4 ~l~~~~l~~~~---~~~i----l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~ 76 (254)
T PRK10418 4 QIELRNIALQA---AQPL----VHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCAL 76 (254)
T ss_pred EEEEeCeEEEe---ccce----ecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccccc
Confidence 68999999998 2456 999999999999999999999999999999999975 58999999998753
Q ss_pred CCccEEEEeccchh-hhccCCcccccccc-------cC--CHHHHHHHHHHhc------------ccCCHHHHHHH---H
Q 024032 138 SSHTITMYMEEHNV-MRSLQSGFCVYDSR-------GF--NYNRVHEGLEELS------------SWMSEGVHHNQ---R 192 (273)
Q Consensus 138 ~~~~i~~v~q~~~~-~~~~~~~~tv~en~-------~~--~~~~~~~~l~~~~------------~~LSgGqkq~~---r 192 (273)
.++.++|++|++.. + ....|+.+|. +. ..+.+.+.++.++ ..|||||+||. |
T Consensus 77 ~~~~i~~v~q~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~lar 153 (254)
T PRK10418 77 RGRKIATIMQNPRSAF---NPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIAL 153 (254)
T ss_pred ccceEEEEecCCcccc---CccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHH
Confidence 23569999999742 2 1123544431 11 2234556666654 56999999986 3
Q ss_pred h-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 193 C-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 193 ~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
+ +.+|++|||||||++||+. +.++++.++.|.|||++ .+||++++|++|+++..|+++++++.+
T Consensus 154 al~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~ 232 (254)
T PRK10418 154 ALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNAP 232 (254)
T ss_pred HHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCC
Confidence 3 7899999999999999999 34555655448899988 468999999999999999999987654
No 215
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=4e-36 Score=263.03 Aligned_cols=172 Identities=17% Similarity=0.232 Sum_probs=136.9
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CC
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SS 139 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~ 139 (273)
.++++|++++|+.+++++ |+++||++++|++++|+||||||||||+++|+|+++ ++|+|.++|.++.. .+
T Consensus 2 ~l~~~~l~~~~~~~~~~~----l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 77 (221)
T cd03244 2 DIEFKNVSLRYRPNLPPV----LKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLR 77 (221)
T ss_pred cEEEEEEEEecCCCCccc----ccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHh
Confidence 478999999996544456 999999999999999999999999999999999999 99999999998742 45
Q ss_pred ccEEEEeccchhhhccCCcccccccccC----CHHHHHHHHHHh--------------------cccCCHHHHHHH---H
Q 024032 140 HTITMYMEEHNVMRSLQSGFCVYDSRGF----NYNRVHEGLEEL--------------------SSWMSEGVHHNQ---R 192 (273)
Q Consensus 140 ~~i~~v~q~~~~~~~~~~~~tv~en~~~----~~~~~~~~l~~~--------------------~~~LSgGqkq~~---r 192 (273)
+.+++++|++.++ ..|++||... ..+++.++++.+ ...||+||+||. |
T Consensus 78 ~~i~~~~q~~~l~-----~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~lar 152 (221)
T cd03244 78 SRISIIPQDPVLF-----SGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLAR 152 (221)
T ss_pred hhEEEECCCCccc-----cchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHH
Confidence 6799999997742 3488887432 233333333322 167999999986 3
Q ss_pred h-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeEeeecC
Q 024032 193 C-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKAGDSKPLDA 248 (273)
Q Consensus 193 ~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~ 248 (273)
+ +.+|+++||||||++||+. +.++++.+ +.|||++ ..||++++|++|++++.|+
T Consensus 153 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 153 ALLRKSKILVLDEATASVDPETDALIQKTIREAFK--DCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC--CCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 3 7899999999999999999 23444432 6788888 4489999999999988765
No 216
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.9e-36 Score=266.07 Aligned_cols=179 Identities=18% Similarity=0.257 Sum_probs=141.6
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc------CccEEEECCeeCCC-
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSGN- 137 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~------~~G~I~i~g~~i~~- 137 (273)
..++++|++++|+ ++.+ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 5 ~~i~~~~l~~~~~--~~~~----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~ 78 (253)
T PRK14261 5 IILSTKNLNLWYG--EKHA----LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDS 78 (253)
T ss_pred ceEEEeeeEEEEC--Ceee----eeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccc
Confidence 3689999999984 4566 999999999999999999999999999999999864 27999999998743
Q ss_pred ------CCccEEEEeccchhhhccCCcccccccccC--------CH----HHHHHHHHHhc-------------ccCCHH
Q 024032 138 ------SSHTITMYMEEHNVMRSLQSGFCVYDSRGF--------NY----NRVHEGLEELS-------------SWMSEG 186 (273)
Q Consensus 138 ------~~~~i~~v~q~~~~~~~~~~~~tv~en~~~--------~~----~~~~~~l~~~~-------------~~LSgG 186 (273)
.++.++|++|++.++ ..||+||..+ .. +.+.++++.++ ..||+|
T Consensus 79 ~~~~~~~~~~i~~~~q~~~~~-----~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G 153 (253)
T PRK14261 79 GADVVALRRKIGMVFQRPNPF-----PKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGG 153 (253)
T ss_pred ccchhhhhceEEEEecCCccC-----cccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHH
Confidence 245689999988743 2388887322 11 12333343332 579999
Q ss_pred HHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecC
Q 024032 187 VHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDA 248 (273)
Q Consensus 187 qkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~ 248 (273)
|+||. |+ +.+|+++||||||+|||+. +.++.+.+ +.|||++ ..||++++|++|+++..|+
T Consensus 154 ~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~--~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~ 231 (253)
T PRK14261 154 QQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK--EYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDK 231 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh--CceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCC
Confidence 99986 33 7899999999999999999 33455544 5788888 5689999999999999999
Q ss_pred hhhhccCh
Q 024032 249 TKRLFSAP 256 (273)
Q Consensus 249 ~~~l~~~~ 256 (273)
+++++..+
T Consensus 232 ~~~~~~~~ 239 (253)
T PRK14261 232 TTQIFENP 239 (253)
T ss_pred HHHHHhCC
Confidence 99987544
No 217
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.1e-36 Score=270.20 Aligned_cols=183 Identities=18% Similarity=0.226 Sum_probs=145.2
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc------CccEEEECCeeCCC
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSGN 137 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~------~~G~I~i~g~~i~~ 137 (273)
...++++|++++|. ++++ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++..
T Consensus 23 ~~~l~~~nl~~~~~--~~~i----l~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~ 96 (272)
T PRK14236 23 QTALEVRNLNLFYG--DKQA----LFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYD 96 (272)
T ss_pred CcEEEEEEEEEEEC--CeeE----eeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcc
Confidence 45799999999994 4567 999999999999999999999999999999999975 59999999998742
Q ss_pred -------CCccEEEEeccchhhhccCCcccccccccC--------C----HHHHHHHHHHhc-------------ccCCH
Q 024032 138 -------SSHTITMYMEEHNVMRSLQSGFCVYDSRGF--------N----YNRVHEGLEELS-------------SWMSE 185 (273)
Q Consensus 138 -------~~~~i~~v~q~~~~~~~~~~~~tv~en~~~--------~----~~~~~~~l~~~~-------------~~LSg 185 (273)
.++.++|++|++.++ . .|+++|..+ . .+.+.++++.++ ..|||
T Consensus 97 ~~~~~~~~~~~i~~v~q~~~l~----~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~ 171 (272)
T PRK14236 97 KKVDVAELRRRVGMVFQRPNPF----P-KSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSG 171 (272)
T ss_pred cccCHHHHhccEEEEecCCccC----c-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCH
Confidence 356799999987643 2 378777321 1 122444444432 57999
Q ss_pred HHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeec
Q 024032 186 GVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLD 247 (273)
Q Consensus 186 Gqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g 247 (273)
||+||. |+ +++|++|||||||+|||+. +.++++.+ +.|||++ .+||++++|++|+++..|
T Consensus 172 Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g 249 (272)
T PRK14236 172 GQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS--KYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYG 249 (272)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCeEEEEeCCHHHHHhhCCEEEEEECCEEEecC
Confidence 999986 33 7899999999999999999 33555543 6788888 468999999999999999
Q ss_pred ChhhhccChhhH
Q 024032 248 ATKRLFSAPGLR 259 (273)
Q Consensus 248 ~~~~l~~~~~l~ 259 (273)
++++++..+...
T Consensus 250 ~~~~~~~~~~~~ 261 (272)
T PRK14236 250 DTDTLFTSPAKK 261 (272)
T ss_pred CHHHHhcCCCcH
Confidence 999987665443
No 218
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.7e-36 Score=266.85 Aligned_cols=181 Identities=17% Similarity=0.225 Sum_probs=142.4
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc------CccEEEECCeeCCC-
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSGN- 137 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~------~~G~I~i~g~~i~~- 137 (273)
.+++++|++++|. ++.+ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 4 ~~l~~~~l~~~~~--~~~~----l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~ 77 (252)
T PRK14255 4 KIITSSDVHLFYG--KFEA----LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAP 77 (252)
T ss_pred ceEEEEeEEEEEC--CeeE----EecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccc
Confidence 3689999999985 4567 999999999999999999999999999999999864 38999999998741
Q ss_pred ------CCccEEEEeccchhhhccCCcccccccccC--------CH----HHHHHHHHHhc-------------ccCCHH
Q 024032 138 ------SSHTITMYMEEHNVMRSLQSGFCVYDSRGF--------NY----NRVHEGLEELS-------------SWMSEG 186 (273)
Q Consensus 138 ------~~~~i~~v~q~~~~~~~~~~~~tv~en~~~--------~~----~~~~~~l~~~~-------------~~LSgG 186 (273)
.++.+++++|++.++ ..|+++|..+ .. +.+.+.++.++ .+||+|
T Consensus 78 ~~~~~~~~~~i~~~~q~~~~~-----~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G 152 (252)
T PRK14255 78 NEDVVQLRKQVGMVFQQPNPF-----PFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGG 152 (252)
T ss_pred cccHHHhcCeEEEEECCCccC-----CCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHH
Confidence 346799999987643 2478777321 11 12233333321 679999
Q ss_pred HHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecC
Q 024032 187 VHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDA 248 (273)
Q Consensus 187 qkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~ 248 (273)
|+||. |+ +.+|++|||||||++||+. +.++++.+ +.|||++ ..||++++|++|+++..|+
T Consensus 153 q~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~ 230 (252)
T PRK14255 153 QQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD--QYTIILVTHSMHQASRISDKTAFFLTGNLIEFAD 230 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh--CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99986 33 7899999999999999999 33455544 5788888 4689999999999999999
Q ss_pred hhhhccChhh
Q 024032 249 TKRLFSAPGL 258 (273)
Q Consensus 249 ~~~l~~~~~l 258 (273)
+.+++.++..
T Consensus 231 ~~~~~~~~~~ 240 (252)
T PRK14255 231 TKQMFLNPKE 240 (252)
T ss_pred HHHHhcCCCC
Confidence 9999876543
No 219
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=2.1e-36 Score=296.35 Aligned_cols=199 Identities=16% Similarity=0.150 Sum_probs=157.5
Q ss_pred hhhhhhhccchhhhhhhhHHHHHHHhchhhhc-----cC-CCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEE
Q 024032 29 FDECVKLKLDLPNVSTLTPRLRVLREMERLAL-----IA-PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITIL 102 (273)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-----~~-~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~a 102 (273)
+..+......++.+..+.+|+.++++.++... .. ..+.++++|++|+|+.+++++ |+++||++++|++++
T Consensus 277 l~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~i----l~~i~l~i~~G~~~~ 352 (529)
T TIGR02857 277 LRQLGADYHARADGVAAAEALFAVLDAPRPLAGKAPVTAAPAPSLEFSGLSVAYPGRRAPA----LRPVSFTVPPGERVA 352 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcCCCCCCCCeEEEEEEEEECCCCCccc----ccceeEEECCCCEEE
Confidence 34455556777888999999999987442211 00 123699999999997544567 999999999999999
Q ss_pred EEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCcccccccc-----cCCHHH
Q 024032 103 LMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSR-----GFNYNR 171 (273)
Q Consensus 103 ivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~-----~~~~~~ 171 (273)
|+||||||||||+|+|+|+++ ++|+|.++|.++.+ +++.+++++|++.+ |..|++||. ..++++
T Consensus 353 ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~l-----f~~ti~~Ni~~~~~~~~~~~ 427 (529)
T TIGR02857 353 LVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFL-----FAGTIAENIRLARPDASDAE 427 (529)
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcc-----cCcCHHHHHhccCCCCCHHH
Confidence 999999999999999999999 99999999998864 56789999999884 456999993 235667
Q ss_pred HHHHHHHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH--H----HHHHHHhc
Q 024032 172 VHEGLEELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK--S----SPKYVLRR 221 (273)
Q Consensus 172 ~~~~l~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~--~----~l~~l~~~ 221 (273)
+.++++.++ ..||||||||. |+ +++|+++||||||++||+. + .+..+.
T Consensus 428 i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-- 505 (529)
T TIGR02857 428 IRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA-- 505 (529)
T ss_pred HHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc--
Confidence 777776654 56999999986 44 8999999999999999999 2 233332
Q ss_pred CCcEEEEc-------eeCCEEEEE
Q 024032 222 VDFAMVVS-------NIAEIYKAL 238 (273)
Q Consensus 222 ~g~tiiiv-------~~ad~i~vl 238 (273)
.++|+|++ +.||+|++|
T Consensus 506 ~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 506 QGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred CCCEEEEEecCHHHHHhCCEEEeC
Confidence 27898888 458999875
No 220
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.1e-36 Score=264.28 Aligned_cols=177 Identities=16% Similarity=0.246 Sum_probs=139.9
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CC
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SS 139 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~ 139 (273)
.++++|++++|.. ++.+ |+++||++++|++++|+||||||||||+++|+|+++ ++|+|.++|.++.. .+
T Consensus 2 ~l~~~~l~~~~~~-~~~~----l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 76 (229)
T cd03254 2 EIEFENVNFSYDE-KKPV----LKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLR 76 (229)
T ss_pred eEEEEEEEEecCC-CCcc----ccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHh
Confidence 4789999999852 2346 999999999999999999999999999999999999 99999999988753 35
Q ss_pred ccEEEEeccchhhhccCCcccccccccC-----CHHHHHHHHHHh--------------------cccCCHHHHHHH---
Q 024032 140 HTITMYMEEHNVMRSLQSGFCVYDSRGF-----NYNRVHEGLEEL--------------------SSWMSEGVHHNQ--- 191 (273)
Q Consensus 140 ~~i~~v~q~~~~~~~~~~~~tv~en~~~-----~~~~~~~~l~~~--------------------~~~LSgGqkq~~--- 191 (273)
+.++|++|++.++ ..|+++|..+ ....+.++++.+ ...||||||||.
T Consensus 77 ~~i~~~~q~~~~~-----~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la 151 (229)
T cd03254 77 SMIGVVLQDTFLF-----SGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIA 151 (229)
T ss_pred hhEEEecCCchhh-----hhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHH
Confidence 6799999987643 2378877321 223333322221 157999999986
Q ss_pred Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhcc
Q 024032 192 RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFS 254 (273)
Q Consensus 192 r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~ 254 (273)
|+ +.+|++|||||||++||+. +.++.+. + +.|||++ ..||++++|++|+++..++.+++++
T Consensus 152 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 226 (229)
T cd03254 152 RAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-K-GRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLA 226 (229)
T ss_pred HHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-C-CCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 33 7899999999999999999 3344553 3 7899988 4589999999999999988877654
No 221
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=4.4e-36 Score=268.17 Aligned_cols=185 Identities=18% Similarity=0.195 Sum_probs=146.7
Q ss_pred EEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeCCC-----CCccE
Q 024032 68 ELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGN-----SSHTI 142 (273)
Q Consensus 68 ~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i~~-----~~~~i 142 (273)
+++|+++. .+ |+++||+|++|++++|+||||||||||+++|+|+++.+|+|.++|+++.. .++.+
T Consensus 2 ~~~~l~~~------~~----l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~i 71 (248)
T PRK03695 2 QLNDVAVS------TR----LGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWSAAELARHR 71 (248)
T ss_pred cccccchh------ce----ecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCeEEEECCEecCcCCHHHHhhhe
Confidence 46677763 14 99999999999999999999999999999999998888999999998753 23568
Q ss_pred EEEeccchhhhccCCcccccccccC------C----HHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cC----
Q 024032 143 TMYMEEHNVMRSLQSGFCVYDSRGF------N----YNRVHEGLEELS---------SWMSEGVHHNQ---RC-LR---- 195 (273)
Q Consensus 143 ~~v~q~~~~~~~~~~~~tv~en~~~------~----~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~---- 195 (273)
+|++|++.. ++.+|+++|..+ . .+.+.++++.++ ..||||||||. ++ +.
T Consensus 72 ~~v~q~~~~----~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~ 147 (248)
T PRK03695 72 AYLSQQQTP----PFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPD 147 (248)
T ss_pred EEecccCcc----CCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccc
Confidence 999998764 344578876321 1 224556666655 77999999986 33 44
Q ss_pred ---CCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChhh
Q 024032 196 ---SDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPGL 258 (273)
Q Consensus 196 ---~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~l 258 (273)
+|++|||||||++||+. +.++++.++ |.|||++ .+||++++|++|++++.|+++++...+.+
T Consensus 148 ~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~-~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~ 226 (248)
T PRK03695 148 INPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQ-GIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLTPENL 226 (248)
T ss_pred cCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhCchHH
Confidence 67999999999999999 345555544 8899998 56899999999999999999998877777
Q ss_pred HHHhCCceE
Q 024032 259 RKCSKISFC 267 (273)
Q Consensus 259 ~~~~~~~~~ 267 (273)
.+.|+.+..
T Consensus 227 ~~~~~~~~~ 235 (248)
T PRK03695 227 AQVFGVNFR 235 (248)
T ss_pred HHHhCCCeE
Confidence 888886544
No 222
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=2.6e-36 Score=284.92 Aligned_cols=170 Identities=22% Similarity=0.280 Sum_probs=139.2
Q ss_pred CCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCe----eCCC--------C-CccEEE
Q 024032 79 GDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQT----SSGN--------S-SHTITM 144 (273)
Q Consensus 79 g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~----~i~~--------~-~~~i~~ 144 (273)
+...+ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|+++|+ ++.. . ++.++|
T Consensus 35 g~~~~----l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~ 110 (382)
T TIGR03415 35 GLVVG----VANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSM 110 (382)
T ss_pred CCEEE----EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEE
Confidence 44555 999999999999999999999999999999999999 9999999996 3321 1 257999
Q ss_pred EeccchhhhccCCccccccccc-------CCH----HHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCCEE
Q 024032 145 YMEEHNVMRSLQSGFCVYDSRG-------FNY----NRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDDCA 200 (273)
Q Consensus 145 v~q~~~~~~~~~~~~tv~en~~-------~~~----~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~iL 200 (273)
++|++.+++ .+|++||.. .+. +.+.++++.++ .+||||||||. |+ +.+|++|
T Consensus 111 vfQ~~~l~p----~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~IL 186 (382)
T TIGR03415 111 VFQKFALMP----WLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADIL 186 (382)
T ss_pred EECCCcCCC----CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 999988643 459999842 222 34556677666 67999999987 33 7899999
Q ss_pred EEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 201 LMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 201 lLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
||||||++||+. +.+.++.++.++|||++ ++||+|++|++|++++.|++++++..+
T Consensus 187 LlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p 256 (382)
T TIGR03415 187 LMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNP 256 (382)
T ss_pred EEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCc
Confidence 999999999999 33555655558999999 568999999999999999999998654
No 223
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=5.9e-36 Score=270.30 Aligned_cols=183 Identities=16% Similarity=0.175 Sum_probs=145.5
Q ss_pred ceEEEEEEEEeecC-------CeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC
Q 024032 66 LNELRHKFLSYRSG-------DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g-------~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~ 137 (273)
+++++|+++.|..+ ++++ |+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|.++..
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~i----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~ 78 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTV----LNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAK 78 (268)
T ss_pred eEEEeceEEEecCCccccccCceee----EeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccc
Confidence 58999999999631 3566 999999999999999999999999999999999998 99999999998753
Q ss_pred --------CCccEEEEeccchhhhccCCccccccccc--------CCH----HHHHHHHHHhc----------ccCCHHH
Q 024032 138 --------SSHTITMYMEEHNVMRSLQSGFCVYDSRG--------FNY----NRVHEGLEELS----------SWMSEGV 187 (273)
Q Consensus 138 --------~~~~i~~v~q~~~~~~~~~~~~tv~en~~--------~~~----~~~~~~l~~~~----------~~LSgGq 187 (273)
.++.++|++|++... +....|+.+|.. ... ..+.+.++.++ ..||+||
T Consensus 79 ~~~~~~~~~~~~i~~v~q~~~~~--~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge 156 (268)
T PRK10419 79 LNRAQRKAFRRDIQMVFQDSISA--VNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQ 156 (268)
T ss_pred cChhHHHHHHhcEEEEEcChhhc--cCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHH
Confidence 346799999987421 123346666521 111 23455565544 5699999
Q ss_pred HHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecCh
Q 024032 188 HHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDAT 249 (273)
Q Consensus 188 kq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~ 249 (273)
+||. |+ +.+|++|||||||++||+. +.++++.++.+.|+|++ .+||++++|++|++++.|++
T Consensus 157 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~ 236 (268)
T PRK10419 157 LQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPV 236 (268)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCCh
Confidence 9986 33 7999999999999999998 34556655447899888 46899999999999999999
Q ss_pred hhhcc
Q 024032 250 KRLFS 254 (273)
Q Consensus 250 ~~l~~ 254 (273)
++++.
T Consensus 237 ~~~~~ 241 (268)
T PRK10419 237 GDKLT 241 (268)
T ss_pred hhccC
Confidence 99863
No 224
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8e-36 Score=264.23 Aligned_cols=179 Identities=16% Similarity=0.262 Sum_probs=144.8
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC---CCccE
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---SSHTI 142 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---~~~~i 142 (273)
++++++++.|. + ++ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++.. .++.+
T Consensus 1 l~~~~l~~~~~--~-~~----l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i 73 (235)
T cd03299 1 LKVENLSKDWK--E-FK----LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDI 73 (235)
T ss_pred CeeEeEEEEeC--C-ce----eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCE
Confidence 46899999984 2 25 999999999999999999999999999999999999 99999999998754 34679
Q ss_pred EEEeccchhhhccCCcccccccccC-------C----HHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCC
Q 024032 143 TMYMEEHNVMRSLQSGFCVYDSRGF-------N----YNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDD 198 (273)
Q Consensus 143 ~~v~q~~~~~~~~~~~~tv~en~~~-------~----~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~ 198 (273)
++++|++.+ +..+|+.||..+ . .+.+.++++.++ ..|||||+||. |+ +.+|+
T Consensus 74 ~~~~q~~~~----~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ 149 (235)
T cd03299 74 SYVPQNYAL----FPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPK 149 (235)
T ss_pred EEEeecCcc----CCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCC
Confidence 999998765 334588887321 1 123445566655 57999999986 33 78999
Q ss_pred EEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 199 CALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 199 iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
+++|||||+|||+. +.++++.++.|.|||++ ..||++++|++|++++.|+++++.+.+
T Consensus 150 llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 221 (235)
T cd03299 150 ILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKKP 221 (235)
T ss_pred EEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhCc
Confidence 99999999999999 33455554448899888 468999999999999999998887653
No 225
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=3.4e-36 Score=254.87 Aligned_cols=150 Identities=17% Similarity=0.232 Sum_probs=126.3
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCc
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSH 140 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~ 140 (273)
++++|++++|+.+..++ ++++||++++||+++|+||||||||||+++|+|+++ ++|+|.++|.++.. .++
T Consensus 1 i~~~~l~~~~~~~~~~~----l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (173)
T cd03246 1 LEVENVSFRYPGAEPPV----LRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGD 76 (173)
T ss_pred CEEEEEEEEcCCCCCcc----eeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHh
Confidence 47899999996433446 999999999999999999999999999999999999 99999999998753 356
Q ss_pred cEEEEeccchhhhccCCcccccccccCCHHHHHHHHHHhcccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH----
Q 024032 141 TITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK---- 212 (273)
Q Consensus 141 ~i~~v~q~~~~~~~~~~~~tv~en~~~~~~~~~~~l~~~~~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~---- 212 (273)
.+++++|++.++ ..|++||. |||||+||. |+ +.+|++|||||||++||+.
T Consensus 77 ~i~~~~q~~~~~-----~~tv~~~l-----------------LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~ 134 (173)
T cd03246 77 HVGYLPQDDELF-----SGSIAENI-----------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERA 134 (173)
T ss_pred heEEECCCCccc-----cCcHHHHC-----------------cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHH
Confidence 799999987642 24888765 999999986 33 7999999999999999999
Q ss_pred --HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeE
Q 024032 213 --SSPKYVLRRVDFAMVVS-------NIAEIYKALKAGDS 243 (273)
Q Consensus 213 --~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i 243 (273)
+.++++.++ |.|||++ ..||++++|++|++
T Consensus 135 l~~~l~~~~~~-~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 135 LNQAIAALKAA-GATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred HHHHHHHHHhC-CCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 345555544 8899988 56899999999974
No 226
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-36 Score=299.49 Aligned_cols=186 Identities=19% Similarity=0.222 Sum_probs=149.9
Q ss_pred CceEEEEEEEEeecC---------CeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCee
Q 024032 65 GLNELRHKFLSYRSG---------DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTS 134 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g---------~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~ 134 (273)
.+++++|++++|..+ +..+ |+++||+|++||++||+||||||||||+++|+|+++ ++|+|+++|++
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~----l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~ 387 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHA----VEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQR 387 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEE----EeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEE
Confidence 479999999999521 1345 999999999999999999999999999999999999 99999999998
Q ss_pred CCC--------CCccEEEEeccchhhhccCCccccccccc-------C-CH----HHHHHHHHHhc----------ccCC
Q 024032 135 SGN--------SSHTITMYMEEHNVMRSLQSGFCVYDSRG-------F-NY----NRVHEGLEELS----------SWMS 184 (273)
Q Consensus 135 i~~--------~~~~i~~v~q~~~~~~~~~~~~tv~en~~-------~-~~----~~~~~~l~~~~----------~~LS 184 (273)
+.. .++.++|++|++.. .+...+||.+|.. . .. +++.+.++.++ .+||
T Consensus 388 i~~~~~~~~~~~~~~i~~v~Q~~~~--~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LS 465 (623)
T PRK10261 388 IDTLSPGKLQALRRDIQFIFQDPYA--SLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFS 465 (623)
T ss_pred CCcCCHHHHHHhcCCeEEEecCchh--hcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCC
Confidence 743 24579999998731 0234458877631 1 11 24556666655 6899
Q ss_pred HHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeee
Q 024032 185 EGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPL 246 (273)
Q Consensus 185 gGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~ 246 (273)
||||||+ |+ +.+|++|||||||++||+. +++++++++.|.|||+| .+||+|++|++|++++.
T Consensus 466 gGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~ 545 (623)
T PRK10261 466 GGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEI 545 (623)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999987 33 7899999999999999999 34566665558999999 56899999999999999
Q ss_pred cChhhhccCh
Q 024032 247 DATKRLFSAP 256 (273)
Q Consensus 247 g~~~~l~~~~ 256 (273)
|++++++.++
T Consensus 546 g~~~~i~~~p 555 (623)
T PRK10261 546 GPRRAVFENP 555 (623)
T ss_pred cCHHHHhcCC
Confidence 9999998654
No 227
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.8e-36 Score=267.26 Aligned_cols=180 Identities=17% Similarity=0.224 Sum_probs=142.5
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc------CccEEEECCeeCCC---
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSGN--- 137 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~------~~G~I~i~g~~i~~--- 137 (273)
-+++|+++.|. ++++ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 6 ~~~~~l~~~~~--~~~~----l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 79 (251)
T PRK14244 6 ASVKNLNLWYG--SKQI----LFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDT 79 (251)
T ss_pred EEeeeEEEEEC--Ceee----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhccc
Confidence 47899999884 4566 999999999999999999999999999999999974 49999999988642
Q ss_pred ----CCccEEEEeccchhhhccCCcccccccccC---------C----HHHHHHHHHHhc-------------ccCCHHH
Q 024032 138 ----SSHTITMYMEEHNVMRSLQSGFCVYDSRGF---------N----YNRVHEGLEELS-------------SWMSEGV 187 (273)
Q Consensus 138 ----~~~~i~~v~q~~~~~~~~~~~~tv~en~~~---------~----~~~~~~~l~~~~-------------~~LSgGq 187 (273)
.++.++|++|++.+++ .|+.+|..+ . .+.+.++++.++ ..|||||
T Consensus 80 ~~~~~~~~i~~v~q~~~~~~-----~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq 154 (251)
T PRK14244 80 NVVLLRAKVGMVFQKPNPFP-----KSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQ 154 (251)
T ss_pred chHHHhhhEEEEecCccccc-----CCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHH
Confidence 3567999999976532 377776321 1 122344555543 4699999
Q ss_pred HHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecCh
Q 024032 188 HHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDAT 249 (273)
Q Consensus 188 kq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~ 249 (273)
|||. |+ +.+|++|||||||++||+. +.++++. + +.|||++ .+||++++|++|++++.|++
T Consensus 155 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~ 232 (251)
T PRK14244 155 QQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-K-NFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTT 232 (251)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCH
Confidence 9986 33 7899999999999999999 3345553 3 7899888 56899999999999999999
Q ss_pred hhhccChhhH
Q 024032 250 KRLFSAPGLR 259 (273)
Q Consensus 250 ~~l~~~~~l~ 259 (273)
++++..+...
T Consensus 233 ~~~~~~~~~~ 242 (251)
T PRK14244 233 QEIFKNPQSS 242 (251)
T ss_pred HHHhcCCCCh
Confidence 9998765443
No 228
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.6e-36 Score=261.00 Aligned_cols=171 Identities=15% Similarity=0.121 Sum_probs=135.4
Q ss_pred ceEEEEEEEEeecC--CeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc----CccEEEECCeeCCC--
Q 024032 66 LNELRHKFLSYRSG--DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS----RSGLVLFAQTSSGN-- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g--~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~----~~G~I~i~g~~i~~-- 137 (273)
.+.++|++|.|+.+ ++++ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~i----l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~ 78 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPI----LKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA 78 (202)
T ss_pred eEEEEccEEEeccCCCCcee----eeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch
Confidence 57899999999865 4556 999999999999999999999999999999999986 59999999998753
Q ss_pred --CCccEEEEeccchhhhccCCcccccccccCCHHHHHHHHHHhcccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCH
Q 024032 138 --SSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDL 211 (273)
Q Consensus 138 --~~~~i~~v~q~~~~~~~~~~~~tv~en~~~~~~~~~~~l~~~~~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~ 211 (273)
.++.+++++|++.. ++.+||++|..+... .. .+.....||+||+||. |+ +++|++|||||||++||+
T Consensus 79 ~~~~~~i~~~~q~~~~----~~~~tv~~~l~~~~~-~~--~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~ 151 (202)
T cd03233 79 EKYPGEIIYVSEEDVH----FPTLTVRETLDFALR-CK--GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDS 151 (202)
T ss_pred hhhcceEEEEeccccc----CCCCcHHHHHhhhhh-hc--cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCH
Confidence 45679999998764 445699998543211 10 2333378999999986 33 789999999999999999
Q ss_pred H------HHHHHHHhcCCcEEEEc---------eeCCEEEEEeCCeEeeec
Q 024032 212 K------SSPKYVLRRVDFAMVVS---------NIAEIYKALKAGDSKPLD 247 (273)
Q Consensus 212 ~------~~l~~l~~~~g~tiiiv---------~~ad~i~vl~~G~i~~~g 247 (273)
. +.++++.++.+.|++++ ..||++++|++|+++..|
T Consensus 152 ~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 152 STALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 9 33555655435665554 458999999999998654
No 229
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=7.1e-36 Score=259.33 Aligned_cols=173 Identities=14% Similarity=0.189 Sum_probs=139.3
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----C
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----S 138 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~ 138 (273)
+.+++++++++|+.....+ |+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|.++.. .
T Consensus 5 ~~l~~~~l~~~~~~~~~~~----l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 80 (207)
T cd03369 5 GEIEVENLSVRYAPDLPPV----LKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDL 80 (207)
T ss_pred CeEEEEEEEEEeCCCCccc----ccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHH
Confidence 4689999999996433456 999999999999999999999999999999999999 99999999998742 3
Q ss_pred CccEEEEeccchhhhccCCccccccccc----CCHHHHHHHHHHhc---ccCCHHHHHHH---Hh-cCCCCEEEEcCcCC
Q 024032 139 SHTITMYMEEHNVMRSLQSGFCVYDSRG----FNYNRVHEGLEELS---SWMSEGVHHNQ---RC-LRSDDCALMKNDAE 207 (273)
Q Consensus 139 ~~~i~~v~q~~~~~~~~~~~~tv~en~~----~~~~~~~~~l~~~~---~~LSgGqkq~~---r~-l~~p~iLlLDEPts 207 (273)
++.++|++|++.+ +..|+++|.. ...+++.++++ +. ..|||||+||. |+ +.+|++|||||||+
T Consensus 81 ~~~i~~v~q~~~~-----~~~tv~~~l~~~~~~~~~~~~~~l~-~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~ 154 (207)
T cd03369 81 RSSLTIIPQDPTL-----FSGTIRSNLDPFDEYSDEEIYGALR-VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATA 154 (207)
T ss_pred HhhEEEEecCCcc-----cCccHHHHhcccCCCCHHHHHHHhh-ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcc
Confidence 5679999999864 2348888743 23344455554 33 78999999986 33 78999999999999
Q ss_pred CCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeEeeecCh
Q 024032 208 IDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKAGDSKPLDAT 249 (273)
Q Consensus 208 ~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~ 249 (273)
+||+. +.++++. + |.|+|++ ..||++++|++|++++.|++
T Consensus 155 ~LD~~~~~~l~~~l~~~~-~-~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 155 SIDYATDALIQKTIREEF-T-NSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred cCCHHHHHHHHHHHHHhc-C-CCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 99999 3344443 3 7898888 34899999999999887753
No 230
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.7e-36 Score=270.44 Aligned_cols=182 Identities=18% Similarity=0.277 Sum_probs=143.2
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc------CccEEEECCeeCCC
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSGN 137 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~------~~G~I~i~g~~i~~ 137 (273)
..+++++|+++.|. ++++ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 18 ~~~l~~~nl~~~~~--~~~~----l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~ 91 (274)
T PRK14265 18 HSVFEVEGVKVFYG--GFLA----LVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYD 91 (274)
T ss_pred CceEEEeeEEEEeC--CeEE----EeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEeccc
Confidence 34799999999984 4566 999999999999999999999999999999999975 38999999998741
Q ss_pred -------CCccEEEEeccchhhhccCCcccccccccCC----------HHHHHHHHHHhc-------------ccCCHHH
Q 024032 138 -------SSHTITMYMEEHNVMRSLQSGFCVYDSRGFN----------YNRVHEGLEELS-------------SWMSEGV 187 (273)
Q Consensus 138 -------~~~~i~~v~q~~~~~~~~~~~~tv~en~~~~----------~~~~~~~l~~~~-------------~~LSgGq 187 (273)
.++.++|++|++.++ ..|+.+|..+. .+.+.++++.++ ..|||||
T Consensus 92 ~~~~~~~~~~~i~~v~q~~~l~-----~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq 166 (274)
T PRK14265 92 SQINSVKLRRQVGMVFQRPNPF-----PKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQ 166 (274)
T ss_pred ccchhHHHhhcEEEEccCCccc-----cccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHH
Confidence 356799999987643 23777774221 112233333321 6699999
Q ss_pred HHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEe---------C
Q 024032 188 HHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALK---------A 240 (273)
Q Consensus 188 kq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~---------~ 240 (273)
+||. |+ +.+|++|||||||++||+. +.++++.+ +.|||++ .+||++++|+ +
T Consensus 167 ~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~ 244 (274)
T PRK14265 167 QQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE--QYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRR 244 (274)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhCCEEEEEecccccccccC
Confidence 9987 33 7899999999999999999 33455543 6788888 5689999997 8
Q ss_pred CeEeeecChhhhccChhh
Q 024032 241 GDSKPLDATKRLFSAPGL 258 (273)
Q Consensus 241 G~i~~~g~~~~l~~~~~l 258 (273)
|++++.|++++++.++..
T Consensus 245 G~~~~~g~~~~~~~~~~~ 262 (274)
T PRK14265 245 GKLVEFSPTEQMFGSPQT 262 (274)
T ss_pred ceEEEeCCHHHHHhCCCC
Confidence 999999999999866543
No 231
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=3.3e-36 Score=255.90 Aligned_cols=156 Identities=19% Similarity=0.196 Sum_probs=129.5
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC----CCcc
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN----SSHT 141 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~----~~~~ 141 (273)
+++++++++|...+.++ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++.. .++.
T Consensus 1 i~~~~~~~~~~~~~~~~----l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (178)
T cd03247 1 LSINNVSFSYPEQEQQV----LKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSL 76 (178)
T ss_pred CEEEEEEEEeCCCCccc----eEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhh
Confidence 47899999996433356 999999999999999999999999999999999999 99999999987642 3567
Q ss_pred EEEEeccchhhhccCCcccccccccCCHHHHHHHHHHhcccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH-----
Q 024032 142 ITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK----- 212 (273)
Q Consensus 142 i~~v~q~~~~~~~~~~~~tv~en~~~~~~~~~~~l~~~~~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~----- 212 (273)
++|++|++.++ ..|++||. ...||+||+||. |+ +.+|++|||||||++||+.
T Consensus 77 i~~~~q~~~~~-----~~tv~~~i--------------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l 137 (178)
T cd03247 77 ISVLNQRPYLF-----DTTLRNNL--------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQL 137 (178)
T ss_pred EEEEccCCeee-----cccHHHhh--------------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHH
Confidence 89999987642 34787764 578999999986 33 8999999999999999999
Q ss_pred -HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeEeeec
Q 024032 213 -SSPKYVLRRVDFAMVVS-------NIAEIYKALKAGDSKPLD 247 (273)
Q Consensus 213 -~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g 247 (273)
+.++++. + +.|||++ ..||++++|++|++++.|
T Consensus 138 ~~~l~~~~-~-~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 138 LSLIFEVL-K-DKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred HHHHHHHc-C-CCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 2344443 3 7888888 458999999999998653
No 232
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=7.1e-36 Score=294.73 Aligned_cols=210 Identities=15% Similarity=0.147 Sum_probs=163.7
Q ss_pred hhhhhhhhccchhhhhhhhHHHHHHHhc---hhhh---c--------c--CCCCceEEEEEEEEeecC---Ceeeeccce
Q 024032 28 KFDECVKLKLDLPNVSTLTPRLRVLREM---ERLA---L--------I--APDGLNELRHKFLSYRSG---DFWIPIGGI 88 (273)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~---~--------~--~~~~~i~~~~v~~~y~~g---~~~v~~~~L 88 (273)
.+..+...-..++.+.++.+|+.++++. +... . . .....++++|++|+|+.. .+++ |
T Consensus 283 pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~----l 358 (555)
T TIGR01194 283 PLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFA----L 358 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCce----e
Confidence 4455566667788999999999999652 1110 0 0 012468999999999642 1246 9
Q ss_pred eeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCccccc
Q 024032 89 QKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVY 162 (273)
Q Consensus 89 ~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~ 162 (273)
+++||++++|+++||+||||||||||+++|+|+++ ++|+|.++|.++.+ +++.+++++|++.+|. .|++
T Consensus 359 ~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~-----~ti~ 433 (555)
T TIGR01194 359 GPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFD-----DLIG 433 (555)
T ss_pred ccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhh-----hhhh
Confidence 99999999999999999999999999999999999 99999999999864 4577999999988653 4777
Q ss_pred ccc--cCCHHHHHHHHHHhc---------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH--HHH-HHH
Q 024032 163 DSR--GFNYNRVHEGLEELS---------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK--SSP-KYV 218 (273)
Q Consensus 163 en~--~~~~~~~~~~l~~~~---------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~--~~l-~~l 218 (273)
+|. ..+.+++.++++.++ ..||||||||. |+ +++|++|||||||++||+. ..+ +.+
T Consensus 434 ~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l 513 (555)
T TIGR01194 434 PDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEEL 513 (555)
T ss_pred cccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence 773 234566777777765 35999999986 44 8999999999999999999 222 222
Q ss_pred ---HhcCCcEEEEc-------eeCCEEEEEeCCeEeee
Q 024032 219 ---LRRVDFAMVVS-------NIAEIYKALKAGDSKPL 246 (273)
Q Consensus 219 ---~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~ 246 (273)
....++|+|++ ..||+|++|++|++++.
T Consensus 514 ~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 514 LPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred HHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 11237899888 46899999999999864
No 233
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-35 Score=268.07 Aligned_cols=180 Identities=19% Similarity=0.291 Sum_probs=142.8
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc------CccEEEECCeeCCC-
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSGN- 137 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~------~~G~I~i~g~~i~~- 137 (273)
.+++++|++++|. +..+ |+++||+|++||+++|+|+||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 23 ~~l~~~~l~~~~~--~~~i----l~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~ 96 (271)
T PRK14238 23 VVFDTQNLNLWYG--EDHA----LKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDK 96 (271)
T ss_pred eEEEEeeeEEEEC--Ccce----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccc
Confidence 4799999999985 3456 999999999999999999999999999999999974 78999999998731
Q ss_pred ------CCccEEEEeccchhhhccCCccccccccc-------CC-H----HHHHHHHHHh-------------cccCCHH
Q 024032 138 ------SSHTITMYMEEHNVMRSLQSGFCVYDSRG-------FN-Y----NRVHEGLEEL-------------SSWMSEG 186 (273)
Q Consensus 138 ------~~~~i~~v~q~~~~~~~~~~~~tv~en~~-------~~-~----~~~~~~l~~~-------------~~~LSgG 186 (273)
.++.++|++|++.++ ..|+++|.. .. . +.+.++++.+ ...||||
T Consensus 97 ~~~~~~~~~~i~~v~q~~~~~-----~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgG 171 (271)
T PRK14238 97 SYSVEELRTNVGMVFQKPNPF-----PKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGG 171 (271)
T ss_pred cccHHHHhhhEEEEecCCccc-----cccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHH
Confidence 356799999997643 248888732 11 1 1123333322 1679999
Q ss_pred HHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecC
Q 024032 187 VHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDA 248 (273)
Q Consensus 187 qkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~ 248 (273)
||||. |+ +.+|++|||||||++||+. +.++++.+ +.|||++ .+||++++|++|+++..|+
T Consensus 172 e~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~ 249 (271)
T PRK14238 172 QQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK--DYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDD 249 (271)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc--CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99987 33 7899999999999999999 33455543 6888888 5689999999999999999
Q ss_pred hhhhccChh
Q 024032 249 TKRLFSAPG 257 (273)
Q Consensus 249 ~~~l~~~~~ 257 (273)
+++++..+.
T Consensus 250 ~~~~~~~~~ 258 (271)
T PRK14238 250 TDKIFSNPS 258 (271)
T ss_pred HHHHHcCCC
Confidence 999886643
No 234
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-35 Score=262.81 Aligned_cols=178 Identities=17% Similarity=0.228 Sum_probs=139.9
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCc
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSH 140 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~ 140 (273)
++++|++++|.. ++.+ |+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|+++.. .++
T Consensus 1 l~~~~l~~~~~~-~~~~----l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~ 75 (236)
T cd03253 1 IEFENVTFAYDP-GRPV----LKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRR 75 (236)
T ss_pred CEEEEEEEEeCC-CCce----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHh
Confidence 468999999853 2446 999999999999999999999999999999999999 99999999998753 345
Q ss_pred cEEEEeccchhhhccCCcccccccccC-----CHHHHHH---------HHHHh-----------cccCCHHHHHHH---H
Q 024032 141 TITMYMEEHNVMRSLQSGFCVYDSRGF-----NYNRVHE---------GLEEL-----------SSWMSEGVHHNQ---R 192 (273)
Q Consensus 141 ~i~~v~q~~~~~~~~~~~~tv~en~~~-----~~~~~~~---------~l~~~-----------~~~LSgGqkq~~---r 192 (273)
.++|++|++.++ ..|+.+|..+ ....+.+ .++.+ ...||+||+||. |
T Consensus 76 ~i~~~~q~~~~~-----~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~ 150 (236)
T cd03253 76 AIGVVPQDTVLF-----NDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIAR 150 (236)
T ss_pred hEEEECCCChhh-----cchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHH
Confidence 699999997643 3588887422 2222222 12222 147999999986 3
Q ss_pred h-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 193 C-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 193 ~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
+ +.+|++|||||||++||+. +.+..+. + |.|||++ ..||++++|++|+++..|+.+++....
T Consensus 151 aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~~ 226 (236)
T cd03253 151 AILKNPPILLLDEATSALDTHTEREIQAALRDVS-K-GRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKG 226 (236)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhcc
Confidence 3 7899999999999999999 2344443 3 8899888 348999999999999999988876543
No 235
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9e-36 Score=268.44 Aligned_cols=179 Identities=18% Similarity=0.276 Sum_probs=141.3
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc------CccEEEECCeeCC---
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSG--- 136 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~------~~G~I~i~g~~i~--- 136 (273)
.++++|++++|. +.++ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++.
T Consensus 10 ~l~i~~v~~~~~--~~~i----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 83 (264)
T PRK14243 10 VLRTENLNVYYG--SFLA----VKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPD 83 (264)
T ss_pred EEEEeeeEEEEC--CEEE----eecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccc
Confidence 689999999984 4567 999999999999999999999999999999999874 5899999998873
Q ss_pred ----CCCccEEEEeccchhhhccCCcccccccccC-------C---HHHHHHHHHHhc-------------ccCCHHHHH
Q 024032 137 ----NSSHTITMYMEEHNVMRSLQSGFCVYDSRGF-------N---YNRVHEGLEELS-------------SWMSEGVHH 189 (273)
Q Consensus 137 ----~~~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~---~~~~~~~l~~~~-------------~~LSgGqkq 189 (273)
..++.+++++|++.++ ..|+.+|..+ . .+++.++++.++ .+|||||+|
T Consensus 84 ~~~~~~~~~i~~v~q~~~~~-----~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~q 158 (264)
T PRK14243 84 VDPVEVRRRIGMVFQKPNPF-----PKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQ 158 (264)
T ss_pred cChHHHhhhEEEEccCCccc-----cccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHH
Confidence 1356799999987643 2377777321 1 122333333321 569999999
Q ss_pred HH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEe---------CCe
Q 024032 190 NQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALK---------AGD 242 (273)
Q Consensus 190 ~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~---------~G~ 242 (273)
|. |+ +.+|++|||||||++||+. +.++++.+ +.|||++ .+||++++|+ +|+
T Consensus 159 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~ 236 (264)
T PRK14243 159 RLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE--QYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGY 236 (264)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEecCHHHHHHhCCEEEEEecccccccccCce
Confidence 86 33 7899999999999999999 33455543 5788888 6689999998 899
Q ss_pred EeeecChhhhccChh
Q 024032 243 SKPLDATKRLFSAPG 257 (273)
Q Consensus 243 i~~~g~~~~l~~~~~ 257 (273)
+++.|+++++++.+.
T Consensus 237 i~~~~~~~~~~~~~~ 251 (264)
T PRK14243 237 LVEFDRTEKIFNSPQ 251 (264)
T ss_pred EEEeCCHHHHHhCCC
Confidence 999999999986653
No 236
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=7.6e-36 Score=261.06 Aligned_cols=171 Identities=18% Similarity=0.239 Sum_probs=135.1
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CC
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SS 139 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~ 139 (273)
.++++++++.|..+++.+ |+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|.++.. .+
T Consensus 2 ~l~~~~l~~~~~~~~~~~----l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~ 77 (220)
T cd03245 2 RIEFRNVSFSYPNQEIPA----LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLR 77 (220)
T ss_pred eEEEEEEEEEcCCCCccc----ccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHH
Confidence 478999999995433456 999999999999999999999999999999999998 99999999998742 34
Q ss_pred ccEEEEeccchhhhccCCcccccccccC-----CHHHHHHHHHHhc--------------------ccCCHHHHHHH---
Q 024032 140 HTITMYMEEHNVMRSLQSGFCVYDSRGF-----NYNRVHEGLEELS--------------------SWMSEGVHHNQ--- 191 (273)
Q Consensus 140 ~~i~~v~q~~~~~~~~~~~~tv~en~~~-----~~~~~~~~l~~~~--------------------~~LSgGqkq~~--- 191 (273)
+.+++++|++.++ ..|+.||..+ ..+.+.+.++.++ .+||||||||.
T Consensus 78 ~~i~~~~q~~~~~-----~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la 152 (220)
T cd03245 78 RNIGYVPQDVTLF-----YGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALA 152 (220)
T ss_pred hhEEEeCCCCccc-----cchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHH
Confidence 5789999988643 2488887421 2334444444433 38999999986
Q ss_pred Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeEeeec
Q 024032 192 RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKAGDSKPLD 247 (273)
Q Consensus 192 r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g 247 (273)
|+ +.+|++|||||||++||+. +.++++.+ +.|||++ .+||++++|++|++++.|
T Consensus 153 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 153 RALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLG--DKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred HHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC--CCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 33 7899999999999999999 23444443 4788888 568999999999997653
No 237
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=1.3e-35 Score=266.32 Aligned_cols=181 Identities=17% Similarity=0.188 Sum_probs=143.1
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN----- 137 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~----- 137 (273)
.+.+++++++++|+..+..+ |+++||+|++||+++|+|+||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 17 ~~~i~~~~l~~~~~~~~~~i----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~ 92 (257)
T cd03288 17 GGEIKIHDLCVRYENNLKPV----LKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHT 92 (257)
T ss_pred CceEEEEEEEEEeCCCCCcc----eeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHH
Confidence 45799999999996433456 999999999999999999999999999999999999 99999999998753
Q ss_pred CCccEEEEeccchhhhccCCcccccccccC----CHHHHHHHHH---------Hhc-----------ccCCHHHHHHH--
Q 024032 138 SSHTITMYMEEHNVMRSLQSGFCVYDSRGF----NYNRVHEGLE---------ELS-----------SWMSEGVHHNQ-- 191 (273)
Q Consensus 138 ~~~~i~~v~q~~~~~~~~~~~~tv~en~~~----~~~~~~~~l~---------~~~-----------~~LSgGqkq~~-- 191 (273)
.++.+++++|++.+ +..|+++|... ....+.++++ .+. ..||+||+||.
T Consensus 93 ~~~~i~~v~q~~~l-----~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~l 167 (257)
T cd03288 93 LRSRLSIILQDPIL-----FSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCL 167 (257)
T ss_pred HhhhEEEECCCCcc-----cccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHH
Confidence 35679999998764 23478777432 1222333222 221 47999999986
Q ss_pred -Hh-cCCCCEEEEcCcCCCCCHHH------HHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccC
Q 024032 192 -RC-LRSDDCALMKNDAEIDDLKS------SPKYVLRRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSA 255 (273)
Q Consensus 192 -r~-l~~p~iLlLDEPts~LD~~~------~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~ 255 (273)
|+ +++|++|||||||++||+.. .++++. + +.|||++ ..||++++|++|++++.|+++++.+.
T Consensus 168 aral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~-~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 244 (257)
T cd03288 168 ARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-A-DRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQ 244 (257)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-C-CCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhc
Confidence 33 78999999999999999992 233332 3 7899888 34899999999999999999998754
No 238
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-35 Score=252.84 Aligned_cols=152 Identities=20% Similarity=0.274 Sum_probs=126.7
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-------C
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-------S 138 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-------~ 138 (273)
++++|++++|. ++++ ++++||++++||+++|+||||||||||+++|+|+++ ++|+|.++|+++.. .
T Consensus 1 i~~~~l~~~~~--~~~~----l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (178)
T cd03229 1 LELKNVSKRYG--QKTV----LNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPL 74 (178)
T ss_pred CEEEEEEEEEC--CeEE----EeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHH
Confidence 46899999984 3566 999999999999999999999999999999999999 99999999988743 2
Q ss_pred CccEEEEeccchhhhccCCcccccccccCCHHHHHHHHHHhcccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH--
Q 024032 139 SHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK-- 212 (273)
Q Consensus 139 ~~~i~~v~q~~~~~~~~~~~~tv~en~~~~~~~~~~~l~~~~~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~-- 212 (273)
++.+++++|++.. +...|++||.... ||+||+||. |+ +++|+++||||||++||+.
T Consensus 75 ~~~i~~~~q~~~~----~~~~t~~~~l~~~--------------lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~ 136 (178)
T cd03229 75 RRRIGMVFQDFAL----FPHLTVLENIALG--------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITR 136 (178)
T ss_pred hhcEEEEecCCcc----CCCCCHHHheeec--------------CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHH
Confidence 4678999998764 3445888875432 999999986 33 7999999999999999999
Q ss_pred ----HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCe
Q 024032 213 ----SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGD 242 (273)
Q Consensus 213 ----~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~ 242 (273)
+.+++++++.+.|+|++ ..||++++|++|+
T Consensus 137 ~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 137 REVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 33555555436898888 4689999999885
No 239
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-35 Score=270.21 Aligned_cols=180 Identities=17% Similarity=0.240 Sum_probs=142.5
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc------CccEEEECCeeCCC
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSGN 137 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~------~~G~I~i~g~~i~~ 137 (273)
+..+++++++++|. +..+ |+++||+|++||+++|+||||||||||+++|+|+.+ ++|+|.++|+++..
T Consensus 37 ~~~l~~~~l~~~~~--~~~i----l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~ 110 (286)
T PRK14275 37 KPHVVAKNFSIYYG--EFEA----VKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYG 110 (286)
T ss_pred ceEEEEeeeEEEEC--CEEE----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhh
Confidence 44789999999984 4556 999999999999999999999999999999999853 79999999988642
Q ss_pred -------CCccEEEEeccchhhhccCCcccccccccC--------CH----HHHHHHHHHhc-------------ccCCH
Q 024032 138 -------SSHTITMYMEEHNVMRSLQSGFCVYDSRGF--------NY----NRVHEGLEELS-------------SWMSE 185 (273)
Q Consensus 138 -------~~~~i~~v~q~~~~~~~~~~~~tv~en~~~--------~~----~~~~~~l~~~~-------------~~LSg 185 (273)
.++.++|++|++.++ ..|+.||..+ +. +.+.++++.++ ..|||
T Consensus 111 ~~~~~~~~~~~i~~v~q~~~l~-----~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSg 185 (286)
T PRK14275 111 KFTDEVLLRKKIGMVFQKPNPF-----PKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSG 185 (286)
T ss_pred cccchHHhhhcEEEECCCCCCC-----ccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCH
Confidence 356799999998643 2388887422 11 22334444331 67999
Q ss_pred HHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeec
Q 024032 186 GVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLD 247 (273)
Q Consensus 186 Gqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g 247 (273)
||+||. |+ +.+|++|||||||++||+. +.++++.+ +.|||++ .+||++++|++|+++..|
T Consensus 186 Gq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g 263 (286)
T PRK14275 186 GQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG--SYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHA 263 (286)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999986 33 7899999999999999999 33444443 5788888 568999999999999999
Q ss_pred ChhhhccCh
Q 024032 248 ATKRLFSAP 256 (273)
Q Consensus 248 ~~~~l~~~~ 256 (273)
+++++++.+
T Consensus 264 ~~~~~~~~~ 272 (286)
T PRK14275 264 PTAQLFTNP 272 (286)
T ss_pred CHHHHHhCC
Confidence 999987654
No 240
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=4e-36 Score=294.82 Aligned_cols=187 Identities=19% Similarity=0.254 Sum_probs=149.1
Q ss_pred CceEEEEEEEEeecC---------CeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeC
Q 024032 65 GLNELRHKFLSYRSG---------DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSS 135 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g---------~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i 135 (273)
.+++++|++++|..+ ++.+ |+++||+|++||++||+||||||||||+|+|+|+++++|+|+++|+++
T Consensus 274 ~~l~~~~l~~~~~~~~~~~~~~~~~~~i----l~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~~~G~i~~~g~~i 349 (529)
T PRK15134 274 PLLDVEQLQVAFPIRKGILKRTVDHNVV----VKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPL 349 (529)
T ss_pred CcccccCcEEEeecCcccccccccccee----eecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCcEEEECCEEc
Confidence 468999999999531 3456 999999999999999999999999999999999988899999999887
Q ss_pred CC--------CCccEEEEeccchhhhccCCccccccccc---------CC----HHHHHHHHHHhc----------ccCC
Q 024032 136 GN--------SSHTITMYMEEHNVMRSLQSGFCVYDSRG---------FN----YNRVHEGLEELS----------SWMS 184 (273)
Q Consensus 136 ~~--------~~~~i~~v~q~~~~~~~~~~~~tv~en~~---------~~----~~~~~~~l~~~~----------~~LS 184 (273)
.. .++.++|++|++.. .++..+||.+|.. .. .+.+.++++.++ .+||
T Consensus 350 ~~~~~~~~~~~~~~i~~v~q~~~~--~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS 427 (529)
T PRK15134 350 HNLNRRQLLPVRHRIQVVFQDPNS--SLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFS 427 (529)
T ss_pred cccchhhHHHhhhceEEEEeCchh--hcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCC
Confidence 43 24569999998731 1234458887732 11 123455566554 6899
Q ss_pred HHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeee
Q 024032 185 EGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPL 246 (273)
Q Consensus 185 gGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~ 246 (273)
||||||. |+ +.+|++|||||||++||+. +.+++++++.|.|||++ .+||++++|++|++++.
T Consensus 428 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~ 507 (529)
T PRK15134 428 GGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQ 507 (529)
T ss_pred HHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEE
Confidence 9999987 33 7899999999999999999 34556655458899988 56899999999999999
Q ss_pred cChhhhccChh
Q 024032 247 DATKRLFSAPG 257 (273)
Q Consensus 247 g~~~~l~~~~~ 257 (273)
|+++++++.+.
T Consensus 508 ~~~~~~~~~~~ 518 (529)
T PRK15134 508 GDCERVFAAPQ 518 (529)
T ss_pred cCHHHHhcCCC
Confidence 99999986553
No 241
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.6e-36 Score=252.14 Aligned_cols=150 Identities=15% Similarity=0.213 Sum_probs=126.7
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC----CCcc
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN----SSHT 141 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~----~~~~ 141 (273)
+++++++++|. +.++ |+++||++++||+++|+||||||||||+++|+|+++ ++|+|.++|+++.. .++.
T Consensus 1 l~~~~l~~~~~--~~~~----l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (173)
T cd03230 1 IEVRNLSKRYG--KKTA----LDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRR 74 (173)
T ss_pred CEEEEEEEEEC--Ceee----eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhcc
Confidence 46899999985 3456 999999999999999999999999999999999998 99999999998753 3567
Q ss_pred EEEEeccchhhhccCCcccccccccCCHHHHHHHHHHhcccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH-----
Q 024032 142 ITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK----- 212 (273)
Q Consensus 142 i~~v~q~~~~~~~~~~~~tv~en~~~~~~~~~~~l~~~~~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~----- 212 (273)
+++++|++.+ +...|+.+|.. |||||+||. |+ +.+|++|||||||++||+.
T Consensus 75 i~~~~q~~~~----~~~~tv~~~~~----------------LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l 134 (173)
T cd03230 75 IGYLPEEPSL----YENLTVRENLK----------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREF 134 (173)
T ss_pred EEEEecCCcc----ccCCcHHHHhh----------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHH
Confidence 9999999775 34458877642 999999986 33 7899999999999999999
Q ss_pred -HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeE
Q 024032 213 -SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDS 243 (273)
Q Consensus 213 -~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i 243 (273)
+.++++.++ |.|+|++ ..||++++|++|++
T Consensus 135 ~~~l~~~~~~-g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 135 WELLRELKKE-GKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred HHHHHHHHHC-CCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 345666655 8898888 46899999999974
No 242
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-35 Score=266.15 Aligned_cols=179 Identities=17% Similarity=0.235 Sum_probs=142.7
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-C-----ccEEEECCeeCCC--
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R-----SGLVLFAQTSSGN-- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~-----~G~I~i~g~~i~~-- 137 (273)
.++++|++++|. +.++ |+++||+|++||+++|+|+||||||||+++|+|+++ + +|+|.++|+++..
T Consensus 7 ~l~~~~l~~~~~--~~~i----l~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 80 (259)
T PRK14260 7 AIKVKDLSFYYN--TSKA----IEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPR 80 (259)
T ss_pred eEEEEEEEEEEC--CeEe----ecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccc
Confidence 689999999984 4566 999999999999999999999999999999999987 3 8999999998742
Q ss_pred -----CCccEEEEeccchhhhccCCcccccccccC--------CH----HHHHHHHHHhc-------------ccCCHHH
Q 024032 138 -----SSHTITMYMEEHNVMRSLQSGFCVYDSRGF--------NY----NRVHEGLEELS-------------SWMSEGV 187 (273)
Q Consensus 138 -----~~~~i~~v~q~~~~~~~~~~~~tv~en~~~--------~~----~~~~~~l~~~~-------------~~LSgGq 187 (273)
.++.+++++|++.++ ..|++||..+ .. +.+.++++.++ ..||+||
T Consensus 81 ~~~~~~~~~i~~v~q~~~l~-----~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~ 155 (259)
T PRK14260 81 ININRLRRQIGMVFQRPNPF-----PMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQ 155 (259)
T ss_pred cchHhhhhheEEEecccccC-----CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHH
Confidence 345799999988743 3588887421 11 22344444432 5799999
Q ss_pred HHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEe-----CCeEe
Q 024032 188 HHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALK-----AGDSK 244 (273)
Q Consensus 188 kq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~-----~G~i~ 244 (273)
+||. |+ +.+|++|||||||++||+. +.++++.+ +.|||++ .+||++++|+ +|+++
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~ 233 (259)
T PRK14260 156 QQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS--ELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMV 233 (259)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEE
Confidence 9986 33 7899999999999999999 33445543 6888888 5689999997 59999
Q ss_pred eecChhhhccChh
Q 024032 245 PLDATKRLFSAPG 257 (273)
Q Consensus 245 ~~g~~~~l~~~~~ 257 (273)
+.|+++++++.+.
T Consensus 234 ~~~~~~~~~~~~~ 246 (259)
T PRK14260 234 EFGVTTQIFSNPL 246 (259)
T ss_pred EeCCHHHHhcCCC
Confidence 9999999976543
No 243
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-35 Score=269.06 Aligned_cols=180 Identities=22% Similarity=0.319 Sum_probs=142.6
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc------CccEEEECCeeCCC
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSGN 137 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~------~~G~I~i~g~~i~~ 137 (273)
+..+++++++++|. ++.+ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 37 ~~~l~i~~l~~~~~--~~~i----l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~ 110 (285)
T PRK14254 37 ETVIEARDLNVFYG--DEQA----LDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYD 110 (285)
T ss_pred CceEEEEEEEEEEC--CEee----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccc
Confidence 34689999999984 4567 999999999999999999999999999999999974 69999999988732
Q ss_pred -------CCccEEEEeccchhhhccCCcccccccccC-------C---HHHHHHHHHHhc-------------ccCCHHH
Q 024032 138 -------SSHTITMYMEEHNVMRSLQSGFCVYDSRGF-------N---YNRVHEGLEELS-------------SWMSEGV 187 (273)
Q Consensus 138 -------~~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~---~~~~~~~l~~~~-------------~~LSgGq 187 (273)
.++.+++++|++.++ ..|+.+|..+ . .+++.++++.++ .+|||||
T Consensus 111 ~~~~~~~~~~~i~~v~q~~~l~-----~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe 185 (285)
T PRK14254 111 ADVDPVALRRRIGMVFQKPNPF-----PKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQ 185 (285)
T ss_pred cccchHhhhccEEEEecCCccC-----cCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHH
Confidence 356799999987643 2378877321 1 233455555542 5799999
Q ss_pred HHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEE-EEeCCeEeeecC
Q 024032 188 HHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYK-ALKAGDSKPLDA 248 (273)
Q Consensus 188 kq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~-vl~~G~i~~~g~ 248 (273)
|||. |+ +.+|++|||||||+|||+. +.++++.+ +.|||++ .+||+++ +|++|++++.|+
T Consensus 186 ~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~--~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~ 263 (285)
T PRK14254 186 QQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE--EYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDD 263 (285)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCC
Confidence 9987 33 7899999999999999999 33555554 4688888 4689975 679999999999
Q ss_pred hhhhccCh
Q 024032 249 TKRLFSAP 256 (273)
Q Consensus 249 ~~~l~~~~ 256 (273)
+++++.++
T Consensus 264 ~~~~~~~~ 271 (285)
T PRK14254 264 TDKIFENP 271 (285)
T ss_pred HHHHHhCc
Confidence 99987654
No 244
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=9.9e-36 Score=256.69 Aligned_cols=164 Identities=16% Similarity=0.138 Sum_probs=133.5
Q ss_pred ceEEEEEEEEeecC----CeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCc--c-CccEEEECCeeCCC-
Q 024032 66 LNELRHKFLSYRSG----DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVL--S-RSGLVLFAQTSSGN- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g----~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~--~-~~G~I~i~g~~i~~- 137 (273)
.+++++++++|+.. ++++ |+++||++++||+++|+||||||||||+++|+|++ + ++|+|.++|+++..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~----l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~ 78 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQL----LKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKR 78 (194)
T ss_pred EEEEEeeEEEEecCCCcccccc----eecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchH
Confidence 47899999999642 2456 99999999999999999999999999999999999 8 99999999998763
Q ss_pred -CCccEEEEeccchhhhccCCcccccccccCCHHHHHHHHHHhcccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH
Q 024032 138 -SSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK 212 (273)
Q Consensus 138 -~~~~i~~v~q~~~~~~~~~~~~tv~en~~~~~~~~~~~l~~~~~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~ 212 (273)
.++.+++++|++.. +..+|+++|..+.. .+ ..||+||+||. |+ +.+|+++||||||++||+.
T Consensus 79 ~~~~~i~~~~q~~~~----~~~~t~~~~i~~~~--------~~-~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~ 145 (194)
T cd03213 79 SFRKIIGYVPQDDIL----HPTLTVRETLMFAA--------KL-RGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSS 145 (194)
T ss_pred hhhheEEEccCcccC----CCCCcHHHHHHHHH--------Hh-ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHH
Confidence 45679999998764 34458887653211 01 17999999986 33 7899999999999999999
Q ss_pred ------HHHHHHHhcCCcEEEEc---------eeCCEEEEEeCCeEeeec
Q 024032 213 ------SSPKYVLRRVDFAMVVS---------NIAEIYKALKAGDSKPLD 247 (273)
Q Consensus 213 ------~~l~~l~~~~g~tiiiv---------~~ad~i~vl~~G~i~~~g 247 (273)
+.++++.++ |.|+|++ ..||++++|++|++++.|
T Consensus 146 ~~~~l~~~l~~~~~~-~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 146 SALQVMSLLRRLADT-GRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HHHHHHHHHHHHHhC-CCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 335555544 8899888 337999999999997653
No 245
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-35 Score=289.03 Aligned_cols=174 Identities=17% Similarity=0.204 Sum_probs=141.4
Q ss_pred EEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC------CCcc
Q 024032 69 LRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------SSHT 141 (273)
Q Consensus 69 ~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------~~~~ 141 (273)
++|++++|. ++++ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++.. .++.
T Consensus 1 ~~nl~~~~~--~~~i----l~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 74 (491)
T PRK10982 1 MSNISKSFP--GVKA----LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENG 74 (491)
T ss_pred CCceEEEeC--CEEe----eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 367888883 4667 999999999999999999999999999999999998 99999999998753 2457
Q ss_pred EEEEeccchhhhccCCcccccccccC----------CH----HHHHHHHHHhc---------ccCCHHHHHHH---Hh-c
Q 024032 142 ITMYMEEHNVMRSLQSGFCVYDSRGF----------NY----NRVHEGLEELS---------SWMSEGVHHNQ---RC-L 194 (273)
Q Consensus 142 i~~v~q~~~~~~~~~~~~tv~en~~~----------~~----~~~~~~l~~~~---------~~LSgGqkq~~---r~-l 194 (273)
+++++|++.. ++.+||++|..+ +. +++.++++.++ .+||||||||. |+ +
T Consensus 75 i~~v~q~~~~----~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~ 150 (491)
T PRK10982 75 ISMVHQELNL----VLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFS 150 (491)
T ss_pred EEEEeccccc----ccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHH
Confidence 9999998764 445588887321 11 23455666655 67999999987 33 7
Q ss_pred CCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhc
Q 024032 195 RSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLF 253 (273)
Q Consensus 195 ~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~ 253 (273)
.+|++|||||||++||+. +.++++.++ |.|||++ .+||++++|++|+++..|+++++.
T Consensus 151 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 222 (491)
T PRK10982 151 YNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKER-GCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLT 222 (491)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCC
Confidence 899999999999999999 335566544 8999998 568999999999999999988764
No 246
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1.6e-35 Score=287.97 Aligned_cols=187 Identities=11% Similarity=0.102 Sum_probs=148.5
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CC
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SS 139 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~ 139 (273)
+++++|++++|+ ++.+ |+++||+|++|++++|+||||||||||+|+|+|+++ ++|+|.++|.++.. .+
T Consensus 3 ~l~~~~l~~~~~--~~~i----l~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~ 76 (490)
T PRK10938 3 SLQISQGTFRLS--DTKT----LQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQ 76 (490)
T ss_pred eEEEEeEEEEcC--Ceee----cccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHH
Confidence 589999999984 4456 999999999999999999999999999999999998 99999999877642 23
Q ss_pred ccEEEEeccchhh--hc--cCCcccccccccC---CHHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCCE
Q 024032 140 HTITMYMEEHNVM--RS--LQSGFCVYDSRGF---NYNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDDC 199 (273)
Q Consensus 140 ~~i~~v~q~~~~~--~~--~~~~~tv~en~~~---~~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~i 199 (273)
+.+++++|++... .. ..+.+|+.++... ..+++.++++.++ .+||||||||. ++ +.+|++
T Consensus 77 ~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l 156 (490)
T PRK10938 77 KLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDL 156 (490)
T ss_pred HHhceeccCcchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 4589999976431 00 0124578776432 2345666777765 78999999987 33 789999
Q ss_pred EEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChhhH
Q 024032 200 ALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPGLR 259 (273)
Q Consensus 200 LlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~l~ 259 (273)
|||||||++||+. +.++++.++ |.|||++ .+||++++|++|+++..|+++++++.+.+.
T Consensus 157 llLDEPt~~LD~~~~~~l~~~l~~~~~~-g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~ 229 (490)
T PRK10938 157 LILDEPFDGLDVASRQQLAELLASLHQS-GITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQALVA 229 (490)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhcchhhh
Confidence 9999999999999 445666555 8899998 568999999999999999998876654433
No 247
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=1.8e-35 Score=259.19 Aligned_cols=169 Identities=19% Similarity=0.261 Sum_probs=136.4
Q ss_pred eEEEEEEEEeecCC--eeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC------
Q 024032 67 NELRHKFLSYRSGD--FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------ 137 (273)
Q Consensus 67 i~~~~v~~~y~~g~--~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------ 137 (273)
++++|+++.|+.++ ..+ |+++||++++|++++|+||||||||||+++|+|+++ ++|+|.++|.++..
T Consensus 2 l~~~~l~~~~~~~~~~~~i----l~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~ 77 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQV----LFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKEL 77 (220)
T ss_pred EEEEEEEEEccCCCcceeE----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHH
Confidence 68999999996432 456 999999999999999999999999999999999999 99999999998752
Q ss_pred --CCccEEEEeccchhhhccCCccccccccc--------CCH----HHHHHHHHHhc---------ccCCHHHHHHH---
Q 024032 138 --SSHTITMYMEEHNVMRSLQSGFCVYDSRG--------FNY----NRVHEGLEELS---------SWMSEGVHHNQ--- 191 (273)
Q Consensus 138 --~~~~i~~v~q~~~~~~~~~~~~tv~en~~--------~~~----~~~~~~l~~~~---------~~LSgGqkq~~--- 191 (273)
.++.+++++|++.++ ..+|+.+|.. ... +.+.++++.++ ..||+||+||.
T Consensus 78 ~~~~~~i~~~~q~~~~~----~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~la 153 (220)
T TIGR02982 78 VQLRRNIGYIFQAHNLL----GFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIA 153 (220)
T ss_pred HHHHhheEEEcCChhhc----CCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHH
Confidence 246799999998753 3458887731 111 23555666655 67999999986
Q ss_pred Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeE
Q 024032 192 RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKAGDS 243 (273)
Q Consensus 192 r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i 243 (273)
|+ +.+|++|||||||++||+. ..++++.++.+.|||++ ..||++++|++|++
T Consensus 154 ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 154 RALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 33 7899999999999999999 33555554447899988 56899999999986
No 248
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=1.9e-35 Score=288.08 Aligned_cols=177 Identities=14% Similarity=0.185 Sum_probs=142.6
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc---CccEEEECCeeCCC-----
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS---RSGLVLFAQTSSGN----- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~---~~G~I~i~g~~i~~----- 137 (273)
+++++|++++|. ++++ |+++||++++|+++||+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 1 ~l~i~~l~~~~~--~~~i----l~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~ 74 (500)
T TIGR02633 1 LLEMKGIVKTFG--GVKA----LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRD 74 (500)
T ss_pred CEEEEeEEEEeC--CeEe----ecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHH
Confidence 378999999984 4567 999999999999999999999999999999999987 49999999998753
Q ss_pred -CCccEEEEeccchhhhccCCcccccccccC-----------CH----HHHHHHHHHhc----------ccCCHHHHHHH
Q 024032 138 -SSHTITMYMEEHNVMRSLQSGFCVYDSRGF-----------NY----NRVHEGLEELS----------SWMSEGVHHNQ 191 (273)
Q Consensus 138 -~~~~i~~v~q~~~~~~~~~~~~tv~en~~~-----------~~----~~~~~~l~~~~----------~~LSgGqkq~~ 191 (273)
.++.++|++|++.+ +..+|+.+|..+ .. +++.++++.++ .+||||||||.
T Consensus 75 ~~~~~i~~v~q~~~~----~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv 150 (500)
T TIGR02633 75 TERAGIVIIHQELTL----VPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLV 150 (500)
T ss_pred HHhCCEEEEeecccc----CCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHH
Confidence 23569999999765 344577776321 11 23455566554 57999999987
Q ss_pred ---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhc
Q 024032 192 ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLF 253 (273)
Q Consensus 192 ---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~ 253 (273)
|+ +.+|++|||||||+|||+. +.++++.++ |.|||++ .+||++++|++|+++..++++++.
T Consensus 151 ~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (500)
T TIGR02633 151 EIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAH-GVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTMS 229 (500)
T ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccCC
Confidence 33 7899999999999999999 345566554 8999998 568999999999999988877654
No 249
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-35 Score=295.74 Aligned_cols=186 Identities=15% Similarity=0.191 Sum_probs=147.6
Q ss_pred CCceEEEEEEEEeecC--CeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCC----
Q 024032 64 DGLNELRHKFLSYRSG--DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSG---- 136 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g--~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~---- 136 (273)
+.+++++|++++|..+ +.++ |++|||+|++||++||+||||||||||+|+|+|+++ ++|.|.++|..+.
T Consensus 10 ~~~l~v~~l~~~y~~~~~~~~~----l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~ 85 (623)
T PRK10261 10 RDVLAVENLNIAFMQEQQKIAA----VRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSR 85 (623)
T ss_pred CceEEEeceEEEecCCCCceeE----EEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccc
Confidence 3479999999999642 2356 999999999999999999999999999999999998 9999999886431
Q ss_pred ------C--------C-CccEEEEeccchhhhccCCccccccccc--------CCH----HHHHHHHHHhc---------
Q 024032 137 ------N--------S-SHTITMYMEEHNVMRSLQSGFCVYDSRG--------FNY----NRVHEGLEELS--------- 180 (273)
Q Consensus 137 ------~--------~-~~~i~~v~q~~~~~~~~~~~~tv~en~~--------~~~----~~~~~~l~~~~--------- 180 (273)
. . ++.+++++|++... +...+||.+|.. .+. +++.++++.++
T Consensus 86 ~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~--l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~ 163 (623)
T PRK10261 86 QVIELSEQSAAQMRHVRGADMAMIFQEPMTS--LNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILS 163 (623)
T ss_pred cccccccCCHHHHHHHhCCCEEEEEeCchhh--cCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHh
Confidence 0 1 24699999987310 133458888732 222 34555666554
Q ss_pred ---ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEe
Q 024032 181 ---SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALK 239 (273)
Q Consensus 181 ---~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~ 239 (273)
.+||||||||+ ++ +.+|++|||||||++||+. ++++++.++.|+|||+| .+||+|++|+
T Consensus 164 ~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~ 243 (623)
T PRK10261 164 RYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMY 243 (623)
T ss_pred CCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEee
Confidence 57999999987 33 7899999999999999999 34667765558999999 5689999999
Q ss_pred CCeEeeecChhhhccC
Q 024032 240 AGDSKPLDATKRLFSA 255 (273)
Q Consensus 240 ~G~i~~~g~~~~l~~~ 255 (273)
+|++++.|++++++..
T Consensus 244 ~G~i~~~g~~~~~~~~ 259 (623)
T PRK10261 244 QGEAVETGSVEQIFHA 259 (623)
T ss_pred CCeecccCCHHHhhcC
Confidence 9999999999988754
No 250
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=3.2e-35 Score=254.54 Aligned_cols=162 Identities=17% Similarity=0.140 Sum_probs=131.7
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhC--cc-CccEEEECCeeCCCC-----
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSV--LS-RSGLVLFAQTSSGNS----- 138 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl--~~-~~G~I~i~g~~i~~~----- 138 (273)
++++|++++|. ++++ |+++||++++||+++|+||||||||||+++|+|+ ++ ++|+|.++|+++...
T Consensus 1 l~~~~l~~~~~--~~~~----l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~ 74 (200)
T cd03217 1 LEIKDLHVSVG--GKEI----LKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEER 74 (200)
T ss_pred CeEEEEEEEeC--CEEe----eeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHH
Confidence 46899999985 4567 9999999999999999999999999999999999 46 999999999988531
Q ss_pred -CccEEEEeccchhhhccCCcccccccccCCHHHHHHHHHHhcccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH-
Q 024032 139 -SHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK- 212 (273)
Q Consensus 139 -~~~i~~v~q~~~~~~~~~~~~tv~en~~~~~~~~~~~l~~~~~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~- 212 (273)
+..++|++|++..+ ...++.++. +.....|||||+||. |+ +.+|++|||||||++||+.
T Consensus 75 ~~~~i~~v~q~~~~~----~~~~~~~~l-----------~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~ 139 (200)
T cd03217 75 ARLGIFLAFQYPPEI----PGVKNADFL-----------RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDA 139 (200)
T ss_pred hhCcEEEeecChhhc----cCccHHHHH-----------hhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHH
Confidence 34599999987753 233555432 333468999999986 33 7899999999999999999
Q ss_pred -----HHHHHHHhcCCcEEEEc--------e-eCCEEEEEeCCeEeeecChh
Q 024032 213 -----SSPKYVLRRVDFAMVVS--------N-IAEIYKALKAGDSKPLDATK 250 (273)
Q Consensus 213 -----~~l~~l~~~~g~tiiiv--------~-~ad~i~vl~~G~i~~~g~~~ 250 (273)
+.++++.++ +.|||++ . .||++++|++|++++.|+.+
T Consensus 140 ~~~l~~~L~~~~~~-~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~~~~ 190 (200)
T cd03217 140 LRLVAEVINKLREE-GKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGDKE 190 (200)
T ss_pred HHHHHHHHHHHHHC-CCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEccHH
Confidence 335555544 7899888 3 69999999999999998443
No 251
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-35 Score=254.82 Aligned_cols=164 Identities=13% Similarity=0.087 Sum_probs=133.0
Q ss_pred ceEEEEEEEEeecC--CeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCc--c-CccEEEECCeeCC-CCC
Q 024032 66 LNELRHKFLSYRSG--DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVL--S-RSGLVLFAQTSSG-NSS 139 (273)
Q Consensus 66 ~i~~~~v~~~y~~g--~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~--~-~~G~I~i~g~~i~-~~~ 139 (273)
.++++++++.|..+ ++++ |+++||++++|++++|+||||||||||+++|+|++ + ++|+|.++|+++. ..+
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~----l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQL----LNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEe----EEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhh
Confidence 68899999999642 2456 99999999999999999999999999999999985 4 8999999999874 345
Q ss_pred ccEEEEeccchhhhccCCcccccccccCCHHHHHHHHHHhcccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH---
Q 024032 140 HTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK--- 212 (273)
Q Consensus 140 ~~i~~v~q~~~~~~~~~~~~tv~en~~~~~~~~~~~l~~~~~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~--- 212 (273)
+.+++++|++.. ++.+|+++|..+.. .+ ..|||||+||. |+ +.+|++|||||||++||+.
T Consensus 79 ~~i~~~~q~~~~----~~~~tv~~~l~~~~-----~~----~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~ 145 (192)
T cd03232 79 RSTGYVEQQDVH----SPNLTVREALRFSA-----LL----RGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAY 145 (192)
T ss_pred hceEEecccCcc----ccCCcHHHHHHHHH-----HH----hcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHH
Confidence 678999998764 44468888754311 11 18999999986 33 7899999999999999999
Q ss_pred ---HHHHHHHhcCCcEEEEc---------eeCCEEEEEeC-CeEeeec
Q 024032 213 ---SSPKYVLRRVDFAMVVS---------NIAEIYKALKA-GDSKPLD 247 (273)
Q Consensus 213 ---~~l~~l~~~~g~tiiiv---------~~ad~i~vl~~-G~i~~~g 247 (273)
+.++++.++ |.|||++ ..||++++|++ |++++.|
T Consensus 146 ~l~~~l~~~~~~-~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 146 NIVRFLKKLADS-GQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHHHHHHHHHHc-CCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 335555544 8899888 24799999999 9998764
No 252
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-35 Score=258.50 Aligned_cols=164 Identities=17% Similarity=0.227 Sum_probs=131.0
Q ss_pred EEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC---------CCc
Q 024032 71 HKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---------SSH 140 (273)
Q Consensus 71 ~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---------~~~ 140 (273)
+++++|+ ++ . + |+||+|++ |+++|+||||||||||+++|+|+++ ++|+|.++|.++.. .++
T Consensus 5 ~l~~~~~--~~-~----~-~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 75 (214)
T cd03297 5 DIEKRLP--DF-T----L-KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQR 75 (214)
T ss_pred eeeEecC--Ce-e----e-CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhh
Confidence 7888884 32 3 5 99999999 9999999999999999999999999 99999999987642 345
Q ss_pred cEEEEeccchhhhccCCcccccccccC---------CHHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCC
Q 024032 141 TITMYMEEHNVMRSLQSGFCVYDSRGF---------NYNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDD 198 (273)
Q Consensus 141 ~i~~v~q~~~~~~~~~~~~tv~en~~~---------~~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~ 198 (273)
.+++++|++.+ +..+|+.+|..+ ..+++.+.++.++ .+||||||||. ++ +.+|+
T Consensus 76 ~i~~~~q~~~~----~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 151 (214)
T cd03297 76 KIGLVFQQYAL----FPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPE 151 (214)
T ss_pred cEEEEecCCcc----CCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCC
Confidence 79999998765 344588887321 1224555666655 67999999986 33 79999
Q ss_pred EEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeec
Q 024032 199 CALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLD 247 (273)
Q Consensus 199 iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g 247 (273)
+|||||||+|||+. +.++++.++.|.|||++ .+||++++|++|++++.|
T Consensus 152 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 152 LLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999 33555655447898888 468999999999998764
No 253
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=9e-36 Score=263.23 Aligned_cols=161 Identities=16% Similarity=0.187 Sum_probs=129.6
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEEEEeccchhhhccCCccccccccc
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRG 166 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en~~ 166 (273)
|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++.......++++|++.+ +..+|+.||..
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l----~~~~tv~e~l~ 76 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSL----LPWLTVRENIA 76 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCccc----CCCCCHHHHHH
Confidence 578999999999999999999999999999999999 9999999999886544445889998765 33458888732
Q ss_pred ---------CCH----HHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HH
Q 024032 167 ---------FNY----NRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SS 214 (273)
Q Consensus 167 ---------~~~----~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~ 214 (273)
... +.+.+.++.++ .+||||||||. |+ +.+|++|||||||+|||+. +.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~ 156 (230)
T TIGR01184 77 LAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEE 156 (230)
T ss_pred HHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHH
Confidence 111 12455566554 67999999987 33 7899999999999999999 33
Q ss_pred HHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhh
Q 024032 215 PKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRL 252 (273)
Q Consensus 215 l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l 252 (273)
++++.++.|.|||++ .+||++++|++|+++..|+..++
T Consensus 157 l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 157 LMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence 455554448899888 56899999999999998887665
No 254
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=2.5e-35 Score=261.32 Aligned_cols=164 Identities=16% Similarity=0.113 Sum_probs=126.7
Q ss_pred ecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC----CCccEEEEeccchh
Q 024032 77 RSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN----SSHTITMYMEEHNV 151 (273)
Q Consensus 77 ~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~----~~~~i~~v~q~~~~ 151 (273)
.++.+++ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++.. .++.++|++|+...
T Consensus 30 ~~~~~~i----l~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~ 105 (236)
T cd03267 30 KYREVEA----LKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQ 105 (236)
T ss_pred ccCCeee----eeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccc
Confidence 3355566 999999999999999999999999999999999998 99999999987532 34578888855332
Q ss_pred hhccCCcccccccc-------cCCHH----HHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCC
Q 024032 152 MRSLQSGFCVYDSR-------GFNYN----RVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDDCALMKNDAE 207 (273)
Q Consensus 152 ~~~~~~~~tv~en~-------~~~~~----~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~iLlLDEPts 207 (273)
++..+|+.||. +...+ .+.+.++.++ ..|||||+||. ++ +.+|++|||||||+
T Consensus 106 ---~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~ 182 (236)
T cd03267 106 ---LWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTI 182 (236)
T ss_pred ---cCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 13445788763 12222 2344555544 67999999986 33 78999999999999
Q ss_pred CCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeec
Q 024032 208 IDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLD 247 (273)
Q Consensus 208 ~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g 247 (273)
+||+. +.++++.++.+.|||++ .+||++++|++|++++.|
T Consensus 183 ~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 183 GLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 99999 33555555447899988 568999999999998654
No 255
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=8e-36 Score=282.64 Aligned_cols=207 Identities=15% Similarity=0.118 Sum_probs=173.2
Q ss_pred chhhhhhhhHHHHHHHhchhh-----hccCCCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHH
Q 024032 38 DLPNVSTLTPRLRVLREMERL-----ALIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKS 112 (273)
Q Consensus 38 ~~~~~~~~~~r~~~~~~~~~~-----~~~~~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKS 112 (273)
.+..+..++.|+.++++..+. +.+.+++.+.++++++.-+...+++ |+++||++.+||.+|||||||||||
T Consensus 301 q~~~Ar~s~~Rl~~lL~~~p~~~~~m~LP~P~g~L~Ve~l~~~PPg~~~pi----l~~isF~l~~G~~lgIIGPSgSGKS 376 (580)
T COG4618 301 QFVAARQSYKRLNELLAELPAAAERMPLPAPQGALSVERLTAAPPGQKKPI----LKGISFALQAGEALGIIGPSGSGKS 376 (580)
T ss_pred HHHHHHHHHHHHHHHHHhCccccCCCCCCCCCceeeEeeeeecCCCCCCcc----eecceeEecCCceEEEECCCCccHH
Confidence 344678889999999886543 3556678999999999665555677 9999999999999999999999999
Q ss_pred HHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCcccccccc-----cCCHHHHHHHHHHhc-
Q 024032 113 SLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSR-----GFNYNRVHEGLEELS- 180 (273)
Q Consensus 113 TLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~-----~~~~~~~~~~l~~~~- 180 (273)
||.|+|.|.++ .+|.|++||-++.. +.++|||.+|+..+ |..||.||. ..+.+.+.++.+..+
T Consensus 377 TLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeL-----F~GTIaeNIaRf~~~~d~~kIieAA~lAgv 451 (580)
T COG4618 377 TLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVEL-----FDGTIAENIARFGEEADPEKVIEAARLAGV 451 (580)
T ss_pred HHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCccccee-----cCCcHHHHHHhccccCCHHHHHHHHHHcCh
Confidence 99999999999 99999999999874 56889999999884 556999993 345666666666554
Q ss_pred -------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--
Q 024032 181 -------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-- 229 (273)
Q Consensus 181 -------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-- 229 (273)
..||||||||. |+ ..+|.+++||||-++||.. +.+..++++ |.|+|+|
T Consensus 452 HelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~r-G~~vvviaH 530 (580)
T COG4618 452 HELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKAR-GGTVVVIAH 530 (580)
T ss_pred HHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHc-CCEEEEEec
Confidence 67999999987 55 7899999999999999999 345666666 8888777
Q ss_pred -----eeCCEEEEEeCCeEeeecChhhhcc
Q 024032 230 -----NIAEIYKALKAGDSKPLDATKRLFS 254 (273)
Q Consensus 230 -----~~ad~i~vl~~G~i~~~g~~~~l~~ 254 (273)
..+|+|++|++|++...|+.+|++.
T Consensus 531 RPs~L~~~Dkilvl~~G~~~~FG~r~eVLa 560 (580)
T COG4618 531 RPSALASVDKILVLQDGRIAAFGPREEVLA 560 (580)
T ss_pred CHHHHhhcceeeeecCChHHhcCCHHHHHH
Confidence 4579999999999999999999874
No 256
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.2e-35 Score=264.82 Aligned_cols=181 Identities=18% Similarity=0.209 Sum_probs=143.9
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc------CccEEEECCeeCCC
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSGN 137 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~------~~G~I~i~g~~i~~ 137 (273)
...++++|++++|. ++++ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++..
T Consensus 19 ~~~l~i~nl~~~~~--~~~i----l~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~ 92 (276)
T PRK14271 19 APAMAAVNLTLGFA--GKTV----LDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFN 92 (276)
T ss_pred CcEEEEeeEEEEEC--CEEE----eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccc
Confidence 34789999999994 4667 999999999999999999999999999999999987 39999999988742
Q ss_pred ------CCccEEEEeccchhhhccCCcccccccccC--------CHHH----HHHHHHHhc-------------ccCCHH
Q 024032 138 ------SSHTITMYMEEHNVMRSLQSGFCVYDSRGF--------NYNR----VHEGLEELS-------------SWMSEG 186 (273)
Q Consensus 138 ------~~~~i~~v~q~~~~~~~~~~~~tv~en~~~--------~~~~----~~~~l~~~~-------------~~LSgG 186 (273)
.++.++|++|++.++ ..|+++|..+ .... +.+.++.++ ..||||
T Consensus 93 ~~~~~~~~~~i~~v~q~~~l~-----~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgG 167 (276)
T PRK14271 93 YRDVLEFRRRVGMLFQRPNPF-----PMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGG 167 (276)
T ss_pred cchhHHHhhheEEeccCCccC-----CccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHH
Confidence 356799999987643 2588887321 2222 223334332 469999
Q ss_pred HHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecC
Q 024032 187 VHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDA 248 (273)
Q Consensus 187 qkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~ 248 (273)
|+||. |+ +.+|++|||||||++||+. +.++++.+ +.|||++ .+||++++|++|++++.|+
T Consensus 168 q~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~ 245 (276)
T PRK14271 168 QQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD--RLTVIIVTHNLAQAARISDRAALFFDGRLVEEGP 245 (276)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99986 33 7899999999999999999 23445543 5788888 5689999999999999999
Q ss_pred hhhhccChh
Q 024032 249 TKRLFSAPG 257 (273)
Q Consensus 249 ~~~l~~~~~ 257 (273)
++++++.+.
T Consensus 246 ~~~~~~~~~ 254 (276)
T PRK14271 246 TEQLFSSPK 254 (276)
T ss_pred HHHHHhCcC
Confidence 999987643
No 257
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.8e-35 Score=262.53 Aligned_cols=179 Identities=18% Similarity=0.263 Sum_probs=143.9
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc------CccEEEECCeeCCC-
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSGN- 137 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~------~~G~I~i~g~~i~~- 137 (273)
..+.++++++.| ++.++ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 7 ~~~~~~~~~~~~--~~~~~----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~ 80 (261)
T PRK14263 7 IVMDCKLDKIFY--GNFMA----VRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGK 80 (261)
T ss_pred ceEEEEeEEEEe--CCEEE----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEecccc
Confidence 367889998888 45667 999999999999999999999999999999999985 49999999998742
Q ss_pred ------CCccEEEEeccchhhhccCCcccccccccCC----------HHHHHHHHHHhc-------------ccCCHHHH
Q 024032 138 ------SSHTITMYMEEHNVMRSLQSGFCVYDSRGFN----------YNRVHEGLEELS-------------SWMSEGVH 188 (273)
Q Consensus 138 ------~~~~i~~v~q~~~~~~~~~~~~tv~en~~~~----------~~~~~~~l~~~~-------------~~LSgGqk 188 (273)
.++.+++++|++.+ +.+|+.||..+. .+.+.++++.++ ..||+||+
T Consensus 81 ~~~~~~~~~~i~~v~q~~~~-----~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~ 155 (261)
T PRK14263 81 GVDPVVVRRYIGMVFQQPNP-----FSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQ 155 (261)
T ss_pred ccchHhhhhceEEEecCCcc-----ccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHH
Confidence 34679999999764 246888884321 124455555543 46999999
Q ss_pred HHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEe--------CCe
Q 024032 189 HNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALK--------AGD 242 (273)
Q Consensus 189 q~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~--------~G~ 242 (273)
||. |+ +++|++|||||||+|||+. +.++++. + +.|+|++ .+||++++|+ +|+
T Consensus 156 qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~-~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~ 233 (261)
T PRK14263 156 QRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK-K-DYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGY 233 (261)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHHhCCEEEEEecccccccCCce
Confidence 986 33 7899999999999999999 3355553 3 6888888 5689999996 899
Q ss_pred EeeecChhhhccCh
Q 024032 243 SKPLDATKRLFSAP 256 (273)
Q Consensus 243 i~~~g~~~~l~~~~ 256 (273)
+++.|+++++++.+
T Consensus 234 i~~~g~~~~~~~~~ 247 (261)
T PRK14263 234 LVEMGPTAQIFQNP 247 (261)
T ss_pred EEEeCCHHHHHhCC
Confidence 99999999988654
No 258
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=3.3e-35 Score=288.32 Aligned_cols=185 Identities=18% Similarity=0.237 Sum_probs=144.8
Q ss_pred CceEEEEEEEEeecC--CeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc------CccEEEECCeeCC
Q 024032 65 GLNELRHKFLSYRSG--DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSG 136 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g--~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~------~~G~I~i~g~~i~ 136 (273)
.+++++|++++|..+ .+++ |+++||+|++||++||+||||||||||+|+|+|+++ ++|+|.++|+++.
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~~----l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~ 79 (529)
T PRK15134 4 PLLAIENLSVAFRQQQTVRTV----VNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLL 79 (529)
T ss_pred ceEEEeceEEEecCCCCceee----eeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecc
Confidence 368999999999642 2456 999999999999999999999999999999999987 3899999999874
Q ss_pred CC---------CccEEEEeccchhhhccCCcccccccc--------cCC----HHHHHHHHHHhc------------ccC
Q 024032 137 NS---------SHTITMYMEEHNVMRSLQSGFCVYDSR--------GFN----YNRVHEGLEELS------------SWM 183 (273)
Q Consensus 137 ~~---------~~~i~~v~q~~~~~~~~~~~~tv~en~--------~~~----~~~~~~~l~~~~------------~~L 183 (273)
.. ++.+++++|++... +....++.+|. +.+ .+++.++++.++ .+|
T Consensus 80 ~~~~~~~~~~~~~~ig~v~Q~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~L 157 (529)
T PRK15134 80 HASEQTLRGVRGNKIAMIFQEPMVS--LNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQL 157 (529)
T ss_pred cCCHHHHHHHhcCceEEEecCchhh--cCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCccc
Confidence 31 24699999987421 12233555542 111 234555665544 579
Q ss_pred CHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEee
Q 024032 184 SEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKP 245 (273)
Q Consensus 184 SgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~ 245 (273)
|||||||. |+ +.+|++|||||||++||+. +.++++.++.|+|||+| .+||+|++|++|+++.
T Consensus 158 SgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~ 237 (529)
T PRK15134 158 SGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVE 237 (529)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEE
Confidence 99999987 33 7899999999999999999 34556655458999998 4689999999999999
Q ss_pred ecChhhhccC
Q 024032 246 LDATKRLFSA 255 (273)
Q Consensus 246 ~g~~~~l~~~ 255 (273)
.|++++++..
T Consensus 238 ~g~~~~~~~~ 247 (529)
T PRK15134 238 QNRAATLFSA 247 (529)
T ss_pred eCCHHHHhhC
Confidence 9999888653
No 259
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-35 Score=285.81 Aligned_cols=173 Identities=13% Similarity=0.147 Sum_probs=141.3
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC------C
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------S 138 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------~ 138 (273)
+++++|++++|. ++++ |+++||++++|++++|+||||||||||+++|+|+++ ++|+|.++|+++.. .
T Consensus 4 ~l~~~~l~~~~~--~~~i----l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~ 77 (501)
T PRK11288 4 YLSFDGIGKTFP--GVKA----LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAAL 77 (501)
T ss_pred eEEEeeeEEEEC--CEEE----EeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHH
Confidence 689999999994 4567 999999999999999999999999999999999998 99999999998752 2
Q ss_pred CccEEEEeccchhhhccCCcccccccccC----------C----HHHHHHHHHHhc---------ccCCHHHHHHH---H
Q 024032 139 SHTITMYMEEHNVMRSLQSGFCVYDSRGF----------N----YNRVHEGLEELS---------SWMSEGVHHNQ---R 192 (273)
Q Consensus 139 ~~~i~~v~q~~~~~~~~~~~~tv~en~~~----------~----~~~~~~~l~~~~---------~~LSgGqkq~~---r 192 (273)
++.++|++|++.+ +..+|+.+|..+ + .+++.++++.++ .+||||||||. |
T Consensus 78 ~~~i~~v~q~~~~----~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lar 153 (501)
T PRK11288 78 AAGVAIIYQELHL----VPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAK 153 (501)
T ss_pred hCCEEEEEechhc----cCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHH
Confidence 4679999998765 344588777321 1 124556666665 67999999987 3
Q ss_pred h-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecCh
Q 024032 193 C-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDAT 249 (273)
Q Consensus 193 ~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~ 249 (273)
+ +.+|++|||||||++||+. +.++++.++ |.|||++ .+||++++|++|+++..++.
T Consensus 154 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 154 ALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAE-GRVILYVSHRMEEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred HHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCc
Confidence 3 7899999999999999999 335556544 8999998 45899999999999876653
No 260
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.8e-35 Score=262.62 Aligned_cols=180 Identities=15% Similarity=0.241 Sum_probs=142.6
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc------CccEEEECCeeCC-
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSG- 136 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~------~~G~I~i~g~~i~- 136 (273)
...++++|++++|. ++++ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++.
T Consensus 14 ~~~l~~~~l~~~~~--~~~v----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~ 87 (265)
T PRK14252 14 QQKSEVNKLNFYYG--GYQA----LKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNI 87 (265)
T ss_pred CceEEEEEEEEEEC--Ceee----eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccc
Confidence 45799999999995 4567 999999999999999999999999999999999975 4899999987653
Q ss_pred --------CCCccEEEEeccchhhhccCCcccccccccC-------C-----HHHHHHHHHHhc-------------ccC
Q 024032 137 --------NSSHTITMYMEEHNVMRSLQSGFCVYDSRGF-------N-----YNRVHEGLEELS-------------SWM 183 (273)
Q Consensus 137 --------~~~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~-----~~~~~~~l~~~~-------------~~L 183 (273)
..++.+++++|++.++ ..|++||..+ . .+.+.++++.++ ..|
T Consensus 88 ~~~~~~~~~~~~~i~~~~q~~~~~-----~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~L 162 (265)
T PRK14252 88 LSPEVDPIEVRMRISMVFQKPNPF-----PKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNL 162 (265)
T ss_pred cccccCHHHHhccEEEEccCCcCC-----cchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccC
Confidence 1356789999987643 2377777321 1 123344444332 569
Q ss_pred CHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEee
Q 024032 184 SEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKP 245 (273)
Q Consensus 184 SgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~ 245 (273)
|+||+||. |+ +.+|++|||||||++||+. +.++++.+ +.|||++ .+||++++|++|++++
T Consensus 163 S~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~--~~tiiivth~~~~~~~~~d~i~~l~~G~i~~ 240 (265)
T PRK14252 163 SGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN--KVTILIVTHNMQQAARVSDYTAYMYMGELIE 240 (265)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh--CCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 99999986 33 7899999999999999999 33555543 6788888 4689999999999999
Q ss_pred ecChhhhccCh
Q 024032 246 LDATKRLFSAP 256 (273)
Q Consensus 246 ~g~~~~l~~~~ 256 (273)
.|++++++.++
T Consensus 241 ~g~~~~~~~~~ 251 (265)
T PRK14252 241 FGATDTIFIKP 251 (265)
T ss_pred eCCHHHHHhCC
Confidence 99999987543
No 261
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1.9e-35 Score=317.00 Aligned_cols=198 Identities=13% Similarity=0.126 Sum_probs=153.6
Q ss_pred hccchhhhhhhhHHHHHHHhchhhhc-------cCCCCceEEEEEEEEeecCC-eeeeccceeeeeeEEcCCcEEEEEcC
Q 024032 35 LKLDLPNVSTLTPRLRVLREMERLAL-------IAPDGLNELRHKFLSYRSGD-FWIPIGGIQKGGMDIPPVITILLMGF 106 (273)
Q Consensus 35 ~~~~~~~~~~~~~r~~~~~~~~~~~~-------~~~~~~i~~~~v~~~y~~g~-~~v~~~~L~~is~~i~~Ge~~aivGp 106 (273)
....++.+.++..|+.++++.++... ......++++||+|+|+... .++ |+++||+|++|+++||+||
T Consensus 344 ~~~~~~~a~~a~~ri~~ii~~~~~~~~~~~~~~~~~~~~I~~~nVsf~Y~~~~~~~v----L~~isl~i~~Ge~vaIvG~ 419 (1466)
T PTZ00265 344 NITEYMKSLEATNSLYEIINRKPLVENNDDGKKLKDIKKIQFKNVRFHYDTRKDVEI----YKDLNFTLTEGKTYAFVGE 419 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCccCCCCCcEEEEEEEEEcCCCCCCce----eccceEEEcCCCEEEEECC
Confidence 34567789999999999987654210 01113689999999997432 346 9999999999999999999
Q ss_pred CCChHHHHHHHHhhCcc-CccEEEE-CCeeCCC-----CCccEEEEeccchhhhccCCcccccccccC------------
Q 024032 107 SGSGKSSLVNLMYSVLS-RSGLVLF-AQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSRGF------------ 167 (273)
Q Consensus 107 nGsGKSTLl~ll~gl~~-~~G~I~i-~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~~~------------ 167 (273)
||||||||+++|+|+++ ++|+|++ +|.++.. +|+.+++|+|++.+| ..|++||..+
T Consensus 420 SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF-----~~TI~eNI~~g~~~~~~~~~~~ 494 (1466)
T PTZ00265 420 SGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLF-----SNSIKNNIKYSLYSLKDLEALS 494 (1466)
T ss_pred CCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccch-----hccHHHHHHhcCCCccccchhc
Confidence 99999999999999999 9999999 5677653 567899999998854 3478887322
Q ss_pred --------------------------------------------------CHHHHHHHHHHhc-----------------
Q 024032 168 --------------------------------------------------NYNRVHEGLEELS----------------- 180 (273)
Q Consensus 168 --------------------------------------------------~~~~~~~~l~~~~----------------- 180 (273)
+.+++.++++.++
T Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg 574 (1466)
T PTZ00265 495 NYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVG 574 (1466)
T ss_pred cccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeC
Confidence 1234555555442
Q ss_pred ---ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeC
Q 024032 181 ---SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKA 240 (273)
Q Consensus 181 ---~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~ 240 (273)
..||||||||. |+ +++|+||||||||++||+. +.++++.++.|+|+|+| ..||+|++|++
T Consensus 575 ~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~ 654 (1466)
T PTZ00265 575 SNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSN 654 (1466)
T ss_pred CCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeC
Confidence 57999999987 44 8999999999999999999 23444543237899888 56899999998
Q ss_pred C
Q 024032 241 G 241 (273)
Q Consensus 241 G 241 (273)
|
T Consensus 655 g 655 (1466)
T PTZ00265 655 R 655 (1466)
T ss_pred C
Confidence 6
No 262
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=2.4e-35 Score=251.65 Aligned_cols=154 Identities=12% Similarity=0.177 Sum_probs=126.2
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC------C
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------S 138 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------~ 138 (273)
+++++|++++| + |+++||++++|++++|+||||||||||+++|+|+++ ++|+|.++|.++.. .
T Consensus 4 ~l~~~~l~~~~------~----l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 73 (182)
T cd03215 4 VLEVRGLSVKG------A----VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAI 73 (182)
T ss_pred EEEEeccEEEe------e----ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHH
Confidence 58999999987 5 999999999999999999999999999999999999 99999999998753 2
Q ss_pred CccEEEEeccchhhhccCCcccccccccCCHHHHHHHHHHhcccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH--
Q 024032 139 SHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK-- 212 (273)
Q Consensus 139 ~~~i~~v~q~~~~~~~~~~~~tv~en~~~~~~~~~~~l~~~~~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~-- 212 (273)
++.++|++|++.. +.+++..|++||..... .||+||+||. |+ +.+|++|||||||++||+.
T Consensus 74 ~~~i~~~~q~~~~-~~~~~~~t~~e~l~~~~------------~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~ 140 (182)
T cd03215 74 RAGIAYVPEDRKR-EGLVLDLSVAENIALSS------------LLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAK 140 (182)
T ss_pred hCCeEEecCCccc-CcccCCCcHHHHHHHHh------------hcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHH
Confidence 4579999998530 00244568888743321 1999999986 33 7899999999999999999
Q ss_pred ----HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeE
Q 024032 213 ----SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDS 243 (273)
Q Consensus 213 ----~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i 243 (273)
+.++++.++ +.|+|++ .+||++++|++|++
T Consensus 141 ~~l~~~l~~~~~~-~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 141 AEIYRLIRELADA-GKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred HHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 335555544 7899888 56899999999974
No 263
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=3.5e-35 Score=258.40 Aligned_cols=173 Identities=16% Similarity=0.211 Sum_probs=136.4
Q ss_pred ceEEEEEEEEeecCC--eeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc----CccEEEECCeeCCC--
Q 024032 66 LNELRHKFLSYRSGD--FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS----RSGLVLFAQTSSGN-- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~--~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~----~~G~I~i~g~~i~~-- 137 (273)
.++++++++.|...+ +++ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~----l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~ 78 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARI----LNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQ 78 (226)
T ss_pred cceeecceeeeecCcccccc----ccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHH
Confidence 467899999996542 556 999999999999999999999999999999999975 79999999998752
Q ss_pred CCccEEEEeccchhhhccCCcccccccccC----------CH----HHHHH-HHHHhc---------ccCCHHHHHHH--
Q 024032 138 SSHTITMYMEEHNVMRSLQSGFCVYDSRGF----------NY----NRVHE-GLEELS---------SWMSEGVHHNQ-- 191 (273)
Q Consensus 138 ~~~~i~~v~q~~~~~~~~~~~~tv~en~~~----------~~----~~~~~-~l~~~~---------~~LSgGqkq~~-- 191 (273)
.++.+++++|++.. +..+|+.||..+ .. ..+.+ .++.++ ..||+||+||.
T Consensus 79 ~~~~i~~~~q~~~~----~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~l 154 (226)
T cd03234 79 FQKCVAYVRQDDIL----LPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSI 154 (226)
T ss_pred hcccEEEeCCCCcc----CcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHH
Confidence 46779999998775 344588887321 11 11222 444443 67999999987
Q ss_pred -Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc---------eeCCEEEEEeCCeEeeec
Q 024032 192 -RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS---------NIAEIYKALKAGDSKPLD 247 (273)
Q Consensus 192 -r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv---------~~ad~i~vl~~G~i~~~g 247 (273)
|+ +.+|++|||||||+|||+. +.++++.++ +.|+|++ ..||++++|++|++++.|
T Consensus 155 aral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~-~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 155 AVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARR-NRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 33 7899999999999999999 345555554 8898888 347999999999998764
No 264
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.8e-35 Score=260.06 Aligned_cols=178 Identities=19% Similarity=0.285 Sum_probs=141.0
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc------CccEEEECCeeCCC--
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSGN-- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~------~~G~I~i~g~~i~~-- 137 (273)
.++++|+++.|. ++.+ |+++||+|++||+++|+||||||||||+++|+|+.. ++|+|.++|.++..
T Consensus 3 ~l~~~~v~~~~~--~~~~----l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~ 76 (250)
T PRK14266 3 RIEVENLNTYFD--DAHI----LKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPA 76 (250)
T ss_pred EEEEEeEEEEeC--CeEE----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEccccc
Confidence 478999999984 4567 999999999999999999999999999999999863 68999999998742
Q ss_pred -----CCccEEEEeccchhhhccCCcccccccccC--------CH----HHHHHHHHHhc-------------ccCCHHH
Q 024032 138 -----SSHTITMYMEEHNVMRSLQSGFCVYDSRGF--------NY----NRVHEGLEELS-------------SWMSEGV 187 (273)
Q Consensus 138 -----~~~~i~~v~q~~~~~~~~~~~~tv~en~~~--------~~----~~~~~~l~~~~-------------~~LSgGq 187 (273)
.++.++|++|++.++ ..|+.+|..+ +. +.+.++++.++ ..||+||
T Consensus 77 ~~~~~~~~~i~~~~q~~~~~-----~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq 151 (250)
T PRK14266 77 VDVVELRKKVGMVFQKPNPF-----PKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQ 151 (250)
T ss_pred ccHHHHhhheEEEecCCccC-----cchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHH
Confidence 356799999998753 2377777321 11 12333344332 6799999
Q ss_pred HHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecCh
Q 024032 188 HHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDAT 249 (273)
Q Consensus 188 kq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~ 249 (273)
+||. |+ +++|++|||||||+|||+. +.++++. + +.|||++ ..+|++++|++|++++.|++
T Consensus 152 ~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~-~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~ 229 (250)
T PRK14266 152 QQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLK-E-DYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLT 229 (250)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCH
Confidence 9986 33 7899999999999999999 3345554 3 7888888 55899999999999999999
Q ss_pred hhhccCh
Q 024032 250 KRLFSAP 256 (273)
Q Consensus 250 ~~l~~~~ 256 (273)
+++...+
T Consensus 230 ~~~~~~~ 236 (250)
T PRK14266 230 DQIFINP 236 (250)
T ss_pred HHHHhCC
Confidence 9987554
No 265
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=1.4e-34 Score=258.11 Aligned_cols=175 Identities=17% Similarity=0.203 Sum_probs=135.6
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhC--cc-CccEEEECCeeCCCC----
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSV--LS-RSGLVLFAQTSSGNS---- 138 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl--~~-~~G~I~i~g~~i~~~---- 138 (273)
.++++++++.|+ ++.+ |+++||++++||++||+||||||||||+++|+|+ ++ ++|+|.++|.++...
T Consensus 7 ~l~~~~l~~~~~--~~~~----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~ 80 (252)
T CHL00131 7 ILEIKNLHASVN--ENEI----LKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEE 80 (252)
T ss_pred eEEEEeEEEEeC--CEEe----eecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhh
Confidence 689999999985 3556 9999999999999999999999999999999998 56 899999999987531
Q ss_pred -Cc-cEEEEeccchhhhccCCccccccccc--------------CC----HHHHHHHHHHhc----------c-cCCHHH
Q 024032 139 -SH-TITMYMEEHNVMRSLQSGFCVYDSRG--------------FN----YNRVHEGLEELS----------S-WMSEGV 187 (273)
Q Consensus 139 -~~-~i~~v~q~~~~~~~~~~~~tv~en~~--------------~~----~~~~~~~l~~~~----------~-~LSgGq 187 (273)
++ .+++++|++..++ ..|+.+|.. .. .+.+.++++.++ . .|||||
T Consensus 81 ~~~~~~~~~~q~~~~~~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~ 156 (252)
T CHL00131 81 RAHLGIFLAFQYPIEIP----GVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGE 156 (252)
T ss_pred hheeeEEEEeccccccc----cccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHH
Confidence 22 3678888876533 234444411 00 123344555433 3 499999
Q ss_pred HHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------ee-CCEEEEEeCCeEeeecC
Q 024032 188 HHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NI-AEIYKALKAGDSKPLDA 248 (273)
Q Consensus 188 kq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~-ad~i~vl~~G~i~~~g~ 248 (273)
+||. |+ +.+|++|||||||++||+. +.++++.++ |.|||++ .. ||++++|++|++++.|+
T Consensus 157 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~ 235 (252)
T CHL00131 157 KKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTS-ENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGD 235 (252)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecC
Confidence 9986 33 7899999999999999999 335555544 8899888 23 79999999999999998
Q ss_pred hhh
Q 024032 249 TKR 251 (273)
Q Consensus 249 ~~~ 251 (273)
++.
T Consensus 236 ~~~ 238 (252)
T CHL00131 236 AEL 238 (252)
T ss_pred hhh
Confidence 873
No 266
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=3.2e-35 Score=254.45 Aligned_cols=159 Identities=18% Similarity=0.207 Sum_probs=125.9
Q ss_pred EEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC---------C
Q 024032 69 LRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---------S 138 (273)
Q Consensus 69 ~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---------~ 138 (273)
++|+++.|+ ++++ |+++||++++||+++|+||||||||||+++|+|+++ ++|+|.++|+++.. .
T Consensus 1 i~~l~~~~~--~~~~----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 74 (206)
T TIGR03608 1 LKNISKKFG--DKII----LDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFR 74 (206)
T ss_pred CcceEEEEC--CEEE----EeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHH
Confidence 468888884 4567 999999999999999999999999999999999999 99999999998531 2
Q ss_pred CccEEEEeccchhhhccCCcccccccccC-------C----HHHHHHHHHHhc---------ccCCHHHHHHH---Hh-c
Q 024032 139 SHTITMYMEEHNVMRSLQSGFCVYDSRGF-------N----YNRVHEGLEELS---------SWMSEGVHHNQ---RC-L 194 (273)
Q Consensus 139 ~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~----~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l 194 (273)
++.+++++|++.++ ...|++||..+ . .+++.++++.++ .+||+||+||. |+ +
T Consensus 75 ~~~i~~~~q~~~~~----~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~ 150 (206)
T TIGR03608 75 REKLGYLFQNFALI----ENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAIL 150 (206)
T ss_pred HhCeeEEecchhhc----cCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHH
Confidence 45799999998753 34588887422 1 233455666654 67999999986 33 7
Q ss_pred CCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEE
Q 024032 195 RSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKAL 238 (273)
Q Consensus 195 ~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl 238 (273)
.+|++|||||||++||+. +.++++.++ |.|||++ ..||++++|
T Consensus 151 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 151 KDPPLILADEPTGSLDPKNRDEVLDLLLELNDE-GKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred cCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHhhcCEEEeC
Confidence 899999999999999999 335555554 8899888 456777664
No 267
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-34 Score=260.88 Aligned_cols=187 Identities=19% Similarity=0.279 Sum_probs=144.2
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECC------eeCC
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQ------TSSG 136 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g------~~i~ 136 (273)
...+++++++++| +++.+ |+++||++++||+++|+||||||||||+++|+|+++ ++|+|.++| .++.
T Consensus 8 ~~~i~~~~~~~~~--~~~~~----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~ 81 (257)
T PRK14246 8 EDVFNISRLYLYI--NDKAI----LKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIF 81 (257)
T ss_pred hhheeeeeEEEec--CCcee----EeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccc
Confidence 3479999999998 45667 999999999999999999999999999999999998 887666655 4443
Q ss_pred C-----CCccEEEEeccchhhhccCCccccccccc-------C-CH----HHHHHHHHHhc-------------ccCCHH
Q 024032 137 N-----SSHTITMYMEEHNVMRSLQSGFCVYDSRG-------F-NY----NRVHEGLEELS-------------SWMSEG 186 (273)
Q Consensus 137 ~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~~-------~-~~----~~~~~~l~~~~-------------~~LSgG 186 (273)
. .++.++|++|++.+ +...|+.+|.. . .. +.+.++++.++ ..||+|
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~----~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G 157 (257)
T PRK14246 82 QIDAIKLRKEVGMVFQQPNP----FPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGG 157 (257)
T ss_pred cCCHHHHhcceEEEccCCcc----CCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHH
Confidence 2 35679999998775 33458887732 1 12 12344444432 569999
Q ss_pred HHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecC
Q 024032 187 VHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDA 248 (273)
Q Consensus 187 qkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~ 248 (273)
||||. |+ +.+|+++||||||++||+. +.+.++.+ +.|||++ ..||++++|++|+++..|+
T Consensus 158 ~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~ 235 (257)
T PRK14246 158 QQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN--EIAIVIVSHNPQQVARVADYVAFLYNGELVEWGS 235 (257)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CcEEEEEECCHHHHHHhCCEEEEEECCEEEEECC
Confidence 99986 33 8999999999999999999 33445543 6899888 5689999999999999999
Q ss_pred hhhhccChh--hHHHh
Q 024032 249 TKRLFSAPG--LRKCS 262 (273)
Q Consensus 249 ~~~l~~~~~--l~~~~ 262 (273)
++++.+++. +.+.|
T Consensus 236 ~~~~~~~~~~~~~~~~ 251 (257)
T PRK14246 236 SNEIFTSPKNELTEKY 251 (257)
T ss_pred HHHHHhCCCcHHHHHH
Confidence 999986543 44444
No 268
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=2.2e-34 Score=241.92 Aligned_cols=137 Identities=18% Similarity=0.210 Sum_probs=116.3
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC------CC
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------SS 139 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------~~ 139 (273)
++++|++++|. ++++ |+++||++++||+++|+||||||||||+++|+|+++ ++|+|.++|+++.. .+
T Consensus 1 l~~~~l~~~~~--~~~v----l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~ 74 (163)
T cd03216 1 LELRGITKRFG--GVKA----LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARR 74 (163)
T ss_pred CEEEEEEEEEC--CeEE----EeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHh
Confidence 47899999994 4567 999999999999999999999999999999999999 99999999988753 12
Q ss_pred ccEEEEeccchhhhccCCcccccccccCCHHHHHHHHHHhcccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH---
Q 024032 140 HTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK--- 212 (273)
Q Consensus 140 ~~i~~v~q~~~~~~~~~~~~tv~en~~~~~~~~~~~l~~~~~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~--- 212 (273)
+.+++++| ||+||+||. |+ +.+|++|||||||++||+.
T Consensus 75 ~~i~~~~q-----------------------------------LS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~ 119 (163)
T cd03216 75 AGIAMVYQ-----------------------------------LSVGERQMVEIARALARNARLLILDEPTAALTPAEVE 119 (163)
T ss_pred cCeEEEEe-----------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHH
Confidence 34555554 999999986 33 7999999999999999999
Q ss_pred ---HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEee
Q 024032 213 ---SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKP 245 (273)
Q Consensus 213 ---~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~ 245 (273)
+.++++.++ +.|+|++ ..||++++|++|++++
T Consensus 120 ~l~~~l~~~~~~-~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 120 RLFKVIRRLRAQ-GVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred HHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 345556544 8899888 4589999999999874
No 269
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=6.2e-35 Score=285.79 Aligned_cols=178 Identities=15% Similarity=0.195 Sum_probs=140.2
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCc--c-CccEEEEC------------
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVL--S-RSGLVLFA------------ 131 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~--~-~~G~I~i~------------ 131 (273)
++++|++++| +++++ |+++||+|.+|++++|+||||||||||+|+|+|++ + ++|+|.++
T Consensus 1 l~~~~l~~~~--~~~~~----l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~ 74 (520)
T TIGR03269 1 IEVKNLTKKF--DGKEV----LKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVER 74 (520)
T ss_pred CEEEEEEEEE--CCeEe----eeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccc
Confidence 5789999998 34567 99999999999999999999999999999999996 6 89999997
Q ss_pred -----------CeeCC---------------CCCccEEEEecc-chhhhccCCccccccccc-------CC----HHHHH
Q 024032 132 -----------QTSSG---------------NSSHTITMYMEE-HNVMRSLQSGFCVYDSRG-------FN----YNRVH 173 (273)
Q Consensus 132 -----------g~~i~---------------~~~~~i~~v~q~-~~~~~~~~~~~tv~en~~-------~~----~~~~~ 173 (273)
|.++. ..++.+++++|+ +.+ +..+|+++|.. .. .+++.
T Consensus 75 ~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~----~~~~tv~~~l~~~~~~~~~~~~~~~~~~~ 150 (520)
T TIGR03269 75 PSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFAL----YGDDTVLDNVLEALEEIGYEGKEAVGRAV 150 (520)
T ss_pred ccccccccccccccccccchhhhccCHHHHHHhhhcEEEEecccccc----CCCCCHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 22220 124568999997 444 33457777732 22 23455
Q ss_pred HHHHHhc---------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-----
Q 024032 174 EGLEELS---------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS----- 229 (273)
Q Consensus 174 ~~l~~~~---------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv----- 229 (273)
++++.++ .+||||||||. |+ +.+|++|||||||++||+. +.++++.++.|.|||+|
T Consensus 151 ~~l~~~gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~ 230 (520)
T TIGR03269 151 DLIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPE 230 (520)
T ss_pred HHHHHcCChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH
Confidence 5666655 78999999987 33 7899999999999999999 33566655558999998
Q ss_pred ---eeCCEEEEEeCCeEeeecChhhhcc
Q 024032 230 ---NIAEIYKALKAGDSKPLDATKRLFS 254 (273)
Q Consensus 230 ---~~ad~i~vl~~G~i~~~g~~~~l~~ 254 (273)
.+||++++|++|+++..|++++++.
T Consensus 231 ~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 258 (520)
T TIGR03269 231 VIEDLSDKAIWLENGEIKEEGTPDEVVA 258 (520)
T ss_pred HHHHhcCEEEEEeCCEEeeecCHHHHHH
Confidence 5689999999999999998877654
No 270
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=2.1e-34 Score=256.23 Aligned_cols=180 Identities=14% Similarity=0.155 Sum_probs=133.8
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCc--c-CccEEEECCeeCCC-----
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVL--S-RSGLVLFAQTSSGN----- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~--~-~~G~I~i~g~~i~~----- 137 (273)
+++++|+++.|+ ++++ |+++||+|++|++++|+||||||||||+++|+|++ + ++|+|.++|.++..
T Consensus 1 ~i~~~nl~~~~~--~~~~----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~ 74 (248)
T PRK09580 1 MLSIKDLHVSVE--DKAI----LRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPED 74 (248)
T ss_pred CeEEEEEEEEeC--Ceee----eecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHH
Confidence 378999999985 4556 99999999999999999999999999999999994 6 89999999988753
Q ss_pred -CCccEEEEeccchhhhccC---Ccccccccc----c---CC----HHHHHHHHHHhc-----------ccCCHHHHHHH
Q 024032 138 -SSHTITMYMEEHNVMRSLQ---SGFCVYDSR----G---FN----YNRVHEGLEELS-----------SWMSEGVHHNQ 191 (273)
Q Consensus 138 -~~~~i~~v~q~~~~~~~~~---~~~tv~en~----~---~~----~~~~~~~l~~~~-----------~~LSgGqkq~~ 191 (273)
.+..+++++|++..++.+. +..++.++. . .. .+.+.+.++.++ ..||||||||.
T Consensus 75 ~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv 154 (248)
T PRK09580 75 RAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRN 154 (248)
T ss_pred HhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHH
Confidence 1245899999876533210 000111110 0 11 122334444332 26999999986
Q ss_pred ---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------ee-CCEEEEEeCCeEeeecChhhh
Q 024032 192 ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NI-AEIYKALKAGDSKPLDATKRL 252 (273)
Q Consensus 192 ---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~-ad~i~vl~~G~i~~~g~~~~l 252 (273)
|+ +++|++|||||||++||+. +.++.+.++ +.|||++ .. +|++++|++|+++..|+++.+
T Consensus 155 ~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~-~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~~~ 233 (248)
T PRK09580 155 DILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDG-KRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLV 233 (248)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHHHH
Confidence 33 7999999999999999999 334455544 7899888 23 799999999999999988744
No 271
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=5.4e-35 Score=286.21 Aligned_cols=183 Identities=15% Similarity=0.194 Sum_probs=143.9
Q ss_pred CCceEEEEEEEEeec---CCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEEC-Cee---C
Q 024032 64 DGLNELRHKFLSYRS---GDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFA-QTS---S 135 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~---g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~-g~~---i 135 (273)
..+++++|++++|.. +++++ |+++||+|++|++++|+||||||||||+|+|+|+++ ++|+|.++ |.+ +
T Consensus 277 ~~~l~~~~l~~~~~~~~~~~~~i----l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~ 352 (520)
T TIGR03269 277 EPIIKVRNVSKRYISVDRGVVKA----VDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDM 352 (520)
T ss_pred CceEEEeccEEEeccCCCCCceE----EeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccc
Confidence 347999999999953 23456 999999999999999999999999999999999998 99999995 532 2
Q ss_pred C--------CCCccEEEEeccchhhhccCCcccccccccC------CH----HHHHHHHHHhc--------------ccC
Q 024032 136 G--------NSSHTITMYMEEHNVMRSLQSGFCVYDSRGF------NY----NRVHEGLEELS--------------SWM 183 (273)
Q Consensus 136 ~--------~~~~~i~~v~q~~~~~~~~~~~~tv~en~~~------~~----~~~~~~l~~~~--------------~~L 183 (273)
. ..+++++|++|++.+ +..+||++|..+ .. +++.++++.++ .+|
T Consensus 353 ~~~~~~~~~~~~~~i~~v~q~~~l----~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~L 428 (520)
T TIGR03269 353 TKPGPDGRGRAKRYIGILHQEYDL----YPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDEL 428 (520)
T ss_pred cccchhhHHHHhhhEEEEccCccc----CCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhC
Confidence 1 124569999998764 344588887421 11 23444555543 479
Q ss_pred CHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEee
Q 024032 184 SEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKP 245 (273)
Q Consensus 184 SgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~ 245 (273)
|||||||. |+ +.+|++|||||||++||+. +.++++.++.|.|||++ .+||++++|++|+++.
T Consensus 429 SgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~ 508 (520)
T TIGR03269 429 SEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVK 508 (520)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999987 33 7899999999999999999 33555555558999988 5689999999999999
Q ss_pred ecChhhhcc
Q 024032 246 LDATKRLFS 254 (273)
Q Consensus 246 ~g~~~~l~~ 254 (273)
.|+++++++
T Consensus 509 ~g~~~~~~~ 517 (520)
T TIGR03269 509 IGDPEEIVE 517 (520)
T ss_pred ECCHHHHHh
Confidence 999887753
No 272
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-34 Score=264.80 Aligned_cols=180 Identities=21% Similarity=0.269 Sum_probs=141.2
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc------CccEEEECCeeCCC
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSGN 137 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~------~~G~I~i~g~~i~~ 137 (273)
+..++++|+++.|. ++.+ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++..
T Consensus 43 ~~~l~i~nl~~~~~--~~~i----L~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~ 116 (305)
T PRK14264 43 DAKLSVEDLDVYYG--DDHA----LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQ 116 (305)
T ss_pred CceEEEEEEEEEeC--Ceee----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 34789999999984 4556 999999999999999999999999999999999973 69999999988742
Q ss_pred -------CCccEEEEeccchhhhccCCcccccccccCC------------------------HHHHHHHHHHhc------
Q 024032 138 -------SSHTITMYMEEHNVMRSLQSGFCVYDSRGFN------------------------YNRVHEGLEELS------ 180 (273)
Q Consensus 138 -------~~~~i~~v~q~~~~~~~~~~~~tv~en~~~~------------------------~~~~~~~l~~~~------ 180 (273)
.++.++|++|++.++ ..|+++|..+. .+.+.++++.++
T Consensus 117 ~~~~~~~~~~~i~~v~q~~~l~-----~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 191 (305)
T PRK14264 117 DGVNLVELRKRVGMVFQSPNPF-----PKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVN 191 (305)
T ss_pred ccccHHHHhhceEEEccCCccc-----cccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhh
Confidence 346799999987643 23777763210 122344444331
Q ss_pred -------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEE
Q 024032 181 -------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIY 235 (273)
Q Consensus 181 -------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i 235 (273)
..|||||+||. |+ +++|++|||||||+|||+. +.++++.+ +.|||++ .+||++
T Consensus 192 ~~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~--~~tiiivtH~~~~i~~~~d~i 269 (305)
T PRK14264 192 DRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE--EYTVVVVTHNMQQAARISDQT 269 (305)
T ss_pred HHhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEEcCHHHHHHhcCEE
Confidence 67999999986 33 7899999999999999999 33555554 4788888 568996
Q ss_pred -EEEeCCeEeeecChhhhccCh
Q 024032 236 -KALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 236 -~vl~~G~i~~~g~~~~l~~~~ 256 (273)
++|++|++++.|+++++++.+
T Consensus 270 ~~~l~~G~i~~~g~~~~~~~~~ 291 (305)
T PRK14264 270 AVFLTGGELVEYDDTDKIFENP 291 (305)
T ss_pred EEEecCCEEEEeCCHHHHHhCc
Confidence 578999999999999987643
No 273
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.9e-35 Score=285.13 Aligned_cols=183 Identities=13% Similarity=0.179 Sum_probs=144.1
Q ss_pred CceEEEEEEEEeec-CCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc--CccEEEECCeeCCC----
Q 024032 65 GLNELRHKFLSYRS-GDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS--RSGLVLFAQTSSGN---- 137 (273)
Q Consensus 65 ~~i~~~~v~~~y~~-g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~--~~G~I~i~g~~i~~---- 137 (273)
..++++|++++|.. +++.+ |+++||+|++||++||+||||||||||+|+|+|+++ ++|+|.++|+++..
T Consensus 258 ~~l~~~~l~~~~~~~~~~~v----l~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~ 333 (506)
T PRK13549 258 VILEVRNLTAWDPVNPHIKR----VDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQ 333 (506)
T ss_pred ceEEEecCcccccccccccc----ccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHH
Confidence 36899999999853 23456 999999999999999999999999999999999986 79999999998752
Q ss_pred --CCccEEEEeccchhhhccCCcccccccccC------------CH----HHHHHHHHHhc----------ccCCHHHHH
Q 024032 138 --SSHTITMYMEEHNVMRSLQSGFCVYDSRGF------------NY----NRVHEGLEELS----------SWMSEGVHH 189 (273)
Q Consensus 138 --~~~~i~~v~q~~~~~~~~~~~~tv~en~~~------------~~----~~~~~~l~~~~----------~~LSgGqkq 189 (273)
.++.++|++|++... .++..+|+.+|..+ +. +.+.+.++.++ .+|||||||
T Consensus 334 ~~~~~~i~~v~q~~~~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kq 412 (506)
T PRK13549 334 QAIAQGIAMVPEDRKRD-GIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQ 412 (506)
T ss_pred HHHHCCCEEeCcchhhC-CCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHH
Confidence 235689999986310 01344577776321 11 23455666654 579999999
Q ss_pred HH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhh
Q 024032 190 NQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKR 251 (273)
Q Consensus 190 ~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~ 251 (273)
|. |+ +.+|++|||||||+|||+. +.++.++++ |.|||++ .+||++++|++|+++..|++++
T Consensus 413 rv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 491 (506)
T PRK13549 413 KAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQ-GVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHN 491 (506)
T ss_pred HHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHC-CCEEEEECCCHHHHHHhCCEEEEEECCEEEEEecccc
Confidence 87 33 7899999999999999999 345566655 8999998 5689999999999999998887
Q ss_pred hc
Q 024032 252 LF 253 (273)
Q Consensus 252 l~ 253 (273)
+.
T Consensus 492 ~~ 493 (506)
T PRK13549 492 LT 493 (506)
T ss_pred CC
Confidence 64
No 274
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=1.3e-34 Score=255.61 Aligned_cols=166 Identities=18% Similarity=0.195 Sum_probs=130.4
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-----CccEEEECCeeCCC--C-CccEEEEeccch-hhhccCCc
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-----RSGLVLFAQTSSGN--S-SHTITMYMEEHN-VMRSLQSG 158 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-----~~G~I~i~g~~i~~--~-~~~i~~v~q~~~-~~~~~~~~ 158 (273)
|+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|+++.. . ++.+++++|++. .+ ...
T Consensus 2 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~---~~~ 78 (230)
T TIGR02770 2 VQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAF---NPL 78 (230)
T ss_pred ccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhc---Ccc
Confidence 899999999999999999999999999999999987 49999999998753 2 357999999974 22 223
Q ss_pred ccccccc-------cC-C---HHHHHHHHHHhc------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCH
Q 024032 159 FCVYDSR-------GF-N---YNRVHEGLEELS------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDL 211 (273)
Q Consensus 159 ~tv~en~-------~~-~---~~~~~~~l~~~~------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~ 211 (273)
+|+.+|. +. . .+++.+.++.++ ..||||||||. |+ +++|++|||||||+|||+
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~ 158 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDV 158 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCH
Confidence 4655541 11 1 223445555443 56999999987 33 789999999999999999
Q ss_pred H------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 212 K------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 212 ~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
. +.++++.++.|.|||++ .+||++++|++|+++..|++++++..+
T Consensus 159 ~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 217 (230)
T TIGR02770 159 VNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNP 217 (230)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence 9 33555554447899988 468999999999999999999987543
No 275
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.3e-35 Score=245.67 Aligned_cols=148 Identities=19% Similarity=0.268 Sum_probs=121.9
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCc
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSH 140 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~ 140 (273)
++++++++.|......+ |+++||++++|++++|+||||||||||+++|+|+++ ++|+|.++|+++.. .++
T Consensus 1 l~~~~l~~~~~~~~~~~----l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (171)
T cd03228 1 IEFKNVSFSYPGRPKPV----LKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRK 76 (171)
T ss_pred CEEEEEEEEcCCCCccc----ccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHh
Confidence 46899999985432256 999999999999999999999999999999999999 99999999998753 345
Q ss_pred cEEEEeccchhhhccCCcccccccccCCHHHHHHHHHHhcccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH----
Q 024032 141 TITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK---- 212 (273)
Q Consensus 141 ~i~~v~q~~~~~~~~~~~~tv~en~~~~~~~~~~~l~~~~~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~---- 212 (273)
.+++++|++.++ ..|++||. ||+||+||. |+ +.+|++|||||||++||+.
T Consensus 77 ~i~~~~~~~~~~-----~~t~~e~l-----------------LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~ 134 (171)
T cd03228 77 NIAYVPQDPFLF-----SGTIRENI-----------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEAL 134 (171)
T ss_pred hEEEEcCCchhc-----cchHHHHh-----------------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHH
Confidence 789999987542 34777664 999999986 33 7899999999999999999
Q ss_pred --HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCCe
Q 024032 213 --SSPKYVLRRVDFAMVVS-------NIAEIYKALKAGD 242 (273)
Q Consensus 213 --~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~ 242 (273)
+.++++. + +.|+|++ ..||++++|++|+
T Consensus 135 l~~~l~~~~-~-~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 135 ILEALRALA-K-GKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred HHHHHHHhc-C-CCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 2344443 3 6888888 3389999999885
No 276
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=2.9e-34 Score=248.60 Aligned_cols=161 Identities=14% Similarity=0.137 Sum_probs=128.7
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC----CCcc
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN----SSHT 141 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~----~~~~ 141 (273)
++++|+++.|. ++.+ |+++||+|++||++||+||||||||||+++|+|+++ ++|+|.++|.++.. .++.
T Consensus 1 l~i~~l~~~~~--~~~~----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (201)
T cd03231 1 LEADELTCERD--GRAL----FSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARG 74 (201)
T ss_pred CEEEEEEEEeC--Ccee----eccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhh
Confidence 47899999984 4566 999999999999999999999999999999999999 99999999988642 4567
Q ss_pred EEEEeccchhhhccCCcccccccccC-----CHHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCCEEEEc
Q 024032 142 ITMYMEEHNVMRSLQSGFCVYDSRGF-----NYNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDDCALMK 203 (273)
Q Consensus 142 i~~v~q~~~~~~~~~~~~tv~en~~~-----~~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~iLlLD 203 (273)
+++++|++.+ ++..|++||..+ ..+.+.++++.++ ..||||||||. |+ +.+|++||||
T Consensus 75 i~~~~q~~~~----~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllD 150 (201)
T cd03231 75 LLYLGHAPGI----KTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILD 150 (201)
T ss_pred eEEecccccc----CCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9999998764 345688887422 3445666777665 67999999986 33 7899999999
Q ss_pred CcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEE
Q 024032 204 NDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKAL 238 (273)
Q Consensus 204 EPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl 238 (273)
|||++||+. +.++++.++ |.|+|++ ..+++++++
T Consensus 151 EPt~~LD~~~~~~l~~~l~~~~~~-g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 151 EPTTALDKAGVARFAEAMAGHCAR-GGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCchhhhhccceeEec
Confidence 999999999 334455444 8898888 335666655
No 277
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=8.8e-35 Score=243.04 Aligned_cols=176 Identities=15% Similarity=0.148 Sum_probs=147.7
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC------
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------ 137 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------ 137 (273)
..|++++++++.+.+...+ .+|++|+|.|++||.+|||||||||||||+-+++|+.. ++|+|.+.|+++..
T Consensus 5 ~ii~~~~l~ktvg~~~~~l--~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~r 82 (228)
T COG4181 5 NIIEVHHLSKTVGQGEGEL--SILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDAR 82 (228)
T ss_pred ceeehhhhhhhhcCCCcce--eEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHH
Confidence 4789999999987665444 44999999999999999999999999999999999999 99999999998853
Q ss_pred ---CCccEEEEeccchhhhccCCcccccccccC-----------CHHHHHHHHHHhc---------ccCCHHHHHHH---
Q 024032 138 ---SSHTITMYMEEHNVMRSLQSGFCVYDSRGF-----------NYNRVHEGLEELS---------SWMSEGVHHNQ--- 191 (273)
Q Consensus 138 ---~~~~i~~v~q~~~~~~~~~~~~tv~en~~~-----------~~~~~~~~l~~~~---------~~LSgGqkq~~--- 191 (273)
..+++++|||...++ +++|..||... .+....+.++.++ .+|||||+||+
T Consensus 83 A~~R~~~vGfVFQSF~Li----p~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiA 158 (228)
T COG4181 83 AALRARHVGFVFQSFHLI----PNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALA 158 (228)
T ss_pred HHhhccceeEEEEeeecc----ccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHH
Confidence 347899999998874 45588998432 2344667788877 78999999987
Q ss_pred Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeEeee
Q 024032 192 RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKAGDSKPL 246 (273)
Q Consensus 192 r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~ 246 (273)
|+ ...|++|+.||||-+||-. .++-.++++.|.|+++| .-|+|++-|.+|++++.
T Consensus 159 RAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~~ 227 (228)
T COG4181 159 RAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVED 227 (228)
T ss_pred HHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceeccC
Confidence 44 6799999999999999998 44556777889999999 34799999999999753
No 278
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=1.5e-34 Score=246.35 Aligned_cols=155 Identities=17% Similarity=0.202 Sum_probs=120.7
Q ss_pred EEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCcc
Q 024032 68 ELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHT 141 (273)
Q Consensus 68 ~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~ 141 (273)
+++|++++|. ++++ |+++||++++|++++|+||||||||||+++|+|+++ ++|+|.++|.++.. .++.
T Consensus 1 ~~~~l~~~~~--~~~~----l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~ 74 (180)
T cd03214 1 EVENLSVGYG--GRTV----LDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARK 74 (180)
T ss_pred CeeEEEEEEC--Ceee----EeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHH
Confidence 4789999884 3566 999999999999999999999999999999999999 99999999998753 2334
Q ss_pred EEEEeccchhhhccCCcccccccccCCHHHHHHHHHHhcccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH-----
Q 024032 142 ITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK----- 212 (273)
Q Consensus 142 i~~v~q~~~~~~~~~~~~tv~en~~~~~~~~~~~l~~~~~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~----- 212 (273)
++|++| .+. . .++. +.++.....||+||+||. |+ +.+|+++||||||++||+.
T Consensus 75 i~~~~q---~l~--~--------~gl~-----~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~ 136 (180)
T cd03214 75 IAYVPQ---ALE--L--------LGLA-----HLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIEL 136 (180)
T ss_pred HhHHHH---HHH--H--------cCCH-----hHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHH
Confidence 666666 110 0 1111 122233477999999986 33 7899999999999999999
Q ss_pred -HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeee
Q 024032 213 -SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPL 246 (273)
Q Consensus 213 -~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~ 246 (273)
+.++++.++.+.|+|++ ..||++++|++|+++..
T Consensus 137 ~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~ 179 (180)
T cd03214 137 LELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQ 179 (180)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEec
Confidence 33455554437888888 46899999999998764
No 279
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4.6e-34 Score=247.75 Aligned_cols=153 Identities=12% Similarity=0.141 Sum_probs=124.3
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC----CCc
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN----SSH 140 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~----~~~ 140 (273)
++++++++++|. ++++ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++.. .++
T Consensus 1 ~l~~~~l~~~~~--~~~~----l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~ 74 (204)
T PRK13538 1 MLEARNLACERD--ERIL----FSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQ 74 (204)
T ss_pred CeEEEEEEEEEC--CEEE----EecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhh
Confidence 378999999984 4567 999999999999999999999999999999999999 99999999998753 346
Q ss_pred cEEEEeccchhhhccCCccccccccc--------CCHHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCCE
Q 024032 141 TITMYMEEHNVMRSLQSGFCVYDSRG--------FNYNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDDC 199 (273)
Q Consensus 141 ~i~~v~q~~~~~~~~~~~~tv~en~~--------~~~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~i 199 (273)
.+++++|++.+ +..+|+.||.. ...+.+.++++.++ ..|||||+||. ++ +++|++
T Consensus 75 ~~~~~~~~~~~----~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~l 150 (204)
T PRK13538 75 DLLYLGHQPGI----KTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPL 150 (204)
T ss_pred heEEeCCcccc----CcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCE
Confidence 78999988764 34458888732 12345566777665 67999999986 33 799999
Q ss_pred EEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc
Q 024032 200 ALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS 229 (273)
Q Consensus 200 LlLDEPts~LD~~------~~l~~l~~~~g~tiiiv 229 (273)
+||||||++||+. +.++++.++ +.|||++
T Consensus 151 lllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiii~ 185 (204)
T PRK13538 151 WILDEPFTAIDKQGVARLEALLAQHAEQ-GGMVILT 185 (204)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHHC-CCEEEEE
Confidence 9999999999999 335555544 7899888
No 280
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.8e-34 Score=276.90 Aligned_cols=178 Identities=18% Similarity=0.190 Sum_probs=147.0
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN----- 137 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~----- 137 (273)
...++++|++|+|+ +..+ |++|||++.+||++||+|.||||||||+|+|+|.++ ++|+|+++|+.+..
T Consensus 6 ~~ll~~~~i~K~Fg--gV~A----L~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~ 79 (500)
T COG1129 6 PPLLELRGISKSFG--GVKA----LDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRD 79 (500)
T ss_pred cceeeeecceEEcC--Ccee----eccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHH
Confidence 34789999999994 4445 999999999999999999999999999999999999 99999999998752
Q ss_pred -CCccEEEEeccchhhhccCCccccccccc-----------CCH----HHHHHHHHHhc---------ccCCHHHHHHH-
Q 024032 138 -SSHTITMYMEEHNVMRSLQSGFCVYDSRG-----------FNY----NRVHEGLEELS---------SWMSEGVHHNQ- 191 (273)
Q Consensus 138 -~~~~i~~v~q~~~~~~~~~~~~tv~en~~-----------~~~----~~~~~~l~~~~---------~~LSgGqkq~~- 191 (273)
...-|..++|+..++|+ +||.||.- .+. ++..++++.++ ..||.||||.+
T Consensus 80 A~~~GI~~V~QEl~L~p~----LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~Ve 155 (500)
T COG1129 80 ALAAGIATVHQELSLVPN----LSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVE 155 (500)
T ss_pred HHhCCcEEEeechhccCC----ccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHH
Confidence 34569999999998555 49999921 122 33445566554 68999999965
Q ss_pred --Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecC-hhhh
Q 024032 192 --RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDA-TKRL 252 (273)
Q Consensus 192 --r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~-~~~l 252 (273)
|+ ..++++||||||||+|+.. ..+++++++ |.+||+| .+||||.||++|+.+...+ ..++
T Consensus 156 IArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~-Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~~~~~ 233 (500)
T COG1129 156 IARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQ-GVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAET 233 (500)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecccccCC
Confidence 44 6799999999999999999 346777766 9999999 6799999999999998877 3444
No 281
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-34 Score=258.05 Aligned_cols=178 Identities=17% Similarity=0.256 Sum_probs=146.4
Q ss_pred EEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC---------CCcc
Q 024032 72 KFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---------SSHT 141 (273)
Q Consensus 72 v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---------~~~~ 141 (273)
+++++..|+.. =+++|+++.-.++||.|+||||||||+|+|+|+.+ ++|.|.++|.-+.+ .+++
T Consensus 4 ~~~~~~lG~~~------l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~Rr 77 (352)
T COG4148 4 LNFRQRLGNFA------LDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRR 77 (352)
T ss_pred EehhhhcCceE------EEEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhhe
Confidence 34555555532 36799999878999999999999999999999999 99999999986532 4688
Q ss_pred EEEEeccchhhhccCCcccccccccC-----CHHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCCEEEEc
Q 024032 142 ITMYMEEHNVMRSLQSGFCVYDSRGF-----NYNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDDCALMK 203 (273)
Q Consensus 142 i~~v~q~~~~~~~~~~~~tv~en~~~-----~~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~iLlLD 203 (273)
+|||||+..+||++ ||+.|..+ ......++.+.++ ..||||||||+ |+ ++.|++|+||
T Consensus 78 iGYVFQDARLFpH~----tVrgNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmD 153 (352)
T COG4148 78 IGYVFQDARLFPHY----TVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMD 153 (352)
T ss_pred eeeEeeccccccce----EEecchhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeec
Confidence 99999999987665 99999432 2334455555554 89999999997 44 8999999999
Q ss_pred CcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChhhH
Q 024032 204 NDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPGLR 259 (273)
Q Consensus 204 EPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~l~ 259 (273)
||.++||.. -.++++.++.++.|++| ++||+|++|++|++.+.|..++++..+.+.
T Consensus 154 EPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~~~~~ 223 (352)
T COG4148 154 EPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSPDFP 223 (352)
T ss_pred CchhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcCcccC
Confidence 999999988 34678888889999999 778999999999999999999999876543
No 282
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=6.3e-34 Score=248.76 Aligned_cols=166 Identities=16% Similarity=0.133 Sum_probs=132.1
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC--CCc
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN--SSH 140 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~--~~~ 140 (273)
+.+++++|++++|. ++.+ ++++||++++||+++|+||||||||||+++|+|+++ ++|+|.++|+++.. .++
T Consensus 9 ~~~l~~~~l~~~~~--~~~i----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~ 82 (214)
T PRK13543 9 PPLLAAHALAFSRN--EEPV----FGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSR 82 (214)
T ss_pred cceEEEeeEEEecC--Ccee----eecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhh
Confidence 45799999999984 3456 999999999999999999999999999999999999 99999999998763 345
Q ss_pred cEEEEeccchhhhccCCccccccccc-------C-CHHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCCE
Q 024032 141 TITMYMEEHNVMRSLQSGFCVYDSRG-------F-NYNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDDC 199 (273)
Q Consensus 141 ~i~~v~q~~~~~~~~~~~~tv~en~~-------~-~~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~i 199 (273)
.+++++|++.+ +...|+++|.. . ..+.+.+.++.++ ..||+|||||. |+ +.+|++
T Consensus 83 ~i~~~~q~~~~----~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l 158 (214)
T PRK13543 83 FMAYLGHLPGL----KADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPL 158 (214)
T ss_pred ceEEeecCccc----ccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 68999988664 33458888731 1 1234455666655 67999999986 33 789999
Q ss_pred EEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeC
Q 024032 200 ALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKA 240 (273)
Q Consensus 200 LlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~ 240 (273)
|||||||++||+. +.++++.++ |.|+|++ +.||++++++.
T Consensus 159 lllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 159 WLLDEPYANLDLEGITLVNRMISAHLRG-GGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEecChhhhhhhcceEEEEee
Confidence 9999999999999 334555544 8898888 56789988863
No 283
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=5.6e-34 Score=246.89 Aligned_cols=158 Identities=18% Similarity=0.237 Sum_probs=123.8
Q ss_pred eEEEEEEEEeecCC---eeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccE
Q 024032 67 NELRHKFLSYRSGD---FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (273)
Q Consensus 67 i~~~~v~~~y~~g~---~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i 142 (273)
++++|++++|..++ .++ |+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++| ++
T Consensus 1 l~~~~l~~~~~~~~~~~~~i----l~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g--------~i 68 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFT----LKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG--------SI 68 (204)
T ss_pred CEEeEEEEecCCCCccccce----eeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC--------EE
Confidence 47899999996432 256 999999999999999999999999999999999999 999999998 58
Q ss_pred EEEeccchhhhccCCcccccccccC----CHHHHHHHHHHhc--------------------ccCCHHHHHHH---Hh-c
Q 024032 143 TMYMEEHNVMRSLQSGFCVYDSRGF----NYNRVHEGLEELS--------------------SWMSEGVHHNQ---RC-L 194 (273)
Q Consensus 143 ~~v~q~~~~~~~~~~~~tv~en~~~----~~~~~~~~l~~~~--------------------~~LSgGqkq~~---r~-l 194 (273)
+|++|++.+ +..|++||... ..+...++++.++ ..||+||+||. |+ +
T Consensus 69 ~~~~q~~~l-----~~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~ 143 (204)
T cd03250 69 AYVSQEPWI-----QNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVY 143 (204)
T ss_pred EEEecCchh-----ccCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHh
Confidence 999999874 34588888432 2223333222211 57999999986 33 7
Q ss_pred CCCCEEEEcCcCCCCCHHH--HH-H----HHHhcCCcEEEEc-------eeCCEEEEEeCCe
Q 024032 195 RSDDCALMKNDAEIDDLKS--SP-K----YVLRRVDFAMVVS-------NIAEIYKALKAGD 242 (273)
Q Consensus 195 ~~p~iLlLDEPts~LD~~~--~l-~----~l~~~~g~tiiiv-------~~ad~i~vl~~G~ 242 (273)
.+|+++||||||++||+.. .+ + .+.++ |.|||++ ..||++++|++|+
T Consensus 144 ~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~-~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 144 SDADIYLLDDPLSAVDAHVGRHIFENCILGLLLN-NKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHHHhccC-CCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 8999999999999999982 22 2 22233 7899988 2389999999985
No 284
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.7e-34 Score=256.02 Aligned_cols=168 Identities=21% Similarity=0.210 Sum_probs=140.0
Q ss_pred CceEEEEEEEEeecCCe---eeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCc
Q 024032 65 GLNELRHKFLSYRSGDF---WIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSH 140 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~---~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~ 140 (273)
.+++++|+++.|..+.. ...+.|+++|||+|++||++||||+||||||||-|+|.||++ ++|+|+++|+++....
T Consensus 3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~- 81 (268)
T COG4608 3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS- 81 (268)
T ss_pred ceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc-
Confidence 36899999999976431 101256999999999999999999999999999999999999 9999999999875433
Q ss_pred cEEEEeccchhhhccCCcccccccccCCHHHHHHHHHHhc----------ccCCHHHHHHH---Hh-cCCCCEEEEcCcC
Q 024032 141 TITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELS----------SWMSEGVHHNQ---RC-LRSDDCALMKNDA 206 (273)
Q Consensus 141 ~i~~v~q~~~~~~~~~~~~tv~en~~~~~~~~~~~l~~~~----------~~LSgGqkq~~---r~-l~~p~iLlLDEPt 206 (273)
.....+++.+.++.++ .+|||||+||. |+ +.+|+++++|||+
T Consensus 82 ------------------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpv 137 (268)
T COG4608 82 ------------------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPV 137 (268)
T ss_pred ------------------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCch
Confidence 0112344666666665 89999999986 55 7899999999999
Q ss_pred CCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChh
Q 024032 207 EIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPG 257 (273)
Q Consensus 207 s~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~ 257 (273)
|+||.. ++++++.++.|.|.++| .++|||+||..|+|++.|+.++++.+|.
T Consensus 138 SaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p~ 202 (268)
T COG4608 138 SALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNPL 202 (268)
T ss_pred hhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCCC
Confidence 999996 55778888889999999 5689999999999999999999997653
No 285
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=3e-34 Score=252.45 Aligned_cols=168 Identities=15% Similarity=0.158 Sum_probs=135.4
Q ss_pred eEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEEEEeccchhhhccCCccccccccc-----
Q 024032 93 MDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRG----- 166 (273)
Q Consensus 93 ~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en~~----- 166 (273)
|+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++...++.++|++|++..+. .+..|+.+|..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~--~~~~tv~~~l~~~~~~ 78 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAW--DFPISVAHTVMSGRTG 78 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccC--CCCccHHHHHHhcccc
Confidence 5789999999999999999999999999999 999999999987655677999999876421 23456766521
Q ss_pred ------C----CHHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHH
Q 024032 167 ------F----NYNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKY 217 (273)
Q Consensus 167 ------~----~~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~ 217 (273)
. ..+++.++++.++ ..||+|||||. |+ +.+|++|||||||++||+. +.+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~ 158 (223)
T TIGR03771 79 HIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIE 158 (223)
T ss_pred ccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 0 1234566677665 67999999986 33 7999999999999999999 33555
Q ss_pred HHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChhhHHHhCC
Q 024032 218 VLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPGLRKCSKI 264 (273)
Q Consensus 218 l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~l~~~~~~ 264 (273)
+.++ |.|+|++ +.||+++++ +|+++..|+++++.++..+.+.|+.
T Consensus 159 ~~~~-~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~~~~~~~~~~~ 211 (223)
T TIGR03771 159 LAGA-GTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQDPAPWMTTFGV 211 (223)
T ss_pred HHHc-CCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcChHHHHHHhCC
Confidence 5544 8899998 568999999 7999999999999887777777764
No 286
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=3.4e-34 Score=251.80 Aligned_cols=169 Identities=19% Similarity=0.282 Sum_probs=132.4
Q ss_pred CCceEEEEEEEEeecCC-eeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC----
Q 024032 64 DGLNELRHKFLSYRSGD-FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---- 137 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~-~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---- 137 (273)
.+.+++++++++|+..+ .++ |+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~----l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~ 84 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLV----LQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHK 84 (226)
T ss_pred CceEEEEEEEEEeCCCCCCcc----ccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHH
Confidence 46799999999996432 346 999999999999999999999999999999999999 99999999987642
Q ss_pred -CCccEEEEeccchhhhccCCcccccccccC-----CHHH---------HHHHHHHh--c---------ccCCHHHHHHH
Q 024032 138 -SSHTITMYMEEHNVMRSLQSGFCVYDSRGF-----NYNR---------VHEGLEEL--S---------SWMSEGVHHNQ 191 (273)
Q Consensus 138 -~~~~i~~v~q~~~~~~~~~~~~tv~en~~~-----~~~~---------~~~~l~~~--~---------~~LSgGqkq~~ 191 (273)
.++.+++++|++.++ ..|+++|..+ .... +.+.++.+ + .+|||||+||.
T Consensus 85 ~~~~~i~~~~q~~~l~-----~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv 159 (226)
T cd03248 85 YLHSKVSLVGQEPVLF-----ARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRV 159 (226)
T ss_pred HHHhhEEEEecccHHH-----hhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHH
Confidence 346799999998653 2488887431 1111 12334444 2 67999999986
Q ss_pred ---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeE
Q 024032 192 ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKAGDS 243 (273)
Q Consensus 192 ---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i 243 (273)
|+ +.+|++|||||||++||+. +.++++.+ +.|+|++ ..||++++|++|++
T Consensus 160 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 160 AIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE--RRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC--CCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 33 7999999999999999999 33444443 5788888 34899999999874
No 287
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.9e-35 Score=270.86 Aligned_cols=184 Identities=17% Similarity=0.187 Sum_probs=153.2
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN----- 137 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~----- 137 (273)
.+.+.|.+|+|.|.. .+++ |+++||++++|+.+|++||||+||||++++|.++|+ .+|.|.+||+++++
T Consensus 260 ~g~v~F~~V~F~y~~-~r~i----L~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~s 334 (497)
T COG5265 260 LGAVAFINVSFAYDP-RRPI----LNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQS 334 (497)
T ss_pred cceEEEEEEEeeccc-cchh----hcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHH
Confidence 456899999999964 5667 999999999999999999999999999999999999 99999999999974
Q ss_pred CCccEEEEeccchhhhccCCccccccc-----ccCCHHHHHHHHHHhc--------------------ccCCHHHHHHH-
Q 024032 138 SSHTITMYMEEHNVMRSLQSGFCVYDS-----RGFNYNRVHEGLEELS--------------------SWMSEGVHHNQ- 191 (273)
Q Consensus 138 ~~~~i~~v~q~~~~~~~~~~~~tv~en-----~~~~~~~~~~~l~~~~--------------------~~LSgGqkq~~- 191 (273)
+|+.||.|+|+..+|. .|++.| +....+++..+++.+. ..||||||||.
T Consensus 335 lR~aIg~VPQDtvLFN-----Dti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrva 409 (497)
T COG5265 335 LRRAIGIVPQDTVLFN-----DTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVA 409 (497)
T ss_pred HHHHhCcCcccceehh-----hhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHH
Confidence 6788999999998654 467666 3345666666666544 56999999987
Q ss_pred --Hh-cCCCCEEEEcCcCCCCCHH--H----HHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccC
Q 024032 192 --RC-LRSDDCALMKNDAEIDDLK--S----SPKYVLRRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSA 255 (273)
Q Consensus 192 --r~-l~~p~iLlLDEPts~LD~~--~----~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~ 255 (273)
|. +++|+||+|||.||+||.. + .++++.+ |+|.++| -.||.|+||++|+|++.|+|++++..
T Consensus 410 iar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~--~rttlviahrlsti~~adeiivl~~g~i~erg~h~~ll~~ 487 (497)
T COG5265 410 IARTILKNPPILILDEATSALDTHTEQAIQAALREVSA--GRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAA 487 (497)
T ss_pred HHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhC--CCeEEEEeehhhhccCCceEEEeeCCEEEecCcHHHHHHc
Confidence 33 8999999999999999998 2 2444544 7776666 45899999999999999999999876
Q ss_pred hhhH
Q 024032 256 PGLR 259 (273)
Q Consensus 256 ~~l~ 259 (273)
..++
T Consensus 488 ~g~y 491 (497)
T COG5265 488 GGLY 491 (497)
T ss_pred CChH
Confidence 5544
No 288
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=4e-34 Score=270.72 Aligned_cols=173 Identities=14% Similarity=0.155 Sum_probs=144.7
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC------
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------ 137 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------ 137 (273)
..++++++++.|+ +..+ +++|||+|++||+.||+|.||||||||+++|.|+|+ ++|+|+++|+.+.-
T Consensus 3 ~~l~~~~itK~f~--~~~A----nd~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA 76 (501)
T COG3845 3 PALEMRGITKRFP--GVVA----NDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDA 76 (501)
T ss_pred ceEEEeccEEEcC--CEEe----cCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHH
Confidence 4689999999995 4444 999999999999999999999999999999999999 99999999998752
Q ss_pred CCccEEEEeccchhhhccCCccccccccc----------CCHH----HHHHHHHHhc---------ccCCHHHHHHH---
Q 024032 138 SSHTITMYMEEHNVMRSLQSGFCVYDSRG----------FNYN----RVHEGLEELS---------SWMSEGVHHNQ--- 191 (273)
Q Consensus 138 ~~~~i~~v~q~~~~~~~~~~~~tv~en~~----------~~~~----~~~~~l~~~~---------~~LSgGqkq~~--- 191 (273)
.+.-||+|+|++.+++. +||.||.- .+.. ++.+..++++ ..||-|+|||.
T Consensus 77 ~~~GIGMVhQHF~Lv~~----lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIl 152 (501)
T COG3845 77 IRLGIGMVHQHFMLVPT----LTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEIL 152 (501)
T ss_pred HHcCCcEEeeccccccc----cchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHH
Confidence 45679999999998554 59999931 1333 3444555555 78999999987
Q ss_pred Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecC
Q 024032 192 RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDA 248 (273)
Q Consensus 192 r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~ 248 (273)
++ +++|++|||||||+-|-|. +.++.+.++ |+|||+| .+|||+.||++|+++...+
T Consensus 153 KaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~-G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 153 KALYRGARLLILDEPTAVLTPQEADELFEILRRLAAE-GKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeec
Confidence 33 7999999999999999999 346677766 9999999 6799999999999986655
No 289
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=4.8e-34 Score=240.59 Aligned_cols=150 Identities=15% Similarity=0.187 Sum_probs=122.7
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEEEE
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~~v 145 (273)
+++++++++|+. ++++ |+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|. +.++|+
T Consensus 1 i~~~~~~~~~~~-~~~~----l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~------~~i~~~ 69 (166)
T cd03223 1 IELENLSLATPD-GRVL----LKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG------EDLLFL 69 (166)
T ss_pred CEEEEEEEEcCC-CCee----eecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC------ceEEEE
Confidence 468999999853 2456 999999999999999999999999999999999999 9999999874 578999
Q ss_pred eccchhhhccCCcccccccccCCHHHHHHHHHHhcccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH--HHHHHHH
Q 024032 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK--SSPKYVL 219 (273)
Q Consensus 146 ~q~~~~~~~~~~~~tv~en~~~~~~~~~~~l~~~~~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~--~~l~~l~ 219 (273)
+|++.+ +..|+.||..+. ...+||||||||. |+ +++|+++||||||++||+. ..+.++.
T Consensus 70 ~q~~~~-----~~~tv~~nl~~~----------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l 134 (166)
T cd03223 70 PQRPYL-----PLGTLREQLIYP----------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLL 134 (166)
T ss_pred CCCCcc-----ccccHHHHhhcc----------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHH
Confidence 998763 345888885432 2478999999986 33 7999999999999999999 3333333
Q ss_pred hcCCcEEEEc-------eeCCEEEEEeCCe
Q 024032 220 RRVDFAMVVS-------NIAEIYKALKAGD 242 (273)
Q Consensus 220 ~~~g~tiiiv-------~~ad~i~vl~~G~ 242 (273)
++.+.|+|++ ..||++++|++|.
T Consensus 135 ~~~~~tiiivsh~~~~~~~~d~i~~l~~~~ 164 (166)
T cd03223 135 KELGITVISVGHRPSLWKFHDRVLDLDGEG 164 (166)
T ss_pred HHhCCEEEEEeCChhHHhhCCEEEEEcCCC
Confidence 3347898888 4689999998764
No 290
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=5.2e-34 Score=251.16 Aligned_cols=163 Identities=17% Similarity=0.214 Sum_probs=123.7
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEEEE
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~~v 145 (273)
+.++++++.| +++++ |+++||+|++|++++|+||||||||||+++|+|+++ ++|+|+++|+++.......
T Consensus 23 l~~~~~~~~~--~~~~i----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~--- 93 (224)
T cd03220 23 LGILGRKGEV--GEFWA----LKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGG--- 93 (224)
T ss_pred hhhhhhhhhc--CCeEE----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccc---
Confidence 5566676655 45667 999999999999999999999999999999999999 9999999998753211111
Q ss_pred eccchhhhccCCccccccccc-------CCH----HHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCCEEE
Q 024032 146 MEEHNVMRSLQSGFCVYDSRG-------FNY----NRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDDCAL 201 (273)
Q Consensus 146 ~q~~~~~~~~~~~~tv~en~~-------~~~----~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~iLl 201 (273)
. +.+..|+.||.. ... +.+.++++.++ ..||||||||. |+ +++|++||
T Consensus 94 ----~----~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lll 165 (224)
T cd03220 94 ----G----FNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILL 165 (224)
T ss_pred ----c----CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 1 123346766621 121 22344454443 78999999986 33 78999999
Q ss_pred EcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeec
Q 024032 202 MKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLD 247 (273)
Q Consensus 202 LDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g 247 (273)
|||||++||+. +.++++.++ |.|||++ .+||++++|++|++++.|
T Consensus 166 lDEP~~gLD~~~~~~~~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 166 IDEVLAVGDAAFQEKCQRRLRELLKQ-GKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999998 345556555 7899888 468999999999998754
No 291
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-34 Score=279.85 Aligned_cols=176 Identities=10% Similarity=0.131 Sum_probs=139.5
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC------
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------ 137 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------ 137 (273)
..++++|+++.| + .+ |+++||+|++|++++|+||||||||||+|+|+|+++ ++|+|.++|+++..
T Consensus 264 ~~l~~~~l~~~~--~--~~----l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~ 335 (510)
T PRK09700 264 TVFEVRNVTSRD--R--KK----VRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDA 335 (510)
T ss_pred cEEEEeCccccC--C--Cc----ccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHH
Confidence 369999999865 2 25 999999999999999999999999999999999999 99999999988743
Q ss_pred CCccEEEEeccc---hhhhccCCcccccccccC----------------C----HHHHHHHHHHhc----------ccCC
Q 024032 138 SSHTITMYMEEH---NVMRSLQSGFCVYDSRGF----------------N----YNRVHEGLEELS----------SWMS 184 (273)
Q Consensus 138 ~~~~i~~v~q~~---~~~~~~~~~~tv~en~~~----------------~----~~~~~~~l~~~~----------~~LS 184 (273)
.++.++|++|++ .+ +..+|+++|..+ . .+.+.++++.++ .+||
T Consensus 336 ~~~~i~~v~q~~~~~~~----~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS 411 (510)
T PRK09700 336 VKKGMAYITESRRDNGF----FPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELS 411 (510)
T ss_pred HHCCcEEccCccccCCC----cCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCC
Confidence 235689999974 33 334577776321 1 123455666654 5799
Q ss_pred HHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeee
Q 024032 185 EGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPL 246 (273)
Q Consensus 185 gGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~ 246 (273)
||||||. |+ +.+|++|||||||++||+. +.+++++++ |.|||++ .+||++++|++|+++..
T Consensus 412 gGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~ 490 (510)
T PRK09700 412 GGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADD-GKVILMVSSELPEIITVCDRIAVFCEGRLTQI 490 (510)
T ss_pred hHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEcCCHHHHHhhCCEEEEEECCEEEEE
Confidence 9999987 33 7899999999999999999 345566554 8999998 56899999999999988
Q ss_pred cChhhhc
Q 024032 247 DATKRLF 253 (273)
Q Consensus 247 g~~~~l~ 253 (273)
++..+.+
T Consensus 491 ~~~~~~~ 497 (510)
T PRK09700 491 LTNRDDM 497 (510)
T ss_pred ecCcccC
Confidence 7664433
No 292
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.2e-34 Score=278.53 Aligned_cols=172 Identities=15% Similarity=0.153 Sum_probs=135.3
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEEE
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~~ 144 (273)
+++++|++++|+ ++++ |+++||+|++|++++|+||||||||||+|+|+|+++ ++|+|.++|. ..+++
T Consensus 1 ml~i~~ls~~~~--~~~i----l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------~~i~~ 68 (530)
T PRK15064 1 MLSTANITMQFG--AKPL----FENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN------ERLGK 68 (530)
T ss_pred CEEEEEEEEEeC--CcEe----EeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC------CEEEE
Confidence 378999999984 4567 999999999999999999999999999999999998 9999999873 35899
Q ss_pred EeccchhhhccCCcccccccccCC-------------------------------------------HHHHHHHHHHhc-
Q 024032 145 YMEEHNVMRSLQSGFCVYDSRGFN-------------------------------------------YNRVHEGLEELS- 180 (273)
Q Consensus 145 v~q~~~~~~~~~~~~tv~en~~~~-------------------------------------------~~~~~~~l~~~~- 180 (273)
++|++.. +..+|++||..+. ..++.++++.++
T Consensus 69 ~~q~~~~----~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl 144 (530)
T PRK15064 69 LRQDQFA----FEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGI 144 (530)
T ss_pred EeccCCc----CCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCC
Confidence 9998764 3344666652210 123444555443
Q ss_pred ---------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH--HHHHHHHhcCCcEEEEc--------eeCCEEEE
Q 024032 181 ---------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK--SSPKYVLRRVDFAMVVS--------NIAEIYKA 237 (273)
Q Consensus 181 ---------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~--~~l~~l~~~~g~tiiiv--------~~ad~i~v 237 (273)
.+||||||||. ++ +.+|++|||||||++||+. ..+.++.++.|.|||+| .+||++++
T Consensus 145 ~~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~d~i~~ 224 (530)
T PRK15064 145 PEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMAD 224 (530)
T ss_pred ChhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEE
Confidence 56999999987 33 7899999999999999999 33333333448899988 56899999
Q ss_pred EeCCeEe-eecChhhhc
Q 024032 238 LKAGDSK-PLDATKRLF 253 (273)
Q Consensus 238 l~~G~i~-~~g~~~~l~ 253 (273)
|++|+++ ..|++++++
T Consensus 225 l~~g~i~~~~g~~~~~~ 241 (530)
T PRK15064 225 LDYGELRVYPGNYDEYM 241 (530)
T ss_pred EeCCEEEEecCCHHHHH
Confidence 9999994 788887665
No 293
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=1.5e-33 Score=243.28 Aligned_cols=154 Identities=14% Similarity=0.174 Sum_probs=123.1
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC----CCcc
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN----SSHT 141 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~----~~~~ 141 (273)
++++|++++|. ++++ |+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|.++.. .++.
T Consensus 1 l~~~~l~~~~~--~~~~----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (198)
T TIGR01189 1 LAARNLACSRG--ERML----FEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRN 74 (198)
T ss_pred CEEEEEEEEEC--CEEE----EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhh
Confidence 47899999884 4567 999999999999999999999999999999999999 99999999998753 3467
Q ss_pred EEEEeccchhhhccCCcccccccccC-------CHHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCCEEE
Q 024032 142 ITMYMEEHNVMRSLQSGFCVYDSRGF-------NYNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDDCAL 201 (273)
Q Consensus 142 i~~v~q~~~~~~~~~~~~tv~en~~~-------~~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~iLl 201 (273)
++|++|+..+ +..+|+.+|..+ ..+.+.++++.++ .+|||||+||. |+ +.+|+++|
T Consensus 75 i~~~~q~~~~----~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll 150 (198)
T TIGR01189 75 ILYLGHLPGL----KPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWI 150 (198)
T ss_pred eEEeccCccc----ccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEE
Confidence 8999987664 334588887321 1234566666655 67999999986 33 78999999
Q ss_pred EcCcCCCCCHH------HHHHHHHhcCCcEEEEcee
Q 024032 202 MKNDAEIDDLK------SSPKYVLRRVDFAMVVSNI 231 (273)
Q Consensus 202 LDEPts~LD~~------~~l~~l~~~~g~tiiiv~~ 231 (273)
|||||++||+. +.++++.++ |.|+|++.|
T Consensus 151 lDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~~sH 185 (198)
T TIGR01189 151 LDEPTTALDKAGVALLAGLLRAHLAR-GGIVLLTTH 185 (198)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEEEc
Confidence 99999999999 334555444 889988844
No 294
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=7.1e-34 Score=297.39 Aligned_cols=217 Identities=17% Similarity=0.199 Sum_probs=182.3
Q ss_pred hhhhhccchhhhhhhhHHHHHHHhchhh---hc-----c---CCCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCc
Q 024032 31 ECVKLKLDLPNVSTLTPRLRVLREMERL---AL-----I---APDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVI 99 (273)
Q Consensus 31 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~---~~-----~---~~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge 99 (273)
-+..+.+++.....+.+|+.+..+++++ .. + +..+.|+++|++.+|+.+...| |++|||+|++||
T Consensus 1092 ~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~lp~V----Lk~is~~I~p~e 1167 (1381)
T KOG0054|consen 1092 WLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPNLPLV----LKGISFTIKPGE 1167 (1381)
T ss_pred HHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCCCcch----hcCceEEEcCCc
Confidence 3445557777888999999999886543 11 1 1246899999999999876677 999999999999
Q ss_pred EEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCcccccccc----cCCH
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSR----GFNY 169 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~----~~~~ 169 (273)
.+||||..|||||||+++|.++.. .+|+|.|||.|+.+ +|++++.+||+|.+ |..|++.|. ..++
T Consensus 1168 KVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvL-----FsGTvR~NLDPf~e~sD 1242 (1381)
T KOG0054|consen 1168 KVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVL-----FSGTVRFNLDPFDEYSD 1242 (1381)
T ss_pred eEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCce-----ecCccccccCcccccCH
Confidence 999999999999999999999999 99999999999974 78999999999994 566999994 3578
Q ss_pred HHHHHHHHHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH--HHHHH-HHhc-
Q 024032 170 NRVHEGLEELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK--SSPKY-VLRR- 221 (273)
Q Consensus 170 ~~~~~~l~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~--~~l~~-l~~~- 221 (273)
++++++|+.+. .++|-||||.. || +++++||+|||+|+++|+. .++++ ++++
T Consensus 1243 ~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F 1322 (1381)
T KOG0054|consen 1243 DEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEF 1322 (1381)
T ss_pred HHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHh
Confidence 89999999876 67999999965 55 8999999999999999999 34433 2222
Q ss_pred CCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 222 VDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 222 ~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
.++|||.| -.+|||+||++|+|++.|+|+++++++
T Consensus 1323 ~dcTVltIAHRl~TVmd~DrVlVld~G~v~EfdsP~~Ll~~~ 1364 (1381)
T KOG0054|consen 1323 KDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPAELLSDK 1364 (1381)
T ss_pred cCCeEEEEeeccchhhhcCeEEEeeCCeEeecCChHHHHhCC
Confidence 17999999 337999999999999999999999764
No 295
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.7e-33 Score=244.81 Aligned_cols=153 Identities=12% Similarity=0.147 Sum_probs=124.3
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC--CCccE
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN--SSHTI 142 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~--~~~~i 142 (273)
+++++|+++.|. ++.+ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++.. .++.+
T Consensus 2 ~l~~~~l~~~~~--~~~~----l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 75 (207)
T PRK13539 2 MLEGEDLACVRG--GRVL----FSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEAC 75 (207)
T ss_pred EEEEEeEEEEEC--CeEE----EeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhc
Confidence 478999999984 4556 999999999999999999999999999999999999 99999999987642 45678
Q ss_pred EEEeccchhhhccCCccccccccc-------CCHHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCCEEEE
Q 024032 143 TMYMEEHNVMRSLQSGFCVYDSRG-------FNYNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDDCALM 202 (273)
Q Consensus 143 ~~v~q~~~~~~~~~~~~tv~en~~-------~~~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~iLlL 202 (273)
++++|+... ++..|+.+|.. ...+.+.++++.++ .+|||||+||. |+ +.+|++|||
T Consensus 76 ~~~~~~~~~----~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llll 151 (207)
T PRK13539 76 HYLGHRNAM----KPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWIL 151 (207)
T ss_pred EEecCCCcC----CCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 888887664 34568888732 22344666777765 67999999986 33 789999999
Q ss_pred cCcCCCCCHH------HHHHHHHhcCCcEEEEc
Q 024032 203 KNDAEIDDLK------SSPKYVLRRVDFAMVVS 229 (273)
Q Consensus 203 DEPts~LD~~------~~l~~l~~~~g~tiiiv 229 (273)
||||++||+. +.++++.++ |.|||++
T Consensus 152 DEPt~~LD~~~~~~l~~~l~~~~~~-~~tiii~ 183 (207)
T PRK13539 152 DEPTAALDAAAVALFAELIRAHLAQ-GGIVIAA 183 (207)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEE
Confidence 9999999999 334555544 8999998
No 296
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=5.8e-34 Score=264.04 Aligned_cols=192 Identities=16% Similarity=0.170 Sum_probs=159.9
Q ss_pred CCceEEEEEEEEeecCCe-----eeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeCCC-
Q 024032 64 DGLNELRHKFLSYRSGDF-----WIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGN- 137 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~-----~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i~~- 137 (273)
...++.+++...|+-.+- .-...|++++||++++||.+||||.||||||||-.+|.++++.+|+|.|+|+++..
T Consensus 274 ~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~~~ 353 (534)
T COG4172 274 PVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGL 353 (534)
T ss_pred CceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcCceEEECCcccccc
Confidence 347899999999975421 11235799999999999999999999999999999999999977999999999863
Q ss_pred -------CCccEEEEeccchhhhccCCcccccccc---------cC----CHHHHHHHHHHhc----------ccCCHHH
Q 024032 138 -------SSHTITMYMEEHNVMRSLQSGFCVYDSR---------GF----NYNRVHEGLEELS----------SWMSEGV 187 (273)
Q Consensus 138 -------~~~~i~~v~q~~~~~~~~~~~~tv~en~---------~~----~~~~~~~~l~~~~----------~~LSgGq 187 (273)
+|+++-.|||+|.-- +.+.+||.+.. .. ..+++.++++.++ .++||||
T Consensus 354 ~~~~mrplR~~mQvVFQDPygS--LsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQ 431 (534)
T COG4172 354 SRKEMRPLRRRMQVVFQDPYGS--LSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQ 431 (534)
T ss_pred ChhhhhhhhhhceEEEeCCCCC--CCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcch
Confidence 567889999998632 34556776641 12 2456778888887 8899999
Q ss_pred HHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecCh
Q 024032 188 HHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDAT 249 (273)
Q Consensus 188 kq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~ 249 (273)
|||. |+ +.+|++++||||||+||.. ++++.+.+++|.+-++| .+||+|+||++|+||++|+.
T Consensus 432 RQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G~~ 511 (534)
T COG4172 432 RQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPT 511 (534)
T ss_pred hhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeeeCCH
Confidence 9987 44 7899999999999999988 56788888889999888 56899999999999999999
Q ss_pred hhhccChh
Q 024032 250 KRLFSAPG 257 (273)
Q Consensus 250 ~~l~~~~~ 257 (273)
+++|++|.
T Consensus 512 ~~if~~P~ 519 (534)
T COG4172 512 EAVFANPQ 519 (534)
T ss_pred HHHhcCCC
Confidence 99998774
No 297
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.1e-33 Score=244.65 Aligned_cols=154 Identities=16% Similarity=0.189 Sum_probs=124.1
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC----CCcc
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN----SSHT 141 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~----~~~~ 141 (273)
++++|++++|. ++++ |+++||++++||+++|+||||||||||+++|+|+++ ++|+|+++|+++.. .++.
T Consensus 2 l~~~~l~~~~~--~~~i----l~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~ 75 (200)
T PRK13540 2 LDVIELDFDYH--DQPL----LQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQ 75 (200)
T ss_pred EEEEEEEEEeC--CeeE----EeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhh
Confidence 78999999984 4567 999999999999999999999999999999999999 99999999988753 3567
Q ss_pred EEEEeccchhhhccCCcccccccccC------CHHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCCEEEE
Q 024032 142 ITMYMEEHNVMRSLQSGFCVYDSRGF------NYNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDDCALM 202 (273)
Q Consensus 142 i~~v~q~~~~~~~~~~~~tv~en~~~------~~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~iLlL 202 (273)
+++++|++.+ ++..|+.+|..+ ....+.+.++.++ ..||+||+||. |+ +++|++|||
T Consensus 76 i~~~~q~~~~----~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lil 151 (200)
T PRK13540 76 LCFVGHRSGI----NPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLL 151 (200)
T ss_pred eEEecccccc----CcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 8999998764 345688887432 1234556666554 57999999986 33 799999999
Q ss_pred cCcCCCCCHH------HHHHHHHhcCCcEEEEcee
Q 024032 203 KNDAEIDDLK------SSPKYVLRRVDFAMVVSNI 231 (273)
Q Consensus 203 DEPts~LD~~------~~l~~l~~~~g~tiiiv~~ 231 (273)
||||++||+. +.++++.++ |.|||++.|
T Consensus 152 DEP~~~LD~~~~~~l~~~l~~~~~~-~~tiii~sh 185 (200)
T PRK13540 152 DEPLVALDELSLLTIITKIQEHRAK-GGAVLLTSH 185 (200)
T ss_pred eCCCcccCHHHHHHHHHHHHHHHHc-CCEEEEEeC
Confidence 9999999999 335555444 889988843
No 298
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.2e-33 Score=304.57 Aligned_cols=211 Identities=15% Similarity=0.130 Sum_probs=167.3
Q ss_pred hhhhhhhccchhhhhhhhHHHHHHHhchhhhc------cCCCCceEEEEEEEEeecC-CeeeeccceeeeeeEEcCCcEE
Q 024032 29 FDECVKLKLDLPNVSTLTPRLRVLREMERLAL------IAPDGLNELRHKFLSYRSG-DFWIPIGGIQKGGMDIPPVITI 101 (273)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~------~~~~~~i~~~~v~~~y~~g-~~~v~~~~L~~is~~i~~Ge~~ 101 (273)
+..++.....+.++..+.+|+.++++.++... ......++++|++|+|+.. ++++ |+|+||+|++|+.+
T Consensus 571 l~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~~~~~~~~~~I~~~~vsF~y~~~~~~~v----L~~inl~i~~Ge~v 646 (1495)
T PLN03232 571 LNMLPNLLSQVVNANVSLQRIEELLLSEERILAQNPPLQPGAPAISIKNGYFSWDSKTSKPT----LSDINLEIPVGSLV 646 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccCCcCCCCCcEEEEeeEEEcCCCCCCce----eeeeEEEEcCCCEE
Confidence 34566666778899999999999987654211 0112369999999999753 3456 99999999999999
Q ss_pred EEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEEEEeccchhhhccCCccccccccc----CCHHHHHHHH
Q 024032 102 LLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRG----FNYNRVHEGL 176 (273)
Q Consensus 102 aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en~~----~~~~~~~~~l 176 (273)
+|+||||||||||+++|+|+++ .+|.+. ..+..++|++|++.+ ++.||+||.. ++.+++++++
T Consensus 647 aIvG~sGSGKSTLl~lLlG~~~~~~G~i~-------~~~~~Iayv~Q~p~L-----f~gTIreNI~fg~~~~~e~~~~vl 714 (1495)
T PLN03232 647 AIVGGTGEGKTSLISAMLGELSHAETSSV-------VIRGSVAYVPQVSWI-----FNATVRENILFGSDFESERYWRAI 714 (1495)
T ss_pred EEECCCCCcHHHHHHHHhCCCcccCCCEE-------EecCcEEEEcCcccc-----ccccHHHHhhcCCccCHHHHHHHH
Confidence 9999999999999999999999 888763 245689999999985 4569999943 4667777777
Q ss_pred HHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH---HHHHHHHh--cCCcEEE
Q 024032 177 EELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK---SSPKYVLR--RVDFAMV 227 (273)
Q Consensus 177 ~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~---~~l~~l~~--~~g~tii 227 (273)
+.++ ..||||||||. |+ +++|+|+|||||||+||+. +.++.+.+ ..++|+|
T Consensus 715 ~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~I 794 (1495)
T PLN03232 715 DVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRV 794 (1495)
T ss_pred HHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEE
Confidence 7654 46999999987 55 8999999999999999998 22333211 1278988
Q ss_pred Ec-------eeCCEEEEEeCCeEeeecChhhhccC
Q 024032 228 VS-------NIAEIYKALKAGDSKPLDATKRLFSA 255 (273)
Q Consensus 228 iv-------~~ad~i~vl~~G~i~~~g~~~~l~~~ 255 (273)
+| ..||+|++|++|++++.|+++++++.
T Consensus 795 lvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~~ 829 (1495)
T PLN03232 795 LVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKS 829 (1495)
T ss_pred EEECChhhHHhCCEEEEEeCCEEEEecCHHHHHhc
Confidence 88 45899999999999999999998753
No 299
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-33 Score=252.63 Aligned_cols=176 Identities=14% Similarity=0.121 Sum_probs=131.8
Q ss_pred ceEEEEEEEEeecCC--------------eeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEE
Q 024032 66 LNELRHKFLSYRSGD--------------FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLF 130 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~--------------~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i 130 (273)
.++++|+++.|+... ..-...+|+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~ 83 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 477888888886521 0001124999999999999999999999999999999999999 9999999
Q ss_pred CCeeCCCCCccEEEEeccchhhhccCCcccccccc-------cCCHHHH----HHHHHHhc---------ccCCHHHHHH
Q 024032 131 AQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSR-------GFNYNRV----HEGLEELS---------SWMSEGVHHN 190 (273)
Q Consensus 131 ~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en~-------~~~~~~~----~~~l~~~~---------~~LSgGqkq~ 190 (273)
+|. ++++.|+... ...+|+.+|. +...+.. .++++.++ ..||+||+||
T Consensus 84 ~g~--------~~~~~~~~~~----~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qr 151 (264)
T PRK13546 84 NGE--------VSVIAISAGL----SGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAK 151 (264)
T ss_pred CCE--------EeEEecccCC----CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHH
Confidence 985 2344444332 2334677663 2222222 23344332 6799999998
Q ss_pred H---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhh
Q 024032 191 Q---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRL 252 (273)
Q Consensus 191 ~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l 252 (273)
. ++ +.+|++|||||||++||+. +.+.++.++ |.|||++ .+||++++|++|+++..|+++++
T Consensus 152 v~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~-g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~ 230 (264)
T PRK13546 152 LGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQ-NKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDV 230 (264)
T ss_pred HHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCCHHHH
Confidence 6 33 7899999999999999998 334555444 8899888 46899999999999999999887
Q ss_pred cc
Q 024032 253 FS 254 (273)
Q Consensus 253 ~~ 254 (273)
+.
T Consensus 231 ~~ 232 (264)
T PRK13546 231 LP 232 (264)
T ss_pred HH
Confidence 64
No 300
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=1.8e-33 Score=305.06 Aligned_cols=181 Identities=13% Similarity=0.124 Sum_probs=150.0
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC----C
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN----S 138 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~----~ 138 (273)
...++++|++++|..+++.+ |+++||+|++||++||+||||||||||+|+|+|+++ ++|+|+++|+++.. .
T Consensus 1935 ~~~L~v~nLsK~Y~~~~~~a----L~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~ 2010 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGTSSPA----VDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDV 2010 (2272)
T ss_pred CceEEEEEEEEEECCCCceE----EEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHH
Confidence 45799999999996433556 999999999999999999999999999999999999 99999999998852 4
Q ss_pred CccEEEEeccchhhhccCCcccccccc-------cCCHH----HHHHHHHHhc---------ccCCHHHHHHH---Hh-c
Q 024032 139 SHTITMYMEEHNVMRSLQSGFCVYDSR-------GFNYN----RVHEGLEELS---------SWMSEGVHHNQ---RC-L 194 (273)
Q Consensus 139 ~~~i~~v~q~~~~~~~~~~~~tv~en~-------~~~~~----~~~~~l~~~~---------~~LSgGqkq~~---r~-l 194 (273)
++.+||++|+..+ +..+|++|+. +...+ .+.+.++.++ .+||||||||. ++ +
T Consensus 2011 r~~IGy~pQ~~~L----~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi 2086 (2272)
T TIGR01257 2011 HQNMGYCPQFDAI----DDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALI 2086 (2272)
T ss_pred hhhEEEEeccccC----CCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHh
Confidence 5679999998875 3446898873 22222 3345566555 78999999987 33 7
Q ss_pred CCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhc
Q 024032 195 RSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLF 253 (273)
Q Consensus 195 ~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~ 253 (273)
.+|++|||||||+||||. +.++++.++ |+|||++ .+|||+++|++|+++..|+++++.
T Consensus 2087 ~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~-g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk 2158 (2272)
T TIGR01257 2087 GCPPLVLLDEPTTGMDPQARRMLWNTIVSIIRE-GRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLK 2158 (2272)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 899999999999999999 345666555 8999999 568999999999999999999874
No 301
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=9.1e-34 Score=276.49 Aligned_cols=177 Identities=11% Similarity=0.140 Sum_probs=140.1
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC------
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------ 137 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------ 137 (273)
..++++|+++ .+ |+++||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++..
T Consensus 256 ~~l~~~~l~~-------~~----l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~ 324 (501)
T PRK10762 256 VRLKVDNLSG-------PG----VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDG 324 (501)
T ss_pred cEEEEeCccc-------CC----cccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHH
Confidence 3688898874 23 999999999999999999999999999999999999 99999999998753
Q ss_pred CCccEEEEeccchhhhccCCcccccccccC-------------C----HHHHHHHHHHhc----------ccCCHHHHHH
Q 024032 138 SSHTITMYMEEHNVMRSLQSGFCVYDSRGF-------------N----YNRVHEGLEELS----------SWMSEGVHHN 190 (273)
Q Consensus 138 ~~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------------~----~~~~~~~l~~~~----------~~LSgGqkq~ 190 (273)
.++.++|++|++... .++..+|+.+|..+ . .+.+.++++.++ ..||||||||
T Consensus 325 ~~~~i~~v~q~~~~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqr 403 (501)
T PRK10762 325 LANGIVYISEDRKRD-GLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQK 403 (501)
T ss_pred HHCCCEEecCccccC-CCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHH
Confidence 235699999986310 01344577776321 1 123455666654 5799999998
Q ss_pred H---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhh
Q 024032 191 Q---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRL 252 (273)
Q Consensus 191 ~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l 252 (273)
. |+ +.+|++|||||||+|||+. +.++++.++ |.|||++ .+||++++|++|+++..++++++
T Consensus 404 v~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 404 VAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAE-GLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQA 482 (501)
T ss_pred HHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHC-CCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEeccccC
Confidence 7 33 7899999999999999999 345666655 8999988 56899999999999999988876
Q ss_pred cc
Q 024032 253 FS 254 (273)
Q Consensus 253 ~~ 254 (273)
..
T Consensus 483 ~~ 484 (501)
T PRK10762 483 TQ 484 (501)
T ss_pred CH
Confidence 43
No 302
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.6e-33 Score=302.89 Aligned_cols=209 Identities=17% Similarity=0.153 Sum_probs=166.2
Q ss_pred hhhhhhccchhhhhhhhHHHHHHHhchhhhc------cCCCCceEEEEEEEEeecC-CeeeeccceeeeeeEEcCCcEEE
Q 024032 30 DECVKLKLDLPNVSTLTPRLRVLREMERLAL------IAPDGLNELRHKFLSYRSG-DFWIPIGGIQKGGMDIPPVITIL 102 (273)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~------~~~~~~i~~~~v~~~y~~g-~~~v~~~~L~~is~~i~~Ge~~a 102 (273)
..++.....+.++..+.+|+.++++.++... ......++++|++|+|+.. ++++ |+|+||+|++|+.++
T Consensus 572 ~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~~v----L~~inl~i~~Ge~va 647 (1622)
T PLN03130 572 FMLPNLITQAVNANVSLKRLEELLLAEERVLLPNPPLEPGLPAISIKNGYFSWDSKAERPT----LSNINLDVPVGSLVA 647 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCCcccCCCCceEEEeeEEEccCCCCCce----eeceeEEecCCCEEE
Confidence 3455556677889999999999987543210 1112369999999999743 3456 999999999999999
Q ss_pred EEcCCCChHHHHHHHHhhCcc-Cc-cEEEECCeeCCCCCccEEEEeccchhhhccCCccccccccc----CCHHHHHHHH
Q 024032 103 LMGFSGSGKSSLVNLMYSVLS-RS-GLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRG----FNYNRVHEGL 176 (273)
Q Consensus 103 ivGpnGsGKSTLl~ll~gl~~-~~-G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en~~----~~~~~~~~~l 176 (273)
|+||||||||||+++|+|+++ .+ |+|.+ +..++|++|++.+ ++.||+||.. ++++++++++
T Consensus 648 IvG~sGSGKSTLl~lLlG~~~~~~GG~I~l--------~~~Iayv~Q~p~L-----fngTIreNI~fg~~~d~e~y~~vl 714 (1622)
T PLN03130 648 IVGSTGEGKTSLISAMLGELPPRSDASVVI--------RGTVAYVPQVSWI-----FNATVRDNILFGSPFDPERYERAI 714 (1622)
T ss_pred EECCCCCCHHHHHHHHHHhhccCCCceEEE--------cCeEEEEcCcccc-----CCCCHHHHHhCCCcccHHHHHHHH
Confidence 999999999999999999999 89 99985 4578999999984 5569999943 4566777777
Q ss_pred HHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH---HHHHHHHh--cCCcEEE
Q 024032 177 EELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK---SSPKYVLR--RVDFAMV 227 (273)
Q Consensus 177 ~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~---~~l~~l~~--~~g~tii 227 (273)
+.++ ..||||||||. |+ +++|+|+|||||||+||+. +.+....+ ..++|+|
T Consensus 715 ~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvI 794 (1622)
T PLN03130 715 DVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRV 794 (1622)
T ss_pred HHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEE
Confidence 7654 56999999987 55 8999999999999999998 22233211 1278998
Q ss_pred Ec-------eeCCEEEEEeCCeEeeecChhhhccC
Q 024032 228 VS-------NIAEIYKALKAGDSKPLDATKRLFSA 255 (273)
Q Consensus 228 iv-------~~ad~i~vl~~G~i~~~g~~~~l~~~ 255 (273)
+| ..||+|++|++|++++.|+++++.+.
T Consensus 795 lVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~~ 829 (1622)
T PLN03130 795 LVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNN 829 (1622)
T ss_pred EEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHHhc
Confidence 88 45899999999999999999998753
No 303
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.5e-34 Score=237.13 Aligned_cols=182 Identities=20% Similarity=0.236 Sum_probs=147.9
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCC--------
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSG-------- 136 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~-------- 136 (273)
.|+++++++.|.. ..+ |.||+|+-+.||.+.++||||||||||++.+.-+.- .+|+..|.|....
T Consensus 2 sirv~~in~~yg~--~q~----lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k 75 (242)
T COG4161 2 SIQLNGINCFYGA--HQA----LFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDK 75 (242)
T ss_pred ceEEccccccccc--chh----eeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHH
Confidence 4789999999843 334 999999999999999999999999999999998776 9999999886432
Q ss_pred ---CCCccEEEEeccchhhhccCCccccccc--------ccCCHHH----HHHHHHHhc---------ccCCHHHHHHH-
Q 024032 137 ---NSSHTITMYMEEHNVMRSLQSGFCVYDS--------RGFNYNR----VHEGLEELS---------SWMSEGVHHNQ- 191 (273)
Q Consensus 137 ---~~~~~i~~v~q~~~~~~~~~~~~tv~en--------~~~~~~~----~~~~l~~~~---------~~LSgGqkq~~- 191 (273)
.+|+.+|+|||+.+++|++ ||.+| .+.++++ ..+.++++. ..|||||+||.
T Consensus 76 ~i~~lr~~vgmvfqqy~lwphl----tv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrva 151 (242)
T COG4161 76 AIRDLRRNVGMVFQQYNLWPHL----TVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVA 151 (242)
T ss_pred HHHHHHHhhhhhhhhhccCchh----HHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHH
Confidence 2678899999999987765 99998 2344433 334444443 67999999987
Q ss_pred --Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhcc
Q 024032 192 --RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFS 254 (273)
Q Consensus 192 --r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~ 254 (273)
|+ +.+|++|++||||++|||+ ..++++..- |+|-+++ +.|.+++.|++|+|++.|++.- |+
T Consensus 152 iaralmmkpqvllfdeptaaldpeitaqvv~iikel~~t-gitqvivthev~va~k~as~vvyme~g~ive~g~a~~-ft 229 (242)
T COG4161 152 IARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAET-GITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC-FT 229 (242)
T ss_pred HHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhc-CceEEEEEeehhHHHhhhhheEeeecCeeEeecchhh-cc
Confidence 44 7899999999999999999 557888754 9997777 5689999999999999999765 45
Q ss_pred ChhhH
Q 024032 255 APGLR 259 (273)
Q Consensus 255 ~~~l~ 259 (273)
+|..+
T Consensus 230 ~p~te 234 (242)
T COG4161 230 EPQTE 234 (242)
T ss_pred CccHH
Confidence 55444
No 304
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=9.7e-34 Score=276.06 Aligned_cols=181 Identities=12% Similarity=0.122 Sum_probs=140.8
Q ss_pred CceEEEEEEEEeec-CCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc--CccEEEECCeeCCC----
Q 024032 65 GLNELRHKFLSYRS-GDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS--RSGLVLFAQTSSGN---- 137 (273)
Q Consensus 65 ~~i~~~~v~~~y~~-g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~--~~G~I~i~g~~i~~---- 137 (273)
.+++++|++++|.. +++.+ |+++||+|++||++||+||||||||||+|+|+|+++ ++|+|.++|+++..
T Consensus 256 ~~l~~~~l~~~~~~~~~~~~----l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~ 331 (500)
T TIGR02633 256 VILEARNLTCWDVINPHRKR----VDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPA 331 (500)
T ss_pred ceEEEeCCcccccccccccc----cccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHH
Confidence 36899999998843 23446 999999999999999999999999999999999986 59999999998742
Q ss_pred --CCccEEEEeccchhhhccCCcccccccccC------------C----HHHHHHHHHHhc----------ccCCHHHHH
Q 024032 138 --SSHTITMYMEEHNVMRSLQSGFCVYDSRGF------------N----YNRVHEGLEELS----------SWMSEGVHH 189 (273)
Q Consensus 138 --~~~~i~~v~q~~~~~~~~~~~~tv~en~~~------------~----~~~~~~~l~~~~----------~~LSgGqkq 189 (273)
.++.+++++|++... .++..+|+++|..+ . .+.+.++++.++ ..|||||||
T Consensus 332 ~~~~~~i~~v~q~~~~~-~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkq 410 (500)
T TIGR02633 332 QAIRAGIAMVPEDRKRH-GIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQ 410 (500)
T ss_pred HHHhCCCEEcCcchhhC-CcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHH
Confidence 245789999986310 01334567666321 1 123455666655 579999999
Q ss_pred HH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhh
Q 024032 190 NQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKR 251 (273)
Q Consensus 190 ~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~ 251 (273)
|. |+ +.+|++|||||||++||+. +.++.++++ |.|||++ .+||++++|++|+++..++..+
T Consensus 411 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 489 (500)
T TIGR02633 411 KAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQE-GVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNHA 489 (500)
T ss_pred HHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEcccc
Confidence 87 33 7899999999999999999 335666655 8999888 5689999999999998776554
No 305
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-33 Score=274.97 Aligned_cols=177 Identities=14% Similarity=0.204 Sum_probs=140.4
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEE
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~ 143 (273)
..++++|++++|. ++.+ |+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|. +.++
T Consensus 318 ~~l~~~~l~~~~~--~~~~----l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~------~~i~ 385 (530)
T PRK15064 318 NALEVENLTKGFD--NGPL----FKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN------ANIG 385 (530)
T ss_pred ceEEEEeeEEeeC--Ccee----ecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc------eEEE
Confidence 3689999999984 4556 999999999999999999999999999999999998 9999999874 4689
Q ss_pred EEeccchhhhccCCccccccccc------CCHHHHHHHHHHhc----------ccCCHHHHHHH---Hh-cCCCCEEEEc
Q 024032 144 MYMEEHNVMRSLQSGFCVYDSRG------FNYNRVHEGLEELS----------SWMSEGVHHNQ---RC-LRSDDCALMK 203 (273)
Q Consensus 144 ~v~q~~~~~~~~~~~~tv~en~~------~~~~~~~~~l~~~~----------~~LSgGqkq~~---r~-l~~p~iLlLD 203 (273)
|++|++... +...+|+.+|.. ...+.+.+.++.++ .+||||||||. ++ +.+|++||||
T Consensus 386 ~~~q~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLD 463 (530)
T PRK15064 386 YYAQDHAYD--FENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMD 463 (530)
T ss_pred EEccccccc--CCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 999986421 123457777632 12345666666654 78999999987 33 7899999999
Q ss_pred CcCCCCCHH--HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEe-eecChhhhccC
Q 024032 204 NDAEIDDLK--SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSK-PLDATKRLFSA 255 (273)
Q Consensus 204 EPts~LD~~--~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~-~~g~~~~l~~~ 255 (273)
|||++||+. ..+.++.++.+.|||++ .+||++++|++|+++ ..|++.++++.
T Consensus 464 EPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~ 526 (530)
T PRK15064 464 EPTNHMDMESIESLNMALEKYEGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS 526 (530)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHH
Confidence 999999999 33333333335688888 568999999999998 78888887644
No 306
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=2.4e-33 Score=246.06 Aligned_cols=164 Identities=18% Similarity=0.179 Sum_probs=125.5
Q ss_pred ceEEEEEEEEeec---C--CeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEEC--Ce--eC
Q 024032 66 LNELRHKFLSYRS---G--DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFA--QT--SS 135 (273)
Q Consensus 66 ~i~~~~v~~~y~~---g--~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~--g~--~i 135 (273)
+++++|++++|.. + +..+ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++ |. ++
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~i----l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~ 76 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPV----LKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDL 76 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEE----EecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccch
Confidence 3789999999953 1 1356 999999999999999999999999999999999999 99999998 42 43
Q ss_pred CC---------CCccEEEEeccchhhhccCCccccccccc-------CC----HHHHHHHHHHhc----------ccCCH
Q 024032 136 GN---------SSHTITMYMEEHNVMRSLQSGFCVYDSRG-------FN----YNRVHEGLEELS----------SWMSE 185 (273)
Q Consensus 136 ~~---------~~~~i~~v~q~~~~~~~~~~~~tv~en~~-------~~----~~~~~~~l~~~~----------~~LSg 185 (273)
.. .++.+++++|++.+ +..+|+.||.. .. .+.+.++++.++ .+|||
T Consensus 77 ~~~~~~~~~~~~~~~i~~~~q~~~~----~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~ 152 (224)
T TIGR02324 77 AQASPREVLEVRRKTIGYVSQFLRV----IPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSG 152 (224)
T ss_pred hhcCHHHHHHHHhcceEEEeccccc----CCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCH
Confidence 21 13468999998875 34447776621 11 123444555443 67999
Q ss_pred HHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEE
Q 024032 186 GVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKAL 238 (273)
Q Consensus 186 Gqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl 238 (273)
||+||. |+ +.+|++|||||||++||+. +.++++.++ |.|||++ .+||+++.+
T Consensus 153 G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 153 GEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKAR-GAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcceeEec
Confidence 999986 33 7899999999999999999 345555544 8899998 457888765
No 307
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.4e-34 Score=239.69 Aligned_cols=160 Identities=19% Similarity=0.205 Sum_probs=135.3
Q ss_pred EeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEecc
Q 024032 75 SYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEE 148 (273)
Q Consensus 75 ~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~ 148 (273)
.|..++..+ |+++||++.+||+++|.||||||||||+|+++.++. ++|.+++.|++++. +|.+++|+.|.
T Consensus 10 ~y~a~~a~i----l~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~ 85 (223)
T COG4619 10 GYLAGDAKI----LNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQT 85 (223)
T ss_pred HhhcCCCee----ecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcC
Confidence 355566677 999999999999999999999999999999999999 99999999999874 67889999999
Q ss_pred chhhhccCCccccccccc---------CCHHHHHHHHHHhc----------ccCCHHHHHHHHh----cCCCCEEEEcCc
Q 024032 149 HNVMRSLQSGFCVYDSRG---------FNYNRVHEGLEELS----------SWMSEGVHHNQRC----LRSDDCALMKND 205 (273)
Q Consensus 149 ~~~~~~~~~~~tv~en~~---------~~~~~~~~~l~~~~----------~~LSgGqkq~~r~----l~~p~iLlLDEP 205 (273)
+.+ |+.||+||.- .+.+...+.+++++ ..|||||+||..+ ..-|+|||||||
T Consensus 86 paL-----fg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~ 160 (223)
T COG4619 86 PAL-----FGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEI 160 (223)
T ss_pred ccc-----cccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCc
Confidence 995 5569999943 34566667777776 6799999998744 468999999999
Q ss_pred CCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeE
Q 024032 206 AEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDS 243 (273)
Q Consensus 206 ts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i 243 (273)
||+||+. +++.++.++.+.++++| ++||+++-+..|.+
T Consensus 161 TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 161 TSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHA 212 (223)
T ss_pred hhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcc
Confidence 9999999 34555555558999998 67899999999876
No 308
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=1.7e-32 Score=249.76 Aligned_cols=169 Identities=18% Similarity=0.145 Sum_probs=132.4
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccE
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i 142 (273)
...++++++++. ++.+ |+++||+|++||++||+||||||||||+++|+|+++ ++|+|.++| .+
T Consensus 37 ~~~l~i~nls~~----~~~v----L~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g--------~i 100 (282)
T cd03291 37 DNNLFFSNLCLV----GAPV----LKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG--------RI 100 (282)
T ss_pred CCeEEEEEEEEe----cccc----eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC--------EE
Confidence 457999999984 2446 999999999999999999999999999999999999 999999988 38
Q ss_pred EEEeccchhhhccCCcccccccccC----CHHHHHHHHHHhc--------------------ccCCHHHHHHH---Hh-c
Q 024032 143 TMYMEEHNVMRSLQSGFCVYDSRGF----NYNRVHEGLEELS--------------------SWMSEGVHHNQ---RC-L 194 (273)
Q Consensus 143 ~~v~q~~~~~~~~~~~~tv~en~~~----~~~~~~~~l~~~~--------------------~~LSgGqkq~~---r~-l 194 (273)
+|++|++.++ ..|+++|..+ ....+.+.++.++ ..||+||+||. |+ +
T Consensus 101 ~yv~q~~~l~-----~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~ 175 (282)
T cd03291 101 SFSSQFSWIM-----PGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVY 175 (282)
T ss_pred EEEeCccccc-----ccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHh
Confidence 9999987643 3488887432 1112222222211 47999999986 33 7
Q ss_pred CCCCEEEEcCcCCCCCHHH--HH-HHH---HhcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhcc
Q 024032 195 RSDDCALMKNDAEIDDLKS--SP-KYV---LRRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFS 254 (273)
Q Consensus 195 ~~p~iLlLDEPts~LD~~~--~l-~~l---~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~ 254 (273)
.+|++|||||||++||+.. .+ ..+ ..+ +.|||++ ..||++++|++|+++..|+++++..
T Consensus 176 ~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~-~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 247 (282)
T cd03291 176 KDADLYLLDSPFGYLDVFTEKEIFESCVCKLMA-NKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQS 247 (282)
T ss_pred cCCCEEEEECCCccCCHHHHHHHHHHHHHHhhC-CCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 8999999999999999992 22 222 123 7898888 4589999999999999999999875
No 309
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=2.9e-33 Score=276.22 Aligned_cols=174 Identities=17% Similarity=0.129 Sum_probs=135.2
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEE
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~ 143 (273)
.+++++|++++|.. ++++ |+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.+++. ..++
T Consensus 5 ~~l~i~~l~~~y~~-~~~i----l~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~------~~i~ 73 (556)
T PRK11819 5 YIYTMNRVSKVVPP-KKQI----LKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPG------IKVG 73 (556)
T ss_pred EEEEEeeEEEEeCC-CCee----eeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC------CEEE
Confidence 37999999999952 4567 999999999999999999999999999999999998 9999998752 4689
Q ss_pred EEeccchhhhccCCcccccccccCC-----------------------------------------------HHHHHHHH
Q 024032 144 MYMEEHNVMRSLQSGFCVYDSRGFN-----------------------------------------------YNRVHEGL 176 (273)
Q Consensus 144 ~v~q~~~~~~~~~~~~tv~en~~~~-----------------------------------------------~~~~~~~l 176 (273)
|++|++.++ ..+|+.||..+. .+++.+++
T Consensus 74 ~v~Q~~~~~----~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 149 (556)
T PRK11819 74 YLPQEPQLD----PEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAM 149 (556)
T ss_pred EEecCCCCC----CCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence 999998653 345777774221 01223334
Q ss_pred HHhc--------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH--HHHHHHHhcCCcEEEEc--------eeCCE
Q 024032 177 EELS--------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK--SSPKYVLRRVDFAMVVS--------NIAEI 234 (273)
Q Consensus 177 ~~~~--------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~--~~l~~l~~~~g~tiiiv--------~~ad~ 234 (273)
+.++ .+||||||||. ++ +.+|++|||||||++||+. ..+.++.++.+.|||+| ..||+
T Consensus 150 ~~~gl~~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~~~~~~d~ 229 (556)
T PRK11819 150 DALRCPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLDNVAGW 229 (556)
T ss_pred HhCCCCcccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCe
Confidence 4433 67999999987 33 7899999999999999999 33433333335688888 56899
Q ss_pred EEEEeCCeEe-eecChhhhc
Q 024032 235 YKALKAGDSK-PLDATKRLF 253 (273)
Q Consensus 235 i~vl~~G~i~-~~g~~~~l~ 253 (273)
|++|++|+++ ..|+.+++.
T Consensus 230 i~~l~~g~i~~~~g~~~~~~ 249 (556)
T PRK11819 230 ILELDRGRGIPWEGNYSSWL 249 (556)
T ss_pred EEEEeCCEEEEecCCHHHHH
Confidence 9999999986 678777653
No 310
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=5.3e-33 Score=243.13 Aligned_cols=164 Identities=18% Similarity=0.264 Sum_probs=126.0
Q ss_pred EEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC---------
Q 024032 68 ELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN--------- 137 (273)
Q Consensus 68 ~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~--------- 137 (273)
.+.++.++|+.+ .++ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 2 ~~~~~~~~~~~~-~~i----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 76 (218)
T cd03290 2 QVTNGYFSWGSG-LAT----LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSR 76 (218)
T ss_pred eeeeeEEecCCC-Ccc----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchh
Confidence 467888888643 456 999999999999999999999999999999999998 99999999987642
Q ss_pred CCccEEEEeccchhhhccCCcccccccccC----CHHHHHHHHHHhc--------------------ccCCHHHHHHH--
Q 024032 138 SSHTITMYMEEHNVMRSLQSGFCVYDSRGF----NYNRVHEGLEELS--------------------SWMSEGVHHNQ-- 191 (273)
Q Consensus 138 ~~~~i~~v~q~~~~~~~~~~~~tv~en~~~----~~~~~~~~l~~~~--------------------~~LSgGqkq~~-- 191 (273)
.++.++|++|++.++ ..|+++|... ..+...++++.++ ..|||||+||.
T Consensus 77 ~~~~i~~~~q~~~~~-----~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~l 151 (218)
T cd03290 77 NRYSVAYAAQKPWLL-----NATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICV 151 (218)
T ss_pred hcceEEEEcCCCccc-----cccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHH
Confidence 235689999988642 4588887432 2223333333221 57999999987
Q ss_pred -Hh-cCCCCEEEEcCcCCCCCHHH--------HHHHHHhcCCcEEEEc-------eeCCEEEEEeCCe
Q 024032 192 -RC-LRSDDCALMKNDAEIDDLKS--------SPKYVLRRVDFAMVVS-------NIAEIYKALKAGD 242 (273)
Q Consensus 192 -r~-l~~p~iLlLDEPts~LD~~~--------~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~ 242 (273)
|+ +.+|++|||||||++||+.. .++.+. +.|.|+|++ ..||++++|++|.
T Consensus 152 aral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~-~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 152 ARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQ-DDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred HHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHh-cCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 33 78999999999999999982 222333 347899888 4489999999873
No 311
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1.3e-33 Score=276.03 Aligned_cols=187 Identities=11% Similarity=0.110 Sum_probs=144.3
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCC-----
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNS----- 138 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~----- 138 (273)
.+++++|+++ .+ |+++||+|++|+++||+||||||||||+|+|+|+++ ++|+|.++|.++...
T Consensus 267 ~~l~~~~l~~-------~~----l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~ 335 (510)
T PRK15439 267 PVLTVEDLTG-------EG----FRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQR 335 (510)
T ss_pred ceEEEeCCCC-------CC----ccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHH
Confidence 3688899873 13 999999999999999999999999999999999998 999999999987532
Q ss_pred -CccEEEEeccchhhhccCCccccccccc--------C---C---HHHHHHHHHHhc----------ccCCHHHHHHH--
Q 024032 139 -SHTITMYMEEHNVMRSLQSGFCVYDSRG--------F---N---YNRVHEGLEELS----------SWMSEGVHHNQ-- 191 (273)
Q Consensus 139 -~~~i~~v~q~~~~~~~~~~~~tv~en~~--------~---~---~~~~~~~l~~~~----------~~LSgGqkq~~-- 191 (273)
++.++|++|++.. +.++..+|+.+|.. . . .+.+.++++.++ ..||||||||.
T Consensus 336 ~~~~i~~v~q~~~~-~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~l 414 (510)
T PRK15439 336 LARGLVYLPEDRQS-SGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLI 414 (510)
T ss_pred HhCCcEECCCChhh-CCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHH
Confidence 3568999987421 01133446655521 0 1 123455666654 57999999987
Q ss_pred -Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccC
Q 024032 192 -RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSA 255 (273)
Q Consensus 192 -r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~ 255 (273)
|+ +.+|++|||||||+|||+. +.++++.++ |.|||++ ++||++++|++|+++..++++++..+
T Consensus 415 a~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~-g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~~ 493 (510)
T PRK15439 415 AKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQ-NVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAINVD 493 (510)
T ss_pred HHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccCCHH
Confidence 33 7899999999999999999 345566555 8999998 56899999999999999999887655
Q ss_pred hhhHHHhCC
Q 024032 256 PGLRKCSKI 264 (273)
Q Consensus 256 ~~l~~~~~~ 264 (273)
+.+...|+.
T Consensus 494 ~~~~~~~~~ 502 (510)
T PRK15439 494 TIMRLAFGE 502 (510)
T ss_pred HHHHHhhcC
Confidence 556666643
No 312
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=2.8e-33 Score=303.44 Aligned_cols=179 Identities=11% Similarity=0.082 Sum_probs=149.7
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC----CC
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN----SS 139 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~----~~ 139 (273)
..++++|+++.|..+++.+ |+++||++++||+++|+||||||||||+++|+|+++ ++|+|.++|.++.. .+
T Consensus 927 ~~L~I~nLsK~y~~~~k~a----L~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r 1002 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPSGRPA----VDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVR 1002 (2272)
T ss_pred ceEEEEeEEEEecCCCceE----EEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHh
Confidence 4799999999996445667 999999999999999999999999999999999998 99999999998853 45
Q ss_pred ccEEEEeccchhhhccCCccccccccc-------CC----HHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cC
Q 024032 140 HTITMYMEEHNVMRSLQSGFCVYDSRG-------FN----YNRVHEGLEELS---------SWMSEGVHHNQ---RC-LR 195 (273)
Q Consensus 140 ~~i~~v~q~~~~~~~~~~~~tv~en~~-------~~----~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~ 195 (273)
+.+++++|+..++ ..+||+||.. .. .+++.+.++.++ .+||||||||. ++ +.
T Consensus 1003 ~~IG~~pQ~~~L~----~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~ 1078 (2272)
T TIGR01257 1003 QSLGMCPQHNILF----HHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVG 1078 (2272)
T ss_pred hcEEEEecCCcCC----CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHc
Confidence 6799999998753 4459999832 22 234566677665 68999999987 33 78
Q ss_pred CCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhc
Q 024032 196 SDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLF 253 (273)
Q Consensus 196 ~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~ 253 (273)
+|++|||||||+|||+. +.++++. + |+|||++ .+||||++|++|+++..|+++.+.
T Consensus 1079 ~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~-g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk 1148 (2272)
T TIGR01257 1079 DAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-S-GRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLK 1148 (2272)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHh-C-CCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 99999999999999999 3455663 3 8999999 468999999999999999998774
No 313
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.1e-33 Score=239.12 Aligned_cols=175 Identities=16% Similarity=0.179 Sum_probs=142.7
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEEE
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~~ 144 (273)
.+.+++++.+|......+ |+++|++|.+||.++++||||||||||+|+++|+.+ ..|+|.++|+.+......-|.
T Consensus 3 ~l~~~~~sl~y~g~~~~~----le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergv 78 (259)
T COG4525 3 MLNVSHLSLSYEGKPRSA----LEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGV 78 (259)
T ss_pred eeehhheEEecCCcchhh----hhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCcccee
Confidence 456788999986433334 999999999999999999999999999999999999 999999999999876556689
Q ss_pred EeccchhhhccCCcccccccc-------cCCHH----HHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCCEE
Q 024032 145 YMEEHNVMRSLQSGFCVYDSR-------GFNYN----RVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDDCA 200 (273)
Q Consensus 145 v~q~~~~~~~~~~~~tv~en~-------~~~~~----~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~iL 200 (273)
|||++.++|++ ++.||. +.++. .+.+.+..++ .+||||||||. |+ ..+|++|
T Consensus 79 VFQ~~~LlPWl----~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~L 154 (259)
T COG4525 79 VFQNEALLPWL----NVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLL 154 (259)
T ss_pred EeccCccchhh----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceE
Confidence 99999987665 999994 33332 3445555555 68999999986 55 6799999
Q ss_pred EEcCcCCCCCHH------HHHHHHHhcCCcEEEEce--------eCCEEEEEeC--CeEeeecC
Q 024032 201 LMKNDAEIDDLK------SSPKYVLRRVDFAMVVSN--------IAEIYKALKA--GDSKPLDA 248 (273)
Q Consensus 201 lLDEPts~LD~~------~~l~~l~~~~g~tiiiv~--------~ad~i~vl~~--G~i~~~g~ 248 (273)
+||||+++||.- +++.++.++.|+.+++|+ +|++++||+. |+|++.-+
T Consensus 155 lLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~ 218 (259)
T COG4525 155 LLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLP 218 (259)
T ss_pred eecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecC
Confidence 999999999998 345556677799999983 4799999974 88887544
No 314
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-33 Score=273.63 Aligned_cols=176 Identities=15% Similarity=0.135 Sum_probs=139.4
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC------C
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------S 138 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------~ 138 (273)
.++++++++. .+ ++++||+|++||++||+||||||||||+|+|+|+++ ++|+|+++|+++.. .
T Consensus 257 ~l~~~~~~~~------~~----l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~ 326 (501)
T PRK11288 257 RLRLDGLKGP------GL----REPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAI 326 (501)
T ss_pred EEEEeccccC------Cc----ccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHH
Confidence 5788888732 25 999999999999999999999999999999999999 99999999998753 2
Q ss_pred CccEEEEeccchhhhccCCcccccccccC-------------C----HHHHHHHHHHhc----------ccCCHHHHHHH
Q 024032 139 SHTITMYMEEHNVMRSLQSGFCVYDSRGF-------------N----YNRVHEGLEELS----------SWMSEGVHHNQ 191 (273)
Q Consensus 139 ~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------------~----~~~~~~~l~~~~----------~~LSgGqkq~~ 191 (273)
++.++|++|++... .++..+|+.+|..+ . .+.+.+.++.++ ..||||||||.
T Consensus 327 ~~~i~~~~q~~~~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl 405 (501)
T PRK11288 327 RAGIMLCPEDRKAE-GIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKA 405 (501)
T ss_pred hCCCEEcCcCHhhC-CCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHH
Confidence 35789999986400 01344578777321 1 123555666654 57999999987
Q ss_pred ---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhc
Q 024032 192 ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLF 253 (273)
Q Consensus 192 ---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~ 253 (273)
++ +.+|++|||||||+|||+. +.++++.++ |.|||++ .+||++++|++|+++..|+++++.
T Consensus 406 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 484 (501)
T PRK11288 406 ILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQ-GVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQAT 484 (501)
T ss_pred HHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhC-CCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEccccCC
Confidence 33 7899999999999999999 335566655 8999999 568999999999999999887764
No 315
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=6.5e-34 Score=242.11 Aligned_cols=186 Identities=17% Similarity=0.211 Sum_probs=157.4
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECC-eeCCC-----
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQ-TSSGN----- 137 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g-~~i~~----- 137 (273)
..+++++++.+| ++..+ |+++||++.+||.-+|||||||||||++.+|+|-.+ ++|+++++| .++..
T Consensus 4 ~iL~~~~vsVsF--~GF~A----ln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~ 77 (249)
T COG4674 4 IILYLDGVSVSF--GGFKA----LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHR 77 (249)
T ss_pred ceEEEeceEEEE--cceee----eeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHH
Confidence 468899999998 55555 999999999999999999999999999999999999 999999999 77764
Q ss_pred -CCccEEEEeccchhhhccCCccccccccc-------------------CCHHHHHHHHHHhc---------ccCCHHHH
Q 024032 138 -SSHTITMYMEEHNVMRSLQSGFCVYDSRG-------------------FNYNRVHEGLEELS---------SWMSEGVH 188 (273)
Q Consensus 138 -~~~~i~~v~q~~~~~~~~~~~~tv~en~~-------------------~~~~~~~~~l~~~~---------~~LSgGqk 188 (273)
.+.-||.-||.|..|.. +||+||.. ...+++++.|+..+ ..||.|||
T Consensus 78 IAr~GIGRKFQ~PtVfe~----ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqK 153 (249)
T COG4674 78 IARAGIGRKFQKPTVFEN----LTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQK 153 (249)
T ss_pred HHHhccCccccCCeehhh----ccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchh
Confidence 24568889999998654 49999821 12346777777666 78999999
Q ss_pred HHHHh----cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChh
Q 024032 189 HNQRC----LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATK 250 (273)
Q Consensus 189 q~~r~----l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~ 250 (273)
|+.-+ +++|++|+||||++|+--. ++++.+++ .++|++| .+|++|.||+.|.+.+.|+.+
T Consensus 154 QwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~--~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsld 231 (249)
T COG4674 154 QWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG--KHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLD 231 (249)
T ss_pred hhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc--CceEEEEeccHHHHHHhhheeEEEeccceeecccHH
Confidence 98743 7899999999999999666 56778876 6899999 678999999999999999999
Q ss_pred hhccChhhHHHh
Q 024032 251 RLFSAPGLRKCS 262 (273)
Q Consensus 251 ~l~~~~~l~~~~ 262 (273)
++-++|...++|
T Consensus 232 ~v~~dp~ViEvY 243 (249)
T COG4674 232 EVQNDPKVIEVY 243 (249)
T ss_pred HhhcCcceEeee
Confidence 999888877766
No 316
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=1.5e-33 Score=282.85 Aligned_cols=174 Identities=14% Similarity=0.119 Sum_probs=140.0
Q ss_pred EEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-C--ccEEEECCeeCCC-CCccEEE
Q 024032 69 LRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R--SGLVLFAQTSSGN-SSHTITM 144 (273)
Q Consensus 69 ~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~--~G~I~i~g~~i~~-~~~~i~~ 144 (273)
.++++++| +++.+ |+++||++++||++||+||||||||||+++|+|+++ . +|+|.++|+++.. .+++++|
T Consensus 71 ~~~l~~~~--~~~~i----L~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~y 144 (659)
T PLN03211 71 ISDETRQI--QERTI----LNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGF 144 (659)
T ss_pred cccccccC--CCCee----eeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEE
Confidence 45666666 34567 999999999999999999999999999999999987 4 8999999998753 4567999
Q ss_pred EeccchhhhccCCccccccccc----------CCH----HHHHHHHHHhc--------------ccCCHHHHHHHH---h
Q 024032 145 YMEEHNVMRSLQSGFCVYDSRG----------FNY----NRVHEGLEELS--------------SWMSEGVHHNQR---C 193 (273)
Q Consensus 145 v~q~~~~~~~~~~~~tv~en~~----------~~~----~~~~~~l~~~~--------------~~LSgGqkq~~r---~ 193 (273)
++|+..++ ..+||+||.. .+. +.+++.++.++ ..||||||||.. +
T Consensus 145 v~Q~~~l~----~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~a 220 (659)
T PLN03211 145 VTQDDILY----PHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHE 220 (659)
T ss_pred ECcccccC----CcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHH
Confidence 99998753 3458998732 122 23455666554 359999999872 2
Q ss_pred -cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc---------eeCCEEEEEeCCeEeeecChhhhc
Q 024032 194 -LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS---------NIAEIYKALKAGDSKPLDATKRLF 253 (273)
Q Consensus 194 -l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv---------~~ad~i~vl~~G~i~~~g~~~~l~ 253 (273)
+.+|++|+|||||+|||+. +.+++++++ |+|||++ +++|++++|++|+++..|+++++.
T Consensus 221 L~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~-g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~ 295 (659)
T PLN03211 221 MLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQK-GKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAM 295 (659)
T ss_pred HHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHH
Confidence 7899999999999999999 345666654 8999999 347999999999999999998875
No 317
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=3.4e-33 Score=239.43 Aligned_cols=140 Identities=18% Similarity=0.212 Sum_probs=111.3
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-------CCccEEEEeccchhhhccCCcc
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-------SSHTITMYMEEHNVMRSLQSGF 159 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-------~~~~i~~v~q~~~~~~~~~~~~ 159 (273)
|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++.. .++.+++++|++... .+..
T Consensus 8 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~---~~~~ 84 (190)
T TIGR01166 8 LKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQ---LFAA 84 (190)
T ss_pred ecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhc---cccc
Confidence 999999999999999999999999999999999999 99999999998741 245689999987421 3345
Q ss_pred cccccccC-------CH----HHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH---
Q 024032 160 CVYDSRGF-------NY----NRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK--- 212 (273)
Q Consensus 160 tv~en~~~-------~~----~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~--- 212 (273)
|++||..+ .. +++.++++.++ .+|||||+||. |+ +.+|++|||||||++||+.
T Consensus 85 tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~ 164 (190)
T TIGR01166 85 DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGRE 164 (190)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 88887422 21 23455566554 68999999986 33 7899999999999999999
Q ss_pred ---HHHHHHHhcCCcEEEEcee
Q 024032 213 ---SSPKYVLRRVDFAMVVSNI 231 (273)
Q Consensus 213 ---~~l~~l~~~~g~tiiiv~~ 231 (273)
+.++++.++ |.|||++.|
T Consensus 165 ~~~~~l~~~~~~-~~tili~sH 185 (190)
T TIGR01166 165 QMLAILRRLRAE-GMTVVISTH 185 (190)
T ss_pred HHHHHHHHHHHc-CCEEEEEee
Confidence 345556554 889999854
No 318
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=1.8e-32 Score=275.34 Aligned_cols=198 Identities=13% Similarity=0.118 Sum_probs=154.7
Q ss_pred hhhhhhhhhccchhhhhhhhHHHHHHHhchhhh---------c----------------------cCCCCceEEEEEEEE
Q 024032 27 AKFDECVKLKLDLPNVSTLTPRLRVLREMERLA---------L----------------------IAPDGLNELRHKFLS 75 (273)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~---------~----------------------~~~~~~i~~~~v~~~ 75 (273)
..+..+.....+++++.++++|+.++++.++.. . ....+.++++|++++
T Consensus 381 ~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~ 460 (659)
T TIGR00954 381 DALGRLMLAGRDMTRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLV 460 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEE
Confidence 345566777788899999999999998753210 0 011246899999998
Q ss_pred eecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEEEEeccchhhhc
Q 024032 76 YRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRS 154 (273)
Q Consensus 76 y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~ 154 (273)
|+. ++++ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.+++ ++.+++++|++.++
T Consensus 461 ~~~-~~~i----l~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~------~~~i~~v~Q~~~l~-- 527 (659)
T TIGR00954 461 TPN-GDVL----IESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA------KGKLFYVPQRPYMT-- 527 (659)
T ss_pred CCC-CCee----eecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC------CCcEEEECCCCCCC--
Confidence 863 3456 999999999999999999999999999999999999 999998864 45799999998742
Q ss_pred cCCccccccccc------------CCHHHHHHHHHHhc------------------ccCCHHHHHHH---Hh-cCCCCEE
Q 024032 155 LQSGFCVYDSRG------------FNYNRVHEGLEELS------------------SWMSEGVHHNQ---RC-LRSDDCA 200 (273)
Q Consensus 155 ~~~~~tv~en~~------------~~~~~~~~~l~~~~------------------~~LSgGqkq~~---r~-l~~p~iL 200 (273)
..|++||.. ...+++.++++.++ ..||||||||. |+ +++|+++
T Consensus 528 ---~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~il 604 (659)
T TIGR00954 528 ---LGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFA 604 (659)
T ss_pred ---CcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEE
Confidence 338888832 23456666666654 36999999987 44 7999999
Q ss_pred EEcCcCCCCCHH--HHHHHHHhcCCcEEEEc-------eeCCEEEEEeC
Q 024032 201 LMKNDAEIDDLK--SSPKYVLRRVDFAMVVS-------NIAEIYKALKA 240 (273)
Q Consensus 201 lLDEPts~LD~~--~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~ 240 (273)
||||||++||+. +.+.++.++.|.|+|++ .+||++++|+.
T Consensus 605 lLDEpts~LD~~~~~~l~~~l~~~~~tvI~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 605 ILDECTSAVSVDVEGYMYRLCREFGITLFSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHcCCEEEEEeCchHHHHhCCEEEEEeC
Confidence 999999999999 33444434448999988 56899999963
No 319
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=6.5e-33 Score=257.08 Aligned_cols=190 Identities=22% Similarity=0.239 Sum_probs=153.7
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-C-----ccEEEECCeeCCC
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R-----SGLVLFAQTSSGN 137 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~-----~G~I~i~g~~i~~ 137 (273)
..+++++|++.+|..++.++ .++++|||+|++||.+||||.||||||-..+.|.|+++ . +|+|.|+|+++-.
T Consensus 4 ~~lL~v~nLsV~f~~~~~~~--~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~ 81 (534)
T COG4172 4 MPLLSIRNLSVAFHQEGGTV--EAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLA 81 (534)
T ss_pred CcceeeeccEEEEecCCcce--EeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhc
Confidence 45789999999998665554 45999999999999999999999999999999999986 2 7999999998742
Q ss_pred ---------CCccEEEEeccchhhhccCCccccccc--------ccCC----HHHHHHHHHHhc------------ccCC
Q 024032 138 ---------SSHTITMYMEEHNVMRSLQSGFCVYDS--------RGFN----YNRVHEGLEELS------------SWMS 184 (273)
Q Consensus 138 ---------~~~~i~~v~q~~~~~~~~~~~~tv~en--------~~~~----~~~~~~~l~~~~------------~~LS 184 (273)
...+|+++||+|..- +.+-.|+..- .+.+ ++++.+.++.++ .+||
T Consensus 82 ~se~~lr~iRG~~I~MIFQEPMtS--LNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLS 159 (534)
T COG4172 82 ASERQLRGVRGNKIGMIFQEPMTS--LNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELS 159 (534)
T ss_pred CCHHHHhhhcccceEEEecccccc--cCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccC
Confidence 235799999998631 1111233221 2333 345556666666 8999
Q ss_pred HHHHHHH----HhcCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeee
Q 024032 185 EGVHHNQ----RCLRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPL 246 (273)
Q Consensus 185 gGqkq~~----r~l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~ 246 (273)
||||||+ +++.+|++||.||||++||.. ++++++.++.|+++++| ++||||+||.+|++++.
T Consensus 160 GGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~ 239 (534)
T COG4172 160 GGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVET 239 (534)
T ss_pred cchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeec
Confidence 9999987 227899999999999999998 55788888889999999 67899999999999999
Q ss_pred cChhhhccChh
Q 024032 247 DATKRLFSAPG 257 (273)
Q Consensus 247 g~~~~l~~~~~ 257 (273)
|+++++|.+|.
T Consensus 240 ~~t~~lF~~Pq 250 (534)
T COG4172 240 GTTETLFAAPQ 250 (534)
T ss_pred CcHHHHhhCCC
Confidence 99999997653
No 320
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=1.3e-32 Score=271.38 Aligned_cols=173 Identities=17% Similarity=0.138 Sum_probs=133.8
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEEE
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~~ 144 (273)
+++++|++++|.. ++++ |+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.+++ ...++|
T Consensus 4 ~i~~~nls~~~~~-~~~i----l~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~------~~~i~~ 72 (552)
T TIGR03719 4 IYTMNRVSKVVPP-KKEI----LKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP------GIKVGY 72 (552)
T ss_pred EEEEeeEEEecCC-CCee----ecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC------CCEEEE
Confidence 6899999999952 3567 999999999999999999999999999999999998 999999875 246899
Q ss_pred EeccchhhhccCCcccccccccCC----------------------H-------------------------HHHHHHHH
Q 024032 145 YMEEHNVMRSLQSGFCVYDSRGFN----------------------Y-------------------------NRVHEGLE 177 (273)
Q Consensus 145 v~q~~~~~~~~~~~~tv~en~~~~----------------------~-------------------------~~~~~~l~ 177 (273)
++|++.++ ..+|+.||..+. . .++.++++
T Consensus 73 v~Q~~~~~----~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 148 (552)
T TIGR03719 73 LPQEPQLD----PTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMD 148 (552)
T ss_pred EeccCCCC----CCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHh
Confidence 99998653 345787774221 0 01122233
Q ss_pred Hhc--------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH--HHHHHHHhcCCcEEEEc--------eeCCEE
Q 024032 178 ELS--------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK--SSPKYVLRRVDFAMVVS--------NIAEIY 235 (273)
Q Consensus 178 ~~~--------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~--~~l~~l~~~~g~tiiiv--------~~ad~i 235 (273)
.++ .+||||||||. ++ +.+|++|||||||++||+. ..+.++.++.+.|||+| .+||++
T Consensus 149 ~~~l~~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~~~~~~d~v 228 (552)
T TIGR03719 149 ALRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFLDNVAGWI 228 (552)
T ss_pred hCCCCcccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeE
Confidence 322 67999999987 33 7899999999999999999 33433333335688888 568999
Q ss_pred EEEeCCeEe-eecChhhhc
Q 024032 236 KALKAGDSK-PLDATKRLF 253 (273)
Q Consensus 236 ~vl~~G~i~-~~g~~~~l~ 253 (273)
++|++|+++ ..|+.+++.
T Consensus 229 ~~l~~g~i~~~~g~~~~~~ 247 (552)
T TIGR03719 229 LELDRGRGIPWEGNYSSWL 247 (552)
T ss_pred EEEECCEEEEecCCHHHHH
Confidence 999999976 678877654
No 321
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=4.7e-32 Score=292.62 Aligned_cols=209 Identities=14% Similarity=0.152 Sum_probs=163.4
Q ss_pred hhhhhhhccchhhhhhhhHHHHHHHhchhhhcc---------CCCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCc
Q 024032 29 FDECVKLKLDLPNVSTLTPRLRVLREMERLALI---------APDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVI 99 (273)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~---------~~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge 99 (273)
+..++.....+.++..+.+|+.++++.++.... .....++++|++|+|+.+.+++ |+|+||++++|+
T Consensus 590 l~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~----l~~isl~i~~G~ 665 (1522)
T TIGR00957 590 LNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIERRTIKPGEGNSITVHNATFTWARDLPPT----LNGITFSIPEGA 665 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccccccccCCCCCCcEEEEEeEEEcCCCCCce----eeeeEEEEcCCC
Confidence 445666667788999999999999875432110 0113699999999996544556 999999999999
Q ss_pred EEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEEEEeccchhhhccCCcccccccccC----CHHHHHH
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGF----NYNRVHE 174 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en~~~----~~~~~~~ 174 (273)
+++|+||||||||||+++|+|+++ ++|+|.++| .++|++|++.+ +..|++||..+ +.++.++
T Consensus 666 ~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------~i~yv~Q~~~l-----~~~Ti~eNI~~g~~~~~~~~~~ 732 (1522)
T TIGR00957 666 LVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG--------SVAYVPQQAWI-----QNDSLRENILFGKALNEKYYQQ 732 (1522)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC--------EEEEEcCCccc-----cCCcHHHHhhcCCccCHHHHHH
Confidence 999999999999999999999999 999999987 48999999874 45699999532 3344444
Q ss_pred HHHHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH---HHHHHHH----hcCC
Q 024032 175 GLEELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK---SSPKYVL----RRVD 223 (273)
Q Consensus 175 ~l~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~---~~l~~l~----~~~g 223 (273)
+++.+. .+||||||||. |+ +++|+++||||||++||+. ..++.+. ...+
T Consensus 733 ~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~ 812 (1522)
T TIGR00957 733 VLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKN 812 (1522)
T ss_pred HHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcC
Confidence 333221 57999999987 44 8999999999999999999 2223331 1127
Q ss_pred cEEEEc-------eeCCEEEEEeCCeEeeecChhhhcc
Q 024032 224 FAMVVS-------NIAEIYKALKAGDSKPLDATKRLFS 254 (273)
Q Consensus 224 ~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~ 254 (273)
+|+|++ ..||+|++|++|++++.|+++++.+
T Consensus 813 ~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~ 850 (1522)
T TIGR00957 813 KTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQ 850 (1522)
T ss_pred CEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHh
Confidence 899888 4489999999999999999999874
No 322
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=3.3e-32 Score=273.03 Aligned_cols=179 Identities=20% Similarity=0.240 Sum_probs=146.2
Q ss_pred ceEEEEEEEEeecC--CeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCC----
Q 024032 66 LNELRHKFLSYRSG--DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNS---- 138 (273)
Q Consensus 66 ~i~~~~v~~~y~~g--~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~---- 138 (273)
+++++|+++.|+.+ ..++ |+++||++++||+++|+||||||||||+++|+|+++ ++|+|.++|+++...
T Consensus 4 ~l~~~nl~~~y~~~~~~~~i----l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~ 79 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEV----LKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADA 79 (648)
T ss_pred EEEEeeEEEEeCCCCCCeee----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHH
Confidence 68999999999643 2456 999999999999999999999999999999999999 999999999987631
Q ss_pred -----CccEEEEeccchhhhccCCccccccccc-------CC----HHHHHHHHHHhc---------ccCCHHHHHHH--
Q 024032 139 -----SHTITMYMEEHNVMRSLQSGFCVYDSRG-------FN----YNRVHEGLEELS---------SWMSEGVHHNQ-- 191 (273)
Q Consensus 139 -----~~~i~~v~q~~~~~~~~~~~~tv~en~~-------~~----~~~~~~~l~~~~---------~~LSgGqkq~~-- 191 (273)
++.+++++|++.++ ...|+.||.. .. .+++.+.++.++ .+||+||+||.
T Consensus 80 ~~~~~~~~i~~v~q~~~l~----~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~L 155 (648)
T PRK10535 80 LAQLRREHFGFIFQRYHLL----SHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSI 155 (648)
T ss_pred HHHHHhccEEEEeCCcccC----CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHH
Confidence 45799999998753 3457777632 12 223455566554 77999999986
Q ss_pred -Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhc
Q 024032 192 -RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLF 253 (273)
Q Consensus 192 -r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~ 253 (273)
|+ +++|++|||||||++||+. +.++++.++ |.|++++ ..||++++|++|++++.|++++..
T Consensus 156 AraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~-g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 156 ARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDR-GHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred HHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence 33 7899999999999999999 345555544 8899888 558999999999999999998875
No 323
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=2.3e-32 Score=265.74 Aligned_cols=176 Identities=15% Similarity=0.125 Sum_probs=133.4
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc--CccEEEECCeeCCC-----
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS--RSGLVLFAQTSSGN----- 137 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~--~~G~I~i~g~~i~~----- 137 (273)
..++++|++++|. ++.+ |+++||+|++||+++|+||||||||||+|+|+|+++ ++|+|+++|+++..
T Consensus 259 ~~l~~~~l~~~~~--~~~i----l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~ 332 (490)
T PRK10938 259 PRIVLNNGVVSYN--DRPI----LHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIW 332 (490)
T ss_pred ceEEEeceEEEEC--CeeE----EeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHH
Confidence 4799999999984 4556 999999999999999999999999999999999876 49999999986531
Q ss_pred -CCccEEEEeccchhhhccCCcccccccc--------c----CC---HHHHHHHHHHhc----------ccCCHHHHHHH
Q 024032 138 -SSHTITMYMEEHNVMRSLQSGFCVYDSR--------G----FN---YNRVHEGLEELS----------SWMSEGVHHNQ 191 (273)
Q Consensus 138 -~~~~i~~v~q~~~~~~~~~~~~tv~en~--------~----~~---~~~~~~~l~~~~----------~~LSgGqkq~~ 191 (273)
.++.+++++|++..+.. ...++.++. . .. .+.+.++++.++ .+||||||||.
T Consensus 333 ~~~~~i~~v~q~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv 410 (490)
T PRK10938 333 DIKKHIGYVSSSLHLDYR--VSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLA 410 (490)
T ss_pred HHHhhceEECHHHHhhcc--cCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHH
Confidence 34579999998654211 112333321 0 11 234556666654 68999999987
Q ss_pred ---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------e-eCCEEEEEeCCeEeeecC
Q 024032 192 ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------N-IAEIYKALKAGDSKPLDA 248 (273)
Q Consensus 192 ---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~-~ad~i~vl~~G~i~~~g~ 248 (273)
++ +.+|++|||||||+|||+. +.+++++++.+.|||++ . .||++++|++|++++...
T Consensus 411 ~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~~~ 486 (490)
T PRK10938 411 LIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRYVQ 486 (490)
T ss_pred HHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEeec
Confidence 33 7899999999999999999 34566665523568877 3 479999999999987543
No 324
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4.1e-32 Score=233.98 Aligned_cols=153 Identities=14% Similarity=0.149 Sum_probs=118.9
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCC-CccEEE
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNS-SHTITM 144 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~-~~~i~~ 144 (273)
+++++++++|. ++.+ ++ +||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++... ++.+++
T Consensus 2 l~~~~l~~~~~--~~~l----~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~ 74 (195)
T PRK13541 2 LSLHQLQFNIE--QKNL----FD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTY 74 (195)
T ss_pred eEEEEeeEEEC--CcEE----EE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEe
Confidence 68999999994 3444 54 999999999999999999999999999999999 999999999987543 345788
Q ss_pred EeccchhhhccCCcccccccccC------CHHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCCEEEEcCc
Q 024032 145 YMEEHNVMRSLQSGFCVYDSRGF------NYNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDDCALMKND 205 (273)
Q Consensus 145 v~q~~~~~~~~~~~~tv~en~~~------~~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~iLlLDEP 205 (273)
++|+... ++..|+.+|..+ ..+.+.++++.++ ..||+||+||. |+ +++|+++|||||
T Consensus 75 ~~~~~~~----~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP 150 (195)
T PRK13541 75 IGHNLGL----KLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEV 150 (195)
T ss_pred ccCCcCC----CccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 8877643 456788887422 2234555555554 67999999986 33 789999999999
Q ss_pred CCCCCHH------HHHHHHHhcCCcEEEEcee
Q 024032 206 AEIDDLK------SSPKYVLRRVDFAMVVSNI 231 (273)
Q Consensus 206 ts~LD~~------~~l~~l~~~~g~tiiiv~~ 231 (273)
|++||+. +.++...+ .+.|+|++.|
T Consensus 151 ~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh 181 (195)
T PRK13541 151 ETNLSKENRDLLNNLIVMKAN-SGGIVLLSSH 181 (195)
T ss_pred cccCCHHHHHHHHHHHHHHHh-CCCEEEEEeC
Confidence 9999999 22333333 3889998843
No 325
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-32 Score=267.88 Aligned_cols=178 Identities=13% Similarity=0.168 Sum_probs=135.5
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCC-----
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNS----- 138 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~----- 138 (273)
..++++|+++.| +.+ |+++||+|++||++||+||||||||||+++|+|+.+ ++|+|.++|+++...
T Consensus 249 ~~i~~~~l~~~~----~~~----l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 320 (491)
T PRK10982 249 VILEVRNLTSLR----QPS----IRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEA 320 (491)
T ss_pred cEEEEeCccccc----Ccc----cceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHH
Confidence 468999999873 235 999999999999999999999999999999999999 999999999987532
Q ss_pred -CccEEEEeccchhhhccCCccccccc-----c-------cC-C----HHHHHHHHHHhc----------ccCCHHHHHH
Q 024032 139 -SHTITMYMEEHNVMRSLQSGFCVYDS-----R-------GF-N----YNRVHEGLEELS----------SWMSEGVHHN 190 (273)
Q Consensus 139 -~~~i~~v~q~~~~~~~~~~~~tv~en-----~-------~~-~----~~~~~~~l~~~~----------~~LSgGqkq~ 190 (273)
++.++|++|++... .++..+++.+| . +. . .+.+.+.++.++ .+||||||||
T Consensus 321 ~~~~i~~~~q~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qr 399 (491)
T PRK10982 321 INHGFALVTEERRST-GIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQK 399 (491)
T ss_pred HHCCCEEcCCchhhC-CcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHH
Confidence 34588998875310 01122233222 1 11 1 123444555543 6899999998
Q ss_pred H---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhh
Q 024032 191 Q---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRL 252 (273)
Q Consensus 191 ~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l 252 (273)
. |+ +.+|++|||||||+|||+. +.++.+.++ |.|||++ .+||++++|++|+++..++.+++
T Consensus 400 v~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~-~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 478 (491)
T PRK10982 400 VIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKK-DKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTKTT 478 (491)
T ss_pred HHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHC-CCEEEEECCChHHHHhhCCEEEEEECCEEEEEEccccC
Confidence 7 33 7899999999999999999 335556655 8999998 67899999999999988776543
No 326
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=8.2e-32 Score=261.04 Aligned_cols=174 Identities=16% Similarity=0.230 Sum_probs=133.6
Q ss_pred CceEEEEEEEEeecCC-eeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccE
Q 024032 65 GLNELRHKFLSYRSGD-FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~-~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i 142 (273)
.+++++|+++.|..+. +++ |+++||+|++|+++||+||||||||||+++|+|+++ ++|+|.++|.+. .+
T Consensus 20 ~mL~lknL~~~~~~~~~~~I----L~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~-----~i 90 (549)
T PRK13545 20 PFDKLKDLFFRSKDGEYHYA----LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA-----LI 90 (549)
T ss_pred ceeEEEEEEEecCCCccceE----EeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee-----eE
Confidence 3688999998886532 346 999999999999999999999999999999999998 999999999752 11
Q ss_pred EEEeccchhhhccCCccccccccc-------CCHHH----HHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCC
Q 024032 143 TMYMEEHNVMRSLQSGFCVYDSRG-------FNYNR----VHEGLEELS---------SWMSEGVHHNQ---RC-LRSDD 198 (273)
Q Consensus 143 ~~v~q~~~~~~~~~~~~tv~en~~-------~~~~~----~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~ 198 (273)
+ +...+ ...+|+++|.. .+.++ +.++++.++ ..||||||||. |+ +.+|+
T Consensus 91 ~---~~~~l----~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~ 163 (549)
T PRK13545 91 A---ISSGL----NGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPD 163 (549)
T ss_pred E---ecccc----CCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCC
Confidence 1 11111 23347777632 22222 334455444 67999999986 33 78999
Q ss_pred EEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccC
Q 024032 199 CALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSA 255 (273)
Q Consensus 199 iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~ 255 (273)
+|||||||++||+. +.++++.++ |.|||++ .+||++++|++|+++..|++++++..
T Consensus 164 LLLLDEPTsgLD~~sr~~LlelL~el~~~-G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~ 233 (549)
T PRK13545 164 ILVIDEALSVGDQTFTKKCLDKMNEFKEQ-GKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDH 233 (549)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhh
Confidence 99999999999999 334555444 8899888 46899999999999999999888653
No 327
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=8.1e-32 Score=222.16 Aligned_cols=129 Identities=22% Similarity=0.321 Sum_probs=108.3
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEEEE
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~~v 145 (273)
++++++++.|. +.++ ++++||++++||+++|+||||||||||+++|+|+++ ++|+|+++|. ..++|+
T Consensus 1 l~~~~l~~~~~--~~~~----l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~------~~i~~~ 68 (144)
T cd03221 1 IELENLSKTYG--GKLL----LKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST------VKIGYF 68 (144)
T ss_pred CEEEEEEEEEC--CceE----EEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe------EEEEEE
Confidence 46899999884 3456 999999999999999999999999999999999999 9999999985 356666
Q ss_pred eccchhhhccCCcccccccccCCHHHHHHHHHHhcccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH--HHHHHHH
Q 024032 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK--SSPKYVL 219 (273)
Q Consensus 146 ~q~~~~~~~~~~~~tv~en~~~~~~~~~~~l~~~~~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~--~~l~~l~ 219 (273)
+| ||+||+||. |+ +++|+++||||||++||+. ..+.++.
T Consensus 69 ~~-----------------------------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l 113 (144)
T cd03221 69 EQ-----------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEAL 113 (144)
T ss_pred cc-----------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence 65 999999986 33 7899999999999999999 3333333
Q ss_pred hcCCcEEEEc--------eeCCEEEEEeCCe
Q 024032 220 RRVDFAMVVS--------NIAEIYKALKAGD 242 (273)
Q Consensus 220 ~~~g~tiiiv--------~~ad~i~vl~~G~ 242 (273)
++.+.|++++ .+||++++|++|+
T Consensus 114 ~~~~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 114 KEYPGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred HHcCCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 3336788888 4589999999985
No 328
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=1.2e-31 Score=268.69 Aligned_cols=175 Identities=18% Similarity=0.183 Sum_probs=135.5
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEE
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~ 143 (273)
..++++|++++| +++.+ |+++||+|++|+++||+||||||||||+++|+|+++ ++|+|.+++. ..++
T Consensus 311 ~~l~~~~l~~~y--~~~~i----l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------~~ig 378 (638)
T PRK10636 311 PLLKMEKVSAGY--GDRII----LDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG------IKLG 378 (638)
T ss_pred ceEEEEeeEEEe--CCeee----eccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC------EEEE
Confidence 368999999998 45667 999999999999999999999999999999999998 9999999642 2589
Q ss_pred EEeccchhhhccCCcccccccc-----cCCHHHHHHHHHHhc----------ccCCHHHHHHH---Hh-cCCCCEEEEcC
Q 024032 144 MYMEEHNVMRSLQSGFCVYDSR-----GFNYNRVHEGLEELS----------SWMSEGVHHNQ---RC-LRSDDCALMKN 204 (273)
Q Consensus 144 ~v~q~~~~~~~~~~~~tv~en~-----~~~~~~~~~~l~~~~----------~~LSgGqkq~~---r~-l~~p~iLlLDE 204 (273)
|++|+.... +....++.++. ......+.+.++.++ ..||||||||+ ++ +.+|++|||||
T Consensus 379 y~~Q~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDE 456 (638)
T PRK10636 379 YFAQHQLEF--LRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDE 456 (638)
T ss_pred EecCcchhh--CCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 999974211 12233555542 112345566666655 67999999987 33 78999999999
Q ss_pred cCCCCCHH--HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEe-eecChhhhc
Q 024032 205 DAEIDDLK--SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSK-PLDATKRLF 253 (273)
Q Consensus 205 Pts~LD~~--~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~-~~g~~~~l~ 253 (273)
||++||+. ..+..+.++.+.|||+| .+||++++|++|+++ ..|+.+++.
T Consensus 457 Pt~~LD~~~~~~l~~~L~~~~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 516 (638)
T PRK10636 457 PTNHLDLDMRQALTEALIDFEGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQ 516 (638)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence 99999999 33333333335588888 568999999999997 788888763
No 329
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.98 E-value=2.6e-31 Score=262.41 Aligned_cols=176 Identities=15% Similarity=0.155 Sum_probs=135.3
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEE
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~ 143 (273)
.+++++|++++|. ++++ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.+++ + ..++
T Consensus 323 ~~l~~~~l~~~~~--~~~~----l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~-----~~i~ 390 (556)
T PRK11819 323 KVIEAENLSKSFG--DRLL----IDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-T-----VKLA 390 (556)
T ss_pred eEEEEEeEEEEEC--Ceee----ecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-c-----eEEE
Confidence 4799999999984 4567 999999999999999999999999999999999999 999999854 2 2589
Q ss_pred EEeccchhhhccCCcccccccccC---------CHHHHHHHHHHhc----------ccCCHHHHHHH---Hh-cCCCCEE
Q 024032 144 MYMEEHNVMRSLQSGFCVYDSRGF---------NYNRVHEGLEELS----------SWMSEGVHHNQ---RC-LRSDDCA 200 (273)
Q Consensus 144 ~v~q~~~~~~~~~~~~tv~en~~~---------~~~~~~~~l~~~~----------~~LSgGqkq~~---r~-l~~p~iL 200 (273)
|++|+... ++..+|+++|..+ ......++++.++ .+||||||||. ++ +.+|++|
T Consensus 391 ~v~q~~~~---~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~ll 467 (556)
T PRK11819 391 YVDQSRDA---LDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVL 467 (556)
T ss_pred EEeCchhh---cCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 99998622 2445688887321 1223445565554 68999999987 33 7899999
Q ss_pred EEcCcCCCCCHH--HHHHHHHhcCCcEEEEc--------eeCCEEEEEeC-CeEe-eecChhhhccC
Q 024032 201 LMKNDAEIDDLK--SSPKYVLRRVDFAMVVS--------NIAEIYKALKA-GDSK-PLDATKRLFSA 255 (273)
Q Consensus 201 lLDEPts~LD~~--~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~-G~i~-~~g~~~~l~~~ 255 (273)
||||||+|||+. ..+.++.++...|||++ .+||++++|++ |++. ..|+.+++++.
T Consensus 468 lLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~ 534 (556)
T PRK11819 468 LLDEPTNDLDVETLRALEEALLEFPGCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEED 534 (556)
T ss_pred EEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHH
Confidence 999999999999 33333333333477777 56899999986 7876 47888777643
No 330
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.98 E-value=6.5e-32 Score=250.47 Aligned_cols=150 Identities=19% Similarity=0.319 Sum_probs=122.5
Q ss_pred EEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC---CCccEEEEeccchhhhccCCcccccccccC-------CH--
Q 024032 103 LMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---SSHTITMYMEEHNVMRSLQSGFCVYDSRGF-------NY-- 169 (273)
Q Consensus 103 ivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---~~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~~-- 169 (273)
|+||||||||||+++|+|+++ ++|+|.++|+++.. .++.++|++|++.++ ..+||++|..+ ..
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~----~~~tv~enl~~~~~~~~~~~~~ 76 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALF----PHMTVEENVAFGLKMRKVPRAE 76 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCcccc----CCCcHHHHHHHHHhhcCCCHHH
Confidence 689999999999999999999 99999999998754 346799999998754 44589988432 21
Q ss_pred --HHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEE
Q 024032 170 --NRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVV 228 (273)
Q Consensus 170 --~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiii 228 (273)
+++.++++.++ .+||||||||. |+ +.+|++|||||||++||+. +.++++.++.|.|+|+
T Consensus 77 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiii 156 (325)
T TIGR01187 77 IKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVF 156 (325)
T ss_pred HHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 23556666664 67999999987 33 7899999999999999999 3355565555899999
Q ss_pred c--------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 229 S--------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 229 v--------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
+ .+||++++|++|+++..|++++++..+
T Consensus 157 vTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~~ 192 (325)
T TIGR01187 157 VTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEEP 192 (325)
T ss_pred EeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 8 468999999999999999999998654
No 331
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.97 E-value=2.3e-31 Score=262.51 Aligned_cols=174 Identities=14% Similarity=0.147 Sum_probs=133.5
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEE
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~ 143 (273)
.+++++|++++|. ++++ |+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.+++ + ..++
T Consensus 321 ~~l~~~~l~~~~~--~~~~----l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~-----~~i~ 388 (552)
T TIGR03719 321 KVIEAENLSKGFG--DKLL----IDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-T-----VKLA 388 (552)
T ss_pred eEEEEeeEEEEEC--Ceee----eccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-c-----eEEE
Confidence 4689999999984 4567 999999999999999999999999999999999998 999999844 2 2589
Q ss_pred EEeccchhhhccCCcccccccccC-------C--HHHHHHHHHHhc----------ccCCHHHHHHH---Hh-cCCCCEE
Q 024032 144 MYMEEHNVMRSLQSGFCVYDSRGF-------N--YNRVHEGLEELS----------SWMSEGVHHNQ---RC-LRSDDCA 200 (273)
Q Consensus 144 ~v~q~~~~~~~~~~~~tv~en~~~-------~--~~~~~~~l~~~~----------~~LSgGqkq~~---r~-l~~p~iL 200 (273)
|++|++.. ++..+|+.+|..+ . ...+.+.++.++ .+||||||||. ++ +.+|++|
T Consensus 389 ~v~q~~~~---~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~ll 465 (552)
T TIGR03719 389 YVDQSRDA---LDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVL 465 (552)
T ss_pred EEeCCccc---cCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEE
Confidence 99998632 1445688887321 1 223445566554 68999999987 33 7899999
Q ss_pred EEcCcCCCCCHH--HHHHHHHhcCCcEEEEc--------eeCCEEEEEeC-CeEe-eecChhhhc
Q 024032 201 LMKNDAEIDDLK--SSPKYVLRRVDFAMVVS--------NIAEIYKALKA-GDSK-PLDATKRLF 253 (273)
Q Consensus 201 lLDEPts~LD~~--~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~-G~i~-~~g~~~~l~ 253 (273)
||||||++||+. ..+.++.++.+.|||++ .+||++++|++ |+++ ..|+.+++.
T Consensus 466 lLDEPt~~LD~~~~~~l~~~l~~~~~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~ 530 (552)
T TIGR03719 466 LLDEPTNDLDVETLRALEEALLEFAGCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYE 530 (552)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHH
Confidence 999999999999 33333333334478777 56899999986 5776 567776654
No 332
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.97 E-value=2.2e-31 Score=266.56 Aligned_cols=173 Identities=16% Similarity=0.170 Sum_probs=135.1
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEE
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~ 143 (273)
.+++++|++++| +++++ |+++||+|++|+++||+||||||||||+++|+|+++ ++|+|.+ |.++ .++
T Consensus 318 ~~l~~~~l~~~~--~~~~i----l~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~-----~i~ 385 (635)
T PRK11147 318 IVFEMENVNYQI--DGKQL----VKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL-----EVA 385 (635)
T ss_pred ceEEEeeeEEEE--CCeEE----EcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc-----EEE
Confidence 368999999998 44667 999999999999999999999999999999999998 9999998 5432 589
Q ss_pred EEeccchhhhccCCcccccccccC-------C--HHHHHHHHHHhc----------ccCCHHHHHHH---Hh-cCCCCEE
Q 024032 144 MYMEEHNVMRSLQSGFCVYDSRGF-------N--YNRVHEGLEELS----------SWMSEGVHHNQ---RC-LRSDDCA 200 (273)
Q Consensus 144 ~v~q~~~~~~~~~~~~tv~en~~~-------~--~~~~~~~l~~~~----------~~LSgGqkq~~---r~-l~~p~iL 200 (273)
|++|+... +...+||.+|... . ...+.+.++.++ ..||||||||. ++ +.+|++|
T Consensus 386 y~~q~~~~---l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lL 462 (635)
T PRK11147 386 YFDQHRAE---LDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLL 462 (635)
T ss_pred EEeCcccc---cCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 99997532 2445588887321 1 234555565544 67999999987 33 7899999
Q ss_pred EEcCcCCCCCHH--HHHHHHHhcCCcEEEEc--------eeCCEEEEEe-CCeEee-ecChhhh
Q 024032 201 LMKNDAEIDDLK--SSPKYVLRRVDFAMVVS--------NIAEIYKALK-AGDSKP-LDATKRL 252 (273)
Q Consensus 201 lLDEPts~LD~~--~~l~~l~~~~g~tiiiv--------~~ad~i~vl~-~G~i~~-~g~~~~l 252 (273)
||||||++||+. ..+.++.++.+.|||+| .+||++++|+ +|++.. .|+-.+.
T Consensus 463 lLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y 526 (635)
T PRK11147 463 ILDEPTNDLDVETLELLEELLDSYQGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDA 526 (635)
T ss_pred EEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHH
Confidence 999999999999 44555444446688888 5689999998 899876 4555554
No 333
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=5.1e-32 Score=233.59 Aligned_cols=194 Identities=14% Similarity=0.170 Sum_probs=144.7
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCc
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSH 140 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~ 140 (273)
+++++..+.|..| .+.+..+|+++|++|++|+++.|+|.||||||||+|+|+|-+. ++|+|.|+|.++.. ...
T Consensus 2 i~~~~~~~~f~~g-~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~ 80 (263)
T COG1101 2 ISLSNATKTFFKG-TPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRAN 80 (263)
T ss_pred cccccceeeecCC-ChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhh
Confidence 4567777777554 2333456999999999999999999999999999999999999 99999999999975 334
Q ss_pred cEEEEeccchhhhccCCcccccccc----------cCC-------HHHHHHHHHHhc-----------ccCCHHHHHHHH
Q 024032 141 TITMYMEEHNVMRSLQSGFCVYDSR----------GFN-------YNRVHEGLEELS-----------SWMSEGVHHNQR 192 (273)
Q Consensus 141 ~i~~v~q~~~~~~~~~~~~tv~en~----------~~~-------~~~~~~~l~~~~-----------~~LSgGqkq~~r 192 (273)
.++-|||+|..- ....+|+.||. ++. .+...+.++.++ ..|||||||...
T Consensus 81 ~larVfQdp~~g--t~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQals 158 (263)
T COG1101 81 LLARVFQDPLAG--TAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALS 158 (263)
T ss_pred HHHHHhcchhhC--CcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHH
Confidence 577899998642 34567999992 222 122334444444 679999999763
Q ss_pred h----cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChh--hh
Q 024032 193 C----LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATK--RL 252 (273)
Q Consensus 193 ~----l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~--~l 252 (273)
+ ++.|+||+|||-|++|||. +.-.++.++.+.|.+|| ++-+|.++|++|+|+.+-+-+ .-
T Consensus 159 L~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv~g~~k~~ 238 (263)
T COG1101 159 LLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDVTGEEKAS 238 (263)
T ss_pred HHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEcccccccC
Confidence 2 8999999999999999999 22244556668899999 456999999999999764332 22
Q ss_pred ccChhhHHHhC
Q 024032 253 FSAPGLRKCSK 263 (273)
Q Consensus 253 ~~~~~l~~~~~ 263 (273)
+..+.+...|.
T Consensus 239 L~v~dli~~F~ 249 (263)
T COG1101 239 LTVLDLIQMFE 249 (263)
T ss_pred CcHHHHHHHHH
Confidence 34444554443
No 334
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.97 E-value=2.2e-31 Score=237.95 Aligned_cols=154 Identities=15% Similarity=0.147 Sum_probs=117.9
Q ss_pred eeeeeeEEc-----CCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEEEEeccchhhhccCCcccc
Q 024032 88 IQKGGMDIP-----PVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCV 161 (273)
Q Consensus 88 L~~is~~i~-----~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv 161 (273)
+++++|++. +||+++|+||||||||||+++|+|+++ ++|+|.++|. .+++++|+... .+..||
T Consensus 10 ~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~-------~i~~~~q~~~~----~~~~tv 78 (246)
T cd03237 10 LGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD-------TVSYKPQYIKA----DYEGTV 78 (246)
T ss_pred cCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc-------eEEEecccccC----CCCCCH
Confidence 677777765 799999999999999999999999999 9999999885 57889888764 345688
Q ss_pred cccccC-------CHHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHH
Q 024032 162 YDSRGF-------NYNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSP 215 (273)
Q Consensus 162 ~en~~~-------~~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l 215 (273)
.||... ......++++.++ ..|||||+||. ++ +.+|+++||||||++||+. +.+
T Consensus 79 ~e~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l 158 (246)
T cd03237 79 RDLLSSITKDFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVI 158 (246)
T ss_pred HHHHHHHhhhccccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 887421 1122345555554 68999999987 33 7899999999999999999 345
Q ss_pred HHHHhcCCcEEEEc--------eeCCEEEEEeCCeEe--eecChhhh
Q 024032 216 KYVLRRVDFAMVVS--------NIAEIYKALKAGDSK--PLDATKRL 252 (273)
Q Consensus 216 ~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~--~~g~~~~l 252 (273)
+++.++.+.|||++ .+||++++|+++..+ ..++++++
T Consensus 159 ~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~ 205 (246)
T cd03237 159 RRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSL 205 (246)
T ss_pred HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHH
Confidence 56655448899999 468999999765443 34555554
No 335
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=8.8e-32 Score=238.99 Aligned_cols=165 Identities=16% Similarity=0.149 Sum_probs=125.9
Q ss_pred cceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC----CCccEEEEeccchhhhccCCccc
Q 024032 86 GGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN----SSHTITMYMEEHNVMRSLQSGFC 160 (273)
Q Consensus 86 ~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~----~~~~i~~v~q~~~~~~~~~~~~t 160 (273)
.|++|+||+|++|++++++|||||||||++|+|+|++. ++|.|.++|.+... .-+++++|+.+.... ...+.
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql---~Wdlp 114 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQL---WWDLP 114 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhhee---eeech
Confidence 46999999999999999999999999999999999998 99999999987643 224566665544321 00111
Q ss_pred cccc-------ccCCHHHHHHHHHHhc-------------ccCCHHHHHHH--Hh--cCCCCEEEEcCcCCCCCHH----
Q 024032 161 VYDS-------RGFNYNRVHEGLEELS-------------SWMSEGVHHNQ--RC--LRSDDCALMKNDAEIDDLK---- 212 (273)
Q Consensus 161 v~en-------~~~~~~~~~~~l~~~~-------------~~LSgGqkq~~--r~--l~~p~iLlLDEPts~LD~~---- 212 (273)
+.+. ...+.++..+.++.+. ..||.|||.|. ++ +++|++|+|||||-|||..
T Consensus 115 ~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ 194 (325)
T COG4586 115 ALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQAN 194 (325)
T ss_pred hhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHH
Confidence 1111 1233344433333322 67999998765 22 8999999999999999998
Q ss_pred --HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhc
Q 024032 213 --SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLF 253 (273)
Q Consensus 213 --~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~ 253 (273)
+.+++.+++++.||+++ .+||||++|++|+++.+|+.+++.
T Consensus 195 ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~ 245 (325)
T COG4586 195 IREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQ 245 (325)
T ss_pred HHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHH
Confidence 45677888889999999 678999999999999999988764
No 336
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.97 E-value=1e-31 Score=226.92 Aligned_cols=190 Identities=16% Similarity=0.224 Sum_probs=151.4
Q ss_pred CceEEEEEEEEeecC-----CeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCC--
Q 024032 65 GLNELRHKFLSYRSG-----DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSG-- 136 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g-----~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~-- 136 (273)
.+++++|++++|.+. ...+ .|++.|||++++|+.+||||.||||||||.|+|+|+++ ++|+|.++|+.+.
T Consensus 3 ~LLeV~nLsKtF~~~~~lf~r~~~--~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~ 80 (267)
T COG4167 3 TLLEVRNLSKTFRYRTGLFRRQTV--EAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFG 80 (267)
T ss_pred chhhhhhhhhhhhhhhhhhhhhhh--hcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCcccccc
Confidence 467889999988763 2222 46999999999999999999999999999999999999 9999999999874
Q ss_pred ---CCCccEEEEeccchhh--hccCCccccccc-----ccC----CHHHHHHHHHHhc----------ccCCHHHHHHH-
Q 024032 137 ---NSSHTITMYMEEHNVM--RSLQSGFCVYDS-----RGF----NYNRVHEGLEELS----------SWMSEGVHHNQ- 191 (273)
Q Consensus 137 ---~~~~~i~~v~q~~~~~--~~~~~~~tv~en-----~~~----~~~~~~~~l~~~~----------~~LSgGqkq~~- 191 (273)
...++|.++||+++.- |++. -.++.|. ..+ ..+++.+.+..++ ..||-|||||+
T Consensus 81 Dy~~R~k~IRMiFQDpnts~NPRl~-iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVa 159 (267)
T COG4167 81 DYSFRSKRIRMIFQDPNTSLNPRLR-IGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVA 159 (267)
T ss_pred chHhhhhheeeeecCCccccChhhh-hhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHH
Confidence 2457899999998742 1110 0122222 122 2345667788877 67999999987
Q ss_pred --Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhcc
Q 024032 192 --RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFS 254 (273)
Q Consensus 192 --r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~ 254 (273)
|+ +-+|+|+|.||..++||.. ++..++.++.|.+-|.| .++|.|+||+.|++++.|++.++++
T Consensus 160 LARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v~a 239 (267)
T COG4167 160 LARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLA 239 (267)
T ss_pred HHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCChhhhhc
Confidence 44 6899999999999999998 33456777779999998 6789999999999999999999998
Q ss_pred Chh
Q 024032 255 APG 257 (273)
Q Consensus 255 ~~~ 257 (273)
+|.
T Consensus 240 ~P~ 242 (267)
T COG4167 240 SPL 242 (267)
T ss_pred CCc
Confidence 764
No 337
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.2e-31 Score=229.27 Aligned_cols=177 Identities=15% Similarity=0.119 Sum_probs=139.3
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhC--cc-CccEEEECCeeCCC-----
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSV--LS-RSGLVLFAQTSSGN----- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl--~~-~~G~I~i~g~~i~~----- 137 (273)
+++++|++.+.... +.+ |+++||+|++||+.+|+||||||||||.++|+|. |+ ++|+|.++|+++.+
T Consensus 3 ~L~I~dLhv~v~~~-keI----LkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~E 77 (251)
T COG0396 3 MLEIKDLHVEVEGK-KEI----LKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDE 77 (251)
T ss_pred eeEEeeeEEEecCc-hhh----hcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhH
Confidence 68999999987421 467 9999999999999999999999999999999997 56 89999999999975
Q ss_pred -CCccEEEEeccchhhhccCCcccccccc--------c------CCHHHHHHHHHHhc-----------ccCCHHHHHHH
Q 024032 138 -SSHTITMYMEEHNVMRSLQSGFCVYDSR--------G------FNYNRVHEGLEELS-----------SWMSEGVHHNQ 191 (273)
Q Consensus 138 -~~~~i~~v~q~~~~~~~~~~~~tv~en~--------~------~~~~~~~~~l~~~~-----------~~LSgGqkq~~ 191 (273)
.+.-+..-||.|.-++. .++.+.. . ...+++++.++.++ ..||||||+|.
T Consensus 78 RAr~GifLafQ~P~ei~G----V~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~ 153 (251)
T COG0396 78 RARAGIFLAFQYPVEIPG----VTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRN 153 (251)
T ss_pred HHhcCCEEeecCCccCCC----eeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHH
Confidence 23456777898886443 3544431 1 11334555566555 67999999875
Q ss_pred ----HhcCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEcee---------CCEEEEEeCCeEeeecChhhh
Q 024032 192 ----RCLRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVSNI---------AEIYKALKAGDSKPLDATKRL 252 (273)
Q Consensus 192 ----r~l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv~~---------ad~i~vl~~G~i~~~g~~~~l 252 (273)
.++.+|++.|||||-||||.. +.+..++.+ |.++++|+| .|++.||-+|+|+..|.+ ++
T Consensus 154 EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~-~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~-el 231 (251)
T COG0396 154 EILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREE-GRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP-EL 231 (251)
T ss_pred HHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcC-CCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-HH
Confidence 337899999999999999999 335667665 888888822 499999999999999998 55
Q ss_pred c
Q 024032 253 F 253 (273)
Q Consensus 253 ~ 253 (273)
.
T Consensus 232 ~ 232 (251)
T COG0396 232 A 232 (251)
T ss_pred H
Confidence 4
No 338
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=7.9e-31 Score=262.67 Aligned_cols=176 Identities=16% Similarity=0.128 Sum_probs=127.4
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEEE
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~~ 144 (273)
+|.++|++++| +++++ |+++||+|++|+++||+||||||||||||+|+|+++ ++|+|.++|.. .+++
T Consensus 1 ~i~i~nls~~~--g~~~~----l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~------~i~~ 68 (638)
T PRK10636 1 MIVFSSLQIRR--GVRVL----LDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW------QLAW 68 (638)
T ss_pred CEEEEEEEEEe--CCcee----ecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC------EEEE
Confidence 47899999999 45667 999999999999999999999999999999999988 99999998752 2555
Q ss_pred Eeccchhhhc-----c------CCccccc--------------------ccc-c-CCHHHHHHHHHHhc----------c
Q 024032 145 YMEEHNVMRS-----L------QSGFCVY--------------------DSR-G-FNYNRVHEGLEELS----------S 181 (273)
Q Consensus 145 v~q~~~~~~~-----~------~~~~tv~--------------------en~-~-~~~~~~~~~l~~~~----------~ 181 (273)
+.|+...+.. . +..++.. +.. . ....++.++++.++ .
T Consensus 69 ~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~ 148 (638)
T PRK10636 69 VNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVS 148 (638)
T ss_pred EecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchh
Confidence 5553211000 0 0000000 000 0 01234556666655 5
Q ss_pred cCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH--HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEe-ee
Q 024032 182 WMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK--SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSK-PL 246 (273)
Q Consensus 182 ~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~--~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~-~~ 246 (273)
.||||||||+ ++ +.+|++|||||||++||+. ..+..+.++.+.|||+| .+||++++|++|+++ ..
T Consensus 149 ~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~~l~~~~d~i~~L~~G~i~~~~ 228 (638)
T PRK10636 149 DFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQSLFEYT 228 (638)
T ss_pred hcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHhcCEEEEEeCCEEEEec
Confidence 7999999987 33 7899999999999999999 33444444446788888 568999999999996 45
Q ss_pred cChhhhc
Q 024032 247 DATKRLF 253 (273)
Q Consensus 247 g~~~~l~ 253 (273)
|+.....
T Consensus 229 g~~~~~~ 235 (638)
T PRK10636 229 GNYSSFE 235 (638)
T ss_pred CCHHHHH
Confidence 6665543
No 339
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.97 E-value=4e-31 Score=283.11 Aligned_cols=177 Identities=14% Similarity=0.092 Sum_probs=143.5
Q ss_pred ceEEEEEEEEeec--CCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc----CccEEEECCeeCC-CC
Q 024032 66 LNELRHKFLSYRS--GDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS----RSGLVLFAQTSSG-NS 138 (273)
Q Consensus 66 ~i~~~~v~~~y~~--g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~----~~G~I~i~g~~i~-~~ 138 (273)
.++++|++++|++ +++.+ |+|||+++++||++||+||||||||||+++|+|+.+ ++|+|.++|+++. ..
T Consensus 759 ~l~~~nl~~~~~~~~~~~~i----L~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVI----LNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSF 834 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEe----eeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhh
Confidence 4689999999864 23556 999999999999999999999999999999999975 5799999999885 45
Q ss_pred CccEEEEeccchhhhccCCccccccccc----------CCH----HHHHHHHHHhc---------c----cCCHHHHHHH
Q 024032 139 SHTITMYMEEHNVMRSLQSGFCVYDSRG----------FNY----NRVHEGLEELS---------S----WMSEGVHHNQ 191 (273)
Q Consensus 139 ~~~i~~v~q~~~~~~~~~~~~tv~en~~----------~~~----~~~~~~l~~~~---------~----~LSgGqkq~~ 191 (273)
++.++|++|++.+ ++.+||+||.. .+. +.++++++.++ . .||||||||.
T Consensus 835 ~~~i~yv~Q~~~~----~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl 910 (1394)
T TIGR00956 835 QRSIGYVQQQDLH----LPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRL 910 (1394)
T ss_pred hcceeeecccccC----CCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHH
Confidence 6789999998764 45669999832 122 23556666665 2 6999999987
Q ss_pred H---h-cCCCC-EEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc---------eeCCEEEEEeCC-eEeeecChh
Q 024032 192 R---C-LRSDD-CALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS---------NIAEIYKALKAG-DSKPLDATK 250 (273)
Q Consensus 192 r---~-l~~p~-iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv---------~~ad~i~vl~~G-~i~~~g~~~ 250 (273)
. + +.+|+ +|+|||||+|||+. +.+++++++ |+|||++ ..+|++++|++| ++++.|++.
T Consensus 911 ~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~-g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~ 989 (1394)
T TIGR00956 911 TIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADH-GQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLG 989 (1394)
T ss_pred HHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcc
Confidence 2 2 78997 99999999999999 445666554 8999998 247999999987 999999875
Q ss_pred h
Q 024032 251 R 251 (273)
Q Consensus 251 ~ 251 (273)
+
T Consensus 990 ~ 990 (1394)
T TIGR00956 990 E 990 (1394)
T ss_pred c
Confidence 4
No 340
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.97 E-value=1.1e-30 Score=281.55 Aligned_cols=205 Identities=14% Similarity=0.077 Sum_probs=158.0
Q ss_pred hhhhhccchhhhhhhhHHHHHHHhchhhhcc---CCCCceEEEEEEEEeecC----------------------------
Q 024032 31 ECVKLKLDLPNVSTLTPRLRVLREMERLALI---APDGLNELRHKFLSYRSG---------------------------- 79 (273)
Q Consensus 31 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~---~~~~~i~~~~v~~~y~~g---------------------------- 79 (273)
.++.....+.++..+..|+.+++..++.... .....++++|++|+|...
T Consensus 354 ~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (1490)
T TIGR01271 354 QFPGAIQTWYDSLGAITKIQDFLCKEEYKTLEYNLTTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSN 433 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCceEEecceEecCCccccccccccccccccccccccccccccc
Confidence 4555556667789999999999876543211 112358999999998421
Q ss_pred ----CeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEEEEeccchhhhc
Q 024032 80 ----DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRS 154 (273)
Q Consensus 80 ----~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~ 154 (273)
.++ +|+|+||+|++|++++|+||||||||||+++|+|+++ ++|+|.++| .++|++|++.+
T Consensus 434 ~s~~~~~----~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g--------~iayv~Q~~~l--- 498 (1490)
T TIGR01271 434 FSLYVTP----VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG--------RISFSPQTSWI--- 498 (1490)
T ss_pred cccccCc----ceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC--------EEEEEeCCCcc---
Confidence 112 4999999999999999999999999999999999999 999999988 48999999875
Q ss_pred cCCcccccccccC----CHHHHHHHHHHh--------------------cccCCHHHHHHH---Hh-cCCCCEEEEcCcC
Q 024032 155 LQSGFCVYDSRGF----NYNRVHEGLEEL--------------------SSWMSEGVHHNQ---RC-LRSDDCALMKNDA 206 (273)
Q Consensus 155 ~~~~~tv~en~~~----~~~~~~~~l~~~--------------------~~~LSgGqkq~~---r~-l~~p~iLlLDEPt 206 (273)
++.||+||..+ +.+...++++.+ +..||||||||. |+ +++|+++||||||
T Consensus 499 --~~~Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~ 576 (1490)
T TIGR01271 499 --MPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPF 576 (1490)
T ss_pred --CCccHHHHHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 34599999532 222222222211 157999999987 44 7999999999999
Q ss_pred CCCCHH--H-H----HHHHHhcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhcc
Q 024032 207 EIDDLK--S-S----PKYVLRRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFS 254 (273)
Q Consensus 207 s~LD~~--~-~----l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~ 254 (273)
++||+. . . +..+. + |+|+|++ ..||+|++|++|+++..|+++++..
T Consensus 577 saLD~~~~~~i~~~~l~~~~-~-~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l~~ 636 (1490)
T TIGR01271 577 THLDVVTEKEIFESCLCKLM-S-NKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQA 636 (1490)
T ss_pred ccCCHHHHHHHHHHHHHHHh-c-CCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999 2 2 22333 2 8899999 4489999999999999999999875
No 341
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.97 E-value=1.5e-31 Score=266.91 Aligned_cols=165 Identities=16% Similarity=0.130 Sum_probs=135.6
Q ss_pred CeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-C---ccEEEECCeeCC--CCCccEEEEeccchhhh
Q 024032 80 DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R---SGLVLFAQTSSG--NSSHTITMYMEEHNVMR 153 (273)
Q Consensus 80 ~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~---~G~I~i~g~~i~--~~~~~i~~v~q~~~~~~ 153 (273)
++++ |+|+|+++++||++||+||||||||||+++|+|..+ . +|+|.++|.++. ..++.++|++|++.+
T Consensus 37 ~~~i----L~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~-- 110 (617)
T TIGR00955 37 RKHL----LKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLF-- 110 (617)
T ss_pred cccc----ccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeecccccc--
Confidence 4556 999999999999999999999999999999999876 4 799999999875 356789999999875
Q ss_pred ccCCccccccccc----------CC----HHHHHHHHHHhc---------c------cCCHHHHHHH---Hh-cCCCCEE
Q 024032 154 SLQSGFCVYDSRG----------FN----YNRVHEGLEELS---------S------WMSEGVHHNQ---RC-LRSDDCA 200 (273)
Q Consensus 154 ~~~~~~tv~en~~----------~~----~~~~~~~l~~~~---------~------~LSgGqkq~~---r~-l~~p~iL 200 (273)
+..+||+||.. .+ .+.+++.++.++ . .||||||||. ++ +.+|+++
T Consensus 111 --~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vl 188 (617)
T TIGR00955 111 --IPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLL 188 (617)
T ss_pred --CccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEE
Confidence 44569999832 11 123566666655 2 4999999987 22 7999999
Q ss_pred EEcCcCCCCCHH------HHHHHHHhcCCcEEEEc---------eeCCEEEEEeCCeEeeecChhhhc
Q 024032 201 LMKNDAEIDDLK------SSPKYVLRRVDFAMVVS---------NIAEIYKALKAGDSKPLDATKRLF 253 (273)
Q Consensus 201 lLDEPts~LD~~------~~l~~l~~~~g~tiiiv---------~~ad~i~vl~~G~i~~~g~~~~l~ 253 (273)
+|||||+|||+. +.+++++++ |+|||++ ..+|++++|++|++++.|+++++.
T Consensus 189 llDEPtsgLD~~~~~~l~~~L~~l~~~-g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~ 255 (617)
T TIGR00955 189 FCDEPTSGLDSFMAYSVVQVLKGLAQK-GKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAV 255 (617)
T ss_pred EeeCCCcchhHHHHHHHHHHHHHHHhC-CCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHH
Confidence 999999999999 445666655 8999888 457999999999999999998874
No 342
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.97 E-value=4.1e-31 Score=231.96 Aligned_cols=178 Identities=18% Similarity=0.163 Sum_probs=137.7
Q ss_pred CCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCC-----
Q 024032 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSG----- 136 (273)
Q Consensus 63 ~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~----- 136 (273)
.+.+|+++|+++.| +++++ |+++|++|++||.++|+||||||||||+++++|.++ ++|.+.+.|+...
T Consensus 28 ~~~li~l~~v~v~r--~gk~i----L~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~ 101 (257)
T COG1119 28 NEPLIELKNVSVRR--NGKKI----LGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETI 101 (257)
T ss_pred CcceEEecceEEEE--CCEee----ccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcch
Confidence 34579999999998 56888 999999999999999999999999999999999999 9999999998664
Q ss_pred -CCCccEEEEeccchhhhccCCccccccc------------c-cCC---HHHHHHHHHHhc---------ccCCHHHHHH
Q 024032 137 -NSSHTITMYMEEHNVMRSLQSGFCVYDS------------R-GFN---YNRVHEGLEELS---------SWMSEGVHHN 190 (273)
Q Consensus 137 -~~~~~i~~v~q~~~~~~~~~~~~tv~en------------~-~~~---~~~~~~~l~~~~---------~~LSgGqkq~ 190 (273)
++|++||+|...... .+....+++|. . ..+ .+++...++.++ ..||-|||||
T Consensus 102 ~elrk~IG~vS~~L~~--~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rr 179 (257)
T COG1119 102 FELRKRIGLVSSELHE--RFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRR 179 (257)
T ss_pred HHHHHHhCccCHHHHh--hcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHH
Confidence 478899998765332 11223345543 1 122 334556667666 7899999997
Q ss_pred H---Hh-cCCCCEEEEcCcCCCCCHHH------HHHHHHh-cCCcEEEEce--------eCCEEEEEeCCeEeeecC
Q 024032 191 Q---RC-LRSDDCALMKNDAEIDDLKS------SPKYVLR-RVDFAMVVSN--------IAEIYKALKAGDSKPLDA 248 (273)
Q Consensus 191 ~---r~-l~~p~iLlLDEPts~LD~~~------~l~~l~~-~~g~tiiiv~--------~ad~i~vl~~G~i~~~g~ 248 (273)
. |+ +++|++||||||++|||... .+.++.. ..+.++|+|. ..++++.+++|+++.+|.
T Consensus 180 vLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 180 VLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred HHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeeccc
Confidence 6 55 89999999999999999992 2344432 2356788882 248899999999998874
No 343
>PRK13409 putative ATPase RIL; Provisional
Probab=99.97 E-value=6.3e-31 Score=260.99 Aligned_cols=164 Identities=18% Similarity=0.140 Sum_probs=132.5
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEE
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~ 143 (273)
..++++|++++|. + .. |+++||+|++||++||+||||||||||+++|+|+++ ++|+|.++ ..++
T Consensus 339 ~~l~~~~ls~~~~--~-~~----l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~--------~~i~ 403 (590)
T PRK13409 339 TLVEYPDLTKKLG--D-FS----LEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE--------LKIS 403 (590)
T ss_pred eEEEEcceEEEEC--C-EE----EEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe--------eeEE
Confidence 4689999999884 2 24 999999999999999999999999999999999999 99999985 2589
Q ss_pred EEeccchhhhccCCcccccccccC------CHHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCCEEEEcC
Q 024032 144 MYMEEHNVMRSLQSGFCVYDSRGF------NYNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDDCALMKN 204 (273)
Q Consensus 144 ~v~q~~~~~~~~~~~~tv~en~~~------~~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~iLlLDE 204 (273)
|++|+... .+.+||.+|... ....+.++++.++ .+||||||||. ++ +++|++|||||
T Consensus 404 y~~Q~~~~----~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDE 479 (590)
T PRK13409 404 YKPQYIKP----DYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDE 479 (590)
T ss_pred EecccccC----CCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 99998764 456688887432 1223456666665 78999999987 33 78999999999
Q ss_pred cCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecC
Q 024032 205 DAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDA 248 (273)
Q Consensus 205 Pts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~ 248 (273)
||++||+. +.+++++++.|.|||++ .+||++++|++ ++...|+
T Consensus 480 Pt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~ 536 (590)
T PRK13409 480 PSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGH 536 (590)
T ss_pred CccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeee
Confidence 99999999 34566655558899988 56899999965 7776665
No 344
>PLN03073 ABC transporter F family; Provisional
Probab=99.97 E-value=2.4e-30 Score=261.52 Aligned_cols=170 Identities=14% Similarity=0.174 Sum_probs=132.2
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEE
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~ 143 (273)
..++++|++++|+. +..+ |+++||+|++|++++|+||||||||||+|+|+|+++ ++|+|.+++. .+++
T Consensus 507 ~~L~~~~ls~~y~~-~~~i----l~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~------~~ig 575 (718)
T PLN03073 507 PIISFSDASFGYPG-GPLL----FKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAK------VRMA 575 (718)
T ss_pred ceEEEEeeEEEeCC-CCee----EeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCc------eeEE
Confidence 47999999999942 3456 999999999999999999999999999999999999 9999998652 4689
Q ss_pred EEeccchhhhccCCccccccc---------ccCCHHHHHHHHHHhc----------ccCCHHHHHHH---Hh-cCCCCEE
Q 024032 144 MYMEEHNVMRSLQSGFCVYDS---------RGFNYNRVHEGLEELS----------SWMSEGVHHNQ---RC-LRSDDCA 200 (273)
Q Consensus 144 ~v~q~~~~~~~~~~~~tv~en---------~~~~~~~~~~~l~~~~----------~~LSgGqkq~~---r~-l~~p~iL 200 (273)
|++|++.. .+ ++.++ .....+.+.++++.++ ..||||||||. ++ +.+|++|
T Consensus 576 yv~Q~~~~--~l----~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lL 649 (718)
T PLN03073 576 VFSQHHVD--GL----DLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIL 649 (718)
T ss_pred EEeccccc--cC----CcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEE
Confidence 99987521 11 12111 1234556677777665 67999999987 33 7899999
Q ss_pred EEcCcCCCCCHH---HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEe-eecChhhh
Q 024032 201 LMKNDAEIDDLK---SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSK-PLDATKRL 252 (273)
Q Consensus 201 lLDEPts~LD~~---~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~-~~g~~~~l 252 (273)
||||||++||+. .+++.+.+. +.|||+| .+||++++|++|+++ ..|+..+.
T Consensus 650 LLDEPT~~LD~~s~~~l~~~L~~~-~gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 650 LLDEPSNHLDLDAVEALIQGLVLF-QGGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred EEcCCCCCCCHHHHHHHHHHHHHc-CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 999999999999 333444432 3488888 568999999999998 67776654
No 345
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=4e-31 Score=263.23 Aligned_cols=191 Identities=17% Similarity=0.165 Sum_probs=153.3
Q ss_pred ceEEEEEEEEeecCC---eeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc----CccEEEECCeeCC--
Q 024032 66 LNELRHKFLSYRSGD---FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS----RSGLVLFAQTSSG-- 136 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~---~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~----~~G~I~i~g~~i~-- 136 (273)
.+.+++++.+..... +++ |++||.++++||++||+|||||||||||++|+|... .+|+|.+||+...
T Consensus 25 ~~~~~~~~~~~~~~~~~~k~i----L~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~ 100 (613)
T KOG0061|consen 25 KLSFRNLTLSSKEKSKKTKTI----LKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSR 100 (613)
T ss_pred eeEEEEEEEEecCCCCcccee----eeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchh
Confidence 577888888776542 556 999999999999999999999999999999999874 5899999996543
Q ss_pred CCCccEEEEeccchhhhccCCcccccccc----------cCC----HHHHHHHHHHhc--------------ccCCHHHH
Q 024032 137 NSSHTITMYMEEHNVMRSLQSGFCVYDSR----------GFN----YNRVHEGLEELS--------------SWMSEGVH 188 (273)
Q Consensus 137 ~~~~~i~~v~q~~~~~~~~~~~~tv~en~----------~~~----~~~~~~~l~~~~--------------~~LSgGqk 188 (273)
..++..+||.|+..+ ...+||+|+. ..+ .+++++.+++++ ..+|||||
T Consensus 101 ~~~~~s~yV~QdD~l----~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGEr 176 (613)
T KOG0061|consen 101 SFRKISGYVQQDDVL----LPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGER 176 (613)
T ss_pred hhhheeEEEcccccc----cccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchh
Confidence 467888999998886 4455999972 112 344666666666 35999999
Q ss_pred HHHHh----cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc---------eeCCEEEEEeCCeEeeecCh
Q 024032 189 HNQRC----LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS---------NIAEIYKALKAGDSKPLDAT 249 (273)
Q Consensus 189 q~~r~----l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv---------~~ad~i~vl~~G~i~~~g~~ 249 (273)
+|... +++|.+|+|||||+|||.. +.+++++++ |+|||++ +..|++++|.+|+++..|++
T Consensus 177 kRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~ 255 (613)
T KOG0061|consen 177 KRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSP 255 (613)
T ss_pred hHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCH
Confidence 98732 8999999999999999999 557888888 9999999 55799999999999999999
Q ss_pred hhhccChhhHHHhCCceEE
Q 024032 250 KRLFSAPGLRKCSKISFCI 268 (273)
Q Consensus 250 ~~l~~~~~l~~~~~~~~~~ 268 (273)
+++.. .-...|.|++-
T Consensus 256 ~~~~~---ff~~~G~~~P~ 271 (613)
T KOG0061|consen 256 RELLE---FFSSLGFPCPE 271 (613)
T ss_pred HHHHH---HHHhCCCCCCC
Confidence 87642 33444555443
No 346
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.97 E-value=1.5e-30 Score=227.76 Aligned_cols=153 Identities=12% Similarity=0.062 Sum_probs=113.5
Q ss_pred ceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEE-ECCeeCCCCCccEEEEeccchhhhccCCccccccc
Q 024032 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVL-FAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDS 164 (273)
Q Consensus 87 ~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~-i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en 164 (273)
+|+++||+|++|++++|+||||||||||+++|+|+++ ++|+|. ++|..+. +.+++.+ +..+|+.||
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~--------~~~~~~l----~~~ltv~en 69 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALP--------LGANSFI----LPGLTGEEN 69 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceec--------ccccccc----CCcCcHHHH
Confidence 3999999999999999999999999999999999998 999997 7765431 1122222 344578877
Q ss_pred cc-------CCHHHHHHHH-HHh---------cccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHHHH------HHH
Q 024032 165 RG-------FNYNRVHEGL-EEL---------SSWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLKSS------PKY 217 (273)
Q Consensus 165 ~~-------~~~~~~~~~l-~~~---------~~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~~~------l~~ 217 (273)
.. ...+++.+.+ +.. ...||+|||||. ++ +.+|+++||||||+++|+... +.+
T Consensus 70 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~ 149 (213)
T PRK15177 70 ARMMASLYGLDGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALAC 149 (213)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHH
Confidence 32 2222222222 111 168999999986 33 789999999999999999822 222
Q ss_pred HHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhc
Q 024032 218 VLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLF 253 (273)
Q Consensus 218 l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~ 253 (273)
..+ +.|+|++ .+||++++|++|++++.++.++..
T Consensus 150 ~~~--~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 191 (213)
T PRK15177 150 QLQ--QKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQAT 191 (213)
T ss_pred Hhh--CCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHH
Confidence 222 4677777 568999999999999999888763
No 347
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.97 E-value=2.2e-30 Score=220.90 Aligned_cols=135 Identities=13% Similarity=0.131 Sum_probs=108.1
Q ss_pred EEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEEEEecc
Q 024032 70 RHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEE 148 (273)
Q Consensus 70 ~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~~v~q~ 148 (273)
.|++++| +++.+ ++++ |++++||+++|+||||||||||+|+|+|+++ ++|+|.++|.+ +++++|+
T Consensus 4 ~~l~~~~--~~~~~----l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~-------i~~~~q~ 69 (177)
T cd03222 4 PDCVKRY--GVFFL----LVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT-------PVYKPQY 69 (177)
T ss_pred CCeEEEE--CCEEE----EccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE-------EEEEccc
Confidence 4678887 45666 8884 9999999999999999999999999999999 99999999864 5666553
Q ss_pred chhhhccCCcccccccccCCHHHHHHHHHHhcccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHH
Q 024032 149 HNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYV 218 (273)
Q Consensus 149 ~~~~~~~~~~~tv~en~~~~~~~~~~~l~~~~~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l 218 (273)
.. ||||||||. |+ +.+|+++||||||++||+. +.+.++
T Consensus 70 ~~--------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~ 117 (177)
T cd03222 70 ID--------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRL 117 (177)
T ss_pred CC--------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 21 999999986 33 7899999999999999999 234555
Q ss_pred HhcCCcEEEEc--------eeCCEEEEEeCCeEeee--cChh
Q 024032 219 LRRVDFAMVVS--------NIAEIYKALKAGDSKPL--DATK 250 (273)
Q Consensus 219 ~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~--g~~~ 250 (273)
.++.+.|||++ .+||++++|+++-.+.. |.|.
T Consensus 118 ~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~~~~~~~~~ 159 (177)
T cd03222 118 SEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGVYGIASQPK 159 (177)
T ss_pred HHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCccceeccCCc
Confidence 44424888888 46899999998765533 4444
No 348
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.97 E-value=3.6e-31 Score=237.85 Aligned_cols=166 Identities=14% Similarity=0.145 Sum_probs=123.2
Q ss_pred EEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEE-----------ECCeeCCCC
Q 024032 71 HKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVL-----------FAQTSSGNS 138 (273)
Q Consensus 71 ~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~-----------i~g~~i~~~ 138 (273)
+++++|+. +..+ |+++|+ +++|++++|+||||||||||+|+|+|+++ ++|+|+ ++|+++...
T Consensus 5 ~~~~~y~~-~~~~----l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~ 78 (255)
T cd03236 5 EPVHRYGP-NSFK----LHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNY 78 (255)
T ss_pred CcceeecC-cchh----hhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhh
Confidence 57788842 2235 999995 99999999999999999999999999999 999996 778876431
Q ss_pred ----C---ccEEEEeccchhhhccCCcccccccccC--CHHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCC
Q 024032 139 ----S---HTITMYMEEHNVMRSLQSGFCVYDSRGF--NYNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRS 196 (273)
Q Consensus 139 ----~---~~i~~v~q~~~~~~~~~~~~tv~en~~~--~~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~ 196 (273)
+ ..+++++|....++. .+..++.+|... ..+.+.++++.++ ..||+|||||. |+ +.+
T Consensus 79 ~~~~~~~~~~i~~~~~~~~~~~~-~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~ 157 (255)
T cd03236 79 FTKLLEGDVKVIVKPQYVDLIPK-AVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARD 157 (255)
T ss_pred hHHhhhcccceeeecchhccCch-HHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhC
Confidence 1 136777787665432 233344444211 1244566666665 67999999986 33 789
Q ss_pred CCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEee
Q 024032 197 DDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKP 245 (273)
Q Consensus 197 p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~ 245 (273)
|+++||||||++||+. +.++++.++ +.|||++ .+||++++|+ |++.+
T Consensus 158 p~illlDEPts~LD~~~~~~l~~~l~~l~~~-~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~~ 218 (255)
T cd03236 158 ADFYFFDEPSSYLDIKQRLNAARLIRELAED-DNYVLVVEHDLAVLDYLSDYIHCLY-GEPGA 218 (255)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHHhCCEEEEEC-CCCCc
Confidence 9999999999999999 345666554 8899988 4689999995 55654
No 349
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.97 E-value=2.6e-30 Score=258.93 Aligned_cols=182 Identities=17% Similarity=0.198 Sum_probs=125.9
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeC-C-----CC
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSS-G-----NS 138 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i-~-----~~ 138 (273)
+++++|++++|. ++++ |+++||+|++|+++||+||||||||||+|+|+|+++ ++|+|.++|... . ..
T Consensus 3 ~l~i~~ls~~~~--~~~i----l~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~ 76 (635)
T PRK11147 3 LISIHGAWLSFS--DAPL----LDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPP 76 (635)
T ss_pred EEEEeeEEEEeC--Ccee----EeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCC
Confidence 589999999994 4567 999999999999999999999999999999999998 999999987321 0 00
Q ss_pred CccEEEEeccch-----h------hhcc---CCcccccccc--------------c-CCHHHHHHHHHHhc-------cc
Q 024032 139 SHTITMYMEEHN-----V------MRSL---QSGFCVYDSR--------------G-FNYNRVHEGLEELS-------SW 182 (273)
Q Consensus 139 ~~~i~~v~q~~~-----~------~~~~---~~~~tv~en~--------------~-~~~~~~~~~l~~~~-------~~ 182 (273)
+..+++++|... . +..+ ....+..+|. . ....++.++++.++ ..
T Consensus 77 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~ 156 (635)
T PRK11147 77 RNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPDAALSS 156 (635)
T ss_pred CCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCCCCchhh
Confidence 111122222110 0 0000 0000001110 0 01234566666665 68
Q ss_pred CCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH--HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEee-ec
Q 024032 183 MSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK--SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKP-LD 247 (273)
Q Consensus 183 LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~--~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~-~g 247 (273)
||||||||+ ++ +.+|++|||||||++||+. ..+..+.++.+.|||+| .+||+|++|++|+++. .|
T Consensus 157 LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvlivsHd~~~l~~~~d~i~~L~~G~i~~~~g 236 (635)
T PRK11147 157 LSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVDLDRGKLVSYPG 236 (635)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEecC
Confidence 999999987 33 7899999999999999999 33444433445688888 5689999999999974 57
Q ss_pred Chhhhc
Q 024032 248 ATKRLF 253 (273)
Q Consensus 248 ~~~~l~ 253 (273)
+..+++
T Consensus 237 ~~~~~~ 242 (635)
T PRK11147 237 NYDQYL 242 (635)
T ss_pred CHHHHH
Confidence 766554
No 350
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=1.1e-29 Score=211.45 Aligned_cols=132 Identities=19% Similarity=0.229 Sum_probs=109.5
Q ss_pred EEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccE
Q 024032 69 LRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTI 142 (273)
Q Consensus 69 ~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i 142 (273)
++++++.|. +..+ |+++||++++|++++|+||||||||||+++|+|+++ ++|+|+++|.++.. .++.+
T Consensus 2 ~~~~~~~~~--~~~~----l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i 75 (157)
T cd00267 2 IENLSFRYG--GRTA----LDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRI 75 (157)
T ss_pred eEEEEEEeC--Ceee----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhce
Confidence 678889884 3456 999999999999999999999999999999999999 99999999987653 22445
Q ss_pred EEEeccchhhhccCCcccccccccCCHHHHHHHHHHhcccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------
Q 024032 143 TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------ 212 (273)
Q Consensus 143 ~~v~q~~~~~~~~~~~~tv~en~~~~~~~~~~~l~~~~~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------ 212 (273)
++++| ||+||+||. ++ +.+|++++|||||++||+.
T Consensus 76 ~~~~q-----------------------------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~ 120 (157)
T cd00267 76 GYVPQ-----------------------------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLL 120 (157)
T ss_pred EEEee-----------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHH
Confidence 55555 999999986 33 7899999999999999999
Q ss_pred HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCe
Q 024032 213 SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGD 242 (273)
Q Consensus 213 ~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~ 242 (273)
+.+.++.+. +.|++++ ..||++++|++|+
T Consensus 121 ~~l~~~~~~-~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 121 ELLRELAEE-GRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred HHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 334445444 6888888 4579999999875
No 351
>PLN03140 ABC transporter G family member; Provisional
Probab=99.97 E-value=9.9e-30 Score=272.52 Aligned_cols=177 Identities=12% Similarity=0.095 Sum_probs=141.7
Q ss_pred ceEEEEEEEEeec-----------CCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc---CccEEEEC
Q 024032 66 LNELRHKFLSYRS-----------GDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS---RSGLVLFA 131 (273)
Q Consensus 66 ~i~~~~v~~~y~~-----------g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~---~~G~I~i~ 131 (273)
.+.++|+++++.. +++.+ |+|+|+++++|+++||+|||||||||||++|+|..+ .+|+|.++
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~i----L~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~in 942 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQL----LREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRIS 942 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceE----eeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEEC
Confidence 5889999998753 22345 999999999999999999999999999999999865 58999999
Q ss_pred CeeCCC--CCccEEEEeccchhhhccCCcccccccccC----------CHH----HHHHHHHHhc--------------c
Q 024032 132 QTSSGN--SSHTITMYMEEHNVMRSLQSGFCVYDSRGF----------NYN----RVHEGLEELS--------------S 181 (273)
Q Consensus 132 g~~i~~--~~~~i~~v~q~~~~~~~~~~~~tv~en~~~----------~~~----~~~~~l~~~~--------------~ 181 (273)
|.+... .++.++|++|+..+ +..+||+||..+ +.+ .+++.++.++ .
T Consensus 943 G~~~~~~~~~~~igyv~Q~d~~----~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~ 1018 (1470)
T PLN03140 943 GFPKKQETFARISGYCEQNDIH----SPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVT 1018 (1470)
T ss_pred CccCChHHhhhheEEEcccccc----CCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCC
Confidence 988753 45678999998775 445699998321 211 2556666655 2
Q ss_pred cCCHHHHHHHH---h-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc---------eeCCEEEEEeC-C
Q 024032 182 WMSEGVHHNQR---C-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS---------NIAEIYKALKA-G 241 (273)
Q Consensus 182 ~LSgGqkq~~r---~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv---------~~ad~i~vl~~-G 241 (273)
.||||||||.. + +.+|++|+|||||+|||+. +.+++++++ |.|||++ ..+|++++|++ |
T Consensus 1019 ~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~-g~tVI~t~Hq~~~~i~~~~D~vllL~~gG 1097 (1470)
T PLN03140 1019 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGG 1097 (1470)
T ss_pred CcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCHHHHHhCCEEEEEcCCC
Confidence 69999999872 2 7999999999999999999 446667655 8999998 35799999986 8
Q ss_pred eEeeecChhh
Q 024032 242 DSKPLDATKR 251 (273)
Q Consensus 242 ~i~~~g~~~~ 251 (273)
+++..|++.+
T Consensus 1098 ~~v~~G~~~~ 1107 (1470)
T PLN03140 1098 QVIYSGPLGR 1107 (1470)
T ss_pred EEEEECCccc
Confidence 9999998653
No 352
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=1.5e-29 Score=265.01 Aligned_cols=205 Identities=18% Similarity=0.182 Sum_probs=169.3
Q ss_pred hhhhccchhhhhhhhHHHHHHHhchhhh---c-----cCCCCceEEEEEEEEeecCC-eeeeccceeeeeeEEcCCcEEE
Q 024032 32 CVKLKLDLPNVSTLTPRLRVLREMERLA---L-----IAPDGLNELRHKFLSYRSGD-FWIPIGGIQKGGMDIPPVITIL 102 (273)
Q Consensus 32 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~---~-----~~~~~~i~~~~v~~~y~~g~-~~v~~~~L~~is~~i~~Ge~~a 102 (273)
++.....+.++..+.+|+...+..++.. . ...+..+++++.++++...+ .+. |+||||+|++|+.+|
T Consensus 476 ~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~~~~~~~~~~i~i~~~sfsW~~~~~~~t----L~dIn~~i~~G~lva 551 (1381)
T KOG0054|consen 476 LPSVISQLVQAKVSLKRLKEFLLSEELDPDSVERSPDEAGENAIEIKNGSFSWDSESPEPT----LKDINFEIKKGQLVA 551 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcccCccccccCCCCCCCceEEEeeeeEecCCCCCccc----ccceeEEecCCCEEE
Confidence 4445566678899999999998866532 1 12245799999999987532 234 999999999999999
Q ss_pred EEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEEEEeccchhhhccCCcccccccc----cCCHHHHHHHHH
Q 024032 103 LMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSR----GFNYNRVHEGLE 177 (273)
Q Consensus 103 ivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en~----~~~~~~~~~~l~ 177 (273)
|+||-|||||||+.+|.|.++ .+|++.++|. ++|++|++.+ ++.||+||. .+++++.+++++
T Consensus 552 VvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs--------iaYv~Q~pWI-----~ngTvreNILFG~~~d~~rY~~Vi~ 618 (1381)
T KOG0054|consen 552 VVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS--------VAYVPQQPWI-----QNGTVRENILFGSPYDEERYDKVIK 618 (1381)
T ss_pred EECCCCCCHHHHHHHHhcCcccccceEEEcCe--------EEEeccccHh-----hCCcHHHhhhcCccccHHHHHHHHH
Confidence 999999999999999999999 9999999886 7999999985 456999994 456777888877
Q ss_pred Hhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH---HH----HHHHHhcCCcEE
Q 024032 178 ELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK---SS----PKYVLRRVDFAM 226 (273)
Q Consensus 178 ~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~---~~----l~~l~~~~g~ti 226 (273)
... .+||||||||. || .++++|+|||.|+|++|.. +. ++.+.+ ++|+
T Consensus 619 aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~--~KT~ 696 (1381)
T KOG0054|consen 619 ACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLR--GKTV 696 (1381)
T ss_pred HccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhc--CCEE
Confidence 665 57999999986 55 7999999999999999999 33 333434 7899
Q ss_pred EEc-------eeCCEEEEEeCCeEeeecChhhhccC
Q 024032 227 VVS-------NIAEIYKALKAGDSKPLDATKRLFSA 255 (273)
Q Consensus 227 iiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~ 255 (273)
|+| .+||.|++|++|+|++.|+.+|+.+.
T Consensus 697 ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~~ 732 (1381)
T KOG0054|consen 697 ILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLKS 732 (1381)
T ss_pred EEEeCchhhhhhCCEEEEecCCeEecccCHHHHHhc
Confidence 999 66999999999999999999999853
No 353
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=1.7e-29 Score=221.74 Aligned_cols=157 Identities=14% Similarity=0.189 Sum_probs=123.8
Q ss_pred cceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEEEEeccchhhhccCCccccccc
Q 024032 86 GGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDS 164 (273)
Q Consensus 86 ~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en 164 (273)
.+|+||||++++||.+||||+||||||||+|+|+|.++ ++|+|.++|+-..-+.-..| +...+|.+||
T Consensus 41 ~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~G-----------f~pelTGreN 109 (249)
T COG1134 41 WALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAG-----------FDPELTGREN 109 (249)
T ss_pred EEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccC-----------CCcccchHHH
Confidence 45999999999999999999999999999999999999 99999999974321111111 1233478887
Q ss_pred -------ccCCHHHHHHHHHHhc-------------ccCCHHHHHHHHh----cCCCCEEEEcCcCCCCCHH------HH
Q 024032 165 -------RGFNYNRVHEGLEELS-------------SWMSEGVHHNQRC----LRSDDCALMKNDAEIDDLK------SS 214 (273)
Q Consensus 165 -------~~~~~~~~~~~l~~~~-------------~~LSgGqkq~~r~----l~~p~iLlLDEPts~LD~~------~~ 214 (273)
.++..+++++..+.+. .++|-||+-|... ..+|+|||+||-.+.-|+. +.
T Consensus 110 i~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~r 189 (249)
T COG1134 110 IYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLER 189 (249)
T ss_pred HHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHH
Confidence 3455555555444332 7899999766532 5799999999999999999 44
Q ss_pred HHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhcc
Q 024032 215 PKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFS 254 (273)
Q Consensus 215 l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~ 254 (273)
+.++.++ +.|||+| ++||++++|++|++...|+++++..
T Consensus 190 l~e~~~~-~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~ 236 (249)
T COG1134 190 LNELVEK-NKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIP 236 (249)
T ss_pred HHHHHHc-CCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHH
Confidence 6666555 7888888 6799999999999999999999864
No 354
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=1.7e-29 Score=215.32 Aligned_cols=141 Identities=18% Similarity=0.182 Sum_probs=101.7
Q ss_pred ceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeCCCCCccEEEEeccchhhhccCCccccccccc
Q 024032 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRG 166 (273)
Q Consensus 87 ~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en~~ 166 (273)
+|+++||++++|++++|+||||||||||||++.+ ++|++.+++......+..+++++|. ..+ +..+
T Consensus 10 ~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~---~~G~v~~~~~~~~~~~~~~~~~~q~-~~l----------~~~~ 75 (176)
T cd03238 10 NLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY---ASGKARLISFLPKFSRNKLIFIDQL-QFL----------IDVG 75 (176)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh---cCCcEEECCcccccccccEEEEhHH-HHH----------HHcC
Confidence 4999999999999999999999999999999854 6899999877322233446776651 111 1111
Q ss_pred CCHHHHHHHHHHhcccCCHHHHHHH---Hh-cCC--CCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-----
Q 024032 167 FNYNRVHEGLEELSSWMSEGVHHNQ---RC-LRS--DDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS----- 229 (273)
Q Consensus 167 ~~~~~~~~~l~~~~~~LSgGqkq~~---r~-l~~--p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv----- 229 (273)
+... .++.-..+||+|||||. ++ +.+ |+++||||||++||+. +.++++.+ .|.|||++
T Consensus 76 L~~~----~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tvIivSH~~~ 150 (176)
T cd03238 76 LGYL----TLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLID-LGNTVILIEHNLD 150 (176)
T ss_pred CCcc----ccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHH
Confidence 1100 01222367999999986 33 788 9999999999999999 33455544 48999999
Q ss_pred --eeCCEEEEEeCCeEeee
Q 024032 230 --NIAEIYKALKAGDSKPL 246 (273)
Q Consensus 230 --~~ad~i~vl~~G~i~~~ 246 (273)
..||++++|++|.....
T Consensus 151 ~~~~~d~i~~l~~g~~~~~ 169 (176)
T cd03238 151 VLSSADWIIDFGPGSGKSG 169 (176)
T ss_pred HHHhCCEEEEECCCCCCCC
Confidence 45899999977655433
No 355
>PTZ00243 ABC transporter; Provisional
Probab=99.96 E-value=3.6e-29 Score=270.31 Aligned_cols=157 Identities=17% Similarity=0.197 Sum_probs=124.6
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEEEEeccchhhhccCCccccccccc
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRG 166 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en~~ 166 (273)
|+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.+. +.++|++|++.+ +..|++||..
T Consensus 676 L~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~--------~~i~yv~Q~~~l-----~~~Tv~enI~ 742 (1560)
T PTZ00243 676 LRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE--------RSIAYVPQQAWI-----MNATVRGNIL 742 (1560)
T ss_pred EeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC--------CeEEEEeCCCcc-----CCCcHHHHHH
Confidence 999999999999999999999999999999999999 99999863 468999999874 3569999953
Q ss_pred C----CHHHHHHHHH---------Hh-----------cccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH--H-HH
Q 024032 167 F----NYNRVHEGLE---------EL-----------SSWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK--S-SP 215 (273)
Q Consensus 167 ~----~~~~~~~~l~---------~~-----------~~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~--~-~l 215 (273)
+ +.+.+.++++ .+ +..||||||||. |+ +.+|+++||||||++||+. + .+
T Consensus 743 ~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~ 822 (1560)
T PTZ00243 743 FFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVV 822 (1560)
T ss_pred cCChhhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHH
Confidence 3 2222222222 22 167999999987 44 7999999999999999997 2 22
Q ss_pred HHH--HhcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccChh
Q 024032 216 KYV--LRRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSAPG 257 (273)
Q Consensus 216 ~~l--~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~~ 257 (273)
+.+ ....|+|+|++ ..||+|++|++|++++.|+++++++.+.
T Consensus 823 ~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~~G~~~~l~~~~~ 873 (1560)
T PTZ00243 823 EECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRVEFSGSSADFMRTSL 873 (1560)
T ss_pred HHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEecCHHHHHhChH
Confidence 221 11127899888 4589999999999999999999876543
No 356
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.96 E-value=1.1e-30 Score=219.18 Aligned_cols=189 Identities=19% Similarity=0.189 Sum_probs=151.2
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeCCC-----CCc
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGN-----SSH 140 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i~~-----~~~ 140 (273)
++++++|..+-+ |-.+|.++..||++-+|||||||||||+..++|+++-+|+|.++|.++.. +.+
T Consensus 3 l~qln~v~~~tR----------L~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~sGsi~~~G~~l~~~~~~eLAr 72 (248)
T COG4138 3 LMQLNDVAESTR----------LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGSGSIQFAGQPLEAWSATELAR 72 (248)
T ss_pred eeeecccccccc----------ccccccccccceEEEEECCCCccHHHHHHHHhCCCCCCceEEECCcchhHHhHhHHHH
Confidence 466777766421 78889999999999999999999999999999999999999999999853 556
Q ss_pred cEEEEeccchhhhccCCcccccccccC--CHHH----HHHHHHHhc---------ccCCHHHHHHHHh----c-----CC
Q 024032 141 TITMYMEEHNVMRSLQSGFCVYDSRGF--NYNR----VHEGLEELS---------SWMSEGVHHNQRC----L-----RS 196 (273)
Q Consensus 141 ~i~~v~q~~~~~~~~~~~~tv~en~~~--~~~~----~~~~l~~~~---------~~LSgGqkq~~r~----l-----~~ 196 (273)
+.+|..|+... .|.+.|+.+..+ +... +.++...++ ++|||||-||+|+ + .|
T Consensus 73 hRAYLsQqq~p----~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~N 148 (248)
T COG4138 73 HRAYLSQQQTP----PFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDAN 148 (248)
T ss_pred HHHHHhhccCC----cchhhhhhhhhhcCchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCC
Confidence 66788777654 455677766322 2222 233333332 7899999998865 1 24
Q ss_pred C--CEEEEcCcCCCCCHHH------HHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChhhHH
Q 024032 197 D--DCALMKNDAEIDDLKS------SPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPGLRK 260 (273)
Q Consensus 197 p--~iLlLDEPts~LD~~~------~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~l~~ 260 (273)
| ++||+|||.++||..+ ++.+++++ |.+|||+ ++||++++++.|++...|..+|+++.+-+..
T Consensus 149 P~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~-G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt~~vL~q 227 (248)
T COG4138 149 PAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQ-GLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTPPVLAQ 227 (248)
T ss_pred ccceeEEecCCCcchhHHHHHHHHHHHHHHHhC-CcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcChHHHHH
Confidence 4 6999999999999993 35677877 9999999 6789999999999999999999999999999
Q ss_pred HhCCceEEE
Q 024032 261 CSKISFCIL 269 (273)
Q Consensus 261 ~~~~~~~~~ 269 (273)
+|+..+...
T Consensus 228 ~fg~~frr~ 236 (248)
T COG4138 228 AYGMNFRRL 236 (248)
T ss_pred HhccceEEE
Confidence 999987654
No 357
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.96 E-value=1.4e-29 Score=271.34 Aligned_cols=162 Identities=14% Similarity=0.084 Sum_probs=131.2
Q ss_pred ceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCc----c-CccEEEECCeeCCC----CCccEEEEeccchhhhccCC
Q 024032 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVL----S-RSGLVLFAQTSSGN----SSHTITMYMEEHNVMRSLQS 157 (273)
Q Consensus 87 ~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~----~-~~G~I~i~g~~i~~----~~~~i~~v~q~~~~~~~~~~ 157 (273)
+|+|+|+++++||+++|+||||||||||||+|+|+. . .+|+|.++|+++.+ .++.+++++|+..+ +.
T Consensus 76 iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~----~~ 151 (1394)
T TIGR00956 76 ILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVH----FP 151 (1394)
T ss_pred eeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEecccccc----CC
Confidence 399999999999999999999999999999999985 4 79999999998742 45569999998775 44
Q ss_pred ccccccccc--------------CCHHH-----HHHHHHHhc--------------ccCCHHHHHHHH---h-cCCCCEE
Q 024032 158 GFCVYDSRG--------------FNYNR-----VHEGLEELS--------------SWMSEGVHHNQR---C-LRSDDCA 200 (273)
Q Consensus 158 ~~tv~en~~--------------~~~~~-----~~~~l~~~~--------------~~LSgGqkq~~r---~-l~~p~iL 200 (273)
.+||+|+.. ...++ ++++++.++ ..||||||||.. + +.+|+++
T Consensus 152 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vl 231 (1394)
T TIGR00956 152 HLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQ 231 (1394)
T ss_pred CCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEE
Confidence 558988732 11221 233566555 249999999872 2 7999999
Q ss_pred EEcCcCCCCCHH------HHHHHHHhcCCcEEEEc---------eeCCEEEEEeCCeEeeecChhhh
Q 024032 201 LMKNDAEIDDLK------SSPKYVLRRVDFAMVVS---------NIAEIYKALKAGDSKPLDATKRL 252 (273)
Q Consensus 201 lLDEPts~LD~~------~~l~~l~~~~g~tiiiv---------~~ad~i~vl~~G~i~~~g~~~~l 252 (273)
+|||||+|||+. +.+++++++.|.|||++ +++|++++|++|+++..|+++++
T Consensus 232 llDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~ 298 (1394)
T TIGR00956 232 CWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKA 298 (1394)
T ss_pred EEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHH
Confidence 999999999999 44666765558898888 45799999999999999999876
No 358
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=2.8e-29 Score=210.77 Aligned_cols=186 Identities=18% Similarity=0.203 Sum_probs=142.8
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCee---CC---
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTS---SG--- 136 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~---i~--- 136 (273)
..++++.++++.|..+ . ..++|||++.|||++||||.||||||||+++|++-+. +.|+|.+.-.+ ..
T Consensus 4 ~PLL~V~~lsk~Yg~~--~----gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~ 77 (258)
T COG4107 4 KPLLSVSGLSKLYGPG--K----GCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYT 77 (258)
T ss_pred CcceeehhhhhhhCCC--c----CccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhh
Confidence 3478999999999543 2 3899999999999999999999999999999999888 99999885432 11
Q ss_pred --C------CCccEEEEeccchhhhccCCccccccccc------------CCHHHHHHHHHHhc----------ccCCHH
Q 024032 137 --N------SSHTITMYMEEHNVMRSLQSGFCVYDSRG------------FNYNRVHEGLEELS----------SWMSEG 186 (273)
Q Consensus 137 --~------~~~~i~~v~q~~~~~~~~~~~~tv~en~~------------~~~~~~~~~l~~~~----------~~LSgG 186 (273)
+ .|-.-|+|.|+|..--. ...+.--|.+ .-.++..++++++. ..+|||
T Consensus 78 msEaeRR~L~RTeWG~VhQnP~DGLR--m~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGG 155 (258)
T COG4107 78 MSEAERRRLLRTEWGFVHQNPRDGLR--MQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGG 155 (258)
T ss_pred hchHHHHHHhhhccceeecCccccce--eeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchH
Confidence 1 23346888888764211 1112222321 12344556666665 789999
Q ss_pred HHHHHHh----cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecC
Q 024032 187 VHHNQRC----LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDA 248 (273)
Q Consensus 187 qkq~~r~----l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~ 248 (273)
|+||..+ ...|+++++||||.|||.. .+++.+.++.|.+++|+ -+++|.+||++|++++.|-
T Consensus 156 MqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~GL 235 (258)
T COG4107 156 MQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGL 235 (258)
T ss_pred HHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEecccc
Confidence 9998633 7899999999999999998 44677778889999888 3479999999999999999
Q ss_pred hhhhccChh
Q 024032 249 TKRLFSAPG 257 (273)
Q Consensus 249 ~~~l~~~~~ 257 (273)
++.++.+|.
T Consensus 236 TDrvLDDP~ 244 (258)
T COG4107 236 TDRVLDDPH 244 (258)
T ss_pred ccccccCCC
Confidence 999987764
No 359
>PLN03140 ABC transporter G family member; Provisional
Probab=99.96 E-value=1.3e-29 Score=271.50 Aligned_cols=163 Identities=15% Similarity=0.144 Sum_probs=132.4
Q ss_pred ceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-C---ccEEEECCeeCCC--CCccEEEEeccchhhhccCCccc
Q 024032 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R---SGLVLFAQTSSGN--SSHTITMYMEEHNVMRSLQSGFC 160 (273)
Q Consensus 87 ~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~---~G~I~i~g~~i~~--~~~~i~~v~q~~~~~~~~~~~~t 160 (273)
+|+|+|+.|++|++++|+||||||||||||+|+|+++ + +|+|.++|+++.+ .++.++|++|+..+ +..+|
T Consensus 180 IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~----~~~lT 255 (1470)
T PLN03140 180 ILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVH----VGVMT 255 (1470)
T ss_pred eccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccC----CCcCc
Confidence 5999999999999999999999999999999999987 6 9999999998764 35679999998775 44558
Q ss_pred ccccccCC-----------------HH----------------------------HHHHHHHHhc--------------c
Q 024032 161 VYDSRGFN-----------------YN----------------------------RVHEGLEELS--------------S 181 (273)
Q Consensus 161 v~en~~~~-----------------~~----------------------------~~~~~l~~~~--------------~ 181 (273)
|+||..+. .+ .+++.++.++ .
T Consensus 256 V~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~r 335 (1470)
T PLN03140 256 VKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIR 335 (1470)
T ss_pred HHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCcccc
Confidence 88873210 00 0233555554 3
Q ss_pred cCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc---------eeCCEEEEEeCCe
Q 024032 182 WMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS---------NIAEIYKALKAGD 242 (273)
Q Consensus 182 ~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv---------~~ad~i~vl~~G~ 242 (273)
.||||||||+ ++ +.+|++++|||||+|||+. +.+++++++.|.|+|++ +++|+|++|++|+
T Consensus 336 glSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ 415 (1470)
T PLN03140 336 GISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQ 415 (1470)
T ss_pred CCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCce
Confidence 6999999987 22 7899999999999999999 34566665458899998 4579999999999
Q ss_pred EeeecChhhhc
Q 024032 243 SKPLDATKRLF 253 (273)
Q Consensus 243 i~~~g~~~~l~ 253 (273)
++..|+++++.
T Consensus 416 ivy~G~~~~~~ 426 (1470)
T PLN03140 416 IVYQGPRDHIL 426 (1470)
T ss_pred EEEeCCHHHHH
Confidence 99999988874
No 360
>PRK13409 putative ATPase RIL; Provisional
Probab=99.96 E-value=7.7e-29 Score=246.10 Aligned_cols=162 Identities=15% Similarity=0.068 Sum_probs=124.5
Q ss_pred EEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEE-----------ECCeeCCC-
Q 024032 71 HKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVL-----------FAQTSSGN- 137 (273)
Q Consensus 71 ~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~-----------i~g~~i~~- 137 (273)
+++++|.. +..+ |++++ .+++|+++||+||||||||||+|+|+|+++ ++|+|. ++|+++..
T Consensus 78 ~~~~~yg~-~~~~----L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~ 151 (590)
T PRK13409 78 EPVHRYGV-NGFK----LYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNY 151 (590)
T ss_pred CceEEecC-Ccee----EecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHH
Confidence 47788842 2345 99999 899999999999999999999999999999 999997 88987642
Q ss_pred ------CCccEEEEeccchhhhccCCcccccccccCC--HHHHHHHHHHhc---------ccCCHHHHHHHH---h-cCC
Q 024032 138 ------SSHTITMYMEEHNVMRSLQSGFCVYDSRGFN--YNRVHEGLEELS---------SWMSEGVHHNQR---C-LRS 196 (273)
Q Consensus 138 ------~~~~i~~v~q~~~~~~~~~~~~tv~en~~~~--~~~~~~~l~~~~---------~~LSgGqkq~~r---~-l~~ 196 (273)
...++++.+|....++. .+..||.++.... .+.+.++++.++ .+|||||+||.. + +++
T Consensus 152 ~~~~~~~~~~~~~~~q~~~~~p~-~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~ 230 (590)
T PRK13409 152 FKKLYNGEIKVVHKPQYVDLIPK-VFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRD 230 (590)
T ss_pred HHHHhccCcceeecccchhhhhh-hhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 12345666776555443 2344888874322 345666777665 689999999872 2 789
Q ss_pred CCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCC
Q 024032 197 DDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAG 241 (273)
Q Consensus 197 p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G 241 (273)
|++|||||||++||+. +.++++.+ |.|||++ .+||++++|+++
T Consensus 231 p~lllLDEPts~LD~~~~~~l~~~i~~l~~--g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 231 ADFYFFDEPTSYLDIRQRLNVARLIRELAE--GKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 9999999999999999 33455543 8999998 558999999873
No 361
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=2.5e-28 Score=200.58 Aligned_cols=168 Identities=18% Similarity=0.203 Sum_probs=130.8
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc----CccEEEECCeeCCC---C
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS----RSGLVLFAQTSSGN---S 138 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~----~~G~I~i~g~~i~~---~ 138 (273)
.+.++||+... ++... |-++||+|.+||++.|+||||||||||+.-+.|.+. .+|+++++++++.. .
T Consensus 2 ~l~l~nvsl~l--~g~cL----La~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~ 75 (213)
T COG4136 2 MLCLKNVSLRL--PGSCL----LANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAA 75 (213)
T ss_pred ceeeeeeeecC--CCceE----EEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchh
Confidence 45688888655 45666 999999999999999999999999999999999876 48999999999864 5
Q ss_pred CccEEEEeccchhhhccCCcccccccccC----------CHHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cC
Q 024032 139 SHTITMYMEEHNVMRSLQSGFCVYDSRGF----------NYNRVHEGLEELS---------SWMSEGVHHNQ---RC-LR 195 (273)
Q Consensus 139 ~~~i~~v~q~~~~~~~~~~~~tv~en~~~----------~~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~ 195 (273)
++++|+.||++.+||++ +|.+|..+ .+..+..++++.+ .+||||||-|+ |+ +.
T Consensus 76 qRq~GiLFQD~lLFphl----sVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla 151 (213)
T COG4136 76 QRQIGILFQDALLFPHL----SVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLA 151 (213)
T ss_pred hhheeeeeccccccccc----ccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHh
Confidence 68899999999987765 89998322 2344566777776 78999998775 44 78
Q ss_pred CCCEEEEcCcCCCCCHH--HHHHH-----HHhcCCcEEEEcee--CCEEEEEeCCeEeeec
Q 024032 196 SDDCALMKNDAEIDDLK--SSPKY-----VLRRVDFAMVVSNI--AEIYKALKAGDSKPLD 247 (273)
Q Consensus 196 ~p~iLlLDEPts~LD~~--~~l~~-----l~~~~g~tiiiv~~--ad~i~vl~~G~i~~~g 247 (273)
+|+.++||||+|.||.. ++.++ ++. .|+.+++|.| .|. =.++++++.+
T Consensus 152 ~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~-agiPtv~VTHD~~Dv---pagsrVie~~ 208 (213)
T COG4136 152 QPKALLLDEPFSRLDVALRDQFRQWVFSEVRA-AGIPTVQVTHDLQDV---PAGSRVIEMA 208 (213)
T ss_pred CcceeeeCCchhHHHHHHHHHHHHHHHHHHHh-cCCCeEEEecccccC---CCCCeeeeee
Confidence 99999999999999998 44433 333 3887777733 331 1456666544
No 362
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.95 E-value=1.6e-28 Score=198.95 Aligned_cols=114 Identities=23% Similarity=0.382 Sum_probs=97.5
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCcccc
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCV 161 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv 161 (273)
|+++||+|++|++++|+||||||||||+++|+|+++ ++|.|.++|.++.. .++.+++++|+..+++ ..|+
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~tv 76 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFP----GLTV 76 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHT----TSBH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccccccccccccccccccccccccccccccccccccccc----cccc
Confidence 789999999999999999999999999999999999 99999999999875 5678999999977644 3478
Q ss_pred cccccCCHHHHHHHHHHhc-------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCC
Q 024032 162 YDSRGFNYNRVHEGLEELS-------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAE 207 (273)
Q Consensus 162 ~en~~~~~~~~~~~l~~~~-------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts 207 (273)
.+| ...+++.++++.++ ..||+|||||. ++ +++|++|||||||+
T Consensus 77 ~~~--~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 77 REN--ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HHH--HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ccc--cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 887 33445666666665 67999999987 33 79999999999996
No 363
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.95 E-value=4.5e-28 Score=236.68 Aligned_cols=171 Identities=24% Similarity=0.251 Sum_probs=130.0
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEEE
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~~ 144 (273)
+|.+++++++| +++++ |+++||++.+|+.+||||+||||||||||+|+|... ++|+|...+. .++++
T Consensus 3 ~i~~~~ls~~~--g~~~l----~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~------~~v~~ 70 (530)
T COG0488 3 MITLENLSLAY--GDRPL----LENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG------LRVGY 70 (530)
T ss_pred eEEEeeeEEee--CCcee----ecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC------ceEEE
Confidence 68899999999 67788 999999999999999999999999999999999998 9999988653 25899
Q ss_pred EeccchhhhccCCcccccccccCC-----------------------------------------HHHHHHHHHHhc---
Q 024032 145 YMEEHNVMRSLQSGFCVYDSRGFN-----------------------------------------YNRVHEGLEELS--- 180 (273)
Q Consensus 145 v~q~~~~~~~~~~~~tv~en~~~~-----------------------------------------~~~~~~~l~~~~--- 180 (273)
+.|++... ...||.+..-.. +.++..++..++
T Consensus 71 l~Q~~~~~----~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~ 146 (530)
T COG0488 71 LSQEPPLD----PEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPD 146 (530)
T ss_pred eCCCCCcC----CCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCc
Confidence 99998853 333666541100 112223333332
Q ss_pred -----ccCCHHHHHHHH---h-cCCCCEEEEcCcCCCCCHHH--HHHH-HHhcCCcEEEEc--------eeCCEEEEEeC
Q 024032 181 -----SWMSEGVHHNQR---C-LRSDDCALMKNDAEIDDLKS--SPKY-VLRRVDFAMVVS--------NIAEIYKALKA 240 (273)
Q Consensus 181 -----~~LSgGqkq~~r---~-l~~p~iLlLDEPts~LD~~~--~l~~-l~~~~g~tiiiv--------~~ad~i~vl~~ 240 (273)
.+||||||.|+. + +.+|++|||||||++||... -+.. |.+-.| |+|+| +.|++|+-++.
T Consensus 147 ~~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~g-tviiVSHDR~FLd~V~t~I~~ld~ 225 (530)
T COG0488 147 EDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPG-TVIVVSHDRYFLDNVATHILELDR 225 (530)
T ss_pred ccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHhhheEEecC
Confidence 679999998762 2 78999999999999999993 3444 434336 88888 56899999999
Q ss_pred CeEee-ecChhhhc
Q 024032 241 GDSKP-LDATKRLF 253 (273)
Q Consensus 241 G~i~~-~g~~~~l~ 253 (273)
|++.. .|.-....
T Consensus 226 g~l~~y~Gny~~~~ 239 (530)
T COG0488 226 GKLTPYKGNYSSYL 239 (530)
T ss_pred CceeEecCCHHHHH
Confidence 98865 45544443
No 364
>PLN03073 ABC transporter F family; Provisional
Probab=99.95 E-value=9.7e-28 Score=242.59 Aligned_cols=179 Identities=13% Similarity=0.065 Sum_probs=123.0
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCc----cCccEEEECCeeCCC---
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVL----SRSGLVLFAQTSSGN--- 137 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~----~~~G~I~i~g~~i~~--- 137 (273)
.+|+++|++++|. ++.+ |+++||+|++|+++||||||||||||||++|+|.. +++|+|.+.++.+..
T Consensus 176 ~~I~i~nls~~y~--~~~l----l~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~ 249 (718)
T PLN03073 176 KDIHMENFSISVG--GRDL----IVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDT 249 (718)
T ss_pred eeEEEceEEEEeC--CCEE----EECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCC
Confidence 4699999999994 4567 99999999999999999999999999999999963 378999765543210
Q ss_pred ----------------CCccEEEEeccchhhhccCCcccc----cccccCC-----------------------HHHHHH
Q 024032 138 ----------------SSHTITMYMEEHNVMRSLQSGFCV----YDSRGFN-----------------------YNRVHE 174 (273)
Q Consensus 138 ----------------~~~~i~~v~q~~~~~~~~~~~~tv----~en~~~~-----------------------~~~~~~ 174 (273)
.+..+++++|++.+.. ...++ .++.+.+ ..++.+
T Consensus 250 t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~---~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~ 326 (718)
T PLN03073 250 TALQCVLNTDIERTQLLEEEAQLVAQQRELEF---ETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAAS 326 (718)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhh---cccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHH
Confidence 0112344444432210 00000 0011111 122333
Q ss_pred HHHHhc----------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH--HHHHHHHhcCCcEEEEc--------e
Q 024032 175 GLEELS----------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK--SSPKYVLRRVDFAMVVS--------N 230 (273)
Q Consensus 175 ~l~~~~----------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~--~~l~~l~~~~g~tiiiv--------~ 230 (273)
++..++ .+||||||||. ++ +.+|++|||||||++||+. ..+..+.++.+.|||+| .
T Consensus 327 ~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tviivsHd~~~l~~ 406 (718)
T PLN03073 327 ILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHAREFLNT 406 (718)
T ss_pred HHHHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHH
Confidence 443333 57999999987 33 7899999999999999999 33444334457899888 5
Q ss_pred eCCEEEEEeCCeEe-eecChhhh
Q 024032 231 IAEIYKALKAGDSK-PLDATKRL 252 (273)
Q Consensus 231 ~ad~i~vl~~G~i~-~~g~~~~l 252 (273)
.||++++|++|++. ..|+..++
T Consensus 407 ~~d~i~~l~~g~i~~~~g~~~~~ 429 (718)
T PLN03073 407 VVTDILHLHGQKLVTYKGDYDTF 429 (718)
T ss_pred hCCEEEEEECCEEEEeCCCHHHH
Confidence 58999999999996 56665543
No 365
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.95 E-value=2.9e-27 Score=231.00 Aligned_cols=175 Identities=16% Similarity=0.192 Sum_probs=138.4
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccE
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i 142 (273)
...++++|++++|..+ +.+ ++++||.|.+|+.+|||||||+|||||||+|+|... .+|.|.+... -++
T Consensus 319 ~~vl~~~~~~~~y~~~-~~l----~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~------v~i 387 (530)
T COG0488 319 KLVLEFENVSKGYDGG-RLL----LKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET------VKI 387 (530)
T ss_pred CeeEEEeccccccCCC-cee----ecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc------eEE
Confidence 3478999999999643 667 999999999999999999999999999999999988 9999987533 358
Q ss_pred EEEeccchhhhccCCcccccccc-----cCCHHHHHHHHHHhc----------ccCCHHHHHHHHh----cCCCCEEEEc
Q 024032 143 TMYMEEHNVMRSLQSGFCVYDSR-----GFNYNRVHEGLEELS----------SWMSEGVHHNQRC----LRSDDCALMK 203 (273)
Q Consensus 143 ~~v~q~~~~~~~~~~~~tv~en~-----~~~~~~~~~~l~~~~----------~~LSgGqkq~~r~----l~~p~iLlLD 203 (273)
+|+.|+...+ ....|+.|+. ......++..+..++ ..||||||.|..+ +.+|.+||||
T Consensus 388 gyf~Q~~~~l---~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLD 464 (530)
T COG0488 388 GYFDQHRDEL---DPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLD 464 (530)
T ss_pred EEEEehhhhc---CccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEc
Confidence 9999987542 2333666652 223567888888887 6799999887632 7899999999
Q ss_pred CcCCCCCHH--HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeee-cChhhhc
Q 024032 204 NDAEIDDLK--SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPL-DATKRLF 253 (273)
Q Consensus 204 EPts~LD~~--~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~-g~~~~l~ 253 (273)
|||+.||.. +.+......+.-|||+| +.|++++.+++ ++... |..++..
T Consensus 465 EPTNhLDi~s~~aLe~aL~~f~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~ 524 (530)
T COG0488 465 EPTNHLDIESLEALEEALLDFEGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYL 524 (530)
T ss_pred CCCccCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHH
Confidence 999999999 55666556667788887 66899999998 66554 6655543
No 366
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.95 E-value=2.1e-27 Score=245.27 Aligned_cols=179 Identities=13% Similarity=0.147 Sum_probs=148.4
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC------
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------ 137 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------ 137 (273)
..+.++++++.|...+. + ++++||.|++||+.|++|||||||||++|+|.|..+ ++|++++.|.++..
T Consensus 563 ~~~~~~~L~k~y~~~~~-A----v~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~ 637 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDG-A----VRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQ 637 (885)
T ss_pred ceEEEcceeeeecchhh-h----hcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhh
Confidence 46789999999965432 4 999999999999999999999999999999999999 99999999998864
Q ss_pred CCccEEEEeccchhhhccCCccccccc-------ccCCHHH----HHHHHHHhc---------ccCCHHHHHHH----Hh
Q 024032 138 SSHTITMYMEEHNVMRSLQSGFCVYDS-------RGFNYNR----VHEGLEELS---------SWMSEGVHHNQ----RC 193 (273)
Q Consensus 138 ~~~~i~~v~q~~~~~~~~~~~~tv~en-------~~~~~~~----~~~~l~~~~---------~~LSgGqkq~~----r~ 193 (273)
.++.+||.+|...+++. +|.+|+ .++.... ++..++.++ ..+|||+|+|. ++
T Consensus 638 ~~~~iGyCPQ~d~l~~~----lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aial 713 (885)
T KOG0059|consen 638 VRKQLGYCPQFDALWEE----LTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIAL 713 (885)
T ss_pred hhhhcccCCchhhhhhh----ccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHH
Confidence 56779999999887554 488886 3444333 444555555 78999999876 33
Q ss_pred cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhc
Q 024032 194 LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLF 253 (273)
Q Consensus 194 l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~ 253 (273)
+.+|++++|||||+|+||. +.+.++++. |+++|++ .+|||+.+|.+|++...|+++++.
T Consensus 714 ig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~-g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LK 786 (885)
T KOG0059|consen 714 IGDPSVILLDEPSTGLDPKARRHLWDIIARLRKN-GKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELK 786 (885)
T ss_pred hcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHH
Confidence 7899999999999999999 446677664 6688888 568999999999999999999874
No 367
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=8.3e-27 Score=197.52 Aligned_cols=135 Identities=14% Similarity=0.225 Sum_probs=108.2
Q ss_pred EEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCc----cE
Q 024032 68 ELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSH----TI 142 (273)
Q Consensus 68 ~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~----~i 142 (273)
+.++++ +..+.+++ +.++||++.+||++-|.||||||||||||+|+|+.+ ++|+|+++|.++...+. ..
T Consensus 4 ~a~~L~--~~R~e~~l----f~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l 77 (209)
T COG4133 4 EAENLS--CERGERTL----FSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQAL 77 (209)
T ss_pred hhhhhh--hccCccee----ecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHH
Confidence 344444 34566777 999999999999999999999999999999999999 99999999998875443 22
Q ss_pred EEEeccchhhhccCCcccccccccC--------CHHHHHHHHHHhc---------ccCCHHHHHHHH---h-cCCCCEEE
Q 024032 143 TMYMEEHNVMRSLQSGFCVYDSRGF--------NYNRVHEGLEELS---------SWMSEGVHHNQR---C-LRSDDCAL 201 (273)
Q Consensus 143 ~~v~q~~~~~~~~~~~~tv~en~~~--------~~~~~~~~l~~~~---------~~LSgGqkq~~r---~-l~~p~iLl 201 (273)
-|.-.++. +...+|++||..| +.+.+.++++.++ .+||-|||+|+. + ++.+++.|
T Consensus 78 ~yLGH~~g----iK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWi 153 (209)
T COG4133 78 LYLGHQPG----IKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWI 153 (209)
T ss_pred HHhhcccc----ccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCcee
Confidence 22222232 3566799999432 4567889999988 789999988763 3 78999999
Q ss_pred EcCcCCCCCHH
Q 024032 202 MKNDAEIDDLK 212 (273)
Q Consensus 202 LDEPts~LD~~ 212 (273)
||||+++||..
T Consensus 154 LDEP~taLDk~ 164 (209)
T COG4133 154 LDEPFTALDKE 164 (209)
T ss_pred ecCcccccCHH
Confidence 99999999999
No 368
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.93 E-value=2e-26 Score=203.43 Aligned_cols=154 Identities=16% Similarity=0.160 Sum_probs=96.1
Q ss_pred ceeeeeeEEcCCcEEEEEcCCCChHHHHH-HHHhhCccCccEEEECC-------ee-----CCC---C-CccEEEEeccc
Q 024032 87 GIQKGGMDIPPVITILLMGFSGSGKSSLV-NLMYSVLSRSGLVLFAQ-------TS-----SGN---S-SHTITMYMEEH 149 (273)
Q Consensus 87 ~L~~is~~i~~Ge~~aivGpnGsGKSTLl-~ll~gl~~~~G~I~i~g-------~~-----i~~---~-~~~i~~v~q~~ 149 (273)
+|+++||+|++||++||+||||||||||+ ..|.. +|.+.+.. .. ..+ . .....+.++++
T Consensus 10 ~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (226)
T cd03270 10 NLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA----EGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIAIDQK 85 (226)
T ss_pred ccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHH----HHHHHHhhcccchhhhhhcccCccccccccCCCceEEecCC
Confidence 49999999999999999999999999995 44431 22221100 00 000 1 11223344443
Q ss_pred hhhhccCCccccc---cc----c----cCCHHHHHHHHHHhc----------ccCCHHHHHHH---Hh-cCCC--CEEEE
Q 024032 150 NVMRSLQSGFCVY---DS----R----GFNYNRVHEGLEELS----------SWMSEGVHHNQ---RC-LRSD--DCALM 202 (273)
Q Consensus 150 ~~~~~~~~~~tv~---en----~----~~~~~~~~~~l~~~~----------~~LSgGqkq~~---r~-l~~p--~iLlL 202 (273)
.... ....++. +. . ........+.++.++ .+|||||+||. ++ +.+| ++|||
T Consensus 86 ~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llll 163 (226)
T cd03270 86 TTSR--NPRSTVGTVTEIYDYLRLLFARVGIRERLGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVL 163 (226)
T ss_pred CCCC--CCCccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 2110 1111111 10 0 001111234454443 67999999987 33 5676 69999
Q ss_pred cCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEE------eCCeEeeec
Q 024032 203 KNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKAL------KAGDSKPLD 247 (273)
Q Consensus 203 DEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl------~~G~i~~~g 247 (273)
||||++||+. +.+++++++ |.|+|++ .+||++++| ++|+|+++|
T Consensus 164 DEPt~gLD~~~~~~l~~~l~~~~~~-g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 164 DEPSIGLHPRDNDRLIETLKRLRDL-GNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred eCCccCCCHHHHHHHHHHHHHHHhC-CCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEecC
Confidence 9999999998 335555544 8999999 568999999 999999875
No 369
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=2.4e-26 Score=192.30 Aligned_cols=173 Identities=17% Similarity=0.171 Sum_probs=123.2
Q ss_pred ceEEEEEEEEeecCCe-eeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCee----CC---
Q 024032 66 LNELRHKFLSYRSGDF-WIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTS----SG--- 136 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~-~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~----i~--- 136 (273)
.+.++|++++|.-..+ -+...+|+++||+++.||++++=||||||||||||+|.+-|. ++|+|++.-.. +-
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~ 83 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAE 83 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccC
Confidence 5788999998854211 111234999999999999999999999999999999999999 99999985432 11
Q ss_pred -----C-CCccEEEEeccchhhhccCCccc-cccc---ccCCHH----HHHHHHHHhc----------ccCCHHHHHHHH
Q 024032 137 -----N-SSHTITMYMEEHNVMRSLQSGFC-VYDS---RGFNYN----RVHEGLEELS----------SWMSEGVHHNQR 192 (273)
Q Consensus 137 -----~-~~~~i~~v~q~~~~~~~~~~~~t-v~en---~~~~~~----~~~~~l~~~~----------~~LSgGqkq~~r 192 (273)
+ .++.+|||.|-....|+. ..+. |.|- .+.+.+ ++...+.+++ .++|||||||..
T Consensus 84 pr~vl~vRr~TiGyVSQFLRviPRV-~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVN 162 (235)
T COG4778 84 PREVLEVRRTTIGYVSQFLRVIPRV-SALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVN 162 (235)
T ss_pred hHHHHHHHHhhhHHHHHHHHhccCc-chHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehh
Confidence 1 346688888866655442 1111 2221 233433 3444455554 789999999873
Q ss_pred ---h-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeC
Q 024032 193 ---C-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKA 240 (273)
Q Consensus 193 ---~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~ 240 (273)
. +.+=+||+|||||++||.. +++.+-..+ |.+++=| ..|||++-|..
T Consensus 163 IaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~-GaAlvGIFHDeevre~vadR~~~~~~ 227 (235)
T COG4778 163 IARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKAR-GAALVGIFHDEEVREAVADRLLDVSA 227 (235)
T ss_pred hhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhc-CceEEEeeccHHHHHHHhhheeeccc
Confidence 2 6788999999999999998 445554444 8888777 56788887743
No 370
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.92 E-value=1.7e-25 Score=207.31 Aligned_cols=195 Identities=15% Similarity=0.161 Sum_probs=147.2
Q ss_pred hhhhhhHHHHHHHhchhh-hc-----cCCCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHH
Q 024032 41 NVSTLTPRLRVLREMERL-AL-----IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSL 114 (273)
Q Consensus 41 ~~~~~~~r~~~~~~~~~~-~~-----~~~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTL 114 (273)
.+..+.+++.++..-++. .. .+.-+.+|++||.|.|.... -- +..||++|++||++-|+|.||||||||
T Consensus 291 ~AqvA~~kiakle~~~~~a~~~~~q~~p~~~~lelrnvrfay~~~~-Fh----vgPiNl~ikrGelvFliG~NGsGKST~ 365 (546)
T COG4615 291 TAQVAFNKIAKLELAPYKADFPRPQAFPDWKTLELRNVRFAYQDNA-FH----VGPINLTIKRGELVFLIGGNGSGKSTL 365 (546)
T ss_pred HHHHHHHHHHHhhcCCccccCCCCCcCCcccceeeeeeeeccCccc-ce----ecceeeEEecCcEEEEECCCCCcHHHH
Confidence 455666666666432211 11 11124799999999997643 22 899999999999999999999999999
Q ss_pred HHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCcccccccccCCHHHHHHHHHHhc--------
Q 024032 115 VNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELS-------- 180 (273)
Q Consensus 115 l~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~~~~~~~~~~~l~~~~-------- 180 (273)
++++.|+++ ++|+|++||+++.. .|+-++.+|.|..+|+.+. -.|+. .+.+.+...++++.
T Consensus 366 ~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll----~~e~~-as~q~i~~~LqrLel~~ktsl~ 440 (546)
T COG4615 366 AMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL----GPEGK-ASPQLIEKWLQRLELAHKTSLN 440 (546)
T ss_pred HHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh----CCccC-CChHHHHHHHHHHHHhhhhccc
Confidence 999999999 99999999999863 5566677888888765432 12222 35566666666654
Q ss_pred ------ccCCHHHHHHHHh----cCCCCEEEEcCcCCCCCHH-------HHHHHHHhcCCcEEEEc-------eeCCEEE
Q 024032 181 ------SWMSEGVHHNQRC----LRSDDCALMKNDAEIDDLK-------SSPKYVLRRVDFAMVVS-------NIAEIYK 236 (273)
Q Consensus 181 ------~~LSgGqkq~~r~----l~~p~iLlLDEPts~LD~~-------~~l~~l~~~~g~tiiiv-------~~ad~i~ 236 (273)
..||-|||+|.+. +-+-+|+++||=.+.-||. ..+-.+.++ |+||+.| .+|||++
T Consensus 441 d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~q-GKTI~aIsHDd~YF~~ADrll 519 (546)
T COG4615 441 DGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQ-GKTIFAISHDDHYFIHADRLL 519 (546)
T ss_pred CCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHh-CCeEEEEecCchhhhhHHHHH
Confidence 5699999998743 6789999999999999999 233445544 9999999 4578999
Q ss_pred EEeCCeEeee
Q 024032 237 ALKAGDSKPL 246 (273)
Q Consensus 237 vl~~G~i~~~ 246 (273)
.|++|++++.
T Consensus 520 ~~~~G~~~e~ 529 (546)
T COG4615 520 EMRNGQLSEL 529 (546)
T ss_pred HHhcCceeec
Confidence 9999999875
No 371
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.91 E-value=2.1e-24 Score=186.96 Aligned_cols=139 Identities=19% Similarity=0.235 Sum_probs=101.9
Q ss_pred e-eeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-C---------ccEEEECCeeCCC--CCccEEEEeccchhhhc
Q 024032 88 I-QKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R---------SGLVLFAQTSSGN--SSHTITMYMEEHNVMRS 154 (273)
Q Consensus 88 L-~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~---------~G~I~i~g~~i~~--~~~~i~~v~q~~~~~~~ 154 (273)
+ ++++|++++| +++|+||||||||||+++|+|++. . .|++.+.|++... .++++++++|++..+
T Consensus 12 ~~~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~-- 88 (197)
T cd03278 12 FADKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR-- 88 (197)
T ss_pred cCCCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc--
Confidence 6 7789999999 999999999999999999999875 3 3467777776532 346799999998753
Q ss_pred cCCcccccccccCCHHHHHHHHHHhc------ccCCHHHHHHH---Hhc-----CCCCEEEEcCcCCCCCHH------HH
Q 024032 155 LQSGFCVYDSRGFNYNRVHEGLEELS------SWMSEGVHHNQ---RCL-----RSDDCALMKNDAEIDDLK------SS 214 (273)
Q Consensus 155 ~~~~~tv~en~~~~~~~~~~~l~~~~------~~LSgGqkq~~---r~l-----~~p~iLlLDEPts~LD~~------~~ 214 (273)
+ ... ..+++.++++... ..||+|||||. +++ .+|+++||||||++||+. +.
T Consensus 89 --~--~~~-----~~~~~~~~l~~~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~ 159 (197)
T cd03278 89 --Y--SII-----SQGDVSEIIEAPGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARL 159 (197)
T ss_pred --e--eEE-----ehhhHHHHHhCCCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 1 111 1234444444421 78999999986 222 467999999999999999 23
Q ss_pred HHHHHhcCCcEEEEc-------eeCCEEEEEeC
Q 024032 215 PKYVLRRVDFAMVVS-------NIAEIYKALKA 240 (273)
Q Consensus 215 l~~l~~~~g~tiiiv-------~~ad~i~vl~~ 240 (273)
++++.+ +.|||++ ..||+++.|..
T Consensus 160 l~~~~~--~~tiIiitH~~~~~~~~d~v~~~~~ 190 (197)
T cd03278 160 LKEFSK--ETQFIVITHRKGTMEAADRLYGVTM 190 (197)
T ss_pred HHHhcc--CCEEEEEECCHHHHhhcceEEEEEe
Confidence 444433 6788888 55788888753
No 372
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.90 E-value=2.2e-23 Score=187.88 Aligned_cols=161 Identities=18% Similarity=0.206 Sum_probs=105.9
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHh-----hCc-----------------cCccEEEECCeeCCC-CCcc---
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMY-----SVL-----------------SRSGLVLFAQTSSGN-SSHT--- 141 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~-----gl~-----------------~~~G~I~i~g~~i~~-~~~~--- 141 (273)
|++++++|+.|.+++|.|+||||||||++.+. ..+ ...--|.+++.++.. .|..
T Consensus 11 l~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~~t 90 (261)
T cd03271 11 LKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNPAT 90 (261)
T ss_pred CCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcHHH
Confidence 99999999999999999999999999998652 110 011135666666642 1111
Q ss_pred EEEEeccchh---------------h--------hccCCcccccccccC-----CHHHHHHHHHHhc----------ccC
Q 024032 142 ITMYMEEHNV---------------M--------RSLQSGFCVYDSRGF-----NYNRVHEGLEELS----------SWM 183 (273)
Q Consensus 142 i~~v~q~~~~---------------~--------~~~~~~~tv~en~~~-----~~~~~~~~l~~~~----------~~L 183 (273)
...++++... . ......+|+.|+..+ ...++.+.++.++ .+|
T Consensus 91 y~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~~~~~~~~L~~vgL~~l~l~~~~~~L 170 (261)
T cd03271 91 YTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPKIARKLQTLCDVGLGYIKLGQPATTL 170 (261)
T ss_pred HHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhhHHHHHHHHHHcCCchhhhcCccccC
Confidence 1112221000 0 000123455555321 1123444555554 679
Q ss_pred CHHHHHHHH---h-cCC---CCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEE-----
Q 024032 184 SEGVHHNQR---C-LRS---DDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKAL----- 238 (273)
Q Consensus 184 SgGqkq~~r---~-l~~---p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl----- 238 (273)
||||+||.. + +.+ |+++||||||+|||+. +.++++.++ |.|||++ ..||++++|
T Consensus 171 SgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~-g~tvIiitH~~~~i~~aD~ii~Lgp~~g 249 (261)
T cd03271 171 SGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDK-GNTVVVIEHNLDVIKCADWIIDLGPEGG 249 (261)
T ss_pred CHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHhCCEEEEecCCcC
Confidence 999999873 3 443 7999999999999999 335556544 8999999 458999999
Q ss_pred -eCCeEeeecCh
Q 024032 239 -KAGDSKPLDAT 249 (273)
Q Consensus 239 -~~G~i~~~g~~ 249 (273)
++|+|++.|++
T Consensus 250 ~~~G~iv~~Gt~ 261 (261)
T cd03271 250 DGGGQVVASGTP 261 (261)
T ss_pred CCCCEEEEeCCC
Confidence 89999999874
No 373
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.90 E-value=3.2e-24 Score=221.61 Aligned_cols=160 Identities=14% Similarity=0.123 Sum_probs=130.7
Q ss_pred ceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc---CccEEEECCeeCC--CCCccEEEEeccchhhhccCCcccc
Q 024032 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS---RSGLVLFAQTSSG--NSSHTITMYMEEHNVMRSLQSGFCV 161 (273)
Q Consensus 87 ~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~---~~G~I~i~g~~i~--~~~~~i~~v~q~~~~~~~~~~~~tv 161 (273)
.|+||+=-++||-.+||+|+|||||||||++|+|-.. .+|+|.++|.+.. ..+|.+||+-|+..+. ...||
T Consensus 806 LL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~----~~~TV 881 (1391)
T KOG0065|consen 806 LLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHS----PELTV 881 (1391)
T ss_pred hhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccC----cccch
Confidence 3999999999999999999999999999999999754 6999999999987 3678899999988864 45599
Q ss_pred ccccc----------CCH----HHHHHHHHHhc-------------ccCCHHHHHHHHh----cCCC-CEEEEcCcCCCC
Q 024032 162 YDSRG----------FNY----NRVHEGLEELS-------------SWMSEGVHHNQRC----LRSD-DCALMKNDAEID 209 (273)
Q Consensus 162 ~en~~----------~~~----~~~~~~l~~~~-------------~~LSgGqkq~~r~----l~~p-~iLlLDEPts~L 209 (273)
+|... .+. +-++++++.++ ..||..||+|..+ +.+| .||+||||||||
T Consensus 882 rESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGL 961 (1391)
T KOG0065|consen 882 RESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGL 961 (1391)
T ss_pred HHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCCc
Confidence 99621 121 33566666655 4599999887633 6899 899999999999
Q ss_pred CHH------HHHHHHHhcCCcEEEEc---------eeCCEEEEEe-CCeEeeecChhh
Q 024032 210 DLK------SSPKYVLRRVDFAMVVS---------NIAEIYKALK-AGDSKPLDATKR 251 (273)
Q Consensus 210 D~~------~~l~~l~~~~g~tiiiv---------~~ad~i~vl~-~G~i~~~g~~~~ 251 (273)
|.. +.+++++.. |.||+.+ +..|++++|+ +|+.+..|+..+
T Consensus 962 DsqaA~~i~~~lrkla~t-GqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 962 DSQAAAIVMRFLRKLADT-GQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred cHHHHHHHHHHHHHHHhc-CCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence 999 557788875 9999999 4569999985 688999998755
No 374
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.90 E-value=2.2e-23 Score=200.57 Aligned_cols=174 Identities=11% Similarity=0.133 Sum_probs=135.6
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC------C
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------S 138 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------~ 138 (273)
.+++++++..- . ++|+||++++|||+||.|-=|||+|=|+++|.|..+ .+|+|.++|+++.. .
T Consensus 263 ~l~v~~l~~~~------~----~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai 332 (500)
T COG1129 263 VLEVRNLSGGG------K----VRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAI 332 (500)
T ss_pred EEEEecCCCCC------c----eeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHH
Confidence 56677776531 2 899999999999999999999999999999999888 99999999998753 3
Q ss_pred CccEEEEeccchhhhccCCcccccccccC------------CHH----HHHHHHHHhc----------ccCCHHHHHHH-
Q 024032 139 SHTITMYMEEHNVMRSLQSGFCVYDSRGF------------NYN----RVHEGLEELS----------SWMSEGVHHNQ- 191 (273)
Q Consensus 139 ~~~i~~v~q~~~~~~~~~~~~tv~en~~~------------~~~----~~~~~l~~~~----------~~LSgGqkq~~- 191 (273)
+.-++|++.+... ..++..++|.+|..+ +.. .+.+..+.+. ..||||.||+.
T Consensus 333 ~~Gi~~v~EDRk~-~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVv 411 (500)
T COG1129 333 KAGIAYVPEDRKS-EGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVV 411 (500)
T ss_pred HcCCEeCCccccc-CcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHH
Confidence 3467888776432 223455678887321 111 2233334333 78999999987
Q ss_pred --Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhh
Q 024032 192 --RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKR 251 (273)
Q Consensus 192 --r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~ 251 (273)
|. ..+|++|||||||-|+|.. .++++++++ |++||++ .+||||+||++|+++..-+.++
T Consensus 412 larwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~-G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~~ 487 (500)
T COG1129 412 LARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAE-GKAILMISSELPELLGLSDRILVMREGRIVGELDREE 487 (500)
T ss_pred HHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHC-CCEEEEEeCChHHHHhhCCEEEEEECCEEEEEecccc
Confidence 33 7899999999999999998 557788877 9999999 6899999999999998666655
No 375
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.89 E-value=2e-22 Score=197.46 Aligned_cols=150 Identities=16% Similarity=0.224 Sum_probs=120.7
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccE
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i 142 (273)
...+.++|++..-+.+. .. |++.+|+|++|+.+-|.||||||||||+|+|+|+.+ -+|+|.+-. ...+
T Consensus 390 ~~~i~~~nl~l~~p~~~-~l----l~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~------~~~~ 458 (604)
T COG4178 390 DHGITLENLSLRTPDGQ-TL----LSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA------DSAL 458 (604)
T ss_pred cceeEEeeeeEECCCCC-ee----eccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC------CCce
Confidence 36799999999887654 66 999999999999999999999999999999999999 999998752 1346
Q ss_pred EEEeccchhhhccCCccccccc-------ccCCHHHHHHHHHHhc---------------ccCCHHHHHHH---Hh-cCC
Q 024032 143 TMYMEEHNVMRSLQSGFCVYDS-------RGFNYNRVHEGLEELS---------------SWMSEGVHHNQ---RC-LRS 196 (273)
Q Consensus 143 ~~v~q~~~~~~~~~~~~tv~en-------~~~~~~~~~~~l~~~~---------------~~LSgGqkq~~---r~-l~~ 196 (273)
-|++|.|.+ +..|.+|- ..++++++.++|.+++ ..||+|||||. |+ +++
T Consensus 459 lflpQ~PY~-----p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~k 533 (604)
T COG4178 459 LFLPQRPYL-----PQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHK 533 (604)
T ss_pred EEecCCCCC-----CCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcC
Confidence 788888873 33366663 1267788888888877 56999999987 44 899
Q ss_pred CCEEEEcCcCCCCCHHH--HHHHHHhc--CCcEEEEc
Q 024032 197 DDCALMKNDAEIDDLKS--SPKYVLRR--VDFAMVVS 229 (273)
Q Consensus 197 p~iLlLDEPts~LD~~~--~l~~l~~~--~g~tiiiv 229 (273)
|++++|||.|++||+.. .+.++.++ .+.|||-|
T Consensus 534 P~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV 570 (604)
T COG4178 534 PKWVFLDEATSALDEETEDRLYQLLKEELPDATVISV 570 (604)
T ss_pred CCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEe
Confidence 99999999999999993 23333333 48899888
No 376
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.89 E-value=7.3e-23 Score=178.94 Aligned_cols=161 Identities=16% Similarity=0.151 Sum_probs=106.6
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEc-CCcEEEEEcCCCChHHHHHHHHhhC-cc-CccEEEECC----eeCCCC
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIP-PVITILLMGFSGSGKSSLVNLMYSV-LS-RSGLVLFAQ----TSSGNS 138 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~-~Ge~~aivGpnGsGKSTLl~ll~gl-~~-~~G~I~i~g----~~i~~~ 138 (273)
.++++|+. +|.. -.+++|+.. +|++++|+||||||||||+++|++. +. ..+....+. ......
T Consensus 5 ~i~l~nf~-~y~~---------~~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~ 74 (213)
T cd03279 5 KLELKNFG-PFRE---------EQVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGED 74 (213)
T ss_pred EEEEECCc-CcCC---------ceEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCc
Confidence 46777776 5532 244566644 5899999999999999999999964 43 444444321 111224
Q ss_pred CccEEEEeccchhhhccCCcccccccccCCHHHHHHH-----------HHHhcccCCHHHHHHH---Hhc----------
Q 024032 139 SHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEG-----------LEELSSWMSEGVHHNQ---RCL---------- 194 (273)
Q Consensus 139 ~~~i~~v~q~~~~~~~~~~~~tv~en~~~~~~~~~~~-----------l~~~~~~LSgGqkq~~---r~l---------- 194 (273)
...+++++|+.... .++..+.+.+.+.+.+. ++.-...||+||+||. +++
T Consensus 75 ~~~v~~~f~~~~~~------~~~~r~~gl~~~~~~~~~~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~ 148 (213)
T cd03279 75 TAEVSFTFQLGGKK------YRVERSRGLDYDQFTRIVLLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRG 148 (213)
T ss_pred cEEEEEEEEECCeE------EEEEEecCCCHHHHHHhhhhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhcc
Confidence 45688888876431 13333445554433321 1222277999999986 332
Q ss_pred -CCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeE
Q 024032 195 -RSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDS 243 (273)
Q Consensus 195 -~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i 243 (273)
.+|+++||||||++||+. +.++++.++ +.|+|++ ..+|+++++++|.+
T Consensus 149 ~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~-~~tii~itH~~~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 149 GARLEALFIDEGFGTLDPEALEAVATALELIRTE-NRMVGVISHVEELKERIPQRLEVIKTPGG 211 (213)
T ss_pred CCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence 268999999999999998 345556554 8899888 55799999999864
No 377
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.88 E-value=3.1e-23 Score=198.27 Aligned_cols=175 Identities=16% Similarity=0.175 Sum_probs=127.5
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccE
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i 142 (273)
...+.++|++|.|..+. .+ +++++|-|..++.+|+|||||+|||||||++.|.+. ..|.|.-.-.. ++
T Consensus 387 ~pvi~~~nv~F~y~~~~-~i----y~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~------~~ 455 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYSDNP-MI----YKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHN------KL 455 (614)
T ss_pred CCeEEEeccccCCCCcc-hh----hhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccc------cc
Confidence 45789999999997543 56 999999999999999999999999999999999998 99998654332 23
Q ss_pred EEEeccchhhhccCCccccccc-----c-cCCHHHHHHHHHHhc----------ccCCHHHHHHH---Hh-cCCCCEEEE
Q 024032 143 TMYMEEHNVMRSLQSGFCVYDS-----R-GFNYNRVHEGLEELS----------SWMSEGVHHNQ---RC-LRSDDCALM 202 (273)
Q Consensus 143 ~~v~q~~~~~~~~~~~~tv~en-----~-~~~~~~~~~~l~~~~----------~~LSgGqkq~~---r~-l~~p~iLlL 202 (273)
+++-|....- +....+..++ . ....+.++..+.+++ .+||+|||.|+ ++ +.+|.+|||
T Consensus 456 ~~y~Qh~~e~--ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlL 533 (614)
T KOG0927|consen 456 PRYNQHLAEQ--LDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLL 533 (614)
T ss_pred hhhhhhhHhh--cCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEe
Confidence 3344432211 1222233333 2 234667888888888 78999998876 22 789999999
Q ss_pred cCcCCCCCHH--HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEee-ecChhh
Q 024032 203 KNDAEIDDLK--SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKP-LDATKR 251 (273)
Q Consensus 203 DEPts~LD~~--~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~-~g~~~~ 251 (273)
||||++||.. ..+.+...+..-+|+++ .+|++|++..+|.+.. .|+...
T Consensus 534 DEPtnhLDi~tid~laeaiNe~~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~~ 593 (614)
T KOG0927|consen 534 DEPTNHLDIETIDALAEAINEFPGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIEI 593 (614)
T ss_pred cCCCcCCCchhHHHHHHHHhccCCceeeeechhhHHHHHHHHhHhhccCceeecCccHHH
Confidence 9999999998 45555444444455555 5678888888887754 555443
No 378
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.88 E-value=2.1e-22 Score=178.62 Aligned_cols=142 Identities=18% Similarity=0.208 Sum_probs=84.9
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhC----------------cc-Ccc--------EEEECCeeC----C--
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSV----------------LS-RSG--------LVLFAQTSS----G-- 136 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl----------------~~-~~G--------~I~i~g~~i----~-- 136 (273)
+.+++ |++++|+||||||||||+++|+++ +. .+| +|.+++.+- .
T Consensus 18 ~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ 92 (243)
T cd03272 18 IEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNRFPIDKE 92 (243)
T ss_pred cccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCccCCCCC
Confidence 77766 789999999999999999999844 33 344 444443211 0
Q ss_pred --CCCccEEEEeccchhhhccCCccccccc------ccCC---------HHHHHHHH------HHhcccCCHHHHHHH--
Q 024032 137 --NSSHTITMYMEEHNVMRSLQSGFCVYDS------RGFN---------YNRVHEGL------EELSSWMSEGVHHNQ-- 191 (273)
Q Consensus 137 --~~~~~i~~v~q~~~~~~~~~~~~tv~en------~~~~---------~~~~~~~l------~~~~~~LSgGqkq~~-- 191 (273)
..++.+++++++..+++. ..|..+. .++. ..++.+.+ +.-...|||||+||.
T Consensus 93 ~~~i~r~ig~~~~~~~l~~~---~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l~~l~~~~~~~~~~lS~G~~~r~~l 169 (243)
T cd03272 93 EVRLRRTIGLKKDEYFLDKK---NVTKNDVMNLLESAGFSRSNPYYIVPQGKINSLTNMKQDEQQEMQQLSGGQKSLVAL 169 (243)
T ss_pred EEEEEEEEECCCCEEEECCe---EcCHHHHHHHHHHcCCCCCCCcEEEEcCchHHhhhccccccccccccCHHHHHHHHH
Confidence 123345554444332211 0121111 0111 11111111 112267999999986
Q ss_pred -Hhc-----CCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEe
Q 024032 192 -RCL-----RSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALK 239 (273)
Q Consensus 192 -r~l-----~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~ 239 (273)
+++ .+|+++||||||++||+. +.++++.+ +.++|++ ..||++++|.
T Consensus 170 a~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~--~~~ii~~~h~~~~~~~~d~i~~l~ 234 (243)
T cd03272 170 ALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD--GAQFITTTFRPELLEVADKFYGVK 234 (243)
T ss_pred HHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC--CCEEEEEecCHHHHhhCCEEEEEE
Confidence 333 358999999999999999 23444433 6777777 6689998874
No 379
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.86 E-value=1.6e-21 Score=169.67 Aligned_cols=147 Identities=12% Similarity=0.124 Sum_probs=101.3
Q ss_pred eeEEcCCcEEEEEcCCCChHHHHHHHHh----hCcc-CccEEEECCeeCC--CCCccEEEEeccchhhhcc--CCccccc
Q 024032 92 GMDIPPVITILLMGFSGSGKSSLVNLMY----SVLS-RSGLVLFAQTSSG--NSSHTITMYMEEHNVMRSL--QSGFCVY 162 (273)
Q Consensus 92 s~~i~~Ge~~aivGpnGsGKSTLl~ll~----gl~~-~~G~I~i~g~~i~--~~~~~i~~v~q~~~~~~~~--~~~~tv~ 162 (273)
++++.+| +++|+||||||||||+++|. |... ..|.+..+...+. ..+..+++++|++. .+.+ .-.++++
T Consensus 17 ~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~-~~~~~v~r~~~~~ 94 (204)
T cd03240 17 EIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENAN-GKKYTITRSLAIL 94 (204)
T ss_pred EEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCC-CCEEEEEEEhhHh
Confidence 4556677 99999999999999999995 7766 6676652222222 24457888888772 1111 1123777
Q ss_pred ccccC-CHHHHHHHHHHhcccCCHHHHHHH---------Hh-cCCCCEEEEcCcCCCCCHH--H-HH----HHHHhcCCc
Q 024032 163 DSRGF-NYNRVHEGLEELSSWMSEGVHHNQ---------RC-LRSDDCALMKNDAEIDDLK--S-SP----KYVLRRVDF 224 (273)
Q Consensus 163 en~~~-~~~~~~~~l~~~~~~LSgGqkq~~---------r~-l~~p~iLlLDEPts~LD~~--~-~l----~~l~~~~g~ 224 (273)
+|..+ ...++.+.++.....||+||+|+. ++ +.+|+++||||||++||+. . .+ +++.++.+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~ 174 (204)
T cd03240 95 ENVIFCHQGESNWPLLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNF 174 (204)
T ss_pred hceeeechHHHHHHHhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCC
Confidence 77533 344566667666689999999962 22 5899999999999999997 3 33 233333367
Q ss_pred EEEEc-------eeCCEEEEEeC
Q 024032 225 AMVVS-------NIAEIYKALKA 240 (273)
Q Consensus 225 tiiiv-------~~ad~i~vl~~ 240 (273)
|||++ ..||+++.|++
T Consensus 175 ~iiiitH~~~~~~~~d~i~~l~~ 197 (204)
T cd03240 175 QLIVITHDEELVDAADHIYRVEK 197 (204)
T ss_pred EEEEEEecHHHHhhCCEEEEEee
Confidence 88888 45899988854
No 380
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.85 E-value=1.6e-20 Score=180.88 Aligned_cols=201 Identities=16% Similarity=0.196 Sum_probs=149.0
Q ss_pred hhhhhhhccchhhhhhhhHHHHHHHhchh-----------------h------------hccCCCCceEEEEEEEEeecC
Q 024032 29 FDECVKLKLDLPNVSTLTPRLRVLREMER-----------------L------------ALIAPDGLNELRHKFLSYRSG 79 (273)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-----------------~------------~~~~~~~~i~~~~v~~~y~~g 79 (273)
|..+.....++.+....+.|+.++.+.-. + +....+..+++++|+++-+.+
T Consensus 367 f~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~~~~~~Dn~i~~e~v~l~tPt~ 446 (659)
T KOG0060|consen 367 FGRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGSGKAEPADNAIEFEEVSLSTPTN 446 (659)
T ss_pred HHHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCCCCcccccccceEEeeeeeecCCCC
Confidence 44445555666777788888888765210 0 011124579999999988775
Q ss_pred CeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEEEEeccchhhhccCCc
Q 024032 80 DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSG 158 (273)
Q Consensus 80 ~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~ 158 (273)
+..+ ++++||+|++|+-+-|.||||||||+|+|.++|+++ .+|.+......- .+.+-|++|.|.. ..
T Consensus 447 g~~l----ie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~---~~~lfflPQrPYm-----t~ 514 (659)
T KOG0060|consen 447 GDLL----IENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGG---PKDLFFLPQRPYM-----TL 514 (659)
T ss_pred Ccee----eeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCC---CCceEEecCCCCc-----cc
Confidence 4455 889999999999999999999999999999999999 999998644321 1447788888763 22
Q ss_pred cccccc------------ccCCHHHHHHHHHHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEE
Q 024032 159 FCVYDS------------RGFNYNRVHEGLEELS--------------------SWMSEGVHHNQ---RC-LRSDDCALM 202 (273)
Q Consensus 159 ~tv~en------------~~~~~~~~~~~l~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlL 202 (273)
.|.+|- ...+.+++.+.|+.+. ..||+||+||. |+ .++|++.||
T Consensus 515 GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiL 594 (659)
T KOG0060|consen 515 GTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAIL 594 (659)
T ss_pred cchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEe
Confidence 255553 1234566666666554 56999999997 44 799999999
Q ss_pred cCcCCCCCHH--HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCC
Q 024032 203 KNDAEIDDLK--SSPKYVLRRVDFAMVVS-------NIAEIYKALKAG 241 (273)
Q Consensus 203 DEPts~LD~~--~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G 241 (273)
||-||++|.. ..+-+..++.|+|.|-| ++-|.++-|+.+
T Consensus 595 DE~TSAv~~dvE~~~Yr~~r~~giT~iSVgHRkSL~kfHd~~L~~~g~ 642 (659)
T KOG0060|consen 595 DECTSAVTEDVEGALYRKCREMGITFISVGHRKSLWKFHDYVLRMDGR 642 (659)
T ss_pred echhhhccHHHHHHHHHHHHHcCCeEEEeccHHHHHhhhhEEEEecCC
Confidence 9999999887 66777777779999988 556888888753
No 381
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.85 E-value=4.7e-21 Score=165.56 Aligned_cols=190 Identities=16% Similarity=0.215 Sum_probs=140.5
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCccC-----ccEEEECCeeCCC---
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSR-----SGLVLFAQTSSGN--- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~~-----~G~I~i~g~~i~~--- 137 (273)
++.++|++..+...+-.+ ++++++|+++..||+-|+||.||||||-..|+|+|..++ .-...+++.++-.
T Consensus 3 LLDIrnL~IE~~TsqG~v--K~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~P 80 (330)
T COG4170 3 LLDIRNLTIEFKTSQGWV--KAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSP 80 (330)
T ss_pred cccccceEEEEecCCCce--EeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCCh
Confidence 567788888776554444 459999999999999999999999999999999998763 3444566665432
Q ss_pred ------CCccEEEEeccchhh--hccCCccccccc-------------ccCCHHHHHHHHHHhc------------ccCC
Q 024032 138 ------SSHTITMYMEEHNVM--RSLQSGFCVYDS-------------RGFNYNRVHEGLEELS------------SWMS 184 (273)
Q Consensus 138 ------~~~~i~~v~q~~~~~--~~~~~~~tv~en-------------~~~~~~~~~~~l~~~~------------~~LS 184 (273)
..+.++++||++..- |....+..+.+| .+..+.++.+.+.+++ .+|.
T Consensus 81 r~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElT 160 (330)
T COG4170 81 RERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELT 160 (330)
T ss_pred HHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhc
Confidence 224578899987531 000000111122 2334566777888887 6799
Q ss_pred HHHHHHH----HhcCCCCEEEEcCcCCCCCHHH------HHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeee
Q 024032 185 EGVHHNQ----RCLRSDDCALMKNDAEIDDLKS------SPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPL 246 (273)
Q Consensus 185 gGqkq~~----r~l~~p~iLlLDEPts~LD~~~------~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~ 246 (273)
.||-|++ +++.+|++||.||||+++++.. ++..+++..|.||+++ ..||+|-||.-|+-++.
T Consensus 161 eGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~ES 240 (330)
T COG4170 161 EGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVES 240 (330)
T ss_pred cCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEecccccc
Confidence 9998875 3378999999999999999992 2345566668999988 67899999999999999
Q ss_pred cChhhhccChh
Q 024032 247 DATKRLFSAPG 257 (273)
Q Consensus 247 g~~~~l~~~~~ 257 (273)
+..+++.+.|.
T Consensus 241 a~~e~l~~~Ph 251 (330)
T COG4170 241 APSEELVTMPH 251 (330)
T ss_pred cchhHHhcCCC
Confidence 99999987653
No 382
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=5.1e-21 Score=179.68 Aligned_cols=159 Identities=17% Similarity=0.197 Sum_probs=120.5
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccE
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i 142 (273)
+..+-+.+|+|.|+ |.++. ++.++|-|.--..+|||||||.||||||++|.|-+. ..|+.+- ..+-+|
T Consensus 584 PPvLGlH~VtFgy~-gqkpL----FkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RK------nhrL~i 652 (807)
T KOG0066|consen 584 PPVLGLHDVTFGYP-GQKPL----FKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRK------NHRLRI 652 (807)
T ss_pred CCeeecccccccCC-CCCch----hhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhc------cceeee
Confidence 34788999999996 45677 999999999999999999999999999999999887 8887653 234568
Q ss_pred EEEeccchhhhccCCccccccc----ccCCHHHHHHHHHHhc----------ccCCHHHHHHHH----hcCCCCEEEEcC
Q 024032 143 TMYMEEHNVMRSLQSGFCVYDS----RGFNYNRVHEGLEELS----------SWMSEGVHHNQR----CLRSDDCALMKN 204 (273)
Q Consensus 143 ~~v~q~~~~~~~~~~~~tv~en----~~~~~~~~~~~l~~~~----------~~LSgGqkq~~r----~l~~p~iLlLDE 204 (273)
|++-|+..-- +...-|..++ ..++++.++..|-.++ ..|||||+-|+. ++..|++|||||
T Consensus 653 G~FdQh~~E~--L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDE 730 (807)
T KOG0066|consen 653 GWFDQHANEA--LNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDE 730 (807)
T ss_pred echhhhhHHh--hccccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecC
Confidence 8877765531 1111222222 2456788888888777 679999988763 389999999999
Q ss_pred cCCCCCHH--HHHHHHHhcCCcEEEEceeCCEE
Q 024032 205 DAEIDDLK--SSPKYVLRRVDFAMVVSNIAEIY 235 (273)
Q Consensus 205 Pts~LD~~--~~l~~l~~~~g~tiiiv~~ad~i 235 (273)
||++||+. ..+.+...++.-.||||.|..|+
T Consensus 731 PTNNLDIESIDALaEAIney~GgVi~VsHDeRL 763 (807)
T KOG0066|consen 731 PTNNLDIESIDALAEAINEYNGGVIMVSHDERL 763 (807)
T ss_pred CCCCcchhhHHHHHHHHHhccCcEEEEecccce
Confidence 99999999 44555445556678888665554
No 383
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.84 E-value=4.6e-22 Score=174.18 Aligned_cols=147 Identities=14% Similarity=0.101 Sum_probs=84.3
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeCCCCC-ccEEEE
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSS-HTITMY 145 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i~~~~-~~i~~v 145 (273)
++++|.. +| ++..+ +++++| ++++|+||||||||||+++|...+ |.+....+ ++++++
T Consensus 6 l~l~nfk-~~--~~~~~----l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~~---------G~~~~~~~~~~i~~~ 64 (212)
T cd03274 6 LVLENFK-SY--AGEQV----IGPFHK-----SFSAIVGPNGSGKSNVIDSMLFVF---------GFRASKMRQKKLSDL 64 (212)
T ss_pred EEEECcc-cC--CCCee----eccCCC-----CeEEEECCCCCCHHHHHHHHHHHh---------ccCHHHhhhhhHHHH
Confidence 5566653 55 45556 888887 799999999999999999998331 11111111 122233
Q ss_pred eccchhhhccCCcccccccc---------------cC---------------CHHHHHHHHHHhcccCCHHHHHHH---H
Q 024032 146 MEEHNVMRSLQSGFCVYDSR---------------GF---------------NYNRVHEGLEELSSWMSEGVHHNQ---R 192 (273)
Q Consensus 146 ~q~~~~~~~~~~~~tv~en~---------------~~---------------~~~~~~~~l~~~~~~LSgGqkq~~---r 192 (273)
+++....+ .+++.++. +. ....+.+..+.....||+|||||. +
T Consensus 65 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~ 140 (212)
T cd03274 65 IHNSAGHP----NLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLAL 140 (212)
T ss_pred hcCCCCCC----CCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHH
Confidence 32222111 01111110 00 000001111222267999999976 3
Q ss_pred hc-----CCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeC
Q 024032 193 CL-----RSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKA 240 (273)
Q Consensus 193 ~l-----~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~ 240 (273)
++ .+|++++|||||++||+. +.++++.+ +.|+|++ ++||++++|..
T Consensus 141 al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~--~~~~iivs~~~~~~~~~d~v~~~~~ 204 (212)
T cd03274 141 VFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTK--NAQFIVISLRNNMFELADRLVGIYK 204 (212)
T ss_pred HHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcC--CCEEEEEECcHHHHHhCCEEEEEEe
Confidence 22 247999999999999998 33455543 4455555 67899999853
No 384
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.84 E-value=1.5e-20 Score=168.12 Aligned_cols=140 Identities=16% Similarity=0.144 Sum_probs=94.5
Q ss_pred CcEEEEEcCCCChHHHHHHHHhhCcc-C-ccEEEECCe-eC-C------CCCccEEEEeccchhh--h---ccCCccccc
Q 024032 98 VITILLMGFSGSGKSSLVNLMYSVLS-R-SGLVLFAQT-SS-G------NSSHTITMYMEEHNVM--R---SLQSGFCVY 162 (273)
Q Consensus 98 Ge~~aivGpnGsGKSTLl~ll~gl~~-~-~G~I~i~g~-~i-~------~~~~~i~~v~q~~~~~--~---~~~~~~tv~ 162 (273)
..+++||||||||||||+++|++++. . .|++...+. ++ . ....++.+++|++... + .....+||.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 45999999999999999999999987 4 568887766 32 1 1234788999985310 0 011223444
Q ss_pred ccc-------------cCCHHHHHHHHHHhc-----------------------------ccCCHHHHHHH---Hhc---
Q 024032 163 DSR-------------GFNYNRVHEGLEELS-----------------------------SWMSEGVHHNQ---RCL--- 194 (273)
Q Consensus 163 en~-------------~~~~~~~~~~l~~~~-----------------------------~~LSgGqkq~~---r~l--- 194 (273)
++. ....+++.+.++.++ ..||+||||+. +++
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~ 184 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALL 184 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHh
Confidence 321 112345555665553 46899999986 222
Q ss_pred --CCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEe
Q 024032 195 --RSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALK 239 (273)
Q Consensus 195 --~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~ 239 (273)
.+|+++||||||++||+. +.++++. + |.|+|++ +.||+++-+.
T Consensus 185 ~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~-g~~ii~iSH~~~~~~~~d~v~~~~ 242 (251)
T cd03273 185 LFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-K-GSQFIVVSLKEGMFNNANVLFRTR 242 (251)
T ss_pred hccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-C-CCEEEEEECCHHHHHhCCEEEEEE
Confidence 578999999999999999 2234443 3 7888888 5578886653
No 385
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.84 E-value=3.5e-20 Score=191.39 Aligned_cols=75 Identities=9% Similarity=0.102 Sum_probs=62.8
Q ss_pred ccCCHHHHHHHHh----cCCC---CEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEE--
Q 024032 181 SWMSEGVHHNQRC----LRSD---DCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKAL-- 238 (273)
Q Consensus 181 ~~LSgGqkq~~r~----l~~p---~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl-- 238 (273)
.+|||||+||..+ +.+| +++||||||+|||+. +.++++.++ |.|||++ ..||+|++|
T Consensus 829 ~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~-G~TVIiitH~~~~i~~aD~ii~Lgp 907 (943)
T PRK00349 829 TTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDK-GNTVVVIEHNLDVIKTADWIIDLGP 907 (943)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHhCCEEEEecC
Confidence 6799999998732 6777 999999999999999 335556544 8999999 458999999
Q ss_pred ----eCCeEeeecChhhhccCh
Q 024032 239 ----KAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 239 ----~~G~i~~~g~~~~l~~~~ 256 (273)
++|+|++.|+++++...+
T Consensus 908 ~~G~~~G~Iv~~Gt~~el~~~~ 929 (943)
T PRK00349 908 EGGDGGGEIVATGTPEEVAKVE 929 (943)
T ss_pred CcCCCCCEEEEeCCHHHHHhCc
Confidence 799999999999998654
No 386
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.83 E-value=5.6e-20 Score=197.75 Aligned_cols=73 Identities=12% Similarity=0.069 Sum_probs=61.3
Q ss_pred ccCCHHHHHHH---Hhc----CCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEe-
Q 024032 181 SWMSEGVHHNQ---RCL----RSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALK- 239 (273)
Q Consensus 181 ~~LSgGqkq~~---r~l----~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~- 239 (273)
.+|||||+||. +++ .+|++|||||||+|||+. +.++++.++ |.|||++ ..||++++|.
T Consensus 808 ~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~-G~TVIiIsHdl~~i~~aDrVi~L~p 886 (1809)
T PRK00635 808 SSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQ-GHTVVIIEHNMHVVKVADYVLELGP 886 (1809)
T ss_pred ccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHhCCEEEEEcc
Confidence 67999999987 333 599999999999999999 345566655 8999998 5689999996
Q ss_pred -----CCeEeeecChhhhcc
Q 024032 240 -----AGDSKPLDATKRLFS 254 (273)
Q Consensus 240 -----~G~i~~~g~~~~l~~ 254 (273)
+|+++..|+++++..
T Consensus 887 ~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 887 EGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred CCCCCCCEEEEeCCHHHHHh
Confidence 799999999999874
No 387
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.83 E-value=4.1e-20 Score=177.02 Aligned_cols=184 Identities=14% Similarity=0.117 Sum_probs=111.6
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEE--EECCeeCCCC-C
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLV--LFAQTSSGNS-S 139 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I--~i~g~~i~~~-~ 139 (273)
...+.+.+++++|. +..+ ++|+.|++.+|+.+||+|||||||||+|++|.|-.. ..=.+ +...+.+... .
T Consensus 73 s~dvk~~sls~s~~--g~~l----~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~ 146 (614)
T KOG0927|consen 73 SRDVKIESLSLSFH--GVEL----IKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEK 146 (614)
T ss_pred cccceeeeeeeccC--Ccee----eeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchH
Confidence 45789999999985 4667 999999999999999999999999999999998643 22222 2222222110 0
Q ss_pred ccEEEEec----cchhhhccC-----C--------cccccccc-cCC----HHHHHHHHHHhc----------ccCCHHH
Q 024032 140 HTITMYME----EHNVMRSLQ-----S--------GFCVYDSR-GFN----YNRVHEGLEELS----------SWMSEGV 187 (273)
Q Consensus 140 ~~i~~v~q----~~~~~~~~~-----~--------~~tv~en~-~~~----~~~~~~~l~~~~----------~~LSgGq 187 (273)
..+-.+++ ....+..+. . ..++++.. ..+ ..++.+++..++ ..||||+
T Consensus 147 ~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGw 226 (614)
T KOG0927|consen 147 QAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGW 226 (614)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchH
Confidence 00001110 000000000 0 00000000 000 111122222222 6799999
Q ss_pred HHHHH---h-cCCCCEEEEcCcCCCCCHHH--HHHHHHhcCCc-EEEEc--------eeCCEEEEEeCCe-EeeecChhh
Q 024032 188 HHNQR---C-LRSDDCALMKNDAEIDDLKS--SPKYVLRRVDF-AMVVS--------NIAEIYKALKAGD-SKPLDATKR 251 (273)
Q Consensus 188 kq~~r---~-l~~p~iLlLDEPts~LD~~~--~l~~l~~~~g~-tiiiv--------~~ad~i~vl~~G~-i~~~g~~~~ 251 (273)
+.|.+ + +.+|++|||||||++||+.. -+.++..++.. +++++ ..|..|+.|++++ +.+.|+.+.
T Consensus 227 rmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~Gnydq 306 (614)
T KOG0927|consen 227 RMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEGNYDQ 306 (614)
T ss_pred HHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEecchhhhhhHhhhhheecccceeeecCCHHH
Confidence 88763 3 78999999999999999993 34443333355 66666 6789999999999 556777766
Q ss_pred hc
Q 024032 252 LF 253 (273)
Q Consensus 252 l~ 253 (273)
+.
T Consensus 307 y~ 308 (614)
T KOG0927|consen 307 YV 308 (614)
T ss_pred Hh
Confidence 54
No 388
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.82 E-value=1.1e-19 Score=172.88 Aligned_cols=181 Identities=14% Similarity=0.173 Sum_probs=139.6
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeC-CC----
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSS-GN---- 137 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i-~~---- 137 (273)
+..+++++++..-+.+ .+ ++++|||+|+.|||+||.|=.|-|-+-|+.+|+|+.+ .+|+|.++|+++ ..
T Consensus 255 ~~vL~V~~L~v~~~~~-~~----~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~ 329 (501)
T COG3845 255 EVVLEVEDLSVKDRRG-VT----AVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPR 329 (501)
T ss_pred CeEEEEeeeEeecCCC-Cc----eeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHH
Confidence 4578999999865433 23 3999999999999999999999999999999999998 779999999997 21
Q ss_pred --CCccEEEEeccchhhhccCCccccccccc--------------CCHHHH----HHHHHHhc----------ccCCHHH
Q 024032 138 --SSHTITMYMEEHNVMRSLQSGFCVYDSRG--------------FNYNRV----HEGLEELS----------SWMSEGV 187 (273)
Q Consensus 138 --~~~~i~~v~q~~~~~~~~~~~~tv~en~~--------------~~~~~~----~~~l~~~~----------~~LSgGq 187 (273)
.+.-++++|.+.. -..+...+|+.||.- ++...+ .+.++++. ..||||.
T Consensus 330 ~~r~~G~~~VPedR~-~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGN 408 (501)
T COG3845 330 ERRRLGLAYVPEDRH-GHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGN 408 (501)
T ss_pred HHHhcCCccCChhhc-cCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcc
Confidence 2345777777653 223345668888821 122333 33444444 6799999
Q ss_pred HHHHHh----cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecCh
Q 024032 188 HHNQRC----LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDAT 249 (273)
Q Consensus 188 kq~~r~----l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~ 249 (273)
+||.-+ .++|++||+.+||-|||.. +.+.+.+++ |++|+++ .+||||+||.+|+++...++
T Consensus 409 qQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~-G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~~ 487 (501)
T COG3845 409 QQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDA-GKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPP 487 (501)
T ss_pred eehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhc-CCEEEEEehhHHHHHHhhheeeeeeCCceeccccc
Confidence 998622 7899999999999999998 334455555 9999998 78999999999999988777
Q ss_pred hh
Q 024032 250 KR 251 (273)
Q Consensus 250 ~~ 251 (273)
++
T Consensus 488 ~~ 489 (501)
T COG3845 488 EE 489 (501)
T ss_pred cc
Confidence 65
No 389
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.82 E-value=1.1e-19 Score=187.43 Aligned_cols=71 Identities=10% Similarity=0.101 Sum_probs=58.9
Q ss_pred ccCCHHHHHHHHh----cC---CCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEE--
Q 024032 181 SWMSEGVHHNQRC----LR---SDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKAL-- 238 (273)
Q Consensus 181 ~~LSgGqkq~~r~----l~---~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl-- 238 (273)
.+|||||+||..+ +. +|+++||||||+|||+. +.++++.++ |.|||++ ..||++++|
T Consensus 827 ~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~-G~TVIvi~H~~~~i~~aD~ii~Lgp 905 (924)
T TIGR00630 827 TTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQ-GNTVVVIEHNLDVIKTADYIIDLGP 905 (924)
T ss_pred ccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHhCCEEEEecC
Confidence 6799999998732 33 59999999999999999 345556544 8999999 458999999
Q ss_pred ----eCCeEeeecChhhh
Q 024032 239 ----KAGDSKPLDATKRL 252 (273)
Q Consensus 239 ----~~G~i~~~g~~~~l 252 (273)
++|++++.|+++++
T Consensus 906 ~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 906 EGGDGGGTIVASGTPEEV 923 (924)
T ss_pred CccCCCCEEEEeCCHHHh
Confidence 79999999998875
No 390
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.82 E-value=2.8e-19 Score=153.97 Aligned_cols=183 Identities=19% Similarity=0.189 Sum_probs=127.8
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN----- 137 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~----- 137 (273)
...|++.++.|+|...+ ++ +-|+|++++.|....+||.||||||||||+|+|-.- -.|.|.+.|.+.-.
T Consensus 11 ~~aievsgl~f~y~~~d-P~----~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~ 85 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVSD-PI----FFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLE 85 (291)
T ss_pred cceEEEeccEEecccCC-ce----EEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCcccccccc
Confidence 56799999999997544 66 999999999999999999999999999999999766 67999999876421
Q ss_pred -----------CCccEEEEeccchhhhccCCccccccc----ccCCHHHHHHHHHHhc-------ccCCHHHHHHHHh--
Q 024032 138 -----------SSHTITMYMEEHNVMRSLQSGFCVYDS----RGFNYNRVHEGLEELS-------SWMSEGVHHNQRC-- 193 (273)
Q Consensus 138 -----------~~~~i~~v~q~~~~~~~~~~~~tv~en----~~~~~~~~~~~l~~~~-------~~LSgGqkq~~r~-- 193 (273)
+.+..++ ..+..+ ...+++..- .+.+.++-+..++.+. ..+|.|||+|+.+
T Consensus 86 ~Sgdl~YLGgeW~~~~~~-agevpl----q~D~sae~mifgV~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicM 160 (291)
T KOG2355|consen 86 SSGDLSYLGGEWSKTVGI-AGEVPL----QGDISAEHMIFGVGGDDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICM 160 (291)
T ss_pred ccCceeEecccccccccc-cccccc----cccccHHHHHhhccCCChhHhhhhhhheeccceEEEeeccccchhhhHHHH
Confidence 1111111 001110 111122211 1223333334444433 7799999988633
Q ss_pred --cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEee---ecChhhhcc
Q 024032 194 --LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKP---LDATKRLFS 254 (273)
Q Consensus 194 --l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~---~g~~~~l~~ 254 (273)
++.-++|+|||-|-.||.. +.+++-+++.|.||+.. +.+.+++.|.+|+++. .+...++-+
T Consensus 161 GLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~l~~~~i~e~~~ 240 (291)
T KOG2355|consen 161 GLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDNLKYQKIKEFST 240 (291)
T ss_pred hcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeeeccccchhhhhhc
Confidence 5556999999999999998 34555566679999998 4568999999999987 445555544
Q ss_pred Ch
Q 024032 255 AP 256 (273)
Q Consensus 255 ~~ 256 (273)
.+
T Consensus 241 ~~ 242 (291)
T KOG2355|consen 241 SP 242 (291)
T ss_pred cc
Confidence 43
No 391
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.80 E-value=3.2e-19 Score=159.34 Aligned_cols=137 Identities=17% Similarity=0.135 Sum_probs=86.2
Q ss_pred EEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCee--CCC--------CCccEEEEec--cchhhhccCCcccccc---
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTS--SGN--------SSHTITMYME--EHNVMRSLQSGFCVYD--- 163 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~--i~~--------~~~~i~~v~q--~~~~~~~~~~~~tv~e--- 163 (273)
+++|+||||||||||+.+|++++. ..|.+...+.. +.. ....+...++ +... ..+..++.+
T Consensus 24 ~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~---~~~~~~~~~~~~ 100 (247)
T cd03275 24 FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEE---KTFRRIITGGSS 100 (247)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcE---EEEEEEEECCce
Confidence 999999999999999999999887 66777543321 100 0122333333 2111 011111111
Q ss_pred -----cccCCHHHHHHHHHHhc-------------------------------ccCCHHHHHHH---Hh-c----CCCCE
Q 024032 164 -----SRGFNYNRVHEGLEELS-------------------------------SWMSEGVHHNQ---RC-L----RSDDC 199 (273)
Q Consensus 164 -----n~~~~~~~~~~~l~~~~-------------------------------~~LSgGqkq~~---r~-l----~~p~i 199 (273)
+...+.+.+.+.++.++ ..||+||||+. ++ + .+|++
T Consensus 101 ~~~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~ 180 (247)
T cd03275 101 SYRINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPF 180 (247)
T ss_pred EEEECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCE
Confidence 12233444444444433 46899999976 33 3 25899
Q ss_pred EEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeC
Q 024032 200 ALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKA 240 (273)
Q Consensus 200 LlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~ 240 (273)
+||||||++||+. +.++++.++ |.|+|+| ..||++++|..
T Consensus 181 lllDEPt~~LD~~~~~~l~~~i~~~~~~-g~~vi~isH~~~~~~~~d~i~~~~~ 233 (247)
T cd03275 181 FVLDEVDAALDNTNVGKVASYIREQAGP-NFQFIVISLKEEFFSKADALVGVYR 233 (247)
T ss_pred EEEecccccCCHHHHHHHHHHHHHhccC-CcEEEEEECCHHHHhhCCeEEEEEe
Confidence 9999999999998 345555544 8898888 56899988853
No 392
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.79 E-value=7.5e-19 Score=152.30 Aligned_cols=143 Identities=13% Similarity=0.107 Sum_probs=91.4
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCC------CCCccEEEEeccchhhhccCCccc
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSG------NSSHTITMYMEEHNVMRSLQSGFC 160 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~------~~~~~i~~v~q~~~~~~~~~~~~t 160 (273)
++++++++.+| +.+|+||||||||||+.+|.-.+. ... ....|.... .....+..++++...++
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~------- 82 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDA------- 82 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc-cccccccHHHHhhCCCCeEEEEEEEEcCCccC-------
Confidence 67778888887 889999999999999999975433 211 111122111 12344666676655321
Q ss_pred cccccc--CCHHHHHHHHHHhc------ccCCHHHHHHHH---h-----cCCCCEEEEcCcCCCCCHH------HHHHHH
Q 024032 161 VYDSRG--FNYNRVHEGLEELS------SWMSEGVHHNQR---C-----LRSDDCALMKNDAEIDDLK------SSPKYV 218 (273)
Q Consensus 161 v~en~~--~~~~~~~~~l~~~~------~~LSgGqkq~~r---~-----l~~p~iLlLDEPts~LD~~------~~l~~l 218 (273)
|.. ...+.+.++++.-. .+||+||||+.. + +.+|+++||||||++||+. +.++++
T Consensus 83 ---~~~~~~~~~~~~~~l~~~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~ 159 (198)
T cd03276 83 ---NPLCVLSQDMARSFLTSNKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKE 159 (198)
T ss_pred ---CcCCHHHHHHHHHHhccccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHH
Confidence 211 22345555555411 789999999762 2 3799999999999999998 334454
Q ss_pred Hhc--CCcEEEEc-------eeCCEEEEEeCCe
Q 024032 219 LRR--VDFAMVVS-------NIAEIYKALKAGD 242 (273)
Q Consensus 219 ~~~--~g~tiiiv-------~~ad~i~vl~~G~ 242 (273)
.++ .+.||+++ ...|+|.+|..++
T Consensus 160 ~~~~~~~~~iii~th~~~~i~~~d~v~~~~~~~ 192 (198)
T cd03276 160 AKKQPGRQFIFITPQDISGLASSDDVKVFRMKD 192 (198)
T ss_pred HhcCCCcEEEEEECCcccccccccceeEEEecC
Confidence 433 13577777 2238888887643
No 393
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=4.1e-19 Score=169.39 Aligned_cols=166 Identities=16% Similarity=0.187 Sum_probs=130.6
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEE
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~ 143 (273)
..+++..|+|.|..+...+ +.+++++++.-..++++|+||+||||++|++.|-.. ..|.+.+.+ |.+++
T Consensus 361 p~l~i~~V~f~y~p~~y~~----~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~------r~ri~ 430 (582)
T KOG0062|consen 361 PNLRISYVAFEYTPSEYQW----RKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP------RLRIK 430 (582)
T ss_pred CeeEEEeeeccCCCcchhh----hhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc------cceec
Confidence 4789999999998765455 999999999999999999999999999999999777 888876643 46788
Q ss_pred EEeccchhhhccCCccccc--c-----cccCCHHHHHHHHHHhc----------ccCCHHHHHHHH--h--cCCCCEEEE
Q 024032 144 MYMEEHNVMRSLQSGFCVY--D-----SRGFNYNRVHEGLEELS----------SWMSEGVHHNQR--C--LRSDDCALM 202 (273)
Q Consensus 144 ~v~q~~~~~~~~~~~~tv~--e-----n~~~~~~~~~~~l~~~~----------~~LSgGqkq~~r--~--l~~p~iLlL 202 (273)
+..|....+. ...|. | .++...+++++.+..+| ..||||||-|+. + ..+|-+|+|
T Consensus 431 ~f~Qhhvd~l----~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVL 506 (582)
T KOG0062|consen 431 YFAQHHVDFL----DKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVL 506 (582)
T ss_pred chhHhhhhHH----HHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEe
Confidence 8888665431 11221 1 14567889999999988 569999987762 2 789999999
Q ss_pred cCcCCCCCHH--HHH-HHHHhcCCcEEEEc--------eeCCEEEEEeCCeEee
Q 024032 203 KNDAEIDDLK--SSP-KYVLRRVDFAMVVS--------NIAEIYKALKAGDSKP 245 (273)
Q Consensus 203 DEPts~LD~~--~~l-~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~ 245 (273)
||||+.||.. ..+ +.+. .++-.||+| ..|+.+++.++|++..
T Consensus 507 DEPTNhLD~dsl~AL~~Al~-~F~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 507 DEPTNHLDRDSLGALAKALK-NFNGGVVLVSHDEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred cCCCccccHHHHHHHHHHHH-hcCCcEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence 9999999999 334 4444 344556666 5689999999999975
No 394
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.79 E-value=3.5e-19 Score=154.24 Aligned_cols=134 Identities=13% Similarity=0.119 Sum_probs=89.6
Q ss_pred eeeeeeEEcCCc-EEEEEcCCCChHHHHHHHHh-hCcc-Ccc-EEEECCeeCCCCCccEEEEeccchhhhccCCcccccc
Q 024032 88 IQKGGMDIPPVI-TILLMGFSGSGKSSLVNLMY-SVLS-RSG-LVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYD 163 (273)
Q Consensus 88 L~~is~~i~~Ge-~~aivGpnGsGKSTLl~ll~-gl~~-~~G-~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~e 163 (273)
+-++||++.+|+ +++|.||||||||||+++|+ +.+. ..| .+-.. .. ..++++.|....
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~-~~-----~~~~~~~~~~~~------------ 78 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAA-EG-----SSLPVFENIFAD------------ 78 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCcccc-cc-----ccCcCccEEEEe------------
Confidence 567899999995 89999999999999999998 2222 233 11110 00 012222222110
Q ss_pred cccCCHHHHHHHHHHhcccCCHHHHHHHHh---cCCCCEEEEcCcCCCCCHHH-------HHHHHHhcCCcEEEEc----
Q 024032 164 SRGFNYNRVHEGLEELSSWMSEGVHHNQRC---LRSDDCALMKNDAEIDDLKS-------SPKYVLRRVDFAMVVS---- 229 (273)
Q Consensus 164 n~~~~~~~~~~~l~~~~~~LSgGqkq~~r~---l~~p~iLlLDEPts~LD~~~-------~l~~l~~~~g~tiiiv---- 229 (273)
.+.. +.+..-.+.+|+||+|+..+ +.+|+++|+|||++++|+.. .++.+.+. +.++|++
T Consensus 79 -lg~~-----~~l~~~~s~fs~g~~~~~~i~~~~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~-~~~vi~~tH~~ 151 (200)
T cd03280 79 -IGDE-----QSIEQSLSTFSSHMKNIARILQHADPDSLVLLDELGSGTDPVEGAALAIAILEELLER-GALVIATTHYG 151 (200)
T ss_pred -cCch-----hhhhcCcchHHHHHHHHHHHHHhCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhc-CCEEEEECCHH
Confidence 0100 11222236789999987633 78999999999999999982 23444443 8888888
Q ss_pred ---eeCCEEEEEeCCeEeee
Q 024032 230 ---NIAEIYKALKAGDSKPL 246 (273)
Q Consensus 230 ---~~ad~i~vl~~G~i~~~ 246 (273)
.++|++++|++|++..+
T Consensus 152 ~l~~~~d~~~~l~~g~l~~~ 171 (200)
T cd03280 152 ELKAYAYKREGVENASMEFD 171 (200)
T ss_pred HHHHHHhcCCCeEEEEEEEe
Confidence 56799999999999866
No 395
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=7.1e-19 Score=167.75 Aligned_cols=171 Identities=16% Similarity=0.143 Sum_probs=107.8
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeCCCCCccEEEE
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMY 145 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i~~~~~~i~~v 145 (273)
.|.+.+.+..| |++.+ |++-++++..|..+||+|+||+|||||||+|+. |.|......- +.+ +..
T Consensus 80 Di~~~~fdLa~--G~k~L----L~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~-----~~v~~f~veq-E~~---g~~ 144 (582)
T KOG0062|consen 80 DIHIDNFDLAY--GGKIL----LNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN-----GQVSGFHVEQ-EVR---GDD 144 (582)
T ss_pred ceeeeeeeeee--cchhh----hcCCceeeecccccceeCCCCCcHHHHHHHHHh-----cCcCccCchh-hee---ccc
Confidence 56666677666 67777 999999999999999999999999999999996 3443322110 000 000
Q ss_pred eccchhhhccCCccccccc--------ccCCHHHHHH-HHHHhc----------ccCCHHHHHHH---Hh-cCCCCEEEE
Q 024032 146 MEEHNVMRSLQSGFCVYDS--------RGFNYNRVHE-GLEELS----------SWMSEGVHHNQ---RC-LRSDDCALM 202 (273)
Q Consensus 146 ~q~~~~~~~~~~~~tv~en--------~~~~~~~~~~-~l~~~~----------~~LSgGqkq~~---r~-l~~p~iLlL 202 (273)
.. .+...+.....+.+. .....+++.. +|..++ ..||||.|-|. || +.+||||||
T Consensus 145 t~--~~~~~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLL 222 (582)
T KOG0062|consen 145 TE--ALQSVLESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLL 222 (582)
T ss_pred hH--HHhhhhhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEee
Confidence 00 000000001111111 1112233333 666666 78999998765 44 789999999
Q ss_pred cCcCCCCCHHHH--HHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEe-eecChhhhc
Q 024032 203 KNDAEIDDLKSS--PKYVLRRVDFAMVVS--------NIAEIYKALKAGDSK-PLDATKRLF 253 (273)
Q Consensus 203 DEPts~LD~~~~--l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~-~~g~~~~l~ 253 (273)
||||+.||.... +....+....|+|+| +.|..|+.+++-++- +.|+-+++.
T Consensus 223 DEPTNhLDv~av~WLe~yL~t~~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fv 284 (582)
T KOG0062|consen 223 DEPTNHLDVVAVAWLENYLQTWKITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFV 284 (582)
T ss_pred cCCcccchhHHHHHHHHHHhhCCceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHH
Confidence 999999999944 444444446788888 345666777766653 356655554
No 396
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.77 E-value=1.4e-18 Score=163.83 Aligned_cols=134 Identities=16% Similarity=0.175 Sum_probs=96.2
Q ss_pred EEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEEEEeccchhhhccCCccccccccc------
Q 024032 94 DIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRG------ 166 (273)
Q Consensus 94 ~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en~~------ 166 (273)
+|..||+++++||||-||||++++|+|.++ ++|. ..+ -+++|-+|-... .+..||.+...
T Consensus 363 ~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~-----~~vSyKPQyI~~----~~~gtV~~~l~~~~~~~ 429 (591)
T COG1245 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EED-----LKVSYKPQYISP----DYDGTVEDLLRSAIRSA 429 (591)
T ss_pred eeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Ccc-----ceEeecceeecC----CCCCcHHHHHHHhhhhh
Confidence 356678999999999999999999999999 9997 222 245666664332 23446655310
Q ss_pred C----------CHHHHHHHHHHhcccCCHHHHHHHHh----cCCCCEEEEcCcCCCCCHHH------HHHHHHhcCCcEE
Q 024032 167 F----------NYNRVHEGLEELSSWMSEGVHHNQRC----LRSDDCALMKNDAEIDDLKS------SPKYVLRRVDFAM 226 (273)
Q Consensus 167 ~----------~~~~~~~~l~~~~~~LSgGqkq~~r~----l~~p~iLlLDEPts~LD~~~------~l~~l~~~~g~ti 226 (273)
+ ..-.++..+++-...|||||.||+++ .++++++|||||++.||..+ .++++.+..++|.
T Consensus 430 ~~~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta 509 (591)
T COG1245 430 FGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTA 509 (591)
T ss_pred cccchhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceE
Confidence 0 01123445555558899999998732 68999999999999999994 4677777668899
Q ss_pred EEce--------eCCEEEEEeC
Q 024032 227 VVSN--------IAEIYKALKA 240 (273)
Q Consensus 227 iiv~--------~ad~i~vl~~ 240 (273)
++|. ++||++|++.
T Consensus 510 ~vVdHDi~~~dyvsDr~ivF~G 531 (591)
T COG1245 510 LVVDHDIYMIDYVSDRLIVFEG 531 (591)
T ss_pred EEEecceehhhhhhceEEEEec
Confidence 9883 4689888853
No 397
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.75 E-value=6.6e-18 Score=175.26 Aligned_cols=163 Identities=15% Similarity=0.123 Sum_probs=130.7
Q ss_pred ceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc----CccEEEECCeeCCC--CCccEEEEeccchhhhccCCccc
Q 024032 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS----RSGLVLFAQTSSGN--SSHTITMYMEEHNVMRSLQSGFC 160 (273)
Q Consensus 87 ~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~----~~G~I~i~g~~i~~--~~~~i~~v~q~~~~~~~~~~~~t 160 (273)
+|+|+++-+++|+.+.++||.|||||||+++++|-.. ..|+|.++|.+..+ .++.++|..|+..+++. +|
T Consensus 130 il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~----lT 205 (1391)
T KOG0065|consen 130 ILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPE----LT 205 (1391)
T ss_pred eecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccce----eE
Confidence 4999999999999999999999999999999999765 37899999998875 34678888888887554 49
Q ss_pred cccccc--------------CCHHH-----HHHHHHHhc--------------ccCCHHHHHHHHh----cCCCCEEEEc
Q 024032 161 VYDSRG--------------FNYNR-----VHEGLEELS--------------SWMSEGVHHNQRC----LRSDDCALMK 203 (273)
Q Consensus 161 v~en~~--------------~~~~~-----~~~~l~~~~--------------~~LSgGqkq~~r~----l~~p~iLlLD 203 (273)
|+|... .++.+ .+..++.++ ...|||||+|+.. +.+|+++.+|
T Consensus 206 VreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~D 285 (1391)
T KOG0065|consen 206 VRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWD 285 (1391)
T ss_pred EeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeee
Confidence 988621 12222 234566666 5699999888732 7899999999
Q ss_pred CcCCCCCHH------HHHHHHHhcCCcEEEEc---------eeCCEEEEEeCCeEeeecChhhhc
Q 024032 204 NDAEIDDLK------SSPKYVLRRVDFAMVVS---------NIAEIYKALKAGDSKPLDATKRLF 253 (273)
Q Consensus 204 EPts~LD~~------~~l~~l~~~~g~tiiiv---------~~ad~i~vl~~G~i~~~g~~~~l~ 253 (273)
|+|.|||.. ..++.+.+..+.|++++ .+.|.|++|.+|+++.+|+.++.+
T Consensus 286 e~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~ 350 (1391)
T KOG0065|consen 286 EITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVL 350 (1391)
T ss_pred cccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHH
Confidence 999999999 33455666667788877 556999999999999999998875
No 398
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.73 E-value=2.8e-17 Score=157.28 Aligned_cols=147 Identities=18% Similarity=0.245 Sum_probs=111.1
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEEEE
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~~v 145 (273)
|.++|+-.--+.+ ..+ +..++|+|++|-.+-|.||||||||+|+++|.|+++ ..|...+- .+.++-|+
T Consensus 482 I~lenIpvItP~~-~vv----v~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P------~~~~mFYI 550 (728)
T KOG0064|consen 482 IILENIPVITPAG-DVL----VPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIP------RPNNIFYI 550 (728)
T ss_pred eEEecCceeccCc-cee----ecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecC------CCcceEec
Confidence 6677776655544 345 899999999999999999999999999999999999 88877653 23347777
Q ss_pred eccchhhhccCCccccccc------------ccCCHHHHHHHHHHhc------------------ccCCHHHHHHH---H
Q 024032 146 MEEHNVMRSLQSGFCVYDS------------RGFNYNRVHEGLEELS------------------SWMSEGVHHNQ---R 192 (273)
Q Consensus 146 ~q~~~~~~~~~~~~tv~en------------~~~~~~~~~~~l~~~~------------------~~LSgGqkq~~---r 192 (273)
||.|.. ...|.+|- .++.+++....++.+. ..||||||||. |
T Consensus 551 PQRPYm-----s~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mAR 625 (728)
T KOG0064|consen 551 PQRPYM-----SGGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMAR 625 (728)
T ss_pred cCCCcc-----CcCcccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHH
Confidence 887762 23344442 3455666666555543 56999999987 4
Q ss_pred h-cCCCCEEEEcCcCCCC--CHHHHHHHHHhcCCcEEEEc
Q 024032 193 C-LRSDDCALMKNDAEID--DLKSSPKYVLRRVDFAMVVS 229 (273)
Q Consensus 193 ~-l~~p~iLlLDEPts~L--D~~~~l~~l~~~~g~tiiiv 229 (273)
+ .++|+..+|||-||+. |.+..+-+..+..|.+.+-|
T Consensus 626 m~yHrPkyalLDEcTsAvsidvE~~i~~~ak~~gi~llsi 665 (728)
T KOG0064|consen 626 MFYHRPKYALLDECTSAVSIDVEGKIFQAAKDAGISLLSI 665 (728)
T ss_pred HHhcCcchhhhhhhhcccccchHHHHHHHHHhcCceEEEe
Confidence 4 7999999999999987 55577777777778888877
No 399
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.69 E-value=2.9e-17 Score=142.56 Aligned_cols=114 Identities=16% Similarity=0.107 Sum_probs=73.1
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeCCCCCccEEEEeccchhhhccCCcccccccccC
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGF 167 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en~~~ 167 (273)
+++++|+. |++++|+||||||||||+|+|+|... +...|.++... .+++|...+ +..+|+.||...
T Consensus 17 ~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~----l~~~G~~v~a~----~~~~q~~~l----~~~~~~~d~l~~ 82 (199)
T cd03283 17 ANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI----LAQAGAPVCAS----SFELPPVKI----FTSIRVSDDLRD 82 (199)
T ss_pred cceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH----HHHcCCEEecC----ccCcccceE----EEeccchhcccc
Confidence 78877765 79999999999999999999998653 11233333221 245663333 555688887433
Q ss_pred CH-------HHHHHHHHHhcccCCHHHHHHHHhcCCCCEEEEcCcCCCCCHHH-------HHHHHHhcCCcEEEEc
Q 024032 168 NY-------NRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKS-------SPKYVLRRVDFAMVVS 229 (273)
Q Consensus 168 ~~-------~~~~~~l~~~~~~LSgGqkq~~r~l~~p~iLlLDEPts~LD~~~-------~l~~l~~~~g~tiiiv 229 (273)
.. .++.++++.++ +.+|+++|||||++|+|+.. .++.+.+. +.|+|++
T Consensus 83 ~~s~~~~e~~~~~~iL~~~~-------------~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~-~~tiiiv 144 (199)
T cd03283 83 GISYFYAELRRLKEIVEKAK-------------KGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNK-NTIGIIS 144 (199)
T ss_pred ccChHHHHHHHHHHHHHhcc-------------CCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHC-CCEEEEE
Confidence 21 11111111111 24999999999999999982 23445444 8888888
No 400
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.68 E-value=6.9e-17 Score=141.59 Aligned_cols=62 Identities=11% Similarity=-0.041 Sum_probs=45.3
Q ss_pred ccCCHHHHHHHHh--------cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCC-cEEEEc--------eeCC--EE
Q 024032 181 SWMSEGVHHNQRC--------LRSDDCALMKNDAEIDDLK------SSPKYVLRRVD-FAMVVS--------NIAE--IY 235 (273)
Q Consensus 181 ~~LSgGqkq~~r~--------l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g-~tiiiv--------~~ad--~i 235 (273)
..||+||||+..+ +.+|+++|+||||++||+. +.+..+.++.| .|+|++ ..+| +|
T Consensus 125 ~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~~~~v 204 (213)
T cd03277 125 HHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHEKMTV 204 (213)
T ss_pred hhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcccCceEE
Confidence 6899999996521 3799999999999999999 33444444324 467777 2444 78
Q ss_pred EEEeCCe
Q 024032 236 KALKAGD 242 (273)
Q Consensus 236 ~vl~~G~ 242 (273)
++|.+|+
T Consensus 205 ~~l~~g~ 211 (213)
T cd03277 205 LCVYNGP 211 (213)
T ss_pred EEEecCc
Confidence 8888886
No 401
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.67 E-value=1.7e-16 Score=137.55 Aligned_cols=136 Identities=13% Similarity=0.077 Sum_probs=84.7
Q ss_pred eeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhC-cc-CccEEEECCeeCCCCCccEEEEeccchhhhccCCccccccccc
Q 024032 89 QKGGMDIPPVITILLMGFSGSGKSSLVNLMYSV-LS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRG 166 (273)
Q Consensus 89 ~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl-~~-~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en~~ 166 (273)
-..++++.+|++++|+||||||||||+++|++. +. ..|.... . .+..++++.|.... +...++.
T Consensus 20 ~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~-~-----~~~~i~~~dqi~~~-------~~~~d~i- 85 (202)
T cd03243 20 VPNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVP-A-----ESASIPLVDRIFTR-------IGAEDSI- 85 (202)
T ss_pred EeeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCcc-c-----cccccCCcCEEEEE-------ecCcccc-
Confidence 344667778999999999999999999999954 32 4444321 1 11122222211111 1111111
Q ss_pred CCHHHHHHHHHHhcccCCHHHHHHHHh---cCCCCEEEEcCcCCCCCHHH---H----HHHHHhcCCcEEEEc-------
Q 024032 167 FNYNRVHEGLEELSSWMSEGVHHNQRC---LRSDDCALMKNDAEIDDLKS---S----PKYVLRRVDFAMVVS------- 229 (273)
Q Consensus 167 ~~~~~~~~~l~~~~~~LSgGqkq~~r~---l~~p~iLlLDEPts~LD~~~---~----l~~l~~~~g~tiiiv------- 229 (273)
..-.+.++.+++|...+ +.+|+++|||||++|+|+.. . ++.+.+. +.++|++
T Consensus 86 ----------~~~~s~~~~e~~~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~-~~~vi~~tH~~~~~ 154 (202)
T cd03243 86 ----------SDGRSTFMAELLELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEK-GCRTLFATHFHELA 154 (202)
T ss_pred ----------cCCceeHHHHHHHHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhc-CCeEEEECChHHHH
Confidence 11113456677664433 67999999999999999972 1 2334443 7888888
Q ss_pred eeCCEEEEEeCCeEeeecCh
Q 024032 230 NIAEIYKALKAGDSKPLDAT 249 (273)
Q Consensus 230 ~~ad~i~vl~~G~i~~~g~~ 249 (273)
..++++..++.|++...++.
T Consensus 155 ~~~~~~~~l~~~~~~~~~~~ 174 (202)
T cd03243 155 DLPEQVPGVKNLHMEELITT 174 (202)
T ss_pred HHhhcCCCeEEEEEEEEecC
Confidence 44677777888888777654
No 402
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.67 E-value=3.6e-16 Score=168.72 Aligned_cols=75 Identities=12% Similarity=0.037 Sum_probs=61.9
Q ss_pred ccCCHHHHHHHHh---cC----CCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEE--
Q 024032 181 SWMSEGVHHNQRC---LR----SDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKAL-- 238 (273)
Q Consensus 181 ~~LSgGqkq~~r~---l~----~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl-- 238 (273)
.+|||||.||.++ +. .+.++||||||.||++. +.+.+|... |.|||+| +.||+|+=|
T Consensus 1698 ~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~-g~tvivieH~~~~i~~aD~iidlgp 1776 (1809)
T PRK00635 1698 SSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSL-GHSVIYIDHDPALLKQADYLIEMGP 1776 (1809)
T ss_pred CccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHhCCEEEEcCC
Confidence 6899999998854 43 35799999999999999 335567655 9999999 458999888
Q ss_pred ----eCCeEeeecChhhhccCh
Q 024032 239 ----KAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 239 ----~~G~i~~~g~~~~l~~~~ 256 (273)
+.|+|++.|+|+++.+.+
T Consensus 1777 ~gG~~GG~iva~Gtp~~i~~~~ 1798 (1809)
T PRK00635 1777 GSGKTGGKILFSGPPKDISASK 1798 (1809)
T ss_pred CcccCCCEEEEEeCHHHHhhCC
Confidence 668999999999998654
No 403
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.66 E-value=1.3e-15 Score=129.90 Aligned_cols=128 Identities=16% Similarity=0.153 Sum_probs=75.6
Q ss_pred eeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-Cc-----cEEEECCee-CCC--CCccEEEEeccchhhhccCCcccc
Q 024032 91 GGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RS-----GLVLFAQTS-SGN--SSHTITMYMEEHNVMRSLQSGFCV 161 (273)
Q Consensus 91 is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~-----G~I~i~g~~-i~~--~~~~i~~v~q~~~~~~~~~~~~tv 161 (273)
..+...++.+.+|+||||||||+++.+|.=..- .+ +.-.+...+ ++. ....+...+.+... +++..
T Consensus 15 ~~~~~~~~~~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~---~~~~~-- 89 (178)
T cd03239 15 ETVVGGSNSFNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGGVKAGINSASVEITFDKSYF---LVLQG-- 89 (178)
T ss_pred CEEecCCCceEEEECCCCCCHHHHHHHHHHHcCcccccccCcchhhhcccccCCCCceEEEEEEEECceE---EecCC--
Confidence 333333334999999999999999999864332 11 111100011 111 11123333332210 11111
Q ss_pred cccccCCHHHHHHHHHHhcccCCHHHHHHH---Hhc-----CCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEE
Q 024032 162 YDSRGFNYNRVHEGLEELSSWMSEGVHHNQ---RCL-----RSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMV 227 (273)
Q Consensus 162 ~en~~~~~~~~~~~l~~~~~~LSgGqkq~~---r~l-----~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tii 227 (273)
+..++ ||+||+|+. +++ .+|+++|||||+++||+. +.+.++.++ |.|+|
T Consensus 90 ------~~~~~----------LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~-g~tiI 152 (178)
T cd03239 90 ------KVEQI----------LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKH-TSQFI 152 (178)
T ss_pred ------cCccc----------CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEE
Confidence 11111 999999976 322 689999999999999999 334555544 78888
Q ss_pred Ec-------eeCCEEEEEeC
Q 024032 228 VS-------NIAEIYKALKA 240 (273)
Q Consensus 228 iv-------~~ad~i~vl~~ 240 (273)
++ ..+|+++.+..
T Consensus 153 iiSH~~~~~~~adrvi~i~~ 172 (178)
T cd03239 153 VITLKKEMFENADKLIGVLF 172 (178)
T ss_pred EEECCHHHHhhCCeEEEEEE
Confidence 88 56799988864
No 404
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.65 E-value=2.9e-15 Score=149.49 Aligned_cols=75 Identities=9% Similarity=0.111 Sum_probs=60.0
Q ss_pred ccCCHHHHHHHHh---c----CCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEE--
Q 024032 181 SWMSEGVHHNQRC---L----RSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKAL-- 238 (273)
Q Consensus 181 ~~LSgGqkq~~r~---l----~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl-- 238 (273)
.+|||||.||..+ + ...-++||||||+||=+. +.+.+|..+ |.|||+| +.||+|+=|
T Consensus 821 tTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~-GnTViVIEHNLdVIk~AD~IIDLGP 899 (935)
T COG0178 821 TTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDK-GNTVIVIEHNLDVIKTADWIIDLGP 899 (935)
T ss_pred ccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecccceEeecCEEEEcCC
Confidence 6899999998744 3 344799999999999655 334566665 9999999 568988877
Q ss_pred ----eCCeEeeecChhhhccCh
Q 024032 239 ----KAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 239 ----~~G~i~~~g~~~~l~~~~ 256 (273)
+.|+|++.|+|+++.+.+
T Consensus 900 eGG~~GG~iva~GTPeeva~~~ 921 (935)
T COG0178 900 EGGDGGGEIVASGTPEEVAKVK 921 (935)
T ss_pred CCCCCCceEEEecCHHHHHhCc
Confidence 679999999999998643
No 405
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.65 E-value=2.2e-16 Score=139.28 Aligned_cols=134 Identities=10% Similarity=0.054 Sum_probs=89.0
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc--CccEEEECCeeCCCCCccEEEEeccchhhhccCCcccccccc
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS--RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSR 165 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~--~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en~ 165 (273)
.++++|+.+++++++|.||||+|||||++.++-..- ..|. +++.+...++ ....+.+..
T Consensus 20 ~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~la~~g~----------------~vpa~~~~~~---~~~~il~~~ 80 (222)
T cd03285 20 PNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIVLMAQIGC----------------FVPCDSADIP---IVDCILARV 80 (222)
T ss_pred EeeEEEeecCCeEEEEECCCCCChHHHHHHHHHHHHHHHhCC----------------CcCcccEEEe---ccceeEeee
Confidence 999999999999999999999999999999873211 2221 2222221110 000111111
Q ss_pred cCCHHHHHHHHHHhcccCCHHHHHHHH---h---cCCCCEEEEcCc---CCCCCHHHH----HHHHHhcCCcEEEEc---
Q 024032 166 GFNYNRVHEGLEELSSWMSEGVHHNQR---C---LRSDDCALMKND---AEIDDLKSS----PKYVLRRVDFAMVVS--- 229 (273)
Q Consensus 166 ~~~~~~~~~~l~~~~~~LSgGqkq~~r---~---l~~p~iLlLDEP---ts~LD~~~~----l~~l~~~~g~tiiiv--- 229 (273)
+... .....+|.|++++.+ + +.+|+++||||| |+++|+... ++.+.++.|.++|++
T Consensus 81 ~l~d--------~~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~~~~~~vlisTH~ 152 (222)
T cd03285 81 GASD--------SQLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIATQIKCFCLFATHF 152 (222)
T ss_pred cccc--------chhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHhcCCCeEEEEech
Confidence 1111 113568888887542 2 589999999999 899999833 355554347888888
Q ss_pred ----eeCCEEEEEeCCeEeeecC
Q 024032 230 ----NIAEIYKALKAGDSKPLDA 248 (273)
Q Consensus 230 ----~~ad~i~vl~~G~i~~~g~ 248 (273)
++||++..+++|++...+.
T Consensus 153 ~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 153 HELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred HHHHHHhhcCCCeEEEEEEEEEe
Confidence 5578999999999876553
No 406
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.63 E-value=6.9e-16 Score=139.80 Aligned_cols=129 Identities=15% Similarity=0.158 Sum_probs=90.8
Q ss_pred cEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC------CCccEEEEeccchhhhccCCcccccccccCCHHH
Q 024032 99 ITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------SSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNR 171 (273)
Q Consensus 99 e~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------~~~~i~~v~q~~~~~~~~~~~~tv~en~~~~~~~ 171 (273)
.-++|+||||||||||+++|+|++. .+|+|.++|+++.. ....+++++|. ... ...+|.+|-. +.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~-~~~----~r~~v~~~~~--k~- 183 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQH-DVG----IRTDVLDGCP--KA- 183 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccc-ccc----ccccccccch--HH-
Confidence 5789999999999999999999999 99999999998852 22234445553 322 2335665421 11
Q ss_pred HHHHHHHhcccCCHHHHHHHHhcCCCCEEEEcCcCCCCCHHHHHHHHHhcCCcEEEEc---------------------e
Q 024032 172 VHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVS---------------------N 230 (273)
Q Consensus 172 ~~~~l~~~~~~LSgGqkq~~r~l~~p~iLlLDEPts~LD~~~~l~~l~~~~g~tiiiv---------------------~ 230 (273)
.|+.+..++ .+|+++|+|||++.-+....++.+. + |.++|++ .
T Consensus 184 -------------~~~~~~i~~-~~P~villDE~~~~e~~~~l~~~~~-~-G~~vI~ttH~~~~~~~~~r~~~~~l~~~~ 247 (270)
T TIGR02858 184 -------------EGMMMLIRS-MSPDVIVVDEIGREEDVEALLEALH-A-GVSIIATAHGRDVEDLYKRPVFKELIENE 247 (270)
T ss_pred -------------HHHHHHHHh-CCCCEEEEeCCCcHHHHHHHHHHHh-C-CCEEEEEechhHHHHHHhChHHHHHHhcC
Confidence 133333333 5999999999987655445555554 3 8999988 2
Q ss_pred eCCEEEEEeCCeEeeecChhhhc
Q 024032 231 IAEIYKALKAGDSKPLDATKRLF 253 (273)
Q Consensus 231 ~ad~i~vl~~G~i~~~g~~~~l~ 253 (273)
.++|+++|++|+ ..|++++++
T Consensus 248 ~~~r~i~L~~~~--~~g~~~~i~ 268 (270)
T TIGR02858 248 AFERYVVLSRRK--GPGTVEAVY 268 (270)
T ss_pred ceEEEEEEecCC--CCCceeecc
Confidence 358999999887 677777765
No 407
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.61 E-value=1.1e-15 Score=144.45 Aligned_cols=162 Identities=16% Similarity=0.153 Sum_probs=100.2
Q ss_pred EEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEE-----------ECCeeCCC-
Q 024032 71 HKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVL-----------FAQTSSGN- 137 (273)
Q Consensus 71 ~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~-----------i~g~~i~~- 137 (273)
++..+|..++.. |..+- ..++|.++||+||||-||||.+|+|+|.+. .=|.-. |.|..+..
T Consensus 79 e~vHRYg~NgFk-----L~~LP-~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~Y 152 (591)
T COG1245 79 EVVHRYGVNGFK-----LYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNY 152 (591)
T ss_pred cceeeccCCceE-----EecCC-CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHH
Confidence 456677554422 22222 357899999999999999999999999876 655431 11211110
Q ss_pred ------CCccEEEEeccchhhhccCCcccccccccC-C-HHHHHHHHHHhc---------ccCCHHHHHHHHh----cCC
Q 024032 138 ------SSHTITMYMEEHNVMRSLQSGFCVYDSRGF-N-YNRVHEGLEELS---------SWMSEGVHHNQRC----LRS 196 (273)
Q Consensus 138 ------~~~~i~~v~q~~~~~~~~~~~~tv~en~~~-~-~~~~~~~l~~~~---------~~LSgGqkq~~r~----l~~ 196 (273)
-.-++..-+|-...+|.. ...+|.|-... + .....+.++.++ .+|||||-||.++ +++
T Consensus 153 F~~l~~g~~r~v~K~QYVd~iPk~-~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rd 231 (591)
T COG1245 153 FKKLYEGELRAVHKPQYVDLIPKV-VKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRD 231 (591)
T ss_pred HHHHHcCCcceecchHHHHHHHHH-hcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhcc
Confidence 111223333433333332 22344443111 0 012233333333 8899999998732 799
Q ss_pred CCEEEEcCcCCCCCHHHH------HHHHHhcCCcEEEEce--------eCCEEEEEeC
Q 024032 197 DDCALMKNDAEIDDLKSS------PKYVLRRVDFAMVVSN--------IAEIYKALKA 240 (273)
Q Consensus 197 p~iLlLDEPts~LD~~~~------l~~l~~~~g~tiiiv~--------~ad~i~vl~~ 240 (273)
++++++|||+|-||..+. ++++.+. +++|++|. ++|-|.++-.
T Consensus 232 ADvY~FDEpsSyLDi~qRl~~ar~Irel~~~-~k~ViVVEHDLavLD~lsD~vhI~YG 288 (591)
T COG1245 232 ADVYFFDEPSSYLDIRQRLNAARVIRELAED-GKYVIVVEHDLAVLDYLSDFVHILYG 288 (591)
T ss_pred CCEEEEcCCcccccHHHHHHHHHHHHHHhcc-CCeEEEEechHHHHHHhhheeEEEec
Confidence 999999999999999944 5677765 89999993 3577777743
No 408
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.59 E-value=3.8e-15 Score=139.66 Aligned_cols=148 Identities=16% Similarity=0.197 Sum_probs=101.7
Q ss_pred ceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCc--------c-CccEEEECCeeCCCCCccEEEEeccchhhhccCC
Q 024032 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVL--------S-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQS 157 (273)
Q Consensus 87 ~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~--------~-~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~ 157 (273)
+|+|+||++++|++++|+|+|||||||++++|.|.. + ++|.|.+--..+.. +++.+... .+.
T Consensus 398 vlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a------~iPge~Ep---~f~ 468 (593)
T COG2401 398 VLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSA------LIPGEYEP---EFG 468 (593)
T ss_pred eeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhh------ccCccccc---ccC
Confidence 499999999999999999999999999999999964 3 46666654332221 11111110 011
Q ss_pred cccccccccC---CHHHHHHHHHHhc-----------ccCCHHHHHHHHh----cCCCCEEEEcCcCCCCCHHH------
Q 024032 158 GFCVYDSRGF---NYNRVHEGLEELS-----------SWMSEGVHHNQRC----LRSDDCALMKNDAEIDDLKS------ 213 (273)
Q Consensus 158 ~~tv~en~~~---~~~~~~~~l~~~~-----------~~LSgGqkq~~r~----l~~p~iLlLDEPts~LD~~~------ 213 (273)
.-|+.+.... +.....+.+++++ +.||-|||.|.++ ...|.+++.||-.|.||+..
T Consensus 469 ~~tilehl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVAr 548 (593)
T COG2401 469 EVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVAR 548 (593)
T ss_pred chhHHHHHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHH
Confidence 2233333111 2233556666666 7899999987633 57899999999999999993
Q ss_pred HHHHHHhcCCcEEEEc--------ee-CCEEEEEeCCeE
Q 024032 214 SPKYVLRRVDFAMVVS--------NI-AEIYKALKAGDS 243 (273)
Q Consensus 214 ~l~~l~~~~g~tiiiv--------~~-ad~i~vl~~G~i 243 (273)
.+.+++++.|.|++++ .+ .|.++.+.=|.+
T Consensus 549 kiselaRe~giTlivvThrpEv~~AL~PD~li~vgYg~v 587 (593)
T COG2401 549 KISELAREAGITLIVVTHRPEVGNALRPDTLILVGYGKV 587 (593)
T ss_pred HHHHHHHHhCCeEEEEecCHHHHhccCCceeEEeecccc
Confidence 3567888889999988 22 477777665554
No 409
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.59 E-value=4.1e-15 Score=124.69 Aligned_cols=119 Identities=13% Similarity=0.091 Sum_probs=75.7
Q ss_pred eeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEEEEeccchhhhccCCcccccccccCCHH
Q 024032 92 GMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYN 170 (273)
Q Consensus 92 s~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en~~~~~~ 170 (273)
++.+.++.++.|+|||||||||+++.+....- .+|.+... ... +.++..+.... .+ +
T Consensus 15 ~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~-~~~-----~~g~~~~~~~~----~~---i--------- 72 (162)
T cd03227 15 DVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRR-SGV-----KAGCIVAAVSA----EL---I--------- 72 (162)
T ss_pred EEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhcc-Ccc-----cCCCcceeeEE----EE---e---------
Confidence 44555667999999999999999999876655 55555431 111 11111111000 00 0
Q ss_pred HHHHHHHHhcccCCHHHHHHHHh---c-----CCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------
Q 024032 171 RVHEGLEELSSWMSEGVHHNQRC---L-----RSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS------- 229 (273)
Q Consensus 171 ~~~~~l~~~~~~LSgGqkq~~r~---l-----~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv------- 229 (273)
.....||+||+|+.++ + .+|+++|||||++++|+. ..+.++..+ +.++|++
T Consensus 73 -------~~~~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~-~~~vii~TH~~~~~ 144 (162)
T cd03227 73 -------FTRLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK-GAQVIVITHLPELA 144 (162)
T ss_pred -------hheeeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHH
Confidence 0013399999987632 2 289999999999999999 234444444 7788888
Q ss_pred eeCCEEEEEeC
Q 024032 230 NIAEIYKALKA 240 (273)
Q Consensus 230 ~~ad~i~vl~~ 240 (273)
..+|+++.|..
T Consensus 145 ~~~d~~~~l~~ 155 (162)
T cd03227 145 ELADKLIHIKK 155 (162)
T ss_pred HhhhhEEEEEE
Confidence 45688888853
No 410
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.59 E-value=2e-15 Score=131.62 Aligned_cols=117 Identities=9% Similarity=0.063 Sum_probs=76.9
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc--CccEEEECCeeCCCCCccEEEEeccchhhhccCCcccccccc
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS--RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSR 165 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~--~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en~ 165 (273)
.++++|++++|++++|+||||+||||++++++++.- .-|. +++-. ...+++.++.
T Consensus 19 ~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~la~~G~----------------~vpa~-------~~~l~~~d~I 75 (204)
T cd03282 19 PNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIMAQIGC----------------FVPAE-------YATLPIFNRL 75 (204)
T ss_pred EeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHHHHcCC----------------Ccchh-------hcCccChhhe
Confidence 999999999999999999999999999999998642 2221 01111 1111223221
Q ss_pred cCCHHHHHHHHHHhcccCCHHHHHHHHh---cCCCCEEEEcCcCCCCCHH-------HHHHHHHhcCCcEEEEc
Q 024032 166 GFNYNRVHEGLEELSSWMSEGVHHNQRC---LRSDDCALMKNDAEIDDLK-------SSPKYVLRRVDFAMVVS 229 (273)
Q Consensus 166 ~~~~~~~~~~l~~~~~~LSgGqkq~~r~---l~~p~iLlLDEPts~LD~~-------~~l~~l~~~~g~tiiiv 229 (273)
-.... ..+-++.-.+.+|.|++|...+ +.+|+++|||||++|+|+. ..++.+.+. +.++|++
T Consensus 76 ~~~~~-~~d~~~~~~S~fs~e~~~~~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~-~~~~i~~ 147 (204)
T cd03282 76 LSRLS-NDDSMERNLSTFASEMSETAYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKK-ESTVFFA 147 (204)
T ss_pred eEecC-CccccchhhhHHHHHHHHHHHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhc-CCEEEEE
Confidence 00000 0001122225688999875533 6789999999999999997 234556555 8898888
No 411
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.58 E-value=1.8e-14 Score=130.76 Aligned_cols=59 Identities=12% Similarity=-0.035 Sum_probs=45.7
Q ss_pred cCCHHHHHHHHh-----c-C--CCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeC
Q 024032 182 WMSEGVHHNQRC-----L-R--SDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKA 240 (273)
Q Consensus 182 ~LSgGqkq~~r~-----l-~--~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~ 240 (273)
.|||||+||..+ + . +|+++||||||++||+. +.++++.+ +.|+|++ ..||++++|.+
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~--~~tii~isH~~~~~~~~d~~~~l~~ 247 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR--SHQVLCITHLPQVAAMADNHFLVEK 247 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC--CCEEEEEechHHHHHhcCcEEEEEE
Confidence 599999997622 2 2 99999999999999999 23444443 6788888 56899999987
Q ss_pred Ce
Q 024032 241 GD 242 (273)
Q Consensus 241 G~ 242 (273)
|.
T Consensus 248 ~~ 249 (276)
T cd03241 248 EV 249 (276)
T ss_pred ec
Confidence 64
No 412
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.55 E-value=2e-14 Score=126.30 Aligned_cols=142 Identities=12% Similarity=0.046 Sum_probs=85.1
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc--CccEEEECCeeCCCCCccEEEEeccchhhhccCCcccccccc
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS--RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSR 165 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~--~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en~ 165 (273)
.++++|+.++ ++++|+|||||||||++|++++..- ..|. .+......++++.+ + +..+++.|+.
T Consensus 21 ~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~------~vp~~~~~i~~~~~---i----~~~~~~~~~l 86 (216)
T cd03284 21 PNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLAQIGS------FVPASKAEIGVVDR---I----FTRIGASDDL 86 (216)
T ss_pred eeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHhccCC------eeccccceecceee---E----eccCCchhhh
Confidence 8999999887 9999999999999999999987532 2232 22222234444432 1 2333555543
Q ss_pred cCCHHHH-HHHHHHhcccCCHHHHHHHHhcCCCCEEEEcCc---CCCCCHHH----HHHHHHhcCCcEEEEc-------e
Q 024032 166 GFNYNRV-HEGLEELSSWMSEGVHHNQRCLRSDDCALMKND---AEIDDLKS----SPKYVLRRVDFAMVVS-------N 230 (273)
Q Consensus 166 ~~~~~~~-~~~l~~~~~~LSgGqkq~~r~l~~p~iLlLDEP---ts~LD~~~----~l~~l~~~~g~tiiiv-------~ 230 (273)
....... .+..+ + .+..+.+.+|+++||||| |+++|... .++.+.+..+.++|++ .
T Consensus 87 s~g~s~f~~e~~~-l--------~~~l~~~~~~~llllDEp~~gt~~lD~~~~~~~il~~l~~~~~~~vi~~TH~~~l~~ 157 (216)
T cd03284 87 AGGRSTFMVEMVE-T--------ANILNNATERSLVLLDEIGRGTSTYDGLSIAWAIVEYLHEKIGAKTLFATHYHELTE 157 (216)
T ss_pred ccCcchHHHHHHH-H--------HHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhccCCcEEEEeCcHHHHH
Confidence 2211000 00000 0 000112579999999999 88999863 3444544337788888 3
Q ss_pred eCCEEEEEeCCeEeeecChhhh
Q 024032 231 IAEIYKALKAGDSKPLDATKRL 252 (273)
Q Consensus 231 ~ad~i~vl~~G~i~~~g~~~~l 252 (273)
++|++..+++|++...++.+++
T Consensus 158 l~~~~~~v~~~~~~~~~~~~~l 179 (216)
T cd03284 158 LEGKLPRVKNFHVAVKEKGGGV 179 (216)
T ss_pred HhhcCCCeEEEEEEEEeeCCeE
Confidence 4566666677777665555444
No 413
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.49 E-value=5e-13 Score=121.03 Aligned_cols=63 Identities=13% Similarity=0.009 Sum_probs=42.9
Q ss_pred ccCCHHHHHHH---Hh----------cCCCCEEEEcCcCCCCCHHH--HHHHHHhcCCcEEEEc-------eeC---CEE
Q 024032 181 SWMSEGVHHNQ---RC----------LRSDDCALMKNDAEIDDLKS--SPKYVLRRVDFAMVVS-------NIA---EIY 235 (273)
Q Consensus 181 ~~LSgGqkq~~---r~----------l~~p~iLlLDEPts~LD~~~--~l~~l~~~~g~tiiiv-------~~a---d~i 235 (273)
..+|+||+|+. ++ ..+|+++||||||++||+.. .+....++.+.+++.+ ..| +++
T Consensus 182 ~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~q~ii~~~~~~~~~~~~~~~~~i 261 (270)
T cd03242 182 DFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRVQTFVTTTDLADFDALWLRRAQI 261 (270)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCCCEEEEeCCchhccchhccCccE
Confidence 34899999865 22 26999999999999999993 3333333334455554 234 578
Q ss_pred EEEeCCeE
Q 024032 236 KALKAGDS 243 (273)
Q Consensus 236 ~vl~~G~i 243 (273)
+.+++|++
T Consensus 262 ~~l~~g~i 269 (270)
T cd03242 262 FRVDAGTL 269 (270)
T ss_pred EEEeCcEE
Confidence 88888875
No 414
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.44 E-value=2.2e-13 Score=106.83 Aligned_cols=68 Identities=15% Similarity=0.048 Sum_probs=53.3
Q ss_pred ceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeCCC----CCccEEEEeccchhhhccCCccccc
Q 024032 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGN----SSHTITMYMEEHNVMRSLQSGFCVY 162 (273)
Q Consensus 87 ~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i~~----~~~~i~~v~q~~~~~~~~~~~~tv~ 162 (273)
+|++++|++++|++++|+||||||||||++++. +|.+.++|.++.. ...++..+.|+. . +..|++
T Consensus 4 aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~-----~G~i~~~g~di~~~~~~~~~~~~~~~~q~-l-----f~~ti~ 72 (107)
T cd00820 4 SLHGVLVDVYGKVGVLITGDSGIGKTELALELI-----KRKHRLVGDDNVEIREDSKDELIGRNPEL-G-----LEIRLR 72 (107)
T ss_pred EEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh-----CCeEEEeeEeHHHhhhhhcCCEEEEechh-c-----chhhHH
Confidence 399999999999999999999999999999987 7899999998853 223334444444 3 234788
Q ss_pred ccc
Q 024032 163 DSR 165 (273)
Q Consensus 163 en~ 165 (273)
+|.
T Consensus 73 ~Ni 75 (107)
T cd00820 73 LNI 75 (107)
T ss_pred hhc
Confidence 873
No 415
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.38 E-value=1.7e-12 Score=132.73 Aligned_cols=117 Identities=13% Similarity=0.161 Sum_probs=75.3
Q ss_pred eeeeEEcCC-cEEEEEcCCCChHHHHHHHHhhC-cc-CccE-EEECCeeCCCCCccEEEEeccchhhhccCCcccccccc
Q 024032 90 KGGMDIPPV-ITILLMGFSGSGKSSLVNLMYSV-LS-RSGL-VLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSR 165 (273)
Q Consensus 90 ~is~~i~~G-e~~aivGpnGsGKSTLl~ll~gl-~~-~~G~-I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en~ 165 (273)
.+++++..+ ++++|.||||+|||||||+|+|. +. ..|. |... .. ..++++.|...
T Consensus 313 p~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~-~~-----~~~~~~d~i~~--------------- 371 (771)
T TIGR01069 313 PFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPAN-EH-----SEIPYFEEIFA--------------- 371 (771)
T ss_pred eceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCC-cc-----ccccchhheee---------------
Confidence 368888887 89999999999999999999997 33 5552 2111 00 11122111110
Q ss_pred cCCHHHHHHHHHHhcccCCHHHHHHHHh---cCCCCEEEEcCcCCCCCHHH-------HHHHHHhcCCcEEEEcee
Q 024032 166 GFNYNRVHEGLEELSSWMSEGVHHNQRC---LRSDDCALMKNDAEIDDLKS-------SPKYVLRRVDFAMVVSNI 231 (273)
Q Consensus 166 ~~~~~~~~~~l~~~~~~LSgGqkq~~r~---l~~p~iLlLDEPts~LD~~~-------~l~~l~~~~g~tiiiv~~ 231 (273)
.+..+ +.+..-.++||+|+++..++ +.+|.++|||||++|+||.+ .++.+.+. |.++|+++|
T Consensus 372 ~i~~~---~si~~~LStfS~~m~~~~~il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~-g~~viitTH 443 (771)
T TIGR01069 372 DIGDE---QSIEQNLSTFSGHMKNISAILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLLKQ-NAQVLITTH 443 (771)
T ss_pred ecChH---hHHhhhhhHHHHHHHHHHHHHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhc-CCEEEEECC
Confidence 01111 12222246789999886644 56899999999999999992 23445443 888888833
No 416
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=5.9e-13 Score=125.79 Aligned_cols=174 Identities=15% Similarity=0.123 Sum_probs=103.0
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhC-c--cCccEEEECCeeCCC-C---
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSV-L--SRSGLVLFAQTSSGN-S--- 138 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl-~--~~~G~I~i~g~~i~~-~--- 138 (273)
.|.++|.+.+- .++.. +.+.|+.|-.|..+|+|||||-||||||+.|+.- + +..=.+++..+.+-. .
T Consensus 264 DIKiEnF~ISA--~Gk~L----FvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~A 337 (807)
T KOG0066|consen 264 DIKIENFDISA--QGKLL----FVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSA 337 (807)
T ss_pred cceeeeeeeec--cccee----eeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHH
Confidence 57777776665 45666 8899999999999999999999999999999853 2 233344444433210 0
Q ss_pred --------CccEEEEeccchhhhcc-CCccccccc----------ccC--CHHHHHHHHHHhc----------ccCCHHH
Q 024032 139 --------SHTITMYMEEHNVMRSL-QSGFCVYDS----------RGF--NYNRVHEGLEELS----------SWMSEGV 187 (273)
Q Consensus 139 --------~~~i~~v~q~~~~~~~~-~~~~tv~en----------~~~--~~~~~~~~l~~~~----------~~LSgGq 187 (273)
.++..++-....+...+ -...|+.+- .+. ...+++.+|.-++ ..+|||.
T Consensus 338 i~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGW 417 (807)
T KOG0066|consen 338 IDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGW 417 (807)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCce
Confidence 00000000000000000 001112111 011 1223344444444 5699999
Q ss_pred HHHH---Hh-cCCCCEEEEcCcCCCCCHHHH--HHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEee
Q 024032 188 HHNQ---RC-LRSDDCALMKNDAEIDDLKSS--PKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKP 245 (273)
Q Consensus 188 kq~~---r~-l~~p~iLlLDEPts~LD~~~~--l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~ 245 (273)
|-|+ |+ +.+|-+|.|||||+.||.... +..+.+--.+|.+|| ..|..|+.+++-++-.
T Consensus 418 RMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLLIVSHDQgFLD~VCtdIIHLD~qkLhy 489 (807)
T KOG0066|consen 418 RMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQGFLDSVCTDIIHLDNQKLHY 489 (807)
T ss_pred eeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhhheeEEEecccchHHHHHHHHhhhhhhhhhh
Confidence 7665 44 689999999999999999833 222222113588888 5678888998877754
No 417
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.37 E-value=9.4e-12 Score=109.87 Aligned_cols=117 Identities=13% Similarity=0.104 Sum_probs=71.2
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhC-cc-CccEEEECCeeCCCCCccEEEEeccchhhhccCCcccccccc
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSV-LS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSR 165 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl-~~-~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en~ 165 (273)
.++++|++.+|++++|.||||+||||+++++++. +. ..|...... .. .+.++.+= +..+...|+.
T Consensus 21 ~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~-~~-----~~~~~~~i-------~~~~~~~d~~ 87 (222)
T cd03287 21 PNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPAS-SA-----TLSIFDSV-------LTRMGASDSI 87 (222)
T ss_pred EEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcC-ce-----EEeccceE-------EEEecCcccc
Confidence 8999999999999999999999999999999994 44 788765432 11 12221111 1111112211
Q ss_pred cCC----HHHHHHHHHHhcccCCHHHHHHHHhcCCCCEEEEcCcCCCCCHH-------HHHHHHHhcCCcEEEEc
Q 024032 166 GFN----YNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLK-------SSPKYVLRRVDFAMVVS 229 (273)
Q Consensus 166 ~~~----~~~~~~~l~~~~~~LSgGqkq~~r~l~~p~iLlLDEPts~LD~~-------~~l~~l~~~~g~tiiiv 229 (273)
... ..++.+..+ ..+.+.++.++|||||.+|.|+. ..++.+.+..+.++|++
T Consensus 88 ~~~~StF~~e~~~~~~------------il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~ 150 (222)
T cd03287 88 QHGMSTFMVELSETSH------------ILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFV 150 (222)
T ss_pred ccccchHHHHHHHHHH------------HHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEE
Confidence 100 111111111 11225689999999998888765 23455554436788888
No 418
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.35 E-value=1.7e-12 Score=111.13 Aligned_cols=106 Identities=13% Similarity=0.160 Sum_probs=62.1
Q ss_pred EEEEEcCCCChHHHHHHHHhh-Ccc-CccEEEECCeeCCCCCccEEEEeccchhhhccCCcccccccccCCHHHHHHHHH
Q 024032 100 TILLMGFSGSGKSSLVNLMYS-VLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLE 177 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~g-l~~-~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en~~~~~~~~~~~l~ 177 (273)
+++|.||||+||||++|.++- .+- ..|....... -.++++-+-.. .+...++ +.
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~------~~~~~~d~il~-------~~~~~d~-----------~~ 56 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAES------AELPVFDRIFT-------RIGASDS-----------LA 56 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehh------eEecccceEEE-------EeCCCCc-----------hh
Confidence 368999999999999999983 333 4554322110 11111111000 0011111 11
Q ss_pred HhcccCCHHHHHHHHh---cCCCCEEEEcCcCCCCCHHH-------HHHHHHhcCCcEEEEc
Q 024032 178 ELSSWMSEGVHHNQRC---LRSDDCALMKNDAEIDDLKS-------SPKYVLRRVDFAMVVS 229 (273)
Q Consensus 178 ~~~~~LSgGqkq~~r~---l~~p~iLlLDEPts~LD~~~-------~l~~l~~~~g~tiiiv 229 (273)
.-.+.||+|++|..++ +.+|+++|+|||++|+|+.. .++.+.++.+.++|++
T Consensus 57 ~~~s~fs~~~~~l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~ 118 (185)
T smart00534 57 QGLSTFMVEMKETANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFA 118 (185)
T ss_pred ccccHHHHHHHHHHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 2225688888775544 45899999999999999982 1334443237788887
No 419
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.34 E-value=1.1e-11 Score=108.70 Aligned_cols=121 Identities=19% Similarity=0.138 Sum_probs=66.2
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhC--ccCccEEEECCeeCCCCCccEEEEeccchhhhccCCcccccccc
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSV--LSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSR 165 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl--~~~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en~ 165 (273)
-+|++++=..+.+++|.||||+|||||||.++.. +...|...... .-.++++.|....+ ....++.++.
T Consensus 19 pnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~------~~~~~~~d~i~~~l---~~~~si~~~~ 89 (213)
T cd03281 19 PNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPAD------SATIGLVDKIFTRM---SSRESVSSGQ 89 (213)
T ss_pred cceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcC------CcEEeeeeeeeeee---CCccChhhcc
Confidence 4445543222379999999999999999999853 23566654422 12345554543321 1112333221
Q ss_pred cCCHHHHHHHHHHhcccCCHHHHHHHHhcCCCCEEEEcCcCCCCCHH-------HHHHHHHhc-C-CcEEEEc
Q 024032 166 GFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLK-------SSPKYVLRR-V-DFAMVVS 229 (273)
Q Consensus 166 ~~~~~~~~~~l~~~~~~LSgGqkq~~r~l~~p~iLlLDEPts~LD~~-------~~l~~l~~~-~-g~tiiiv 229 (273)
.. ....++++. .....+.+|+++|||||++|+|+. ..++.+.++ . +.++|++
T Consensus 90 S~----f~~el~~l~--------~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~ 150 (213)
T cd03281 90 SA----FMIDLYQVS--------KALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVS 150 (213)
T ss_pred ch----HHHHHHHHH--------HHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 10 001111110 011226789999999999999986 234555543 1 2367777
No 420
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.30 E-value=1.4e-11 Score=116.09 Aligned_cols=140 Identities=14% Similarity=0.153 Sum_probs=92.4
Q ss_pred eeeeeeEEcCCc-----EEEEEcCCCChHHHHHHHHhhCcc-C-ccEEEECCeeCCCCCccEEEEeccchhhhccCCccc
Q 024032 88 IQKGGMDIPPVI-----TILLMGFSGSGKSSLVNLMYSVLS-R-SGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFC 160 (273)
Q Consensus 88 L~~is~~i~~Ge-----~~aivGpnGsGKSTLl~ll~gl~~-~-~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~t 160 (273)
+.+..+.|+.|+ ++..+|.||.||||++++++|.++ + .|+|-... ++|.+|.... .+..|
T Consensus 352 ~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~ln---------VSykpqkisp----K~~~t 418 (592)
T KOG0063|consen 352 VGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVLN---------VSYKPQKISP----KREGT 418 (592)
T ss_pred eeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCcccccc---------eeccccccCc----cccch
Confidence 778888999886 889999999999999999999887 5 44554332 2333332221 11223
Q ss_pred cccc-----------ccC-----CHHHHHHHHHHhcccCCHHHHHHHHh---c-CCCCEEEEcCcCCCCCHHHHH-----
Q 024032 161 VYDS-----------RGF-----NYNRVHEGLEELSSWMSEGVHHNQRC---L-RSDDCALMKNDAEIDDLKSSP----- 215 (273)
Q Consensus 161 v~en-----------~~~-----~~~~~~~~l~~~~~~LSgGqkq~~r~---l-~~p~iLlLDEPts~LD~~~~l----- 215 (273)
|++- ..+ ..-.++.++++-...||||+.||.+. + +.+++.+.|||.+-||..+.+
T Consensus 419 vR~ll~~kIr~ay~~pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~Askv 498 (592)
T KOG0063|consen 419 VRQLLHTKIRDAYMHPQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKV 498 (592)
T ss_pred HHHHHHHHhHhhhcCHHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHH
Confidence 3221 111 11223444444447899999998754 3 567999999999999999554
Q ss_pred -HHHHhcCCcEEEEc--------eeCCEEEEEeC
Q 024032 216 -KYVLRRVDFAMVVS--------NIAEIYKALKA 240 (273)
Q Consensus 216 -~~l~~~~g~tiiiv--------~~ad~i~vl~~ 240 (273)
+++.-...+|-++| -+|||+++.+.
T Consensus 499 ikRfilhakktafvVEhdfImaTYladrvivf~G 532 (592)
T KOG0063|consen 499 IKRFILHAKKTAFVVEHDFIMATYLADRVIVFEG 532 (592)
T ss_pred HHHHHHhccchhhhhhhHHHHHHhhcceeEEEec
Confidence 33221226777777 45799998864
No 421
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.29 E-value=3.6e-11 Score=104.96 Aligned_cols=147 Identities=14% Similarity=0.214 Sum_probs=72.9
Q ss_pred eeeeeEEcCCcEEEEEcCCCChHHHHHHHHh-hCccC---c-------cEEEECCeeCCCCCccEEEEeccchhhhcc-C
Q 024032 89 QKGGMDIPPVITILLMGFSGSGKSSLVNLMY-SVLSR---S-------GLVLFAQTSSGNSSHTITMYMEEHNVMRSL-Q 156 (273)
Q Consensus 89 ~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~-gl~~~---~-------G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~-~ 156 (273)
+...+.+.+| +++|+|||||||||++.+|. -+-.. + .-|...+..-......+...+++....... .
T Consensus 16 ~~~~~~~~~~-~~~i~G~NGsGKS~ileAi~~~l~~~~~~~~r~~~~~~lI~~~~~~~~~~~a~V~~~~~~~~~~~~~~~ 94 (220)
T PF02463_consen 16 KNAELSFSPG-LNVIVGPNGSGKSNILEAIEFVLGGRPSKSFRGSKLKDLINKSGSDQDSKSAEVELIFDNSDEEFELDK 94 (220)
T ss_dssp CEEEEETTSS-EEEEEESTTSSHHHHHHHHHHHTTSS-TTTTT-SSGGTCB--BTTB---SEEEEEEEEECTTEESSSSS
T ss_pred CeEEEecCCC-CEEEEcCCCCCHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccc
Confidence 4556666654 99999999999999999993 33211 0 111110000000111233333322210000 0
Q ss_pred Ccccc------------c-ccccCCHHHHHHHHHHhc---ccCCHHHHHHHHh--------cCCCCEEEEcCcCCCCCHH
Q 024032 157 SGFCV------------Y-DSRGFNYNRVHEGLEELS---SWMSEGVHHNQRC--------LRSDDCALMKNDAEIDDLK 212 (273)
Q Consensus 157 ~~~tv------------~-en~~~~~~~~~~~l~~~~---~~LSgGqkq~~r~--------l~~p~iLlLDEPts~LD~~ 212 (273)
....+ + ++.......+.+.+.... ..||||||....+ ....+++|||||.++||..
T Consensus 95 ~~~~i~r~~~~~~~~~~~in~~~~~~~~~~~~l~~~~i~~~~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~ 174 (220)
T PF02463_consen 95 KEIEISRRIDRKGRSEYKINGKKVRLKDLEELLPEVGISPEFLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQ 174 (220)
T ss_dssp SEEEEEEEEETTS-EEEEETTEEE-HHHHHHHHHCTTTTTTGS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 00000 0 112234455556665554 5799999865421 4678999999999999999
Q ss_pred H------HHHHHHhcCCcEEEEc-------eeCCEEEEE
Q 024032 213 S------SPKYVLRRVDFAMVVS-------NIAEIYKAL 238 (273)
Q Consensus 213 ~------~l~~l~~~~g~tiiiv-------~~ad~i~vl 238 (273)
. +++++.+ +.-+|++ ..||+.+.+
T Consensus 175 ~~~~l~~~l~~~~~--~~Q~ii~Th~~~~~~~a~~~~~v 211 (220)
T PF02463_consen 175 NRKRLADLLKELSK--QSQFIITTHNPEMFEDADKLIGV 211 (220)
T ss_dssp HHHHHHHHHHHHTT--TSEEEEE-S-HHHHTT-SEEEEE
T ss_pred cccccccccccccc--ccccccccccccccccccccccc
Confidence 2 3444432 3556666 456766443
No 422
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.26 E-value=2e-11 Score=126.62 Aligned_cols=73 Identities=10% Similarity=0.050 Sum_probs=61.5
Q ss_pred ccCCHHHHHHHHh----cCCC--CEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEE---
Q 024032 181 SWMSEGVHHNQRC----LRSD--DCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKAL--- 238 (273)
Q Consensus 181 ~~LSgGqkq~~r~----l~~p--~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl--- 238 (273)
.+|||||+||..+ ..+| +++||||||+|||+. +.++++.++ |.|||+| ..||++++|
T Consensus 486 ~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~-G~TVIvVeHd~~~i~~aD~vi~Lgpg 564 (924)
T TIGR00630 486 GTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDL-GNTVIVVEHDEETIRAADYVIDIGPG 564 (924)
T ss_pred CcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhC-CCEEEEEECCHHHHhhCCEEEEeccc
Confidence 6799999998733 4554 899999999999999 446667655 9999999 458999999
Q ss_pred ---eCCeEeeecChhhhcc
Q 024032 239 ---KAGDSKPLDATKRLFS 254 (273)
Q Consensus 239 ---~~G~i~~~g~~~~l~~ 254 (273)
++|+|+..|+++++..
T Consensus 565 aG~~~G~Iv~~g~~~el~~ 583 (924)
T TIGR00630 565 AGIHGGEVVASGTPEEILA 583 (924)
T ss_pred ccCCCCEEeeccCHHHHhc
Confidence 8999999999999864
No 423
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.25 E-value=2.4e-11 Score=126.32 Aligned_cols=74 Identities=9% Similarity=0.046 Sum_probs=62.1
Q ss_pred ccCCHHHHHHHHh----cCCC--CEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEE---
Q 024032 181 SWMSEGVHHNQRC----LRSD--DCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKAL--- 238 (273)
Q Consensus 181 ~~LSgGqkq~~r~----l~~p--~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl--- 238 (273)
.+|||||+||+++ ..+| +++||||||+|||+. +.++++.++ |.|||+| ..||+|++|
T Consensus 488 ~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~-G~TVIvVeH~~~~i~~aD~vi~Lgpg 566 (943)
T PRK00349 488 GTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDL-GNTLIVVEHDEDTIRAADYIVDIGPG 566 (943)
T ss_pred hhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHhCCEEEEeccc
Confidence 6799999998733 4565 999999999999999 446667654 9999999 448999999
Q ss_pred ---eCCeEeeecChhhhccC
Q 024032 239 ---KAGDSKPLDATKRLFSA 255 (273)
Q Consensus 239 ---~~G~i~~~g~~~~l~~~ 255 (273)
++|+++..|+++++...
T Consensus 567 aG~~~G~iv~~g~~~e~~~~ 586 (943)
T PRK00349 567 AGVHGGEVVASGTPEEIMKN 586 (943)
T ss_pred cCCCCCEEeeccCHHHHhcC
Confidence 99999999999998654
No 424
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.21 E-value=7.7e-11 Score=113.52 Aligned_cols=47 Identities=17% Similarity=0.203 Sum_probs=43.5
Q ss_pred ceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCee
Q 024032 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTS 134 (273)
Q Consensus 87 ~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~ 134 (273)
+++++ |.+.+|++++|+|+||+|||||+++|+|+.+ +.|.|.+.|+.
T Consensus 148 vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Ger 195 (438)
T PRK07721 148 AIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGER 195 (438)
T ss_pred hhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecC
Confidence 39999 9999999999999999999999999999999 99999986554
No 425
>PRK00064 recF recombination protein F; Reviewed
Probab=99.20 E-value=3.4e-10 Score=106.78 Aligned_cols=34 Identities=24% Similarity=0.514 Sum_probs=30.4
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCc
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
++++++++.+| +.+|+||||||||||+.+|..+.
T Consensus 14 ~~~~~l~~~~~-~~~i~G~NgsGKT~lleai~~l~ 47 (361)
T PRK00064 14 YEELDLELSPG-VNVLVGENGQGKTNLLEAIYLLA 47 (361)
T ss_pred ccceEEEecCC-eEEEECCCCCCHHHHHHHHHHhC
Confidence 77888999888 99999999999999999998644
No 426
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.13 E-value=5.4e-10 Score=98.44 Aligned_cols=121 Identities=13% Similarity=0.133 Sum_probs=68.7
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc--CccEEEECCeeCCCCCccEEEEeccchhhhccCCcccccccc
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS--RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSR 165 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~--~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en~ 165 (273)
-++++|+.++|++++|.||||+||||+++.+++..- ..|.- +.....++..+ ..+ +..+...|+.
T Consensus 20 ~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~------vpa~~~~i~~~---~~i----~~~~~~~d~~ 86 (218)
T cd03286 20 PNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMD------VPAKSMRLSLV---DRI----FTRIGARDDI 86 (218)
T ss_pred EeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCCc------cCccccEeccc---cEE----EEecCccccc
Confidence 899999999999999999999999999999998643 33321 11101111111 011 1111222221
Q ss_pred cCCHHHHHHHHHHhcccCCHHHHHHHHhcCCCCEEEEcCcCCCCCHHH-------HHHHHHhcCCcEEEEc
Q 024032 166 GFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKS-------SPKYVLRRVDFAMVVS 229 (273)
Q Consensus 166 ~~~~~~~~~~l~~~~~~LSgGqkq~~r~l~~p~iLlLDEPts~LD~~~-------~l~~l~~~~g~tiiiv 229 (273)
.........-+.++ +.-.+.+.+|.++|||||++|+++.+ .++.+.+..+.+++++
T Consensus 87 ~~~~StF~~e~~~~--------~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~ 149 (218)
T cd03286 87 MKGESTFMVELSET--------ANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFS 149 (218)
T ss_pred ccCcchHHHHHHHH--------HHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 11100000000100 00112257899999999999999982 2455554337788888
No 427
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=99.12 E-value=5.3e-11 Score=114.62 Aligned_cols=49 Identities=24% Similarity=0.292 Sum_probs=44.3
Q ss_pred ceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-Ccc-EEEECCeeCCC
Q 024032 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSG-LVLFAQTSSGN 137 (273)
Q Consensus 87 ~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G-~I~i~g~~i~~ 137 (273)
+|++|||++++||+++|+|||||||||||+ +|+.. ++| +|.++|.++..
T Consensus 21 vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~ 71 (504)
T TIGR03238 21 ILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFS 71 (504)
T ss_pred HHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCC
Confidence 499999999999999999999999999999 67766 666 79999998864
No 428
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.07 E-value=1.5e-09 Score=97.36 Aligned_cols=148 Identities=11% Similarity=0.093 Sum_probs=83.7
Q ss_pred eEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-Ccc--EEEEC--Ce---eCCCCCccE--EEEecc---chhhhcc--CC
Q 024032 93 MDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSG--LVLFA--QT---SSGNSSHTI--TMYMEE---HNVMRSL--QS 157 (273)
Q Consensus 93 ~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G--~I~i~--g~---~i~~~~~~i--~~v~q~---~~~~~~~--~~ 157 (273)
+.+.+|+.++|+||+|+|||||++.|++.+. ..+ .+++. ++ ++.+..+.+ ..+..+ +...... ..
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~ 90 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEM 90 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHH
Confidence 5788999999999999999999999999876 422 32321 11 111111111 111111 1110000 00
Q ss_pred ccccccc---cc------C-CHHHHHHHHH----HhcccCCHHH--------HHHH-H--h-cCCCCEEEEcCcCCCCCH
Q 024032 158 GFCVYDS---RG------F-NYNRVHEGLE----ELSSWMSEGV--------HHNQ-R--C-LRSDDCALMKNDAEIDDL 211 (273)
Q Consensus 158 ~~tv~en---~~------~-~~~~~~~~l~----~~~~~LSgGq--------kq~~-r--~-l~~p~iLlLDEPts~LD~ 211 (273)
..+..++ .+ + +-.+..++.+ ..+..+|||+ +|+. + + +++++|.+| ||+.+|.
T Consensus 91 ~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~ 168 (249)
T cd01128 91 VLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDT 168 (249)
T ss_pred HHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecC
Confidence 0011110 00 0 1112222222 2337789999 8876 3 3 579999999 9999996
Q ss_pred H---H-H-HHHHHhcCCcEEEEc-------eeCCEEEEEeCCeE
Q 024032 212 K---S-S-PKYVLRRVDFAMVVS-------NIAEIYKALKAGDS 243 (273)
Q Consensus 212 ~---~-~-l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i 243 (273)
. . . +..+.. .+.|.|++ .++|.|.||+.|.+
T Consensus 169 ~~~~~~~i~~~~~~-~~~~~ivls~~la~~~~~paI~vl~s~sr 211 (249)
T cd01128 169 GSRMDDVIFEEFKG-TGNMELVLDRRLAERRIFPAIDILKSGTR 211 (249)
T ss_pred CCcccchHHHHHhc-CCCcEEEEchHHhhCCCCCeEEEcCCCCc
Confidence 4 1 2 334443 25666666 66799999999997
No 429
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.07 E-value=1e-09 Score=112.64 Aligned_cols=114 Identities=15% Similarity=0.217 Sum_probs=67.7
Q ss_pred eeeEEc-CCcEEEEEcCCCChHHHHHHHHhhCcc--CccEE-EECCeeCCCCCccEEEEeccchhhhccCCccccccccc
Q 024032 91 GGMDIP-PVITILLMGFSGSGKSSLVNLMYSVLS--RSGLV-LFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRG 166 (273)
Q Consensus 91 is~~i~-~Ge~~aivGpnGsGKSTLl~ll~gl~~--~~G~I-~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en~~ 166 (273)
.++.+. .+.++.|.|||++||||+||.++...- ..|.- ... ....++++.+ ++-..+
T Consensus 319 ndi~l~~~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~------~~~~i~~~~~-------------i~~~ig 379 (782)
T PRK00409 319 KDISLGFDKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPAN------EPSEIPVFKE-------------IFADIG 379 (782)
T ss_pred ceeEECCCceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccC------CCccccccce-------------EEEecC
Confidence 345554 456899999999999999999975421 33311 100 0001111100 000001
Q ss_pred CCHHHHHHHHHHhcccCCHHHHHHHHh---cCCCCEEEEcCcCCCCCHHH-------HHHHHHhcCCcEEEEc
Q 024032 167 FNYNRVHEGLEELSSWMSEGVHHNQRC---LRSDDCALMKNDAEIDDLKS-------SPKYVLRRVDFAMVVS 229 (273)
Q Consensus 167 ~~~~~~~~~l~~~~~~LSgGqkq~~r~---l~~p~iLlLDEPts~LD~~~-------~l~~l~~~~g~tiiiv 229 (273)
+.+ .++.-.++||+|++|+.++ +.+|+++|||||++|+||.+ .+..+.+. |.++|++
T Consensus 380 -~~~----si~~~lStfS~~m~~~~~Il~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~-~~~vIit 446 (782)
T PRK00409 380 -DEQ----SIEQSLSTFSGHMTNIVRILEKADKNSLVLFDELGAGTDPDEGAALAISILEYLRKR-GAKIIAT 446 (782)
T ss_pred -Ccc----chhhchhHHHHHHHHHHHHHHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHC-CCEEEEE
Confidence 011 1222336789999887644 67899999999999999982 23445444 7888888
No 430
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.05 E-value=2e-09 Score=95.45 Aligned_cols=38 Identities=32% Similarity=0.413 Sum_probs=31.2
Q ss_pred EEcCCcEEEEEcCCCChHHHH-HHHHhhCcc-CccEEEEC
Q 024032 94 DIPPVITILLMGFSGSGKSSL-VNLMYSVLS-RSGLVLFA 131 (273)
Q Consensus 94 ~i~~Ge~~aivGpnGsGKSTL-l~ll~gl~~-~~G~I~i~ 131 (273)
.+++|+++.|+|||||||||| ++.+.++.+ ....+++.
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~ 59 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 478999999999999999999 799998766 44555554
No 431
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.04 E-value=4.8e-10 Score=103.51 Aligned_cols=145 Identities=10% Similarity=0.083 Sum_probs=92.0
Q ss_pred eeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCC--C--ccEEEEeccchhhhccCCcccccccc
Q 024032 91 GGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNS--S--HTITMYMEEHNVMRSLQSGFCVYDSR 165 (273)
Q Consensus 91 is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~--~--~~i~~v~q~~~~~~~~~~~~tv~en~ 165 (273)
+++.++.|+.++|+||+|||||||+++|+++++ ..|.+.+.. ..++ . ..+.++.+... ....
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied--~~El~~~~~~~~~l~~~~~~-----------~~~~ 203 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIED--TREIFLPHPNYVHLFYSKGG-----------QGLA 203 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcC--ccccCCCCCCEEEEEecCCC-----------CCcC
Confidence 446788999999999999999999999999999 888888753 2221 1 11211111100 0000
Q ss_pred cCCHHHHHHHHHHhcccCCHHHHHHHHhcCCCCEEEEcCcCCCCCHHHHHHHHHhcCCc-EEEEcee-------CCEEEE
Q 024032 166 GFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDF-AMVVSNI-------AEIYKA 237 (273)
Q Consensus 166 ~~~~~~~~~~l~~~~~~LSgGqkq~~r~l~~p~iLlLDEPts~LD~~~~l~~l~~~~g~-tiiiv~~-------ad~i~v 237 (273)
..+. .+.+.. .+-.+|+++++|||.+. +....++.+.. |. +++.+-| .+|+..
T Consensus 204 ~~~~---~~~l~~-------------~Lr~~pd~ii~gE~r~~-e~~~~l~a~~~--g~~~~i~T~Ha~~~~~~~~Rl~~ 264 (308)
T TIGR02788 204 KVTP---KDLLQS-------------CLRMRPDRIILGELRGD-EAFDFIRAVNT--GHPGSITTLHAGSPEEAFEQLAL 264 (308)
T ss_pred ccCH---HHHHHH-------------HhcCCCCeEEEeccCCH-HHHHHHHHHhc--CCCeEEEEEeCCCHHHHHHHHHH
Confidence 1111 111111 12469999999999972 33355565553 55 4455533 377888
Q ss_pred EeCCeEeeecChhhhccChhhHHHhCCceEE
Q 024032 238 LKAGDSKPLDATKRLFSAPGLRKCSKISFCI 268 (273)
Q Consensus 238 l~~G~i~~~g~~~~l~~~~~l~~~~~~~~~~ 268 (273)
|..|++...|.+.+.+ .+.+...|+..+.+
T Consensus 265 l~~~~~~~~g~~~~~~-~~~i~~~~d~ii~~ 294 (308)
T TIGR02788 265 MVKSSQAGLGLDFAYI-VKLVREVIDIVVQI 294 (308)
T ss_pred HhhccccccCCCHHHH-HHHHHHhCCEEEEE
Confidence 8889888888888887 46677888765544
No 432
>PRK13695 putative NTPase; Provisional
Probab=99.04 E-value=9.5e-11 Score=99.03 Aligned_cols=136 Identities=16% Similarity=0.209 Sum_probs=75.7
Q ss_pred EEEEEcCCCChHHHHHHHHhhCccCccEEEECCe---eCCCCCccEEEEeccchhhhccCCcccccccccC-CHHHHHHH
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQT---SSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGF-NYNRVHEG 175 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~---~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en~~~-~~~~~~~~ 175 (273)
.++|+|++|||||||++.+++.+...|. .+.|. ++....+..++...+... . ........+. +.. .
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~G~-~~~g~~~~~~~~~~~~~~~~~~~~~~--~---~~~~l~~~~~~~~~----~ 71 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEEGY-KVGGFYTEEVREGGKRIGFKIIDLDT--G---EEGILARVGFPSRP----R 71 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCC-eEEEEEcHHHHhcCCccceEEEEcCC--C---CeEEccccCCCCCC----c
Confidence 4789999999999999998876543342 22111 111111122222211000 0 0000000000 000 0
Q ss_pred HHHhcccCCHHHHHHH----HhcCCCCEEEEcC--cCCCCCHH--HHHHHHHhcCCcEEEEc-------eeCCEEEEEeC
Q 024032 176 LEELSSWMSEGVHHNQ----RCLRSDDCALMKN--DAEIDDLK--SSPKYVLRRVDFAMVVS-------NIAEIYKALKA 240 (273)
Q Consensus 176 l~~~~~~LSgGqkq~~----r~l~~p~iLlLDE--Pts~LD~~--~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~ 240 (273)
+......+|++++-.. .++.+|+++++|| |+.++|+. +.+..+.+. +.++|++ ..+|+|..+.+
T Consensus 72 ~~~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~~~-~~~~i~v~h~~~~~~~~~~i~~~~~ 150 (174)
T PRK13695 72 VGKYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVLDS-EKPVIATLHRRSVHPFVQEIKSRPG 150 (174)
T ss_pred eeeEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHHhC-CCeEEEEECchhhHHHHHHHhccCC
Confidence 1112245888886543 2367999999999 66677765 556666544 8888888 34689999999
Q ss_pred CeEeee
Q 024032 241 GDSKPL 246 (273)
Q Consensus 241 G~i~~~ 246 (273)
|+|...
T Consensus 151 ~~i~~~ 156 (174)
T PRK13695 151 GRVYEL 156 (174)
T ss_pred cEEEEE
Confidence 998764
No 433
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.03 E-value=4.7e-10 Score=97.60 Aligned_cols=24 Identities=25% Similarity=0.523 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHH-HHHhhCcc
Q 024032 100 TILLMGFSGSGKSSLV-NLMYSVLS 123 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl-~ll~gl~~ 123 (273)
.++|+|+||||||||+ +.+.|...
T Consensus 11 kv~liG~~g~GKTtLi~~~~~~~~~ 35 (215)
T PTZ00132 11 KLILVGDGGVGKTTFVKRHLTGEFE 35 (215)
T ss_pred eEEEECCCCCCHHHHHHHHHhCCCC
Confidence 5799999999999999 68888754
No 434
>PRK14079 recF recombination protein F; Provisional
Probab=99.03 E-value=5.3e-09 Score=98.27 Aligned_cols=65 Identities=14% Similarity=0.045 Sum_probs=46.0
Q ss_pred ccCCHHHHHHHHh----c---------CCCCEEEEcCcCCCCCHHHH--HHH-HHhcCCcEEEEc-----eeCCEEEEEe
Q 024032 181 SWMSEGVHHNQRC----L---------RSDDCALMKNDAEIDDLKSS--PKY-VLRRVDFAMVVS-----NIAEIYKALK 239 (273)
Q Consensus 181 ~~LSgGqkq~~r~----l---------~~p~iLlLDEPts~LD~~~~--l~~-l~~~~g~tiiiv-----~~ad~i~vl~ 239 (273)
..+|+||+++..+ + .+|+++|||||+++||+... +.+ +... . -++++ ..+++++.+.
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~-~-q~~it~t~~~~~~~~~~~~~ 339 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL-P-QAIVAGTEAPPGAALTLRIE 339 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC-C-cEEEEcCCCCCCCceEEEEe
Confidence 4589999875411 2 68999999999999999832 333 3332 2 34444 6789999999
Q ss_pred CCeEeeec
Q 024032 240 AGDSKPLD 247 (273)
Q Consensus 240 ~G~i~~~g 247 (273)
+|++....
T Consensus 340 ~~~~~~~~ 347 (349)
T PRK14079 340 AGVFTPEA 347 (349)
T ss_pred ccEecCCC
Confidence 99876443
No 435
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.89 E-value=1.6e-08 Score=86.62 Aligned_cols=62 Identities=5% Similarity=0.035 Sum_probs=42.5
Q ss_pred ccCCHHHHHHH---HhcCCCCEEEEcCcCCCCCHHHH------HHHHHhcCCcEEEEceeC--------CEEEEEeCCeE
Q 024032 181 SWMSEGVHHNQ---RCLRSDDCALMKNDAEIDDLKSS------PKYVLRRVDFAMVVSNIA--------EIYKALKAGDS 243 (273)
Q Consensus 181 ~~LSgGqkq~~---r~l~~p~iLlLDEPts~LD~~~~------l~~l~~~~g~tiiiv~~a--------d~i~vl~~G~i 243 (273)
...|.||---. +...+.-+.|||||-++|.|..+ ++.+.+. |.-+||++|. -.|+-++.+.+
T Consensus 128 h~~SHGEsf~~i~~~rf~~~GiYiLDEPEa~LSp~RQlella~l~~la~s-GaQ~IiATHSPiLlAiP~A~I~~~~~~g~ 206 (233)
T COG3910 128 HHMSHGESFLAIFHNRFNGQGIYILDEPEAALSPSRQLELLAILRDLADS-GAQIIIATHSPILLAIPGAEIYEISESGI 206 (233)
T ss_pred hhhccchHHHHHHHHHhccCceEEecCccccCCHHHHHHHHHHHHHHHhc-CCeEEEEecChhheeCCCcEEEEEecCCc
Confidence 45788884311 33678889999999999999944 3455555 8778888554 45555555543
No 436
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.80 E-value=1.7e-08 Score=97.29 Aligned_cols=81 Identities=12% Similarity=0.095 Sum_probs=65.3
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECC---eeCCC--
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQ---TSSGN-- 137 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g---~~i~~-- 137 (273)
.+.++.++++..|..| ..+ ++.++ .+.+|++++|+||||+|||||+++|+++.+ +.|.|.+.| .++..
T Consensus 137 p~~~~r~~v~~~l~TG-i~a----ID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~ 210 (450)
T PRK06002 137 PPAMTRARVETGLRTG-VRV----IDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFL 210 (450)
T ss_pred CCCeEeecceEEcCCC-cEE----eeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHh
Confidence 4578899999999765 344 88885 999999999999999999999999999998 889988854 44431
Q ss_pred -------CCccEEEEeccch
Q 024032 138 -------SSHTITMYMEEHN 150 (273)
Q Consensus 138 -------~~~~i~~v~q~~~ 150 (273)
.++.+++++|...
T Consensus 211 ~~~l~~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 211 EDTLADNLKKAVAVVATSDE 230 (450)
T ss_pred HHHHHHhhCCeEEEEEcCCC
Confidence 2356888888554
No 437
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.80 E-value=5.2e-09 Score=100.47 Aligned_cols=156 Identities=14% Similarity=0.106 Sum_probs=94.9
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEEE
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~~ 144 (273)
.++-+.++..|..| ..+ ++.+ |.+.+|+.++|+|+||+|||||+++|++..+ +.|.|.+.|+...+.+..+..
T Consensus 130 ~~~r~~i~~~l~TG-ira----ID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg~ev~e~~~~ 203 (432)
T PRK06793 130 AFEREEITDVFETG-IKS----IDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERGREVKDFIRK 203 (432)
T ss_pred chheechhhccCCC-CEE----Eecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCcccHHHHHHH
Confidence 45556666666544 233 7774 9999999999999999999999999999998 889887776653221110000
Q ss_pred EeccchhhhccCCcccccccccCCHHHHHHHHHHhcccCCHHHHHHH---Hh--------cCCCCEEEEcCcCCCCCHHH
Q 024032 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQ---RC--------LRSDDCALMKNDAEIDDLKS 213 (273)
Q Consensus 145 v~q~~~~~~~~~~~~tv~en~~~~~~~~~~~l~~~~~~LSgGqkq~~---r~--------l~~p~iLlLDEPts~LD~~~ 213 (273)
..... +..+..+ + ..-..-|.|+|++. ++ ..++-++++|+||...|+..
T Consensus 204 ~l~~~----------------gl~~tvv---v-~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~r 263 (432)
T PRK06793 204 ELGEE----------------GMRKSVV---V-VATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADARR 263 (432)
T ss_pred Hhhhc----------------ccceeEE---E-EECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHHH
Confidence 00000 0000000 0 00145677776643 11 25788999999999999985
Q ss_pred HHHHHHhc---CCcEEEEc----eeCCEEEEEeCCeEeeec
Q 024032 214 SPKYVLRR---VDFAMVVS----NIAEIYKALKAGDSKPLD 247 (273)
Q Consensus 214 ~l~~l~~~---~g~tiiiv----~~ad~i~vl~~G~i~~~g 247 (273)
.+..+..+ .|.+..+. ++++|....++|.|....
T Consensus 264 eisl~~~e~p~~G~~~~~~s~l~~L~ERag~~~~GSiT~~~ 304 (432)
T PRK06793 264 SVDIAVKELPIGGKTLLMESYMKKLLERSGKTQKGSITGIY 304 (432)
T ss_pred HHHHHhcCCCCCCeeeeeeccchhHHHHhccCCCcceEEEE
Confidence 44333211 15555443 555666666677776543
No 438
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.76 E-value=1.9e-08 Score=95.56 Aligned_cols=94 Identities=12% Similarity=-0.008 Sum_probs=69.8
Q ss_pred chhhhhhhhhhccchh----hhhhhhHHHHHHHhchhhh---ccCCCCceEEEEEEEEeecCCeeeecccee--------
Q 024032 25 SAAKFDECVKLKLDLP----NVSTLTPRLRVLREMERLA---LIAPDGLNELRHKFLSYRSGDFWIPIGGIQ-------- 89 (273)
Q Consensus 25 ~~~~~~~~~~~~~~~~----~~~~~~~r~~~~~~~~~~~---~~~~~~~i~~~~v~~~y~~g~~~v~~~~L~-------- 89 (273)
|+.-...+..-..+.- ++....+|+.++++.++.. .....+.++|+|+++.|+.. +.+ |+
T Consensus 82 s~~~i~~~~lr~gd~v~g~~R~~~~~ER~~~Ll~v~~vn~~~~e~~~~ri~Fe~LTf~YP~e-r~~----Le~~~~~~~~ 156 (415)
T TIGR00767 82 SPSQIRRFNLRTGDTIEGQIRSPKEGERYFALLKVESVNGDDPEKAKNRVLFENLTPLYPNE-RLR----LETSTEDLST 156 (415)
T ss_pred CHHHHHhcCCCCCCEEEEEEeccccHhHHHHHhCCCccCCCCccccCCCeEEEEeeecCCCc-cce----eecCccccce
Confidence 4444444444443332 3456788999998876542 22234679999999999753 355 86
Q ss_pred ---eeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 90 ---KGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 90 ---~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
|+.+.|.+|+.++|+||+|+|||||++.|+..+.
T Consensus 157 R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 157 RVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred eeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 9999999999999999999999999999998765
No 439
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.70 E-value=7e-08 Score=97.40 Aligned_cols=75 Identities=12% Similarity=0.109 Sum_probs=61.2
Q ss_pred ccCCHHHHHHHHhcC------CCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEE---
Q 024032 181 SWMSEGVHHNQRCLR------SDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKAL--- 238 (273)
Q Consensus 181 ~~LSgGqkq~~r~l~------~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl--- 238 (273)
.+|||||.||.|+++ --=+++||||+.||=+. +.++.++.. |.|+|+| ..||+|+=|
T Consensus 480 ~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDl-GNTviVVEHDedti~~AD~iIDiGPg 558 (935)
T COG0178 480 GTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDL-GNTVIVVEHDEDTIRAADHIIDIGPG 558 (935)
T ss_pred CCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhc-CCeEEEEecCHHHHhhcCEEEeeCCC
Confidence 789999999987732 12489999999999777 335666554 9999999 568999776
Q ss_pred ---eCCeEeeecChhhhccCh
Q 024032 239 ---KAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 239 ---~~G~i~~~g~~~~l~~~~ 256 (273)
+.|+|++.|+++++++++
T Consensus 559 AG~~GGeIv~~Gtp~~i~~~~ 579 (935)
T COG0178 559 AGEHGGEIVAEGTPEELLANP 579 (935)
T ss_pred CCcCCCEEEEccCHHHHHhCC
Confidence 789999999999999876
No 440
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.69 E-value=1.9e-08 Score=86.06 Aligned_cols=46 Identities=22% Similarity=0.347 Sum_probs=40.9
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCe
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQT 133 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~ 133 (273)
..-+.+.+++|+.++|+||||||||||+++|+|+++ +.|.|.+.+.
T Consensus 15 ~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~ 61 (186)
T cd01130 15 AAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDT 61 (186)
T ss_pred HHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCc
Confidence 444567789999999999999999999999999999 8999998764
No 441
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.68 E-value=2.4e-08 Score=85.90 Aligned_cols=102 Identities=18% Similarity=0.215 Sum_probs=55.6
Q ss_pred EEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeCCCCCccEEEEeccchhhhccCCcccccccc-cCCHHHHHHHHHH
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSR-GFNYNRVHEGLEE 178 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en~-~~~~~~~~~~l~~ 178 (273)
++||.||||||||||.+.|.+++. .|.+.+.+.+.-. ...... +... . ....+++. .++.+...+.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~-~~~~~v~~~D~~~--~~~~~~--~~~~----~-~~~~~~~~~~~~~~~~~~~l~~ 70 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG-NPKVVIISQDSYY--KDLSHE--ELEE----R-KNNNYDHPDAFDFDLLISHLQD 70 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC-CCCeEEEEecccc--cccccc--cHHH----h-ccCCCCCCCcccHHHHHHHHHH
Confidence 579999999999999999999873 3334333332100 000000 0000 0 00011111 1233444455554
Q ss_pred hc---------ccCCHHHHHHHHh-cCCCCEEEEcCcCCCCCH
Q 024032 179 LS---------SWMSEGVHHNQRC-LRSDDCALMKNDAEIDDL 211 (273)
Q Consensus 179 ~~---------~~LSgGqkq~~r~-l~~p~iLlLDEPts~LD~ 211 (273)
+. ..+|.|+++.... +..++++|+|.|+.+.++
T Consensus 71 l~~~~~~~~p~~d~~~~~~~~~~~~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 71 LKNGKSVEIPVYDFKTHSRLKETVTVYPADVIILEGILALYDK 113 (198)
T ss_pred HHCCCCEeccccccccCcccCCceecCCCCEEEEechhhccch
Confidence 43 3456666443222 678999999999998876
No 442
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.68 E-value=1.7e-07 Score=79.17 Aligned_cols=48 Identities=2% Similarity=-0.110 Sum_probs=33.8
Q ss_pred ccCCHHHHH------HH--Hh--cCCCCEEEEcCcCCCCC---HH------HHHHHHHhcCCcEEEEc
Q 024032 181 SWMSEGVHH------NQ--RC--LRSDDCALMKNDAEIDD---LK------SSPKYVLRRVDFAMVVS 229 (273)
Q Consensus 181 ~~LSgGqkq------~~--r~--l~~p~iLlLDEPts~LD---~~------~~l~~l~~~~g~tiiiv 229 (273)
..+|+|++| .. +. ..+|+++++|||++.+| .. ..++.+.+. |.|+|++
T Consensus 70 ~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~-g~tvi~v 136 (187)
T cd01124 70 DEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRF-GVTTLLT 136 (187)
T ss_pred cccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHC-CCEEEEE
Confidence 457888876 11 11 46899999999999998 43 334455544 8898887
No 443
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.63 E-value=5.1e-08 Score=92.45 Aligned_cols=133 Identities=14% Similarity=0.102 Sum_probs=73.7
Q ss_pred EcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEE--CCeeCCC-CC-ccEEEEe--------------ccchhhhcc
Q 024032 95 IPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLF--AQTSSGN-SS-HTITMYM--------------EEHNVMRSL 155 (273)
Q Consensus 95 i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i--~g~~i~~-~~-~~i~~v~--------------q~~~~~~~~ 155 (273)
-++|++.++||.||-||||-+++++|-++ .-|.-.- +++.+-. .| ..+--++ |....++.
T Consensus 97 prpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr- 175 (592)
T KOG0063|consen 97 PRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPR- 175 (592)
T ss_pred CCcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHH-
Confidence 36899999999999999999999999887 5554311 1111100 00 0000111 11111110
Q ss_pred CCcccccccccC--CHHHHHHHHHHh---------cccCCHHHHHHHHh----cCCCCEEEEcCcCCCCCHHHHH-----
Q 024032 156 QSGFCVYDSRGF--NYNRVHEGLEEL---------SSWMSEGVHHNQRC----LRSDDCALMKNDAEIDDLKSSP----- 215 (273)
Q Consensus 156 ~~~~tv~en~~~--~~~~~~~~l~~~---------~~~LSgGqkq~~r~----l~~p~iLlLDEPts~LD~~~~l----- 215 (273)
-...+|....+. +.+...++++.+ ..+||||+-||.++ +.++++.++|||.+.||..+.+
T Consensus 176 ~~k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~ 255 (592)
T KOG0063|consen 176 AVKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAIT 255 (592)
T ss_pred HHHHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHH
Confidence 001122211100 001111111111 17899999887643 7899999999999999999554
Q ss_pred -HHHHhcCCcEEEEc
Q 024032 216 -KYVLRRVDFAMVVS 229 (273)
Q Consensus 216 -~~l~~~~g~tiiiv 229 (273)
+.+... +.-||+|
T Consensus 256 IRsl~~p-~~YiIVV 269 (592)
T KOG0063|consen 256 IRSLINP-DRYIIVV 269 (592)
T ss_pred HHHhhCC-CCeEEEE
Confidence 445443 5667777
No 444
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.60 E-value=2.2e-07 Score=80.37 Aligned_cols=36 Identities=25% Similarity=0.414 Sum_probs=29.0
Q ss_pred EEEEEcCCCChHHHHHHHHhhCcc--CccEEEECCeeC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVLS--RSGLVLFAQTSS 135 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~~--~~G~I~i~g~~i 135 (273)
++.|.||+||||||+++.|.+.+. ..|.|.....++
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~ 40 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPI 40 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCc
Confidence 789999999999999999998876 367776554443
No 445
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.58 E-value=3.3e-08 Score=95.02 Aligned_cols=64 Identities=19% Similarity=0.156 Sum_probs=47.9
Q ss_pred ceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-Cc---cEEEECCeeCCC-----------CCccEEEEeccchh
Q 024032 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RS---GLVLFAQTSSGN-----------SSHTITMYMEEHNV 151 (273)
Q Consensus 87 ~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~---G~I~i~g~~i~~-----------~~~~i~~v~q~~~~ 151 (273)
+++++ |++.+|++++|+|+||+|||||+++|+|+.+ +. |.|-.++.++.+ .+..+++.+|+...
T Consensus 145 aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s~ 223 (434)
T PRK07196 145 AINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADESP 223 (434)
T ss_pred eccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCCh
Confidence 49999 9999999999999999999999999999987 64 333334433321 12346666776654
No 446
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.54 E-value=1.6e-07 Score=80.46 Aligned_cols=50 Identities=6% Similarity=0.105 Sum_probs=31.4
Q ss_pred CCHHHHHHHHh------cCCC-CEEEEcCcCCCCCHH---HHHHHH---HhcCCcEEEEceeCC
Q 024032 183 MSEGVHHNQRC------LRSD-DCALMKNDAEIDDLK---SSPKYV---LRRVDFAMVVSNIAE 233 (273)
Q Consensus 183 LSgGqkq~~r~------l~~p-~iLlLDEPts~LD~~---~~l~~l---~~~~g~tiiiv~~ad 233 (273)
+|.|++|...+ ..+. .++++|||-++|.|. .+++.+ .+ .+.-+|+++|..
T Consensus 237 ~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~-~~~QviitTHSp 299 (303)
T PF13304_consen 237 LSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSK-KNIQVIITTHSP 299 (303)
T ss_dssp --HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGG-GSSEEEEEES-G
T ss_pred CCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCc-cCCEEEEeCccc
Confidence 49999886422 2233 999999999999998 223323 22 256788776653
No 447
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.51 E-value=2.6e-07 Score=89.99 Aligned_cols=40 Identities=20% Similarity=0.219 Sum_probs=35.2
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccE
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGL 127 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~ 127 (273)
+++.++.+++|.+++||||||+||||++..|++.+. ..|.
T Consensus 246 ~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~ 286 (484)
T PRK06995 246 LDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGA 286 (484)
T ss_pred ccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCC
Confidence 667777888999999999999999999999999886 6653
No 448
>PRK08149 ATP synthase SpaL; Validated
Probab=98.50 E-value=1.9e-07 Score=89.71 Aligned_cols=63 Identities=14% Similarity=0.153 Sum_probs=52.5
Q ss_pred ceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-Cc---cEEEECCeeCCC---------CCccEEEEeccch
Q 024032 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RS---GLVLFAQTSSGN---------SSHTITMYMEEHN 150 (273)
Q Consensus 87 ~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~---G~I~i~g~~i~~---------~~~~i~~v~q~~~ 150 (273)
+++++ |++.+|++++|+|+||+|||||+++|++... +. |.|-..|.++.+ ..+++++|+....
T Consensus 141 aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd 216 (428)
T PRK08149 141 AIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSD 216 (428)
T ss_pred EEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCC
Confidence 39999 9999999999999999999999999999887 65 888888887642 2356677766544
No 449
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.50 E-value=1.6e-07 Score=90.77 Aligned_cols=47 Identities=17% Similarity=0.195 Sum_probs=41.8
Q ss_pred ceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCee
Q 024032 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTS 134 (273)
Q Consensus 87 ~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~ 134 (273)
+++++ |.+.+|++++|+|+||+|||||+++|+++.+ +.|.+...|..
T Consensus 153 ~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r 200 (440)
T TIGR01026 153 SIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGER 200 (440)
T ss_pred eeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeec
Confidence 38999 9999999999999999999999999999988 88777665553
No 450
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.49 E-value=5.9e-07 Score=73.07 Aligned_cols=33 Identities=30% Similarity=0.552 Sum_probs=27.3
Q ss_pred EEEEEcCCCChHHHHHHHHhhCcc-CccEEEECC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQ 132 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g 132 (273)
++.|.||||+||||+++.+++... ..|.+.+..
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 368999999999999999999877 666666543
No 451
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=98.47 E-value=9.7e-07 Score=91.53 Aligned_cols=54 Identities=9% Similarity=0.049 Sum_probs=41.1
Q ss_pred cCCCCEEEEcCcCCCC-CHH------HHHHHHHhcCCcEEEEc-----------------eeCCEEEEEeCCeEeeecC
Q 024032 194 LRSDDCALMKNDAEID-DLK------SSPKYVLRRVDFAMVVS-----------------NIAEIYKALKAGDSKPLDA 248 (273)
Q Consensus 194 l~~p~iLlLDEPts~L-D~~------~~l~~l~~~~g~tiiiv-----------------~~ad~i~vl~~G~i~~~g~ 248 (273)
..+|+++++|||+.+| |+. +.++.+++. |.+++++ ..|++.++|.+|++...+.
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~-~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~ 727 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKA-NCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGT 727 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccch
Confidence 3689999999999999 566 345555554 7787777 2478999999999866554
No 452
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=98.43 E-value=3.7e-06 Score=80.39 Aligned_cols=135 Identities=15% Similarity=0.208 Sum_probs=76.6
Q ss_pred eEEcCCcEEEEEcCCCChHHHHHHHH-hhCcc-Ccc--EEEE-CCe---eCC-CCCccEEEEeccchhhhccCCcccccc
Q 024032 93 MDIPPVITILLMGFSGSGKSSLVNLM-YSVLS-RSG--LVLF-AQT---SSG-NSSHTITMYMEEHNVMRSLQSGFCVYD 163 (273)
Q Consensus 93 ~~i~~Ge~~aivGpnGsGKSTLl~ll-~gl~~-~~G--~I~i-~g~---~i~-~~~~~i~~v~q~~~~~~~~~~~~tv~e 163 (273)
+-|++| ++.|+|.+=-||||||++| .|.|. --| .=++ -.. .++ +-.+.+..+-=. ..+.++.++. +
T Consensus 240 MGIp~G-vTlIvGGGyHGKSTLL~Ale~GVYnHipGDGRE~VVT~~~avkirAEDGR~V~~vDIS-pFI~~LP~g~---d 314 (448)
T PF09818_consen 240 MGIPKG-VTLIVGGGYHGKSTLLEALERGVYNHIPGDGREFVVTDPDAVKIRAEDGRSVEGVDIS-PFINNLPGGK---D 314 (448)
T ss_pred EeeCCc-EEEEECCCCccHHHHHHHHHhcccCCCCCCCceEEEECCCceEEEecCCceEeCccch-HHHhhCCCCC---C
Confidence 568899 9999999999999999999 46776 333 2111 000 000 011111111111 1111112111 1
Q ss_pred cccCCHHHHHHHHHHhcccCCHHHHHHHHh----cCCCCEEEEcCcCCCC-----CHH----------------HHHHHH
Q 024032 164 SRGFNYNRVHEGLEELSSWMSEGVHHNQRC----LRSDDCALMKNDAEID-----DLK----------------SSPKYV 218 (273)
Q Consensus 164 n~~~~~~~~~~~l~~~~~~LSgGqkq~~r~----l~~p~iLlLDEPts~L-----D~~----------------~~l~~l 218 (273)
...++. ..=||-.-|+..+ =..+++||+||=|++- |.. +.++.+
T Consensus 315 T~~FsT-----------~~ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l 383 (448)
T PF09818_consen 315 TTCFST-----------ENASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSL 383 (448)
T ss_pred CCcccc-----------cCCCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHhhccCCCCcchHHHHHHHH
Confidence 111110 2235656554322 3578999999999974 332 335667
Q ss_pred HhcCCcEEEEc--------eeCCEEEEEeCCeE
Q 024032 219 LRRVDFAMVVS--------NIAEIYKALKAGDS 243 (273)
Q Consensus 219 ~~~~g~tiiiv--------~~ad~i~vl~~G~i 243 (273)
.++.|.+.|+| ..||+|++|++=+.
T Consensus 384 ~~~~GvStIlV~Ggsgdy~~vAD~Vi~Md~Y~~ 416 (448)
T PF09818_consen 384 YEKLGVSTILVVGGSGDYFDVADRVIMMDEYRP 416 (448)
T ss_pred HHHcCceEEEEeccchhhHhhCCEEEEecCccc
Confidence 67779877777 77999999998654
No 453
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.42 E-value=2.9e-07 Score=65.18 Aligned_cols=35 Identities=34% Similarity=0.525 Sum_probs=28.4
Q ss_pred eeeeeeEEcC-CcEEEEEcCCCChHHHHHHHHhhCc
Q 024032 88 IQKGGMDIPP-VITILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 88 L~~is~~i~~-Ge~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
+++-.+++.+ |.++.|.||||||||||+.+|.=++
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4556677775 5699999999999999999987543
No 454
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=98.39 E-value=5.3e-07 Score=89.84 Aligned_cols=59 Identities=5% Similarity=-0.118 Sum_probs=46.3
Q ss_pred cCCHHHHHHHHh----cC----CCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeC
Q 024032 182 WMSEGVHHNQRC----LR----SDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKA 240 (273)
Q Consensus 182 ~LSgGqkq~~r~----l~----~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~ 240 (273)
.|||||+||..+ +. +|++||||||++|||+. +.++.+.+ +.+||+| ..||++++|++
T Consensus 440 ~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~--~~~vi~iTH~~~~~~~ad~~~~l~k 517 (563)
T TIGR00634 440 VASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE--RHQVLCVTHLPQVAAHADAHFKVEK 517 (563)
T ss_pred hcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEEChHHHHHhcCeEEEEEE
Confidence 489999997622 33 47999999999999999 34555653 7899888 55899999988
Q ss_pred Ce
Q 024032 241 GD 242 (273)
Q Consensus 241 G~ 242 (273)
|.
T Consensus 518 ~~ 519 (563)
T TIGR00634 518 EG 519 (563)
T ss_pred cc
Confidence 64
No 455
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.37 E-value=2.2e-06 Score=80.38 Aligned_cols=39 Identities=28% Similarity=0.426 Sum_probs=31.8
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhhCcc--CccEEEECCee
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYSVLS--RSGLVLFAQTS 134 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~gl~~--~~G~I~i~g~~ 134 (273)
.++..+.|.||+||||||+++.+.+.+. ..|.|.....+
T Consensus 120 ~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp 160 (343)
T TIGR01420 120 RPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDP 160 (343)
T ss_pred hcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCC
Confidence 5678999999999999999999998766 46777655444
No 456
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.37 E-value=2.6e-07 Score=81.18 Aligned_cols=40 Identities=15% Similarity=0.256 Sum_probs=30.5
Q ss_pred EEcCCcEEEEEcCCCChHHHHHHHHh--hCccCccEEEECCe
Q 024032 94 DIPPVITILLMGFSGSGKSSLVNLMY--SVLSRSGLVLFAQT 133 (273)
Q Consensus 94 ~i~~Ge~~aivGpnGsGKSTLl~ll~--gl~~~~G~I~i~g~ 133 (273)
-+++|+++.|.||+|+|||||...++ ++.+..+.+++...
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e 57 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTE 57 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 58899999999999999999988654 33334556666553
No 457
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.36 E-value=4.4e-07 Score=77.52 Aligned_cols=50 Identities=32% Similarity=0.315 Sum_probs=36.4
Q ss_pred CcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeCCC-----CCccEEEEeccc
Q 024032 98 VITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGN-----SSHTITMYMEEH 149 (273)
Q Consensus 98 Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i~~-----~~~~i~~v~q~~ 149 (273)
|++++|+||||||||||+++|++.... .+.+.+..+.. ....+.+..|+.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT--QLLVAHRYITRPASAGSENHIALSEQEF 56 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC--eEEEcCEECCCccchhHHhheeEcHHHH
Confidence 789999999999999999999987642 46676766543 123455555553
No 458
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.35 E-value=5.8e-06 Score=64.41 Aligned_cols=37 Identities=30% Similarity=0.501 Sum_probs=29.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhhCcc-Cc-cEEEECCe
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYSVLS-RS-GLVLFAQT 133 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~-G~I~i~g~ 133 (273)
++..+.|+||+|+||||+++.|+..+. .. +.+.++..
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~ 39 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGE 39 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCE
Confidence 367899999999999999999999877 33 45555443
No 459
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.34 E-value=6.9e-07 Score=88.42 Aligned_cols=63 Identities=10% Similarity=-0.021 Sum_probs=44.6
Q ss_pred ccCCHHHHHHHHh----c----------CCCCEEEEcCcC-CCCCHHH---HHHHHHhcCCcEEEEc-------eeCCEE
Q 024032 181 SWMSEGVHHNQRC----L----------RSDDCALMKNDA-EIDDLKS---SPKYVLRRVDFAMVVS-------NIAEIY 235 (273)
Q Consensus 181 ~~LSgGqkq~~r~----l----------~~p~iLlLDEPt-s~LD~~~---~l~~l~~~~g~tiiiv-------~~ad~i 235 (273)
..|||||+||..+ + .+|+++|||||| ++||+.. ....+.+-.|.|||+| ..+|++
T Consensus 467 ~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~~~~~iiiish~~~~~~~~d~~ 546 (562)
T PHA02562 467 ASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSLKDTNVFVISHKDHDPQKFDRH 546 (562)
T ss_pred hhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhCCCCeEEEEECchhchhhhhcE
Confidence 4699999997632 1 489999999998 7899992 2222222137788888 446898
Q ss_pred EEEeC-CeE
Q 024032 236 KALKA-GDS 243 (273)
Q Consensus 236 ~vl~~-G~i 243 (273)
++|.+ |+.
T Consensus 547 ~~l~~~~~~ 555 (562)
T PHA02562 547 LKMEKVGRF 555 (562)
T ss_pred EEEEEECCe
Confidence 88875 554
No 460
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.34 E-value=5.5e-07 Score=83.78 Aligned_cols=46 Identities=15% Similarity=0.189 Sum_probs=41.8
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCee
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTS 134 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~ 134 (273)
++++ |.+.+|++++|+|+||+|||||+++|+|+.. +.|.+..-|+.
T Consensus 60 iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGer 106 (326)
T cd01136 60 IDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGER 106 (326)
T ss_pred Eeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEecC
Confidence 9999 9999999999999999999999999999998 87877765543
No 461
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.32 E-value=1e-06 Score=93.63 Aligned_cols=60 Identities=12% Similarity=-0.016 Sum_probs=47.3
Q ss_pred ccCCHHHHHHHH---h--c----C-----CCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeC
Q 024032 181 SWMSEGVHHNQR---C--L----R-----SDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIA 232 (273)
Q Consensus 181 ~~LSgGqkq~~r---~--l----~-----~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~a 232 (273)
..|||||+++.. + + + +|++|||||||++||+. +.+..+.. .|.+|+|| .++
T Consensus 949 ~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~-~g~~i~iisH~~~~~~~~~ 1027 (1042)
T TIGR00618 949 ATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIRE-GSKMIGIISHVPEFRERIP 1027 (1042)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCcHHHHHhhC
Confidence 579999998752 1 2 1 79999999999999999 44566665 48998888 567
Q ss_pred CEEEEEeCC
Q 024032 233 EIYKALKAG 241 (273)
Q Consensus 233 d~i~vl~~G 241 (273)
|+|.|++.|
T Consensus 1028 ~~i~v~~~~ 1036 (1042)
T TIGR00618 1028 HRILVKKTN 1036 (1042)
T ss_pred CEEEEEECC
Confidence 999999764
No 462
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.32 E-value=4.1e-07 Score=79.04 Aligned_cols=28 Identities=39% Similarity=0.533 Sum_probs=26.4
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
++|++++|+||||||||||++.|+++++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 6899999999999999999999999876
No 463
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.32 E-value=5.7e-07 Score=86.56 Aligned_cols=63 Identities=13% Similarity=0.123 Sum_probs=52.3
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCee
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTS 134 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~ 134 (273)
.++.+.++..|..| ..+ ++++ |++.+|++++|+|+||+|||||+++|+|+.. +.|.+.+.|+.
T Consensus 129 ~~~r~~v~~~l~tG-i~a----ID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGeR 192 (433)
T PRK07594 129 AMVRQPITQPLMTG-IRA----IDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGER 192 (433)
T ss_pred ceeccCHhheeCCC-cee----eeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECCC
Confidence 45666777766544 344 9999 9999999999999999999999999999988 88887776654
No 464
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.31 E-value=6.6e-07 Score=76.18 Aligned_cols=37 Identities=27% Similarity=0.325 Sum_probs=31.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeCC
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSG 136 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i~ 136 (273)
+|++++|+||||||||||+++|++++.. +.++|.++.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~---~~i~gd~~~ 38 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA---KFIDGDDLH 38 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC---EEECCcccC
Confidence 5899999999999999999999998753 467777653
No 465
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=98.27 E-value=8.6e-07 Score=85.55 Aligned_cols=62 Identities=18% Similarity=0.161 Sum_probs=49.5
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-Cc---cEEEECCeeCCC--------CCccEEEEeccch
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RS---GLVLFAQTSSGN--------SSHTITMYMEEHN 150 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~---G~I~i~g~~i~~--------~~~~i~~v~q~~~ 150 (273)
++.+ |++.+|++++|+|+||+|||||+++|+|+.+ +. |.|.+.|.++.+ ..+..+++++...
T Consensus 166 ID~l-l~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~~d~iv~g~Igerg~ev~e~~~~~~~~~~~~~tvVv~~~a 239 (455)
T PRK07960 166 INAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAPA 239 (455)
T ss_pred eeec-ccccCCcEEEEECCCCCCccHHHHHHhCCCCCCEEEEEEEEECCeEHHHHHHhhcCcCCCceEEEEEECC
Confidence 4444 9999999999999999999999999999988 64 899999988753 1234566666543
No 466
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.26 E-value=9.7e-06 Score=71.56 Aligned_cols=26 Identities=38% Similarity=0.455 Sum_probs=23.9
Q ss_pred EEcCCcEEEEEcCCCChHHHHHHHHh
Q 024032 94 DIPPVITILLMGFSGSGKSSLVNLMY 119 (273)
Q Consensus 94 ~i~~Ge~~aivGpnGsGKSTLl~ll~ 119 (273)
-+++|.++.|.|++|||||||...++
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~ 46 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFV 46 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHH
Confidence 47899999999999999999998874
No 467
>PRK01889 GTPase RsgA; Reviewed
Probab=98.26 E-value=6.4e-07 Score=84.47 Aligned_cols=64 Identities=20% Similarity=0.197 Sum_probs=50.2
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCC--CCCccEEEEeccchh
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSG--NSSHTITMYMEEHNV 151 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~--~~~~~i~~v~q~~~~ 151 (273)
++.+.-.+++|++++|+|+||+|||||++.|+|... ..|.|.+++.... ...+.+.+++|...+
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l 251 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPLPSGGLL 251 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEecCCCee
Confidence 556666788999999999999999999999999999 9999999764322 233456666666543
No 468
>PRK10869 recombination and repair protein; Provisional
Probab=98.25 E-value=2e-06 Score=85.60 Aligned_cols=58 Identities=3% Similarity=-0.150 Sum_probs=44.9
Q ss_pred CCHHHHHHHHh----c----CCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCC
Q 024032 183 MSEGVHHNQRC----L----RSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKAG 241 (273)
Q Consensus 183 LSgGqkq~~r~----l----~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G 241 (273)
|||||+||..+ + .+|+++|||||++|||+. +.++.+.+ +.+||+| .+||+.+++.++
T Consensus 431 lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~--~~qvi~iTH~~~~~~~ad~~~~v~k~ 508 (553)
T PRK10869 431 ASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE--STQVMCVTHLPQVAGCGHQHFFVSKE 508 (553)
T ss_pred CCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEecCHHHHHhCCEEEEEecc
Confidence 79999998632 2 268999999999999999 34555543 6888888 568999998774
Q ss_pred e
Q 024032 242 D 242 (273)
Q Consensus 242 ~ 242 (273)
.
T Consensus 509 ~ 509 (553)
T PRK10869 509 T 509 (553)
T ss_pred c
Confidence 3
No 469
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.24 E-value=8.2e-07 Score=78.41 Aligned_cols=32 Identities=25% Similarity=0.385 Sum_probs=28.8
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhhCcc-CccEE
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYSVLS-RSGLV 128 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I 128 (273)
+..++||.||||||||||++.|+++++ ..|.+
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~ 64 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLEALLQQDGELP 64 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhhhccCCc
Confidence 345999999999999999999999999 88883
No 470
>PLN02796 D-glycerate 3-kinase
Probab=98.24 E-value=4.2e-07 Score=84.97 Aligned_cols=49 Identities=12% Similarity=0.013 Sum_probs=42.2
Q ss_pred eeeeeeEE---cCCcE-----EEEEcCCCChHHHHHHHHhhCcc-C---ccEEEECCeeCC
Q 024032 88 IQKGGMDI---PPVIT-----ILLMGFSGSGKSSLVNLMYSVLS-R---SGLVLFAQTSSG 136 (273)
Q Consensus 88 L~~is~~i---~~Ge~-----~aivGpnGsGKSTLl~ll~gl~~-~---~G~I~i~g~~i~ 136 (273)
++++++.+ ++|+. +||+|+||||||||++.|.+++. . .|.|.++|..+.
T Consensus 82 l~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt 142 (347)
T PLN02796 82 EDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLT 142 (347)
T ss_pred HHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccc
Confidence 88888887 56775 99999999999999999999987 4 588899988764
No 471
>PRK09099 type III secretion system ATPase; Provisional
Probab=98.24 E-value=1.1e-06 Score=84.73 Aligned_cols=47 Identities=13% Similarity=0.139 Sum_probs=43.5
Q ss_pred ceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCee
Q 024032 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTS 134 (273)
Q Consensus 87 ~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~ 134 (273)
+++++ |.+.+|++++|+|+||+|||||+++|+++.. +.|.|.+.|+.
T Consensus 153 ~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d~~vi~~iGer 200 (441)
T PRK09099 153 IVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQCDVNVIALIGER 200 (441)
T ss_pred eccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccC
Confidence 39999 9999999999999999999999999999988 88988888754
No 472
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.24 E-value=1.8e-05 Score=82.45 Aligned_cols=33 Identities=18% Similarity=0.224 Sum_probs=28.4
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhC
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl 121 (273)
-+|+++. ..+.++.|.|||++||||+||.++-.
T Consensus 598 pnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~ 630 (854)
T PRK05399 598 PNDCDLD-EERRLLLITGPNMAGKSTYMRQVALI 630 (854)
T ss_pred ecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHH
Confidence 6677777 67789999999999999999998753
No 473
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.20 E-value=1.9e-06 Score=82.77 Aligned_cols=47 Identities=17% Similarity=0.189 Sum_probs=43.8
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeC
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSS 135 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i 135 (273)
++++ |.+.+|++++|+|+||+|||||+++|++..+ +.|.|.+.|+..
T Consensus 128 iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~~~~gvi~~~Ger~ 175 (413)
T TIGR03497 128 IDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAKADINVIALIGERG 175 (413)
T ss_pred eeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccch
Confidence 9999 9999999999999999999999999999998 899888888654
No 474
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.19 E-value=1.2e-06 Score=86.10 Aligned_cols=62 Identities=16% Similarity=0.061 Sum_probs=53.2
Q ss_pred EEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCC
Q 024032 69 LRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSG 136 (273)
Q Consensus 69 ~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~ 136 (273)
+.+++..| |+..+ ++++++.+..|+.++|+||||+|||||++.|.|+++ .+|++.+....+.
T Consensus 187 ~~d~~~v~--Gq~~~----~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~ 249 (506)
T PRK09862 187 QHDLSDVI--GQEQG----KRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAIL 249 (506)
T ss_pred ccCeEEEE--CcHHH----HhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhh
Confidence 34565555 55555 899999999999999999999999999999999999 9999999887664
No 475
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.19 E-value=1.2e-06 Score=75.49 Aligned_cols=28 Identities=36% Similarity=0.423 Sum_probs=26.1
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
++|++++|+||||||||||+++|++.++
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5899999999999999999999999863
No 476
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.18 E-value=1.2e-06 Score=75.53 Aligned_cols=41 Identities=22% Similarity=0.323 Sum_probs=35.9
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhhCcc--CccEEEECCeeCC
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYSVLS--RSGLVLFAQTSSG 136 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~gl~~--~~G~I~i~g~~i~ 136 (273)
++|.+++|+|+||||||||.+.|.+.+. ..|.+.++|.++.
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~ 64 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVR 64 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHH
Confidence 6788999999999999999999999766 4578999987764
No 477
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=98.17 E-value=1.4e-06 Score=83.84 Aligned_cols=47 Identities=17% Similarity=0.166 Sum_probs=42.5
Q ss_pred ceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCee
Q 024032 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTS 134 (273)
Q Consensus 87 ~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~ 134 (273)
+++++ |.+.+|++++|+|+||+|||||+++|++... +.|.+...|..
T Consensus 135 ~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~~ 182 (422)
T TIGR02546 135 AIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGASADVNVIALIGER 182 (422)
T ss_pred eehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEccC
Confidence 39999 9999999999999999999999999999988 88888775543
No 478
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.17 E-value=4.8e-06 Score=78.90 Aligned_cols=36 Identities=17% Similarity=0.150 Sum_probs=32.7
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
+++.++.+++|++++|+||||+||||++..|++.+.
T Consensus 127 ~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~~ 162 (374)
T PRK14722 127 LDSEDALMERGGVFALMGPTGVGKTTTTAKLAARCV 162 (374)
T ss_pred hcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 777888899999999999999999999999998654
No 479
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.17 E-value=1.7e-06 Score=83.01 Aligned_cols=48 Identities=15% Similarity=0.139 Sum_probs=43.2
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCC
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSG 136 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~ 136 (273)
++ .+|++.+|++++|+|+||+|||||+++|+++.+ +.|.|.+.|+.-+
T Consensus 131 iD-~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~~~~gvi~~iGer~~ 179 (418)
T TIGR03498 131 ID-TFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTDADVVVIALVGERGR 179 (418)
T ss_pred Ee-eeccccCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEeeech
Confidence 55 699999999999999999999999999999988 8999888877543
No 480
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=98.15 E-value=3.1e-06 Score=79.93 Aligned_cols=28 Identities=32% Similarity=0.535 Sum_probs=26.0
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
++|..++|+||+||||||++++|++.+.
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~ 159 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELA 159 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4889999999999999999999999874
No 481
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.13 E-value=2.5e-06 Score=72.01 Aligned_cols=33 Identities=30% Similarity=0.393 Sum_probs=27.8
Q ss_pred CcEEEEEcCCCChHHHHHHHHhhCccCccEEEE
Q 024032 98 VITILLMGFSGSGKSSLVNLMYSVLSRSGLVLF 130 (273)
Q Consensus 98 Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i 130 (273)
|++++|+||||||||||++.|++.+...|.+.+
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~ 33 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGDPRVHF 33 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcCCcEEE
Confidence 578999999999999999999998773365554
No 482
>PRK03918 chromosome segregation protein; Provisional
Probab=98.11 E-value=5.4e-06 Score=86.31 Aligned_cols=58 Identities=12% Similarity=0.126 Sum_probs=44.2
Q ss_pred ccCCHHHHHHH----H-----h-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEE
Q 024032 181 SWMSEGVHHNQ----R-----C-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKA 237 (273)
Q Consensus 181 ~~LSgGqkq~~----r-----~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~v 237 (273)
..|||||+++. | + +.+|+++||||||++||+. ..+..+... +.+||+| ..||++++
T Consensus 787 ~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~-~~~iiiith~~~~~~~~d~~~~ 865 (880)
T PRK03918 787 TFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRK-IPQVIIVSHDEELKDAADYVIR 865 (880)
T ss_pred hhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHhCCeEEE
Confidence 46999999843 1 1 4789999999999999998 234444443 6788888 55899999
Q ss_pred Ee
Q 024032 238 LK 239 (273)
Q Consensus 238 l~ 239 (273)
|.
T Consensus 866 l~ 867 (880)
T PRK03918 866 VS 867 (880)
T ss_pred EE
Confidence 97
No 483
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=98.10 E-value=2.8e-06 Score=81.86 Aligned_cols=49 Identities=16% Similarity=0.114 Sum_probs=43.9
Q ss_pred ceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCC
Q 024032 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSG 136 (273)
Q Consensus 87 ~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~ 136 (273)
+++++ +++.+|++++|+|+||+|||||+++|++... +.+.|...|+.-+
T Consensus 147 aid~l-~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~~~~v~vi~~iGergr 196 (434)
T PRK08472 147 SIDGL-LTCGKGQKLGIFAGSGVGKSTLMGMIVKGCLAPIKVVALIGERGR 196 (434)
T ss_pred Hhhhc-ceecCCCEEEEECCCCCCHHHHHHHHhhccCCCEEEEEeeCccch
Confidence 48999 9999999999999999999999999999887 8888887776543
No 484
>PRK15494 era GTPase Era; Provisional
Probab=98.10 E-value=2e-06 Score=80.53 Aligned_cols=53 Identities=19% Similarity=0.150 Sum_probs=47.0
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCc-------EEEEEcCCCChHHHHHHHHhhC
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVI-------TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge-------~~aivGpnGsGKSTLl~ll~gl 121 (273)
.+..++++++++|+ ..... ++.++|+++.|+ .++|+|++|+|||||++.+.|-
T Consensus 16 ~g~~~~~~~~~~~~-~~~~~----~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~ 75 (339)
T PRK15494 16 KGDTEALAAAVRED-ASTGS----TSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGE 75 (339)
T ss_pred CCccccccccccCC-CCccc----ccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhCC
Confidence 56788999999997 44445 999999999999 9999999999999999999874
No 485
>PRK05922 type III secretion system ATPase; Validated
Probab=98.09 E-value=4e-06 Score=80.77 Aligned_cols=46 Identities=20% Similarity=0.166 Sum_probs=40.6
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCee
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTS 134 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~ 134 (273)
++.+ |.+.+|+.++|+||||+|||||+++|+|..+ +.|.+..-|+.
T Consensus 148 ID~l-l~I~~GqrigI~G~nG~GKSTLL~~Ia~~~~~d~gvi~liGer 194 (434)
T PRK05922 148 IDAF-LTLGKGQRIGVFSEPGSGKSSLLSTIAKGSKSTINVIALIGER 194 (434)
T ss_pred ecce-EEEcCCcEEEEECCCCCChHHHHHHHhccCCCCceEEEEeCCC
Confidence 6665 9999999999999999999999999999988 88888665553
No 486
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.09 E-value=1.5e-05 Score=70.77 Aligned_cols=38 Identities=11% Similarity=0.141 Sum_probs=27.7
Q ss_pred cCCCCEEEEcCcCCC------CCHH------HHHHHHHhcCCcEEEEceeC
Q 024032 194 LRSDDCALMKNDAEI------DDLK------SSPKYVLRRVDFAMVVSNIA 232 (273)
Q Consensus 194 l~~p~iLlLDEPts~------LD~~------~~l~~l~~~~g~tiiiv~~a 232 (273)
..+|+++|+| |+++ +|+. +.+..++++.|.||+++.|.
T Consensus 109 ~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~ 158 (239)
T cd01125 109 IRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHV 158 (239)
T ss_pred hcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEecc
Confidence 4799999999 7764 5766 23455666669999999554
No 487
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.09 E-value=5.8e-06 Score=89.80 Aligned_cols=50 Identities=14% Similarity=0.321 Sum_probs=38.1
Q ss_pred cEEEEEcCCCChHHHHHHHH----hhCcc--CccEEEECCeeCCC---CCccEEEEecc
Q 024032 99 ITILLMGFSGSGKSSLVNLM----YSVLS--RSGLVLFAQTSSGN---SSHTITMYMEE 148 (273)
Q Consensus 99 e~~aivGpnGsGKSTLl~ll----~gl~~--~~G~I~i~g~~i~~---~~~~i~~v~q~ 148 (273)
.+++|+|||||||||++.+| .|..+ ..|.+++.+..+.. .+..|.++|++
T Consensus 29 ~~~~I~G~NGaGKTTil~ai~~al~G~~~~~~~g~~~i~~~~~~~~~~~~a~V~l~F~~ 87 (1311)
T TIGR00606 29 PLTILVGPNGAGKTTIIECLKYICTGDFPPGTKGNTFVHDPKVAQETDVRAQIRLQFRD 87 (1311)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCceEecCCCcCccHhhhheeEEEEEc
Confidence 49999999999999999999 58877 47998887765532 33455666643
No 488
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.08 E-value=3.8e-06 Score=80.61 Aligned_cols=60 Identities=17% Similarity=0.065 Sum_probs=46.8
Q ss_pred EEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCee
Q 024032 69 LRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTS 134 (273)
Q Consensus 69 ~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~ 134 (273)
-+.++..|..| ..+ ++.+ |.+.+|++++|+|+||+|||||+++|+++.. +.+.+...|+.
T Consensus 114 R~~~~~~~~tG-i~~----id~l-~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~~~~~~vi~~iGer 174 (411)
T TIGR03496 114 RAPIDEPLDVG-VRA----INGL-LTVGRGQRMGIFAGSGVGKSTLLGMMARYTEADVVVVGLIGER 174 (411)
T ss_pred ccCcceEeeee-EEe----ecce-EEEecCcEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEEecC
Confidence 33444455433 334 8888 9999999999999999999999999999988 77776655553
No 489
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.07 E-value=2.9e-06 Score=71.50 Aligned_cols=26 Identities=35% Similarity=0.437 Sum_probs=24.2
Q ss_pred CcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 98 VITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 98 Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
|++++|+||||||||||++.|++.++
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCc
Confidence 68999999999999999999999765
No 490
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=98.07 E-value=3.7e-06 Score=71.07 Aligned_cols=34 Identities=26% Similarity=0.434 Sum_probs=28.3
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCc
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
++++.+++.+| +++|.||||+||||++.+|.-.+
T Consensus 10 ~~~~~i~f~~g-~~vi~G~Ng~GKStil~ai~~~L 43 (202)
T PF13476_consen 10 FKDLEIDFSPG-LNVIYGPNGSGKSTILEAIRYAL 43 (202)
T ss_dssp EEEEEEE--SE-EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcceEEEcCCC-cEEEECCCCCCHHHHHHHHHHHH
Confidence 77888888777 99999999999999999987654
No 491
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.07 E-value=7.6e-06 Score=87.06 Aligned_cols=59 Identities=15% Similarity=0.014 Sum_probs=45.0
Q ss_pred ccCCHHHHHHH---Hhc---------CCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCE
Q 024032 181 SWMSEGVHHNQ---RCL---------RSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEI 234 (273)
Q Consensus 181 ~~LSgGqkq~~---r~l---------~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~ 234 (273)
..|||||+++. +++ .+|++|||||||++||+. +.+..+.+. |+||+|| ++..+
T Consensus 948 ~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~-g~~v~iisH~~~l~~~i~~q 1026 (1047)
T PRK10246 948 RTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNAS-GKTIGVISHVEAMKERIPVQ 1026 (1047)
T ss_pred ccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHC-CCEEEEEecHHHHHHhccce
Confidence 67999999876 222 279999999999999999 446667655 9999999 33456
Q ss_pred EEEEeC
Q 024032 235 YKALKA 240 (273)
Q Consensus 235 i~vl~~ 240 (273)
|.|-..
T Consensus 1027 i~V~k~ 1032 (1047)
T PRK10246 1027 IKVKKI 1032 (1047)
T ss_pred EEEEEC
Confidence 666654
No 492
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=98.06 E-value=3.2e-06 Score=71.52 Aligned_cols=32 Identities=19% Similarity=0.438 Sum_probs=28.9
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhh
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~g 120 (273)
|+++++..+++++ +|+|++|||||||++.+.+
T Consensus 10 ~~~~~~~~~~~ki-~ilG~~~~GKStLi~~l~~ 41 (190)
T cd00879 10 LSSLGLYNKEAKI-LFLGLDNAGKTTLLHMLKD 41 (190)
T ss_pred HHHhhcccCCCEE-EEECCCCCCHHHHHHHHhc
Confidence 8888888888766 9999999999999999987
No 493
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=98.06 E-value=3.2e-06 Score=81.76 Aligned_cols=47 Identities=21% Similarity=0.198 Sum_probs=38.7
Q ss_pred ceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-C---ccEEEECCee
Q 024032 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R---SGLVLFAQTS 134 (273)
Q Consensus 87 ~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~---~G~I~i~g~~ 134 (273)
+++.+ |.+.+|++++|+|+||+|||||+++|+|+.. + .|.|-..+.+
T Consensus 158 aID~l-~~I~~GqrigI~G~sG~GKSTLl~~I~g~~~~dv~V~g~Ig~rg~e 208 (451)
T PRK05688 158 SINGL-LTVGRGQRLGLFAGTGVGKSVLLGMMTRFTEADIIVVGLIGERGRE 208 (451)
T ss_pred eecce-EEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEeCcCcHh
Confidence 49999 9999999999999999999999999999876 4 2444444443
No 494
>PRK01156 chromosome segregation protein; Provisional
Probab=98.06 E-value=9.6e-06 Score=84.88 Aligned_cols=59 Identities=15% Similarity=0.194 Sum_probs=42.5
Q ss_pred ccCCHHHHHHHH---------h-cCCCCEEEEcCcCCCCCHHH------HHHHHHhcC-C-cEEEEc-------eeCCEE
Q 024032 181 SWMSEGVHHNQR---------C-LRSDDCALMKNDAEIDDLKS------SPKYVLRRV-D-FAMVVS-------NIAEIY 235 (273)
Q Consensus 181 ~~LSgGqkq~~r---------~-l~~p~iLlLDEPts~LD~~~------~l~~l~~~~-g-~tiiiv-------~~ad~i 235 (273)
..|||||+++.. + +.+|++++|||||++||+.. .+....+.. + .+||++ ..||++
T Consensus 800 ~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~~d~i 879 (895)
T PRK01156 800 DSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSVADVA 879 (895)
T ss_pred ccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHhcCeE
Confidence 469999998641 2 47899999999999999993 223222222 3 377777 568999
Q ss_pred EEEe
Q 024032 236 KALK 239 (273)
Q Consensus 236 ~vl~ 239 (273)
+.+.
T Consensus 880 i~~~ 883 (895)
T PRK01156 880 YEVK 883 (895)
T ss_pred EEEE
Confidence 8886
No 495
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.06 E-value=3.2e-06 Score=78.59 Aligned_cols=40 Identities=23% Similarity=0.380 Sum_probs=36.4
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeC
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSS 135 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i 135 (273)
++|++++|+||||+||||++..|++.+. ..|+|.+.+.|.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~ 152 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDT 152 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCc
Confidence 5789999999999999999999999998 778999877765
No 496
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.04 E-value=3.1e-06 Score=77.65 Aligned_cols=36 Identities=25% Similarity=0.302 Sum_probs=30.0
Q ss_pred cEEEEEcCCCChHHHHHHHHhhCcc---CccEEEECCee
Q 024032 99 ITILLMGFSGSGKSSLVNLMYSVLS---RSGLVLFAQTS 134 (273)
Q Consensus 99 e~~aivGpnGsGKSTLl~ll~gl~~---~~G~I~i~g~~ 134 (273)
.++||.||||||||||+++|.+++. .+|.|.+-+.|
T Consensus 63 ~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D 101 (290)
T TIGR00554 63 YIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTD 101 (290)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecc
Confidence 4999999999999999999999876 46777664444
No 497
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.03 E-value=3.9e-06 Score=81.06 Aligned_cols=46 Identities=17% Similarity=0.192 Sum_probs=39.9
Q ss_pred cceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc--CccEEEECC
Q 024032 86 GGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS--RSGLVLFAQ 132 (273)
Q Consensus 86 ~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~--~~G~I~i~g 132 (273)
.+++++ |++.+|+.++|+|+||+|||||+++|+|+.+ +.|.|.+.|
T Consensus 153 ~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liG 200 (442)
T PRK06315 153 RCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIG 200 (442)
T ss_pred EEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEEC
Confidence 348887 9999999999999999999999999999985 456777644
No 498
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.02 E-value=3.6e-06 Score=85.91 Aligned_cols=47 Identities=17% Similarity=0.230 Sum_probs=39.0
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-Ccc--EEEECCee
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSG--LVLFAQTS 134 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G--~I~i~g~~ 134 (273)
+++.++.+++|+++++|||||+||||++..|++.+. ..| .|.+-..|
T Consensus 175 l~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~D 224 (767)
T PRK14723 175 LRDEDALLAQGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTD 224 (767)
T ss_pred ccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCc
Confidence 677888888999999999999999999999999886 555 56554433
No 499
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.01 E-value=9.7e-06 Score=88.27 Aligned_cols=46 Identities=24% Similarity=0.323 Sum_probs=40.6
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCee
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTS 134 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~ 134 (273)
+.+..|++.+| +++|+|+|||||||+|++|++++. ..|.+.+++.+
T Consensus 18 ~~~~~~~f~~~-~~~l~G~NGaGKSTll~ai~~~l~~~~~~~~f~~~~ 64 (1486)
T PRK04863 18 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTT 64 (1486)
T ss_pred ccceEEEecCC-eEEEECCCCCCHHHHHHHHHccccCCCCeEEECCcc
Confidence 66778888887 999999999999999999999987 88989888654
No 500
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.99 E-value=4.2e-06 Score=73.73 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=22.4
Q ss_pred EEEEEcCCCChHHHHHHHHhhCcc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
++||.||||||||||++.|.+++.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999999875
Done!