Query 024032
Match_columns 273
No_of_seqs 372 out of 3401
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 17:01:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024032.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024032hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g1u_C Hemin import ATP-bindin 100.0 1.2E-44 4.1E-49 325.7 21.7 195 65-269 10-252 (266)
2 3nh6_A ATP-binding cassette SU 100.0 1E-44 3.5E-49 332.2 21.3 208 37-256 16-279 (306)
3 3tui_C Methionine import ATP-b 100.0 1E-44 3.5E-49 338.9 21.2 185 64-256 22-255 (366)
4 3gfo_A Cobalt import ATP-bindi 100.0 3.8E-45 1.3E-49 330.5 17.1 191 65-264 6-243 (275)
5 3fvq_A Fe(3+) IONS import ATP- 100.0 4.9E-44 1.7E-48 333.8 20.6 182 66-257 4-231 (359)
6 3rlf_A Maltose/maltodextrin im 100.0 1.1E-43 3.7E-48 333.7 19.4 181 66-256 3-225 (381)
7 3tif_A Uncharacterized ABC tra 100.0 1.7E-43 5.7E-48 312.6 18.8 180 66-253 1-233 (235)
8 1g6h_A High-affinity branched- 100.0 5.5E-43 1.9E-47 313.1 20.8 186 66-262 7-254 (257)
9 1ji0_A ABC transporter; ATP bi 100.0 1E-42 3.5E-47 308.4 20.9 187 65-262 5-236 (240)
10 2olj_A Amino acid ABC transpor 100.0 6.1E-43 2.1E-47 314.1 19.4 181 65-256 23-250 (263)
11 2ihy_A ABC transporter, ATP-bi 100.0 1.1E-42 3.7E-47 315.0 19.8 196 65-269 20-267 (279)
12 1vpl_A ABC transporter, ATP-bi 100.0 2.4E-42 8.3E-47 309.1 21.6 189 64-263 13-247 (256)
13 2yyz_A Sugar ABC transporter, 100.0 1.6E-42 5.3E-47 324.0 20.7 189 66-264 3-236 (359)
14 1b0u_A Histidine permease; ABC 100.0 1.1E-42 3.6E-47 312.2 18.7 180 66-256 6-244 (262)
15 1z47_A CYSA, putative ABC-tran 100.0 8.8E-43 3E-47 325.1 18.2 185 64-257 12-238 (355)
16 2it1_A 362AA long hypothetical 100.0 1.7E-42 5.8E-47 324.0 19.2 189 66-264 3-236 (362)
17 2pcj_A ABC transporter, lipopr 100.0 3.9E-42 1.3E-46 301.8 19.9 172 66-248 4-222 (224)
18 3d31_A Sulfate/molybdate ABC t 100.0 1.6E-42 5.5E-47 322.7 18.4 181 66-257 1-220 (348)
19 1v43_A Sugar-binding transport 100.0 2.9E-42 1E-46 323.5 20.2 189 66-264 11-244 (372)
20 2ff7_A Alpha-hemolysin translo 100.0 7.2E-42 2.5E-46 304.4 21.7 179 66-255 7-233 (247)
21 1oxx_K GLCV, glucose, ABC tran 100.0 1.9E-42 6.6E-47 322.9 18.6 182 66-257 3-233 (353)
22 1g29_1 MALK, maltose transport 100.0 4.5E-42 1.5E-46 322.4 20.2 182 66-257 3-232 (372)
23 4a82_A Cystic fibrosis transme 100.0 6.1E-42 2.1E-46 337.7 19.8 224 29-263 294-574 (578)
24 3qf4_A ABC transporter, ATP-bi 100.0 7.3E-42 2.5E-46 337.8 19.3 221 31-262 298-575 (587)
25 2nq2_C Hypothetical ABC transp 100.0 4.2E-41 1.4E-45 300.5 21.6 186 66-269 4-232 (253)
26 3b5x_A Lipid A export ATP-bind 100.0 3.1E-41 1.1E-45 332.8 22.3 219 28-257 297-570 (582)
27 1mv5_A LMRA, multidrug resista 100.0 1.4E-41 4.9E-46 301.4 17.7 187 66-264 1-237 (243)
28 2onk_A Molybdate/tungstate ABC 100.0 9.9E-42 3.4E-46 302.4 16.5 178 66-256 1-218 (240)
29 2yz2_A Putative ABC transporte 100.0 4.7E-41 1.6E-45 302.1 20.6 182 66-255 2-228 (266)
30 3b60_A Lipid A export ATP-bind 100.0 3.3E-41 1.1E-45 332.7 20.7 217 28-255 297-568 (582)
31 4f4c_A Multidrug resistance pr 100.0 9.4E-42 3.2E-46 362.9 17.8 217 32-257 1034-1307(1321)
32 3gd7_A Fusion complex of cysti 100.0 1.5E-41 5.1E-46 320.5 15.9 185 64-257 17-245 (390)
33 2ixe_A Antigen peptide transpo 100.0 4.5E-41 1.5E-45 303.1 18.1 183 64-255 14-246 (271)
34 3qf4_B Uncharacterized ABC tra 100.0 1.6E-41 5.4E-46 336.1 16.2 217 28-256 309-580 (598)
35 2qi9_C Vitamin B12 import ATP- 100.0 6.5E-41 2.2E-45 298.7 17.1 187 66-269 4-237 (249)
36 2yl4_A ATP-binding cassette SU 100.0 1.5E-40 5.1E-45 328.8 20.8 216 29-255 295-571 (595)
37 4f4c_A Multidrug resistance pr 100.0 2E-40 6.8E-45 352.7 21.9 216 30-256 370-643 (1321)
38 2ghi_A Transport protein; mult 100.0 2.2E-40 7.7E-45 296.8 18.8 180 65-255 16-243 (260)
39 2zu0_C Probable ATP-dependent 100.0 3.3E-40 1.1E-44 296.8 17.1 179 64-253 18-253 (267)
40 2d2e_A SUFC protein; ABC-ATPas 100.0 4E-40 1.4E-44 293.4 16.2 174 66-250 3-229 (250)
41 2pze_A Cystic fibrosis transme 100.0 2.4E-39 8.4E-44 284.8 20.5 175 64-255 4-219 (229)
42 2cbz_A Multidrug resistance-as 100.0 2.4E-39 8.2E-44 286.3 17.9 173 66-255 3-218 (237)
43 2pjz_A Hypothetical protein ST 100.0 2.8E-38 9.5E-43 283.8 19.8 178 66-255 1-216 (263)
44 1sgw_A Putative ABC transporte 100.0 2.3E-38 7.9E-43 276.3 14.6 167 64-243 8-210 (214)
45 3g5u_A MCG1178, multidrug resi 100.0 3.9E-38 1.3E-42 334.4 18.2 215 31-256 343-615 (1284)
46 3g5u_A MCG1178, multidrug resi 100.0 1.2E-37 4E-42 330.7 18.4 215 32-257 987-1261(1284)
47 2bbs_A Cystic fibrosis transme 100.0 3.5E-37 1.2E-41 280.3 16.7 197 37-254 5-247 (290)
48 3bk7_A ABC transporter ATP-bin 100.0 4.9E-33 1.7E-37 275.6 14.6 172 65-255 356-564 (607)
49 1yqt_A RNAse L inhibitor; ATP- 100.0 5.9E-33 2E-37 271.7 11.8 172 65-255 286-494 (538)
50 3ozx_A RNAse L inhibitor; ATP 100.0 1E-31 3.5E-36 262.9 14.8 171 65-253 268-476 (538)
51 2iw3_A Elongation factor 3A; a 100.0 3E-31 1E-35 273.0 15.7 174 65-248 670-981 (986)
52 3j16_B RLI1P; ribosome recycli 100.0 8.6E-31 2.9E-35 259.5 13.9 169 70-255 350-560 (608)
53 3bk7_A ABC transporter ATP-bin 100.0 6.7E-31 2.3E-35 260.4 10.7 167 66-241 83-304 (607)
54 1yqt_A RNAse L inhibitor; ATP- 100.0 5.1E-31 1.8E-35 258.0 9.1 163 70-241 25-234 (538)
55 3ux8_A Excinuclease ABC, A sub 100.0 2.3E-30 7.7E-35 259.1 12.9 169 87-256 33-300 (670)
56 2iw3_A Elongation factor 3A; a 100.0 1.7E-29 5.9E-34 259.9 19.4 171 66-254 435-635 (986)
57 3ux8_A Excinuclease ABC, A sub 100.0 7.1E-29 2.4E-33 248.3 14.4 168 87-255 337-641 (670)
58 3ozx_A RNAse L inhibitor; ATP 99.9 1.1E-27 3.9E-32 234.2 10.0 162 71-242 4-214 (538)
59 3j16_B RLI1P; ribosome recycli 99.9 3.5E-27 1.2E-31 233.6 12.3 166 71-243 82-299 (608)
60 2vf7_A UVRA2, excinuclease ABC 99.9 4.2E-26 1.4E-30 232.4 15.1 181 64-256 500-829 (842)
61 3pih_A Uvrabc system protein A 99.9 2.7E-26 9.3E-31 235.5 13.0 86 171-257 784-905 (916)
62 2v9p_A Replication protein E1; 99.9 2.6E-28 9E-33 223.2 -7.2 188 29-252 58-264 (305)
63 2npi_A Protein CLP1; CLP1-PCF1 99.9 4.8E-28 1.6E-32 232.8 -6.6 169 89-264 129-351 (460)
64 2r6f_A Excinuclease ABC subuni 99.9 3.2E-25 1.1E-29 227.2 11.3 180 65-256 628-944 (972)
65 4aby_A DNA repair protein RECN 99.9 3.8E-24 1.3E-28 201.3 13.4 62 183-246 296-380 (415)
66 2ygr_A Uvrabc system protein A 99.9 3.8E-24 1.3E-28 219.9 12.8 75 181-256 862-962 (993)
67 1z6g_A Guanylate kinase; struc 99.9 6.8E-24 2.3E-28 184.4 -3.8 147 87-240 12-193 (218)
68 3b85_A Phosphate starvation-in 99.9 5.8E-24 2E-28 184.4 -5.2 142 88-243 16-172 (208)
69 3qf7_A RAD50; ABC-ATPase, ATPa 99.8 3.7E-21 1.3E-25 179.7 13.0 64 181-245 278-364 (365)
70 1tq4_A IIGP1, interferon-induc 99.8 6.8E-23 2.3E-27 194.4 -3.5 116 88-212 39-200 (413)
71 4gp7_A Metallophosphoesterase; 99.8 4.9E-22 1.7E-26 166.2 0.0 123 90-231 1-157 (171)
72 1e69_A Chromosome segregation 99.8 1.1E-20 3.6E-25 173.3 8.3 62 181-244 218-302 (322)
73 3sop_A Neuronal-specific septi 99.8 4.4E-21 1.5E-25 172.3 5.7 124 100-229 4-146 (270)
74 3b9q_A Chloroplast SRP recepto 99.8 1.2E-21 4.2E-26 178.8 1.1 149 88-244 90-285 (302)
75 1znw_A Guanylate kinase, GMP k 99.8 3.1E-22 1.1E-26 171.9 -3.2 146 88-239 12-202 (207)
76 2dpy_A FLII, flagellum-specifi 99.8 2.3E-22 7.7E-27 192.3 -6.9 174 65-255 130-345 (438)
77 2og2_A Putative signal recogni 99.8 1E-20 3.5E-25 176.5 1.1 147 89-243 148-341 (359)
78 1ye8_A Protein THEP1, hypothet 99.8 1.8E-20 6.2E-25 158.4 2.3 118 100-230 2-137 (178)
79 3aez_A Pantothenate kinase; tr 99.8 3E-21 1E-25 176.9 -3.8 124 63-211 40-209 (312)
80 1tf7_A KAIC; homohexamer, hexa 99.8 5.2E-20 1.8E-24 179.2 3.5 144 87-241 27-210 (525)
81 2o8b_B DNA mismatch repair pro 99.8 4.2E-19 1.4E-23 184.6 6.7 154 65-251 749-939 (1022)
82 2pt7_A CAG-ALFA; ATPase, prote 99.8 4.9E-20 1.7E-24 170.0 -0.5 117 88-243 161-292 (330)
83 2jeo_A Uridine-cytidine kinase 99.7 7.5E-19 2.6E-23 154.6 4.9 129 79-229 10-161 (245)
84 2obl_A ESCN; ATPase, hydrolase 99.7 9.7E-21 3.3E-25 175.9 -8.0 170 65-254 44-255 (347)
85 2ehv_A Hypothetical protein PH 99.7 7.3E-19 2.5E-23 152.9 3.8 146 88-239 19-206 (251)
86 2o5v_A DNA replication and rep 99.7 5.6E-17 1.9E-21 151.2 16.1 71 182-252 265-354 (359)
87 3thx_A DNA mismatch repair pro 99.7 3.7E-18 1.3E-22 175.9 7.4 156 66-252 631-811 (934)
88 2qnr_A Septin-2, protein NEDD5 99.7 1.4E-18 4.9E-23 158.1 3.1 143 70-229 2-163 (301)
89 1cr0_A DNA primase/helicase; R 99.7 1.6E-18 5.6E-23 156.1 3.2 148 88-243 25-237 (296)
90 4a74_A DNA repair and recombin 99.7 7.7E-18 2.6E-22 144.6 4.9 131 94-242 21-201 (231)
91 2i3b_A HCR-ntpase, human cance 99.7 2.9E-19 1E-23 152.5 -5.6 141 98-246 1-168 (189)
92 1wb9_A DNA mismatch repair pro 99.7 1.9E-17 6.5E-22 168.4 5.4 152 65-245 576-749 (800)
93 3thx_B DNA mismatch repair pro 99.7 5.5E-17 1.9E-21 166.9 8.7 118 88-229 663-792 (918)
94 3szr_A Interferon-induced GTP- 99.7 3.2E-18 1.1E-22 169.6 -2.0 167 66-253 10-236 (608)
95 1pzn_A RAD51, DNA repair and r 99.7 2E-17 7E-22 153.5 2.6 152 88-252 120-313 (349)
96 2qag_C Septin-7; cell cycle, c 99.6 3.1E-17 1E-21 155.8 3.1 152 64-234 9-179 (418)
97 1ewq_A DNA mismatch repair pro 99.6 1.3E-16 4.6E-21 161.5 7.9 132 64-230 548-695 (765)
98 3qkt_A DNA double-strand break 99.6 1.1E-15 3.8E-20 140.9 11.8 58 181-239 247-327 (339)
99 1tf7_A KAIC; homohexamer, hexa 99.6 1.7E-16 5.9E-21 154.4 5.6 128 92-242 275-444 (525)
100 2eyu_A Twitching motility prot 99.6 2E-16 7E-21 141.2 5.0 107 88-229 17-129 (261)
101 1pui_A ENGB, probable GTP-bind 99.6 2.9E-17 1E-21 139.2 -0.7 56 66-130 3-64 (210)
102 4ad8_A DNA repair protein RECN 99.6 1.6E-15 5.4E-20 147.3 10.7 57 183-241 397-473 (517)
103 2w0m_A SSO2452; RECA, SSPF, un 99.6 2E-16 6.9E-21 135.5 2.5 145 87-241 11-192 (235)
104 1nlf_A Regulatory protein REPA 99.6 4.4E-15 1.5E-19 132.7 10.2 137 94-235 26-183 (279)
105 1rj9_A FTSY, signal recognitio 99.6 1.8E-16 6.2E-21 144.6 1.2 132 97-233 101-258 (304)
106 1htw_A HI0065; nucleotide-bind 99.6 1.4E-17 4.8E-22 138.2 -6.8 73 88-165 23-95 (158)
107 3asz_A Uridine kinase; cytidin 99.5 1.2E-16 4.1E-21 136.4 -3.1 117 95-229 3-157 (211)
108 3jvv_A Twitching mobility prot 99.5 1.9E-15 6.3E-20 140.8 4.0 123 71-229 93-227 (356)
109 1s96_A Guanylate kinase, GMP k 99.5 9.8E-15 3.3E-19 127.1 5.1 134 92-253 10-159 (219)
110 1lw7_A Transcriptional regulat 99.5 1.6E-16 5.4E-21 147.8 -9.4 153 88-252 158-353 (365)
111 2yhs_A FTSY, cell division pro 99.5 2.3E-14 8E-19 138.2 5.4 131 88-230 283-446 (503)
112 3pih_A Uvrabc system protein A 99.5 1.4E-14 4.6E-19 149.0 3.6 138 114-256 384-562 (916)
113 2qag_B Septin-6, protein NEDD5 99.5 2.7E-14 9.2E-19 135.7 4.4 144 66-229 16-215 (427)
114 2gza_A Type IV secretion syste 99.4 1.1E-14 3.9E-19 135.5 0.5 126 88-241 165-302 (361)
115 2ewv_A Twitching motility prot 99.4 2E-13 6.8E-18 127.7 6.7 102 95-229 133-240 (372)
116 3e70_C DPA, signal recognition 99.4 1.6E-13 5.5E-18 126.4 5.9 143 94-244 125-307 (328)
117 2cvh_A DNA repair and recombin 99.4 1E-12 3.5E-17 111.8 10.5 132 88-241 9-185 (220)
118 2ygr_A Uvrabc system protein A 99.4 1.2E-12 4.3E-17 134.8 10.8 74 181-255 520-618 (993)
119 2r6f_A Excinuclease ABC subuni 99.4 1.3E-12 4.3E-17 134.4 10.6 74 181-255 503-601 (972)
120 1n0w_A DNA repair protein RAD5 99.4 4.6E-13 1.6E-17 115.7 5.7 41 94-134 20-68 (243)
121 1f2t_B RAD50 ABC-ATPase; DNA d 99.4 1.6E-12 5.5E-17 106.6 8.5 62 181-243 56-142 (148)
122 1nij_A Hypothetical protein YJ 99.3 9.9E-14 3.4E-18 126.9 -0.9 123 98-231 4-187 (318)
123 2vf7_A UVRA2, excinuclease ABC 99.3 5.1E-12 1.7E-16 129.0 11.1 74 181-255 378-476 (842)
124 3ec2_A DNA replication protein 99.3 1.9E-12 6.6E-17 107.7 6.3 35 92-126 32-67 (180)
125 1lvg_A Guanylate kinase, GMP k 99.3 2.9E-14 9.8E-19 121.6 -5.2 130 96-240 2-173 (198)
126 3tr0_A Guanylate kinase, GMP k 99.3 4E-12 1.4E-16 107.2 7.7 107 92-205 1-127 (205)
127 2bbw_A Adenylate kinase 4, AK4 99.3 3.1E-14 1.1E-18 124.8 -6.6 38 97-134 26-67 (246)
128 1odf_A YGR205W, hypothetical 3 99.2 1.5E-12 5.2E-17 117.8 2.7 101 96-212 29-168 (290)
129 3euj_A Chromosome partition pr 99.2 5.8E-12 2E-16 121.4 6.2 48 88-136 20-68 (483)
130 2kjq_A DNAA-related protein; s 99.2 1.2E-11 4.1E-16 101.1 6.6 35 87-126 30-64 (149)
131 2f1r_A Molybdopterin-guanine d 99.2 3.5E-13 1.2E-17 113.1 -3.6 91 99-199 3-124 (171)
132 1p9r_A General secretion pathw 99.2 4.2E-13 1.4E-17 127.4 -4.6 41 96-136 165-206 (418)
133 1udx_A The GTP-binding protein 99.2 2.6E-11 9E-16 114.9 7.5 126 88-229 147-304 (416)
134 1u0l_A Probable GTPase ENGC; p 99.2 1.1E-11 3.7E-16 112.5 4.6 87 93-180 164-279 (301)
135 3lda_A DNA repair protein RAD5 99.2 4E-11 1.4E-15 113.1 7.5 117 94-231 174-326 (400)
136 2rcn_A Probable GTPase ENGC; Y 99.1 2.1E-11 7.3E-16 113.4 4.8 100 88-193 206-324 (358)
137 2bdt_A BH3686; alpha-beta prot 99.1 2.5E-13 8.7E-18 113.8 -7.6 140 98-252 2-182 (189)
138 2qm8_A GTPase/ATPase; G protei 99.1 3.9E-12 1.3E-16 117.3 -0.7 81 66-152 29-119 (337)
139 2x8a_A Nuclear valosin-contain 99.1 2.2E-13 7.6E-18 122.1 -9.6 112 88-207 36-164 (274)
140 1sxj_E Activator 1 40 kDa subu 99.1 1.6E-10 5.5E-15 105.4 7.5 115 101-229 39-170 (354)
141 3c8u_A Fructokinase; YP_612366 99.0 9.2E-11 3.1E-15 100.1 4.3 40 95-134 19-62 (208)
142 1ni3_A YCHF GTPase, YCHF GTP-b 99.0 2.5E-12 8.7E-17 121.0 -8.4 140 94-249 16-208 (392)
143 3kta_B Chromosome segregation 99.0 7.8E-10 2.7E-14 92.8 7.6 61 181-243 63-146 (173)
144 1sq5_A Pantothenate kinase; P- 99.0 8.1E-12 2.8E-16 113.6 -4.9 64 64-135 35-123 (308)
145 3lnc_A Guanylate kinase, GMP k 99.0 1.2E-10 4.2E-15 100.7 2.3 37 87-123 16-53 (231)
146 1vma_A Cell division protein F 99.0 9E-10 3.1E-14 100.4 7.8 90 90-207 96-197 (306)
147 2yv5_A YJEQ protein; hydrolase 99.0 2E-10 6.9E-15 104.2 3.4 58 93-151 160-226 (302)
148 1t9h_A YLOQ, probable GTPase E 99.0 1E-10 3.5E-15 106.7 1.4 59 93-151 168-234 (307)
149 1qhl_A Protein (cell division 99.0 3.3E-11 1.1E-15 105.5 -1.9 56 92-148 22-91 (227)
150 2dr3_A UPF0273 protein PH0284; 98.9 8.4E-10 2.9E-14 95.1 5.9 46 88-133 12-60 (247)
151 1zp6_A Hypothetical protein AT 98.9 7.3E-10 2.5E-14 92.3 4.3 41 94-135 5-45 (191)
152 1iy2_A ATP-dependent metallopr 98.9 5.8E-12 2E-16 112.2 -9.9 110 88-205 65-194 (278)
153 1ls1_A Signal recognition part 98.8 8.6E-09 2.9E-13 93.2 9.4 46 89-136 91-137 (295)
154 1ixz_A ATP-dependent metallopr 98.8 1.1E-11 3.7E-16 108.7 -9.6 112 88-207 41-172 (254)
155 3nwj_A ATSK2; P loop, shikimat 98.8 3.3E-10 1.1E-14 100.4 -1.1 52 65-121 16-71 (250)
156 2oap_1 GSPE-2, type II secreti 98.8 8.1E-10 2.8E-14 107.3 1.1 48 87-134 249-297 (511)
157 3k1j_A LON protease, ATP-depen 98.7 1.6E-09 5.3E-14 107.0 0.4 66 79-148 45-112 (604)
158 3uie_A Adenylyl-sulfate kinase 98.7 7.2E-10 2.5E-14 93.8 -1.8 49 88-136 15-65 (200)
159 1oix_A RAS-related protein RAB 98.7 1E-08 3.4E-13 85.8 5.1 36 100-135 31-78 (191)
160 3a00_A Guanylate kinase, GMP k 98.7 2.9E-09 1E-13 89.1 1.0 30 98-127 1-31 (186)
161 4e22_A Cytidylate kinase; P-lo 98.7 2.5E-09 8.7E-14 94.2 0.1 69 96-164 25-112 (252)
162 3kta_A Chromosome segregation 98.6 1.5E-08 5E-13 83.9 4.1 61 89-150 18-90 (182)
163 3auy_A DNA double-strand break 98.6 3.7E-08 1.3E-12 91.5 6.9 58 182-239 280-359 (371)
164 4eun_A Thermoresistant glucoki 98.6 1.3E-08 4.4E-13 86.0 3.2 59 90-151 21-83 (200)
165 3vaa_A Shikimate kinase, SK; s 98.6 1.4E-08 4.7E-13 85.8 3.1 36 87-122 14-49 (199)
166 2j41_A Guanylate kinase; GMP, 98.6 2.1E-08 7.3E-13 84.1 3.8 61 93-153 1-64 (207)
167 2px0_A Flagellar biosynthesis 98.6 1.3E-07 4.5E-12 85.5 9.2 39 96-134 103-143 (296)
168 1w1w_A Structural maintenance 98.6 6.8E-08 2.3E-12 91.2 7.5 57 182-239 333-410 (430)
169 2ius_A DNA translocase FTSK; n 98.6 9.8E-09 3.4E-13 99.6 1.5 47 90-136 159-208 (512)
170 2r6a_A DNAB helicase, replicat 98.6 2.9E-08 1E-12 94.6 4.7 147 88-243 193-401 (454)
171 3tau_A Guanylate kinase, GMP k 98.5 6.1E-08 2.1E-12 82.6 4.6 28 96-123 6-33 (208)
172 1kgd_A CASK, peripheral plasma 98.5 5.6E-08 1.9E-12 80.9 3.4 35 96-130 3-39 (180)
173 2vp4_A Deoxynucleoside kinase; 98.5 3E-08 1E-12 85.9 1.6 43 90-135 12-54 (230)
174 2zr9_A Protein RECA, recombina 98.5 2.1E-07 7.1E-12 86.1 7.0 36 94-129 57-93 (349)
175 1rz3_A Hypothetical protein rb 98.4 7.2E-08 2.5E-12 81.6 2.6 42 94-135 18-60 (201)
176 1zu4_A FTSY; GTPase, signal re 98.4 7.3E-08 2.5E-12 88.2 2.6 49 88-136 95-144 (320)
177 2dy1_A Elongation factor G; tr 98.4 1E-07 3.4E-12 95.3 3.6 118 92-229 3-132 (665)
178 2dhr_A FTSH; AAA+ protein, hex 98.4 7.9E-09 2.7E-13 100.0 -4.3 112 88-207 56-187 (499)
179 1knq_A Gluconate kinase; ALFA/ 98.4 1.4E-07 4.7E-12 77.5 3.0 38 96-136 6-43 (175)
180 1in4_A RUVB, holliday junction 98.4 8.4E-09 2.9E-13 94.4 -5.1 77 69-151 21-114 (334)
181 2e87_A Hypothetical protein PH 98.3 1.5E-06 5.3E-11 80.0 9.0 113 97-229 166-286 (357)
182 1svm_A Large T antigen; AAA+ f 98.3 1.4E-07 4.9E-12 88.2 1.6 42 87-130 158-199 (377)
183 3t34_A Dynamin-related protein 98.3 1.1E-06 3.7E-11 81.0 7.0 41 88-131 27-70 (360)
184 3cr8_A Sulfate adenylyltranfer 98.3 2E-07 6.9E-12 91.2 2.1 42 94-135 365-409 (552)
185 1w1w_A Structural maintenance 98.2 3.6E-07 1.2E-11 86.3 3.2 33 93-125 21-54 (430)
186 1cke_A CK, MSSA, protein (cyti 98.2 7.9E-08 2.7E-12 82.0 -1.3 52 98-149 5-74 (227)
187 3tqc_A Pantothenate kinase; bi 98.2 1.6E-07 5.4E-12 86.1 0.2 43 88-130 76-127 (321)
188 2f9l_A RAB11B, member RAS onco 98.2 7.5E-07 2.6E-11 74.4 4.3 36 100-135 7-54 (199)
189 3hr8_A Protein RECA; alpha and 98.2 2.4E-06 8.1E-11 79.3 8.0 41 94-134 57-99 (356)
190 2p67_A LAO/AO transport system 98.2 3.1E-07 1.1E-11 84.3 1.5 48 88-135 46-94 (341)
191 3ney_A 55 kDa erythrocyte memb 98.2 6.6E-07 2.2E-11 76.4 3.3 31 93-123 14-44 (197)
192 1kag_A SKI, shikimate kinase I 98.1 8.8E-07 3E-11 72.2 2.8 27 97-123 3-29 (173)
193 4a1f_A DNAB helicase, replicat 98.1 4.6E-06 1.6E-10 76.8 7.4 120 88-229 36-162 (338)
194 1ega_A Protein (GTP-binding pr 98.1 2.4E-05 8.3E-10 70.4 12.0 25 97-121 7-31 (301)
195 1f2t_A RAD50 ABC-ATPase; DNA d 98.1 1.7E-06 5.9E-11 70.2 3.7 32 88-120 14-45 (149)
196 2qt1_A Nicotinamide riboside k 98.1 1.6E-06 5.4E-11 73.2 3.3 32 91-122 14-45 (207)
197 3ice_A Transcription terminati 98.1 5.8E-07 2E-11 84.4 0.1 55 64-123 131-199 (422)
198 2www_A Methylmalonic aciduria 98.0 1.8E-06 6.2E-11 79.6 3.3 41 96-136 72-113 (349)
199 2pez_A Bifunctional 3'-phospho 98.0 1.8E-06 6.2E-11 71.1 2.7 40 96-135 3-44 (179)
200 2xau_A PRE-mRNA-splicing facto 97.9 1.2E-05 4.1E-10 81.6 6.8 29 95-123 106-134 (773)
201 3m6a_A ATP-dependent protease 97.9 2.5E-06 8.6E-11 83.1 1.0 45 88-133 99-144 (543)
202 4eaq_A DTMP kinase, thymidylat 97.9 5.9E-06 2E-10 71.6 3.1 37 88-124 13-52 (229)
203 1m7g_A Adenylylsulfate kinase; 97.9 4.8E-06 1.6E-10 70.6 2.4 43 93-135 20-65 (211)
204 3lxx_A GTPase IMAP family memb 97.9 6.8E-05 2.3E-09 64.5 9.6 27 100-126 31-58 (239)
205 3qks_A DNA double-strand break 97.8 9.1E-06 3.1E-10 69.1 3.8 32 88-120 14-45 (203)
206 2ffh_A Protein (FFH); SRP54, s 97.8 7.1E-06 2.4E-10 77.8 3.0 46 89-136 91-137 (425)
207 2yvu_A Probable adenylyl-sulfa 97.8 1.1E-05 3.7E-10 66.8 3.5 38 92-129 7-45 (186)
208 1m2o_B GTP-binding protein SAR 97.8 1.6E-05 5.4E-10 65.9 4.5 32 88-120 14-45 (190)
209 1j8m_F SRP54, signal recogniti 97.8 5.3E-06 1.8E-10 74.9 1.6 47 89-136 89-137 (297)
210 1jjv_A Dephospho-COA kinase; P 97.8 1.1E-05 3.8E-10 67.7 3.4 22 100-121 4-25 (206)
211 1y63_A LMAJ004144AAA protein; 97.8 1.2E-05 4.1E-10 66.8 3.3 32 90-121 2-33 (184)
212 2qor_A Guanylate kinase; phosp 97.7 1.1E-05 3.7E-10 68.1 2.7 29 94-122 8-36 (204)
213 3bh0_A DNAB-like replicative h 97.7 5.7E-05 1.9E-09 68.4 7.6 111 88-229 58-187 (315)
214 2qag_A Septin-2, protein NEDD5 97.7 1.2E-06 4E-11 81.3 -3.7 57 65-133 16-73 (361)
215 2gj8_A MNME, tRNA modification 97.7 2E-05 6.7E-10 64.4 3.3 27 96-122 2-28 (172)
216 2if2_A Dephospho-COA kinase; a 97.7 2E-05 6.8E-10 66.0 3.2 22 100-121 3-24 (204)
217 1f6b_A SAR1; gtpases, N-termin 97.6 1.5E-05 5.2E-10 66.5 1.7 32 88-120 16-47 (198)
218 2wjg_A FEOB, ferrous iron tran 97.6 4.3E-05 1.5E-09 62.4 4.3 22 100-121 9-30 (188)
219 1mky_A Probable GTP-binding pr 97.6 5.3E-05 1.8E-09 71.6 5.0 36 100-135 182-230 (439)
220 1fnn_A CDC6P, cell division co 97.6 0.00067 2.3E-08 61.6 12.0 24 100-123 46-69 (389)
221 1np6_A Molybdopterin-guanine d 97.5 5E-05 1.7E-09 63.3 4.0 36 99-134 7-46 (174)
222 2wji_A Ferrous iron transport 97.5 4.5E-05 1.5E-09 61.5 3.2 24 100-123 5-28 (165)
223 1sxj_C Activator 1 40 kDa subu 97.5 4.8E-06 1.7E-10 75.7 -2.9 40 88-127 34-76 (340)
224 2ga8_A Hypothetical 39.9 kDa p 97.5 1.3E-05 4.3E-10 74.4 -0.3 37 87-123 11-49 (359)
225 3t61_A Gluconokinase; PSI-biol 97.5 3.6E-05 1.2E-09 64.5 2.5 25 98-122 18-42 (202)
226 3auy_A DNA double-strand break 97.5 6E-05 2E-09 69.7 4.1 31 88-119 16-46 (371)
227 2qtf_A Protein HFLX, GTP-bindi 97.5 7.8E-05 2.7E-09 69.1 4.4 36 100-135 181-228 (364)
228 1lv7_A FTSH; alpha/beta domain 97.5 6.9E-05 2.3E-09 65.1 3.8 33 89-123 38-70 (257)
229 3cm0_A Adenylate kinase; ATP-b 97.5 5.6E-05 1.9E-09 62.0 3.1 25 96-120 2-26 (186)
230 4ag6_A VIRB4 ATPase, type IV s 97.4 9.8E-05 3.4E-09 68.4 4.8 35 97-131 34-69 (392)
231 2ohf_A Protein OLA1, GTP-bindi 97.4 7.3E-05 2.5E-09 70.2 3.4 40 94-133 18-69 (396)
232 1q3t_A Cytidylate kinase; nucl 97.4 8.9E-05 3.1E-09 63.8 3.7 27 94-120 12-38 (236)
233 2zej_A Dardarin, leucine-rich 97.3 9.4E-05 3.2E-09 60.7 3.1 23 100-122 4-26 (184)
234 3kb2_A SPBC2 prophage-derived 97.3 0.0001 3.5E-09 59.3 3.2 23 100-122 3-25 (173)
235 2p5t_B PEZT; postsegregational 97.3 8.1E-05 2.8E-09 65.0 2.7 41 94-135 28-68 (253)
236 1qhx_A CPT, protein (chloramph 97.3 0.00013 4.5E-09 59.4 3.6 25 98-122 3-27 (178)
237 2z4s_A Chromosomal replication 97.3 0.00054 1.9E-08 64.8 8.4 26 98-123 130-155 (440)
238 3r20_A Cytidylate kinase; stru 97.3 6.2E-05 2.1E-09 65.7 1.5 31 98-128 9-43 (233)
239 1gtv_A TMK, thymidylate kinase 97.3 6.1E-05 2.1E-09 63.2 1.0 24 100-123 2-25 (214)
240 2rhm_A Putative kinase; P-loop 97.2 0.00016 5.4E-09 59.5 3.3 26 96-121 3-28 (193)
241 1kht_A Adenylate kinase; phosp 97.2 0.00016 5.6E-09 59.1 3.5 26 98-123 3-28 (192)
242 1vht_A Dephospho-COA kinase; s 97.2 0.00019 6.5E-09 60.7 3.7 24 97-120 3-26 (218)
243 3lw7_A Adenylate kinase relate 97.2 0.00017 5.8E-09 57.7 3.1 19 100-118 3-21 (179)
244 3kl4_A SRP54, signal recogniti 97.2 0.00014 4.7E-09 69.1 2.8 39 97-135 96-135 (433)
245 2jaq_A Deoxyguanosine kinase; 97.2 0.0002 6.9E-09 59.2 3.3 23 100-122 2-24 (205)
246 2q6t_A DNAB replication FORK h 97.2 0.0014 4.8E-08 61.9 9.4 36 88-123 190-225 (444)
247 3iij_A Coilin-interacting nucl 97.1 0.00015 5E-09 59.4 2.2 25 96-120 9-33 (180)
248 2ze6_A Isopentenyl transferase 97.1 0.00021 7.3E-09 62.5 3.3 23 100-122 3-25 (253)
249 1ex7_A Guanylate kinase; subst 97.1 0.00021 7.2E-09 60.2 3.1 21 101-121 4-24 (186)
250 1uf9_A TT1252 protein; P-loop, 97.1 0.00027 9.4E-09 58.5 3.6 31 98-132 8-38 (203)
251 1ypw_A Transitional endoplasmi 97.1 0.00018 6.3E-09 73.2 2.9 31 93-123 233-263 (806)
252 2v54_A DTMP kinase, thymidylat 97.1 0.00031 1.1E-08 58.3 3.8 26 97-122 3-28 (204)
253 3trf_A Shikimate kinase, SK; a 97.1 0.00027 9.4E-09 57.9 3.4 25 97-121 4-28 (185)
254 1xjc_A MOBB protein homolog; s 97.1 0.0002 6.7E-09 59.5 2.3 25 99-123 5-29 (169)
255 1via_A Shikimate kinase; struc 97.1 0.00024 8.3E-09 57.9 2.7 23 100-122 6-28 (175)
256 1ly1_A Polynucleotide kinase; 97.1 0.00031 1E-08 56.9 3.3 22 99-120 3-24 (181)
257 2plr_A DTMP kinase, probable t 97.0 0.00035 1.2E-08 58.1 3.6 32 97-128 3-34 (213)
258 3k53_A Ferrous iron transport 97.0 0.00028 9.7E-09 62.0 3.2 23 100-122 5-27 (271)
259 2c95_A Adenylate kinase 1; tra 97.0 0.00034 1.2E-08 57.6 3.5 26 96-121 7-32 (196)
260 2wwf_A Thymidilate kinase, put 97.0 0.00038 1.3E-08 58.1 3.5 27 96-122 8-34 (212)
261 1nn5_A Similar to deoxythymidy 97.0 0.00038 1.3E-08 58.1 3.5 29 95-123 6-34 (215)
262 2b8t_A Thymidine kinase; deoxy 97.0 0.0019 6.6E-08 55.8 7.7 33 195-229 88-122 (223)
263 1tev_A UMP-CMP kinase; ploop, 97.0 0.00045 1.5E-08 56.5 3.5 23 98-120 3-25 (196)
264 1gvn_B Zeta; postsegregational 97.0 0.00036 1.2E-08 62.3 3.1 36 96-132 31-66 (287)
265 1nks_A Adenylate kinase; therm 96.9 0.00042 1.4E-08 56.6 3.1 24 100-123 3-26 (194)
266 2ged_A SR-beta, signal recogni 96.9 0.00046 1.6E-08 56.4 3.3 23 100-122 50-72 (193)
267 2bwj_A Adenylate kinase 5; pho 96.9 0.0002 6.7E-09 59.2 0.8 28 94-121 8-35 (199)
268 3ake_A Cytidylate kinase; CMP 96.9 0.00041 1.4E-08 57.6 2.8 22 100-121 4-25 (208)
269 1ko7_A HPR kinase/phosphatase; 96.9 0.0013 4.4E-08 59.9 6.1 32 88-120 135-166 (314)
270 3cf0_A Transitional endoplasmi 96.9 0.00041 1.4E-08 62.0 2.7 29 94-122 45-73 (301)
271 1z2a_A RAS-related protein RAB 96.9 0.00057 2E-08 54.0 3.3 22 100-121 7-28 (168)
272 2vli_A Antibiotic resistance p 96.8 0.00041 1.4E-08 56.5 2.3 25 97-121 4-28 (183)
273 2z0h_A DTMP kinase, thymidylat 96.8 0.00058 2E-08 56.2 3.2 24 100-123 2-25 (197)
274 2ce2_X GTPase HRAS; signaling 96.8 0.00059 2E-08 53.5 3.1 22 100-121 5-26 (166)
275 2dyk_A GTP-binding protein; GT 96.8 0.00065 2.2E-08 53.4 3.3 23 100-122 3-25 (161)
276 3q72_A GTP-binding protein RAD 96.8 0.00052 1.8E-08 54.4 2.7 23 100-122 4-26 (166)
277 1kao_A RAP2A; GTP-binding prot 96.8 0.00065 2.2E-08 53.4 3.3 22 100-121 5-26 (167)
278 3ihw_A Centg3; RAS, centaurin, 96.8 0.0012 4.2E-08 54.0 5.1 21 100-120 22-42 (184)
279 2erx_A GTP-binding protein DI- 96.8 0.00068 2.3E-08 53.7 3.4 21 100-120 5-25 (172)
280 2nzj_A GTP-binding protein REM 96.8 0.00066 2.3E-08 54.2 3.3 22 100-121 6-27 (175)
281 1u8z_A RAS-related protein RAL 96.8 0.00062 2.1E-08 53.6 3.0 22 100-121 6-27 (168)
282 1aky_A Adenylate kinase; ATP:A 96.8 0.00073 2.5E-08 57.2 3.6 25 97-121 3-27 (220)
283 1z0j_A RAB-22, RAS-related pro 96.8 0.00065 2.2E-08 53.8 3.1 23 100-122 8-30 (170)
284 3llm_A ATP-dependent RNA helic 96.8 0.00046 1.6E-08 59.3 2.3 27 94-120 72-98 (235)
285 2lkc_A Translation initiation 96.8 0.00087 3E-08 53.7 3.8 25 97-121 7-31 (178)
286 1zd8_A GTP:AMP phosphotransfer 96.8 0.00069 2.4E-08 57.7 3.3 25 96-120 5-29 (227)
287 1jal_A YCHF protein; nucleotid 96.8 0.001 3.4E-08 61.7 4.7 35 98-132 2-48 (363)
288 1g16_A RAS-related protein SEC 96.8 0.00063 2.1E-08 53.9 2.9 22 100-121 5-26 (170)
289 1ek0_A Protein (GTP-binding pr 96.8 0.00067 2.3E-08 53.6 3.0 22 100-121 5-26 (170)
290 1fzq_A ADP-ribosylation factor 96.8 0.00059 2E-08 55.7 2.7 22 100-121 18-39 (181)
291 3b1v_A Ferrous iron uptake tra 96.8 0.00066 2.3E-08 60.2 3.3 23 100-122 5-27 (272)
292 2ce7_A Cell division protein F 96.8 0.00034 1.2E-08 67.2 1.4 32 88-121 41-72 (476)
293 3q85_A GTP-binding protein REM 96.8 0.00074 2.5E-08 53.6 3.2 22 100-121 4-25 (169)
294 4fcw_A Chaperone protein CLPB; 96.8 0.00074 2.5E-08 59.7 3.5 30 99-128 48-78 (311)
295 1ky3_A GTP-binding protein YPT 96.8 0.00076 2.6E-08 54.0 3.3 22 100-121 10-31 (182)
296 1z08_A RAS-related protein RAB 96.8 0.00076 2.6E-08 53.5 3.3 22 100-121 8-29 (170)
297 1c1y_A RAS-related protein RAP 96.8 0.00069 2.4E-08 53.5 3.0 22 100-121 5-26 (167)
298 1wms_A RAB-9, RAB9, RAS-relate 96.8 0.00072 2.5E-08 54.1 3.1 22 100-121 9-30 (177)
299 3lxw_A GTPase IMAP family memb 96.7 0.00073 2.5E-08 58.7 3.3 24 100-123 23-46 (247)
300 1svi_A GTP-binding protein YSX 96.7 0.00069 2.4E-08 55.3 3.0 23 99-121 24-46 (195)
301 2fn4_A P23, RAS-related protei 96.7 0.00078 2.7E-08 53.9 3.2 22 100-121 11-32 (181)
302 3pqc_A Probable GTP-binding pr 96.7 0.00071 2.4E-08 55.0 3.0 22 100-121 25-46 (195)
303 3tw8_B RAS-related protein RAB 96.7 0.00065 2.2E-08 54.4 2.7 22 100-121 11-32 (181)
304 3fb4_A Adenylate kinase; psych 96.7 0.00078 2.7E-08 56.6 3.2 21 100-120 2-22 (216)
305 4dsu_A GTPase KRAS, isoform 2B 96.7 0.00081 2.8E-08 54.3 3.1 22 100-121 6-27 (189)
306 2cdn_A Adenylate kinase; phosp 96.7 0.00098 3.3E-08 55.5 3.6 25 97-121 19-43 (201)
307 1zak_A Adenylate kinase; ATP:A 96.7 0.00073 2.5E-08 57.3 2.9 25 97-121 4-28 (222)
308 1ukz_A Uridylate kinase; trans 96.7 0.00097 3.3E-08 55.4 3.6 24 97-120 14-37 (203)
309 1r2q_A RAS-related protein RAB 96.7 0.00083 2.8E-08 53.1 3.0 22 100-121 8-29 (170)
310 2pbr_A DTMP kinase, thymidylat 96.7 0.00088 3E-08 54.8 3.2 23 100-122 2-24 (195)
311 3clv_A RAB5 protein, putative; 96.7 0.00092 3.2E-08 54.3 3.3 22 100-121 9-30 (208)
312 1qf9_A UMP/CMP kinase, protein 96.7 0.00092 3.1E-08 54.5 3.2 23 98-120 6-28 (194)
313 1e6c_A Shikimate kinase; phosp 96.7 0.0008 2.7E-08 54.2 2.7 22 100-121 4-25 (173)
314 2cxx_A Probable GTP-binding pr 96.7 0.00085 2.9E-08 54.3 2.9 22 100-121 3-24 (190)
315 1upt_A ARL1, ADP-ribosylation 96.7 0.001 3.4E-08 52.9 3.3 21 100-120 9-29 (171)
316 3dl0_A Adenylate kinase; phosp 96.7 0.00095 3.2E-08 56.1 3.2 21 100-120 2-22 (216)
317 3bc1_A RAS-related protein RAB 96.6 0.001 3.4E-08 53.8 3.3 22 100-121 13-34 (195)
318 2oil_A CATX-8, RAS-related pro 96.6 0.001 3.5E-08 54.4 3.3 22 100-121 27-48 (193)
319 1moz_A ARL1, ADP-ribosylation 96.6 0.00059 2E-08 55.1 1.8 23 98-120 18-40 (183)
320 2pt5_A Shikimate kinase, SK; a 96.6 0.0011 3.6E-08 53.3 3.3 22 100-121 2-23 (168)
321 1r8s_A ADP-ribosylation factor 96.6 0.00099 3.4E-08 52.6 3.0 21 100-120 2-22 (164)
322 2hxs_A RAB-26, RAS-related pro 96.6 0.0012 3.9E-08 53.0 3.4 22 100-121 8-29 (178)
323 1zuh_A Shikimate kinase; alpha 96.6 0.0011 3.9E-08 53.4 3.3 23 99-121 8-30 (168)
324 2y8e_A RAB-protein 6, GH09086P 96.6 0.0011 3.6E-08 53.0 3.1 22 100-121 16-37 (179)
325 3bos_A Putative DNA replicatio 96.6 0.0013 4.5E-08 55.3 3.8 27 97-123 51-77 (242)
326 2z43_A DNA repair and recombin 96.6 0.0016 5.6E-08 58.8 4.6 28 94-121 103-130 (324)
327 3t5d_A Septin-7; GTP-binding p 96.6 0.00084 2.9E-08 59.1 2.6 23 100-122 10-32 (274)
328 3a4m_A L-seryl-tRNA(SEC) kinas 96.6 0.0012 4.1E-08 57.7 3.6 27 97-123 3-29 (260)
329 3t1o_A Gliding protein MGLA; G 96.6 0.0011 3.9E-08 53.7 3.3 24 100-123 16-39 (198)
330 1wf3_A GTP-binding protein; GT 96.6 0.0011 3.6E-08 59.7 3.3 22 100-121 9-30 (301)
331 2a9k_A RAS-related protein RAL 96.6 0.0012 4.1E-08 53.1 3.3 22 100-121 20-41 (187)
332 2g6b_A RAS-related protein RAB 96.6 0.0012 4.1E-08 53.0 3.3 22 100-121 12-33 (180)
333 1z0f_A RAB14, member RAS oncog 96.6 0.0012 4.2E-08 52.7 3.3 22 100-121 17-38 (179)
334 3con_A GTPase NRAS; structural 96.6 0.0012 4.1E-08 53.7 3.3 22 100-121 23-44 (190)
335 2iyv_A Shikimate kinase, SK; t 96.5 0.001 3.4E-08 54.4 2.6 23 99-121 3-25 (184)
336 1nrj_B SR-beta, signal recogni 96.5 0.0013 4.3E-08 55.0 3.3 23 100-122 14-36 (218)
337 2efe_B Small GTP-binding prote 96.5 0.0013 4.6E-08 52.7 3.3 22 100-121 14-35 (181)
338 2bov_A RAla, RAS-related prote 96.5 0.0012 4.1E-08 54.3 3.0 22 100-121 16-37 (206)
339 3tlx_A Adenylate kinase 2; str 96.5 0.0014 4.9E-08 56.7 3.7 24 97-120 28-51 (243)
340 2dby_A GTP-binding protein; GD 96.5 0.0011 3.7E-08 61.6 3.0 22 100-121 3-24 (368)
341 1vg8_A RAS-related protein RAB 96.5 0.0014 4.6E-08 54.1 3.3 22 100-121 10-31 (207)
342 2w58_A DNAI, primosome compone 96.5 0.0015 5.2E-08 54.2 3.6 25 99-123 55-79 (202)
343 1v5w_A DMC1, meiotic recombina 96.5 0.0014 4.7E-08 59.9 3.6 28 94-121 118-145 (343)
344 3iev_A GTP-binding protein ERA 96.5 0.0013 4.3E-08 59.2 3.3 22 100-121 12-33 (308)
345 2bme_A RAB4A, RAS-related prot 96.5 0.0013 4.5E-08 53.1 3.1 22 100-121 12-33 (186)
346 2xtp_A GTPase IMAP family memb 96.5 0.0013 4.3E-08 57.1 3.2 23 100-122 24-46 (260)
347 2gf0_A GTP-binding protein DI- 96.5 0.0012 4.1E-08 53.9 2.9 21 100-120 10-30 (199)
348 1sky_E F1-ATPase, F1-ATP synth 96.5 0.00092 3.2E-08 64.0 2.5 37 93-129 146-183 (473)
349 3iby_A Ferrous iron transport 96.5 0.0013 4.3E-08 57.7 3.2 22 100-121 3-24 (256)
350 1uj2_A Uridine-cytidine kinase 96.5 0.0013 4.5E-08 57.0 3.2 23 99-121 23-45 (252)
351 4dhe_A Probable GTP-binding pr 96.5 0.00081 2.8E-08 56.3 1.8 23 100-122 31-53 (223)
352 2gf9_A RAS-related protein RAB 96.5 0.0013 4.6E-08 53.6 3.0 22 100-121 24-45 (189)
353 3kkq_A RAS-related protein M-R 96.5 0.0015 5.1E-08 52.7 3.3 22 100-121 20-41 (183)
354 2qby_A CDC6 homolog 1, cell di 96.5 0.0012 4.2E-08 59.5 3.0 28 96-123 43-70 (386)
355 1m7b_A RND3/RHOE small GTP-bin 96.5 0.0014 4.9E-08 53.3 3.1 22 100-121 9-30 (184)
356 3cbq_A GTP-binding protein REM 96.5 0.0011 3.6E-08 55.1 2.4 22 100-121 25-46 (195)
357 3tkl_A RAS-related protein RAB 96.5 0.0015 5.2E-08 53.2 3.3 22 100-121 18-39 (196)
358 1ksh_A ARF-like protein 2; sma 96.5 0.0015 5.1E-08 53.0 3.1 24 98-121 18-41 (186)
359 2wsm_A Hydrogenase expression/ 96.5 0.0014 4.9E-08 54.9 3.1 23 100-122 32-54 (221)
360 2fg5_A RAB-22B, RAS-related pr 96.5 0.0015 5.2E-08 53.6 3.2 22 100-121 25-46 (192)
361 2grj_A Dephospho-COA kinase; T 96.4 0.0016 5.4E-08 54.8 3.2 23 99-121 13-35 (192)
362 2cjw_A GTP-binding protein GEM 96.4 0.0016 5.5E-08 53.8 3.3 22 100-121 8-29 (192)
363 1mh1_A RAC1; GTP-binding, GTPa 96.4 0.0017 5.7E-08 52.3 3.3 21 100-120 7-27 (186)
364 2xb4_A Adenylate kinase; ATP-b 96.4 0.0016 5.4E-08 55.5 3.3 22 100-121 2-23 (223)
365 3t5g_A GTP-binding protein RHE 96.4 0.0017 5.7E-08 52.4 3.1 21 100-120 8-28 (181)
366 3oes_A GTPase rhebl1; small GT 96.4 0.0016 5.6E-08 53.8 3.1 23 100-122 26-48 (201)
367 1z06_A RAS-related protein RAB 96.4 0.0018 6.1E-08 52.8 3.3 22 100-121 22-43 (189)
368 1zbd_A Rabphilin-3A; G protein 96.4 0.0016 5.6E-08 53.6 3.1 22 100-121 10-31 (203)
369 3be4_A Adenylate kinase; malar 96.4 0.0018 6E-08 54.8 3.2 25 97-121 4-28 (217)
370 1jwy_B Dynamin A GTPase domain 96.4 0.0016 5.6E-08 57.8 3.2 23 100-122 26-48 (315)
371 3dz8_A RAS-related protein RAB 96.4 0.0018 6E-08 53.0 3.1 22 100-121 25-46 (191)
372 3i8s_A Ferrous iron transport 96.4 0.0017 5.8E-08 57.3 3.2 22 100-121 5-26 (274)
373 2a5j_A RAS-related protein RAB 96.4 0.0019 6.5E-08 52.8 3.3 22 100-121 23-44 (191)
374 3a1s_A Iron(II) transport prot 96.4 0.0018 6.3E-08 56.7 3.4 22 100-121 7-28 (258)
375 3bwd_D RAC-like GTP-binding pr 96.4 0.0022 7.6E-08 51.4 3.6 22 100-121 10-31 (182)
376 2qu8_A Putative nucleolar GTP- 96.4 0.0018 6.1E-08 54.9 3.1 22 100-121 31-52 (228)
377 3b9p_A CG5977-PA, isoform A; A 96.4 0.002 6.7E-08 56.8 3.6 26 97-122 53-78 (297)
378 2il1_A RAB12; G-protein, GDP, 96.4 0.0015 5.3E-08 53.6 2.6 22 100-121 28-49 (192)
379 2bcg_Y Protein YP2, GTP-bindin 96.4 0.0018 6.3E-08 53.5 3.1 22 100-121 10-31 (206)
380 1zj6_A ADP-ribosylation factor 96.4 0.0019 6.6E-08 52.5 3.2 21 100-120 18-38 (187)
381 3bgw_A DNAB-like replicative h 96.3 0.0075 2.6E-07 57.1 7.7 33 88-120 187-219 (444)
382 1x3s_A RAS-related protein RAB 96.3 0.002 6.9E-08 52.3 3.3 22 100-121 17-38 (195)
383 1a7j_A Phosphoribulokinase; tr 96.3 0.00094 3.2E-08 59.8 1.3 26 97-122 4-29 (290)
384 4edh_A DTMP kinase, thymidylat 96.3 0.0019 6.4E-08 55.3 3.1 29 96-124 4-32 (213)
385 2h57_A ADP-ribosylation factor 96.3 0.0014 4.9E-08 53.5 2.3 23 100-122 23-45 (190)
386 3reg_A RHO-like small GTPase; 96.3 0.002 7E-08 52.7 3.3 22 100-121 25-46 (194)
387 2f6r_A COA synthase, bifunctio 96.3 0.002 6.9E-08 57.1 3.5 23 98-120 75-97 (281)
388 3cph_A RAS-related protein SEC 96.3 0.0019 6.3E-08 53.5 3.0 22 100-121 22-43 (213)
389 2atv_A RERG, RAS-like estrogen 96.3 0.0019 6.5E-08 53.0 3.1 22 100-121 30-51 (196)
390 2o52_A RAS-related protein RAB 96.3 0.0018 6E-08 53.7 2.8 22 100-121 27-48 (200)
391 1zd9_A ADP-ribosylation factor 96.3 0.0021 7.1E-08 52.5 3.3 22 100-121 24-45 (188)
392 4bas_A ADP-ribosylation factor 96.3 0.0018 6.3E-08 52.8 2.9 22 100-121 19-40 (199)
393 2ew1_A RAS-related protein RAB 96.3 0.002 6.7E-08 53.9 3.1 22 100-121 28-49 (201)
394 1e4v_A Adenylate kinase; trans 96.3 0.0019 6.6E-08 54.3 3.1 22 100-121 2-23 (214)
395 2p5s_A RAS and EF-hand domain 96.3 0.0022 7.4E-08 52.9 3.3 22 100-121 30-51 (199)
396 2h17_A ADP-ribosylation factor 96.3 0.0018 6.2E-08 52.5 2.7 22 100-121 23-44 (181)
397 1jbk_A CLPB protein; beta barr 96.3 0.0026 8.7E-08 51.0 3.6 27 97-123 42-68 (195)
398 2iwr_A Centaurin gamma 1; ANK 96.3 0.0017 5.9E-08 52.1 2.4 22 100-121 9-30 (178)
399 2fv8_A H6, RHO-related GTP-bin 96.3 0.0022 7.5E-08 53.3 3.2 22 100-121 27-48 (207)
400 3v9p_A DTMP kinase, thymidylat 96.3 0.0018 6.3E-08 56.0 2.7 29 95-123 22-50 (227)
401 2fh5_B SR-beta, signal recogni 96.2 0.0024 8.3E-08 53.1 3.3 22 100-121 9-30 (214)
402 3c5c_A RAS-like protein 12; GD 96.2 0.0026 8.7E-08 52.1 3.3 22 100-121 23-44 (187)
403 1ltq_A Polynucleotide kinase; 96.2 0.0023 8E-08 56.5 3.3 22 99-120 3-24 (301)
404 1gwn_A RHO-related GTP-binding 96.2 0.0023 8E-08 53.5 3.1 22 100-121 30-51 (205)
405 2f7s_A C25KG, RAS-related prot 96.2 0.0025 8.5E-08 53.1 3.3 22 100-121 27-48 (217)
406 3def_A T7I23.11 protein; chlor 96.2 0.0024 8.1E-08 55.8 3.2 22 100-121 38-59 (262)
407 1ak2_A Adenylate kinase isoenz 96.2 0.0029 1E-07 54.1 3.7 25 97-121 15-39 (233)
408 2q3h_A RAS homolog gene family 96.2 0.0026 8.8E-08 52.3 3.2 22 100-121 22-43 (201)
409 2aka_B Dynamin-1; fusion prote 96.2 0.0022 7.5E-08 56.4 2.9 23 100-122 28-50 (299)
410 2j1l_A RHO-related GTP-binding 96.2 0.0025 8.5E-08 53.4 3.1 21 100-120 36-56 (214)
411 1h65_A Chloroplast outer envel 96.2 0.0024 8.4E-08 55.9 3.2 23 100-122 41-63 (270)
412 3llu_A RAS-related GTP-binding 96.2 0.0026 9E-08 52.4 3.1 23 100-122 22-44 (196)
413 2h92_A Cytidylate kinase; ross 96.2 0.0022 7.4E-08 53.9 2.6 24 98-121 3-26 (219)
414 3cnl_A YLQF, putative uncharac 96.2 0.0028 9.5E-08 55.9 3.4 29 99-127 100-129 (262)
415 3a8t_A Adenylate isopentenyltr 96.2 0.0032 1.1E-07 57.8 3.9 26 97-122 39-64 (339)
416 2fu5_C RAS-related protein RAB 96.2 0.0017 5.8E-08 52.4 1.9 21 100-120 10-30 (183)
417 3d3q_A TRNA delta(2)-isopenten 96.2 0.0026 8.9E-08 58.4 3.2 24 99-122 8-31 (340)
418 2gco_A H9, RHO-related GTP-bin 96.2 0.0027 9.4E-08 52.5 3.1 22 100-121 27-48 (201)
419 1l8q_A Chromosomal replication 96.1 0.0024 8.2E-08 57.2 2.9 25 99-123 38-62 (324)
420 2hf9_A Probable hydrogenase ni 96.1 0.0028 9.4E-08 53.3 3.1 23 100-122 40-62 (226)
421 3zvl_A Bifunctional polynucleo 96.1 0.0028 9.6E-08 59.4 3.5 28 93-120 253-280 (416)
422 3lv8_A DTMP kinase, thymidylat 96.1 0.003 1E-07 55.0 3.4 28 96-123 25-52 (236)
423 2atx_A Small GTP binding prote 96.1 0.003 1E-07 51.6 3.2 22 100-121 20-41 (194)
424 2b6h_A ADP-ribosylation factor 96.1 0.0026 8.9E-08 52.4 2.8 23 98-120 29-51 (192)
425 4tmk_A Protein (thymidylate ki 96.1 0.0034 1.2E-07 53.7 3.5 30 97-126 2-31 (213)
426 3exa_A TRNA delta(2)-isopenten 96.0 0.0036 1.2E-07 57.0 3.6 25 98-122 3-27 (322)
427 2qmh_A HPR kinase/phosphorylas 96.0 0.0047 1.6E-07 52.7 4.1 32 88-120 25-56 (205)
428 3umf_A Adenylate kinase; rossm 96.0 0.0031 1.1E-07 54.2 3.0 30 92-121 23-52 (217)
429 3tmk_A Thymidylate kinase; pho 96.0 0.0038 1.3E-07 53.6 3.5 32 96-127 3-34 (216)
430 2v3c_C SRP54, signal recogniti 96.0 0.0014 4.8E-08 62.1 0.8 42 93-134 92-136 (432)
431 2ocp_A DGK, deoxyguanosine kin 96.0 0.0037 1.3E-07 53.6 3.5 25 98-122 2-26 (241)
432 2g3y_A GTP-binding protein GEM 96.0 0.0035 1.2E-07 53.2 3.3 22 100-121 39-60 (211)
433 3h4m_A Proteasome-activating n 96.0 0.0037 1.2E-07 54.6 3.5 26 96-121 49-74 (285)
434 4dcu_A GTP-binding protein ENG 96.0 0.0026 8.9E-08 60.2 2.7 22 100-121 25-46 (456)
435 4djt_A GTP-binding nuclear pro 96.0 0.0016 5.4E-08 54.4 0.8 22 100-121 13-34 (218)
436 2hup_A RAS-related protein RAB 96.0 0.0038 1.3E-07 51.7 3.2 22 100-121 31-52 (201)
437 3cpj_B GTP-binding protein YPT 96.0 0.0037 1.2E-07 52.6 3.1 22 100-121 15-36 (223)
438 3ld9_A DTMP kinase, thymidylat 96.0 0.0045 1.5E-07 53.5 3.6 28 96-123 19-46 (223)
439 2p65_A Hypothetical protein PF 96.0 0.0034 1.2E-07 50.4 2.7 26 98-123 43-68 (187)
440 1njg_A DNA polymerase III subu 95.9 0.0041 1.4E-07 51.6 3.2 24 100-123 47-70 (250)
441 4gzl_A RAS-related C3 botulinu 95.9 0.004 1.4E-07 51.7 3.1 21 100-120 32-52 (204)
442 2i1q_A DNA repair and recombin 95.9 0.0045 1.5E-07 55.6 3.6 27 94-120 94-120 (322)
443 2x77_A ADP-ribosylation factor 95.9 0.0025 8.5E-08 51.8 1.8 22 99-120 23-44 (189)
444 3crm_A TRNA delta(2)-isopenten 95.9 0.004 1.4E-07 56.8 3.3 24 99-122 6-29 (323)
445 1ypw_A Transitional endoplasmi 95.9 0.0013 4.4E-08 66.9 0.0 43 92-135 505-547 (806)
446 2yc2_C IFT27, small RAB-relate 95.9 0.0017 5.7E-08 53.3 0.6 22 100-121 22-43 (208)
447 1p5z_B DCK, deoxycytidine kina 95.9 0.0029 9.8E-08 55.1 2.1 27 96-122 22-48 (263)
448 3dm5_A SRP54, signal recogniti 95.9 0.0047 1.6E-07 58.7 3.7 34 97-130 99-133 (443)
449 3q3j_B RHO-related GTP-binding 95.8 0.0049 1.7E-07 51.7 3.3 22 100-121 29-50 (214)
450 2qz4_A Paraplegin; AAA+, SPG7, 95.8 0.0054 1.8E-07 52.6 3.6 24 99-122 40-63 (262)
451 2j0v_A RAC-like GTP-binding pr 95.8 0.0047 1.6E-07 51.2 3.1 22 100-121 11-32 (212)
452 1u94_A RECA protein, recombina 95.8 0.0057 1.9E-07 56.4 3.9 38 95-132 60-99 (356)
453 2r62_A Cell division protease 95.8 0.0014 4.8E-08 56.9 -0.3 22 101-122 47-68 (268)
454 1sxj_D Activator 1 41 kDa subu 95.7 0.0018 6E-08 58.1 0.2 36 88-123 46-83 (353)
455 3foz_A TRNA delta(2)-isopenten 95.7 0.0061 2.1E-07 55.4 3.6 24 98-121 10-33 (316)
456 2orw_A Thymidine kinase; TMTK, 95.7 0.0083 2.8E-07 49.8 4.0 25 97-121 2-27 (184)
457 1puj_A YLQF, conserved hypothe 95.6 0.0066 2.3E-07 54.0 3.5 26 98-123 120-145 (282)
458 2zts_A Putative uncharacterize 95.6 0.008 2.7E-07 50.9 3.8 24 95-118 27-50 (251)
459 3sr0_A Adenylate kinase; phosp 95.6 0.0066 2.3E-07 51.5 3.2 23 100-122 2-24 (206)
460 3tqf_A HPR(Ser) kinase; transf 95.5 0.011 3.7E-07 49.4 4.2 32 88-120 7-38 (181)
461 2hjg_A GTP-binding protein ENG 95.5 0.0059 2E-07 57.4 2.7 22 100-121 5-26 (436)
462 3p32_A Probable GTPase RV1496/ 95.5 0.0087 3E-07 54.7 3.8 25 99-123 80-104 (355)
463 3eph_A TRNA isopentenyltransfe 95.4 0.0081 2.8E-07 56.4 3.4 24 99-122 3-26 (409)
464 3r7w_A Gtpase1, GTP-binding pr 95.4 0.0076 2.6E-07 53.9 3.1 23 99-121 4-26 (307)
465 3ec1_A YQEH GTPase; atnos1, at 95.4 0.0071 2.4E-07 55.8 3.0 27 97-123 161-187 (369)
466 3gj0_A GTP-binding nuclear pro 95.4 0.0056 1.9E-07 51.2 2.1 22 100-121 17-39 (221)
467 3th5_A RAS-related C3 botulinu 94.4 0.0027 9.3E-08 52.5 0.0 21 100-120 32-52 (204)
468 1wxq_A GTP-binding protein; st 95.4 0.0079 2.7E-07 56.2 3.1 22 100-121 2-23 (397)
469 2v1u_A Cell division control p 95.3 0.0073 2.5E-07 54.4 2.6 28 96-123 42-69 (387)
470 2chg_A Replication factor C sm 95.3 0.0093 3.2E-07 48.9 3.0 22 101-122 41-62 (226)
471 4hlc_A DTMP kinase, thymidylat 95.3 0.011 3.6E-07 50.1 3.4 26 98-123 2-27 (205)
472 3geh_A MNME, tRNA modification 95.3 0.0063 2.2E-07 58.0 2.1 26 96-121 222-247 (462)
473 3n70_A Transport activator; si 95.3 0.01 3.5E-07 46.9 3.0 27 97-123 23-49 (145)
474 2x2e_A Dynamin-1; nitration, h 95.2 0.006 2.1E-07 55.7 1.9 22 100-121 33-54 (353)
475 3h2y_A GTPase family protein; 95.2 0.0079 2.7E-07 55.5 2.6 26 97-122 159-184 (368)
476 3syl_A Protein CBBX; photosynt 95.2 0.012 4E-07 51.9 3.6 27 97-123 66-92 (309)
477 1lnz_A SPO0B-associated GTP-bi 95.1 0.01 3.5E-07 54.3 3.0 31 91-121 151-181 (342)
478 2qpt_A EH domain-containing pr 95.1 0.0098 3.4E-07 57.9 2.9 22 100-121 67-88 (550)
479 1f5n_A Interferon-induced guan 95.1 0.0095 3.2E-07 58.6 2.8 24 99-122 39-62 (592)
480 3l0i_B RAS-related protein RAB 95.1 0.002 6.7E-08 53.2 -1.8 21 100-120 35-55 (199)
481 3uk6_A RUVB-like 2; hexameric 95.0 0.016 5.6E-07 52.3 3.9 36 97-132 69-105 (368)
482 1xp8_A RECA protein, recombina 94.9 0.016 5.5E-07 53.5 3.8 29 94-122 70-98 (366)
483 3gmt_A Adenylate kinase; ssgci 94.9 0.015 5.1E-07 50.5 3.3 22 100-121 10-31 (230)
484 3sjy_A Translation initiation 94.8 0.015 5.2E-07 54.0 3.2 23 100-122 10-32 (403)
485 1m8p_A Sulfate adenylyltransfe 94.7 0.017 5.8E-07 56.5 3.6 37 96-132 394-433 (573)
486 3t15_A Ribulose bisphosphate c 94.7 0.017 6E-07 51.2 3.4 24 99-122 37-60 (293)
487 1ofh_A ATP-dependent HSL prote 94.7 0.016 5.4E-07 50.7 3.1 24 99-122 51-74 (310)
488 2qgz_A Helicase loader, putati 94.7 0.018 6.2E-07 51.7 3.5 26 98-123 152-177 (308)
489 3hws_A ATP-dependent CLP prote 94.7 0.014 4.7E-07 53.2 2.8 25 98-122 51-75 (363)
490 1d2n_A N-ethylmaleimide-sensit 94.7 0.016 5.3E-07 50.4 3.0 22 100-121 66-87 (272)
491 1xwi_A SKD1 protein; VPS4B, AA 94.7 0.017 6E-07 52.0 3.4 26 97-122 44-69 (322)
492 2qby_B CDC6 homolog 3, cell di 94.7 0.018 6.3E-07 52.0 3.6 26 98-123 45-70 (384)
493 2orv_A Thymidine kinase; TP4A 94.7 0.15 5.1E-06 44.3 9.1 34 195-229 89-122 (234)
494 2j69_A Bacterial dynamin-like 94.7 0.017 5.8E-07 57.8 3.5 27 96-122 67-93 (695)
495 1mky_A Probable GTP-binding pr 94.7 0.017 5.7E-07 54.3 3.3 22 100-121 3-24 (439)
496 2hjg_A GTP-binding protein ENG 94.7 0.017 5.9E-07 54.2 3.3 23 100-122 177-199 (436)
497 1x6v_B Bifunctional 3'-phospho 94.6 0.018 6.3E-07 56.9 3.6 37 97-133 51-89 (630)
498 1g8f_A Sulfate adenylyltransfe 94.6 0.016 5.6E-07 55.9 3.1 28 96-123 393-420 (511)
499 3d8b_A Fidgetin-like protein 1 94.5 0.022 7.6E-07 51.9 3.6 26 96-121 115-140 (357)
500 2vhj_A Ntpase P4, P4; non- hyd 94.5 0.02 6.8E-07 52.3 3.2 27 94-120 119-145 (331)
No 1
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=1.2e-44 Score=325.72 Aligned_cols=195 Identities=15% Similarity=0.182 Sum_probs=165.4
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----C
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----S 138 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~ 138 (273)
.+++++|++++| +++++ |++|||+|++||++||+||||||||||+|+|+|+++ ++|+|.++|+++.. .
T Consensus 10 ~~l~~~~l~~~~--~~~~v----L~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~ 83 (266)
T 4g1u_C 10 ALLEASHLHYHV--QQQAL----INDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKAL 83 (266)
T ss_dssp CEEEEEEEEEEE--TTEEE----EEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHH
T ss_pred ceEEEEeEEEEe--CCeeE----EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHH
Confidence 479999999988 55777 999999999999999999999999999999999999 99999999999864 3
Q ss_pred CccEEEEeccchhhhccCCcccccccccC---------CHHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cC-
Q 024032 139 SHTITMYMEEHNVMRSLQSGFCVYDSRGF---------NYNRVHEGLEELS---------SWMSEGVHHNQ---RC-LR- 195 (273)
Q Consensus 139 ~~~i~~v~q~~~~~~~~~~~~tv~en~~~---------~~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~- 195 (273)
++.+++++|++.+ .+.+||+||..+ ..+++.++++.++ .+||||||||. |+ +.
T Consensus 84 ~~~i~~v~q~~~~----~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~ 159 (266)
T 4g1u_C 84 ARTRAVMRQYSEL----AFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQL 159 (266)
T ss_dssp HHHEEEECSCCCC----CSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHT
T ss_pred hheEEEEecCCcc----CCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcc
Confidence 4568999998875 456799998321 2456777888776 67999999987 44 56
Q ss_pred -----CCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 196 -----SDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 196 -----~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
+|++|||||||+|||+. +.++++.++.++|||+| .+||++++|++|++++.|+++++++.+
T Consensus 160 ~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~~ 239 (266)
T 4g1u_C 160 WQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLNAE 239 (266)
T ss_dssp CCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHCCHH
T ss_pred cccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHhCcH
Confidence 99999999999999999 34566766546799888 568999999999999999999999888
Q ss_pred hhHHHhCCceEEE
Q 024032 257 GLRKCSKISFCIL 269 (273)
Q Consensus 257 ~l~~~~~~~~~~~ 269 (273)
.+.+.|+.+..+.
T Consensus 240 ~l~~~~~~~~~~~ 252 (266)
T 4g1u_C 240 TLTQWYQADLGVS 252 (266)
T ss_dssp HHHHHCCSCEEEE
T ss_pred HHHHHhCCCcEEe
Confidence 8999998876543
No 2
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=1e-44 Score=332.23 Aligned_cols=208 Identities=18% Similarity=0.155 Sum_probs=167.2
Q ss_pred cchhhhhhhhHHHHHHHhchhhh--------ccCCCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCC
Q 024032 37 LDLPNVSTLTPRLRVLREMERLA--------LIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSG 108 (273)
Q Consensus 37 ~~~~~~~~~~~r~~~~~~~~~~~--------~~~~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnG 108 (273)
.+++.+.++..|+.++++.++.. .....+.++++||+|+|+. +.++ |+++||+|++||++||+||||
T Consensus 16 ~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~-~~~v----L~~isl~i~~Ge~vaivG~sG 90 (306)
T 3nh6_A 16 PRGSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYAD-GRET----LQDVSFTVMPGQTLALVGPSG 90 (306)
T ss_dssp ---CCTTCCHHHHHHHHHHHHSCCCCTTCBCCCCSSCCEEEEEEEEESST-TCEE----EEEEEEEECTTCEEEEESSSC
T ss_pred hhHHHHHHHHHHHHHHHhCCccccccccccccCCCCCeEEEEEEEEEcCC-CCce----eeeeeEEEcCCCEEEEECCCC
Confidence 34577888999999998755421 1112346999999999963 4567 999999999999999999999
Q ss_pred ChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCccccccccc-----CCHHHHHHHHH
Q 024032 109 SGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSRG-----FNYNRVHEGLE 177 (273)
Q Consensus 109 sGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~~-----~~~~~~~~~l~ 177 (273)
||||||+++|+|+++ ++|+|.++|+++.. +++.+++++|++.+ |..||+||.. ...+++.++++
T Consensus 91 sGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~l-----f~~Tv~eNi~~~~~~~~~~~~~~~~~ 165 (306)
T 3nh6_A 91 AGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVL-----FNDTIADNIRYGRVTAGNDEVEAAAQ 165 (306)
T ss_dssp HHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCC-----CSEEHHHHHHTTSTTCCHHHHHHHHH
T ss_pred chHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCcc-----CcccHHHHHHhhcccCCHHHHHHHHH
Confidence 999999999999999 99999999999875 46789999999874 4569999943 23555666655
Q ss_pred Hhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEE
Q 024032 178 ELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMV 227 (273)
Q Consensus 178 ~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tii 227 (273)
.++ .+||||||||. |+ +++|+||||||||++||+. +.++++.+ ++|+|
T Consensus 166 ~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~--~~Tvi 243 (306)
T 3nh6_A 166 AAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA--NRTTI 243 (306)
T ss_dssp HHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT--TSEEE
T ss_pred HhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC--CCEEE
Confidence 543 47999999987 44 7899999999999999999 33455544 78988
Q ss_pred Ec-------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 228 VS-------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 228 iv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
+| ..||+|++|++|+|++.|+++++++..
T Consensus 244 ~itH~l~~~~~aD~i~vl~~G~iv~~G~~~el~~~~ 279 (306)
T 3nh6_A 244 VVAHRLSTVVNADQILVIKDGCIVERGRHEALLSRG 279 (306)
T ss_dssp EECCSHHHHHTCSEEEEEETTEEEEEECHHHHHHHT
T ss_pred EEEcChHHHHcCCEEEEEECCEEEEECCHHHHHhcC
Confidence 88 348999999999999999999998643
No 3
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=1e-44 Score=338.91 Aligned_cols=185 Identities=20% Similarity=0.265 Sum_probs=157.2
Q ss_pred CCceEEEEEEEEeecCC--eeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC---
Q 024032 64 DGLNELRHKFLSYRSGD--FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN--- 137 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~--~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~--- 137 (273)
..+++++|++++|..+. ..+ |++|||+|++||++||+||||||||||+|+|+|+++ ++|+|.++|+++..
T Consensus 22 ~~mi~v~~ls~~y~~~~~~~~a----L~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~ 97 (366)
T 3tui_C 22 KHMIKLSNITKVFHQGTRTIQA----LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSE 97 (366)
T ss_dssp -CCEEEEEEEEEEECSSSEEEE----EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCH
T ss_pred CceEEEEeEEEEeCCCCCCeEE----EEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCH
Confidence 45899999999997543 345 999999999999999999999999999999999999 99999999999864
Q ss_pred -----CCccEEEEeccchhhhccCCccccccccc-------CC----HHHHHHHHHHhc---------ccCCHHHHHHH-
Q 024032 138 -----SSHTITMYMEEHNVMRSLQSGFCVYDSRG-------FN----YNRVHEGLEELS---------SWMSEGVHHNQ- 191 (273)
Q Consensus 138 -----~~~~i~~v~q~~~~~~~~~~~~tv~en~~-------~~----~~~~~~~l~~~~---------~~LSgGqkq~~- 191 (273)
.++.++|+||++.+ ++.+||+||.. .+ .+++.++++.++ .+||||||||.
T Consensus 98 ~~~~~~r~~Ig~v~Q~~~l----~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVa 173 (366)
T 3tui_C 98 SELTKARRQIGMIFQHFNL----LSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVA 173 (366)
T ss_dssp HHHHHHHTTEEEECSSCCC----CTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHH
T ss_pred HHHHHHhCcEEEEeCCCcc----CCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHH
Confidence 25679999999876 45569999832 22 234667777776 78999999987
Q ss_pred --Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhcc
Q 024032 192 --RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFS 254 (273)
Q Consensus 192 --r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~ 254 (273)
|+ +.+|++|||||||++||+. +.+++++++.|+|||+| .+||||++|++|++++.|++++++.
T Consensus 174 IArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~~ 253 (366)
T 3tui_C 174 IARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 253 (366)
T ss_dssp HHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHHHS
T ss_pred HHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 44 7899999999999999999 44667766669999999 5699999999999999999999987
Q ss_pred Ch
Q 024032 255 AP 256 (273)
Q Consensus 255 ~~ 256 (273)
++
T Consensus 254 ~p 255 (366)
T 3tui_C 254 HP 255 (366)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 4
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=3.8e-45 Score=330.48 Aligned_cols=191 Identities=14% Similarity=0.173 Sum_probs=157.7
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCC-------
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSG------- 136 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~------- 136 (273)
..++++|++++|+. +..+ |++|||+|++||++||+||||||||||+|+|+|+++ ++|+|.++|+++.
T Consensus 6 ~~l~i~~ls~~y~~-~~~~----L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~ 80 (275)
T 3gfo_A 6 YILKVEELNYNYSD-GTHA----LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIM 80 (275)
T ss_dssp EEEEEEEEEEECTT-SCEE----EEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHH
T ss_pred cEEEEEEEEEEECC-CCeE----EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHH
Confidence 47999999999953 3446 999999999999999999999999999999999999 9999999999983
Q ss_pred CCCccEEEEeccchhhhccCCccccccccc-------CCH----HHHHHHHHHhc---------ccCCHHHHHHH---Hh
Q 024032 137 NSSHTITMYMEEHNVMRSLQSGFCVYDSRG-------FNY----NRVHEGLEELS---------SWMSEGVHHNQ---RC 193 (273)
Q Consensus 137 ~~~~~i~~v~q~~~~~~~~~~~~tv~en~~-------~~~----~~~~~~l~~~~---------~~LSgGqkq~~---r~ 193 (273)
..++.+++++|++.. .++..||+||.. .+. +++.++++.++ .+||||||||. |+
T Consensus 81 ~~~~~ig~v~Q~~~~---~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAra 157 (275)
T 3gfo_A 81 KLRESIGIVFQDPDN---QLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGV 157 (275)
T ss_dssp HHHHSEEEECSSGGG---TCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHH
T ss_pred HHhCcEEEEEcCccc---ccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHH
Confidence 135679999999753 145679999832 232 34666777766 78999999987 33
Q ss_pred -cCCCCEEEEcCcCCCCCHH------HHHHHHH-hcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChh
Q 024032 194 -LRSDDCALMKNDAEIDDLK------SSPKYVL-RRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPG 257 (273)
Q Consensus 194 -l~~p~iLlLDEPts~LD~~------~~l~~l~-~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~ 257 (273)
+.+|++|||||||+|||+. +.++++. ++ |+|||+| .+||+|++|++|++++.|+++++++++.
T Consensus 158 L~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~-g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~~ 236 (275)
T 3gfo_A 158 LVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKEL-GITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKE 236 (275)
T ss_dssp HTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHH-CCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTHHHH
T ss_pred HHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhC-CCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhcCHH
Confidence 7899999999999999999 3456666 44 8999998 5689999999999999999999987766
Q ss_pred hHHHhCC
Q 024032 258 LRKCSKI 264 (273)
Q Consensus 258 l~~~~~~ 264 (273)
+.+.|++
T Consensus 237 ~~~~~~~ 243 (275)
T 3gfo_A 237 VIRKVNL 243 (275)
T ss_dssp HHHHHHH
T ss_pred HHHHcCC
Confidence 5555543
No 5
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=4.9e-44 Score=333.84 Aligned_cols=182 Identities=17% Similarity=0.243 Sum_probs=154.5
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeC----CC---
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSS----GN--- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i----~~--- 137 (273)
.++++|++++| ++..+ |+++||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++ ..
T Consensus 4 ~l~i~~ls~~y--~~~~~----L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~ 77 (359)
T 3fvq_A 4 ALHIGHLSKSF--QNTPV----LNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPV 77 (359)
T ss_dssp CEEEEEEEEEE--TTEEE----EEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCG
T ss_pred EEEEEeEEEEE--CCEEE----EEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccch
Confidence 68999999999 55667 999999999999999999999999999999999999 999999999987 22
Q ss_pred CCccEEEEeccchhhhccCCcccccccccC-------C----HHHHHHHHHHhc---------ccCCHHHHHHH---Hh-
Q 024032 138 SSHTITMYMEEHNVMRSLQSGFCVYDSRGF-------N----YNRVHEGLEELS---------SWMSEGVHHNQ---RC- 193 (273)
Q Consensus 138 ~~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~----~~~~~~~l~~~~---------~~LSgGqkq~~---r~- 193 (273)
.++.++|++|++.+| +.+||+||..+ . .+++.++++.++ .+||||||||+ |+
T Consensus 78 ~~r~ig~vfQ~~~l~----p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL 153 (359)
T 3fvq_A 78 RERRLGYLVQEGVLF----PHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARAL 153 (359)
T ss_dssp GGSCCEEECTTCCCC----TTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHH
T ss_pred hhCCEEEEeCCCcCC----CCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHH
Confidence 356799999998864 44599998422 1 345677788776 78999999987 44
Q ss_pred cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChh
Q 024032 194 LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPG 257 (273)
Q Consensus 194 l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~ 257 (273)
+.+|++|||||||++||+. ..++++.++.|+|+|+| .+||||++|++|+|++.|++++++..+.
T Consensus 154 ~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~p~ 231 (359)
T 3fvq_A 154 APDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQPA 231 (359)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCS
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhCcc
Confidence 7899999999999999999 22444555559999999 5689999999999999999999987654
No 6
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=1.1e-43 Score=333.69 Aligned_cols=181 Identities=18% Similarity=0.256 Sum_probs=154.6
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC---CCcc
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---SSHT 141 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---~~~~ 141 (273)
.++++|++++| ++..+ |+++||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++.. .++.
T Consensus 3 ~l~~~~l~~~y--g~~~~----L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ 76 (381)
T 3rlf_A 3 SVQLQNVTKAW--GEVVV----SKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERG 76 (381)
T ss_dssp CEEEEEEEEEE--TTEEE----EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSC
T ss_pred EEEEEeEEEEE--CCEEE----EeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCC
Confidence 58999999999 55667 999999999999999999999999999999999999 99999999999864 3467
Q ss_pred EEEEeccchhhhccCCccccccccc-------CCH----HHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCC
Q 024032 142 ITMYMEEHNVMRSLQSGFCVYDSRG-------FNY----NRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSD 197 (273)
Q Consensus 142 i~~v~q~~~~~~~~~~~~tv~en~~-------~~~----~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p 197 (273)
+++++|++.++ +.+||+||.. .+. +++.++++.++ .+||||||||. |+ +.+|
T Consensus 77 ig~VfQ~~~l~----p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P 152 (381)
T 3rlf_A 77 VGMVFQSYALY----PHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEP 152 (381)
T ss_dssp EEEECTTCCCC----TTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCC
T ss_pred EEEEecCCcCC----CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCC
Confidence 99999999864 4459999843 232 34666777766 78999999987 44 7899
Q ss_pred CEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 198 DCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 198 ~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
++|||||||++||+. ..++++.++.|+|+|+| .+||||++|++|++++.|++++++..|
T Consensus 153 ~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~p 225 (381)
T 3rlf_A 153 SVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYP 225 (381)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCC
Confidence 999999999999999 34566665558999999 568999999999999999999998654
No 7
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=1.7e-43 Score=312.63 Aligned_cols=180 Identities=18% Similarity=0.225 Sum_probs=146.0
Q ss_pred ceEEEEEEEEeecCC--eeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCC----
Q 024032 66 LNELRHKFLSYRSGD--FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNS---- 138 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~--~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~---- 138 (273)
+++++|++++|+.+. .++ |+++||+|++||++||+||||||||||+|+|+|+++ ++|+|.++|+++...
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~----L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~ 76 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYA----LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDE 76 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEE----EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHH
T ss_pred CEEEEEEEEEeCCCCcceee----EEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHH
Confidence 378999999997543 346 999999999999999999999999999999999999 999999999998642
Q ss_pred -----CccEEEEeccchhhhccCCccccccccc----------CCH----HHHHHHHHHhc----------ccCCHHHHH
Q 024032 139 -----SHTITMYMEEHNVMRSLQSGFCVYDSRG----------FNY----NRVHEGLEELS----------SWMSEGVHH 189 (273)
Q Consensus 139 -----~~~i~~v~q~~~~~~~~~~~~tv~en~~----------~~~----~~~~~~l~~~~----------~~LSgGqkq 189 (273)
++.+++++|++.+ +..+||+||.. ... +++.++++.++ .+|||||||
T Consensus 77 ~~~~~~~~i~~v~Q~~~l----~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~Q 152 (235)
T 3tif_A 77 LTKIRRDKIGFVFQQFNL----IPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQ 152 (235)
T ss_dssp HHHHHHHHEEEECTTCCC----CTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHH
T ss_pred HHHHhhccEEEEecCCcc----CCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHH
Confidence 2359999999875 44559999831 222 33455666654 679999999
Q ss_pred HH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhh
Q 024032 190 NQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRL 252 (273)
Q Consensus 190 ~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l 252 (273)
|. |+ +.+|++|||||||+|||+. +.+++++++.|+|||+| .+||+|++|++|++++.++++++
T Consensus 153 Rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 153 RVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRGF 232 (235)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC--
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChhhh
Confidence 87 33 8999999999999999999 34566655448999999 56899999999999999887765
Q ss_pred c
Q 024032 253 F 253 (273)
Q Consensus 253 ~ 253 (273)
.
T Consensus 233 ~ 233 (235)
T 3tif_A 233 D 233 (235)
T ss_dssp -
T ss_pred c
Confidence 3
No 8
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=5.5e-43 Score=313.08 Aligned_cols=186 Identities=16% Similarity=0.185 Sum_probs=153.2
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCC------
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNS------ 138 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~------ 138 (273)
+++++|++++| +++++ |+++||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++...
T Consensus 7 ~l~i~~l~~~y--~~~~v----l~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 80 (257)
T 1g6h_A 7 ILRTENIVKYF--GEFKA----LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELY 80 (257)
T ss_dssp EEEEEEEEEEE--TTEEE----EEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHH
T ss_pred EEEEeeeEEEE--CCEee----EeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHH
Confidence 68999999999 45667 999999999999999999999999999999999999 999999999998542
Q ss_pred CccEEEEeccchhhhccCCccccccccc--------------------CC----HHHHHHHHHHhc---------ccCCH
Q 024032 139 SHTITMYMEEHNVMRSLQSGFCVYDSRG--------------------FN----YNRVHEGLEELS---------SWMSE 185 (273)
Q Consensus 139 ~~~i~~v~q~~~~~~~~~~~~tv~en~~--------------------~~----~~~~~~~l~~~~---------~~LSg 185 (273)
++.+++++|++.+++ .+||+||.. .. .+++.++++.++ .+|||
T Consensus 81 ~~~i~~v~q~~~l~~----~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSg 156 (257)
T 1g6h_A 81 HYGIVRTFQTPQPLK----EMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSG 156 (257)
T ss_dssp HHTEEECCCCCGGGG----GSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCH
T ss_pred hCCEEEEccCCccCC----CCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCH
Confidence 356999999987643 348888721 11 134566777766 68999
Q ss_pred HHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeec
Q 024032 186 GVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLD 247 (273)
Q Consensus 186 Gqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g 247 (273)
|||||. |+ +.+|++|||||||+|||+. +.++++.++ |+|||++ .+||++++|++|++++.|
T Consensus 157 GqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g 235 (257)
T 1g6h_A 157 GQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK-GITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEG 235 (257)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCCSTTGGGCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHHHHHHhCCEEEEEECCEEEEEe
Confidence 999987 33 7999999999999999999 345666665 8999998 568999999999999999
Q ss_pred Chhh----hccChhhHHHh
Q 024032 248 ATKR----LFSAPGLRKCS 262 (273)
Q Consensus 248 ~~~~----l~~~~~l~~~~ 262 (273)
++++ +++++.+.+.|
T Consensus 236 ~~~~~~~~~~~~~~~~~~~ 254 (257)
T 1g6h_A 236 RGEEEIKNVLSDPKVVEIY 254 (257)
T ss_dssp ESHHHHHHHHHCHHHHHTT
T ss_pred CHHHhhhhhhcCHHHHHHh
Confidence 9999 76655554443
No 9
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1e-42 Score=308.36 Aligned_cols=187 Identities=14% Similarity=0.195 Sum_probs=153.3
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCC-----
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNS----- 138 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~----- 138 (273)
.+++++|++++| +++++ |+++||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++...
T Consensus 5 ~~l~~~~l~~~y--~~~~v----l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 78 (240)
T 1ji0_A 5 IVLEVQSLHVYY--GAIHA----IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVI 78 (240)
T ss_dssp EEEEEEEEEEEE--TTEEE----EEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHH
T ss_pred ceEEEEeEEEEE--CCeeE----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHH
Confidence 368999999999 44667 999999999999999999999999999999999999 999999999998542
Q ss_pred -CccEEEEeccchhhhccCCcccccccccC------C----HHHHHHHHHHh-c---------ccCCHHHHHHH---Hh-
Q 024032 139 -SHTITMYMEEHNVMRSLQSGFCVYDSRGF------N----YNRVHEGLEEL-S---------SWMSEGVHHNQ---RC- 193 (273)
Q Consensus 139 -~~~i~~v~q~~~~~~~~~~~~tv~en~~~------~----~~~~~~~l~~~-~---------~~LSgGqkq~~---r~- 193 (273)
++.++|++|++.+ +..+||+||..+ . .+.+.+.++.+ + .+||||||||. |+
T Consensus 79 ~~~~i~~v~q~~~l----~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL 154 (240)
T 1ji0_A 79 NRMGIALVPEGRRI----FPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRAL 154 (240)
T ss_dssp HHTTEEEECSSCCC----CTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHH
T ss_pred HhCCEEEEecCCcc----CCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHH
Confidence 3459999999875 345589888321 1 23345555555 2 68999999987 33
Q ss_pred cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChhhH
Q 024032 194 LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPGLR 259 (273)
Q Consensus 194 l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~l~ 259 (273)
+.+|++|||||||+|||+. +.++++.++ |+|||++ .+||++++|++|+++..|+++++++.+.+.
T Consensus 155 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~-g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~ 233 (240)
T 1ji0_A 155 MSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQE-GTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNEMVR 233 (240)
T ss_dssp TTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHT-TCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTCHHHH
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcCHHHH
Confidence 8999999999999999999 345666554 8999998 468999999999999999999998776665
Q ss_pred HHh
Q 024032 260 KCS 262 (273)
Q Consensus 260 ~~~ 262 (273)
+.|
T Consensus 234 ~~~ 236 (240)
T 1ji0_A 234 KAY 236 (240)
T ss_dssp HHH
T ss_pred HHh
Confidence 555
No 10
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=6.1e-43 Score=314.15 Aligned_cols=181 Identities=17% Similarity=0.232 Sum_probs=151.9
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCC--C----
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSG--N---- 137 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~--~---- 137 (273)
.+++++|++++| +++++ |+++||+|++||++||+||||||||||+|+|+|+++ ++|+|.++|+++. .
T Consensus 23 ~~l~i~~l~~~y--~~~~v----L~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~ 96 (263)
T 2olj_A 23 QMIDVHQLKKSF--GSLEV----LKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLN 96 (263)
T ss_dssp CSEEEEEEEEEE--TTEEE----EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHH
T ss_pred heEEEEeEEEEE--CCEEE----EEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHH
Confidence 369999999999 45667 999999999999999999999999999999999999 9999999999874 1
Q ss_pred -CCccEEEEeccchhhhccCCcccccccccC--------C----HHHHHHHHHHhc---------ccCCHHHHHHH---H
Q 024032 138 -SSHTITMYMEEHNVMRSLQSGFCVYDSRGF--------N----YNRVHEGLEELS---------SWMSEGVHHNQ---R 192 (273)
Q Consensus 138 -~~~~i~~v~q~~~~~~~~~~~~tv~en~~~--------~----~~~~~~~l~~~~---------~~LSgGqkq~~---r 192 (273)
.++.++|++|++.+ +..+||+||..+ . .+++.++++.++ .+||||||||. |
T Consensus 97 ~~~~~i~~v~Q~~~l----~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAr 172 (263)
T 2olj_A 97 KVREEVGMVFQRFNL----FPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIAR 172 (263)
T ss_dssp HHHHHEEEECSSCCC----CTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHH
T ss_pred HHhCcEEEEeCCCcC----CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHH
Confidence 24569999999775 445589888321 2 234566777776 68999999987 3
Q ss_pred h-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 193 C-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 193 ~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
+ +.+|++|||||||++||+. +.++++.++ |+|||++ .+||++++|++|++++.|++++++..+
T Consensus 173 aL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 250 (263)
T 2olj_A 173 ALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANE-GMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRP 250 (263)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 3 8999999999999999999 345666666 8999999 468999999999999999999997654
No 11
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=1.1e-42 Score=315.01 Aligned_cols=196 Identities=18% Similarity=0.157 Sum_probs=160.5
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCC--C----
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSG--N---- 137 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~--~---- 137 (273)
.+++++|++++| +++++ |+++||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++. .
T Consensus 20 ~~l~~~~l~~~y--~~~~v----L~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~ 93 (279)
T 2ihy_A 20 MLIQLDQIGRMK--QGKTI----LKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAE 93 (279)
T ss_dssp EEEEEEEEEEEE--TTEEE----EEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHH
T ss_pred ceEEEEeEEEEE--CCEEE----EEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHH
Confidence 369999999999 45667 999999999999999999999999999999999999 9999999999875 2
Q ss_pred -CCccEEEEeccchhhhccCCcccccccccC------------C---HHHHHHHHHHhc---------ccCCHHHHHHH-
Q 024032 138 -SSHTITMYMEEHNVMRSLQSGFCVYDSRGF------------N---YNRVHEGLEELS---------SWMSEGVHHNQ- 191 (273)
Q Consensus 138 -~~~~i~~v~q~~~~~~~~~~~~tv~en~~~------------~---~~~~~~~l~~~~---------~~LSgGqkq~~- 191 (273)
.++.+++++|++..+ +...+||+||..+ . .+++.++++.++ .+||||||||.
T Consensus 94 ~~~~~i~~v~Q~~~~~--~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~ 171 (279)
T 2ihy_A 94 TVRQHIGFVSHSLLEK--FQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVM 171 (279)
T ss_dssp HHHTTEEEECHHHHTT--SCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHH
T ss_pred HHcCcEEEEEcCcccc--cCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHH
Confidence 356799999987642 1223589888422 1 134566677766 68999999987
Q ss_pred --Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEE--EEc--------eeCCEEEEEeCCeEeeecChhhh
Q 024032 192 --RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAM--VVS--------NIAEIYKALKAGDSKPLDATKRL 252 (273)
Q Consensus 192 --r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~ti--iiv--------~~ad~i~vl~~G~i~~~g~~~~l 252 (273)
|+ +.+|++|||||||+|||+. +.++++.++ |+|| |++ .+||++++|++|++++.|+++++
T Consensus 172 lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~-g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 250 (279)
T 2ihy_A 172 IARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDS-YPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDI 250 (279)
T ss_dssp HHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH-CTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEHHHH
T ss_pred HHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHC-CCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 33 7999999999999999999 345666666 8888 888 46899999999999999999999
Q ss_pred ccChhhHHHhCCceEEE
Q 024032 253 FSAPGLRKCSKISFCIL 269 (273)
Q Consensus 253 ~~~~~l~~~~~~~~~~~ 269 (273)
++.+.+...|+.+..+.
T Consensus 251 ~~~~~~~~~~~~~~~~~ 267 (279)
T 2ihy_A 251 LTSENMSRFFQKNVAVQ 267 (279)
T ss_dssp CSHHHHHHHHTSCEEEE
T ss_pred hccHHHHHHhCCcceee
Confidence 88777888888765543
No 12
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=2.4e-42 Score=309.11 Aligned_cols=189 Identities=15% Similarity=0.145 Sum_probs=155.8
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC----C
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN----S 138 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~----~ 138 (273)
.+.++++|++++| +++++ |+++||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++.. .
T Consensus 13 ~~~l~i~~l~~~y--~~~~v----l~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~ 86 (256)
T 1vpl_A 13 MGAVVVKDLRKRI--GKKEI----LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEV 86 (256)
T ss_dssp -CCEEEEEEEEEE--TTEEE----EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHH
T ss_pred CCeEEEEEEEEEE--CCEEE----EEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHH
Confidence 3579999999999 45667 999999999999999999999999999999999999 99999999998753 3
Q ss_pred CccEEEEeccchhhhccCCccccccccc-------CCH----HHHHHHHHHhc---------ccCCHHHHHHH---Hh-c
Q 024032 139 SHTITMYMEEHNVMRSLQSGFCVYDSRG-------FNY----NRVHEGLEELS---------SWMSEGVHHNQ---RC-L 194 (273)
Q Consensus 139 ~~~i~~v~q~~~~~~~~~~~~tv~en~~-------~~~----~~~~~~l~~~~---------~~LSgGqkq~~---r~-l 194 (273)
++.++|++|++.+ +..+||+||.. ... +++.++++.++ .+||||||||. |+ +
T Consensus 87 ~~~i~~v~q~~~l----~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~ 162 (256)
T 1vpl_A 87 RKLISYLPEEAGA----YRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALM 162 (256)
T ss_dssp HTTEEEECTTCCC----CTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHT
T ss_pred hhcEEEEcCCCCC----CCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHH
Confidence 4679999999875 44569999832 122 34667777776 67999999987 33 8
Q ss_pred CCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhcc---Chh
Q 024032 195 RSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFS---APG 257 (273)
Q Consensus 195 ~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~---~~~ 257 (273)
.+|++|||||||+|||+. +.++++.++ |+|||++ .+||++++|++|+++..|+++++.+ ...
T Consensus 163 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~ 241 (256)
T 1vpl_A 163 VNPRLAILDEPTSGLDVLNAREVRKILKQASQE-GLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQN 241 (256)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHHTTCSS
T ss_pred cCCCEEEEeCCccccCHHHHHHHHHHHHHHHhC-CCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHHhcchhh
Confidence 999999999999999999 345666554 8999998 4689999999999999999999863 334
Q ss_pred hHHHhC
Q 024032 258 LRKCSK 263 (273)
Q Consensus 258 l~~~~~ 263 (273)
+.+.|.
T Consensus 242 l~~~~~ 247 (256)
T 1vpl_A 242 IEEVFE 247 (256)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 566554
No 13
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=1.6e-42 Score=323.98 Aligned_cols=189 Identities=14% Similarity=0.216 Sum_probs=157.8
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC---CCcc
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---SSHT 141 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---~~~~ 141 (273)
.++++|++++| +++++ |+++||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++.. .++.
T Consensus 3 ~l~~~~l~~~y--~~~~v----l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ 76 (359)
T 2yyz_A 3 SIRVVNLKKYF--GKVKA----VDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYRE 76 (359)
T ss_dssp CEEEEEEEEEE--TTEEE----EEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTT
T ss_pred EEEEEEEEEEE--CCEEE----EeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCc
Confidence 58999999999 45667 999999999999999999999999999999999999 99999999999864 3467
Q ss_pred EEEEeccchhhhccCCcccccccccC-------C----HHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCC
Q 024032 142 ITMYMEEHNVMRSLQSGFCVYDSRGF-------N----YNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSD 197 (273)
Q Consensus 142 i~~v~q~~~~~~~~~~~~tv~en~~~-------~----~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p 197 (273)
++|++|++.+++ .+||+||..+ + .+++.++++.++ .+||||||||. |+ +.+|
T Consensus 77 ig~v~Q~~~l~~----~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P 152 (359)
T 2yyz_A 77 VGMVFQNYALYP----HMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQP 152 (359)
T ss_dssp EEEECSSCCCCT----TSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred EEEEecCcccCC----CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 999999988644 4599998422 1 235677788776 68999999987 34 8999
Q ss_pred CEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChh---hHH
Q 024032 198 DCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPG---LRK 260 (273)
Q Consensus 198 ~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~---l~~ 260 (273)
++|||||||++||+. +.++++.++.|.|+|++ .+||+|++|++|++++.|++++++..+. ...
T Consensus 153 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~~~~ 232 (359)
T 2yyz_A 153 KVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPKNMFVAS 232 (359)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBHHHHH
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcccHHHHH
Confidence 999999999999999 33556655458999999 4689999999999999999999987653 334
Q ss_pred HhCC
Q 024032 261 CSKI 264 (273)
Q Consensus 261 ~~~~ 264 (273)
.++.
T Consensus 233 ~~g~ 236 (359)
T 2yyz_A 233 FIGN 236 (359)
T ss_dssp HSSS
T ss_pred HhCC
Confidence 4554
No 14
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=1.1e-42 Score=312.23 Aligned_cols=180 Identities=17% Similarity=0.204 Sum_probs=150.3
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-------
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------- 137 (273)
+++++|++++| +++++ |+++||+|++||++||+||||||||||+|+|+|+++ ++|+|.++|+++..
T Consensus 6 ~l~i~~l~~~y--~~~~v----l~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 79 (262)
T 1b0u_A 6 KLHVIDLHKRY--GGHEV----LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQ 79 (262)
T ss_dssp CEEEEEEEEEE--TTEEE----EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSS
T ss_pred eEEEeeEEEEE--CCEEE----EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccccccccc
Confidence 69999999999 45667 999999999999999999999999999999999999 99999999998751
Q ss_pred -----------CCccEEEEeccchhhhccCCcccccccccC--------C----HHHHHHHHHHhc----------ccCC
Q 024032 138 -----------SSHTITMYMEEHNVMRSLQSGFCVYDSRGF--------N----YNRVHEGLEELS----------SWMS 184 (273)
Q Consensus 138 -----------~~~~i~~v~q~~~~~~~~~~~~tv~en~~~--------~----~~~~~~~l~~~~----------~~LS 184 (273)
.++.+++++|++.+ +..+||+||..+ . .+++.++++.++ .+||
T Consensus 80 ~~~~~~~~~~~~~~~i~~v~Q~~~l----~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LS 155 (262)
T 1b0u_A 80 LKVADKNQLRLLRTRLTMVFQHFNL----WSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLS 155 (262)
T ss_dssp EEESCHHHHHHHHHHEEEECSSCCC----CTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSC
T ss_pred ccccChhhHHHHhcceEEEecCccc----CCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCC
Confidence 24569999999765 445589888321 2 234556666654 5799
Q ss_pred HHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeee
Q 024032 185 EGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPL 246 (273)
Q Consensus 185 gGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~ 246 (273)
||||||. |+ +.+|++|||||||+|||+. +.++++.++ |+|||++ .+||++++|++|++++.
T Consensus 156 gGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~ 234 (262)
T 1b0u_A 156 GGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEE 234 (262)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCCEEEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999987 33 7999999999999999999 345666665 8999998 46899999999999999
Q ss_pred cChhhhccCh
Q 024032 247 DATKRLFSAP 256 (273)
Q Consensus 247 g~~~~l~~~~ 256 (273)
|+++++++++
T Consensus 235 g~~~~~~~~~ 244 (262)
T 1b0u_A 235 GDPEQVFGNP 244 (262)
T ss_dssp ECHHHHHHSC
T ss_pred CCHHHHHhCc
Confidence 9999998654
No 15
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=8.8e-43 Score=325.14 Aligned_cols=185 Identities=18% Similarity=0.246 Sum_probs=154.8
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC---CC
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---SS 139 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---~~ 139 (273)
...++++|++++|. +++++ |+++||+|++||+++|+||||||||||||+|+|+++ ++|+|.++|+++.. .+
T Consensus 12 ~~~l~~~~l~~~y~-g~~~v----l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~ 86 (355)
T 1z47_A 12 SMTIEFVGVEKIYP-GGARS----VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQK 86 (355)
T ss_dssp CEEEEEEEEEECCT-TSTTC----EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGG
T ss_pred CceEEEEEEEEEEc-CCCEE----EeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhh
Confidence 34799999999983 33445 999999999999999999999999999999999999 99999999999853 45
Q ss_pred ccEEEEeccchhhhccCCcccccccccC-------C----HHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cC
Q 024032 140 HTITMYMEEHNVMRSLQSGFCVYDSRGF-------N----YNRVHEGLEELS---------SWMSEGVHHNQ---RC-LR 195 (273)
Q Consensus 140 ~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~----~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~ 195 (273)
+.++|++|++.++ ..+||+||..+ + .+++.++++.++ .+||||||||. |+ +.
T Consensus 87 r~ig~v~Q~~~l~----~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~ 162 (355)
T 1z47_A 87 RNVGLVFQNYALF----QHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAP 162 (355)
T ss_dssp SSEEEECGGGCCC----TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTT
T ss_pred CcEEEEecCcccC----CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHc
Confidence 6799999998764 44599998422 2 234667777776 68999999987 34 79
Q ss_pred CCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChh
Q 024032 196 SDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPG 257 (273)
Q Consensus 196 ~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~ 257 (273)
+|++|||||||++||+. +.++++.++.|+|+|+| .+||+|++|++|++++.|++++++..+.
T Consensus 163 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~ 238 (355)
T 1z47_A 163 RPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKPG 238 (355)
T ss_dssp CCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCS
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 99999999999999999 34556655558999998 5689999999999999999999987653
No 16
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.7e-42 Score=324.03 Aligned_cols=189 Identities=17% Similarity=0.269 Sum_probs=157.3
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC---CCcc
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---SSHT 141 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---~~~~ 141 (273)
.++++|++++| +++++ |+++||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++.. .++.
T Consensus 3 ~l~~~~l~~~y--~~~~v----l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ 76 (362)
T 2it1_A 3 EIKLENIVKKF--GNFTA----LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRN 76 (362)
T ss_dssp CEEEEEEEEES--SSSEE----EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTT
T ss_pred EEEEEeEEEEE--CCEEE----EEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCc
Confidence 58999999998 45567 999999999999999999999999999999999999 99999999999854 3467
Q ss_pred EEEEeccchhhhccCCcccccccccC-------C----HHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCC
Q 024032 142 ITMYMEEHNVMRSLQSGFCVYDSRGF-------N----YNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSD 197 (273)
Q Consensus 142 i~~v~q~~~~~~~~~~~~tv~en~~~-------~----~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p 197 (273)
++|++|++.+| ..+||+||..+ . .+++.++++.++ .+||||||||. |+ +.+|
T Consensus 77 ig~v~Q~~~l~----~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P 152 (362)
T 2it1_A 77 VGLVFQNWALY----PHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEP 152 (362)
T ss_dssp EEEECTTCCCC----TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred EEEEecCcccC----CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCC
Confidence 99999998864 44599998422 2 234667777776 68999999987 34 7999
Q ss_pred CEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChh---hHH
Q 024032 198 DCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPG---LRK 260 (273)
Q Consensus 198 ~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~---l~~ 260 (273)
++|||||||++||+. +.++++.++.|+|+|+| .+||+|++|++|++++.|++++++..+. ...
T Consensus 153 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~p~~~~~~~ 232 (362)
T 2it1_A 153 EVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKPKYKFVGG 232 (362)
T ss_dssp SEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBHHHHH
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccchHHHH
Confidence 999999999999999 34566655458999999 5689999999999999999999987653 334
Q ss_pred HhCC
Q 024032 261 CSKI 264 (273)
Q Consensus 261 ~~~~ 264 (273)
.++.
T Consensus 233 ~~g~ 236 (362)
T 2it1_A 233 FLGN 236 (362)
T ss_dssp HSBT
T ss_pred HcCC
Confidence 4554
No 17
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=3.9e-42 Score=301.76 Aligned_cols=172 Identities=13% Similarity=0.090 Sum_probs=144.5
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCC------
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNS------ 138 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~------ 138 (273)
+++++|++++| +++++ |+++||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++...
T Consensus 4 ~l~~~~l~~~y--~~~~~----l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 77 (224)
T 2pcj_A 4 ILRAENIKKVI--RGYEI----LKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELS 77 (224)
T ss_dssp EEEEEEEEEEE--TTEEE----EEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHH
T ss_pred EEEEEeEEEEE--CCEee----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHH
Confidence 68999999999 44667 999999999999999999999999999999999999 999999999998542
Q ss_pred ---CccEEEEeccchhhhccCCcccccccccC-------C----HHHHHHHHHHhc---------ccCCHHHHHHH---H
Q 024032 139 ---SHTITMYMEEHNVMRSLQSGFCVYDSRGF-------N----YNRVHEGLEELS---------SWMSEGVHHNQ---R 192 (273)
Q Consensus 139 ---~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~----~~~~~~~l~~~~---------~~LSgGqkq~~---r 192 (273)
++.++|++|++.+ +..+||+||..+ . .+++.++++.++ .+||||||||. |
T Consensus 78 ~~~~~~i~~v~q~~~l----~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lar 153 (224)
T 2pcj_A 78 LLRNRKLGFVFQFHYL----IPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIAR 153 (224)
T ss_dssp HHHHHHEEEECSSCCC----CTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHH
T ss_pred HHHhCcEEEEecCccc----CCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHH
Confidence 2569999999875 445699998321 1 234566777776 68999999987 3
Q ss_pred h-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeEeeecC
Q 024032 193 C-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKAGDSKPLDA 248 (273)
Q Consensus 193 ~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~ 248 (273)
+ +.+|++|||||||++||+. +.++++.++ |.|||++ .+||++++|++|++++.|+
T Consensus 154 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 154 ALANEPILLFADEPTGNLDSANTKRVMDIFLKINEG-GTSIVMVTHERELAELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp HTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred HHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEcCCHHHHHhCCEEEEEECCEEEEEee
Confidence 3 7899999999999999999 345666666 8999999 4689999999999998875
No 18
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=1.6e-42 Score=322.71 Aligned_cols=181 Identities=14% Similarity=0.253 Sum_probs=154.2
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC---CCcc
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---SSHT 141 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---~~~~ 141 (273)
+++++|++++|. ++ + |+++||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++.. .++.
T Consensus 1 ml~~~~l~~~y~--~~-~----l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ 73 (348)
T 3d31_A 1 MIEIESLSRKWK--NF-S----LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHD 73 (348)
T ss_dssp CEEEEEEEEECS--SC-E----EEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHT
T ss_pred CEEEEEEEEEEC--CE-E----EeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCc
Confidence 378999999993 44 7 999999999999999999999999999999999999 99999999999864 3467
Q ss_pred EEEEeccchhhhccCCcccccccccC--------CHHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCCEE
Q 024032 142 ITMYMEEHNVMRSLQSGFCVYDSRGF--------NYNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDDCA 200 (273)
Q Consensus 142 i~~v~q~~~~~~~~~~~~tv~en~~~--------~~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~iL 200 (273)
++|++|++.+|+ .+||+||..+ ..+++.++++.++ .+||||||||. |+ +.+|++|
T Consensus 74 ig~v~Q~~~l~~----~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lL 149 (348)
T 3d31_A 74 IAFVYQNYSLFP----HMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKIL 149 (348)
T ss_dssp CEEECTTCCCCT----TSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEE
T ss_pred EEEEecCcccCC----CCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 999999988644 4599998432 1256777888876 68999999987 44 7899999
Q ss_pred EEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChh
Q 024032 201 LMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPG 257 (273)
Q Consensus 201 lLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~ 257 (273)
||||||++||+. +.++++.++.|+|+|++ .+||+|++|++|++++.|++++++..+.
T Consensus 150 LLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p~ 220 (348)
T 3d31_A 150 LLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPV 220 (348)
T ss_dssp EEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCC
T ss_pred EEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCcc
Confidence 999999999999 34566665558999999 5689999999999999999999987654
No 19
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=2.9e-42 Score=323.51 Aligned_cols=189 Identities=18% Similarity=0.279 Sum_probs=153.1
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC---CCcc
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---SSHT 141 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---~~~~ 141 (273)
.++++|++++| +++++ |+++||+|++||+++|+||||||||||||+|+|+++ ++|+|.++|+++.. .++.
T Consensus 11 ~l~~~~l~~~y--~~~~v----l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ 84 (372)
T 1v43_A 11 EVKLENLTKRF--GNFTA----VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRN 84 (372)
T ss_dssp CEEEEEEEEEE--TTEEE----EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGT
T ss_pred eEEEEEEEEEE--CCEEE----EeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCc
Confidence 59999999999 45667 999999999999999999999999999999999999 99999999999864 3467
Q ss_pred EEEEeccchhhhccCCcccccccccC-------CH----HHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCC
Q 024032 142 ITMYMEEHNVMRSLQSGFCVYDSRGF-------NY----NRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSD 197 (273)
Q Consensus 142 i~~v~q~~~~~~~~~~~~tv~en~~~-------~~----~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p 197 (273)
++|++|++.+|+ .+||+||..+ .. +++.++++.++ .+||||||||. |+ +.+|
T Consensus 85 ig~v~Q~~~l~~----~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P 160 (372)
T 1v43_A 85 ISMVFQSYAVWP----HMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEP 160 (372)
T ss_dssp EEEEEC----------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCC
T ss_pred EEEEecCcccCC----CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 999999988654 4599998432 22 34667777776 68999999987 34 7999
Q ss_pred CEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChh---hHH
Q 024032 198 DCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPG---LRK 260 (273)
Q Consensus 198 ~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~---l~~ 260 (273)
++|||||||++||+. +.++++.++.|.|+|++ .+||+|++|++|++++.|++++++..+. ...
T Consensus 161 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~~a~ 240 (372)
T 1v43_A 161 DVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFVAT 240 (372)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSBHHHHH
T ss_pred CEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcccHHHHH
Confidence 999999999999999 34556655558999999 5689999999999999999999987653 333
Q ss_pred HhCC
Q 024032 261 CSKI 264 (273)
Q Consensus 261 ~~~~ 264 (273)
.++.
T Consensus 241 ~~g~ 244 (372)
T 1v43_A 241 FIGA 244 (372)
T ss_dssp HSSS
T ss_pred HhCC
Confidence 4454
No 20
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=7.2e-42 Score=304.37 Aligned_cols=179 Identities=16% Similarity=0.207 Sum_probs=149.1
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CC
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SS 139 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~ 139 (273)
.++++|++++|..+++.+ |+++||+|++||++||+||||||||||+|+|+|+++ ++|+|.++|+++.. .+
T Consensus 7 ~~~~~~l~~~y~~~~~~v----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~ 82 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVI----LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLR 82 (247)
T ss_dssp EEEEEEEEEESSTTSCEE----EEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHH
T ss_pred ceeEEEEEEEeCCCCcce----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHH
Confidence 689999999995334567 999999999999999999999999999999999999 99999999999864 34
Q ss_pred ccEEEEeccchhhhccCCcccccccccC-----CHHHHHHHHHHhc--------------------ccCCHHHHHHH---
Q 024032 140 HTITMYMEEHNVMRSLQSGFCVYDSRGF-----NYNRVHEGLEELS--------------------SWMSEGVHHNQ--- 191 (273)
Q Consensus 140 ~~i~~v~q~~~~~~~~~~~~tv~en~~~-----~~~~~~~~l~~~~--------------------~~LSgGqkq~~--- 191 (273)
+.++|++|++.++ ..||+||..+ ..+++.++++.++ .+||||||||.
T Consensus 83 ~~i~~v~Q~~~l~-----~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iA 157 (247)
T 2ff7_A 83 RQVGVVLQDNVLL-----NRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIA 157 (247)
T ss_dssp HHEEEECSSCCCT-----TSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHH
T ss_pred hcEEEEeCCCccc-----cccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHH
Confidence 5799999998743 3499998432 3455555555543 47999999987
Q ss_pred Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccC
Q 024032 192 RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSA 255 (273)
Q Consensus 192 r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~ 255 (273)
|+ +++|++|||||||++||+. +.++++. + |+|||++ ..||++++|++|++++.|++++++..
T Consensus 158 raL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~-g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 233 (247)
T 2ff7_A 158 RALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-K-GRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSE 233 (247)
T ss_dssp HHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-T-TSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTS
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-C-CCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 33 8999999999999999999 3355553 4 8999998 34899999999999999999999865
No 21
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=1.9e-42 Score=322.86 Aligned_cols=182 Identities=16% Similarity=0.229 Sum_probs=153.0
Q ss_pred ceEEEEEEEEeecCCee--eeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----
Q 024032 66 LNELRHKFLSYRSGDFW--IPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN----- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~--v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~----- 137 (273)
+++++|++++|. +++ + |+++||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++..
T Consensus 3 ~l~i~~l~~~y~--~~~~~v----l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~ 76 (353)
T 1oxx_K 3 RIIVKNVSKVFK--KGKVVA----LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76 (353)
T ss_dssp CEEEEEEEEEEG--GGTEEE----EEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEES
T ss_pred EEEEEeEEEEEC--CEeeee----EeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECccccccc
Confidence 589999999994 344 6 999999999999999999999999999999999999 99999999988632
Q ss_pred ---CCccEEEEeccchhhhccCCcccccccccC-------C----HHHHHHHHHHhc---------ccCCHHHHHHH---
Q 024032 138 ---SSHTITMYMEEHNVMRSLQSGFCVYDSRGF-------N----YNRVHEGLEELS---------SWMSEGVHHNQ--- 191 (273)
Q Consensus 138 ---~~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~----~~~~~~~l~~~~---------~~LSgGqkq~~--- 191 (273)
.++.++|++|++.+++ .+||+||..+ + .+++.++++.++ .+||||||||.
T Consensus 77 ~~~~~r~ig~v~Q~~~l~~----~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalA 152 (353)
T 1oxx_K 77 VPPEDRKIGMVFQTWALYP----NLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALA 152 (353)
T ss_dssp SCGGGSCEEEEETTSCCCT----TSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHH
T ss_pred CChhhCCEEEEeCCCccCC----CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHH
Confidence 3567999999988644 4599998322 2 235667777776 68999999987
Q ss_pred Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 192 RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 192 r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
|+ +.+|++|||||||++||+. +.++++.++.|+|+|+| .+||+|++|++|++++.|++++++..+
T Consensus 153 raL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p 232 (353)
T 1oxx_K 153 RALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNP 232 (353)
T ss_dssp HHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 34 7999999999999999999 34556655458999999 468999999999999999999998765
Q ss_pred h
Q 024032 257 G 257 (273)
Q Consensus 257 ~ 257 (273)
.
T Consensus 233 ~ 233 (353)
T 1oxx_K 233 V 233 (353)
T ss_dssp S
T ss_pred c
Confidence 3
No 22
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=4.5e-42 Score=322.38 Aligned_cols=182 Identities=17% Similarity=0.283 Sum_probs=153.5
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-------
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------- 137 (273)
.++++|++++| +++++ |+++||+|++||+++|+||||||||||||+|+|+++ ++|+|.++|+++..
T Consensus 3 ~l~~~~l~~~y--~~~~v----l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~ 76 (372)
T 1g29_1 3 GVRLVDVWKVF--GEVTA----VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFV 76 (372)
T ss_dssp EEEEEEEEEEE--TTEEE----EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEEC
T ss_pred EEEEEeEEEEE--CCEEE----EeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccC
Confidence 58999999999 45667 999999999999999999999999999999999999 99999999988643
Q ss_pred --CCccEEEEeccchhhhccCCccccccccc-------CCH----HHHHHHHHHhc---------ccCCHHHHHHH---H
Q 024032 138 --SSHTITMYMEEHNVMRSLQSGFCVYDSRG-------FNY----NRVHEGLEELS---------SWMSEGVHHNQ---R 192 (273)
Q Consensus 138 --~~~~i~~v~q~~~~~~~~~~~~tv~en~~-------~~~----~~~~~~l~~~~---------~~LSgGqkq~~---r 192 (273)
.++.++|++|++.+|+ .+||+||.. ... +++.++++.++ .+||||||||. |
T Consensus 77 ~~~~r~ig~v~Q~~~l~~----~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalAr 152 (372)
T 1g29_1 77 PPKDRDIAMVFQSYALYP----HMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGR 152 (372)
T ss_dssp CGGGSSEEEECSCCCCCT----TSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHH
T ss_pred CHhHCCEEEEeCCCccCC----CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHH
Confidence 3467999999988644 459999842 222 34667777776 68999999987 3
Q ss_pred h-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChh
Q 024032 193 C-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPG 257 (273)
Q Consensus 193 ~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~ 257 (273)
+ +.+|++|||||||++||+. +.++++.++.|.|+|+| .+||+|++|++|++++.|++++++..+.
T Consensus 153 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~ 232 (372)
T 1g29_1 153 AIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPA 232 (372)
T ss_dssp HHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCS
T ss_pred HHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHHhCcc
Confidence 3 7999999999999999999 33556655458999999 4689999999999999999999987653
No 23
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=6.1e-42 Score=337.75 Aligned_cols=224 Identities=16% Similarity=0.174 Sum_probs=179.4
Q ss_pred hhhhhhhccchhhhhhhhHHHHHHHhchhhhc--------cCCCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcE
Q 024032 29 FDECVKLKLDLPNVSTLTPRLRVLREMERLAL--------IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVIT 100 (273)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~--------~~~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~ 100 (273)
+..+...-..++++..+.+|+.++++.++... ....+.++++|++|+|+.++.++ |+|+||++++||+
T Consensus 294 l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~----l~~isl~i~~G~~ 369 (578)
T 4a82_A 294 LRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDNEAPI----LKDINLSIEKGET 369 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCCCTTCCCCCCCSCCEEEEEEEECSCSSSCCS----EEEEEEEECTTCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCccccCCCCCeEEEEEEEEEcCCCCCcc----eeeeEEEECCCCE
Confidence 34455556677889999999999988654311 11235699999999997655566 9999999999999
Q ss_pred EEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCccccccccc-----CCH
Q 024032 101 ILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSRG-----FNY 169 (273)
Q Consensus 101 ~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~~-----~~~ 169 (273)
+||+||||||||||+++|+|+++ ++|+|.++|+++.+ +++++++++|++.+ +..||+||.. ...
T Consensus 370 ~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l-----~~~tv~eni~~~~~~~~~ 444 (578)
T 4a82_A 370 VAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNIL-----FSDTVKENILLGRPTATD 444 (578)
T ss_dssp EEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCC-----CSSBHHHHHGGGCSSCCH
T ss_pred EEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCcc-----CcccHHHHHhcCCCCCCH
Confidence 99999999999999999999999 99999999999864 45789999999874 4459999942 345
Q ss_pred HHHHHHHHHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHH
Q 024032 170 NRVHEGLEELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVL 219 (273)
Q Consensus 170 ~~~~~~l~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~ 219 (273)
+++.++++.++ .+||||||||. |+ +++|++|||||||++||+. +.++++.
T Consensus 445 ~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~ 524 (578)
T 4a82_A 445 EEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS 524 (578)
T ss_dssp HHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc
Confidence 66666666553 47999999987 44 7899999999999999999 2234443
Q ss_pred hcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccCh-hhHHHhC
Q 024032 220 RRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSAP-GLRKCSK 263 (273)
Q Consensus 220 ~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~-~l~~~~~ 263 (273)
+ ++|+|+| ..||+|++|++|++++.|+++++++.+ .+.+.|.
T Consensus 525 ~--~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~el~~~~~~~~~~~~ 574 (578)
T 4a82_A 525 K--DRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHLYS 574 (578)
T ss_dssp T--TSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHTTSHHHHHHT
T ss_pred C--CCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHH
Confidence 3 7898888 458999999999999999999998654 3555553
No 24
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=7.3e-42 Score=337.84 Aligned_cols=221 Identities=14% Similarity=0.124 Sum_probs=176.1
Q ss_pred hhhhhccchhhhhhhhHHHHHHHhchhhh--------ccCCCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEE
Q 024032 31 ECVKLKLDLPNVSTLTPRLRVLREMERLA--------LIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITIL 102 (273)
Q Consensus 31 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~--------~~~~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~a 102 (273)
.+...-..++++..+.+|+.++++.++.. .....+.++++|++|+|+.+++++ |+|+||++++||++|
T Consensus 298 ~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~----l~~isl~i~~Ge~~~ 373 (587)
T 3qf4_A 298 MIGNILNFIVRASASAKRVLEVLNEKPAIEEADNALALPNVEGSVSFENVEFRYFENTDPV----LSGVNFSVKPGSLVA 373 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCSCCCCTTCBCCSCCCCCEEEEEEEECSSSSSCCS----EEEEEEEECTTCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCCccccCCCCCcEEEEEEEEEcCCCCCcc----eeceEEEEcCCCEEE
Confidence 34444456778899999999998765321 111245799999999997655666 999999999999999
Q ss_pred EEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCccccccccc-----CCHHH
Q 024032 103 LMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSRG-----FNYNR 171 (273)
Q Consensus 103 ivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~~-----~~~~~ 171 (273)
|+||||||||||+++|+|+++ ++|+|.++|+++.+ +++++++++|++.+ +..||+||.. .+.++
T Consensus 374 ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l-----f~~tv~eni~~~~~~~~~~~ 448 (587)
T 3qf4_A 374 VLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVL-----FSGTIKENLKWGREDATDDE 448 (587)
T ss_dssp EECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCC-----CSEEHHHHHTTTCSSCCHHH
T ss_pred EECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcC-----cCccHHHHHhccCCCCCHHH
Confidence 999999999999999999999 99999999999864 46789999999874 4559999943 34556
Q ss_pred HHHHHHHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhc
Q 024032 172 VHEGLEELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRR 221 (273)
Q Consensus 172 ~~~~l~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~ 221 (273)
+.++++.++ .+||||||||. |+ +++|++|||||||++||+. +.++++. +
T Consensus 449 ~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~ 527 (587)
T 3qf4_A 449 IVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-K 527 (587)
T ss_dssp HHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-T
T ss_pred HHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-C
Confidence 666555432 57999999987 44 8999999999999999999 2234443 3
Q ss_pred CCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccCh-hhHHHh
Q 024032 222 VDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSAP-GLRKCS 262 (273)
Q Consensus 222 ~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~-~l~~~~ 262 (273)
|+|+|+| ..||+|++|++|++++.|+++++++.. .+.+.|
T Consensus 528 -~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~ 575 (587)
T 3qf4_A 528 -GCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEHCKPYREIY 575 (587)
T ss_dssp -TCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHHHHHHHCHHHHHHH
T ss_pred -CCEEEEEecChHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHHHHH
Confidence 8999998 568999999999999999999998643 344433
No 25
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=4.2e-41 Score=300.47 Aligned_cols=186 Identities=16% Similarity=0.208 Sum_probs=154.0
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEEE
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~~ 144 (273)
+++++|++++|.. ++++ |+++||+|++||+++|+||||||||||+|+|+|+++ ++|+|. .++.++|
T Consensus 4 ~l~i~~l~~~y~~-~~~v----l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~--------~~~~i~~ 70 (253)
T 2nq2_C 4 ALSVENLGFYYQA-ENFL----FQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE--------VYQSIGF 70 (253)
T ss_dssp EEEEEEEEEEETT-TTEE----EEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE--------ECSCEEE
T ss_pred eEEEeeEEEEeCC-CCeE----EEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE--------EeccEEE
Confidence 5899999999941 4567 999999999999999999999999999999999999 999998 2467999
Q ss_pred EeccchhhhccCCcccccccccC------------C---HHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCC
Q 024032 145 YMEEHNVMRSLQSGFCVYDSRGF------------N---YNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRS 196 (273)
Q Consensus 145 v~q~~~~~~~~~~~~tv~en~~~------------~---~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~ 196 (273)
++|++.+ ++.+||+||..+ . .+++.++++.++ .+||||||||. |+ +.+
T Consensus 71 v~q~~~~----~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~ 146 (253)
T 2nq2_C 71 VPQFFSS----PFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASE 146 (253)
T ss_dssp ECSCCCC----SSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTT
T ss_pred EcCCCcc----CCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 9999875 345688887311 1 234667777776 68999999987 33 799
Q ss_pred CCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChhhHHHh
Q 024032 197 DDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPGLRKCS 262 (273)
Q Consensus 197 p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~l~~~~ 262 (273)
|++|||||||+|||+. +.++++.++.|.|||++ .+||++++|++|+ ++.|++++++..+.+.+.|
T Consensus 147 p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~~~~~~~~~~ 225 (253)
T 2nq2_C 147 CKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNILTSENLTALF 225 (253)
T ss_dssp CSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHCCHHHHHHHH
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHhCcHHHHHHh
Confidence 9999999999999999 34556655448999998 4689999999999 9999999998777788889
Q ss_pred CCceEEE
Q 024032 263 KISFCIL 269 (273)
Q Consensus 263 ~~~~~~~ 269 (273)
+.++.+.
T Consensus 226 ~~~~~~~ 232 (253)
T 2nq2_C 226 HLPMFEQ 232 (253)
T ss_dssp TSCEEEE
T ss_pred CCCceEE
Confidence 8876543
No 26
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=3.1e-41 Score=332.84 Aligned_cols=219 Identities=14% Similarity=0.210 Sum_probs=176.4
Q ss_pred hhhhhhhhccchhhhhhhhHHHHHHHhchhhhc------cCCCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEE
Q 024032 28 KFDECVKLKLDLPNVSTLTPRLRVLREMERLAL------IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITI 101 (273)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~------~~~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~ 101 (273)
.+..+...-..++++..+.+|+.++++.++... ....+.++++|++|+|+.+++++ |+|+||++++||++
T Consensus 297 pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~----l~~i~l~i~~G~~~ 372 (582)
T 3b5x_A 297 PLKALTSVTSEFQRGMAACQTLFGLMDLETERDNGKYEAERVNGEVDVKDVTFTYQGKEKPA----LSHVSFSIPQGKTV 372 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCCCCCCCCCCeEEEEEEEEEcCCCCccc----cccceEEECCCCEE
Confidence 344555666777889999999999987654211 11135799999999996433556 99999999999999
Q ss_pred EEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCccccccccc------CCH
Q 024032 102 LLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSRG------FNY 169 (273)
Q Consensus 102 aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~~------~~~ 169 (273)
||+||||||||||+|+|+|+++ ++|+|.++|+++.+ +++++++++|++.+| ..|++||.. .+.
T Consensus 373 ~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~-----~~tv~eni~~~~~~~~~~ 447 (582)
T 3b5x_A 373 ALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLF-----NDTIANNIAYAAEGEYTR 447 (582)
T ss_pred EEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccc-----cccHHHHHhccCCCCCCH
Confidence 9999999999999999999999 99999999998853 467899999998753 359999842 345
Q ss_pred HHHHHHHHHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHH
Q 024032 170 NRVHEGLEELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVL 219 (273)
Q Consensus 170 ~~~~~~l~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~ 219 (273)
++++++++.++ .+||||||||. |+ +++|++|||||||++||+. +.++++.
T Consensus 448 ~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~ 527 (582)
T 3b5x_A 448 EQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQ 527 (582)
T ss_pred HHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc
Confidence 66777776654 47999999987 44 8999999999999999999 2344443
Q ss_pred hcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccChh
Q 024032 220 RRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSAPG 257 (273)
Q Consensus 220 ~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~~ 257 (273)
+ |+|+|++ ..||+|++|++|++++.|+++++++.+.
T Consensus 528 -~-~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 570 (582)
T 3b5x_A 528 -K-NKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQDG 570 (582)
T ss_pred -C-CCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCc
Confidence 3 8899988 4589999999999999999999986543
No 27
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=1.4e-41 Score=301.43 Aligned_cols=187 Identities=15% Similarity=0.168 Sum_probs=153.1
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CC
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SS 139 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~ 139 (273)
+++++|++++|. +++++ |+++||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++.. .+
T Consensus 1 ml~~~~l~~~y~-~~~~v----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 75 (243)
T 1mv5_A 1 MLSARHVDFAYD-DSEQI----LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWR 75 (243)
T ss_dssp CEEEEEEEECSS-SSSCS----EEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCT
T ss_pred CEEEEEEEEEeC-CCCce----EEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHH
Confidence 378999999984 34556 999999999999999999999999999999999999 99999999998753 45
Q ss_pred ccEEEEeccchhhhccCCcccccccccC------CHHHHHHHHHHhc--------------------ccCCHHHHHHH--
Q 024032 140 HTITMYMEEHNVMRSLQSGFCVYDSRGF------NYNRVHEGLEELS--------------------SWMSEGVHHNQ-- 191 (273)
Q Consensus 140 ~~i~~v~q~~~~~~~~~~~~tv~en~~~------~~~~~~~~l~~~~--------------------~~LSgGqkq~~-- 191 (273)
+.+++++|++.+ +..||+||..+ ..+++.++++.++ .+||||||||.
T Consensus 76 ~~i~~v~q~~~l-----~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~l 150 (243)
T 1mv5_A 76 SQIGFVSQDSAI-----MAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAI 150 (243)
T ss_dssp TTCCEECCSSCC-----CCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHH
T ss_pred hhEEEEcCCCcc-----ccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHH
Confidence 679999999864 33599998432 3456677777654 37999999987
Q ss_pred -Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 192 -RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 192 -r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
|+ +++|++|||||||++||+. +.++++. + |+|||++ ..||++++|++|++++.|++++++...
T Consensus 151 Aral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~-~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 228 (243)
T 1mv5_A 151 ARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-K-GRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATH 228 (243)
T ss_dssp HHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-T-TSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHC
T ss_pred HHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhcc
Confidence 33 7899999999999999999 4456665 4 8999999 348999999999999999999987543
Q ss_pred -hhHHHhCC
Q 024032 257 -GLRKCSKI 264 (273)
Q Consensus 257 -~l~~~~~~ 264 (273)
.+...|+.
T Consensus 229 ~~~~~~~~~ 237 (243)
T 1mv5_A 229 PLYAKYVSE 237 (243)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHh
Confidence 34555543
No 28
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=9.9e-42 Score=302.41 Aligned_cols=178 Identities=19% Similarity=0.234 Sum_probs=147.9
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC---CCcc
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---SSHT 141 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---~~~~ 141 (273)
+++++|++++|. + + |+++||+|++ |++||+||||||||||+|+|+|+++ ++|+|.++|+++.. .++.
T Consensus 1 ml~~~~l~~~y~--~--~----l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 71 (240)
T 2onk_A 1 MFLKVRAEKRLG--N--F----RLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRG 71 (240)
T ss_dssp CCEEEEEEEEET--T--E----EEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSC
T ss_pred CEEEEEEEEEeC--C--E----EeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCc
Confidence 378999999993 2 4 9999999999 9999999999999999999999999 99999999998753 4567
Q ss_pred EEEEeccchhhhccCCcccccccccC---------CHHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCCE
Q 024032 142 ITMYMEEHNVMRSLQSGFCVYDSRGF---------NYNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDDC 199 (273)
Q Consensus 142 i~~v~q~~~~~~~~~~~~tv~en~~~---------~~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~i 199 (273)
++|++|++.+ +..+||+||..+ ..+++.++++.++ .+||||||||. |+ +.+|++
T Consensus 72 i~~v~q~~~l----~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~l 147 (240)
T 2onk_A 72 IGFVPQDYAL----FPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRL 147 (240)
T ss_dssp CBCCCSSCCC----CTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSS
T ss_pred EEEEcCCCcc----CCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 9999999875 445599998422 1234666777766 68999999987 33 899999
Q ss_pred EEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 200 ALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 200 LlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
|||||||+|||+. +.++++.++.|+|||++ .+||++++|++|++++.|+++++++.+
T Consensus 148 llLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 218 (240)
T 2onk_A 148 LLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAK 218 (240)
T ss_dssp BEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 9999999999999 34556654348899998 468999999999999999999987554
No 29
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=4.7e-41 Score=302.07 Aligned_cols=182 Identities=15% Similarity=0.144 Sum_probs=150.0
Q ss_pred ceEEEEEEEEeecCC---eeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC--CC
Q 024032 66 LNELRHKFLSYRSGD---FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN--SS 139 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~---~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~--~~ 139 (273)
+++++|++++|..++ +++ |+++||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++.. .+
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~v----l~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~ 77 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKA----LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIR 77 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEE----EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHG
T ss_pred EEEEEEEEEEecCCCccccce----eeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhh
Confidence 488999999995223 567 999999999999999999999999999999999999 99999999998753 45
Q ss_pred ccEEEEeccchhhhccCCcccccccccC----------CHHHHHHHHHHhc-----------ccCCHHHHHHH---Hh-c
Q 024032 140 HTITMYMEEHNVMRSLQSGFCVYDSRGF----------NYNRVHEGLEELS-----------SWMSEGVHHNQ---RC-L 194 (273)
Q Consensus 140 ~~i~~v~q~~~~~~~~~~~~tv~en~~~----------~~~~~~~~l~~~~-----------~~LSgGqkq~~---r~-l 194 (273)
+.++|++|++.. .++.+||+||..+ ..+++.++++.++ .+||||||||. |+ +
T Consensus 78 ~~i~~v~q~~~~---~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~ 154 (266)
T 2yz2_A 78 RNIGIAFQYPED---QFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIV 154 (266)
T ss_dssp GGEEEECSSGGG---GCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHT
T ss_pred hhEEEEeccchh---hcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHH
Confidence 679999998632 1455688887321 1345666777654 46999999987 33 8
Q ss_pred CCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccC
Q 024032 195 RSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSA 255 (273)
Q Consensus 195 ~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~ 255 (273)
.+|++|||||||+|||+. +.++++.++ |.|||++ .+||++++|++|+++..|++++++..
T Consensus 155 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 228 (266)
T 2yz2_A 155 HEPDILILDEPLVGLDREGKTDLLRIVEKWKTL-GKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228 (266)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred cCCCEEEEcCccccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999 345666655 8999998 46899999999999999999988754
No 30
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=3.3e-41 Score=332.73 Aligned_cols=217 Identities=15% Similarity=0.191 Sum_probs=175.5
Q ss_pred hhhhhhhhccchhhhhhhhHHHHHHHhchhhhc------cCCCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEE
Q 024032 28 KFDECVKLKLDLPNVSTLTPRLRVLREMERLAL------IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITI 101 (273)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~------~~~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~ 101 (273)
.+..+...-..++++..+.+|+.++++.++... ....+.++++|++|+|+.+++++ |+|+||++++||++
T Consensus 297 pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~----l~~v~~~i~~G~~~ 372 (582)
T 3b60_A 297 PLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDEGKRVIDRATGDLEFRNVTFTYPGREVPA----LRNINLKIPAGKTV 372 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCCCCCBCCSCCCCCEEEEEEEECSSSSSCCS----EEEEEEEECTTCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCcEEEEEEEEEcCCCCCcc----ccceeEEEcCCCEE
Confidence 344555666777889999999999988654311 11235799999999996433556 99999999999999
Q ss_pred EEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCccccccccc------CCH
Q 024032 102 LLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSRG------FNY 169 (273)
Q Consensus 102 aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~~------~~~ 169 (273)
||+||||||||||+++|+|+++ ++|+|.++|+++.+ +++++++++|++.+ +..||+||.. .+.
T Consensus 373 ~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l-----~~~tv~eni~~~~~~~~~~ 447 (582)
T 3b60_A 373 ALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHL-----FNDTVANNIAYARTEEYSR 447 (582)
T ss_dssp EEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCC-----CSSBHHHHHHTTTTSCCCH
T ss_pred EEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcC-----CCCCHHHHHhccCCCCCCH
Confidence 9999999999999999999999 99999999999864 45679999999874 3459999832 345
Q ss_pred HHHHHHHHHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHH
Q 024032 170 NRVHEGLEELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVL 219 (273)
Q Consensus 170 ~~~~~~l~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~ 219 (273)
++++++++.++ .+||||||||. |+ +++|++|||||||++||+. +.++++.
T Consensus 448 ~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~ 527 (582)
T 3b60_A 448 EQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ 527 (582)
T ss_dssp HHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh
Confidence 66777766553 47999999987 44 7999999999999999999 3345554
Q ss_pred hcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccC
Q 024032 220 RRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSA 255 (273)
Q Consensus 220 ~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~ 255 (273)
+ |+|+|++ ..||+|++|++|++++.|+++++++.
T Consensus 528 ~--~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 568 (582)
T 3b60_A 528 K--NRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ 568 (582)
T ss_dssp T--TSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHH
T ss_pred C--CCEEEEEeccHHHHHhCCEEEEEECCEEEEecCHHHHHHc
Confidence 3 8899888 45899999999999999999999754
No 31
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=9.4e-42 Score=362.88 Aligned_cols=217 Identities=15% Similarity=0.162 Sum_probs=177.6
Q ss_pred hhhhccchhhhhhhhHHHHHHHhchhhh--------ccCCCCceEEEEEEEEeecC-CeeeeccceeeeeeEEcCCcEEE
Q 024032 32 CVKLKLDLPNVSTLTPRLRVLREMERLA--------LIAPDGLNELRHKFLSYRSG-DFWIPIGGIQKGGMDIPPVITIL 102 (273)
Q Consensus 32 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~--------~~~~~~~i~~~~v~~~y~~g-~~~v~~~~L~~is~~i~~Ge~~a 102 (273)
+......+..+..+.+|+.++++.++.. ..+..+.|+++||+|+|+.+ +.+| |+|+||+|++||.+|
T Consensus 1034 ~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~V----L~~isl~I~~Ge~va 1109 (1321)
T 4f4c_A 1034 ATSYFPEYAKATFAGGIIFGMLRKISKIDSLSLAGEKKKLYGKVIFKNVRFAYPERPEIEI----LKGLSFSVEPGQTLA 1109 (1321)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHCCCSSCTTCCCSBCCCCCCCEEEEEEEECCTTSCSSCS----EEEEEEEECTTCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCcccCCCccCCCCCCCCCCeEEEEEEEEeCCCCCCCcc----ccceeEEECCCCEEE
Confidence 3334455677888899999998755321 11224579999999999753 3456 999999999999999
Q ss_pred EEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCcccccccc-------cCCH
Q 024032 103 LMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSR-------GFNY 169 (273)
Q Consensus 103 ivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~-------~~~~ 169 (273)
||||||||||||+++|.|+++ ++|+|.+||.|+++ +|+++++|+|++.+ |..|++||. ..++
T Consensus 1110 IVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~L-----F~gTIreNI~~gld~~~~sd 1184 (1321)
T 4f4c_A 1110 LVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTL-----FDCSIAENIIYGLDPSSVTM 1184 (1321)
T ss_dssp EECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCC-----CSEEHHHHHSSSSCTTTSCH
T ss_pred EECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEe-----eCccHHHHHhccCCCCCCCH
Confidence 999999999999999999999 99999999999975 67899999999984 566999993 2467
Q ss_pred HHHHHHHHHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH--HHHHH-HHh-c
Q 024032 170 NRVHEGLEELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK--SSPKY-VLR-R 221 (273)
Q Consensus 170 ~~~~~~l~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~--~~l~~-l~~-~ 221 (273)
+++.++++.++ .+||||||||. |+ +++|+|||||||||+||+. ..+.+ +.+ .
T Consensus 1185 ~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~ 1264 (1321)
T 4f4c_A 1185 AQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR 1264 (1321)
T ss_dssp HHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc
Confidence 88888888776 57999999986 55 8999999999999999999 33333 322 1
Q ss_pred CCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccChh
Q 024032 222 VDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSAPG 257 (273)
Q Consensus 222 ~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~~ 257 (273)
.|+|+|+| ..||+|+||++|+|++.|+|++|++++.
T Consensus 1265 ~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE~Gth~eLl~~~g 1307 (1321)
T 4f4c_A 1265 EGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSEKG 1307 (1321)
T ss_dssp SSSEEEEECSSSSTTTTCSEEEEESSSSEEEEECHHHHHHCC-
T ss_pred CCCEEEEeccCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCc
Confidence 28899998 4589999999999999999999997653
No 32
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.5e-41 Score=320.47 Aligned_cols=185 Identities=15% Similarity=0.211 Sum_probs=153.9
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeCCC-----C
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGN-----S 138 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i~~-----~ 138 (273)
...++++|++++|..++..+ |+++||+|++||+++|+||||||||||+|+|+|+++++|+|.++|+++.. .
T Consensus 17 ~~~i~~~~l~~~y~~~~~~~----L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~~~G~I~i~G~~i~~~~~~~~ 92 (390)
T 3gd7_A 17 GGQMTVKDLTAKYTEGGNAI----LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLEQW 92 (390)
T ss_dssp SCCEEEEEEEEESSSSSCCS----EEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSEEEEEEEESSCBTTSSCHHHH
T ss_pred CCeEEEEEEEEEecCCCeEE----eeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCeEEEECCEECCcCChHHH
Confidence 45799999999997555666 99999999999999999999999999999999998888999999999864 3
Q ss_pred CccEEEEeccchhhhccCCccccccccc----CCHHHHHHHHHHhc---------cc-----------CCHHHHHHH---
Q 024032 139 SHTITMYMEEHNVMRSLQSGFCVYDSRG----FNYNRVHEGLEELS---------SW-----------MSEGVHHNQ--- 191 (273)
Q Consensus 139 ~~~i~~v~q~~~~~~~~~~~~tv~en~~----~~~~~~~~~l~~~~---------~~-----------LSgGqkq~~--- 191 (273)
++.+++++|++.+| .+||++|.. ...+++.++++.++ .+ ||||||||.
T Consensus 93 rr~ig~v~Q~~~lf-----~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalA 167 (390)
T 3gd7_A 93 RKAFGVIPQKVFIF-----SGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLA 167 (390)
T ss_dssp HHTEEEESCCCCCC-----SEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHH
T ss_pred hCCEEEEcCCcccC-----ccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHH
Confidence 47899999998753 459999853 34667778888776 34 999999987
Q ss_pred Hh-cCCCCEEEEcCcCCCCCHH--HHH-HHHHh-cCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccChh
Q 024032 192 RC-LRSDDCALMKNDAEIDDLK--SSP-KYVLR-RVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSAPG 257 (273)
Q Consensus 192 r~-l~~p~iLlLDEPts~LD~~--~~l-~~l~~-~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~~ 257 (273)
|+ +.+|++|||||||++||+. ..+ ..+.+ ..+.|+|++ ..||||++|++|+|++.|++++++..|.
T Consensus 168 RAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~~p~ 245 (390)
T 3gd7_A 168 RSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPA 245 (390)
T ss_dssp HHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHHCCS
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCC
Confidence 44 7999999999999999999 222 22222 127888888 4589999999999999999999987653
No 33
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=4.5e-41 Score=303.09 Aligned_cols=183 Identities=16% Similarity=0.202 Sum_probs=146.0
Q ss_pred CCceEEEEEEEEeecC-CeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC----
Q 024032 64 DGLNELRHKFLSYRSG-DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---- 137 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g-~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---- 137 (273)
...++++|++++|..+ ++++ |+++||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++..
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~v----l~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~ 89 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQV----LQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHH 89 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCC----EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHH
T ss_pred CceEEEEEEEEEeCCCCCcee----eEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHH
Confidence 3579999999999531 2456 999999999999999999999999999999999999 99999999998853
Q ss_pred -CCccEEEEeccchhhhccCCcccccccccC-----CH-HHH---------HHHHHHh--c---------ccCCHHHHHH
Q 024032 138 -SSHTITMYMEEHNVMRSLQSGFCVYDSRGF-----NY-NRV---------HEGLEEL--S---------SWMSEGVHHN 190 (273)
Q Consensus 138 -~~~~i~~v~q~~~~~~~~~~~~tv~en~~~-----~~-~~~---------~~~l~~~--~---------~~LSgGqkq~ 190 (273)
.++.++|++|++.++ ..||+||..+ .. +.+ .+.++.+ + .+||||||||
T Consensus 90 ~~~~~i~~v~Q~~~l~-----~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QR 164 (271)
T 2ixe_A 90 YLHTQVAAVGQEPLLF-----GRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQA 164 (271)
T ss_dssp HHHHHEEEECSSCCCC-----SSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHH
T ss_pred HHhccEEEEecCCccc-----cccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHH
Confidence 345799999998642 3499998422 11 222 2334444 1 6799999998
Q ss_pred H---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhc
Q 024032 191 Q---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLF 253 (273)
Q Consensus 191 ~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~ 253 (273)
. |+ +.+|++|||||||++||+. +.++++.++.|+|||++ ..||++++|++|++++.|++++++
T Consensus 165 v~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~ 244 (271)
T 2ixe_A 165 VALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLM 244 (271)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 7 34 8999999999999999999 22344433348899998 348999999999999999999987
Q ss_pred cC
Q 024032 254 SA 255 (273)
Q Consensus 254 ~~ 255 (273)
..
T Consensus 245 ~~ 246 (271)
T 2ixe_A 245 ER 246 (271)
T ss_dssp HH
T ss_pred hC
Confidence 54
No 34
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.6e-41 Score=336.07 Aligned_cols=217 Identities=15% Similarity=0.193 Sum_probs=174.3
Q ss_pred hhhhhhhhccchhhhhhhhHHHHHHHhchhhhc-------cCCCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcE
Q 024032 28 KFDECVKLKLDLPNVSTLTPRLRVLREMERLAL-------IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVIT 100 (273)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-------~~~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~ 100 (273)
.+..+...-..++.+..+.+|+.++++.++... ....+.++++|++|+|+. ++++ |+|+||++++||+
T Consensus 309 ~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~-~~~~----l~~isl~i~~G~~ 383 (598)
T 3qf4_B 309 PLNELSNQFNMIQMALASAERIFEILDLEEEKDDPDAVELREVRGEIEFKNVWFSYDK-KKPV----LKDITFHIKPGQK 383 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCSSCCCCCSCCCCEEEEEEECCSSS-SSCS----CCSEEEECCTTCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCeEEEEEEEEECCC-CCcc----ccceEEEEcCCCE
Confidence 344556666777889999999999988654311 112356999999999953 3456 9999999999999
Q ss_pred EEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCccccccccc-----CCH
Q 024032 101 ILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSRG-----FNY 169 (273)
Q Consensus 101 ~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~~-----~~~ 169 (273)
+||+||||||||||+|+|+|+++ ++|+|.++|+++.+ +++++++++|++.+ +..||+||.. .+.
T Consensus 384 ~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~l-----f~~tv~eni~~~~~~~~~ 458 (598)
T 3qf4_B 384 VALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTIL-----FSTTVKENLKYGNPGATD 458 (598)
T ss_dssp EEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCC-----CSSBHHHHHHSSSTTCCT
T ss_pred EEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCcc-----ccccHHHHHhcCCCCCCH
Confidence 99999999999999999999999 99999999999864 46789999999874 4569999842 334
Q ss_pred HHHHHHHHHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHH
Q 024032 170 NRVHEGLEELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVL 219 (273)
Q Consensus 170 ~~~~~~l~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~ 219 (273)
+++.++++.++ .+||||||||. |+ +++|++|||||||++||+. +.++++.
T Consensus 459 ~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~ 538 (598)
T 3qf4_B 459 EEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM 538 (598)
T ss_dssp THHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc
Confidence 45555544332 47999999987 44 8999999999999999998 3345554
Q ss_pred hcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 220 RRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 220 ~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
+ |+|+|+| ..||+|++|++|++++.|+++++++..
T Consensus 539 ~--~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 580 (598)
T 3qf4_B 539 E--GKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQKR 580 (598)
T ss_dssp T--TSEEEEESCCTTHHHHCSEEEEECSSSEEECSCHHHHHHTT
T ss_pred C--CCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCC
Confidence 3 8999998 448999999999999999999998653
No 35
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=6.5e-41 Score=298.70 Aligned_cols=187 Identities=16% Similarity=0.135 Sum_probs=155.8
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CC
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SS 139 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~ 139 (273)
+++++|++++ ++ |+++||+|++||+++|+||||||||||+|+|+|+++ + |+|.++|+++.. .+
T Consensus 4 ~l~~~~l~~~------~v----l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~ 72 (249)
T 2qi9_C 4 VMQLQDVAES------TR----LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLA 72 (249)
T ss_dssp EEEEEEEEET------TT----EEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHH
T ss_pred EEEEEceEEE------EE----EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHh
Confidence 5889999885 35 999999999999999999999999999999999999 9 999999998753 34
Q ss_pred ccEEEEeccchhhhccCCcccccccccC------CHHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCC--
Q 024032 140 HTITMYMEEHNVMRSLQSGFCVYDSRGF------NYNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDD-- 198 (273)
Q Consensus 140 ~~i~~v~q~~~~~~~~~~~~tv~en~~~------~~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~-- 198 (273)
+.++|++|++.+ ++.+||+||..+ ..+++.++++.++ .+||||||||. |+ +.+|+
T Consensus 73 ~~i~~v~q~~~~----~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~ 148 (249)
T 2qi9_C 73 LHRAYLSQQQTP----PFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQA 148 (249)
T ss_dssp HHEEEECSCCCC----CTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTT
T ss_pred ceEEEECCCCcc----CCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcC
Confidence 679999999875 445699998432 2566778888876 67999999987 33 78999
Q ss_pred -----EEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhcc-Chhh
Q 024032 199 -----CALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFS-APGL 258 (273)
Q Consensus 199 -----iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~-~~~l 258 (273)
+|||||||+|||+. +.++++.++ |+|||++ .+||++++|++|++++.|+++++++ ...
T Consensus 149 ~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~- 226 (249)
T 2qi9_C 149 NPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQ-GLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPNL- 226 (249)
T ss_dssp CTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSCHHHH-
T ss_pred CCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcChhH-
Confidence 99999999999999 345666655 8999999 4689999999999999999999986 344
Q ss_pred HHHhCCceEEE
Q 024032 259 RKCSKISFCIL 269 (273)
Q Consensus 259 ~~~~~~~~~~~ 269 (273)
.+.|+.+..+.
T Consensus 227 ~~~~~~~~~~~ 237 (249)
T 2qi9_C 227 AQAYGMNFRRL 237 (249)
T ss_dssp HHHHSSCEEEE
T ss_pred HHHhCCceeEe
Confidence 77788765543
No 36
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=1.5e-40 Score=328.76 Aligned_cols=216 Identities=18% Similarity=0.186 Sum_probs=171.7
Q ss_pred hhhhhhhccchhhhhhhhHHHHHHHhchhhh------c--cCCCCc-eEEEEEEEEeecC-CeeeeccceeeeeeEEcCC
Q 024032 29 FDECVKLKLDLPNVSTLTPRLRVLREMERLA------L--IAPDGL-NELRHKFLSYRSG-DFWIPIGGIQKGGMDIPPV 98 (273)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~------~--~~~~~~-i~~~~v~~~y~~g-~~~v~~~~L~~is~~i~~G 98 (273)
+..+...-..++++..+.+|+.++++.++.. . ....+. ++++|++|+|+.+ +.++ |+|+||++++|
T Consensus 295 l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~v----l~~isl~i~~G 370 (595)
T 2yl4_A 295 IGGLSSFYSELMKGLGAGGRLWELLEREPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPI----FQDFSLSIPSG 370 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCSSCSBCCCTTTCCCCEEEEEEEEECSSCTTSEE----EEEEEEEECTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCCCCCCcCCCCCeEEEEEEEEEeCCCCCCcc----ccceEEEEcCC
Confidence 3445555566778889999999998764321 0 111345 9999999999643 2457 99999999999
Q ss_pred cEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCccccccccc------
Q 024032 99 ITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSRG------ 166 (273)
Q Consensus 99 e~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~~------ 166 (273)
|++||+||||||||||+++|+|+++ ++|+|.++|+++.+ +++++++++|++.+ +..||+||..
T Consensus 371 ~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l-----~~~tv~eni~~~~~~~ 445 (595)
T 2yl4_A 371 SVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPIL-----FSCSIAENIAYGADDP 445 (595)
T ss_dssp CEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEECSSCCC-----CSSBHHHHHHTTSSST
T ss_pred CEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEEEccCCcc-----cCCCHHHHHhhcCCCc
Confidence 9999999999999999999999999 99999999999864 45679999999874 3459999831
Q ss_pred --CCHHHHHHHHHHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HH
Q 024032 167 --FNYNRVHEGLEELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SS 214 (273)
Q Consensus 167 --~~~~~~~~~l~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~ 214 (273)
.+.++++++++.++ .+||||||||. |+ +++|++|||||||++||+. +.
T Consensus 446 ~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~ 525 (595)
T 2yl4_A 446 SSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEA 525 (595)
T ss_dssp TTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHH
Confidence 35667777777654 57999999987 44 7999999999999999999 23
Q ss_pred HHHHHhcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccC
Q 024032 215 PKYVLRRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSA 255 (273)
Q Consensus 215 l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~ 255 (273)
++++.+ |+|+|++ ..||+|++|++|++++.|++++++++
T Consensus 526 l~~~~~--~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 571 (595)
T 2yl4_A 526 LDRLMD--GRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEELLSK 571 (595)
T ss_dssp HHHHHT--TSEEEEECCCHHHHHHSSEEEEEETTEEEEEECSCC----
T ss_pred HHHHhc--CCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhC
Confidence 444544 7899888 44899999999999999999999863
No 37
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=2e-40 Score=352.74 Aligned_cols=216 Identities=13% Similarity=0.168 Sum_probs=180.3
Q ss_pred hhhhhhccchhhhhhhhHHHHHHHhchhhh---------ccCCCCceEEEEEEEEeecC-CeeeeccceeeeeeEEcCCc
Q 024032 30 DECVKLKLDLPNVSTLTPRLRVLREMERLA---------LIAPDGLNELRHKFLSYRSG-DFWIPIGGIQKGGMDIPPVI 99 (273)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~---------~~~~~~~i~~~~v~~~y~~g-~~~v~~~~L~~is~~i~~Ge 99 (273)
..+......++++.++.+|+.++++.++.. .....+.|+++||+|+|+.. +.++ |+|+||+|++|+
T Consensus 370 ~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~v----L~~isl~i~~G~ 445 (1321)
T 4f4c_A 370 GLAGPQLAVLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPI----LRGMNLRVNAGQ 445 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTSCCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCS----EEEEEEEECTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccccccCCCCCCcEEEEEeeeeCCCCCCCce----eeceEEeecCCc
Confidence 344455566788999999999998765421 11123579999999999753 4566 999999999999
Q ss_pred EEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCcccccccc-----cCC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSR-----GFN 168 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~-----~~~ 168 (273)
.+|||||||||||||+++|.|+++ ++|+|.++|.++++ +|+++++|+|++. +|+.||+||. ..+
T Consensus 446 ~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~-----Lf~~TI~eNI~~g~~~~~ 520 (1321)
T 4f4c_A 446 TVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPA-----LFNCTIEENISLGKEGIT 520 (1321)
T ss_dssp EEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCC-----CCSEEHHHHHHTTCTTCC
T ss_pred EEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcce-----eeCCchhHHHhhhcccch
Confidence 999999999999999999999999 99999999999975 5678999999998 4566999993 346
Q ss_pred HHHHHHHHHHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHH
Q 024032 169 YNRVHEGLEELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYV 218 (273)
Q Consensus 169 ~~~~~~~l~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l 218 (273)
++++.++++.++ ..||||||||. |+ +++|+|||||||||+||+. +.+.++
T Consensus 521 ~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~ 600 (1321)
T 4f4c_A 521 REEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKA 600 (1321)
T ss_dssp HHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHH
Confidence 788888887764 57999999987 55 8999999999999999998 334555
Q ss_pred HhcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 219 LRRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 219 ~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
.+ |+|+|+| ..||+|+||++|+|++.|+|+|+++..
T Consensus 601 ~~--~~T~iiiaHrls~i~~aD~Iivl~~G~ive~Gth~eL~~~~ 643 (1321)
T 4f4c_A 601 AK--GRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMAQQ 643 (1321)
T ss_dssp HT--TSEEEEECSCTTTTTTCSEEEEEETTEEEEEECHHHHHTTT
T ss_pred hC--CCEEEEEcccHHHHHhCCEEEEeeCCeeeccCCHHHHHHhh
Confidence 54 8898888 568999999999999999999998654
No 38
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=2.2e-40 Score=296.79 Aligned_cols=180 Identities=17% Similarity=0.208 Sum_probs=146.4
Q ss_pred CceEEEEEEEEeecCC-eeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeCCC-----C
Q 024032 65 GLNELRHKFLSYRSGD-FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGN-----S 138 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~-~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i~~-----~ 138 (273)
..++++|++++|.... +++ |+++||+|++|++++|+||||||||||+|+|+|+++.+|+|.++|+++.. .
T Consensus 16 ~~l~i~~l~~~y~~~~~~~v----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i~g~~i~~~~~~~~ 91 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRT----LKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNRNSI 91 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCS----EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGBCHHHH
T ss_pred CeEEEEEEEEEeCCCCcCce----eEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCeEEEECCEEhhhcCHHHH
Confidence 4699999999995321 345 99999999999999999999999999999999998878999999998853 3
Q ss_pred CccEEEEeccchhhhccCCcccccccccC-----CHHHHHHHHHHhc--------------------ccCCHHHHHHH--
Q 024032 139 SHTITMYMEEHNVMRSLQSGFCVYDSRGF-----NYNRVHEGLEELS--------------------SWMSEGVHHNQ-- 191 (273)
Q Consensus 139 ~~~i~~v~q~~~~~~~~~~~~tv~en~~~-----~~~~~~~~l~~~~--------------------~~LSgGqkq~~-- 191 (273)
++.++|++|++.+ +..||+||..+ ..+++.++++.++ .+||||||||.
T Consensus 92 ~~~i~~v~Q~~~l-----~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~l 166 (260)
T 2ghi_A 92 RSIIGIVPQDTIL-----FNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAI 166 (260)
T ss_dssp HTTEEEECSSCCC-----CSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHH
T ss_pred hccEEEEcCCCcc-----cccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHH
Confidence 5679999999874 34599998422 3445555554432 47999999987
Q ss_pred -Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccC
Q 024032 192 -RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSA 255 (273)
Q Consensus 192 -r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~ 255 (273)
|+ +++|++|||||||++||+. +.++++. + ++|||++ ..||++++|++|++++.|++++++..
T Consensus 167 AraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~-~-~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 243 (260)
T 2ghi_A 167 ARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLR-K-NRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKL 243 (260)
T ss_dssp HHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHT-T-TSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHHH
T ss_pred HHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhc-C-CCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 33 7899999999999999999 3345553 3 7899988 34899999999999999999998753
No 39
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=3.3e-40 Score=296.76 Aligned_cols=179 Identities=15% Similarity=0.139 Sum_probs=141.5
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhC--cc-CccEEEECCeeCCCC--
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSV--LS-RSGLVLFAQTSSGNS-- 138 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl--~~-~~G~I~i~g~~i~~~-- 138 (273)
..+++++|++++| +++++ |+++||+|++||+++|+||||||||||+|+|+|+ ++ ++|+|.++|+++...
T Consensus 18 ~~~l~~~~l~~~y--~~~~v----l~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~ 91 (267)
T 2zu0_C 18 SHMLSIKDLHVSV--EDKAI----LRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSP 91 (267)
T ss_dssp --CEEEEEEEEEE--TTEEE----EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCH
T ss_pred CceEEEEeEEEEE--CCEEE----EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCH
Confidence 3479999999999 45667 9999999999999999999999999999999999 45 899999999987532
Q ss_pred ----CccEEEEeccchhhhccCCccccccccc--------------CC----HHHHHHHHHHhc----------c-cCCH
Q 024032 139 ----SHTITMYMEEHNVMRSLQSGFCVYDSRG--------------FN----YNRVHEGLEELS----------S-WMSE 185 (273)
Q Consensus 139 ----~~~i~~v~q~~~~~~~~~~~~tv~en~~--------------~~----~~~~~~~l~~~~----------~-~LSg 185 (273)
++.+++++|++.++ ..+|+.+|.. .+ .+++.++++.++ . +|||
T Consensus 92 ~~~~~~~i~~v~Q~~~l~----~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSg 167 (267)
T 2zu0_C 92 EDRAGEGIFMAFQYPVEI----PGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSG 167 (267)
T ss_dssp HHHHHHTEEEECSSCCCC----TTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCH
T ss_pred HHHhhCCEEEEccCcccc----ccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCH
Confidence 23489999998754 3346666521 11 124556666665 2 4999
Q ss_pred HHHHHH---Hh-cCCCCEEEEcCcCCCCCHHH------HHHHHHhcCCcEEEEc--------ee-CCEEEEEeCCeEeee
Q 024032 186 GVHHNQ---RC-LRSDDCALMKNDAEIDDLKS------SPKYVLRRVDFAMVVS--------NI-AEIYKALKAGDSKPL 246 (273)
Q Consensus 186 Gqkq~~---r~-l~~p~iLlLDEPts~LD~~~------~l~~l~~~~g~tiiiv--------~~-ad~i~vl~~G~i~~~ 246 (273)
|||||. |+ +.+|++|||||||+|||+.. .++++.++ |+|||++ .+ ||++++|++|++++.
T Consensus 168 Gq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~-g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~ 246 (267)
T 2zu0_C 168 GEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDG-KRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKS 246 (267)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCS-SCEEEEECSSGGGGGTSCCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEE
Confidence 999987 33 78999999999999999992 23334333 8999998 33 899999999999999
Q ss_pred cChhhhc
Q 024032 247 DATKRLF 253 (273)
Q Consensus 247 g~~~~l~ 253 (273)
|+++++.
T Consensus 247 g~~~~~~ 253 (267)
T 2zu0_C 247 GDFTLVK 253 (267)
T ss_dssp ECTTHHH
T ss_pred cCHHHHh
Confidence 9988764
No 40
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=4e-40 Score=293.39 Aligned_cols=174 Identities=16% Similarity=0.199 Sum_probs=136.6
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhC--cc-CccEEEECCeeCCCC----
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSV--LS-RSGLVLFAQTSSGNS---- 138 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl--~~-~~G~I~i~g~~i~~~---- 138 (273)
+++++|++++| +++++ |+++||+|++||+++|+||||||||||+|+|+|+ ++ ++|+|.++|+++...
T Consensus 3 ~l~~~~l~~~y--~~~~v----l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~ 76 (250)
T 2d2e_A 3 QLEIRDLWASI--DGETI----LKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDE 76 (250)
T ss_dssp EEEEEEEEEEE--TTEEE----EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHH
T ss_pred eEEEEeEEEEE--CCEEE----EeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHH
Confidence 58999999999 45667 9999999999999999999999999999999998 67 999999999998642
Q ss_pred --CccEEEEeccchhhhccCCcccccccccC----------C----HHHHHHHHHHhc----------cc-CCHHHHHHH
Q 024032 139 --SHTITMYMEEHNVMRSLQSGFCVYDSRGF----------N----YNRVHEGLEELS----------SW-MSEGVHHNQ 191 (273)
Q Consensus 139 --~~~i~~v~q~~~~~~~~~~~~tv~en~~~----------~----~~~~~~~l~~~~----------~~-LSgGqkq~~ 191 (273)
+..+++++|++.++ ..+||++|..+ . .+++.++++.++ .+ ||||||||.
T Consensus 77 ~~~~~i~~v~q~~~~~----~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv 152 (250)
T 2d2e_A 77 RARKGLFLAFQYPVEV----PGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRN 152 (250)
T ss_dssp HHHTTBCCCCCCCC-C----CSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHH
T ss_pred HHhCcEEEeccCCccc----cCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHH
Confidence 23478899988753 44588887321 1 234556666654 45 999999987
Q ss_pred ---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------ee-CCEEEEEeCCeEeeecChh
Q 024032 192 ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NI-AEIYKALKAGDSKPLDATK 250 (273)
Q Consensus 192 ---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~-ad~i~vl~~G~i~~~g~~~ 250 (273)
|+ +.+|++|||||||+|||+. +.++++.++ |+|||++ .+ ||++++|++|++++.|+++
T Consensus 153 ~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~ 229 (250)
T 2d2e_A 153 EILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGP-NFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPE 229 (250)
T ss_dssp HHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCST-TCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHH
T ss_pred HHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHH
Confidence 33 7899999999999999999 334555443 8999998 34 5999999999999999987
No 41
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=2.4e-39 Score=284.81 Aligned_cols=175 Identities=14% Similarity=0.103 Sum_probs=139.8
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccE
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i 142 (273)
...++++|++++|..+++++ |+++||+|++|++++|+||||||||||+|+|+|+++ ++|+|.++| ++
T Consensus 4 ~~~l~~~~l~~~y~~~~~~i----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g--------~i 71 (229)
T 2pze_A 4 TTEVVMENVTAFWEEGGTPV----LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--------RI 71 (229)
T ss_dssp CEEEEEEEEEECSSTTSCCS----EEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS--------CE
T ss_pred cceEEEEEEEEEeCCCCcee----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC--------EE
Confidence 45799999999996545566 999999999999999999999999999999999999 999999998 48
Q ss_pred EEEeccchhhhccCCcccccccccC----CHHHHHHHHHHhc--------------------ccCCHHHHHHH---Hh-c
Q 024032 143 TMYMEEHNVMRSLQSGFCVYDSRGF----NYNRVHEGLEELS--------------------SWMSEGVHHNQ---RC-L 194 (273)
Q Consensus 143 ~~v~q~~~~~~~~~~~~tv~en~~~----~~~~~~~~l~~~~--------------------~~LSgGqkq~~---r~-l 194 (273)
+|++|++.+ +..||+||..+ ......+.++.++ .+||||||||. |+ +
T Consensus 72 ~~v~q~~~~-----~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~ 146 (229)
T 2pze_A 72 SFCSQFSWI-----MPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVY 146 (229)
T ss_dssp EEECSSCCC-----CSBCHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHH
T ss_pred EEEecCCcc-----cCCCHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHh
Confidence 999999864 23499998432 2222222222211 48999999987 33 7
Q ss_pred CCCCEEEEcCcCCCCCHH--HHHHHH-Hh--cCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccC
Q 024032 195 RSDDCALMKNDAEIDDLK--SSPKYV-LR--RVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSA 255 (273)
Q Consensus 195 ~~p~iLlLDEPts~LD~~--~~l~~l-~~--~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~ 255 (273)
++|++|||||||++||+. ..+.++ .+ ..|+|||++ ..||++++|++|++++.|++++++..
T Consensus 147 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 219 (229)
T 2pze_A 147 KDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNL 219 (229)
T ss_dssp SCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHTC
T ss_pred cCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 999999999999999999 334332 11 127899988 34899999999999999999998764
No 42
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=2.4e-39 Score=286.33 Aligned_cols=173 Identities=14% Similarity=0.178 Sum_probs=137.6
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEEE
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~~ 144 (273)
.++++|++++|..+++++ |+++||+|++|++++|+||||||||||+|+|+|+++ ++|+|.++| .++|
T Consensus 3 ~l~~~~l~~~y~~~~~~v----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g--------~i~~ 70 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPT----LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG--------SVAY 70 (237)
T ss_dssp CEEEEEEEEESCTTSCCS----EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS--------CEEE
T ss_pred eEEEEEEEEEeCCCCCce----eeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC--------EEEE
Confidence 589999999995434556 999999999999999999999999999999999999 999999998 3899
Q ss_pred EeccchhhhccCCcccccccccC----CHHHHHHHHH------Hh--------------cccCCHHHHHHH---Hh-cCC
Q 024032 145 YMEEHNVMRSLQSGFCVYDSRGF----NYNRVHEGLE------EL--------------SSWMSEGVHHNQ---RC-LRS 196 (273)
Q Consensus 145 v~q~~~~~~~~~~~~tv~en~~~----~~~~~~~~l~------~~--------------~~~LSgGqkq~~---r~-l~~ 196 (273)
++|++. ++.+||+||..+ ..+...++++ .+ ..+||||||||. |+ +.+
T Consensus 71 v~Q~~~-----~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~ 145 (237)
T 2cbz_A 71 VPQQAW-----IQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSN 145 (237)
T ss_dssp ECSSCC-----CCSEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHC
T ss_pred EcCCCc-----CCCcCHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcC
Confidence 999875 346699998432 1122222222 11 157999999987 33 789
Q ss_pred CCEEEEcCcCCCCCHHH--HH-HHHH---h-cCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccC
Q 024032 197 DDCALMKNDAEIDDLKS--SP-KYVL---R-RVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSA 255 (273)
Q Consensus 197 p~iLlLDEPts~LD~~~--~l-~~l~---~-~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~ 255 (273)
|++|||||||++||+.. .+ ..+. + ..|+|||++ ..||++++|++|++++.|+++++++.
T Consensus 146 p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 218 (237)
T 2cbz_A 146 ADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLAR 218 (237)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHHH
T ss_pred CCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhhc
Confidence 99999999999999982 23 3331 1 238899988 45899999999999999999998753
No 43
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=2.8e-38 Score=283.83 Aligned_cols=178 Identities=14% Similarity=0.137 Sum_probs=144.4
Q ss_pred ceEEEEEEEEeecC--CeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeCCC--CCcc
Q 024032 66 LNELRHKFLSYRSG--DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGN--SSHT 141 (273)
Q Consensus 66 ~i~~~~v~~~y~~g--~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i~~--~~~~ 141 (273)
+++++|++++|..+ .+++ |+++||+|+ |++++|+||||||||||+|+|+|+++++|+|.++|+++.. .++.
T Consensus 1 ml~~~~l~~~y~~~~~~~~i----l~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~p~~G~I~~~g~~~~~~~~~~~ 75 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFS----LENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLPYSGNIFINGMEVRKIRNYIR 75 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEE----EEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGCSCCTT
T ss_pred CEEEEEEEEEeCCCCcccee----EEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCCCCCcEEEECCEECcchHHhhh
Confidence 37899999999531 1556 999999999 9999999999999999999999988779999999988742 2567
Q ss_pred EE-EEeccchhhhccCCccccccccc-------CCHHHHHHHHHHhc----------ccCCHHHHHHH---Hh-cCCCCE
Q 024032 142 IT-MYMEEHNVMRSLQSGFCVYDSRG-------FNYNRVHEGLEELS----------SWMSEGVHHNQ---RC-LRSDDC 199 (273)
Q Consensus 142 i~-~v~q~~~~~~~~~~~~tv~en~~-------~~~~~~~~~l~~~~----------~~LSgGqkq~~---r~-l~~p~i 199 (273)
++ |++|++.+ .+|++||.. ...+++.++++.++ .+||||||||. |+ +.+|++
T Consensus 76 i~~~v~Q~~~l------~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~l 149 (263)
T 2pjz_A 76 YSTNLPEAYEI------GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEI 149 (263)
T ss_dssp EEECCGGGSCT------TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSE
T ss_pred eEEEeCCCCcc------CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCE
Confidence 99 99998763 558998842 23556777777765 56999999987 33 799999
Q ss_pred EEEcCcCCCCCHH--HHH-HHHHhcCCcEEEEc--------eeCC-EEEEEeCCeEeeecChhhhccC
Q 024032 200 ALMKNDAEIDDLK--SSP-KYVLRRVDFAMVVS--------NIAE-IYKALKAGDSKPLDATKRLFSA 255 (273)
Q Consensus 200 LlLDEPts~LD~~--~~l-~~l~~~~g~tiiiv--------~~ad-~i~vl~~G~i~~~g~~~~l~~~ 255 (273)
|||||||++||+. ..+ +.+.+-.. |||++ .+|| ++++|++|++++.|+++++++.
T Consensus 150 llLDEPts~LD~~~~~~l~~~L~~~~~-tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~~ 216 (263)
T 2pjz_A 150 VGLDEPFENVDAARRHVISRYIKEYGK-EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLES 216 (263)
T ss_dssp EEEECTTTTCCHHHHHHHHHHHHHSCS-EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHTE
T ss_pred EEEECCccccCHHHHHHHHHHHHHhcC-cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHhh
Confidence 9999999999999 223 33333223 88888 5689 9999999999999999998754
No 44
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=2.3e-38 Score=276.34 Aligned_cols=167 Identities=18% Similarity=0.212 Sum_probs=134.1
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccE
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i 142 (273)
...++++|++++| ++ ++ |+++||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++...++.+
T Consensus 8 ~~~l~~~~ls~~y--~~-~i----l~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i 80 (214)
T 1sgw_A 8 GSKLEIRDLSVGY--DK-PV----LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKI 80 (214)
T ss_dssp -CEEEEEEEEEES--SS-EE----EEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGE
T ss_pred CceEEEEEEEEEe--CC-eE----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcE
Confidence 3579999999998 44 67 999999999999999999999999999999999999 9999999999875456779
Q ss_pred EEEeccchhhhccCCccccccccc---------CCHHHHHHHHHHhc--------ccCCHHHHHHH---Hh-cCCCCEEE
Q 024032 143 TMYMEEHNVMRSLQSGFCVYDSRG---------FNYNRVHEGLEELS--------SWMSEGVHHNQ---RC-LRSDDCAL 201 (273)
Q Consensus 143 ~~v~q~~~~~~~~~~~~tv~en~~---------~~~~~~~~~l~~~~--------~~LSgGqkq~~---r~-l~~p~iLl 201 (273)
+|++|++.+ +..+||+||.. ...+++.++++.++ .+||||||||. |+ +.+|++||
T Consensus 81 ~~v~q~~~~----~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lll 156 (214)
T 1sgw_A 81 FFLPEEIIV----PRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYV 156 (214)
T ss_dssp EEECSSCCC----CTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEE
T ss_pred EEEeCCCcC----CCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 999999875 34458988832 12456777888775 47999999987 33 78999999
Q ss_pred EcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeE
Q 024032 202 MKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDS 243 (273)
Q Consensus 202 LDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i 243 (273)
|||||++||+. +.++++.++ |.|||++ .+||+++++ .|+|
T Consensus 157 LDEPts~LD~~~~~~l~~~l~~~~~~-g~tiiivtHd~~~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 157 LDDPVVAIDEDSKHKVLKSILEILKE-KGIVIISSREELSYCDVNENLHKY-STKI 210 (214)
T ss_dssp EESTTTTSCTTTHHHHHHHHHHHHHH-HSEEEEEESSCCTTSSEEEEGGGG-BC--
T ss_pred EECCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEe-CCcc
Confidence 99999999999 345566555 8899998 345665543 4444
No 45
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=3.9e-38 Score=334.44 Aligned_cols=215 Identities=15% Similarity=0.174 Sum_probs=171.8
Q ss_pred hhhhhccchhhhhhhhHHHHHHHhchhhh---------ccCCCCceEEEEEEEEeecC-CeeeeccceeeeeeEEcCCcE
Q 024032 31 ECVKLKLDLPNVSTLTPRLRVLREMERLA---------LIAPDGLNELRHKFLSYRSG-DFWIPIGGIQKGGMDIPPVIT 100 (273)
Q Consensus 31 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~---------~~~~~~~i~~~~v~~~y~~g-~~~v~~~~L~~is~~i~~Ge~ 100 (273)
.+...-..++.+..+..|+.++++.++.. .....+.++++|++|+|+.+ +.++ |+|+||+|++||+
T Consensus 343 ~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~v----L~~isl~i~~G~~ 418 (1284)
T 3g5u_A 343 QASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQI----LKGLNLKVKSGQT 418 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCS----EEEEEEEECTTCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcccccCCCCCCCCCeEEEEEEEEEcCCCCCCcc----eecceEEEcCCCE
Confidence 33344456678888999999988754321 11123579999999999753 3456 9999999999999
Q ss_pred EEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCcccccccc-----cCCH
Q 024032 101 ILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSR-----GFNY 169 (273)
Q Consensus 101 ~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~-----~~~~ 169 (273)
+||+||||||||||+++|+|+++ ++|+|.++|.++.. +++++++++|++.+ +..||+||. ..+.
T Consensus 419 ~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l-----~~~ti~eNi~~g~~~~~~ 493 (1284)
T 3g5u_A 419 VALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVL-----FATTIAENIRYGREDVTM 493 (1284)
T ss_dssp EEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCC-----CSSCHHHHHHHHCSSCCH
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCcc-----CCccHHHHHhcCCCCCCH
Confidence 99999999999999999999999 99999999999864 46789999999974 445999993 2456
Q ss_pred HHHHHHHHHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHH
Q 024032 170 NRVHEGLEELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVL 219 (273)
Q Consensus 170 ~~~~~~l~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~ 219 (273)
+++.++++.++ .+||||||||. |+ +++|+|||||||||+||+. +.++.+.
T Consensus 494 ~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~ 573 (1284)
T 3g5u_A 494 DEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR 573 (1284)
T ss_dssp HHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc
Confidence 66666665543 47999999987 44 7899999999999999999 2233333
Q ss_pred hcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 220 RRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 220 ~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
+ |+|+|+| ..||+|++|++|+|++.|+++++++..
T Consensus 574 -~-~~t~i~itH~l~~i~~~d~i~vl~~G~i~~~g~~~~l~~~~ 615 (1284)
T 3g5u_A 574 -E-GRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREK 615 (1284)
T ss_dssp -T-TSEEEEECSCHHHHTTCSEEEECSSSCCCCEECHHHHHHTT
T ss_pred -C-CCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCC
Confidence 3 8999998 448999999999999999999998654
No 46
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1.2e-37 Score=330.73 Aligned_cols=215 Identities=15% Similarity=0.204 Sum_probs=172.5
Q ss_pred hhhhccchhhhhhhhHHHHHHHhchhhhc---------cCCCCceEEEEEEEEeecC-CeeeeccceeeeeeEEcCCcEE
Q 024032 32 CVKLKLDLPNVSTLTPRLRVLREMERLAL---------IAPDGLNELRHKFLSYRSG-DFWIPIGGIQKGGMDIPPVITI 101 (273)
Q Consensus 32 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~---------~~~~~~i~~~~v~~~y~~g-~~~v~~~~L~~is~~i~~Ge~~ 101 (273)
+......++.+..+..|+.++++.++... ....+.++++|++|+|+.+ +.++ |+|+||+|++||++
T Consensus 987 ~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~----l~~vsl~i~~Ge~v 1062 (1284)
T 3g5u_A 987 VSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPV----LQGLSLEVKKGQTL 1062 (1284)
T ss_dssp HTSSSCCSTHHHHHHHHHHHHHHSCCSSSSCCSSCCCTTTTSCCEEEEEEEBCCSCGGGCCS----BSSCCEEECSSSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCcEEEEEEEEECCCCCCCee----ecceeEEEcCCCEE
Confidence 33344566788889999999987653211 1123579999999999643 2345 99999999999999
Q ss_pred EEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCccccccccc-------CC
Q 024032 102 LLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSRG-------FN 168 (273)
Q Consensus 102 aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~~-------~~ 168 (273)
||+||||||||||+++|+|+++ ++|+|.++|+++.. +|+++++++|++. ++..||+||.. .+
T Consensus 1063 ~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~-----l~~~ti~eNi~~~~~~~~~~ 1137 (1284)
T 3g5u_A 1063 ALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPI-----LFDCSIAENIAYGDNSRVVS 1137 (1284)
T ss_dssp EEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCC-----CCSSBHHHHHTCCCSSCCCC
T ss_pred EEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCc-----cccccHHHHHhccCCCCCCC
Confidence 9999999999999999999999 99999999999874 5678999999986 44569999842 34
Q ss_pred HHHHHHHHHHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHH
Q 024032 169 YNRVHEGLEELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYV 218 (273)
Q Consensus 169 ~~~~~~~l~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l 218 (273)
.+++.++++.++ .+||||||||. |+ +++|++|||||||++||+. +.++++
T Consensus 1138 ~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~ 1217 (1284)
T 3g5u_A 1138 YEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA 1217 (1284)
T ss_dssp HHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHh
Confidence 566777766654 47999999987 44 7899999999999999999 223333
Q ss_pred HhcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccChh
Q 024032 219 LRRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSAPG 257 (273)
Q Consensus 219 ~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~~ 257 (273)
. + |+|+|+| ..||||++|++|+|++.|++++++++..
T Consensus 1218 ~-~-~~tvi~isH~l~~i~~~dri~vl~~G~i~~~g~~~~l~~~~g 1261 (1284)
T 3g5u_A 1218 R-E-GRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKG 1261 (1284)
T ss_dssp S-S-SSCEEEECSCTTGGGSCSEEEEEETBEEEEEECHHHHHHSCS
T ss_pred C-C-CCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCC
Confidence 2 3 8899888 4589999999999999999999986543
No 47
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=3.5e-37 Score=280.28 Aligned_cols=197 Identities=14% Similarity=0.101 Sum_probs=136.2
Q ss_pred cchhhhhhhhH-HHHHHHhchhhh-----ccCCCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCCh
Q 024032 37 LDLPNVSTLTP-RLRVLREMERLA-----LIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSG 110 (273)
Q Consensus 37 ~~~~~~~~~~~-r~~~~~~~~~~~-----~~~~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsG 110 (273)
..++.+..+.. ++.++++.+... .......++++|+++.+ +++ |+++||+|++|++++|+||||||
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----~~v----l~~isl~i~~Ge~~~i~G~NGsG 76 (290)
T 2bbs_A 5 VVMENVTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLG----TPV----LKDINFKIERGQLLAVAGSTGAG 76 (290)
T ss_dssp EEEEEEEECSSHHHHHHHHHCC-----------------------C----CCS----EEEEEEEECTTCEEEEEESTTSS
T ss_pred EeHHhhHHHHHHHHHHHhcccccccccccccCCCceEEEEEEEEcC----ceE----EEeeEEEEcCCCEEEEECCCCCc
Confidence 34444555555 777776644321 11123468999999853 345 99999999999999999999999
Q ss_pred HHHHHHHHhhCcc-CccEEEECCeeCCCCCccEEEEeccchhhhccCCccccccccc---CCHHHHHHHHHHhc------
Q 024032 111 KSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRG---FNYNRVHEGLEELS------ 180 (273)
Q Consensus 111 KSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en~~---~~~~~~~~~l~~~~------ 180 (273)
||||+|+|+|+++ ++|+|.++| +++|++|++.+ +..||+||.. .....+.+.++.++
T Consensus 77 KSTLlk~l~Gl~~p~~G~I~~~g--------~i~~v~Q~~~l-----~~~tv~enl~~~~~~~~~~~~~~~~~~l~~~l~ 143 (290)
T 2bbs_A 77 KTSLLMMIMGELEPSEGKIKHSG--------RISFCSQNSWI-----MPGTIKENIIGVSYDEYRYRSVIKACQLEEDIS 143 (290)
T ss_dssp HHHHHHHHTTSSCEEEEEEECCS--------CEEEECSSCCC-----CSSBHHHHHHTTCCCHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhcCCCCCCcEEEECC--------EEEEEeCCCcc-----CcccHHHHhhCcccchHHHHHHHHHhChHHHHH
Confidence 9999999999999 999999988 48999998764 2348998852 12222222222211
Q ss_pred --------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHHH--HHHHH-Hh--cCCcEEEEc-------e
Q 024032 181 --------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLKS--SPKYV-LR--RVDFAMVVS-------N 230 (273)
Q Consensus 181 --------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~~--~l~~l-~~--~~g~tiiiv-------~ 230 (273)
.+||||||||. |+ +.+|++|||||||+|||+.. .+.++ .+ ..|+|||++ .
T Consensus 144 ~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~ 223 (290)
T 2bbs_A 144 KFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK 223 (290)
T ss_dssp TSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH
T ss_pred hccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHH
Confidence 48999999987 33 79999999999999999993 33332 11 127899998 3
Q ss_pred eCCEEEEEeCCeEeeecChhhhcc
Q 024032 231 IAEIYKALKAGDSKPLDATKRLFS 254 (273)
Q Consensus 231 ~ad~i~vl~~G~i~~~g~~~~l~~ 254 (273)
.||++++|++|+++..|++++++.
T Consensus 224 ~~d~i~~l~~G~i~~~g~~~~l~~ 247 (290)
T 2bbs_A 224 KADKILILHEGSSYFYGTFSELQN 247 (290)
T ss_dssp HSSEEEEEETTEEEEEECHHHHHH
T ss_pred cCCEEEEEECCeEEEeCCHHHHhh
Confidence 489999999999999999999864
No 48
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=4.9e-33 Score=275.64 Aligned_cols=172 Identities=16% Similarity=0.160 Sum_probs=140.0
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEE
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~ 143 (273)
..+++++++++|. + .. |+.+||+|++||++||+||||||||||+|+|+|+++ ++|+|.+ ...++
T Consensus 356 ~~l~~~~l~~~~~--~-~~----l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~--------~~~i~ 420 (607)
T 3bk7_A 356 TLVEYPRLVKDYG--S-FK----LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW--------DLTVA 420 (607)
T ss_dssp EEEEECCEEEECS--S-CE----EEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC--------CCCEE
T ss_pred eEEEEeceEEEec--c-eE----EEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE--------eeEEE
Confidence 3688999999883 3 24 999999999999999999999999999999999999 9999986 24689
Q ss_pred EEeccchhhhccCCcccccccccC-------CHHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCCEEEEc
Q 024032 144 MYMEEHNVMRSLQSGFCVYDSRGF-------NYNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDDCALMK 203 (273)
Q Consensus 144 ~v~q~~~~~~~~~~~~tv~en~~~-------~~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~iLlLD 203 (273)
|++|++.. .+.+||.++... ..+.+.++++.++ .+||||||||+ |+ +.+|++||||
T Consensus 421 ~v~Q~~~~----~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLD 496 (607)
T 3bk7_A 421 YKPQYIKA----EYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLD 496 (607)
T ss_dssp EECSSCCC----CCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred EEecCccC----CCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence 99998764 355688776321 2334566777776 68999999987 33 7899999999
Q ss_pred CcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeC--CeEeeecChhhhccC
Q 024032 204 NDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKA--GDSKPLDATKRLFSA 255 (273)
Q Consensus 204 EPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~--G~i~~~g~~~~l~~~ 255 (273)
|||++||+. +.++++.++.|.|||+| .+|||+++|++ |++...|+++++++.
T Consensus 497 EPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~~ 564 (607)
T 3bk7_A 497 EPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMREG 564 (607)
T ss_dssp CTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHHH
T ss_pred CCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHhh
Confidence 999999999 34556654458999998 56899999986 888889999998753
No 49
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.98 E-value=5.9e-33 Score=271.71 Aligned_cols=172 Identities=15% Similarity=0.153 Sum_probs=137.6
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEE
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~ 143 (273)
..++++++++.|. + .. |+.+||+|++||++||+||||||||||+|+|+|+++ ++|+|.+ ...++
T Consensus 286 ~~l~~~~l~~~~~--~-~~----l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~--------~~~i~ 350 (538)
T 1yqt_A 286 TLVTYPRLVKDYG--S-FR----LEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW--------DLTVA 350 (538)
T ss_dssp EEEEECCEEEEET--T-EE----EEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC--------CCCEE
T ss_pred eEEEEeeEEEEEC--C-EE----EEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE--------CceEE
Confidence 3689999998883 3 24 999999999999999999999999999999999999 9999986 24689
Q ss_pred EEeccchhhhccCCcccccccccC-------CHHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCCEEEEc
Q 024032 144 MYMEEHNVMRSLQSGFCVYDSRGF-------NYNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDDCALMK 203 (273)
Q Consensus 144 ~v~q~~~~~~~~~~~~tv~en~~~-------~~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~iLlLD 203 (273)
|++|++.. .+.+||.++... ..+.+.++++.++ .+||||||||. |+ +.+|++||||
T Consensus 351 ~v~Q~~~~----~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLD 426 (538)
T 1yqt_A 351 YKPQYIKA----DYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLD 426 (538)
T ss_dssp EECSSCCC----CCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred EEecCCcC----CCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence 99998764 355688776321 1233455555554 68999999987 33 7899999999
Q ss_pred CcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeC--CeEeeecChhhhccC
Q 024032 204 NDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKA--GDSKPLDATKRLFSA 255 (273)
Q Consensus 204 EPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~--G~i~~~g~~~~l~~~ 255 (273)
|||+|||+. +.++++.++.|.|||+| .+||||++|++ |+++..|+++++++.
T Consensus 427 EPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~~ 494 (538)
T 1yqt_A 427 EPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMREG 494 (538)
T ss_dssp CTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHHH
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHhh
Confidence 999999999 34555554348999998 56899999986 788889999988753
No 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.97 E-value=1e-31 Score=262.89 Aligned_cols=171 Identities=13% Similarity=0.066 Sum_probs=133.2
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEE
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~ 143 (273)
..++++++++.|. + .. |..+||+|++||++||+||||||||||+|+|+|+++ ++|+|.+++. .++
T Consensus 268 ~~l~~~~l~~~~~--~-~~----l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------~i~ 333 (538)
T 3ozx_A 268 TKMKWTKIIKKLG--D-FQ----LVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQ-------ILS 333 (538)
T ss_dssp EEEEECCEEEEET--T-EE----EEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCC-------CEE
T ss_pred ceEEEcceEEEEC--C-EE----EEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCe-------eeE
Confidence 3688999999884 3 33 888899999999999999999999999999999999 9999997653 478
Q ss_pred EEeccchhhhccCCccccccccc--------CCHHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCCEEEE
Q 024032 144 MYMEEHNVMRSLQSGFCVYDSRG--------FNYNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDDCALM 202 (273)
Q Consensus 144 ~v~q~~~~~~~~~~~~tv~en~~--------~~~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~iLlL 202 (273)
+++|+... .+..||.+|.. .....+.++++.++ .+||||||||+ |+ +.+|++|||
T Consensus 334 ~~~q~~~~----~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlL 409 (538)
T 3ozx_A 334 YKPQRIFP----NYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVL 409 (538)
T ss_dssp EECSSCCC----CCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEE
T ss_pred eechhccc----ccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 88887553 34567877621 11233455555554 78999999987 33 799999999
Q ss_pred cCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeC--CeEeeecChhhhc
Q 024032 203 KNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKA--GDSKPLDATKRLF 253 (273)
Q Consensus 203 DEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~--G~i~~~g~~~~l~ 253 (273)
||||+|||+. +.++++.++.|.|||+| .+||||++|++ |.+...+++.++.
T Consensus 410 DEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 410 DQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp ESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred eCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 9999999999 34566765558999888 56899999986 5555666665543
No 51
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.97 E-value=3e-31 Score=272.98 Aligned_cols=174 Identities=17% Similarity=0.160 Sum_probs=126.0
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEE
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~ 143 (273)
.+++++|++++|+.+++++ |+++||+|++|+++||+||||||||||+|+|+|+++ ++|+|+++|. .+++
T Consensus 670 ~mL~v~nLs~~Y~g~~~~i----L~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~------~~I~ 739 (986)
T 2iw3_A 670 AIVKVTNMEFQYPGTSKPQ----ITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN------CRIA 739 (986)
T ss_dssp EEEEEEEEEECCTTCSSCS----EEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT------CCEE
T ss_pred ceEEEEeeEEEeCCCCcee----eeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc------cceE
Confidence 3699999999985333556 999999999999999999999999999999999999 9999999863 1356
Q ss_pred EEeccchhh-h-c-------------------------------------------------------------------
Q 024032 144 MYMEEHNVM-R-S------------------------------------------------------------------- 154 (273)
Q Consensus 144 ~v~q~~~~~-~-~------------------------------------------------------------------- 154 (273)
|++|++... . .
T Consensus 740 yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~ 819 (986)
T 2iw3_A 740 YIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYEC 819 (986)
T ss_dssp EECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEE
T ss_pred eeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhh
Confidence 666543210 0 0
Q ss_pred -------------cCCccccccccc------------------------------CCHHHHHHHHHHhc-----------
Q 024032 155 -------------LQSGFCVYDSRG------------------------------FNYNRVHEGLEELS----------- 180 (273)
Q Consensus 155 -------------~~~~~tv~en~~------------------------------~~~~~~~~~l~~~~----------- 180 (273)
.+..+|+.+|.. ...+++.+.++.++
T Consensus 820 ~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~~ 899 (986)
T 2iw3_A 820 SFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRI 899 (986)
T ss_dssp EEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSCG
T ss_pred hhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCCCc
Confidence 000112222210 11334555665544
Q ss_pred ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHHH--HHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeee
Q 024032 181 SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLKS--SPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPL 246 (273)
Q Consensus 181 ~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~~--~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~ 246 (273)
.+||||||||. |+ +.+|++|||||||+|||+.. .+.++.++.+.|||+| .+||++++|++|+++..
T Consensus 900 ~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~tVIiISHD~e~v~~l~DrVivL~~G~Iv~~ 979 (986)
T 2iw3_A 900 RGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTKNLTEEVWAVKDGRMTPS 979 (986)
T ss_dssp GGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSCSSEEEEECSCHHHHTTTCCEEECCBTTBCCC-
T ss_pred cccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence 57999999987 33 78999999999999999993 3333334457899888 56899999999999877
Q ss_pred cC
Q 024032 247 DA 248 (273)
Q Consensus 247 g~ 248 (273)
|+
T Consensus 980 G~ 981 (986)
T 2iw3_A 980 GH 981 (986)
T ss_dssp --
T ss_pred CC
Confidence 64
No 52
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=8.6e-31 Score=259.49 Aligned_cols=169 Identities=14% Similarity=0.105 Sum_probs=132.7
Q ss_pred EEEEEEeecCCeeeeccceeeeeeEEcCC-----cEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEE
Q 024032 70 RHKFLSYRSGDFWIPIGGIQKGGMDIPPV-----ITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (273)
Q Consensus 70 ~~v~~~y~~g~~~v~~~~L~~is~~i~~G-----e~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~ 143 (273)
++++++|+. ...+ ++++||++.+| |++||+||||||||||+++|+|+++ ++|+. + .+..++
T Consensus 350 ~~~~~~y~~-~~~~----l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~--~~~~i~ 416 (608)
T 3j16_B 350 ASRAFSYPS-LKKT----QGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------I--PKLNVS 416 (608)
T ss_dssp SSSCCEECC-EEEE----CSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------C--CSCCEE
T ss_pred cceeEEecC-cccc----cCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------c--cCCcEE
Confidence 456677742 2334 99999999999 7899999999999999999999999 99963 1 134689
Q ss_pred EEeccchhhhccCCcccccccc-------cCCHHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCCEEEEc
Q 024032 144 MYMEEHNVMRSLQSGFCVYDSR-------GFNYNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDDCALMK 203 (273)
Q Consensus 144 ~v~q~~~~~~~~~~~~tv~en~-------~~~~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~iLlLD 203 (273)
+++|+... .+..||.++. ......+.++++.++ .+||||||||+ |+ +.+|++||||
T Consensus 417 ~~~q~~~~----~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLD 492 (608)
T 3j16_B 417 MKPQKIAP----KFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLID 492 (608)
T ss_dssp EECSSCCC----CCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEEC
T ss_pred Eecccccc----cCCccHHHHHHHHhhcccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 99997653 3445777652 123445666777776 68999999987 33 7899999999
Q ss_pred CcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeC--CeEeeecChhhhccC
Q 024032 204 NDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKA--GDSKPLDATKRLFSA 255 (273)
Q Consensus 204 EPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~--G~i~~~g~~~~l~~~ 255 (273)
|||+|||+. +.++++.++.|.|||+| .+||||++|++ |+++..|+|+++++.
T Consensus 493 EPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 493 EPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp CTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 999999998 34566654448999999 56899999986 999999999999875
No 53
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.97 E-value=6.7e-31 Score=260.35 Aligned_cols=167 Identities=12% Similarity=0.110 Sum_probs=128.1
Q ss_pred ceEE--------EEEEEEeecCCe-eeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEE-------
Q 024032 66 LNEL--------RHKFLSYRSGDF-WIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLV------- 128 (273)
Q Consensus 66 ~i~~--------~~v~~~y~~g~~-~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I------- 128 (273)
.|++ +|++++|. +. .+ |+++| +|++||++||+||||||||||+|+|+|+++ ++|++
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg--~~~~~----l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~ 155 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYG--VNAFV----LYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNV 155 (607)
T ss_dssp CCEEEEECTTGGGSEEEECS--TTCCE----EECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHH
T ss_pred eEEEecCCccccCCeEEEEC--CCCee----eCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchh
Confidence 5777 78888884 33 35 99999 999999999999999999999999999998 99996
Q ss_pred --EECCeeCCC-------CCccEEEEeccchhhhccCCccccccccc--CCHHHHHHHHHHhc---------ccCCHHHH
Q 024032 129 --LFAQTSSGN-------SSHTITMYMEEHNVMRSLQSGFCVYDSRG--FNYNRVHEGLEELS---------SWMSEGVH 188 (273)
Q Consensus 129 --~i~g~~i~~-------~~~~i~~v~q~~~~~~~~~~~~tv~en~~--~~~~~~~~~l~~~~---------~~LSgGqk 188 (273)
.++|.++.. .+..+++++|....++.. +..|+.+|.. ...+++.++++.++ .+||||||
T Consensus 156 ~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGek 234 (607)
T 3bk7_A 156 IRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKA-VKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGEL 234 (607)
T ss_dssp HHHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGT-CCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHH
T ss_pred hheeCCEehhhhhhhhhhhhcceEEeechhhhchhh-ccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHH
Confidence 456655421 124577888876554432 2237777632 12235667777776 68999999
Q ss_pred HHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCC
Q 024032 189 HNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAG 241 (273)
Q Consensus 189 q~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G 241 (273)
||. |+ +.+|++|||||||++||+. +.++++.++ |.|||+| .+||+|++|+++
T Consensus 235 QRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~-g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 235 QRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANE-GKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp HHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred HHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhc-CCEEEEEecChHHHHhhCCEEEEECCC
Confidence 987 33 7999999999999999999 346666655 8999999 458999999865
No 54
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.97 E-value=5.1e-31 Score=257.98 Aligned_cols=163 Identities=12% Similarity=0.118 Sum_probs=124.1
Q ss_pred EEEEEEeecCCe-eeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEE---------EECCeeCCC-
Q 024032 70 RHKFLSYRSGDF-WIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLV---------LFAQTSSGN- 137 (273)
Q Consensus 70 ~~v~~~y~~g~~-~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I---------~i~g~~i~~- 137 (273)
+|++++|. +. .+ |+++| +|++||++||+||||||||||+|+|+|+++ ++|++ .++|.++..
T Consensus 25 ~~ls~~yg--~~~~~----l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~ 97 (538)
T 1yqt_A 25 EDCVHRYG--VNAFV----LYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNY 97 (538)
T ss_dssp CCEEEECS--TTCCE----EECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHH
T ss_pred cCcEEEEC--Ccccc----ccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHH
Confidence 58889884 33 35 99999 999999999999999999999999999998 99995 356654421
Q ss_pred ------CCccEEEEeccchhhhccCCccccccccc--CCHHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCC
Q 024032 138 ------SSHTITMYMEEHNVMRSLQSGFCVYDSRG--FNYNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRS 196 (273)
Q Consensus 138 ------~~~~i~~v~q~~~~~~~~~~~~tv~en~~--~~~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~ 196 (273)
.+..+++++|....++... ..++.++.. ...+++.++++.++ .+||||||||+ ++ +.+
T Consensus 98 ~~~~~~~~~~~~~~~q~~~~~~~~~-~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~ 176 (538)
T 1yqt_A 98 FEKLKNGEIRPVVKPQYVDLIPKAV-KGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRN 176 (538)
T ss_dssp HHHHHTTSCCCEEECSCGGGSGGGC-CSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHhhhhhhhhhhhhhcchhh-hccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 2245778888765544322 236666531 11234667788776 68999999987 33 799
Q ss_pred CCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCC
Q 024032 197 DDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAG 241 (273)
Q Consensus 197 p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G 241 (273)
|++|||||||++||+. +.++++.++ |.|||+| .+||+|++|++|
T Consensus 177 P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~-g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 177 ATFYFFDEPSSYLDIRQRLNAARAIRRLSEE-GKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 9999999999999999 345666654 8999999 468999999864
No 55
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.96 E-value=2.3e-30 Score=259.08 Aligned_cols=169 Identities=16% Similarity=0.182 Sum_probs=107.7
Q ss_pred ceeeeeeEEcCCcEEEEEcCCCChHHHHH---------------------HHHhhCcc-C-------ccEEEECCeeCCC
Q 024032 87 GIQKGGMDIPPVITILLMGFSGSGKSSLV---------------------NLMYSVLS-R-------SGLVLFAQTSSGN 137 (273)
Q Consensus 87 ~L~~is~~i~~Ge~~aivGpnGsGKSTLl---------------------~ll~gl~~-~-------~G~I~i~g~~i~~ 137 (273)
+|++|||+|++||++||+||||||||||+ +++.|+.. + .|.|.++|.+...
T Consensus 33 ~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~~~ 112 (670)
T 3ux8_A 33 NLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTTSR 112 (670)
T ss_dssp TCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC---
T ss_pred ceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchhhc
Confidence 49999999999999999999999999998 88888876 6 4556666655432
Q ss_pred -CCccEEEEeccchhhhc---------------cCCcccccccccCC------H--HH-----H------HHHHHHhc--
Q 024032 138 -SSHTITMYMEEHNVMRS---------------LQSGFCVYDSRGFN------Y--NR-----V------HEGLEELS-- 180 (273)
Q Consensus 138 -~~~~i~~v~q~~~~~~~---------------~~~~~tv~en~~~~------~--~~-----~------~~~l~~~~-- 180 (273)
.++.+++++|....+.. .+..+||+||..+. . .. + .+.++.++
T Consensus 113 ~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gL~ 192 (670)
T 3ux8_A 113 NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNVGLD 192 (670)
T ss_dssp --CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHHTTCT
T ss_pred cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHcCCc
Confidence 23344444443332110 12345788874321 0 00 0 11244432
Q ss_pred --------ccCCHHHHHHH---Hh-cCCCC--EEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCC
Q 024032 181 --------SWMSEGVHHNQ---RC-LRSDD--CALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAE 233 (273)
Q Consensus 181 --------~~LSgGqkq~~---r~-l~~p~--iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad 233 (273)
.+||||||||. |+ +.+|+ +|||||||+|||+. +.++++.++ |.|||+| ..||
T Consensus 193 ~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~-g~tvi~vtHd~~~~~~~d 271 (670)
T 3ux8_A 193 YLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDL-GNTLIVVEHDEDTMLAAD 271 (670)
T ss_dssp TCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHT-TCEEEEECCCHHHHHHCS
T ss_pred hhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHhhCC
Confidence 67999999987 44 67887 99999999999999 445667655 9999999 4489
Q ss_pred EEEEE------eCCeEeeecChhhhccCh
Q 024032 234 IYKAL------KAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 234 ~i~vl------~~G~i~~~g~~~~l~~~~ 256 (273)
++++| ++|++++.|+++++.+++
T Consensus 272 ~ii~l~~g~~~~~G~i~~~g~~~~~~~~~ 300 (670)
T 3ux8_A 272 YLIDIGPGAGIHGGEVVAAGTPEEVMNDP 300 (670)
T ss_dssp EEEEECSSSGGGCCSEEEEECHHHHHTCT
T ss_pred EEEEecccccccCCEEEEecCHHHHhcCc
Confidence 99999 899999999999998754
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.96 E-value=1.7e-29 Score=259.95 Aligned_cols=171 Identities=17% Similarity=0.133 Sum_probs=128.1
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeCCCCCccEEEE
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMY 145 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i~~~~~~i~~v 145 (273)
.+...|++++| +++.+ |+++||+|++|++++|+||||||||||+|+|+| |+| +|.+.... .+++++
T Consensus 435 ~L~~~~ls~~y--g~~~i----L~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag-----G~i--~g~~~~~~-~~~~~v 500 (986)
T 2iw3_A 435 DLCNCEFSLAY--GAKIL----LNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN-----GQV--DGFPTQEE-CRTVYV 500 (986)
T ss_dssp EEEEEEEEEEE--TTEEE----EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH-----TCS--TTCCCTTT-SCEEET
T ss_pred eeEEeeEEEEE--CCEEe----EecceEEEcCCCEEEEECCCCCCHHHHHHHHhC-----CCc--CCCccccc-eeEEEE
Confidence 34455666665 66777 999999999999999999999999999999996 444 44443221 235676
Q ss_pred eccchhhhccCCcccccccccC----CHHHHHHHHHHhc----------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCC
Q 024032 146 MEEHNVMRSLQSGFCVYDSRGF----NYNRVHEGLEELS----------SWMSEGVHHNQ---RC-LRSDDCALMKNDAE 207 (273)
Q Consensus 146 ~q~~~~~~~~~~~~tv~en~~~----~~~~~~~~l~~~~----------~~LSgGqkq~~---r~-l~~p~iLlLDEPts 207 (273)
+|+... ++..+|+.+|... ..+++.+.++.++ .+||||||||. |+ +.+|++|||||||+
T Consensus 501 ~q~~~~---~~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs 577 (986)
T 2iw3_A 501 EHDIDG---THSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTN 577 (986)
T ss_dssp TCCCCC---CCTTSBHHHHHHTTCSSCHHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTT
T ss_pred cccccc---cccCCcHHHHHHHhhcCHHHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCcc
Confidence 665421 1345588776421 1566777777766 58999999987 33 79999999999999
Q ss_pred CCCHHH--H-HHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEe-eecChhhhcc
Q 024032 208 IDDLKS--S-PKYVLRRVDFAMVVS--------NIAEIYKALKAGDSK-PLDATKRLFS 254 (273)
Q Consensus 208 ~LD~~~--~-l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~-~~g~~~~l~~ 254 (273)
+||+.. . ...+.+ .|.|||++ .+||++++|++|+++ ..|++++++.
T Consensus 578 ~LD~~~~~~l~~~L~~-~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 578 HLDTVNVAWLVNYLNT-CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp TCCHHHHHHHHHHHHH-SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred CCCHHHHHHHHHHHHh-CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 999992 2 333444 48999999 568999999999997 5899988763
No 57
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.96 E-value=7.1e-29 Score=248.25 Aligned_cols=168 Identities=17% Similarity=0.203 Sum_probs=114.6
Q ss_pred ceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHh----------------------hCccCccEEEECCeeCCCCCc----
Q 024032 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMY----------------------SVLSRSGLVLFAQTSSGNSSH---- 140 (273)
Q Consensus 87 ~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~----------------------gl~~~~G~I~i~g~~i~~~~~---- 140 (273)
+|++|||+|++||++||+||||||||||+++|. |+....|.|.+++.++.....
T Consensus 337 ~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~~~~i~~~~~~~~~~~~~~~~ 416 (670)
T 3ux8_A 337 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPA 416 (670)
T ss_dssp TCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGCSEEEECCSSCSCSSTTCCHH
T ss_pred ccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhcccccccccccccccccCceeEeccccCCCCCCcchh
Confidence 499999999999999999999999999998764 333345678888877642110
Q ss_pred ------------------------------------------cEEEEeccchhhhcc-----------------------
Q 024032 141 ------------------------------------------TITMYMEEHNVMRSL----------------------- 155 (273)
Q Consensus 141 ------------------------------------------~i~~v~q~~~~~~~~----------------------- 155 (273)
..++++++..+++..
T Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (670)
T 3ux8_A 417 TYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKG 496 (670)
T ss_dssp HHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCCBTT
T ss_pred hhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhheeecC
Confidence 012222222211110
Q ss_pred -----CCcccccccccC-----CHHHHHHHHHHhc----------ccCCHHHHHHH---Hh-cCC---CCEEEEcCcCCC
Q 024032 156 -----QSGFCVYDSRGF-----NYNRVHEGLEELS----------SWMSEGVHHNQ---RC-LRS---DDCALMKNDAEI 208 (273)
Q Consensus 156 -----~~~~tv~en~~~-----~~~~~~~~l~~~~----------~~LSgGqkq~~---r~-l~~---p~iLlLDEPts~ 208 (273)
...+||.+|..+ ..++..+.++.++ .+||||||||+ |+ +.+ |++|||||||+|
T Consensus 497 ~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~ 576 (670)
T 3ux8_A 497 KNIAEVLDMTVEDALDFFASIPKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTG 576 (670)
T ss_dssp BCHHHHHTSBHHHHHHHTTTCHHHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTT
T ss_pred CCHHHHhhCCHHHHHHHHHHhhhHHHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCC
Confidence 012355555221 1123444555543 68999999987 44 455 469999999999
Q ss_pred CCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEE------eCCeEeeecChhhhccC
Q 024032 209 DDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKAL------KAGDSKPLDATKRLFSA 255 (273)
Q Consensus 209 LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl------~~G~i~~~g~~~~l~~~ 255 (273)
||+. +.++++.++ |.|||+| ..||+|++| ++|+|++.|+++++.+.
T Consensus 577 LD~~~~~~i~~~l~~l~~~-g~tvi~vtHd~~~~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~~~ 641 (670)
T 3ux8_A 577 LHVDDIARLLDVLHRLVDN-GDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEV 641 (670)
T ss_dssp CCHHHHHHHHHHHHHHHHT-TCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEECHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHhCCEEEEecCCcCCCCCEEEEecCHHHHHhC
Confidence 9999 346667655 9999999 458999999 89999999999999754
No 58
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.94 E-value=1.1e-27 Score=234.22 Aligned_cols=162 Identities=14% Similarity=0.142 Sum_probs=113.2
Q ss_pred EEEEEeecCCeeeeccceeeeeeE-EcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEE-----------EECCeeCCC
Q 024032 71 HKFLSYRSGDFWIPIGGIQKGGMD-IPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLV-----------LFAQTSSGN 137 (273)
Q Consensus 71 ~v~~~y~~g~~~v~~~~L~~is~~-i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I-----------~i~g~~i~~ 137 (273)
+...+|..++ ++-..+. +++||++||+||||||||||+|+|+|+++ ++|+| .+.|.++..
T Consensus 4 ~~~~~~~~~~-------f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~ 76 (538)
T 3ozx_A 4 EVIHRYKVNG-------FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYN 76 (538)
T ss_dssp CEEEESSTTS-------CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHH
T ss_pred CCceecCCCc-------eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHH
Confidence 3456665444 4444454 45999999999999999999999999998 99998 567766531
Q ss_pred -------CCccEEEEeccchhhhccCCccccccccc--CCHHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cC
Q 024032 138 -------SSHTITMYMEEHNVMRSLQSGFCVYDSRG--FNYNRVHEGLEELS---------SWMSEGVHHNQ---RC-LR 195 (273)
Q Consensus 138 -------~~~~i~~v~q~~~~~~~~~~~~tv~en~~--~~~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~ 195 (273)
....+...+|.....+. .+..++.++.. ...+.+.++++.++ .+||||||||+ ++ +.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~ 155 (538)
T 3ozx_A 77 YFKELYSNELKIVHKIQYVEYASK-FLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLR 155 (538)
T ss_dssp HHHHHHTTCCCEEEECSCTTGGGT-TCCSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHS
T ss_pred HHHHHhhcccchhhccchhhhhhh-hccCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHc
Confidence 11234445554433322 22335554321 11234556677666 78999999987 33 78
Q ss_pred CCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCe
Q 024032 196 SDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGD 242 (273)
Q Consensus 196 ~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~ 242 (273)
+|++|||||||++||+. +.++++. + |+|||+| .+||+|++|++|.
T Consensus 156 ~p~illlDEPts~LD~~~~~~l~~~l~~l~-~-g~tii~vsHdl~~~~~~~d~i~vl~~~~ 214 (538)
T 3ozx_A 156 EADVYIFDQPSSYLDVRERMNMAKAIRELL-K-NKYVIVVDHDLIVLDYLTDLIHIIYGES 214 (538)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHC-T-TSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHh-C-CCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence 99999999999999998 3345554 3 8999999 5689999998754
No 59
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.94 E-value=3.5e-27 Score=233.60 Aligned_cols=166 Identities=14% Similarity=0.095 Sum_probs=111.2
Q ss_pred EEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEE-----------ECCeeCCC-
Q 024032 71 HKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVL-----------FAQTSSGN- 137 (273)
Q Consensus 71 ~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~-----------i~g~~i~~- 137 (273)
+++++|..+ ... |++++ .+++||++||+||||||||||+|+|+|+++ ++|+|. +.|..+..
T Consensus 82 ~~~~~Y~~~-~~~----l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~ 155 (608)
T 3j16_B 82 HVTHRYSAN-SFK----LHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNY 155 (608)
T ss_dssp TEEEECSTT-SCE----EECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHH
T ss_pred CeEEEECCC-cee----ecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhh
Confidence 456666432 223 67766 689999999999999999999999999999 999982 33332211
Q ss_pred ----CCccE--EEEeccchhhhccCC--cccccccc----cCCHHHHHHHHHHhc---------ccCCHHHHHHH---Hh
Q 024032 138 ----SSHTI--TMYMEEHNVMRSLQS--GFCVYDSR----GFNYNRVHEGLEELS---------SWMSEGVHHNQ---RC 193 (273)
Q Consensus 138 ----~~~~i--~~v~q~~~~~~~~~~--~~tv~en~----~~~~~~~~~~l~~~~---------~~LSgGqkq~~---r~ 193 (273)
....+ .+.+|....++.... ..++.++. ....+.+.++++.++ .+||||||||. ++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAra 235 (608)
T 3j16_B 156 FTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMS 235 (608)
T ss_dssp HHHHHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHH
T ss_pred hhHHHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHH
Confidence 00111 122222111111000 01222221 123467788888887 78999999987 33
Q ss_pred -cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeE
Q 024032 194 -LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDS 243 (273)
Q Consensus 194 -l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i 243 (273)
+.+|++|||||||++||+. +.++++.++ |.|||+| .+||+|++|++|..
T Consensus 236 L~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~-g~tvi~vtHdl~~~~~~~drv~vl~~~~~ 299 (608)
T 3j16_B 236 CVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAP-TKYVICVEHDLSVLDYLSDFVCIIYGVPS 299 (608)
T ss_dssp HHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTT-TCEEEEECSCHHHHHHHCSEEEEEESCTT
T ss_pred HHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEeCCcc
Confidence 7899999999999999998 334555554 8999999 46899999988654
No 60
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.93 E-value=4.2e-26 Score=232.45 Aligned_cols=181 Identities=18% Similarity=0.164 Sum_probs=123.7
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHH-HhhCcc-------------------
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNL-MYSVLS------------------- 123 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~l-l~gl~~------------------- 123 (273)
...++++++++. . |++|||+|++|+++||+|+||||||||+++ |+|++.
T Consensus 500 ~~~L~v~~l~~~-------~----L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~ 568 (842)
T 2vf7_A 500 AGWLELNGVTRN-------N----LDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPAD 568 (842)
T ss_dssp SCEEEEEEEEET-------T----EEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC--------------
T ss_pred CceEEEEeeeec-------c----cccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccc
Confidence 346899998751 2 999999999999999999999999999996 776541
Q ss_pred -------Ccc-------EEEECCeeCCCCCc------------------------cEEEEec------------------
Q 024032 124 -------RSG-------LVLFAQTSSGNSSH------------------------TITMYME------------------ 147 (273)
Q Consensus 124 -------~~G-------~I~i~g~~i~~~~~------------------------~i~~v~q------------------ 147 (273)
.+| .|.++|.++....+ .+++..+
T Consensus 569 ~~~~~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G 648 (842)
T 2vf7_A 569 HTAGSARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEG 648 (842)
T ss_dssp ---CCCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCS
T ss_pred cccccccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCC
Confidence 256 67888877642111 0011100
Q ss_pred ----cchhhhc--------------------cCCcccccccccCC-------------HHHHHHHHHHhc----------
Q 024032 148 ----EHNVMRS--------------------LQSGFCVYDSRGFN-------------YNRVHEGLEELS---------- 180 (273)
Q Consensus 148 ----~~~~~~~--------------------~~~~~tv~en~~~~-------------~~~~~~~l~~~~---------- 180 (273)
+...++. .+...++.|+..+. .+++.+.++.++
T Consensus 649 ~~~~~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~~~~~~~~~~~L~~~gL~~~~l~~~~ 728 (842)
T 2vf7_A 649 WVMVELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFADESAIFRALDTLREVGLGYLRLGQPA 728 (842)
T ss_dssp EEEETTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTTSHHHHHHHHHHHHTTCTTSBTTCCG
T ss_pred ccchhhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhcchHHHHHHHHHHHcCCCcccccCCc
Confidence 0000000 00112222221111 123455666655
Q ss_pred ccCCHHHHHHHH---h-cCC---CCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEE--
Q 024032 181 SWMSEGVHHNQR---C-LRS---DDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKAL-- 238 (273)
Q Consensus 181 ~~LSgGqkq~~r---~-l~~---p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl-- 238 (273)
.+||||||||+. + +++ |++|||||||+|||+. +.++++.++ |.|||+| ..||+|++|
T Consensus 729 ~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~-G~tVIvisHdl~~i~~aDrii~L~p 807 (842)
T 2vf7_A 729 TELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDA-GNTVIAVEHKMQVVAASDWVLDIGP 807 (842)
T ss_dssp GGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECCCHHHHTTCSEEEEECS
T ss_pred ccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEcCCHHHHHhCCEEEEECC
Confidence 689999999873 3 454 7999999999999999 345566655 9999999 558999999
Q ss_pred ----eCCeEeeecChhhhccCh
Q 024032 239 ----KAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 239 ----~~G~i~~~g~~~~l~~~~ 256 (273)
++|+|++.|+++++++.+
T Consensus 808 ~~g~~~G~Iv~~g~~~el~~~~ 829 (842)
T 2vf7_A 808 GAGEDGGRLVAQGTPAEVAQAA 829 (842)
T ss_dssp SSGGGCCSEEEEECHHHHTTCT
T ss_pred CCCCCCCEEEEEcCHHHHHhCc
Confidence 799999999999998654
No 61
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.93 E-value=2.7e-26 Score=235.53 Aligned_cols=86 Identities=12% Similarity=0.113 Sum_probs=68.8
Q ss_pred HHHHHHHHhc----------ccCCHHHHHHH---Hh-cCC---CCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEE
Q 024032 171 RVHEGLEELS----------SWMSEGVHHNQ---RC-LRS---DDCALMKNDAEIDDLK------SSPKYVLRRVDFAMV 227 (273)
Q Consensus 171 ~~~~~l~~~~----------~~LSgGqkq~~---r~-l~~---p~iLlLDEPts~LD~~------~~l~~l~~~~g~tii 227 (273)
++.+.++.++ .+|||||+||+ |+ +++ |++|||||||+|||+. +.++++.++ |.|||
T Consensus 784 ~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~-G~TVI 862 (916)
T 3pih_A 784 RTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDR-GNTVI 862 (916)
T ss_dssp HHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEE
T ss_pred HHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc-CCEEE
Confidence 3445666655 67999999987 33 444 5799999999999999 345566655 99999
Q ss_pred Ec-------eeCCEEEEE------eCCeEeeecChhhhccChh
Q 024032 228 VS-------NIAEIYKAL------KAGDSKPLDATKRLFSAPG 257 (273)
Q Consensus 228 iv-------~~ad~i~vl------~~G~i~~~g~~~~l~~~~~ 257 (273)
+| ..||+|++| ++|+|++.|+++++++.+.
T Consensus 863 vI~HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~~~~ 905 (916)
T 3pih_A 863 VIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKNPH 905 (916)
T ss_dssp EECCCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHHHHSCTT
T ss_pred EEeCCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHHhCCc
Confidence 99 448999999 8999999999999987653
No 62
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.92 E-value=2.6e-28 Score=223.17 Aligned_cols=188 Identities=12% Similarity=0.065 Sum_probs=136.5
Q ss_pred hhhhhhhccchhhhhhhhHHHHHHHhchhhhccCC------CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEE
Q 024032 29 FDECVKLKLDLPNVSTLTPRLRVLREMERLALIAP------DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITIL 102 (273)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~------~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~a 102 (273)
+..|...-..++++..+..|+.++++.++...... .+.++++||+|+|. .++ |+++||+|++|++++
T Consensus 58 v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~---~~v----L~~vsl~i~~Ge~va 130 (305)
T 2v9p_A 58 VKDCATMVRHYLRAETQALSMPAYIKARCKLATGEGSWKSILTFFNYQNIELITF---INA----LKLWLKGIPKKNCLA 130 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCSSCCTHHHHHHHHHTTCCHHHH---HHH----HHHHHHTCTTCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCcccccCCeEEEEEEEEEcC---hhh----hccceEEecCCCEEE
Confidence 44555666777888999999999988654321111 12488999999985 345 999999999999999
Q ss_pred EEcCCCChHHHHHHHHhhCccCccEEEECCeeCCCCCccEEEEeccchhhhccCCcccccc-cccCC---HHHHHHHHHH
Q 024032 103 LMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYD-SRGFN---YNRVHEGLEE 178 (273)
Q Consensus 103 ivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~e-n~~~~---~~~~~~~l~~ 178 (273)
|+||||||||||+++|+|++ +|+|. ++++|++.++ ..|+++ |..+. .+.+.+.++.
T Consensus 131 IvGpsGsGKSTLl~lL~gl~--~G~I~-------------~~v~q~~~lf-----~~ti~~~ni~~~~~~~~~~~~~i~~ 190 (305)
T 2v9p_A 131 FIGPPNTGKSMLCNSLIHFL--GGSVL-------------SFANHKSHFW-----LASLADTRAALVDDATHACWRYFDT 190 (305)
T ss_dssp EECSSSSSHHHHHHHHHHHH--TCEEE-------------CGGGTTSGGG-----GGGGTTCSCEEEEEECHHHHHHHHH
T ss_pred EECCCCCcHHHHHHHHhhhc--CceEE-------------EEecCccccc-----cccHHHHhhccCccccHHHHHHHHH
Confidence 99999999999999999998 89884 2345665543 236665 53221 1244455555
Q ss_pred -h-----cccCCHHHHHHHHh-cCCCCEEEEcCcCCCCCHH--HHHHHHHhcCCcEEEEceeCCEEEEEeCCeEeeecCh
Q 024032 179 -L-----SSWMSEGVHHNQRC-LRSDDCALMKNDAEIDDLK--SSPKYVLRRVDFAMVVSNIAEIYKALKAGDSKPLDAT 249 (273)
Q Consensus 179 -~-----~~~LSgGqkq~~r~-l~~p~iLlLDEPts~LD~~--~~l~~l~~~~g~tiiiv~~ad~i~vl~~G~i~~~g~~ 249 (273)
+ +..||||||||.|+ +++|+||| |++||+. ..+..+.. .... +..||+| +|++|++++.|++
T Consensus 191 ~L~~gldg~~LSgGqkQRARAll~~p~iLl----Ts~LD~~~~~~i~~ltH--~~~~--~~~aD~i-vl~~G~iv~~g~~ 261 (305)
T 2v9p_A 191 YLRNALDGYPVSIDRKHKAAVQIKAPPLLV----TSNIDVQAEDRYLYLHS--RVQT--FRFEQPC-TDESGEQPFNITD 261 (305)
T ss_dssp TTTGGGGTCCEECCCSSCCCCEECCCCEEE----EESSCSTTCGGGGGGTT--TEEE--EECCCCC-CCC---CCCCCCH
T ss_pred HhHccCCccCcCHHHHHHHHHHhCCCCEEE----ECCCCHHHHHHHHHHhC--CHHH--HHhCCEE-EEeCCEEEEeCCH
Confidence 2 36899999998555 89999999 9999998 34444432 2332 3789999 9999999999999
Q ss_pred hhh
Q 024032 250 KRL 252 (273)
Q Consensus 250 ~~l 252 (273)
+++
T Consensus 262 ~el 264 (305)
T 2v9p_A 262 ADW 264 (305)
T ss_dssp HHH
T ss_pred HHH
Confidence 988
No 63
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.92 E-value=4.8e-28 Score=232.80 Aligned_cols=169 Identities=8% Similarity=-0.022 Sum_probs=123.9
Q ss_pred eeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-Ccc-E-EEECCeeCCCCCccEEEEeccchhhhccCCcccccccc
Q 024032 89 QKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSG-L-VLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSR 165 (273)
Q Consensus 89 ~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G-~-I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en~ 165 (273)
.++||++++|++++|+||||||||||+|+|+|++. ++| + |+++|. .++.+++++|+..+++. ...+|+.+|.
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~----~~~~i~~vpq~~~l~~~-~~~~tv~eni 203 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD----PQQPIFTVPGCISATPI-SDILDAQLPT 203 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC----TTSCSSSCSSCCEEEEC-CSCCCTTCTT
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC----ccCCeeeeccchhhccc-ccccchhhhh
Confidence 36899999999999999999999999999999999 999 9 999982 35668888888754321 2234555542
Q ss_pred cC---------CHHHHHHHHHHh-------cccCCHHHHHHH----H--hcCCCCE----EEEcC-cCCCCCHH-HHHHH
Q 024032 166 GF---------NYNRVHEGLEEL-------SSWMSEGVHHNQ----R--CLRSDDC----ALMKN-DAEIDDLK-SSPKY 217 (273)
Q Consensus 166 ~~---------~~~~~~~~l~~~-------~~~LSgGqkq~~----r--~l~~p~i----LlLDE-Pts~LD~~-~~l~~ 217 (273)
+ ..+.+.++++.+ ..+||||||||. . ++.+|++ ||||| ||++||+. ..+.+
T Consensus 204 -~~~~~~~~~~~~~~~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~~~~l~~ 282 (460)
T 2npi_A 204 -WGQSLTSGATLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDENLAELHH 282 (460)
T ss_dssp -CSCBCBSSCCSSCCBCCEECCCCSSSGGGCHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSSCHHHHH
T ss_pred -cccccccCcchHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChhHHHHHH
Confidence 1 001111122222 357999999976 2 4689999 99999 99999997 55666
Q ss_pred HHhcCCcEEEEc----e----------eCCE-----EEEEe-CCeEeeecChhhhcc--ChhhHHHh-CC
Q 024032 218 VLRRVDFAMVVS----N----------IAEI-----YKALK-AGDSKPLDATKRLFS--APGLRKCS-KI 264 (273)
Q Consensus 218 l~~~~g~tiiiv----~----------~ad~-----i~vl~-~G~i~~~g~~~~l~~--~~~l~~~~-~~ 264 (273)
+.++.+.|+++| . +||+ |++|+ +|+++ .|+++++.+ ...+.++| +.
T Consensus 283 l~~~~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~~~~~~~i~~~f~g~ 351 (460)
T 2npi_A 283 IIEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKRSLQRTSIREYFYGS 351 (460)
T ss_dssp HHHHTTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHhhhhHHHHHHHhCCC
Confidence 666668888887 3 3577 99999 99999 999988742 23455554 53
No 64
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.92 E-value=3.2e-25 Score=227.20 Aligned_cols=180 Identities=17% Similarity=0.185 Sum_probs=120.9
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHh-hCc--------cCc-------c--
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMY-SVL--------SRS-------G-- 126 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~-gl~--------~~~-------G-- 126 (273)
..+++++++. .. |++|||+|++|+++||+|+||||||||+++|+ |.+ ... |
T Consensus 628 ~~L~v~~l~~-------~~----Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~ 696 (972)
T 2r6f_A 628 RWLEVVGARE-------HN----LKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLE 696 (972)
T ss_dssp CEEEEEEECS-------SS----CCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGG
T ss_pred eEEEEecCcc-------cc----cccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeecccc
Confidence 4688888752 13 99999999999999999999999999999854 322 112 3
Q ss_pred ----EEEECCeeCCCC-C-----------------------ccEEEEeccchhhh----------------ccCC-----
Q 024032 127 ----LVLFAQTSSGNS-S-----------------------HTITMYMEEHNVMR----------------SLQS----- 157 (273)
Q Consensus 127 ----~I~i~g~~i~~~-~-----------------------~~i~~v~q~~~~~~----------------~~~~----- 157 (273)
.|.++|.++... + +.++|++|...... .+.|
T Consensus 697 ~~~~~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~ 776 (972)
T 2r6f_A 697 HLDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVY 776 (972)
T ss_dssp GCSEEEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEE
T ss_pred ccceEEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhcccccc
Confidence 477888776321 1 12234433221100 0000
Q ss_pred -----------------------------cccccccccC----C-HHHHHHHHHHhc----------ccCCHHHHHHH--
Q 024032 158 -----------------------------GFCVYDSRGF----N-YNRVHEGLEELS----------SWMSEGVHHNQ-- 191 (273)
Q Consensus 158 -----------------------------~~tv~en~~~----~-~~~~~~~l~~~~----------~~LSgGqkq~~-- 191 (273)
.+|+.++..+ . ..+..+.++.++ .+||||||||+
T Consensus 777 ~~ce~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~~~~~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~L 856 (972)
T 2r6f_A 777 VPCEVCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASIPKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKL 856 (972)
T ss_dssp EECTTTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCSCHHHHHHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHH
T ss_pred ccccccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhcchhHHHHHHHHHHcCCCcccccCchhhCCHHHHHHHHH
Confidence 1122222110 0 122345566655 67999999987
Q ss_pred -Hh-cCC---CCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEE------eCCeEeeec
Q 024032 192 -RC-LRS---DDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKAL------KAGDSKPLD 247 (273)
Q Consensus 192 -r~-l~~---p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl------~~G~i~~~g 247 (273)
++ +++ |++|||||||+|||+. +.++++.++ |.|||+| ..||+|++| ++|+|+..|
T Consensus 857 AraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~-G~TVIvisHdl~~i~~aDrIivL~p~gG~~~G~Iv~~g 935 (972)
T 2r6f_A 857 AAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN-GDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVG 935 (972)
T ss_dssp HHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECCCHHHHTTCSEEEEECSSSTTSCCSEEEEE
T ss_pred HHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEcCCHHHHHhCCEEEEEcCCCCCCCCEEEEec
Confidence 33 444 5999999999999999 345566555 9999999 458999999 789999999
Q ss_pred ChhhhccCh
Q 024032 248 ATKRLFSAP 256 (273)
Q Consensus 248 ~~~~l~~~~ 256 (273)
++++++..+
T Consensus 936 ~~~el~~~~ 944 (972)
T 2r6f_A 936 TPEEVAEVK 944 (972)
T ss_dssp SHHHHHTCT
T ss_pred CHHHHHhCc
Confidence 999998654
No 65
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.91 E-value=3.8e-24 Score=201.30 Aligned_cols=62 Identities=8% Similarity=-0.071 Sum_probs=51.4
Q ss_pred CCHHHHHHHHh----cCCC--CEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEE----e
Q 024032 183 MSEGVHHNQRC----LRSD--DCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKAL----K 239 (273)
Q Consensus 183 LSgGqkq~~r~----l~~p--~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl----~ 239 (273)
||||||||..+ +.+| ++|||||||++||+. +.++++. + |.|||+| ..||++++| +
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~-~~~vi~itH~~~~~~~~d~i~~l~k~~~ 373 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-D-TRQVLVVTHLAQIAARAHHHYKVEKQVE 373 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-T-TSEEEEECSCHHHHTTCSEEEEEEEEEE
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-C-CCEEEEEeCcHHHHhhcCeEEEEEEecc
Confidence 89999998722 6789 999999999999999 3345554 3 8899988 558999999 9
Q ss_pred CCeEeee
Q 024032 240 AGDSKPL 246 (273)
Q Consensus 240 ~G~i~~~ 246 (273)
+|+++..
T Consensus 374 ~G~~~~~ 380 (415)
T 4aby_A 374 DGRTVSH 380 (415)
T ss_dssp TTEEEEE
T ss_pred CCceEEE
Confidence 9998765
No 66
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.90 E-value=3.8e-24 Score=219.87 Aligned_cols=75 Identities=8% Similarity=0.093 Sum_probs=61.9
Q ss_pred ccCCHHHHHHH---Hh-cCC---CCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEE--
Q 024032 181 SWMSEGVHHNQ---RC-LRS---DDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKAL-- 238 (273)
Q Consensus 181 ~~LSgGqkq~~---r~-l~~---p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl-- 238 (273)
.+||||||||+ ++ +++ |++|||||||+|||+. +.++++.++ |.|||+| ..||+|++|
T Consensus 862 ~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~-G~TVIvisHdl~~i~~aDrIivL~p 940 (993)
T 2ygr_A 862 PTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDK-GNTVIVIEHNLDVIKTSDWIIDLGP 940 (993)
T ss_dssp GGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECCCHHHHTTCSEEEEEES
T ss_pred ccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEcCCHHHHHhCCEEEEECC
Confidence 67999999987 33 444 5999999999999999 335566554 9999999 458999999
Q ss_pred ----eCCeEeeecChhhhccCh
Q 024032 239 ----KAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 239 ----~~G~i~~~g~~~~l~~~~ 256 (273)
++|++++.|++++++..+
T Consensus 941 ~gg~~~G~Iv~~G~~~el~~~~ 962 (993)
T 2ygr_A 941 EGGAGGGTVVAQGTPEDVAAVP 962 (993)
T ss_dssp SSTTSCSEEEEEECHHHHHHCT
T ss_pred CcCCCCCEEEEecCHHHHHhCC
Confidence 689999999999997643
No 67
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.86 E-value=6.8e-24 Score=184.40 Aligned_cols=147 Identities=7% Similarity=0.062 Sum_probs=96.7
Q ss_pred ceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeCCC------CCccEEEEeccchhhhccC----
Q 024032 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGN------SSHTITMYMEEHNVMRSLQ---- 156 (273)
Q Consensus 87 ~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i~~------~~~~i~~v~q~~~~~~~~~---- 156 (273)
.|++|||+|++|++++|+||||||||||+++|+|+++ |.|.+ |.++.. .++.+++++|++..|+.+.
T Consensus 12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 88 (218)
T 1z6g_A 12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEFP--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNED 88 (218)
T ss_dssp ----------CCCCEEEECSTTSSHHHHHHHHHHHST--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTTC
T ss_pred cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhCC--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhccc
Confidence 3999999999999999999999999999999999984 99999 776532 2456889999988765431
Q ss_pred --Cccccccc-ccCCHHHHHHHHHHhc-----ccCCHHHHHHHHh---------cCCCCEEEEcCcCCCCCHH--H----
Q 024032 157 --SGFCVYDS-RGFNYNRVHEGLEELS-----SWMSEGVHHNQRC---------LRSDDCALMKNDAEIDDLK--S---- 213 (273)
Q Consensus 157 --~~~tv~en-~~~~~~~~~~~l~~~~-----~~LSgGqkq~~r~---------l~~p~iLlLDEPts~LD~~--~---- 213 (273)
+..++.+| .+.+...+.++++... ..|||||+||..+ +..|++++|||||+++|.. .
T Consensus 89 ~l~~~~~~~~~~g~~~~~i~~~l~~~~~~il~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~ 168 (218)
T 1z6g_A 89 FLEYDNYANNFYGTLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQK 168 (218)
T ss_dssp EEEEEEETTEEEEEEHHHHHHHHHTTCEEEEEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHH
T ss_pred hhhhhhcccccCCCcHHHHHHHHhCCCcEEEEecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHH
Confidence 11233333 2334556666666543 5679999987522 4578999999999999976 2
Q ss_pred HHHHHHhcCCcEEEEc--eeCCEEEEEeC
Q 024032 214 SPKYVLRRVDFAMVVS--NIAEIYKALKA 240 (273)
Q Consensus 214 ~l~~l~~~~g~tiiiv--~~ad~i~vl~~ 240 (273)
.+..+.+ +.| ++ ..+|.|+++++
T Consensus 169 ~l~~~~~--~~~--~~h~~~~d~iiv~~~ 193 (218)
T 1z6g_A 169 RMEQLNI--ELH--EANLLNFNLSIINDD 193 (218)
T ss_dssp HHHHHHH--HHH--HHTTSCCSEEEECSS
T ss_pred HHHHHHH--HHH--hhcccCCCEEEECCC
Confidence 2333323 334 22 56899888764
No 68
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.85 E-value=5.8e-24 Score=184.37 Aligned_cols=142 Identities=13% Similarity=0.054 Sum_probs=83.3
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECC--eeCCCCCccEEEEeccchhhhcc-CCcccccc
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQ--TSSGNSSHTITMYMEEHNVMRSL-QSGFCVYD 163 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g--~~i~~~~~~i~~v~q~~~~~~~~-~~~~tv~e 163 (273)
|+++ ++|++++|+||||||||||+++|+|+ + ++|+|.... .+....++.+++++|++. ..+ .+..++++
T Consensus 16 l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~~--enl~~~~~~~~~ 88 (208)
T 3b85_A 16 VDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTLN--EKIDPYLRPLHD 88 (208)
T ss_dssp HHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC--------CTTTHHHHH
T ss_pred HHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCHH--HHHHHHHHHHHH
Confidence 8885 89999999999999999999999999 9 999994311 111234567899999761 111 11111111
Q ss_pred cc-c-CCHHHHHHHHHHhcccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHHHHHHHHHh-cCCcEEEEc----eeC
Q 024032 164 SR-G-FNYNRVHEGLEELSSWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLKSSPKYVLR-RVDFAMVVS----NIA 232 (273)
Q Consensus 164 n~-~-~~~~~~~~~l~~~~~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~~~l~~l~~-~~g~tiiiv----~~a 232 (273)
.. . ...+.+.+.++. +.|||||. |+ +.+|++|||||||++ -.......+.+ +.|.||| + ..+
T Consensus 89 ~~~~~~~~~~~~~~l~~-----glGq~qrv~lAraL~~~p~lllLDEPts~-~~~~l~~~l~~l~~g~tii-vtHd~~~~ 161 (208)
T 3b85_A 89 ALRDMVEPEVIPKLMEA-----GIVEVAPLAYMRGRTLNDAFVILDEAQNT-TPAQMKMFLTRLGFGSKMV-VTGDITQV 161 (208)
T ss_dssp HHTTTSCTTHHHHHHHT-----TSEEEEEGGGGTTCCBCSEEEEECSGGGC-CHHHHHHHHTTBCTTCEEE-EEEC----
T ss_pred HHHHhccHHHHHHHHHh-----CCchHHHHHHHHHHhcCCCEEEEeCCccc-cHHHHHHHHHHhcCCCEEE-EECCHHHH
Confidence 10 1 123345556654 23999976 33 789999999999999 33332222221 2388999 7 334
Q ss_pred CEEEEEeCCeE
Q 024032 233 EIYKALKAGDS 243 (273)
Q Consensus 233 d~i~vl~~G~i 243 (273)
++....++|..
T Consensus 162 ~~~~~~~~G~~ 172 (208)
T 3b85_A 162 DLPGGQKSGLR 172 (208)
T ss_dssp --------CCH
T ss_pred hCcCCCCCcHH
Confidence 55555566654
No 69
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.85 E-value=3.7e-21 Score=179.69 Aligned_cols=64 Identities=14% Similarity=-0.002 Sum_probs=51.6
Q ss_pred ccCCHHHHHHHH---h-c------CCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEE
Q 024032 181 SWMSEGVHHNQR---C-L------RSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKA 237 (273)
Q Consensus 181 ~~LSgGqkq~~r---~-l------~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~v 237 (273)
.+|||||+||.. + + .+|++|||||||++||+. +.++.+.++ |.|||+| ..||++++
T Consensus 278 ~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~-g~tvi~itH~~~~~~~~d~~~~ 356 (365)
T 3qf7_A 278 RGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERL-NKVIVFITHDREFSEAFDRKLR 356 (365)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGS-SSEEEEEESCHHHHTTCSCEEE
T ss_pred hhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC-CCEEEEEecchHHHHhCCEEEE
Confidence 469999999862 2 2 699999999999999999 234455444 8999998 45899999
Q ss_pred EeCCeEee
Q 024032 238 LKAGDSKP 245 (273)
Q Consensus 238 l~~G~i~~ 245 (273)
|++|+++.
T Consensus 357 l~~G~i~~ 364 (365)
T 3qf7_A 357 ITGGVVVN 364 (365)
T ss_dssp EETTEEC-
T ss_pred EECCEEEe
Confidence 99999874
No 70
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.83 E-value=6.8e-23 Score=194.42 Aligned_cols=116 Identities=14% Similarity=0.111 Sum_probs=91.6
Q ss_pred eeeeeeEEcCCc--------------------EEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEEEEe
Q 024032 88 IQKGGMDIPPVI--------------------TILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYM 146 (273)
Q Consensus 88 L~~is~~i~~Ge--------------------~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~~v~ 146 (273)
|++|||+|++|+ ++||+||||||||||+|+|+|+++ ++|+|.++|.++.. .++++
T Consensus 39 l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~----~~~v~ 114 (413)
T 1tq4_A 39 LNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTM----ERHPY 114 (413)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----C----CCEEE
T ss_pred hhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecce----eEEec
Confidence 999999999999 999999999999999999999999 99999999987641 26677
Q ss_pred ccchhhhccCCcccccccccCC--HHHHHHHHHHhc-------ccCCHH--HHHHH---Hh-cC----------CCCEEE
Q 024032 147 EEHNVMRSLQSGFCVYDSRGFN--YNRVHEGLEELS-------SWMSEG--VHHNQ---RC-LR----------SDDCAL 201 (273)
Q Consensus 147 q~~~~~~~~~~~~tv~en~~~~--~~~~~~~l~~~~-------~~LSgG--qkq~~---r~-l~----------~p~iLl 201 (273)
|++. +..+|++||.++. ...+.+.++.++ ..||+| |+|+. ++ ++ +|++++
T Consensus 115 q~~~-----~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~~lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlll 189 (413)
T 1tq4_A 115 KHPN-----IPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDI 189 (413)
T ss_dssp ECSS-----CTTEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEEEESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHH
T ss_pred cccc-----cCCeeehHhhcccchHHHHHHHHHHcCCCccCCeEEeCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccc
Confidence 7642 3456889986643 234667777665 238999 98875 22 34 899999
Q ss_pred EcCcCCCCCHH
Q 024032 202 MKNDAEIDDLK 212 (273)
Q Consensus 202 LDEPts~LD~~ 212 (273)
|||||+|||+.
T Consensus 190 LDEPtsgLD~~ 200 (413)
T 1tq4_A 190 TNEADGEPQTF 200 (413)
T ss_dssp HHHHTTCCTTC
T ss_pred cCcccccCCHH
Confidence 99999999998
No 71
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.82 E-value=4.9e-22 Score=166.20 Aligned_cols=123 Identities=15% Similarity=0.132 Sum_probs=74.5
Q ss_pred eeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeCCCCCccEEEEeccchhhhccCCcccccccccCCH
Q 024032 90 KGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNY 169 (273)
Q Consensus 90 ~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en~~~~~ 169 (273)
++||++++||+++|+||||||||||+|++.+-.. .+.+..+ .++++|++... .+..++++.. .
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~-----~~~~d~~------~g~~~~~~~~~---~~~~~~~~~~---~ 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTE-----VISSDFC------RGLMSDDENDQ---TVTGAAFDVL---H 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGG-----EEEHHHH------HHHHCSSTTCG---GGHHHHHHHH---H
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCe-----EEccHHH------HHHhcCcccch---hhHHHHHHHH---H
Confidence 5899999999999999999999999998653211 1111000 13344443210 1111111110 0
Q ss_pred HHHHHHHHHhc--------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------------------HHH----
Q 024032 170 NRVHEGLEELS--------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------------------SSP---- 215 (273)
Q Consensus 170 ~~~~~~l~~~~--------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------------------~~l---- 215 (273)
......+ ..+ ...|+|||||. ++ +.+|++|+|||||++||+. ..+
T Consensus 64 ~~~~~~~-~~g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l 142 (171)
T 4gp7_A 64 YIVSKRL-QLGKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSI 142 (171)
T ss_dssp HHHHHHH-HTTCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHS
T ss_pred HHHHHHH-hCCCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhh
Confidence 0111111 122 45689999986 33 6899999999999999988 222
Q ss_pred HHHHhcCCcEEEEcee
Q 024032 216 KYVLRRVDFAMVVSNI 231 (273)
Q Consensus 216 ~~l~~~~g~tiiiv~~ 231 (273)
+.+.++ |.|+|++.|
T Consensus 143 ~~l~~~-g~tvi~vtH 157 (171)
T 4gp7_A 143 KGLQRE-GFRYVYILN 157 (171)
T ss_dssp TTHHHH-TCSEEEEEC
T ss_pred hhHHhc-CCcEEEEeC
Confidence 234555 999999843
No 72
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.82 E-value=1.1e-20 Score=173.28 Aligned_cols=62 Identities=15% Similarity=0.060 Sum_probs=47.2
Q ss_pred ccCCHHHHHHH---Hhc-----CCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEE--EE
Q 024032 181 SWMSEGVHHNQ---RCL-----RSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIY--KA 237 (273)
Q Consensus 181 ~~LSgGqkq~~---r~l-----~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i--~v 237 (273)
..||+||||+. +++ .+|++|||||||++||+. +.++++. + +.|+|++ ..||++ ++
T Consensus 218 ~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~-~~~vi~~tH~~~~~~~~d~~~~v~ 295 (322)
T 1e69_A 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-K-HTQFIVITHNKIVMEAADLLHGVT 295 (322)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-T-TSEEEEECCCTTGGGGCSEEEEEE
T ss_pred hhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CCeEEEEECCHHHHhhCceEEEEE
Confidence 57999999986 322 678999999999999999 2344443 3 7888888 458986 77
Q ss_pred EeCCeEe
Q 024032 238 LKAGDSK 244 (273)
Q Consensus 238 l~~G~i~ 244 (273)
|.+|...
T Consensus 296 ~~~g~s~ 302 (322)
T 1e69_A 296 MVNGVSA 302 (322)
T ss_dssp ESSSCEE
T ss_pred EeCCEEE
Confidence 8887653
No 73
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.82 E-value=4.4e-21 Score=172.34 Aligned_cols=124 Identities=17% Similarity=0.143 Sum_probs=79.3
Q ss_pred EEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC--CCccEEEEeccchhhhccCCcccccccccCC--------
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN--SSHTITMYMEEHNVMRSLQSGFCVYDSRGFN-------- 168 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~--~~~~i~~v~q~~~~~~~~~~~~tv~en~~~~-------- 168 (273)
.+||+||||||||||+|+|+|+.. ++|+|.++|+++.. .++.+++++|+..+ ...+||.||.++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~----~~~ltv~d~~~~g~~~~~~~~ 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGV----KMKLTVIDTPGFGDQINNENC 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC--------CCEEEEECCCC--CCSBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCC----cCCceEEechhhhhhcccHHH
Confidence 579999999999999999999999 99999999988753 45679999998775 4456999985431
Q ss_pred HHHHHHH-----HHHhcccCCHHHHHHHHh-cCCCCEEEEcCcCCCCCHH--HHHHHHHhcCCcEEEEc
Q 024032 169 YNRVHEG-----LEELSSWMSEGVHHNQRC-LRSDDCALMKNDAEIDDLK--SSPKYVLRRVDFAMVVS 229 (273)
Q Consensus 169 ~~~~~~~-----l~~~~~~LSgGqkq~~r~-l~~p~iLlLDEPts~LD~~--~~l~~l~~~~g~tiiiv 229 (273)
.+.+.+. .+....+|||||+||... -..+.+++||||+++||+. +.++.+.+. .++|++
T Consensus 80 ~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~--~~vI~V 146 (270)
T 3sop_A 80 WEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV--VNIIPV 146 (270)
T ss_dssp SHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT--SEEEEE
T ss_pred HHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc--CcEEEE
Confidence 1222222 223337899999887633 1245599999999999999 556777654 666666
No 74
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.82 E-value=1.2e-21 Score=178.75 Aligned_cols=149 Identities=9% Similarity=0.051 Sum_probs=106.5
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCC-----------CccEEEEeccch-hhhc
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNS-----------SHTITMYMEEHN-VMRS 154 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~-----------~~~i~~v~q~~~-~~~~ 154 (273)
+.++||++++|++++|+||||||||||++.|+|+++ ++|+|.+.|.++... +..+++++|++. .++
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~- 168 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA- 168 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCH-
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCH-
Confidence 467899999999999999999999999999999999 999999999887531 235899999876 433
Q ss_pred cCCcccccccccCCHHH-H-HHHHHHh---------cccCCHHHHHHH---Hh-cCCCC--EEEEcCcCCCCCHHHHHHH
Q 024032 155 LQSGFCVYDSRGFNYNR-V-HEGLEEL---------SSWMSEGVHHNQ---RC-LRSDD--CALMKNDAEIDDLKSSPKY 217 (273)
Q Consensus 155 ~~~~~tv~en~~~~~~~-~-~~~l~~~---------~~~LSgGqkq~~---r~-l~~p~--iLlLDEPts~LD~~~~l~~ 217 (273)
..++++|....... . ...++.+ ..+|| +||. |+ +.+|+ +|+|| ||+|||+..+++.
T Consensus 169 ---~~~v~e~l~~~~~~~~d~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~~~ 241 (302)
T 3b9q_A 169 ---ATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQARE 241 (302)
T ss_dssp ---HHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHHHH
T ss_pred ---HHHHHHHHHHHHHcCCcchHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHHHH
Confidence 23666652210000 0 0001111 14577 4554 23 57899 99999 9999999988888
Q ss_pred HHhcCCcEEEEcee-----------------CCEEEEEeCCeEe
Q 024032 218 VLRRVDFAMVVSNI-----------------AEIYKALKAGDSK 244 (273)
Q Consensus 218 l~~~~g~tiiiv~~-----------------ad~i~vl~~G~i~ 244 (273)
+.++.|.|+|++++ ...|.++..|+.+
T Consensus 242 ~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~ 285 (302)
T 3b9q_A 242 FNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 285 (302)
T ss_dssp HHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred HHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCCh
Confidence 87666899888832 3577888888753
No 75
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.81 E-value=3.1e-22 Score=171.90 Aligned_cols=146 Identities=11% Similarity=-0.025 Sum_probs=90.5
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCC-CCCccEEEEeccchhhhccCCccccccc-
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSG-NSSHTITMYMEEHNVMRSLQSGFCVYDS- 164 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~-~~~~~i~~v~q~~~~~~~~~~~~tv~en- 164 (273)
++| .+|++|++++|+||||||||||+|+|+|+++ ..+.+.+.+.+.. ..++.+++++|++..++.+ ++.++
T Consensus 12 ~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~----~~~~~l 85 (207)
T 1znw_A 12 ARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQL----IDQGEL 85 (207)
T ss_dssp ---------CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHHHHH----HHTTCE
T ss_pred CCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEecCHHHHHHH----HhcCCc
Confidence 888 7999999999999999999999999999986 3333222222211 2345688999998776543 33332
Q ss_pred ------------ccCCHHHHHHHHHHhc-----ccCCHHHHHHHH------h-cCCCCEEEEcCcCCCC----CHH----
Q 024032 165 ------------RGFNYNRVHEGLEELS-----SWMSEGVHHNQR------C-LRSDDCALMKNDAEID----DLK---- 212 (273)
Q Consensus 165 ------------~~~~~~~~~~~l~~~~-----~~LSgGqkq~~r------~-l~~p~iLlLDEPts~L----D~~---- 212 (273)
.+.+...+.+.++... ..+.|.+.++.+ + +.+|++++|||||+++ |+.
T Consensus 86 ~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS~l~~~p~~~~LDep~~~l~~~~d~~~~~~ 165 (207)
T 1znw_A 86 LEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVTVFLAPPSWQDLQARLIGRGTETADVIQRR 165 (207)
T ss_dssp EEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEEEEEECSCHHHHHHHHHTTSCSCHHHHHHH
T ss_pred eeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEEEEEECCCHHHHHHHHHhcCCCCHHHHHHH
Confidence 1234455555555531 234555544332 1 5699999999999998 443
Q ss_pred --HHHHHHHhcCCcEEEEc--------eeCCEEEEEe
Q 024032 213 --SSPKYVLRRVDFAMVVS--------NIAEIYKALK 239 (273)
Q Consensus 213 --~~l~~l~~~~g~tiiiv--------~~ad~i~vl~ 239 (273)
+.++++.++.|.|++++ .+||+|++|.
T Consensus 166 l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 166 LDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp HHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred HHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 33456654458899988 4578888874
No 76
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.80 E-value=2.3e-22 Score=192.27 Aligned_cols=174 Identities=8% Similarity=-0.063 Sum_probs=124.1
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCe---eCCC---
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQT---SSGN--- 137 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~---~i~~--- 137 (273)
..++++++++.|.. +..+ |+++ |+|.+|++++|+||||||||||+++|+|+.+ +.|.|.+.|+ ++.+
T Consensus 130 ~~l~~~~v~~~~~t-g~~v----ld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~ 203 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT-GVRA----INAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIE 203 (438)
T ss_dssp CTTTSCCCCSBCCC-SCHH----HHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHH
T ss_pred CceEEeccceecCC-CceE----Eeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHH
Confidence 57889999998853 3345 9999 9999999999999999999999999999999 9999999998 4432
Q ss_pred -------CCccEEEEecc-chhhhccCCcccccccccCCHHHHHHHHHHh------cccCCHHHHHHHH-hcCCCCEEEE
Q 024032 138 -------SSHTITMYMEE-HNVMRSLQSGFCVYDSRGFNYNRVHEGLEEL------SSWMSEGVHHNQR-CLRSDDCALM 202 (273)
Q Consensus 138 -------~~~~i~~v~q~-~~~~~~~~~~~tv~en~~~~~~~~~~~l~~~------~~~LSgGqkq~~r-~l~~p~iLlL 202 (273)
+++.+++++|+ ...++ .+++.+|.....+.....-+.+ ...||+|| ||.. ++.+|++
T Consensus 204 ~~~~~~~l~r~i~~v~q~~~~~~~----~~~v~~~~~~~ae~~~~~~~~v~~~ld~l~~lS~g~-qrvslAl~~p~~--- 275 (438)
T 2dpy_A 204 NILGPDGRARSVVIAAPADVSPLL----RMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQ-REIALAIGEPPA--- 275 (438)
T ss_dssp TTTHHHHHHTEEEEEECTTSCHHH----HHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHHHHH-HHHHHHTTCCCC---
T ss_pred hhccccccCceEEEEECCCCCHHH----HHHHHHHHHHHHHHHHhCCCCHHHHHHhHHHHHHHH-HHHHHHhCCCcc---
Confidence 34678999985 33333 3366665322111110000000 15689999 5553 3788888
Q ss_pred cCcCCCCCHH--HHHHHH----Hh---cCCc-----EEEEc------eeCCEEEEEeCCeEeeecChhhhccC
Q 024032 203 KNDAEIDDLK--SSPKYV----LR---RVDF-----AMVVS------NIAEIYKALKAGDSKPLDATKRLFSA 255 (273)
Q Consensus 203 DEPts~LD~~--~~l~~l----~~---~~g~-----tiiiv------~~ad~i~vl~~G~i~~~g~~~~l~~~ 255 (273)
|+|||+. ..+.++ .+ +.|. ||+++ .+||++++|.+|+|+..+++.++...
T Consensus 276 ---t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~~~iad~v~~l~dG~Ivl~~~~~~~~~~ 345 (438)
T 2dpy_A 276 ---TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHY 345 (438)
T ss_dssp ---SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSCCHHHHHHHHHSSEEEEECHHHHHTTCS
T ss_pred ---cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCccchhhceEEEEeCcEEEEeCCHHHccCC
Confidence 9999999 233332 22 1253 77777 33689999999999999998887653
No 77
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.79 E-value=1e-20 Score=176.47 Aligned_cols=147 Identities=10% Similarity=0.075 Sum_probs=106.4
Q ss_pred eeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCC-----------CccEEEEeccch-hhhcc
Q 024032 89 QKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNS-----------SHTITMYMEEHN-VMRSL 155 (273)
Q Consensus 89 ~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~-----------~~~i~~v~q~~~-~~~~~ 155 (273)
..+||++++|++++|+||||||||||++.|+|+++ ++|+|.+.|.++... +..+++++|++. .++
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p-- 225 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA-- 225 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCH--
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccCh--
Confidence 56899999999999999999999999999999999 999999999887431 246899999876 433
Q ss_pred CCcccccccccCCHHH-H-HHHHH---------HhcccCCHHHHHHH---Hh-cCCCC--EEEEcCcCCCCCHHHHHHHH
Q 024032 156 QSGFCVYDSRGFNYNR-V-HEGLE---------ELSSWMSEGVHHNQ---RC-LRSDD--CALMKNDAEIDDLKSSPKYV 218 (273)
Q Consensus 156 ~~~~tv~en~~~~~~~-~-~~~l~---------~~~~~LSgGqkq~~---r~-l~~p~--iLlLDEPts~LD~~~~l~~l 218 (273)
..++++|....... . ...++ ....+|| +||. |+ +.+|+ +|+|| ||+|||+...++.+
T Consensus 226 --~~tv~e~l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~~~~ 299 (359)
T 2og2_A 226 --ATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQAREF 299 (359)
T ss_dssp --HHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHHHHH
T ss_pred --hhhHHHHHHHHHhCCCHHHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHHHHH
Confidence 23555552110000 0 00011 1114567 4554 33 68999 99999 99999999888888
Q ss_pred HhcCCcEEEEcee-----------------CCEEEEEeCCeE
Q 024032 219 LRRVDFAMVVSNI-----------------AEIYKALKAGDS 243 (273)
Q Consensus 219 ~~~~g~tiiiv~~-----------------ad~i~vl~~G~i 243 (273)
.++.|.|+|++++ ...|.++..|+.
T Consensus 300 ~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 300 NEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp HHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred HHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 7666899888833 357888888864
No 78
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.79 E-value=1.8e-20 Score=158.39 Aligned_cols=118 Identities=11% Similarity=0.097 Sum_probs=75.2
Q ss_pred EEEEEcCCCChHHHHHHHHhhCccCccEEEECCee---CC--CCCccEEEEeccchhhhccCCcccccccccCCHHHHHH
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTS---SG--NSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHE 174 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~---i~--~~~~~i~~v~q~~~~~~~~~~~~tv~en~~~~~~~~~~ 174 (273)
+++|+||||||||||+++|+|++. |.++|.+ .. ..++++++++|+......+ ........+ .
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~----i~~~g~~~~~~~~~~~~~~ig~~~~~~~~~~~~------~~~~~~~~~---~ 68 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG----KRAIGFWTEEVRDPETKKRTGFRIITTEGKKKI------FSSKFFTSK---K 68 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG----GGEEEEEEEEEC------CCEEEEEETTCCEEE------EEETTCCCS---S
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC----CcCCCEEhhhhccccccceeEEEeecCcHHHHH------HHhhcCCcc---c
Confidence 689999999999999999999986 2233332 22 3456789998875211111 000011000 0
Q ss_pred HHHHhcccCCHHHHHHH---H------hcCCCCEEEEcC--cCCCCCHH--HHHHHHHhcCCcEEEEce
Q 024032 175 GLEELSSWMSEGVHHNQ---R------CLRSDDCALMKN--DAEIDDLK--SSPKYVLRRVDFAMVVSN 230 (273)
Q Consensus 175 ~l~~~~~~LSgGqkq~~---r------~l~~p~iLlLDE--Pts~LD~~--~~l~~l~~~~g~tiiiv~ 230 (273)
.+......||||||||. + ++.+|++||||| ||++||+. +.+.++.++.+.|+|++.
T Consensus 69 ~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~ 137 (178)
T 1ye8_A 69 LVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATI 137 (178)
T ss_dssp EETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEEC
T ss_pred cccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEE
Confidence 11222367999999975 4 368999999999 99999998 445555445577677773
No 79
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.78 E-value=3e-21 Score=176.86 Aligned_cols=124 Identities=11% Similarity=0.052 Sum_probs=95.9
Q ss_pred CCCceEEEEEEEEeecCCeeeeccceeeeeeE-----------------------EcCCcEEEEEcCCCChHHHHHHHHh
Q 024032 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMD-----------------------IPPVITILLMGFSGSGKSSLVNLMY 119 (273)
Q Consensus 63 ~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~-----------------------i~~Ge~~aivGpnGsGKSTLl~ll~ 119 (273)
....|++++|++.|. ++ +++++|. +++|+++||+||||||||||+++|+
T Consensus 40 ~~~~i~~~~v~~~y~----p~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~ 111 (312)
T 3aez_A 40 LGEQIDLLEVEEVYL----PL----ARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQ 111 (312)
T ss_dssp TTCCCCHHHHHHTHH----HH----HHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHH
T ss_pred CCCeEEeeehhhhhh----hH----HHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHH
Confidence 355789999999984 33 6666654 8999999999999999999999999
Q ss_pred hCcc-CccEEEECCeeCCCCCccEEEEeccchhhhccCCccccccccc----------CCHHHHHHHHHHhc--------
Q 024032 120 SVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRG----------FNYNRVHEGLEELS-------- 180 (273)
Q Consensus 120 gl~~-~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en~~----------~~~~~~~~~l~~~~-------- 180 (273)
|+++ ..|. +.+++++|+..+++ . |+.+|.. .+.+.+.+.++.++
T Consensus 112 gll~~~~G~------------~~v~~v~qd~~~~~----~-t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~~~~~~~~~ 174 (312)
T 3aez_A 112 ALLARWDHH------------PRVDLVTTDGFLYP----N-AELQRRNLMHRKGFPESYNRRALMRFVTSVKSGSDYACA 174 (312)
T ss_dssp HHHHTSTTC------------CCEEEEEGGGGBCC----H-HHHHHTTCTTCTTSGGGBCHHHHHHHHHHHHTTCSCEEE
T ss_pred hhccccCCC------------CeEEEEecCccCCc----c-cHHHHHHHHHhcCCChHHHHHHHHHHHHHhCCCcccCCc
Confidence 9998 6563 45889999877432 2 6666522 23456667777665
Q ss_pred ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCH
Q 024032 181 SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDL 211 (273)
Q Consensus 181 ~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~ 211 (273)
..|||||+||. ++ +.+|+|||||||++.+|+
T Consensus 175 ~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 175 PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred ccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 56999998875 23 789999999999999985
No 80
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.77 E-value=5.2e-20 Score=179.23 Aligned_cols=144 Identities=8% Similarity=0.002 Sum_probs=103.0
Q ss_pred ceeeeee-EEcCCcEEEEEcCCCChHHHHHHH--HhhCcc-CccEEEECCeeCCC----CCccEEEEeccchhhhccCCc
Q 024032 87 GIQKGGM-DIPPVITILLMGFSGSGKSSLVNL--MYSVLS-RSGLVLFAQTSSGN----SSHTITMYMEEHNVMRSLQSG 158 (273)
Q Consensus 87 ~L~~is~-~i~~Ge~~aivGpnGsGKSTLl~l--l~gl~~-~~G~I~i~g~~i~~----~~~~i~~v~q~~~~~~~~~~~ 158 (273)
+|++++| .|++|++++|+||||||||||+++ ++|+++ .+|.|+++|++... .++.+++++|++..... ++.
T Consensus 27 ~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~-l~~ 105 (525)
T 1tf7_A 27 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGK-LFI 105 (525)
T ss_dssp THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTS-EEE
T ss_pred hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCc-EEE
Confidence 3999999 999999999999999999999999 789999 99999999987431 34567889887653211 111
Q ss_pred ccccccc----cCCHHHHHHHHHHhcccCCHHHHHHHHhcCCCCEEEEcCcCCC-----CCHH------HHHHHHHhcCC
Q 024032 159 FCVYDSR----GFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEI-----DDLK------SSPKYVLRRVD 223 (273)
Q Consensus 159 ~tv~en~----~~~~~~~~~~l~~~~~~LSgGqkq~~r~l~~p~iLlLDEPts~-----LD~~------~~l~~l~~~~g 223 (273)
.++.+.. .+..-.+.+.++.....||+|| |++++|||||+. ||+. ++++.++++ |
T Consensus 106 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~g~---------~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~-g 175 (525)
T 1tf7_A 106 LDASPDPEGQEVVGGFDLSALIERINYAIQKYR---------ARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQI-G 175 (525)
T ss_dssp EECCCCSSCCSCCSSHHHHHHHHHHHHHHHHHT---------CSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHH-T
T ss_pred EecCcccchhhhhcccCHHHHHHHHHHHHHHcC---------CCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHC-C
Confidence 1221110 0111223344555556677775 789999999985 5776 345566655 9
Q ss_pred cEEEEc-----ee------------CCEEEEEeCC
Q 024032 224 FAMVVS-----NI------------AEIYKALKAG 241 (273)
Q Consensus 224 ~tiiiv-----~~------------ad~i~vl~~G 241 (273)
+|||++ .. ||+|++|++|
T Consensus 176 ~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~ 210 (525)
T 1tf7_A 176 ATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNV 210 (525)
T ss_dssp CEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEE
T ss_pred CEEEEEecCCCCccccccccceeeeeeEEEEEEEE
Confidence 999999 22 8999999984
No 81
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.75 E-value=4.2e-19 Score=184.60 Aligned_cols=154 Identities=13% Similarity=0.052 Sum_probs=97.5
Q ss_pred CceEEEE-----EEEEeecCCeeeeccceeeeeeEEcC-------CcEEEEEcCCCChHHHHHHHHhhCccCccEEEECC
Q 024032 65 GLNELRH-----KFLSYRSGDFWIPIGGIQKGGMDIPP-------VITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQ 132 (273)
Q Consensus 65 ~~i~~~~-----v~~~y~~g~~~v~~~~L~~is~~i~~-------Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g 132 (273)
..+++++ +++.|. ++..+ +++++|++++ |++++|+||||||||||||+| |++..
T Consensus 749 ~~l~i~~~rHP~l~~~~~-~~~~v----~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~-------- 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFF-GDDFI----PNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV-------- 814 (1022)
T ss_dssp CCEEEEEECCCC-------CCCCC----CEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH--------
T ss_pred ceEEEEeccccEEEEEec-CCceE----eeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH--------
Confidence 4689999 988884 34456 9999999987 999999999999999999999 98651
Q ss_pred eeCCCCCccEE-EEeccchhhhccCCcccccccc----cCCHHHHHHHHHHhcccCCHHHHHHH--H-hcCCCCEEEEcC
Q 024032 133 TSSGNSSHTIT-MYMEEHNVMRSLQSGFCVYDSR----GFNYNRVHEGLEELSSWMSEGVHHNQ--R-CLRSDDCALMKN 204 (273)
Q Consensus 133 ~~i~~~~~~i~-~v~q~~~~~~~~~~~~tv~en~----~~~~~~~~~~l~~~~~~LSgGqkq~~--r-~l~~p~iLlLDE 204 (273)
..++| +|+|+... +++.|+. +... .+..-.+++|+++++.. + .+.+|+++||||
T Consensus 815 ------~aqiG~~Vpq~~~~-------l~v~d~I~~rig~~d-----~~~~~~stf~~em~~~a~al~la~~~sLlLLDE 876 (1022)
T 2o8b_B 815 ------MAQMGCYVPAEVCR-------LTPIDRVFTRLGASD-----RIMSGESTFFVELSETASILMHATAHSLVLVDE 876 (1022)
T ss_dssp ------HHTTTCCEESSEEE-------ECCCSBEEEECC--------------CHHHHHHHHHHHHHHHCCTTCEEEEEC
T ss_pred ------HhheeEEeccCcCC-------CCHHHHHHHHcCCHH-----HHhhchhhhHHHHHHHHHHHHhCCCCcEEEEEC
Confidence 12234 67776532 2455542 2111 11111256778876633 2 278999999999
Q ss_pred cCCCCCHHH-------HHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEe--eecChhh
Q 024032 205 DAEIDDLKS-------SPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSK--PLDATKR 251 (273)
Q Consensus 205 Pts~LD~~~-------~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~--~~g~~~~ 251 (273)
|++|+|+.. .++.+.++.|.++|++ ..+|++.++ +|++. ..|.+++
T Consensus 877 p~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~~~~~~~~~~ 939 (1022)
T 2o8b_B 877 LGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMACMVENECED 939 (1022)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEEEC-------
T ss_pred CCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEEEEEecCccc
Confidence 999999883 3455665448888888 346888776 58877 4454443
No 82
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.75 E-value=4.9e-20 Score=169.96 Aligned_cols=117 Identities=9% Similarity=0.131 Sum_probs=88.4
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC---CCccEEEEeccchhhhccCCcccccc
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---SSHTITMYMEEHNVMRSLQSGFCVYD 163 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---~~~~i~~v~q~~~~~~~~~~~~tv~e 163 (273)
+++++|.+++|++++|+||||||||||+++|+|+++ ++|.|.++|.+... .++.++++.
T Consensus 161 l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~----------------- 223 (330)
T 2pt7_A 161 ISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFF----------------- 223 (330)
T ss_dssp HHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEEC-----------------
T ss_pred HhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEe-----------------
Confidence 899999999999999999999999999999999999 99999999865211 112222111
Q ss_pred cccCCHHHHHHHHHHhcccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHHHHHHHHHhcCCcEEEEc-------eeC
Q 024032 164 SRGFNYNRVHEGLEELSSWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVS-------NIA 232 (273)
Q Consensus 164 n~~~~~~~~~~~l~~~~~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~~~l~~l~~~~g~tiiiv-------~~a 232 (273)
+ |||+|+. ++ ..+|++|||||||+. ...+.++.+... +.|++++ ..+
T Consensus 224 ----------------g----gg~~~r~~la~aL~~~p~ilildE~~~~-e~~~~l~~~~~g-~~tvi~t~H~~~~~~~~ 281 (330)
T 2pt7_A 224 ----------------G----GNITSADCLKSCLRMRPDRIILGELRSS-EAYDFYNVLCSG-HKGTLTTLHAGSSEEAF 281 (330)
T ss_dssp ----------------B----TTBCHHHHHHHHTTSCCSEEEECCCCST-HHHHHHHHHHTT-CCCEEEEEECSSHHHHH
T ss_pred ----------------C----CChhHHHHHHHHhhhCCCEEEEcCCChH-HHHHHHHHHhcC-CCEEEEEEcccHHHHHh
Confidence 0 7888875 33 679999999999983 233566666542 3467777 346
Q ss_pred CEEEEEeCCeE
Q 024032 233 EIYKALKAGDS 243 (273)
Q Consensus 233 d~i~vl~~G~i 243 (273)
||+++|.+|..
T Consensus 282 dri~~l~~g~~ 292 (330)
T 2pt7_A 282 IRLANMSSSNS 292 (330)
T ss_dssp HHHHHHHHTSG
T ss_pred hhheehhcCCc
Confidence 89999988864
No 83
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.74 E-value=7.5e-19 Score=154.58 Aligned_cols=129 Identities=12% Similarity=0.117 Sum_probs=80.9
Q ss_pred CCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeCCCCCccEEEEeccchhhhccCCc
Q 024032 79 GDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSG 158 (273)
Q Consensus 79 g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~ 158 (273)
+++++ |+++||++++|+++||+||||||||||+++|+|++ |.+.++ ..++.+++++|+. .+ ..
T Consensus 10 ~~~~~----l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l---G~~~~~-----~~~~~i~~v~~d~-~~----~~ 72 (245)
T 2jeo_A 10 GVDLG----TENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL---GQNEVE-----QRQRKVVILSQDR-FY----KV 72 (245)
T ss_dssp -----------------CCSEEEEEECSTTSSHHHHHHHHHHHH---TGGGSC-----GGGCSEEEEEGGG-GB----CC
T ss_pred CCcee----ecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh---chhccc-----ccCCceEEEeCCc-Cc----cc
Confidence 45556 99999999999999999999999999999999976 444343 2456788999884 32 23
Q ss_pred cccccc------------c-cCCHHHHHHHHHHhc-------ccCCHHHHHHH--Hh-cCCCCEEEEcCcCCCCCHHHHH
Q 024032 159 FCVYDS------------R-GFNYNRVHEGLEELS-------SWMSEGVHHNQ--RC-LRSDDCALMKNDAEIDDLKSSP 215 (273)
Q Consensus 159 ~tv~en------------~-~~~~~~~~~~l~~~~-------~~LSgGqkq~~--r~-l~~p~iLlLDEPts~LD~~~~l 215 (273)
+|+.++ . ..+.+.+.+.++.+. ..||+||+||. ++ +.+|+++|||||....+.. +
T Consensus 73 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~ls~g~~~r~~~~~~~~~~~~lilDg~~~~~~~~--l 150 (245)
T 2jeo_A 73 LTAEQKAKALKGQYNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPETTVVYPADVVLFEGILVFYSQE--I 150 (245)
T ss_dssp CCHHHHHHHHTTCCCTTSGGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEECTTTTTSHH--H
T ss_pred cCHhHhhhhhccCCCCCCcccccHHHHHHHHHHHHCCCCeecccccccccCccCceEEecCCCEEEEeCccccccHH--H
Confidence 344433 1 123444556666543 57999998765 22 6789999999998877754 2
Q ss_pred HHHHhcCCcEEEEc
Q 024032 216 KYVLRRVDFAMVVS 229 (273)
Q Consensus 216 ~~l~~~~g~tiiiv 229 (273)
. +..+.+|+++
T Consensus 151 ~---~~~~~~i~v~ 161 (245)
T 2jeo_A 151 R---DMFHLRLFVD 161 (245)
T ss_dssp H---TTCSEEEEEE
T ss_pred H---HhcCeEEEEE
Confidence 2 2237788887
No 84
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.74 E-value=9.7e-21 Score=175.95 Aligned_cols=170 Identities=10% Similarity=-0.034 Sum_probs=112.2
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC------
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------ 137 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------ 137 (273)
..++.+++++.|..+ ..+ |+++ |+|.+|++++|+||||||||||+++|+|+.. +.|.|.+.|++..+
T Consensus 44 ~~i~~~~l~~~~~tg-~~a----ld~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~ 117 (347)
T 2obl_A 44 DPLLRQVIDQPFILG-VRA----IDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLA 117 (347)
T ss_dssp CSTTCCCCCSEECCS-CHH----HHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHT
T ss_pred CCeeecccceecCCC-CEE----EEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHH
Confidence 468889999988533 334 9999 9999999999999999999999999999999 99999998875321
Q ss_pred ------CCccEEEEeccchhhhccCCcccccccccCCHHHHHHHHHHh----------cccCCHHHHHHH-HhcCCCCEE
Q 024032 138 ------SSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEEL----------SSWMSEGVHHNQ-RCLRSDDCA 200 (273)
Q Consensus 138 ------~~~~i~~v~q~~~~~~~~~~~~tv~en~~~~~~~~~~~l~~~----------~~~LSgGqkq~~-r~l~~p~iL 200 (273)
..+.+.++.|..... ....++..+ .-.+.+..... ...||+|| |+. .++.+|++
T Consensus 118 ~~~~~~~~~~v~~~~~~~~~~---~~r~~~~~~----~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~lal~~p~~- 188 (347)
T 2obl_A 118 LLPQSTLSKCVLVVTTSDRPA---LERMKAAFT----ATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLASGEPDV- 188 (347)
T ss_dssp TSCHHHHTTEEEEEECTTSCH---HHHHHHHHH----HHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHHTTCCCC-
T ss_pred hhhhhhhhceEEEEECCCCCH---HHHHHHHHH----HHHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHHcCCCCc-
Confidence 122344444321100 000000000 00001111100 15689999 555 33778877
Q ss_pred EEcCcCCCCCHH--HHHHH----HHh-cCCc-----EEEEc------eeCCEEEEEeCCeEeeecChhhhcc
Q 024032 201 LMKNDAEIDDLK--SSPKY----VLR-RVDF-----AMVVS------NIAEIYKALKAGDSKPLDATKRLFS 254 (273)
Q Consensus 201 lLDEPts~LD~~--~~l~~----l~~-~~g~-----tiiiv------~~ad~i~vl~~G~i~~~g~~~~l~~ 254 (273)
|+||||. ..+.+ +.+ +.|. ||+++ .+||++++|.+|+|+..++++++..
T Consensus 189 -----t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~~~i~d~v~~i~dG~Ivl~~~l~~~~~ 255 (347)
T 2obl_A 189 -----RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVNDPIGDEVRSILDGHIVLTRELAEENH 255 (347)
T ss_dssp -----BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCCCHHHHHHHHHCSEEEEBCHHHHTTTC
T ss_pred -----ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCCChhhhheEEeeCcEEEEeCCHHHcCC
Confidence 9999999 22333 322 2365 67766 3579999999999999998888754
No 85
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.73 E-value=7.3e-19 Score=152.93 Aligned_cols=146 Identities=12% Similarity=0.080 Sum_probs=86.3
Q ss_pred eeeeee--EEcCCcEEEEEcCCCChHHHHHHHHh--hCcc-CccEEEECCeeCCC----CCccEEEEeccchhhhccCCc
Q 024032 88 IQKGGM--DIPPVITILLMGFSGSGKSSLVNLMY--SVLS-RSGLVLFAQTSSGN----SSHTITMYMEEHNVMRSLQSG 158 (273)
Q Consensus 88 L~~is~--~i~~Ge~~aivGpnGsGKSTLl~ll~--gl~~-~~G~I~i~g~~i~~----~~~~i~~v~q~~~~~~~~~~~ 158 (273)
|+.+ + .|++|++++|+||||||||||+++|+ |+.. ..|.+.+.+..... ..+.+++.+|+.... ..
T Consensus 19 lD~~-l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----~~ 93 (251)
T 2ehv_A 19 FDEL-IEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKE----GK 93 (251)
T ss_dssp TGGG-TTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHT----TS
T ss_pred HHHH-hcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhc----CC
Confidence 5554 3 68999999999999999999999999 7646 77888887754321 223455666654332 22
Q ss_pred ccccccccCCHHHHHHHHHHhcccCCHHHHHHH--Hh--cCCCCEEEEcCcCCCCC-----HH------HHHHHHHhcCC
Q 024032 159 FCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQ--RC--LRSDDCALMKNDAEIDD-----LK------SSPKYVLRRVD 223 (273)
Q Consensus 159 ~tv~en~~~~~~~~~~~l~~~~~~LSgGqkq~~--r~--l~~p~iLlLDEPts~LD-----~~------~~l~~l~~~~g 223 (273)
+++.++...................+.++.... .. ..+|++++|||||+++| +. .+++.++++ |
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~-g 172 (251)
T 2ehv_A 94 IAIVDGVSSVVGLPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEM-G 172 (251)
T ss_dssp EEEEC-------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHH-C
T ss_pred EEEEEccccccccccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHC-C
Confidence 355554221111000000111122233333222 11 47999999999999997 22 334555554 9
Q ss_pred cEEEEc------e-----------eC-CEEEEEe
Q 024032 224 FAMVVS------N-----------IA-EIYKALK 239 (273)
Q Consensus 224 ~tiiiv------~-----------~a-d~i~vl~ 239 (273)
+|||++ . +| |++++|+
T Consensus 173 ~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 173 VTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp CEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred CeEEEEECCCCCCcccccccChhhEeeeEEEEEe
Confidence 999998 1 24 9999995
No 86
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.73 E-value=5.6e-17 Score=151.22 Aligned_cols=71 Identities=17% Similarity=0.087 Sum_probs=56.0
Q ss_pred cCCHHHHHHHH---h-c---------CCCCEEEEcCcCCCCCHH--HHHHHHHhcCCcEEEEce----eCCEEEEEeCCe
Q 024032 182 WMSEGVHHNQR---C-L---------RSDDCALMKNDAEIDDLK--SSPKYVLRRVDFAMVVSN----IAEIYKALKAGD 242 (273)
Q Consensus 182 ~LSgGqkq~~r---~-l---------~~p~iLlLDEPts~LD~~--~~l~~l~~~~g~tiiiv~----~ad~i~vl~~G~ 242 (273)
.||+||||+.. + + .+|++|||||||++||+. ..+.++..+.+.|+|++. .+|++++|++|+
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th~~~~~~~i~~l~~G~ 344 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTELAPGAALTLRAQAGR 344 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESSCCTTCSEEEEEETTE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEeccccCCEEEEEECCE
Confidence 69999999762 2 4 699999999999999999 333333333346777774 589999999999
Q ss_pred EeeecChhhh
Q 024032 243 SKPLDATKRL 252 (273)
Q Consensus 243 i~~~g~~~~l 252 (273)
++..|+++++
T Consensus 345 i~~~g~~~~~ 354 (359)
T 2o5v_A 345 FTPVADEEMQ 354 (359)
T ss_dssp EEECCCTTTS
T ss_pred EEecCCHHHH
Confidence 9999999886
No 87
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.72 E-value=3.7e-18 Score=175.90 Aligned_cols=156 Identities=10% Similarity=0.098 Sum_probs=94.0
Q ss_pred ceEEEEEEEEeec---CCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc--CccEEEECCeeCCCCCc
Q 024032 66 LNELRHKFLSYRS---GDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS--RSGLVLFAQTSSGNSSH 140 (273)
Q Consensus 66 ~i~~~~v~~~y~~---g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~--~~G~I~i~g~~i~~~~~ 140 (273)
.+++++...-+-. ++..+ +++++|++++|++++|+||||||||||||++++..- ..|... .....
T Consensus 631 ~i~i~~~rHP~le~~~~~~~v----~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~v------pa~~~ 700 (934)
T 3thx_A 631 RIILKASRHACVEVQDEIAFI----PNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFV------PCESA 700 (934)
T ss_dssp EEEEEEECCTTTTTC--CCCC----CEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCB------SEEEE
T ss_pred ceEeecCccchhhhcCCceee----cccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcc------ccccc
Confidence 4666655443311 12344 999999999999999999999999999999944321 223110 00000
Q ss_pred cEEEEeccchhhhccCCcccccccccCCHHHHHHHHHHhcccCCHHHHH---HHHh---cCCCCEEEEcCcCCCCCHHH-
Q 024032 141 TITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHH---NQRC---LRSDDCALMKNDAEIDDLKS- 213 (273)
Q Consensus 141 ~i~~v~q~~~~~~~~~~~~tv~en~~~~~~~~~~~l~~~~~~LSgGqkq---~~r~---l~~p~iLlLDEPts~LD~~~- 213 (273)
.++. +. .+....+.. +.+...+|+|+++ ..++ +.+|+++||||||+|+|+..
T Consensus 701 ~~~~-------~d------~i~~~ig~~--------d~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~ 759 (934)
T 3thx_A 701 EVSI-------VD------CILARVGAG--------DSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDG 759 (934)
T ss_dssp EEEC-------CS------EEEEECC-----------------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHH
T ss_pred cchH-------HH------HHHHhcCch--------hhHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHH
Confidence 0000 00 011111111 1122335555544 3322 68999999999999999982
Q ss_pred ------HHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhh
Q 024032 214 ------SPKYVLRRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRL 252 (273)
Q Consensus 214 ------~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l 252 (273)
.++.+.++.|.|+|++ .+||++..+.+|++...++.+++
T Consensus 760 ~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~l 811 (934)
T 3thx_A 760 FGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETL 811 (934)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTEE
T ss_pred HHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCCcE
Confidence 2345555458899888 45788888999999887776665
No 88
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.71 E-value=1.4e-18 Score=158.11 Aligned_cols=143 Identities=17% Similarity=0.118 Sum_probs=68.4
Q ss_pred EEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhC-cc-CccEEEECCeeCCC--CCccEEEE
Q 024032 70 RHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSV-LS-RSGLVLFAQTSSGN--SSHTITMY 145 (273)
Q Consensus 70 ~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl-~~-~~G~I~i~g~~i~~--~~~~i~~v 145 (273)
.|+++.| +++.+ +++++|+| +|+||||||||||+++|+|. +. ++| |.++|.++.. ..+.++++
T Consensus 2 ~~l~~~~--~~~~~----l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~~~~~~~~~ 68 (301)
T 2qnr_A 2 SNLPNQV--HRKSV----KKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTVQIEASTVE 68 (301)
T ss_dssp ----------------------CEEE------EEEEETTSSHHHHHHHHHC-------------------------CEEE
T ss_pred CCCcceE--CCEEE----EcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcceEeeEEEE
Confidence 3566776 45566 99999998 99999999999999999997 66 888 8888876542 23456778
Q ss_pred eccchhhhccCCcccccccccCCH-----HH-------HHHHHHHhcccCCHHHHHHHHhcCCCCEEEEcCcCCC-CCHH
Q 024032 146 MEEHNVMRSLQSGFCVYDSRGFNY-----NR-------VHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEI-DDLK 212 (273)
Q Consensus 146 ~q~~~~~~~~~~~~tv~en~~~~~-----~~-------~~~~l~~~~~~LSgGqkq~~r~l~~p~iLlLDEPts~-LD~~ 212 (273)
+|.... ...++++|+.++.. +. +.+..+.....+||||||+....+---++++||||++ ||+.
T Consensus 69 ~q~~~~----~~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~ 144 (301)
T 2qnr_A 69 IEERGV----KLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPL 144 (301)
T ss_dssp EC---C----CEEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHH
T ss_pred ecCCCc----ccCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHH
Confidence 876654 34558888866511 11 1122223447899999765321111129999999985 9998
Q ss_pred --HHHHHHHhcCCcEEEEc
Q 024032 213 --SSPKYVLRRVDFAMVVS 229 (273)
Q Consensus 213 --~~l~~l~~~~g~tiiiv 229 (273)
+.++.+.++.+.++++.
T Consensus 145 ~~~~l~~l~~~~~iilV~~ 163 (301)
T 2qnr_A 145 DVAFMKAIHNKVNIVPVIA 163 (301)
T ss_dssp HHHHHHHHTTTSCEEEEEC
T ss_pred HHHHHHHHHhcCCEEEEEE
Confidence 44556654334455544
No 89
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.71 E-value=1.6e-18 Score=156.08 Aligned_cols=148 Identities=16% Similarity=0.106 Sum_probs=90.2
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-Ccc-EEEECCeeCCC--CCccEEEEeccchhhhccCCcccccc
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSG-LVLFAQTSSGN--SSHTITMYMEEHNVMRSLQSGFCVYD 163 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G-~I~i~g~~i~~--~~~~i~~v~q~~~~~~~~~~~~tv~e 163 (273)
|+++++.+++|++++|+||||||||||++.|+|.+. .+| .|.+.+..... .++++..+.++... ++.+
T Consensus 25 Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~~--------~~~~ 96 (296)
T 1cr0_A 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRL--------RQSD 96 (296)
T ss_dssp HHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTTCCG--------GGCH
T ss_pred HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHHHHHHHHHHHcCCCh--------hhcc
Confidence 999999999999999999999999999999999988 777 67554333221 11222222222111 1111
Q ss_pred c---ccCCHHHHHHHHHHh----c-------ccCCHHHH-HHHHh---cCCCCEEEEcCcCC---C---CCH-H------
Q 024032 164 S---RGFNYNRVHEGLEEL----S-------SWMSEGVH-HNQRC---LRSDDCALMKNDAE---I---DDL-K------ 212 (273)
Q Consensus 164 n---~~~~~~~~~~~l~~~----~-------~~LSgGqk-q~~r~---l~~p~iLlLDEPts---~---LD~-~------ 212 (273)
+ ...+.++..++++.+ . ..+|.++. |+.++ ..+|++||+||||+ + +|. .
T Consensus 97 ~l~~~~~~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~l~~~~~a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~ 176 (296)
T 1cr0_A 97 SLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSASGESDERKMIDNLM 176 (296)
T ss_dssp HHHHHHHHHTHHHHHHHHHHSSSCEEEECCCCSCCHHHHHHHHHHHHHTTCCSEEEEEEEC-----------CHHHHHHH
T ss_pred ccccCCCCHHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHH
Confidence 1 011111222222222 1 34788874 44432 67999999999999 5 454 2
Q ss_pred HHHHHHHhcCCcEEEEc---e---------------------------eCCEEEEEeCCeE
Q 024032 213 SSPKYVLRRVDFAMVVS---N---------------------------IAEIYKALKAGDS 243 (273)
Q Consensus 213 ~~l~~l~~~~g~tiiiv---~---------------------------~ad~i~vl~~G~i 243 (273)
..++.++++.|+|||++ . .||+|++|++|+.
T Consensus 177 ~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 177 TKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp HHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred HHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 33556666568999988 1 3689999998875
No 90
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.70 E-value=7.7e-18 Score=144.65 Aligned_cols=131 Identities=14% Similarity=0.100 Sum_probs=81.8
Q ss_pred EEcCCcEEEEEcCCCChHHHHHHHHhhCcc---Ccc-----EEEECCeeCCCCCccEEEEeccchhhhccCCcccccccc
Q 024032 94 DIPPVITILLMGFSGSGKSSLVNLMYSVLS---RSG-----LVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSR 165 (273)
Q Consensus 94 ~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~---~~G-----~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en~ 165 (273)
-|++|++++|+||||||||||+++|+|++. .+| .+++++.+... .+++++++|...+++ .++.+|.
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~-~~~i~~~~~~~~~~~-----~~~~~~~ 94 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR-PERIREIAQNRGLDP-----DEVLKHI 94 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC-HHHHHHHHHHTTSCH-----HHHHHTE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC-HHHHHHHHHHcCCCH-----HHHhhcE
Confidence 689999999999999999999999999543 233 66776654211 123344444443221 1445542
Q ss_pred cCCHHHHHHHHHHhcccCCHHHHHH----H-----Hh---cCCCCEEEEcCcCCCCCHH------------------HHH
Q 024032 166 GFNYNRVHEGLEELSSWMSEGVHHN----Q-----RC---LRSDDCALMKNDAEIDDLK------------------SSP 215 (273)
Q Consensus 166 ~~~~~~~~~~l~~~~~~LSgGqkq~----~-----r~---l~~p~iLlLDEPts~LD~~------------------~~l 215 (273)
.+. ..++.++++. . ++ ..+|++++||||++++|+. ..+
T Consensus 95 ~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l 162 (231)
T 4a74_A 95 YVA------------RAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADL 162 (231)
T ss_dssp EEE------------ECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHH
T ss_pred EEE------------ecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHH
Confidence 110 1112221110 0 11 3589999999999999982 223
Q ss_pred HHHHhcCCcEEEEcee------------CCEEEEEeCCe
Q 024032 216 KYVLRRVDFAMVVSNI------------AEIYKALKAGD 242 (273)
Q Consensus 216 ~~l~~~~g~tiiiv~~------------ad~i~vl~~G~ 242 (273)
..+.++.|.|||++.| ||++++|++|+
T Consensus 163 ~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 163 HRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred HHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 4455555999999944 68888888753
No 91
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.68 E-value=2.9e-19 Score=152.53 Aligned_cols=141 Identities=13% Similarity=0.073 Sum_probs=93.4
Q ss_pred CcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeCC---CCCccEEEEeccchhhhccCCcccccccccCCHHH--H
Q 024032 98 VITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSG---NSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNR--V 172 (273)
Q Consensus 98 Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i~---~~~~~i~~v~q~~~~~~~~~~~~tv~en~~~~~~~--~ 172 (273)
|++++|+||||||||||+++|+|+++++| |.++|.+.. ..++++++++|+..-.. +...+..+.... .
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~~~G-i~~~g~~~~~~~~~~~~ig~~~~~~~g~~------~~l~~~~~~~~~~~~ 73 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLKSSG-VPVDGFYTEEVRQGGRRIGFDVVTLSGTR------GPLSRVGLEPPPGKR 73 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHHHTT-CCCEEEECCEEETTSSEEEEEEEETTSCE------EEEEECCCCCCSSSC
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcccCC-EEEcCEecchhHhhhceEEEEEEecccce------ehhhcccccCCcccc
Confidence 78999999999999999999999988778 999887664 35678899998752100 111111110000 0
Q ss_pred HHHHHHhcccCCHHHHHHH----H----hcCCCCEEEEcC--cCCCCCHH--HHHHHHHhcCCcEEEE--c--ee-----
Q 024032 173 HEGLEELSSWMSEGVHHNQ----R----CLRSDDCALMKN--DAEIDDLK--SSPKYVLRRVDFAMVV--S--NI----- 231 (273)
Q Consensus 173 ~~~l~~~~~~LSgGqkq~~----r----~l~~p~iLlLDE--Pts~LD~~--~~l~~l~~~~g~tiii--v--~~----- 231 (273)
...+...+..+|+|||++. + .+.+|++||||| |+..+|+. +.+.++.+. ..++|+ + .|
T Consensus 74 ~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~-~~~~ilgti~vsh~~~~~ 152 (189)
T 2i3b_A 74 ECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLST-PGTIILGTIPVPKGKPLA 152 (189)
T ss_dssp CEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC-SSCCEEEECCCCCSSCCT
T ss_pred ccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhC-CCcEEEEEeecCCCCchH
Confidence 0011122356889997654 2 257899999999 89888877 566666655 445553 2 12
Q ss_pred -CCEEEEEeCCeEeee
Q 024032 232 -AEIYKALKAGDSKPL 246 (273)
Q Consensus 232 -ad~i~vl~~G~i~~~ 246 (273)
.|+|..+++|+|+.-
T Consensus 153 ~vd~i~~~~~~~i~~~ 168 (189)
T 2i3b_A 153 LVEEIRNRKDVKVFNV 168 (189)
T ss_dssp THHHHHTTCCSEEEEC
T ss_pred HHHHHeecCCcEEEEe
Confidence 367888889998764
No 92
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.67 E-value=1.9e-17 Score=168.43 Aligned_cols=152 Identities=9% Similarity=-0.002 Sum_probs=90.1
Q ss_pred CceEEEEEEEEeec---CCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc--CccEEEECCeeCCCCC
Q 024032 65 GLNELRHKFLSYRS---GDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS--RSGLVLFAQTSSGNSS 139 (273)
Q Consensus 65 ~~i~~~~v~~~y~~---g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~--~~G~I~i~g~~i~~~~ 139 (273)
..+++++...-.-. ++..+ +++++|+ ++|++++|+||||||||||||+|+|+.. ..|. .+....
T Consensus 576 ~~i~i~~~rHP~le~~~~~~~v----lndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~------~vpa~~ 644 (800)
T 1wb9_A 576 PGIRITEGRHPVVEQVLNEPFI----ANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS------YVPAQK 644 (800)
T ss_dssp SCEEEEEECCTTHHHHCSSCCC----CEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTC------CBSSSE
T ss_pred CCEEEEeccccEEEccCCCcee----eeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCc------ccchhc
Confidence 34666655332211 33445 9999999 9999999999999999999999999754 4442 111112
Q ss_pred ccEEEEeccchhhhccCCcccccccccCCHHHHHHHHHHhcccCCHHHHHHHH---hcCCCCEEEEcCcCCCCCHH----
Q 024032 140 HTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQR---CLRSDDCALMKNDAEIDDLK---- 212 (273)
Q Consensus 140 ~~i~~v~q~~~~~~~~~~~~tv~en~~~~~~~~~~~l~~~~~~LSgGqkq~~r---~l~~p~iLlLDEPts~LD~~---- 212 (273)
..++++.| + +..+++.+|... -.+.+|+++++... .+.+|+++|||||++|+|+.
T Consensus 645 ~~i~~~~~---i----~~~~~~~d~l~~-----------~~stf~~e~~~~~~il~~a~~psLlLLDEp~~Gtd~~d~~~ 706 (800)
T 1wb9_A 645 VEIGPIDR---I----FTRVGAADDLAS-----------GRSTFMVEMTETANILHNATEYSLVLMDEIGRGTSTYDGLS 706 (800)
T ss_dssp EEECCCCE---E----EEEEC----------------------CHHHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHH
T ss_pred ccceeHHH---H----HhhCCHHHHHHh-----------hhhhhhHHHHHHHHHHHhccCCCEEEEECCCCCCChhHHHH
Confidence 23333322 1 222344443211 11346777765432 27899999999999998886
Q ss_pred ---HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeEee
Q 024032 213 ---SSPKYVLRRVDFAMVVS-------NIAEIYKALKAGDSKP 245 (273)
Q Consensus 213 ---~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i~~ 245 (273)
..++.+.++.|.++|++ .+||++..+.+|++..
T Consensus 707 i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~ 749 (800)
T 1wb9_A 707 LAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDA 749 (800)
T ss_dssp HHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEEEE
T ss_pred HHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEEEEE
Confidence 23455655348888888 2345544455555443
No 93
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.67 E-value=5.5e-17 Score=166.87 Aligned_cols=118 Identities=13% Similarity=0.123 Sum_probs=75.6
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc--CccEEEECCeeCCCCCccEEEEeccchhhhccCCcccccccc
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS--RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSR 165 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~--~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en~ 165 (273)
+++++|++++|++++|+||||||||||||+++++.. ..|.. +......++.+ ..+ +..+.+.+
T Consensus 663 ~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~------vpa~~~~i~~~---d~i----~~~ig~~d-- 727 (918)
T 3thx_B 663 PNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSY------VPAEEATIGIV---DGI----FTRMGAAD-- 727 (918)
T ss_dssp CEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCC------BSSSEEEEECC---SEE----EEEC------
T ss_pred cccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCcc------ccchhhhhhHH---HHH----HHhCChHH--
Confidence 999999999999999999999999999999987643 22321 10000111110 011 11111121
Q ss_pred cCCHHHHHHHHHHhcccCCHHHHHHHHh---cCCCCEEEEcCcCCCCCHHH-------HHHHHHhcCCcEEEEc
Q 024032 166 GFNYNRVHEGLEELSSWMSEGVHHNQRC---LRSDDCALMKNDAEIDDLKS-------SPKYVLRRVDFAMVVS 229 (273)
Q Consensus 166 ~~~~~~~~~~l~~~~~~LSgGqkq~~r~---l~~p~iLlLDEPts~LD~~~-------~l~~l~~~~g~tiiiv 229 (273)
.+..-.+.+|+||+|+..+ +.+|+++||||||+|||+.. .++.+.++.|.|+|++
T Consensus 728 ---------~l~~~~stfs~em~~~~~il~~a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~v 792 (918)
T 3thx_B 728 ---------NIYKGRSTFMEELTDTAEIIRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFV 792 (918)
T ss_dssp ---------------CCHHHHHHHHHHHHHHCCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ---------HHHHhHHHhhHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 1222236789999886533 78999999999999999982 2344554458999998
No 94
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.66 E-value=3.2e-18 Score=169.64 Aligned_cols=167 Identities=14% Similarity=0.060 Sum_probs=95.6
Q ss_pred ceEEEEEEEEeecCCeeeeccceeee----------eeEEcCCcEEEEEcCCCChHHHHHHHHhhCc-c-CccEEEECCe
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKG----------GMDIPPVITILLMGFSGSGKSSLVNLMYSVL-S-RSGLVLFAQT 133 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~i----------s~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~-~-~~G~I~i~g~ 133 (273)
.++++++++.|....+++ |+.+ +|+++. +||+||||||||||+++|+|++ + ++|.|+++|.
T Consensus 10 ~i~~~~l~~~~~~~~r~l----l~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~ 82 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPC----IDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPL 82 (608)
T ss_dssp ----------CHHHHHHH----HHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCE
T ss_pred hhhhhhhhHHHHHHHHHH----HHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCE
Confidence 577888998886432333 4333 366665 9999999999999999999997 4 6999999998
Q ss_pred eCC--------CCCccEEEEeccchhhhccCCcccccccccCCHHHHHHHHHHhc---ccCCHHHHHHHHh----cCCCC
Q 024032 134 SSG--------NSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELS---SWMSEGVHHNQRC----LRSDD 198 (273)
Q Consensus 134 ~i~--------~~~~~i~~v~q~~~~~~~~~~~~tv~en~~~~~~~~~~~l~~~~---~~LSgGqkq~~r~----l~~p~ 198 (273)
++. .+++.+++++|+..+ +...||.+|... ....++ ..+|. +..++ ...|+
T Consensus 83 ~i~~~~~~~~~~~~~~i~~v~Q~~~l----~~~~tv~e~i~~-------~~~~~~~~~~~~s~---~~i~l~i~~~~~p~ 148 (608)
T 3szr_A 83 VLKLKKLVNEDKWRGKVSYQDYEIEI----SDASEVEKEINK-------AQNAIAGEGMGISH---ELITLEISSRDVPD 148 (608)
T ss_dssp EEEEEECSSSSCCEEEESCC---CCC----CCHHHHHTTHHH-------HHHHHHCSSSCCCS---CCEEEEEEESSSCC
T ss_pred EEEEecCCccccceeEEeeecccccC----CCHHHHHHHHHH-------HHHHhcCCccccch---HHHHHHhcCCCCCc
Confidence 852 356778899998765 344578776432 222222 22221 11111 46899
Q ss_pred EEEEcCc------CCCCCHH------HHHHHHHh-cCCcEEEEce--------------------eCCEEEEEeCCeEee
Q 024032 199 CALMKND------AEIDDLK------SSPKYVLR-RVDFAMVVSN--------------------IAEIYKALKAGDSKP 245 (273)
Q Consensus 199 iLlLDEP------ts~LD~~------~~l~~l~~-~~g~tiiiv~--------------------~ad~i~vl~~G~i~~ 245 (273)
++|+||| |++||+. ++++.+.+ ..+.+++++. ....|+|+.++.++.
T Consensus 149 LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv~ 228 (608)
T 3szr_A 149 LTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVD 228 (608)
T ss_dssp EEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGGSS
T ss_pred eeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhhcC
Confidence 9999999 9999998 23444332 2244455541 124688999999888
Q ss_pred ecChhhhc
Q 024032 246 LDATKRLF 253 (273)
Q Consensus 246 ~g~~~~l~ 253 (273)
.|+.+++.
T Consensus 229 ~g~~~~~~ 236 (608)
T 3szr_A 229 KGTEDKVV 236 (608)
T ss_dssp SSSTTCCC
T ss_pred cccHHHHH
Confidence 88765443
No 95
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.65 E-value=2e-17 Score=153.49 Aligned_cols=152 Identities=16% Similarity=0.079 Sum_probs=98.4
Q ss_pred eeee-eeEEcCCcEEEEEcCCCChHHHHHHHHhhCc--c-Cc----cE-EEECCeeCCCCCccEEEEeccchhhhccCCc
Q 024032 88 IQKG-GMDIPPVITILLMGFSGSGKSSLVNLMYSVL--S-RS----GL-VLFAQTSSGNSSHTITMYMEEHNVMRSLQSG 158 (273)
Q Consensus 88 L~~i-s~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~--~-~~----G~-I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~ 158 (273)
|+.+ ++.|++|++++|+||||||||||++.+++.. + ++ |. |++++.+.. .++++++++|...++ .
T Consensus 120 LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~-~~~~i~~i~q~~~~~-----~ 193 (349)
T 1pzn_A 120 LDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF-RPERIREIAQNRGLD-----P 193 (349)
T ss_dssp HHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC-CHHHHHHHHHTTTCC-----H
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC-CHHHHHHHHHHcCCC-----H
Confidence 7766 7899999999999999999999999999987 4 44 67 899887642 234556666665432 1
Q ss_pred ccccccccC----CHHHHH---HHHHHhcccCCHHHHHHHHhcCCCCEEEEcCcCCCCCHH---------------H---
Q 024032 159 FCVYDSRGF----NYNRVH---EGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLK---------------S--- 213 (273)
Q Consensus 159 ~tv~en~~~----~~~~~~---~~l~~~~~~LSgGqkq~~r~l~~p~iLlLDEPts~LD~~---------------~--- 213 (273)
.++.+|..+ ...... +.+..+...||+|| .+|++||+||||+++|+. .
T Consensus 194 ~~v~~ni~~~~~~~~~~~~~~l~~~~~~~~~lS~G~-------~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~ 266 (349)
T 1pzn_A 194 DEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTD-------RPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLA 266 (349)
T ss_dssp HHHGGGEEEEECCSHHHHHHHHHHHHHHHHHSSSSS-------SCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHH
T ss_pred HHHhhCEEEEecCChHHHHHHHHHHHHHHHHhcccc-------CCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHH
Confidence 256665321 222222 22333336678877 789999999999999884 1
Q ss_pred HHHHHHhcCCcEEEEceeC--------CEEEEEeCCeEeeecChhhh
Q 024032 214 SPKYVLRRVDFAMVVSNIA--------EIYKALKAGDSKPLDATKRL 252 (273)
Q Consensus 214 ~l~~l~~~~g~tiiiv~~a--------d~i~vl~~G~i~~~g~~~~l 252 (273)
.++.+.++.|.|||++++. +...+...|++++++....+
T Consensus 267 ~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~~~rL 313 (349)
T 1pzn_A 267 DLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRV 313 (349)
T ss_dssp HHHHHHHHTTCEEEEEEECC---------------CCCCCTTCSEEE
T ss_pred HHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecCcEEE
Confidence 1344555568999999332 12345567777766654444
No 96
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.65 E-value=3.1e-17 Score=155.85 Aligned_cols=152 Identities=13% Similarity=0.097 Sum_probs=87.6
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-Ccc--EEEECCeeCCCCCc
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSG--LVLFAQTSSGNSSH 140 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G--~I~i~g~~i~~~~~ 140 (273)
.+.+++++++++| +++.+ +++++|+| +|+||||||||||+++|+|+.. ..| .+.+++.. .....
T Consensus 9 ~~~l~~~~l~~~y--~~~~v----l~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~-t~~~~ 75 (418)
T 2qag_C 9 EGYVGFANLPNQV--YRKSV----KRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKK-TVQVE 75 (418)
T ss_dssp ------CCCCCCT--TTTTC----C-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC------CCEEE
T ss_pred cCcEEEEecceeE--CCEEE----ecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCcc-ceeee
Confidence 3568899999888 44556 99999998 9999999999999999999876 554 22221111 11224
Q ss_pred cEEEEeccchhhhccCCcccccccccCCHH-----HHHHHHHHhcccCCHHHHHHH---Hh-cCCCC---EEEEcCcC-C
Q 024032 141 TITMYMEEHNVMRSLQSGFCVYDSRGFNYN-----RVHEGLEELSSWMSEGVHHNQ---RC-LRSDD---CALMKNDA-E 207 (273)
Q Consensus 141 ~i~~v~q~~~~~~~~~~~~tv~en~~~~~~-----~~~~~l~~~~~~LSgGqkq~~---r~-l~~p~---iLlLDEPt-s 207 (273)
.+++++|.... ...+|++||.++... ....+.+.+...++.+++|+. |+ +.+|+ +|++|||| .
T Consensus 76 ~i~~v~q~~~~----~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~ 151 (418)
T 2qag_C 76 QSKVLIKEGGV----QLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGH 151 (418)
T ss_dssp EEECC----------CEEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CC
T ss_pred eEEEEEecCCc----ccceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCccc
Confidence 56777776654 345699999765321 112233333345566665543 33 67999 99999999 6
Q ss_pred CCCHHH--HHHHHHhcCCcEEEEc-eeCCE
Q 024032 208 IDDLKS--SPKYVLRRVDFAMVVS-NIAEI 234 (273)
Q Consensus 208 ~LD~~~--~l~~l~~~~g~tiiiv-~~ad~ 234 (273)
+||+.. .++.+.. +.++|+| +.+|.
T Consensus 152 ~L~~~d~~~lk~L~~--~v~iIlVinK~Dl 179 (418)
T 2qag_C 152 GLKPLDIEFMKRLHE--KVNIIPLIAKADT 179 (418)
T ss_dssp SCCHHHHHHHHHHTT--TSEEEEEEESTTS
T ss_pred CCCHHHHHHHHHHhc--cCcEEEEEEcccC
Confidence 999984 5666654 6776666 55553
No 97
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.65 E-value=1.3e-16 Score=161.49 Aligned_cols=132 Identities=9% Similarity=0.018 Sum_probs=87.0
Q ss_pred CCceEEEEEEEEeec-CCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc--CccEEEECCeeCCCCCc
Q 024032 64 DGLNELRHKFLSYRS-GDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS--RSGLVLFAQTSSGNSSH 140 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~-g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~--~~G~I~i~g~~i~~~~~ 140 (273)
.+.+++++...-+-. ++..+ ++|+||+ |++++|+||||||||||+|+|+|+.. ..|.+. ...+.
T Consensus 548 ~~~i~i~~~rHP~le~~~~~v----l~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v------pa~~~ 614 (765)
T 1ewq_A 548 GDRLQIRAGRHPVVERRTEFV----PNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV------PAEEA 614 (765)
T ss_dssp SSSEEEEEECCTTGGGTSCCC----CEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB------SSSEE
T ss_pred CCcEEEEEeECceEccCCceE----eeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee------ehhcc
Confidence 445777776332211 33455 9999999 99999999999999999999999864 777652 11223
Q ss_pred cEEEEeccchhhhccCCcccccccccCCHHHHHHHHHHhcccCCHHHHHHH---Hh---cCCCCEEEEcCc---CCCCCH
Q 024032 141 TITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQ---RC---LRSDDCALMKND---AEIDDL 211 (273)
Q Consensus 141 ~i~~v~q~~~~~~~~~~~~tv~en~~~~~~~~~~~l~~~~~~LSgGqkq~~---r~---l~~p~iLlLDEP---ts~LD~ 211 (273)
.+++++| + +..+++.||.. ..+|+|++++. ++ +.+|+++||||| |++||+
T Consensus 615 ~i~~v~~---i----~~~~~~~d~l~--------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~ 673 (765)
T 1ewq_A 615 HLPLFDG---I----YTRIGASDDLA--------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDG 673 (765)
T ss_dssp EECCCSE---E----EEECCC--------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHH
T ss_pred ceeeHHH---h----hccCCHHHHHH--------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCH
Confidence 4554443 2 22335555422 24788887754 22 689999999999 999998
Q ss_pred HH----HHHHHHhcCCcEEEEce
Q 024032 212 KS----SPKYVLRRVDFAMVVSN 230 (273)
Q Consensus 212 ~~----~l~~l~~~~g~tiiiv~ 230 (273)
.. .+..+.+ .|.|+|++.
T Consensus 674 ~~~~~~i~~~L~~-~g~~vl~~T 695 (765)
T 1ewq_A 674 VAIATAVAEALHE-RRAYTLFAT 695 (765)
T ss_dssp HHHHHHHHHHHHH-HTCEEEEEC
T ss_pred HHHHHHHHHHHHh-CCCEEEEEe
Confidence 62 3344544 388998883
No 98
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.63 E-value=1.1e-15 Score=140.86 Aligned_cols=58 Identities=9% Similarity=0.064 Sum_probs=44.7
Q ss_pred ccCCHHHHHHH---------Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEE
Q 024032 181 SWMSEGVHHNQ---------RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKA 237 (273)
Q Consensus 181 ~~LSgGqkq~~---------r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~v 237 (273)
..|||||||+. ++ +.+|++|||||||++||+. +.++.+.++ |.|||++ ..||++++
T Consensus 247 ~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~-~~~vi~~sH~~~~~~~~d~~~~ 325 (339)
T 3qkt_A 247 TFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK-IPQVILVSHDEELKDAADHVIR 325 (339)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGG-SSEEEEEESCGGGGGGCSEEEE
T ss_pred HHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEEChHHHHHhCCEEEE
Confidence 45999999953 12 5799999999999999998 234444444 7899888 56899988
Q ss_pred Ee
Q 024032 238 LK 239 (273)
Q Consensus 238 l~ 239 (273)
|+
T Consensus 326 l~ 327 (339)
T 3qkt_A 326 IS 327 (339)
T ss_dssp EE
T ss_pred EE
Confidence 84
No 99
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.62 E-value=1.7e-16 Score=154.40 Aligned_cols=128 Identities=15% Similarity=0.091 Sum_probs=85.3
Q ss_pred eeEEcCCcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeCCCCCccEEEEeccchhhhccCCcccccccccCCHHH
Q 024032 92 GMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNR 171 (273)
Q Consensus 92 s~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en~~~~~~~ 171 (273)
+..+++|++++|+||||||||||++.++|+...+|. +.+.+.+|++..- +.. . ....+.+.++
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~------------~vi~~~~ee~~~~---l~~-~-~~~~g~~~~~ 337 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACANKE------------RAILFAYEESRAQ---LLR-N-AYSWGMDFEE 337 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTC------------CEEEEESSSCHHH---HHH-H-HHTTSCCHHH
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCC------------CEEEEEEeCCHHH---HHH-H-HHHcCCCHHH
Confidence 558999999999999999999999999998773354 0122334433210 000 0 0011222222
Q ss_pred HHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH-----H------HHHHHHhcCCcEEE
Q 024032 172 VHEGLEELS---------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK-----S------SPKYVLRRVDFAMV 227 (273)
Q Consensus 172 ~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~-----~------~l~~l~~~~g~tii 227 (273)
+...+ ..||+||+|+. ++ ..+|++||+| ||++||+. . +++.+++. |.|+|
T Consensus 338 ----~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~-g~tvi 411 (525)
T 1tf7_A 338 ----MERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQE-EITGL 411 (525)
T ss_dssp ----HHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHT-TCEEE
T ss_pred ----HHhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhC-CCEEE
Confidence 11221 56999999976 23 6899999999 99999986 1 23445444 99999
Q ss_pred Ec---e---------------eCCEEEEEeCCe
Q 024032 228 VS---N---------------IAEIYKALKAGD 242 (273)
Q Consensus 228 iv---~---------------~ad~i~vl~~G~ 242 (273)
++ . +||+|++|++|+
T Consensus 412 lvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 412 FTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp EEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred EEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 88 2 369999999886
No 100
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.62 E-value=2e-16 Score=141.23 Aligned_cols=107 Identities=14% Similarity=0.142 Sum_probs=72.4
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-C-ccEEEECCeeCCCC-CccEEEEeccchhhhccCCccccccc
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R-SGLVLFAQTSSGNS-SHTITMYMEEHNVMRSLQSGFCVYDS 164 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~-~G~I~i~g~~i~~~-~~~i~~v~q~~~~~~~~~~~~tv~en 164 (273)
|+++| +++|++++|+||||||||||+++|+|+++ + +|+|.++|.++... +..++++.|...
T Consensus 17 l~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~-------------- 80 (261)
T 2eyu_A 17 VLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREV-------------- 80 (261)
T ss_dssp HHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEB--------------
T ss_pred HHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHh--------------
Confidence 99999 89999999999999999999999999998 7 99999998876421 111222222110
Q ss_pred ccCCHHHHHHHHHHhcccCCHHHHHHHHhcCCCCEEEEcCcCCCCCHHHH---HHHHHhcCCcEEEEc
Q 024032 165 RGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSS---PKYVLRRVDFAMVVS 229 (273)
Q Consensus 165 ~~~~~~~~~~~l~~~~~~LSgGqkq~~r~l~~p~iLlLDEPts~LD~~~~---l~~l~~~~g~tiiiv 229 (273)
+... ..|+..- +..+..+|++|+||||| |+... ++. ... |.+|+++
T Consensus 81 -gl~~-----------~~l~~~l--a~aL~~~p~illlDEp~---D~~~~~~~l~~-~~~-g~~vl~t 129 (261)
T 2eyu_A 81 -GEDT-----------KSFADAL--RAALREDPDVIFVGEMR---DLETVETALRA-AET-GHLVFGT 129 (261)
T ss_dssp -TTTB-----------SCHHHHH--HHHHHHCCSEEEESCCC---SHHHHHHHHHH-HHT-TCEEEEE
T ss_pred -CCCH-----------HHHHHHH--HHHHhhCCCEEEeCCCC---CHHHHHHHHHH-Hcc-CCEEEEE
Confidence 0000 0111111 11224699999999999 88843 333 333 8999887
No 101
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.61 E-value=2.9e-17 Score=139.20 Aligned_cols=56 Identities=20% Similarity=0.160 Sum_probs=36.2
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCc-----c-CccEEEE
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVL-----S-RSGLVLF 130 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~-----~-~~G~I~i 130 (273)
.++++|++|.|. ..+ +++ |++++|..++|+|+||||||||+|.|+|.. . +.|.+.+
T Consensus 3 ~l~~~~~~~~~~---~~~----l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~ 64 (210)
T 1pui_A 3 NLNYQQTHFVMS---APD----IRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQL 64 (210)
T ss_dssp --------CEEE---ESS----GGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CC
T ss_pred chhhhhhhheee---cCC----HhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCcccee
Confidence 478999999995 234 887 999999999999999999999999999987 5 6677654
No 102
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.61 E-value=1.6e-15 Score=147.32 Aligned_cols=57 Identities=7% Similarity=-0.088 Sum_probs=46.6
Q ss_pred C-CHHHHHHHH---h-cCCC--CEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCC
Q 024032 183 M-SEGVHHNQR---C-LRSD--DCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKAG 241 (273)
Q Consensus 183 L-SgGqkq~~r---~-l~~p--~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G 241 (273)
| ||||+||.. + +.+| ++|||||||+|||+. +.++.+.+ |.|||+| ..||++++|+++
T Consensus 397 l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~--~~~vi~itH~~~~~~~~d~~~~~~~~ 473 (517)
T 4ad8_A 397 VASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--TRQVLVVTHLAQIAARAHHHYKVEKQ 473 (517)
T ss_dssp SSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH--HSEEEEECCCHHHHHHSSEEEEEECC
T ss_pred cCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC--CCEEEEEecCHHHHHhCCEEEEEecc
Confidence 5 999999873 2 6789 999999999999998 34566654 7899998 448999999554
No 103
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.59 E-value=2e-16 Score=135.46 Aligned_cols=145 Identities=13% Similarity=0.045 Sum_probs=90.1
Q ss_pred ceeeeee-EEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC--CC---ccEEEEeccchhhhccCCcc
Q 024032 87 GIQKGGM-DIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN--SS---HTITMYMEEHNVMRSLQSGF 159 (273)
Q Consensus 87 ~L~~is~-~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~--~~---~~i~~v~q~~~~~~~~~~~~ 159 (273)
.|+++.+ .+++|++++|+||||||||||++.|++... ..|.+.+.+.+... .. ..+++.+++... ..+
T Consensus 11 ~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 85 (235)
T 2w0m_A 11 DFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIE-----KKL 85 (235)
T ss_dssp HHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBT-----TTE
T ss_pred HHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhh-----CCE
Confidence 3888888 899999999999999999999999999877 77888775544321 00 111222221110 011
Q ss_pred cccccccCCHHHHHHHHHHhcccCCHHHHHHH--Hh--cCCCC--EEEEcCcCCCC--CHH------HHHHHHHhcCCcE
Q 024032 160 CVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQ--RC--LRSDD--CALMKNDAEID--DLK------SSPKYVLRRVDFA 225 (273)
Q Consensus 160 tv~en~~~~~~~~~~~l~~~~~~LSgGqkq~~--r~--l~~p~--iLlLDEPts~L--D~~------~~l~~l~~~~g~t 225 (273)
.+.+..... .. -.......|.++.++. ++ ..+|+ ++++||||+.+ |+. ..++.+.++.|.|
T Consensus 86 ~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~ 160 (235)
T 2w0m_A 86 IIIDALMKE---KE--DQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFT 160 (235)
T ss_dssp EEEECCC---------CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEE
T ss_pred EEEeccccc---cC--ceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCe
Confidence 222211100 00 0011133477776533 22 35899 99999999887 885 3355565556899
Q ss_pred EEEc---e-------------eCCEEEEEeCC
Q 024032 226 MVVS---N-------------IAEIYKALKAG 241 (273)
Q Consensus 226 iiiv---~-------------~ad~i~vl~~G 241 (273)
||++ . +||++++|+..
T Consensus 161 vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 161 IYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp EEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred EEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 9988 2 27899999754
No 104
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.58 E-value=4.4e-15 Score=132.72 Aligned_cols=137 Identities=10% Similarity=0.065 Sum_probs=85.6
Q ss_pred EEcCCcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeCCCCCccEEEEeccchhhhccCCcccccccccCCHHHHH
Q 024032 94 DIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVH 173 (273)
Q Consensus 94 ~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en~~~~~~~~~ 173 (273)
.+++|++++|+||||||||||++.+++... .|.++ .|..... ...+.|+..+..... +.....-. ...+......
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~-~g~~~-~g~~~~~-~~~v~~~~~e~~~~~-~~~r~~~~-g~~~~~~~~~ 100 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA-GGPDL-LEVGELP-TGPVIYLPAEDPPTA-IHHRLHAL-GAHLSAEERQ 100 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH-TCCCT-TCCCCCC-CCCEEEEESSSCHHH-HHHHHHHH-HTTSCHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh-cCCCc-CCCccCC-CccEEEEECCCCHHH-HHHHHHHH-HhhcChhhhh
Confidence 478999999999999999999999998543 45553 3544321 234556554433210 00000000 0112333444
Q ss_pred HHHHHhc---------ccCCHHHHHHHHh-cCCCCEEEEcCcCC--CCCHH---------HHHHHHHhcCCcEEEEceeC
Q 024032 174 EGLEELS---------SWMSEGVHHNQRC-LRSDDCALMKNDAE--IDDLK---------SSPKYVLRRVDFAMVVSNIA 232 (273)
Q Consensus 174 ~~l~~~~---------~~LSgGqkq~~r~-l~~p~iLlLDEPts--~LD~~---------~~l~~l~~~~g~tiiiv~~a 232 (273)
+.++.+. ..||+|+.|+.++ +.+|+++|+||||+ ++|+. ..++.+.++.|+|||++.|.
T Consensus 101 ~~~~~l~l~~~~~~~~~~ls~g~~~~i~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~ 180 (279)
T 1nlf_A 101 AVADGLLIQPLIGSLPNIMAPEWFDGLKRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHA 180 (279)
T ss_dssp HHHHHEEECCCTTSCCCTTSHHHHHHHHHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred hccCceEEeecCCCCcccCCHHHHHHHHHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecC
Confidence 4555543 5689999887755 67999999999999 99873 23455554459999999665
Q ss_pred CEE
Q 024032 233 EIY 235 (273)
Q Consensus 233 d~i 235 (273)
.+.
T Consensus 181 ~~~ 183 (279)
T 1nlf_A 181 SKG 183 (279)
T ss_dssp ---
T ss_pred CCc
Confidence 443
No 105
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.58 E-value=1.8e-16 Score=144.61 Aligned_cols=132 Identities=12% Similarity=0.104 Sum_probs=88.8
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCC-----------CccEEEEeccchhhhccCCccccccc
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNS-----------SHTITMYMEEHNVMRSLQSGFCVYDS 164 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~-----------~~~i~~v~q~~~~~~~~~~~~tv~en 164 (273)
+|++++|+||||||||||+++|+|+++ ++|+|.+.|.++... +..+++++|++..++. .++++|
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~----~~v~~~ 176 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSA----ALAYDA 176 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHH----HHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHH----HHHHHH
Confidence 689999999999999999999999999 999999999987431 2458899998765433 355554
Q ss_pred ccCCHHH-HH-HHHHHhc------ccCCHHHHHHH---Hh-cCCCC--EEEEcCcCCCCCHHHHHHHHHhcCCcEEEEce
Q 024032 165 RGFNYNR-VH-EGLEELS------SWMSEGVHHNQ---RC-LRSDD--CALMKNDAEIDDLKSSPKYVLRRVDFAMVVSN 230 (273)
Q Consensus 165 ~~~~~~~-~~-~~l~~~~------~~LSgGqkq~~---r~-l~~p~--iLlLDEPts~LD~~~~l~~l~~~~g~tiiiv~ 230 (273)
....... .. ..++.++ ..++...+|+. |+ ..+|+ ++.|| |+++.+..++++.+.++.|.|+|+++
T Consensus 177 v~~~~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~~~~~~~~~~~~~~~t~iivT 255 (304)
T 1rj9_A 177 VQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQNGLEQAKKFHEAVGLTGVIVT 255 (304)
T ss_dssp HHHHHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTHHHHHHHHHHHHHCCSEEEEE
T ss_pred HHHHHhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHHHHHHHHHHHHHcCCcEEEEE
Confidence 2110000 00 0000011 11222334443 34 67898 77888 78888888888888765588999886
Q ss_pred eCC
Q 024032 231 IAE 233 (273)
Q Consensus 231 ~ad 233 (273)
+.|
T Consensus 256 h~d 258 (304)
T 1rj9_A 256 KLD 258 (304)
T ss_dssp CTT
T ss_pred CCc
Confidence 554
No 106
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.57 E-value=1.4e-17 Score=138.25 Aligned_cols=73 Identities=14% Similarity=0.070 Sum_probs=58.5
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeCCCCCccEEEEeccchhhhccCCcccccccc
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSR 165 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en~ 165 (273)
++++||++++|++++|+||||||||||+|+|+|+++++|+|.++|.++........+++|+..+ + .+|+.+|.
T Consensus 23 l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l~~~G~V~~~g~~i~~~~~~~~~~~q~~~l----~-~ltv~e~l 95 (158)
T 1htw_A 23 EILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTLVEEYNIAGKMIYHFDL----Y-RLADPEEL 95 (158)
T ss_dssp HHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHTTCCSCCCCCTTTCEEEEEETTEEEEEEEC----T-TCSCTTHH
T ss_pred HhccccccCCCCEEEEECCCCCCHHHHHHHHHHhCCCCCeEEECCEeeeeeccCCCcceecccc----c-cCCcHHHH
Confidence 9999999999999999999999999999999998888899999998774211100157777654 3 56887753
No 107
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.55 E-value=1.2e-16 Score=136.41 Aligned_cols=117 Identities=13% Similarity=0.070 Sum_probs=77.1
Q ss_pred EcCCcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeCCCCCccEEEEeccchhhhccCCccccccc--------cc
Q 024032 95 IPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDS--------RG 166 (273)
Q Consensus 95 i~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en--------~~ 166 (273)
.++|+++||+||||||||||+++|+|++.. .+++++|+...++ ...+++.++ ..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------~i~~v~~d~~~~~--~~~~~~~~~~~~~~~~~~~ 64 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------RVALLPMDHYYKD--LGHLPLEERLRVNYDHPDA 64 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------GEEEEEGGGCBCC--CTTSCHHHHHHSCTTSGGG
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------CeEEEecCccccC--cccccHHHhcCCCCCChhh
Confidence 578999999999999999999999997642 4677888765431 122344443 12
Q ss_pred CCHHHHHHHHHHhc---------ccCCHHHHHH--H-----Hh-cCCCCEEEEcCcCCC-------CCHH--HH----HH
Q 024032 167 FNYNRVHEGLEELS---------SWMSEGVHHN--Q-----RC-LRSDDCALMKNDAEI-------DDLK--SS----PK 216 (273)
Q Consensus 167 ~~~~~~~~~l~~~~---------~~LSgGqkq~--~-----r~-l~~p~iLlLDEPts~-------LD~~--~~----l~ 216 (273)
.+.+.+.+.++.++ ..+|+|+++. + ++ +.+|+++++||||++ ||+. .. ++
T Consensus 65 ~~~~~~~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~ 144 (211)
T 3asz_A 65 FDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLK 144 (211)
T ss_dssp BCHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHH
Confidence 34566777777665 5689997531 1 12 568888888999999 7875 22 22
Q ss_pred HHHhcCCcEEEEc
Q 024032 217 YVLRRVDFAMVVS 229 (273)
Q Consensus 217 ~l~~~~g~tiiiv 229 (273)
+..++.|.|++.+
T Consensus 145 r~~~~~g~t~~~~ 157 (211)
T 3asz_A 145 RDVLERGRSLEGV 157 (211)
T ss_dssp HHHHHSCCCHHHH
T ss_pred HHHHHhCCCHHHH
Confidence 2222238887765
No 108
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.54 E-value=1.9e-15 Score=140.80 Aligned_cols=123 Identities=15% Similarity=0.146 Sum_probs=75.8
Q ss_pred EEEEEeecCCeeeeccceeeeee-------EEcCCcEEEEEcCCCChHHHHHHHHhhCcc-C-ccEEEECCeeCCC-CCc
Q 024032 71 HKFLSYRSGDFWIPIGGIQKGGM-------DIPPVITILLMGFSGSGKSSLVNLMYSVLS-R-SGLVLFAQTSSGN-SSH 140 (273)
Q Consensus 71 ~v~~~y~~g~~~v~~~~L~~is~-------~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~-~G~I~i~g~~i~~-~~~ 140 (273)
.++++|.....+. |+++.+ .+.+|++++|+||||||||||+++|+|+++ + .|.|...+.++.. ...
T Consensus 93 ~~~iR~~~~~~~~----l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~ 168 (356)
T 3jvv_A 93 GAVFRTIPSKVLT----MEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHES 168 (356)
T ss_dssp EEEEEEECCSCCC----TTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCC
T ss_pred EEEEEECCCCCCC----HHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhc
Confidence 4455554333222 666666 678899999999999999999999999998 5 5777554433321 222
Q ss_pred cEEEEeccchhhhccCCcccccccccCCHHHHHHHHHHhcccCCHHHHHHHHhcCCCCEEEEcCcCCCCCHH--HHHHHH
Q 024032 141 TITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLK--SSPKYV 218 (273)
Q Consensus 141 ~i~~v~q~~~~~~~~~~~~tv~en~~~~~~~~~~~l~~~~~~LSgGqkq~~r~l~~p~iLlLDEPts~LD~~--~~l~~l 218 (273)
..+++.|..... + ...... ++ +..+..+|++|++|||+ |+. +.+.++
T Consensus 169 ~~~~v~q~~~~~----------~--~~~~~~---~L-------------a~aL~~~PdvillDEp~---d~e~~~~~~~~ 217 (356)
T 3jvv_A 169 KKCLVNQREVHR----------D--TLGFSE---AL-------------RSALREDPDIILVGEMR---DLETIRLALTA 217 (356)
T ss_dssp SSSEEEEEEBTT----------T--BSCHHH---HH-------------HHHTTSCCSEEEESCCC---SHHHHHHHHHH
T ss_pred cccceeeeeecc----------c--cCCHHH---HH-------------HHHhhhCcCEEecCCCC---CHHHHHHHHHH
Confidence 223344332210 0 001111 11 22336899999999999 666 344455
Q ss_pred HhcCCcEEEEc
Q 024032 219 LRRVDFAMVVS 229 (273)
Q Consensus 219 ~~~~g~tiiiv 229 (273)
... |+||+++
T Consensus 218 ~~~-G~~vl~t 227 (356)
T 3jvv_A 218 AET-GHLVFGT 227 (356)
T ss_dssp HHT-TCEEEEE
T ss_pred Hhc-CCEEEEE
Confidence 544 9999888
No 109
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.50 E-value=9.8e-15 Score=127.09 Aligned_cols=134 Identities=10% Similarity=0.095 Sum_probs=86.7
Q ss_pred eeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc---CccEEEECCeeCCC-CCccEEEEeccchhhhccCCcccc----cc
Q 024032 92 GMDIPPVITILLMGFSGSGKSSLVNLMYSVLS---RSGLVLFAQTSSGN-SSHTITMYMEEHNVMRSLQSGFCV----YD 163 (273)
Q Consensus 92 s~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~---~~G~I~i~g~~i~~-~~~~i~~v~q~~~~~~~~~~~~tv----~e 163 (273)
.-..++|++++|+||||||||||+++|+|+++ ..|.|.+.+.+... .+..++|++|++..|+.+ ++ .|
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~----~~~~~f~E 85 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEM----ISRDAFLE 85 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHH----HHTTCEEE
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHH----HhcCHHHH
Confidence 44679999999999999999999999999986 47889888876543 345688999988776543 44 44
Q ss_pred cccCCHHHHHHHHHHhcccCCHHHHHHH-HhcCCCCEEEEcCcCCCCCHH--HHHHHHHhcCCcEEEEcee-----CCEE
Q 024032 164 SRGFNYNRVHEGLEELSSWMSEGVHHNQ-RCLRSDDCALMKNDAEIDDLK--SSPKYVLRRVDFAMVVSNI-----AEIY 235 (273)
Q Consensus 164 n~~~~~~~~~~~l~~~~~~LSgGqkq~~-r~l~~p~iLlLDEPts~LD~~--~~l~~l~~~~g~tiiiv~~-----ad~i 235 (273)
|..+. + .+.|-.++.. .++..++++||| ||+. ..+.++..+ +.||+++.+ ..|+
T Consensus 86 ~~~~~-----------~-~~yg~~~~~v~~~l~~G~illLD-----LD~~~~~~i~~~l~~-~~tI~i~th~~~~l~~Rl 147 (219)
T 1s96_A 86 HAEVF-----------G-NYYGTSREAIEQVLATGVDVFLD-----IDWQGAQQIRQKMPH-ARSIFILPPSKIELDRRL 147 (219)
T ss_dssp EEEET-----------T-EEEEEEHHHHHHHHTTTCEEEEE-----CCHHHHHHHHHHCTT-CEEEEEECSSHHHHHHHH
T ss_pred HHHHH-----------h-ccCCCCHHHHHHHHhcCCeEEEE-----ECHHHHHHHHHHccC-CEEEEEECCCHHHHHHHH
Confidence 42211 0 0101011122 346678999999 9999 344444443 889988822 2343
Q ss_pred EEEeCCeEeeecChhhhc
Q 024032 236 KALKAGDSKPLDATKRLF 253 (273)
Q Consensus 236 ~vl~~G~i~~~g~~~~l~ 253 (273)
+..| .++++++.
T Consensus 148 --~~rG----~~~~e~i~ 159 (219)
T 1s96_A 148 --RGRG----QDSEEVIA 159 (219)
T ss_dssp --HTTS----CSCHHHHH
T ss_pred --HHcC----CCCHHHHH
Confidence 6666 46777764
No 110
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.47 E-value=1.6e-16 Score=147.76 Aligned_cols=153 Identities=12% Similarity=0.091 Sum_probs=91.0
Q ss_pred eeeeeeEEcC--CcEEEEEcCCCChHHHHHHHHhhCcc-Cc----cEEEEC----CeeCC----CCCccEEEEeccchhh
Q 024032 88 IQKGGMDIPP--VITILLMGFSGSGKSSLVNLMYSVLS-RS----GLVLFA----QTSSG----NSSHTITMYMEEHNVM 152 (273)
Q Consensus 88 L~~is~~i~~--Ge~~aivGpnGsGKSTLl~ll~gl~~-~~----G~I~i~----g~~i~----~~~~~i~~v~q~~~~~ 152 (273)
.+.|+++|++ |+.++|+||||||||||+++|+|+++ ++ |+|+++ |.++. +. +.+++++|+...
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~~~~~~~~-~~I~~~~q~~~~- 235 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDY-PQMALGHQRYID- 235 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTTSSCTTTH-HHHHHHHHHHHH-
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcccCChhHH-HHHHHHHHHHHH-
Confidence 5679999999 99999999999999999999999999 88 998863 43331 12 335665555442
Q ss_pred hccCCcccccccccC-CHHHHHHHHHHhcccCCHHHHHHH---Hh--cCCCCEEEEcC---cC------CCCCHH-----
Q 024032 153 RSLQSGFCVYDSRGF-NYNRVHEGLEELSSWMSEGVHHNQ---RC--LRSDDCALMKN---DA------EIDDLK----- 212 (273)
Q Consensus 153 ~~~~~~~tv~en~~~-~~~~~~~~l~~~~~~LSgGqkq~~---r~--l~~p~iLlLDE---Pt------s~LD~~----- 212 (273)
+..++.+|..+ ......... ..+|+|++|+. ++ ..+|++++||| |+ .++|+.
T Consensus 236 ----~~~t~~~nl~~~~~~~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l 307 (365)
T 1lw7_A 236 ----YAVRHSHKIAFIDTDFITTQA----FCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQF 307 (365)
T ss_dssp ----HHHHHCSSEEEESSCHHHHHH----HHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHH
T ss_pred ----HHHhccCCEEEEeCCchHHHH----HHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHH
Confidence 33477777432 111111111 12333443322 22 36899999999 65 578877
Q ss_pred -HHHHHHHhcCCcEEEEce-------eCCEEEEEeCCeEeeecChhhh
Q 024032 213 -SSPKYVLRRVDFAMVVSN-------IAEIYKALKAGDSKPLDATKRL 252 (273)
Q Consensus 213 -~~l~~l~~~~g~tiiiv~-------~ad~i~vl~~G~i~~~g~~~~l 252 (273)
..++++.++.+.+++++. +++++.++++ ++..++++++
T Consensus 308 ~~~l~~l~~~~~~~ililde~~~~~r~~~~i~~i~~--~l~~~~~~~~ 353 (365)
T 1lw7_A 308 QQLLKKLLDKYKVPYIEIESPSYLDRYNQVKAVIEK--VLNEEEISEL 353 (365)
T ss_dssp HHHHHHHHHGGGCCCEEEECSSHHHHHHHHHHHHHH--HTSCCCCSSC
T ss_pred HHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH--HhcccchhHh
Confidence 223343444478888872 3445555543 3444555554
No 111
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.47 E-value=2.3e-14 Score=138.21 Aligned_cols=131 Identities=13% Similarity=0.156 Sum_probs=89.2
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----------CCccEEEEeccchhhhcc
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----------SSHTITMYMEEHNVMRSL 155 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----------~~~~i~~v~q~~~~~~~~ 155 (273)
-+++||++++|++++|+||||||||||+++|+|+++ .+|+|.+.|.++.. .++.+++++|+...+
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~--- 359 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGAD--- 359 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCC---
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcC---
Confidence 468999999999999999999999999999999999 99999998776532 145688999876543
Q ss_pred CCcccccccccCCHH---------------HHHHHHHHhcccCCHHHHHHHHh-----cCCC-CEEEEcCcCCCCCHHHH
Q 024032 156 QSGFCVYDSRGFNYN---------------RVHEGLEELSSWMSEGVHHNQRC-----LRSD-DCALMKNDAEIDDLKSS 214 (273)
Q Consensus 156 ~~~~tv~en~~~~~~---------------~~~~~l~~~~~~LSgGqkq~~r~-----l~~p-~iLlLDEPts~LD~~~~ 214 (273)
+..++++|..+... .-...+. +|+ |+.++ ...| ++||..+|++|.|...+
T Consensus 360 -p~~tV~e~l~~a~~~~~DvVLIDTaGrl~~~~~lm~----EL~----kiv~iar~l~~~~P~evLLvLDattGq~al~~ 430 (503)
T 2yhs_A 360 -SASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLME----ELK----KIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQ 430 (503)
T ss_dssp -HHHHHHHHHHHHHHTTCSEEEECCCCSCCCHHHHHH----HHH----HHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHH
T ss_pred -HHHHHHHHHHHHHhcCCCEEEEeCCCccchhhhHHH----HHH----HHHHHHHHhccCCCCeeEEEecCcccHHHHHH
Confidence 23355554211000 0000111 111 22222 2346 45655669999988888
Q ss_pred HHHHHhcCCcEEEEce
Q 024032 215 PKYVLRRVDFAMVVSN 230 (273)
Q Consensus 215 l~~l~~~~g~tiiiv~ 230 (273)
++.+.+..+.|.+|++
T Consensus 431 ak~f~~~~~itgvIlT 446 (503)
T 2yhs_A 431 AKLFHEAVGLTGITLT 446 (503)
T ss_dssp HHHHHHHTCCSEEEEE
T ss_pred HHHHHhhcCCCEEEEE
Confidence 8888876688877773
No 112
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.46 E-value=1.4e-14 Score=149.02 Aligned_cols=138 Identities=11% Similarity=-0.009 Sum_probs=87.8
Q ss_pred HHHHHhhCcc-CccEEEECCeeCCCCCccEEEEeccchhhhccCCcccccccccC--CH---HHHHHHHHHhc-------
Q 024032 114 LVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGF--NY---NRVHEGLEELS------- 180 (273)
Q Consensus 114 Ll~ll~gl~~-~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en~~~--~~---~~~~~~l~~~~------- 180 (273)
...|..+.+. ..|+|.++|+++.+.... .+.+....+.. ..++..+.... .. .+..+.+..++
T Consensus 384 C~~C~g~rl~~~~~~V~i~G~~i~~~~~~--~v~~~l~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~L~~vgL~~l~l~ 459 (916)
T 3pih_A 384 CSVCGGRRLNREALSVKINGLNIHEFTEL--SISEELEFLKN--LNLTEREREIVGELLKEIEKRLEFLVDVGLEYLTLS 459 (916)
T ss_dssp CTTTCSCCBCTTGGGEEETTEEHHHHHHS--BHHHHHHHHHS--CCCCTTTTTTHHHHHHHHHHHHHHHHTTTCTTCBTT
T ss_pred chhcccccCChHhcCcEECCccHHHhhhC--CHHHHHHHHHh--ccCcHHHHHHHHhhHHHHHHHHHHHHHcCCcccccc
Confidence 3445555666 889999999987532110 00111111111 11232222110 01 12223444444
Q ss_pred ---ccCCHHHHHHHH---h-cCCCC--EEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEE
Q 024032 181 ---SWMSEGVHHNQR---C-LRSDD--CALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKAL 238 (273)
Q Consensus 181 ---~~LSgGqkq~~r---~-l~~p~--iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl 238 (273)
.+|||||+||++ + +++|+ +|||||||+|||+. +.++++.++ |.|||+| ..||+|++|
T Consensus 460 r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~-G~TvivVtHd~~~~~~aD~ii~l 538 (916)
T 3pih_A 460 RSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDL-GNTVIVVEHDEEVIRNADHIIDI 538 (916)
T ss_dssp SBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTT-TCEEEEECCCHHHHHTCSEEEEE
T ss_pred CCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHhCCEEEEE
Confidence 689999999873 3 56666 99999999999999 335556544 9999999 348999999
Q ss_pred ------eCCeEeeecChhhhccCh
Q 024032 239 ------KAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 239 ------~~G~i~~~g~~~~l~~~~ 256 (273)
++|++++.|+++++++.+
T Consensus 539 gpgag~~~G~iv~~G~~~e~~~~~ 562 (916)
T 3pih_A 539 GPGGGTNGGRVVFQGTVDELLKNP 562 (916)
T ss_dssp ESSSGGGCSEEEEEECHHHHHHSC
T ss_pred cCCcccCCCEEEEeechhhhhcCc
Confidence 899999999999997643
No 113
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.45 E-value=2.7e-14 Score=135.69 Aligned_cols=144 Identities=15% Similarity=0.123 Sum_probs=87.6
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcE--EEEEcCCCChHHHHHHHHhhCccCccEEEECCeeCC-----CC
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVIT--ILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSG-----NS 138 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~--~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i~-----~~ 138 (273)
.+++++ +++| ++. . |+++||++++|++ +||+||||||||||+|+|+|+. ++|.++. ..
T Consensus 16 ~l~~~~-~~~y--~~~----~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~-------l~g~~~~~~~~~~~ 80 (427)
T 2qag_B 16 TVPLAG-HVGF--DSL----P-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK-------FEGEPATHTQPGVQ 80 (427)
T ss_dssp -CCCCC-CC-C--C------C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC-------C-------CCSSCE
T ss_pred eEEEee-EEEE--CCe----e-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc-------ccCCcCCCCCccce
Confidence 455666 5666 331 2 8999999999999 9999999999999999999984 2222221 23
Q ss_pred CccEEEEeccchhhhccCCcccccccccCCH----------------HHHHHHHHHh-c--c------------------
Q 024032 139 SHTITMYMEEHNVMRSLQSGFCVYDSRGFNY----------------NRVHEGLEEL-S--S------------------ 181 (273)
Q Consensus 139 ~~~i~~v~q~~~~~~~~~~~~tv~en~~~~~----------------~~~~~~l~~~-~--~------------------ 181 (273)
++.+++++|+..++ ..+||.||.++.. ..+.+.+... + .
T Consensus 81 ~~~i~~v~Q~~~l~----~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~ 156 (427)
T 2qag_B 81 LQSNTYDLQESNVR----LKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIA 156 (427)
T ss_dssp EEEEEEEEEC--CE----EEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEEC
T ss_pred EeeEEEEeecCccc----cccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEe
Confidence 45688999987753 3458888865421 1222233332 1 0
Q ss_pred ----cCCHHHHHHHHhc-CCCCEEEEcCcCCCCCHHHH------HHH-HHhcCCcEEEEc
Q 024032 182 ----WMSEGVHHNQRCL-RSDDCALMKNDAEIDDLKSS------PKY-VLRRVDFAMVVS 229 (273)
Q Consensus 182 ----~LSgGqkq~~r~l-~~p~iLlLDEPts~LD~~~~------l~~-l~~~~g~tiiiv 229 (273)
.|+.....-.+++ .+++++++|+|+..|.+.+. ++. +. ..|.+|+.+
T Consensus 157 d~~~~l~~~Dieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~-~~gi~I~~i 215 (427)
T 2qag_B 157 PTGHSLKSLDLVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELV-SNGVQIYQF 215 (427)
T ss_dssp CCC---CHHHHHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHB-TTBCCCCCC
T ss_pred CCCCCCCHHHHHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHH-HcCCcEEec
Confidence 2333332222333 57899999999999998732 333 43 348888877
No 114
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.43 E-value=1.1e-14 Score=135.49 Aligned_cols=126 Identities=10% Similarity=0.035 Sum_probs=79.6
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCC---CCCccEEEEe-ccchhhhccCCccccc
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSG---NSSHTITMYM-EEHNVMRSLQSGFCVY 162 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~---~~~~~i~~v~-q~~~~~~~~~~~~tv~ 162 (273)
++++||.+++|++++|+||||||||||+++|+|+++ ++|.|.++|..-. ..++.+++++ |+...- .++..|++
T Consensus 165 ~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~--~~~~~t~~ 242 (361)
T 2gza_A 165 MSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEE--ENAPVTAA 242 (361)
T ss_dssp HHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC------------CCHH
T ss_pred HHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccc--cccccCHH
Confidence 399999999999999999999999999999999999 9999999875321 2456677777 543310 00111221
Q ss_pred ccccCCHHHHHHHHHHhcccCCHHHHHHHHhcCCCCEEEEcCcCCCCCHHHHHHHHHhcCCcEEEEc-------eeCCEE
Q 024032 163 DSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVS-------NIAEIY 235 (273)
Q Consensus 163 en~~~~~~~~~~~l~~~~~~LSgGqkq~~r~l~~p~iLlLDEPts~LD~~~~l~~l~~~~g~tiiiv-------~~ad~i 235 (273)
+ .+. .....+|+.+++||+... ...+.++.+... ..|++.+ ..++|+
T Consensus 243 ~-----------~i~-------------~~l~~~pd~~l~~e~r~~-~~~~~l~~l~~g-~~~~l~t~H~~~~~~~~~Rl 296 (361)
T 2gza_A 243 T-----------LLR-------------SCLRMKPTRILLAELRGG-EAYDFINVAASG-HGGSITSCHAGSCELTFERL 296 (361)
T ss_dssp H-----------HHH-------------HHTTSCCSEEEESCCCST-HHHHHHHHHHTT-CCSCEEEEECSSHHHHHHHH
T ss_pred H-----------HHH-------------HHHhcCCCEEEEcCchHH-HHHHHHHHHhcC-CCeEEEEECCCCHHHHHHHH
Confidence 1 111 111358999999999752 233556666542 2344444 223555
Q ss_pred EEEeCC
Q 024032 236 KALKAG 241 (273)
Q Consensus 236 ~vl~~G 241 (273)
..+..|
T Consensus 297 ~~l~~~ 302 (361)
T 2gza_A 297 ALMVLQ 302 (361)
T ss_dssp HHHHTT
T ss_pred HHHHhc
Confidence 555554
No 115
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.40 E-value=2e-13 Score=127.67 Aligned_cols=102 Identities=15% Similarity=0.143 Sum_probs=69.7
Q ss_pred EcCCcEEEEEcCCCChHHHHHHHHhhCcc-C-ccEEEECCeeCCC-CCccEEEEeccchhhhccCCcccccccccCCHHH
Q 024032 95 IPPVITILLMGFSGSGKSSLVNLMYSVLS-R-SGLVLFAQTSSGN-SSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNR 171 (273)
Q Consensus 95 i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~-~G~I~i~g~~i~~-~~~~i~~v~q~~~~~~~~~~~~tv~en~~~~~~~ 171 (273)
+++|++++|+||||||||||+++|+|+++ + +|.|.+.+.++.. .+..+++++|...- . +
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g-------~---~-------- 194 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVG-------E---D-------- 194 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBT-------T---T--------
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecC-------C---C--------
Confidence 78999999999999999999999999998 6 8999776665532 34456666663210 0 0
Q ss_pred HHHHHHHhcccCCHHHHHHHHhcCCCCEEEEcCcCCCCCHHHH---HHHHHhcCCcEEEEc
Q 024032 172 VHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSS---PKYVLRRVDFAMVVS 229 (273)
Q Consensus 172 ~~~~l~~~~~~LSgGqkq~~r~l~~p~iLlLDEPts~LD~~~~---l~~l~~~~g~tiiiv 229 (273)
...|++.- +..+..+|+++++|||+ |+... ++. . ..|.+++.+
T Consensus 195 --------~~~~~~~l--~~~L~~~pd~illdE~~---d~e~~~~~l~~-~-~~g~~vi~t 240 (372)
T 2ewv_A 195 --------TKSFADAL--RAALREDPDVIFVGEMR---DLETVETALRA-A-ETGHLVFGT 240 (372)
T ss_dssp --------BSCSHHHH--HHHTTSCCSEEEESCCC---SHHHHHHHHHH-H-TTTCEEEEC
T ss_pred --------HHHHHHHH--HHHhhhCcCEEEECCCC---CHHHHHHHHHH-H-hcCCEEEEE
Confidence 01122222 12224699999999999 77633 333 2 338888877
No 116
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.40 E-value=1.6e-13 Score=126.36 Aligned_cols=143 Identities=12% Similarity=0.100 Sum_probs=91.8
Q ss_pred EEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCC---------Cc--cEEEEeccchhhhccCCcccc
Q 024032 94 DIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNS---------SH--TITMYMEEHNVMRSLQSGFCV 161 (273)
Q Consensus 94 ~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~---------~~--~i~~v~q~~~~~~~~~~~~tv 161 (273)
..++|++++|+||||||||||++.|+|+++ .+|+|.+.|.++... ++ .+.+++|.....+ ..++
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p----~~~v 200 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADP----AAVA 200 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCH----HHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCH----HHHH
Confidence 347899999999999999999999999999 999999999987531 22 2447777766533 3366
Q ss_pred cccccCCHHHHHHHHHHhcccCCHHHH-------H---HHHh-cCCCCEEEEcCcCCCCCHHHHHHHHHhcCCcEEEEce
Q 024032 162 YDSRGFNYNRVHEGLEELSSWMSEGVH-------H---NQRC-LRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSN 230 (273)
Q Consensus 162 ~en~~~~~~~~~~~l~~~~~~LSgGqk-------q---~~r~-l~~p~iLlLDEPts~LD~~~~l~~l~~~~g~tiiiv~ 230 (273)
++|....... ..+.+.-.-+|..+ + ..++ ..++++++||. +++.|..++++.+.++.+.|+++++
T Consensus 201 ~e~l~~~~~~---~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa-~t~~~~~~~~~~~~~~~~it~iilT 276 (328)
T 3e70_C 201 YDAIQHAKAR---GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDA-LAGNAIVEQARQFNEAVKIDGIILT 276 (328)
T ss_dssp HHHHHHHHHH---TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEG-GGTTHHHHHHHHHHHHSCCCEEEEE
T ss_pred HHHHHHHHhc---cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEec-HHHHHHHHHHHHHHHhcCCCEEEEe
Confidence 6653211000 00000000011100 0 1133 45778899995 4567888888888876688888883
Q ss_pred eC-----------------CEEEEEeCCeEe
Q 024032 231 IA-----------------EIYKALKAGDSK 244 (273)
Q Consensus 231 ~a-----------------d~i~vl~~G~i~ 244 (273)
.. -.|.++..|+-+
T Consensus 277 KlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v 307 (328)
T 3e70_C 277 KLDADARGGAALSISYVIDAPILFVGVGQGY 307 (328)
T ss_dssp CGGGCSCCHHHHHHHHHHTCCEEEEECSSST
T ss_pred CcCCccchhHHHHHHHHHCCCEEEEeCCCCc
Confidence 32 256777777654
No 117
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.40 E-value=1e-12 Score=111.78 Aligned_cols=132 Identities=11% Similarity=0.034 Sum_probs=81.5
Q ss_pred eeeeee-EEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEEEEeccchhhhccCCcccccccc
Q 024032 88 IQKGGM-DIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSR 165 (273)
Q Consensus 88 L~~is~-~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en~ 165 (273)
|+.+.. .+++|++++|+||||||||||++.+++ . ..+.++++...-.. ...+. ...+..
T Consensus 9 LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~~~~-----------~~~~~------~~~~~~ 69 (220)
T 2cvh_A 9 LDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEGGFS-----------PERLV------QMAETR 69 (220)
T ss_dssp HHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSCCCC-----------HHHHH------HHHHTT
T ss_pred HHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCCCCC-----------HHHHH------HHHHhc
Confidence 666665 689999999999999999999999999 5 55555554332000 00000 001111
Q ss_pred cCCHHHHHHHHHHhc-ccCCHHHHHHH-----Hh-cC-CCCEEEEcCcCCCCCHH-----------HH---HHHHHhcCC
Q 024032 166 GFNYNRVHEGLEELS-SWMSEGVHHNQ-----RC-LR-SDDCALMKNDAEIDDLK-----------SS---PKYVLRRVD 223 (273)
Q Consensus 166 ~~~~~~~~~~l~~~~-~~LSgGqkq~~-----r~-l~-~p~iLlLDEPts~LD~~-----------~~---l~~l~~~~g 223 (273)
+.+.+. .++.+. ..++++++|++ ++ +. +|+++++|||++.+|+. +. ++.+.++.|
T Consensus 70 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~ 146 (220)
T 2cvh_A 70 GLNPEE---ALSRFILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHN 146 (220)
T ss_dssp TCCHHH---HHHHEEEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHT
T ss_pred CCChHH---HhhcEEEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcC
Confidence 222222 233322 45566654322 22 44 49999999999999873 12 455655558
Q ss_pred cEEEEc----e-----------------eCCEEEEEeCC
Q 024032 224 FAMVVS----N-----------------IAEIYKALKAG 241 (273)
Q Consensus 224 ~tiiiv----~-----------------~ad~i~vl~~G 241 (273)
.|+|++ . .||.+++|+..
T Consensus 147 ~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 147 IPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp CCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred CEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 898888 1 37899998754
No 118
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.37 E-value=1.2e-12 Score=134.78 Aligned_cols=74 Identities=9% Similarity=0.016 Sum_probs=62.6
Q ss_pred ccCCHHHHHHHHh----cCC--CCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEE---
Q 024032 181 SWMSEGVHHNQRC----LRS--DDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKAL--- 238 (273)
Q Consensus 181 ~~LSgGqkq~~r~----l~~--p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl--- 238 (273)
.+|||||+||+++ ..+ |++|||||||++||+. +.++++.+. |.|||+| ..||+|++|
T Consensus 520 ~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~-G~TVIvVeHdl~~i~~ADrIi~Lgp~ 598 (993)
T 2ygr_A 520 ATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDL-GNTLIVVEHDEDTIEHADWIVDIGPG 598 (993)
T ss_dssp GGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECCCHHHHHTCSEEEEECSS
T ss_pred ccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHc-CCEEEEECCCHHHHHhCCEEEEecCc
Confidence 6799999998744 455 5899999999999999 345667654 9999999 558999999
Q ss_pred ---eCCeEeeecChhhhccC
Q 024032 239 ---KAGDSKPLDATKRLFSA 255 (273)
Q Consensus 239 ---~~G~i~~~g~~~~l~~~ 255 (273)
++|++++.|+++++...
T Consensus 599 aG~~gG~iv~~G~~~e~~~~ 618 (993)
T 2ygr_A 599 AGEHGGRIVHSGPYDELLRN 618 (993)
T ss_dssp SGGGCCSCCEEECHHHHHHC
T ss_pred cccCCCEEEEeeCHHHhhhh
Confidence 79999999999998764
No 119
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.37 E-value=1.3e-12 Score=134.39 Aligned_cols=74 Identities=9% Similarity=0.074 Sum_probs=62.4
Q ss_pred ccCCHHHHHHHHh----cCC--CCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEE---
Q 024032 181 SWMSEGVHHNQRC----LRS--DDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKAL--- 238 (273)
Q Consensus 181 ~~LSgGqkq~~r~----l~~--p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl--- 238 (273)
.+|||||+||+++ ..+ |++|||||||++|||. +.++++.+ .|.|||+| ..||+|++|
T Consensus 503 ~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~-~G~TVIvVeHdl~~i~~ADrIi~Lgpg 581 (972)
T 2r6f_A 503 GTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRD-LGNTLIVVEHDEDTMLAADYLIDIGPG 581 (972)
T ss_dssp GGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHT-TTCEEEEECCCHHHHHSCSEEEEECSS
T ss_pred ccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHhCCEEEEeCCC
Confidence 6899999998744 455 5999999999999998 34566754 49999999 558999999
Q ss_pred ---eCCeEeeecChhhhccC
Q 024032 239 ---KAGDSKPLDATKRLFSA 255 (273)
Q Consensus 239 ---~~G~i~~~g~~~~l~~~ 255 (273)
++|++++.|++++++..
T Consensus 582 aG~~gG~iv~~G~~~e~~~~ 601 (972)
T 2r6f_A 582 AGIHGGEVVAAGTPEEVMND 601 (972)
T ss_dssp SGGGCCSEEEEECTTTTTTC
T ss_pred ccCCCCEEEEecCHHHHHhh
Confidence 79999999999998764
No 120
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.36 E-value=4.6e-13 Score=115.69 Aligned_cols=41 Identities=12% Similarity=0.142 Sum_probs=34.2
Q ss_pred EEcCCcEEEEEcCCCChHHHHHHHHhh--Ccc------CccEEEECCee
Q 024032 94 DIPPVITILLMGFSGSGKSSLVNLMYS--VLS------RSGLVLFAQTS 134 (273)
Q Consensus 94 ~i~~Ge~~aivGpnGsGKSTLl~ll~g--l~~------~~G~I~i~g~~ 134 (273)
-+++|++++|+||||||||||++.|++ +.+ ..|.+++++.+
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 488999999999999999999999999 443 35677777665
No 121
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.36 E-value=1.6e-12 Score=106.59 Aligned_cols=62 Identities=11% Similarity=0.114 Sum_probs=48.2
Q ss_pred ccCCHHHHHHH---------Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEE
Q 024032 181 SWMSEGVHHNQ---------RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKA 237 (273)
Q Consensus 181 ~~LSgGqkq~~---------r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~v 237 (273)
.+||||||||. |+ +.+|+++||||||++||+. +.+..+.++ |.|||++ ..||++++
T Consensus 56 ~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiiivsH~~~~~~~~d~ii~ 134 (148)
T 1f2t_B 56 TFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK-IPQVILVSHDEELKDAADHVIR 134 (148)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGG-SSEEEEEESCGGGGGGCSEEEE
T ss_pred hHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHcc-CCEEEEEEChHHHHHhCCEEEE
Confidence 67999999986 23 4789999999999999999 223444444 7899888 56899999
Q ss_pred E--eCCeE
Q 024032 238 L--KAGDS 243 (273)
Q Consensus 238 l--~~G~i 243 (273)
| ++|..
T Consensus 135 l~~~~g~s 142 (148)
T 1f2t_B 135 ISLENGSS 142 (148)
T ss_dssp EEEETTEE
T ss_pred EEcCCCeE
Confidence 9 45643
No 122
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.32 E-value=9.9e-14 Score=126.85 Aligned_cols=123 Identities=16% Similarity=0.221 Sum_probs=78.5
Q ss_pred CcEEEEEcCCCChHHHHHHHHhhCc--------c-CccEEEECCeeCCCCC--------------------ccEEEE---
Q 024032 98 VITILLMGFSGSGKSSLVNLMYSVL--------S-RSGLVLFAQTSSGNSS--------------------HTITMY--- 145 (273)
Q Consensus 98 Ge~~aivGpnGsGKSTLl~ll~gl~--------~-~~G~I~i~g~~i~~~~--------------------~~i~~v--- 145 (273)
-++++|+|+||||||||+|.|.|+. . +.|+|.++|.++.... +.++++
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~ 83 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDN 83 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHH
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhH
Confidence 3589999999999999999999986 6 8999999998875321 123333
Q ss_pred eccchhhhccCCcccccccccCCH-HHHHHHH------HH---hc---------------ccCCHHHHHHHHh----cCC
Q 024032 146 MEEHNVMRSLQSGFCVYDSRGFNY-NRVHEGL------EE---LS---------------SWMSEGVHHNQRC----LRS 196 (273)
Q Consensus 146 ~q~~~~~~~~~~~~tv~en~~~~~-~~~~~~l------~~---~~---------------~~LSgGqkq~~r~----l~~ 196 (273)
+|+.. ..+..++.||.++.. ..+...+ .. +. .+||+||+|+..+ +.+
T Consensus 84 ~q~~~----~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~~ls~g~~Q~~~ad~ill~k 159 (318)
T 1nij_A 84 LDKGN----IQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLTK 159 (318)
T ss_dssp HHHTS----CCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHHTCSEEEEEC
T ss_pred HhcCC----CCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHhhchHHHHHHHhCCEEEEEC
Confidence 23332 134668888866531 2211111 11 00 3689999888733 467
Q ss_pred CCEEEEcCcCCCCCHHHHHHHHHhcCCcEEEEcee
Q 024032 197 DDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNI 231 (273)
Q Consensus 197 p~iLlLDEPts~LD~~~~l~~l~~~~g~tiiiv~~ 231 (273)
|+++ ||| -...+.++.+. . +.||+++.+
T Consensus 160 ~dl~--de~---~~l~~~l~~l~-~-~~~ii~~sh 187 (318)
T 1nij_A 160 TDVA--GEA---EKLHERLARIN-A-RAPVYTVTH 187 (318)
T ss_dssp TTTC--SCT---HHHHHHHHHHC-S-SSCEEECCS
T ss_pred cccC--CHH---HHHHHHHHHhC-C-CCeEEEecc
Confidence 7766 887 11114455554 2 788888843
No 123
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.31 E-value=5.1e-12 Score=128.98 Aligned_cols=74 Identities=14% Similarity=0.040 Sum_probs=62.6
Q ss_pred ccCCHHHHHHHHh----cCCC--CEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEE---
Q 024032 181 SWMSEGVHHNQRC----LRSD--DCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKAL--- 238 (273)
Q Consensus 181 ~~LSgGqkq~~r~----l~~p--~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl--- 238 (273)
.+|||||+||+++ ..+| ++|||||||++||+. +.++.+.+. |.|||+| ..||+|++|
T Consensus 378 ~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~-G~TVIvVeHdl~~l~~aD~ii~lgpg 456 (842)
T 2vf7_A 378 PTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRG-GNSLFVVEHDLDVIRRADWLVDVGPE 456 (842)
T ss_dssp GGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTT-TCEEEEECCCHHHHTTCSEEEEECSS
T ss_pred CcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHc-CCEEEEEcCCHHHHHhCCEEEEeCCC
Confidence 6899999998743 5677 599999999999999 345667654 9999999 558999999
Q ss_pred ---eCCeEeeecChhhhccC
Q 024032 239 ---KAGDSKPLDATKRLFSA 255 (273)
Q Consensus 239 ---~~G~i~~~g~~~~l~~~ 255 (273)
++|++++.|+++++...
T Consensus 457 aG~~~G~iv~~g~~~~~~~~ 476 (842)
T 2vf7_A 457 AGEKGGEILYSGPPEGLKHV 476 (842)
T ss_dssp SGGGCCSEEEEECGGGGGGC
T ss_pred cccCCCEEEEecCHHHHHhc
Confidence 79999999999998764
No 124
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.31 E-value=1.9e-12 Score=107.70 Aligned_cols=35 Identities=17% Similarity=0.294 Sum_probs=30.9
Q ss_pred eeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-Ccc
Q 024032 92 GMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSG 126 (273)
Q Consensus 92 s~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G 126 (273)
+|++++|+.++|+||||+|||||+++|++.+. .+|
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g 67 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKG 67 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSC
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcC
Confidence 46678899999999999999999999999876 555
No 125
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.30 E-value=2.9e-14 Score=121.62 Aligned_cols=130 Identities=16% Similarity=0.161 Sum_probs=72.1
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhhCcc--------------CccEEEECCeeCCCCCccEEEEeccchhhhc------c
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYSVLS--------------RSGLVLFAQTSSGNSSHTITMYMEEHNVMRS------L 155 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~gl~~--------------~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~------~ 155 (273)
++|++++|+||||||||||+++|+|+++ ..|. ++|.+ +.++....+.. +
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~---------~~~~~~~~~~~~i~~~~~ 70 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKD---------YYFVTREMMQRDIAAGDF 70 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTT---------BEECCHHHHHHHHHHTCE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCce---------EEEccHHHHHHHHHcCCC
Confidence 5799999999999999999999999874 2333 23332 22222221111 1
Q ss_pred CCccccccc-ccCCHHHHHHHHHHhc---ccC-CHHHHHHH------H-h-cCCCCEEEEcCcCCCCCHH--HH----HH
Q 024032 156 QSGFCVYDS-RGFNYNRVHEGLEELS---SWM-SEGVHHNQ------R-C-LRSDDCALMKNDAEIDDLK--SS----PK 216 (273)
Q Consensus 156 ~~~~tv~en-~~~~~~~~~~~l~~~~---~~L-SgGqkq~~------r-~-l~~p~iLlLDEPts~LD~~--~~----l~ 216 (273)
.+..++.+| .+.+.+.+.++++... ..+ -.|-++.. + + +.+|++++|||+|+++|.. +. +.
T Consensus 71 l~~~~~~~n~~g~~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~ 150 (198)
T 1lvg_A 71 IEHAEFSGNLYGTSKEAVRAVQAMNRICVLDVDLQGVRSIKKTDLCPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLA 150 (198)
T ss_dssp EEEEEETTEEEEEEHHHHHHHHHTTCEEEEECCHHHHHHHTTSSCCCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHH
T ss_pred EeeeeecCccCCCCHHHHHHHHHcCCcEEEECCHHHHHHHHhcCCCcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 233345555 2445667777776422 111 12332211 2 2 5677788889999988875 22 22
Q ss_pred HHHhcCCcEEEEc---eeCCEEEEEeC
Q 024032 217 YVLRRVDFAMVVS---NIAEIYKALKA 240 (273)
Q Consensus 217 ~l~~~~g~tiiiv---~~ad~i~vl~~ 240 (273)
...+ + +.+. ..+|+|+++++
T Consensus 151 ~~~~--~--~~~a~~~~~~D~iivnd~ 173 (198)
T 1lvg_A 151 AART--D--MESSKEPGLFDLVIINDD 173 (198)
T ss_dssp HHHH--H--TTGGGSTTTCSEEEECSS
T ss_pred HHHH--H--HHHhhccCCceEEEECCC
Confidence 2222 1 1222 56899888764
No 126
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.29 E-value=4e-12 Score=107.23 Aligned_cols=107 Identities=11% Similarity=0.163 Sum_probs=66.4
Q ss_pred eeEEcCCcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeCCC-----CCccEEEEeccchhhhccCCccccccc--
Q 024032 92 GMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDS-- 164 (273)
Q Consensus 92 s~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en-- 164 (273)
|+++++|++++|+||||||||||+++|+|+++ .+.+.+..+.. .+..+++++|++..++.+ ++.++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 73 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA---EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAM----VKEGAFL 73 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS---SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHH----HHHTCEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC---CeEEeceeccCCCchhHhcCceEEeccHHHHHHH----HhcCcEE
Confidence 57889999999999999999999999999875 46666655432 344578899988766543 33322
Q ss_pred ---------ccCCHHHHHHHHHHhc---ccCC-HHHHHHHHhcCCCCEEEEcCc
Q 024032 165 ---------RGFNYNRVHEGLEELS---SWMS-EGVHHNQRCLRSDDCALMKND 205 (273)
Q Consensus 165 ---------~~~~~~~~~~~l~~~~---~~LS-gGqkq~~r~l~~p~iLlLDEP 205 (273)
.+...+.+.+.++.-. ..++ .|..+......++.+++++.|
T Consensus 74 ~~~~~~~~~~~~~~~~i~~~l~~g~~vi~d~~~~~~~~~~~~~~~~~~v~~~~~ 127 (205)
T 3tr0_A 74 EHATIYERHYGTEKDWVLRQLKAGRDVLLEIDWQGARQIRELFPPALSIFILPP 127 (205)
T ss_dssp EEEEETTEEEEEEHHHHHHHHHTTCEEEEECCHHHHHHHHHHCTTCEEEEEECS
T ss_pred eeeeeecccccchHHHHHHHHHcCCeEEEEECHHHHHHHHHhCCCcEEEEEECc
Confidence 1234456666665532 1122 133333333556777777776
No 127
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.28 E-value=3.1e-14 Score=124.77 Aligned_cols=38 Identities=21% Similarity=0.378 Sum_probs=34.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHh---hCcc-CccEEEECCee
Q 024032 97 PVITILLMGFSGSGKSSLVNLMY---SVLS-RSGLVLFAQTS 134 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~---gl~~-~~G~I~i~g~~ 134 (273)
++++++|+||||||||||+++|+ |+.. +.|+|.++|.+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~ 67 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIK 67 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHh
Confidence 47899999999999999999999 9988 89999877654
No 128
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.25 E-value=1.5e-12 Score=117.84 Aligned_cols=101 Identities=15% Similarity=-0.015 Sum_probs=68.6
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeCCCCCccEEEEeccchhhhccCCccccccc-----------
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDS----------- 164 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en----------- 164 (273)
+++.++||+||+|||||||.+.|.+++...|. . ++.+.+|.|+...++ .++++|
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~------~----~~~~~iv~~D~f~~~-----~~~~~~l~~~~~~~~l~ 93 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYG------G----EKSIGYASIDDFYLT-----HEDQLKLNEQFKNNKLL 93 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHG------G----GSCEEEEEGGGGBCC-----HHHHHHHHHHTTTCGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCC------C----CceEEEeccccccCC-----hHHHHHHhccccccchh
Confidence 35669999999999999999999999873230 1 233444477776432 123222
Q ss_pred -----c-cCCHHHHHHHHHHhc-----------------ccCCHHHHHHH-----HhcCCCCEEEEcCcCCCCCHH
Q 024032 165 -----R-GFNYNRVHEGLEELS-----------------SWMSEGVHHNQ-----RCLRSDDCALMKNDAEIDDLK 212 (273)
Q Consensus 165 -----~-~~~~~~~~~~l~~~~-----------------~~LSgGqkq~~-----r~l~~p~iLlLDEPts~LD~~ 212 (273)
+ ..+.+.+.+.++.+. ..+||||+||. +++ +|+|||+|||++++|+.
T Consensus 94 ~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~-~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 94 QGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL-PVDIFILEGWFLGFNPI 168 (290)
T ss_dssp SSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES-SCSEEEEEESSTTCCCC
T ss_pred hhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc-CCCEEEEeCccccCCcc
Confidence 1 123455555555542 46899998864 236 99999999999999984
No 129
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.24 E-value=5.8e-12 Score=121.39 Aligned_cols=48 Identities=23% Similarity=0.279 Sum_probs=46.3
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCC
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSG 136 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~ 136 (273)
|+++||+|++ ++++|+||||||||||+++|+|+++ ++|+|.++|+++.
T Consensus 20 l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 20 FFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEA 68 (483)
T ss_dssp EEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSC
T ss_pred ccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcc
Confidence 9999999999 9999999999999999999999999 9999999998774
No 130
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.22 E-value=1.2e-11 Score=101.08 Aligned_cols=35 Identities=23% Similarity=0.257 Sum_probs=30.4
Q ss_pred ceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCccCcc
Q 024032 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSG 126 (273)
Q Consensus 87 ~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G 126 (273)
+|+++ +|+.++|+||||+|||||+++|++.+..+|
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g 64 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALEAG 64 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHTTT
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 36666 899999999999999999999999876445
No 131
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.20 E-value=3.5e-13 Score=113.06 Aligned_cols=91 Identities=15% Similarity=0.101 Sum_probs=56.1
Q ss_pred cEEEEEcCCCChHHHHHHHHhhCcc-C---ccEEEECCeeCCC--------CC-ccEE----EEeccchhhhccCCcccc
Q 024032 99 ITILLMGFSGSGKSSLVNLMYSVLS-R---SGLVLFAQTSSGN--------SS-HTIT----MYMEEHNVMRSLQSGFCV 161 (273)
Q Consensus 99 e~~aivGpnGsGKSTLl~ll~gl~~-~---~G~I~i~g~~i~~--------~~-~~i~----~v~q~~~~~~~~~~~~tv 161 (273)
++++|+|+||||||||+++|+|+++ . .|.|.++|.++.+ ++ +.++ ++.|+...| +
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~--------i 74 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF--------I 74 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE--------E
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE--------E
Confidence 5899999999999999999999998 7 8999999987432 22 2455 566665542 1
Q ss_pred cccccCCHH--HHHHHHHH-hc-------ccCCHHHHHHH---Hh-cCCCCE
Q 024032 162 YDSRGFNYN--RVHEGLEE-LS-------SWMSEGVHHNQ---RC-LRSDDC 199 (273)
Q Consensus 162 ~en~~~~~~--~~~~~l~~-~~-------~~LSgGqkq~~---r~-l~~p~i 199 (273)
.+ ..... .+.+.++. +. ..|||||+||. |+ +.+|++
T Consensus 75 ~~--~~~~~~a~l~~~i~~~l~g~dt~i~EglSgGq~qri~lARall~~p~i 124 (171)
T 2f1r_A 75 RR--VSEEEGNDLDWIYERYLSDYDLVITEGFSKAGKDRIVVVKKPEEVEHF 124 (171)
T ss_dssp EE--CCHHHHTCHHHHHHHHTTTCSEEEEESCGGGCCCEEEECSSGGGGGGG
T ss_pred ec--CChhhhhCHHHHHHhhCCCCCEEEECCcCCCCCcEEEEEecccCCCcc
Confidence 21 00111 33444444 31 55999999875 33 556654
No 132
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.18 E-value=4.2e-13 Score=127.36 Aligned_cols=41 Identities=27% Similarity=0.274 Sum_probs=38.1
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCC
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSG 136 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~ 136 (273)
++|++++|+||||||||||+++|+|+++ ++|.|.+.+.++.
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie 206 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIE 206 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCC
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccch
Confidence 7899999999999999999999999998 8999999887763
No 133
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.18 E-value=2.6e-11 Score=114.93 Aligned_cols=126 Identities=16% Similarity=0.155 Sum_probs=79.6
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeCCCCCccEEEEeccchhhhccCCccccccccc-
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRG- 166 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en~~- 166 (273)
-++++|+++.|+.++|||+||||||||+++|+|..+ .+.+.+...+...++++.++.. ..++++|+++
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~-----~i~~~~ftTl~p~~G~V~~~~~------~~~~l~DtpGl 215 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP-----KIAPYPFTTLSPNLGVVEVSEE------ERFTLADIPGI 215 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC-----EECCCTTCSSCCEEEEEECSSS------CEEEEEECCCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc-----cccCcccceecceeeEEEecCc------ceEEEEecccc
Confidence 578999999999999999999999999999999743 3344444444455666655431 0113333322
Q ss_pred ---------CCHHHHHHHHHHh-------------cccCCHHHHHHHHh----cCCCCEEEEcCcCCCCCHH-----HHH
Q 024032 167 ---------FNYNRVHEGLEEL-------------SSWMSEGVHHNQRC----LRSDDCALMKNDAEIDDLK-----SSP 215 (273)
Q Consensus 167 ---------~~~~~~~~~l~~~-------------~~~LSgGqkq~~r~----l~~p~iLlLDEPts~LD~~-----~~l 215 (273)
+..... +.++.+ ..+||+|++|+... +..|.+|+| +.+|+. ..+
T Consensus 216 i~~a~~~~~L~~~fl-~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~~~~~~l 290 (416)
T 1udx_A 216 IEGASEGKGLGLEFL-RHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEEEAVKAL 290 (416)
T ss_dssp CCCGGGSCCSCHHHH-HHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCHHHHHHH
T ss_pred ccchhhhhhhhHHHH-HHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhHHHHHHH
Confidence 211111 111111 14589999887632 579999999 889886 223
Q ss_pred HHHHhcCCcEEEEc
Q 024032 216 KYVLRRVDFAMVVS 229 (273)
Q Consensus 216 ~~l~~~~g~tiiiv 229 (273)
....++.+.+++++
T Consensus 291 ~~~l~~~g~~vi~i 304 (416)
T 1udx_A 291 ADALAREGLAVLPV 304 (416)
T ss_dssp HHHHHTTTSCEEEC
T ss_pred HHHHHhcCCeEEEE
Confidence 33333447788777
No 134
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.18 E-value=1.1e-11 Score=112.46 Aligned_cols=87 Identities=20% Similarity=0.109 Sum_probs=56.2
Q ss_pred eEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEE---CCeeCCCC-----CccEEEEeccchhh-----------
Q 024032 93 MDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLF---AQTSSGNS-----SHTITMYMEEHNVM----------- 152 (273)
Q Consensus 93 ~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i---~g~~i~~~-----~~~i~~v~q~~~~~----------- 152 (273)
|++.+|++++|+||||||||||+|+|+|+.+ ++|+|.+ +|+++... .+.+++++|.+...
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 5677899999999999999999999999999 9999999 88887532 13578999987531
Q ss_pred -hccCCcccccccccC--------CHHHHHHHHHHhc
Q 024032 153 -RSLQSGFCVYDSRGF--------NYNRVHEGLEELS 180 (273)
Q Consensus 153 -~~~~~~~tv~en~~~--------~~~~~~~~l~~~~ 180 (273)
..++..+|+ +|..+ ...++.++++.++
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~ 279 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGE 279 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTS
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCC
Confidence 123455677 76432 2345677777765
No 135
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.16 E-value=4e-11 Score=113.13 Aligned_cols=117 Identities=11% Similarity=0.090 Sum_probs=68.1
Q ss_pred EEcCCcEEEEEcCCCChHHHHHHH--HhhCcc-Ccc-----EEEECCeeCCC------CCccEEEEeccchhhhccCCcc
Q 024032 94 DIPPVITILLMGFSGSGKSSLVNL--MYSVLS-RSG-----LVLFAQTSSGN------SSHTITMYMEEHNVMRSLQSGF 159 (273)
Q Consensus 94 ~i~~Ge~~aivGpnGsGKSTLl~l--l~gl~~-~~G-----~I~i~g~~i~~------~~~~i~~v~q~~~~~~~~~~~~ 159 (273)
-|++|++++|+||||||||||++. +.++.+ +.| .+++++..... ..+++++.++
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~------------ 241 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD------------ 241 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH------------
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH------------
Confidence 589999999999999999999994 456665 544 77887765311 1111221111
Q ss_pred cccccc----cCCHHHHHHHHHHhcccCCHHHHHHHHhcCCCCEEEEcCcCCCCCHH------------------HHHHH
Q 024032 160 CVYDSR----GFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLK------------------SSPKY 217 (273)
Q Consensus 160 tv~en~----~~~~~~~~~~l~~~~~~LSgGqkq~~r~l~~p~iLlLDEPts~LD~~------------------~~l~~ 217 (273)
++.+|. ....+...+.++.+. +...-.+|+++++|||++.+|+. ..++.
T Consensus 242 ~vleni~~~~~~~~~~~~~~l~~~~---------~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~ 312 (400)
T 3lda_A 242 DALNNVAYARAYNADHQLRLLDAAA---------QMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQR 312 (400)
T ss_dssp HHHHTEEEEECCSHHHHHHHHHHHH---------HHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHH
T ss_pred hHhhcEEEeccCChHHHHHHHHHHH---------HHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHH
Confidence 122221 111111111111110 00013589999999999999852 22456
Q ss_pred HHhcCCcEEEEcee
Q 024032 218 VLRRVDFAMVVSNI 231 (273)
Q Consensus 218 l~~~~g~tiiiv~~ 231 (273)
++++.|.|||++.|
T Consensus 313 lake~gitVIlv~H 326 (400)
T 3lda_A 313 LADQFGVAVVVTNQ 326 (400)
T ss_dssp HHHHHCCEEEEEEE
T ss_pred HHHHcCCEEEEEEe
Confidence 66666999999933
No 136
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.14 E-value=2.1e-11 Score=113.41 Aligned_cols=100 Identities=15% Similarity=0.101 Sum_probs=63.0
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc--CccEEEEC-CeeCC-CCCccEEEEeccchhhhccCCcccccc
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS--RSGLVLFA-QTSSG-NSSHTITMYMEEHNVMRSLQSGFCVYD 163 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~--~~G~I~i~-g~~i~-~~~~~i~~v~q~~~~~~~~~~~~tv~e 163 (273)
++++++. .+|++++|+||||||||||+|+|+|+.. .+|.|.+. |.... .....+++++|+..++ ...++++
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~----dtpgv~e 280 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVI----DSPGVRE 280 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEEE----ECHHHHT
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEec----CcccHHH
Confidence 6777775 4899999999999999999999999875 78999987 65542 3445678888876543 3346766
Q ss_pred cc--cCCHHHHH----HHHHHhc---------ccCCHHHHHHHHh
Q 024032 164 SR--GFNYNRVH----EGLEELS---------SWMSEGVHHNQRC 193 (273)
Q Consensus 164 n~--~~~~~~~~----~~l~~~~---------~~LSgGqkq~~r~ 193 (273)
+. ..+.+++. +.++.++ ..|| ||+|+..+
T Consensus 281 ~~l~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~al 324 (358)
T 2rcn_A 281 FGLWHLEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAV 324 (358)
T ss_dssp CCCCCCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHH
T ss_pred hhhcCCCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHH
Confidence 52 23333333 3334333 5799 99887754
No 137
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.14 E-value=2.5e-13 Score=113.83 Aligned_cols=140 Identities=9% Similarity=-0.105 Sum_probs=71.9
Q ss_pred CcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeCCCCCccEEEEeccchhhhccCCccccccccc-----------
Q 024032 98 VITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRG----------- 166 (273)
Q Consensus 98 Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en~~----------- 166 (273)
|++++|+||||||||||+++|++ +.+|.+.++|.++.... ..++++|..... ...+++++..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~--~~~g~~~i~~d~~~~~~-~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~ 74 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA--QLDNSAYIEGDIINHMV-VGGYRPPWESDE----LLALTWKNITDLTVNFLLAQN 74 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH--HSSSEEEEEHHHHHTTC-CTTCCCGGGCHH----HHHHHHHHHHHHHHHHHHTTC
T ss_pred CeEEEEECCCCCcHHHHHHHHhc--ccCCeEEEcccchhhhh-ccccccCccchh----HHHHHHHHHHHHHHHHHhcCC
Confidence 68999999999999999999986 46788999887654322 223444433211 1113333210
Q ss_pred -------CCHHHHHHHHHHhcccCCHHHHHHH----------HhcCCCCEEEEcCcCCCCCHHHH--HHHHH--hcCCcE
Q 024032 167 -------FNYNRVHEGLEELSSWMSEGVHHNQ----------RCLRSDDCALMKNDAEIDDLKSS--PKYVL--RRVDFA 225 (273)
Q Consensus 167 -------~~~~~~~~~l~~~~~~LSgGqkq~~----------r~l~~p~iLlLDEPts~LD~~~~--l~~l~--~~~g~t 225 (273)
..........+.+ . |+|++|+. .++.+|+...+|+ ++|+... ...+. .+.+.+
T Consensus 75 ~~ild~~~~~~~~~~~~~~~-~--s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~~~~~~~~~~~~~~ 148 (189)
T 2bdt_A 75 DVVLDYIAFPDEAEALAQTV-Q--AKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLELVEEFESKGIDERY 148 (189)
T ss_dssp EEEEESCCCHHHHHHHHHHH-H--HHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHHHHHHHHTTCCTTS
T ss_pred cEEEeeccCHHHHHHHHHHH-H--hcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHHHHHHhhcCCCccE
Confidence 0111111111110 0 66665432 1134455556673 7888621 22222 223678
Q ss_pred EEEce---------eCCEEEEEeCCeEeeecChhhh
Q 024032 226 MVVSN---------IAEIYKALKAGDSKPLDATKRL 252 (273)
Q Consensus 226 iiiv~---------~ad~i~vl~~G~i~~~g~~~~l 252 (273)
+|.+. .||+|+ ++|+++..|+++-+
T Consensus 149 ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 149 FYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPL 182 (189)
T ss_dssp EEECSSSCGGGHHHHHHHHH--HCGGGSCC------
T ss_pred EEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCch
Confidence 88762 256777 99999999987654
No 138
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.13 E-value=3.9e-12 Score=117.31 Aligned_cols=81 Identities=17% Similarity=0.137 Sum_probs=65.9
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-------
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------- 137 (273)
.++++++++.|. ...+ |+++||++++|++++|+||||||||||+++|+|++. ++|+|.+.|.++..
T Consensus 29 ~ie~~~~~~~~~--~~~~----l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~ 102 (337)
T 2qm8_A 29 LAESRRADHRAA--VRDL----IDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSI 102 (337)
T ss_dssp HHTCSSHHHHHH--HHHH----HHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCS
T ss_pred HHeeCCcccccC--hHHH----HHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccch
Confidence 355666766663 3345 999999999999999999999999999999999999 99999999987632
Q ss_pred --CCccEEEEeccchhh
Q 024032 138 --SSHTITMYMEEHNVM 152 (273)
Q Consensus 138 --~~~~i~~v~q~~~~~ 152 (273)
.+.++++++|++..+
T Consensus 103 ~~~~~~i~~v~q~~~~~ 119 (337)
T 2qm8_A 103 LGDKTRMARLAIDRNAF 119 (337)
T ss_dssp SCCGGGSTTGGGCTTEE
T ss_pred HHHhhhheeeccCcccc
Confidence 345677888877654
No 139
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.11 E-value=2.2e-13 Score=122.09 Aligned_cols=112 Identities=14% Similarity=0.098 Sum_probs=75.2
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeCCC-----CCccEEEEeccchhhhccCCccccc
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVY 162 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~ 162 (273)
+++++|++++| ++|+||||||||||+++|+|.+.. |.|.++|.++.. ..+.+++++|+... .....++.
T Consensus 36 l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~-~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~---~~p~i~~~ 109 (274)
T 2x8a_A 36 FKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL-NFISVKGPELLNMYVGESERAVRQVFQRAKN---SAPCVIFF 109 (274)
T ss_dssp HHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC-EEEEEETTTTCSSTTHHHHHHHHHHHHHHHH---TCSEEEEE
T ss_pred HHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC-CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHh---cCCCeEee
Confidence 89999999999 999999999999999999997653 689999887643 12345666665421 12233555
Q ss_pred ccccC--C---H---HHHHHHHHHhcccCCHHHHHHHH---h-cCCCCEEEEcCcCC
Q 024032 163 DSRGF--N---Y---NRVHEGLEELSSWMSEGVHHNQR---C-LRSDDCALMKNDAE 207 (273)
Q Consensus 163 en~~~--~---~---~~~~~~l~~~~~~LSgGqkq~~r---~-l~~p~iLlLDEPts 207 (273)
|+... . . ......+..+..+|||||+|+.. + ..+|++| |||+.
T Consensus 110 Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~ 164 (274)
T 2x8a_A 110 DEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAIL 164 (274)
T ss_dssp ETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHH
T ss_pred ehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhc
Confidence 55321 0 0 11122344555789999987652 2 5678864 88864
No 140
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.08 E-value=1.6e-10 Score=105.43 Aligned_cols=115 Identities=10% Similarity=0.118 Sum_probs=59.4
Q ss_pred EEEEcCCCChHHHHHHHHhh-Ccc-CccEEEECCeeCCC---CCccEEEEeccchhhhccCCcccccccccCCHHHHHHH
Q 024032 101 ILLMGFSGSGKSSLVNLMYS-VLS-RSGLVLFAQTSSGN---SSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEG 175 (273)
Q Consensus 101 ~aivGpnGsGKSTLl~ll~g-l~~-~~G~I~i~g~~i~~---~~~~i~~v~q~~~~~~~~~~~~tv~en~~~~~~~~~~~ 175 (273)
+.|.||||+|||||+++|++ ++. ..|.+.++|.+... .+..++++++...+. . ...+........+++.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~ 112 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLE----I--TPSDMGNNDRIVIQEL 112 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEE----E--CCC----CCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEE----e--cHhhcCCcchHHHHHH
Confidence 79999999999999999999 677 89999999876542 233455555544321 0 1111111122234555
Q ss_pred HHHhccc--------CCHHHHHHHHhcCCCCEEEEcCcCCCCCHH--HHHHH-HHh-cCCcEEEEc
Q 024032 176 LEELSSW--------MSEGVHHNQRCLRSDDCALMKNDAEIDDLK--SSPKY-VLR-RVDFAMVVS 229 (273)
Q Consensus 176 l~~~~~~--------LSgGqkq~~r~l~~p~iLlLDEPts~LD~~--~~l~~-l~~-~~g~tiiiv 229 (273)
++.+... ||| ...+|+++|+|||++ ||+. +.+.+ +.+ ..+.++|++
T Consensus 113 i~~~~~~~~~~~~~~ls~-------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~ 170 (354)
T 1sxj_E 113 LKEVAQMEQVDFQDSKDG-------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMV 170 (354)
T ss_dssp HHHHTTTTC-------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEE
T ss_pred HHHHHHhccccccccccc-------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEE
Confidence 5554421 133 256899999999999 9998 33333 322 125666666
No 141
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.05 E-value=9.2e-11 Score=100.12 Aligned_cols=40 Identities=33% Similarity=0.380 Sum_probs=33.4
Q ss_pred EcCCcEEEEEcCCCChHHHHHHHHhhCcc-C---ccEEEECCee
Q 024032 95 IPPVITILLMGFSGSGKSSLVNLMYSVLS-R---SGLVLFAQTS 134 (273)
Q Consensus 95 i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~---~G~I~i~g~~ 134 (273)
.++|++++|+||||||||||+++|+|+++ . .|.|.++|..
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~ 62 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFH 62 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGB
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCc
Confidence 47899999999999999999999999987 4 4556555544
No 142
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.99 E-value=2.5e-12 Score=121.03 Aligned_cols=140 Identities=10% Similarity=0.073 Sum_probs=85.4
Q ss_pred EEcCCcEEEEEcCCCChHHHHHHHHhh------------Ccc-CccEEEECCeeCC------CCCccE---EEEeccchh
Q 024032 94 DIPPVITILLMGFSGSGKSSLVNLMYS------------VLS-RSGLVLFAQTSSG------NSSHTI---TMYMEEHNV 151 (273)
Q Consensus 94 ~i~~Ge~~aivGpnGsGKSTLl~ll~g------------l~~-~~G~I~i~g~~i~------~~~~~i---~~v~q~~~~ 151 (273)
++++|..++|||+||||||||+|+|+| .+. +.|.+.+.|..+. ..++.+ ..+++.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 457899999999999999999999999 445 7899999875432 112222 234444443
Q ss_pred hhccCCcccccccccCCHHHHHHHHHHhc--------------ccCCHHHHHHHHhcCCC--CEEEEcCcCCCCCHHHH-
Q 024032 152 MRSLQSGFCVYDSRGFNYNRVHEGLEELS--------------SWMSEGVHHNQRCLRSD--DCALMKNDAEIDDLKSS- 214 (273)
Q Consensus 152 ~~~~~~~~tv~en~~~~~~~~~~~l~~~~--------------~~LSgGqkq~~r~l~~p--~iLlLDEPts~LD~~~~- 214 (273)
....+..++.+ . .....+..+. ..++++ .+| +++++|||+.++|+...
T Consensus 96 ----~~~~s~~e~L~--~-~fl~~ir~~d~il~Vvd~~~d~~i~~v~~~--------~dP~~di~ildeel~~~D~~~~~ 160 (392)
T 1ni3_A 96 ----TKGASTGVGLG--N-AFLSHVRAVDAIYQVVRAFDDAEIIHVEGD--------VDPIRDLSIIVDELLIKDAEFVE 160 (392)
T ss_dssp ----CCCCCSSSSSC--H-HHHHHHTTCSEEEEEEECCCTTCSSCCSSS--------SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----ccCCcHHHHHH--H-HHHHHHHHHHHHHHHHhccccceeeeeccc--------cCcchhhhhchhhhHHHHHHHHH
Confidence 22233333221 1 1111122111 112222 288 99999999999999833
Q ss_pred -----HHHHHhcCCcEEEEc-------eeCCEEE-EEeCC-eEeeecCh
Q 024032 215 -----PKYVLRRVDFAMVVS-------NIAEIYK-ALKAG-DSKPLDAT 249 (273)
Q Consensus 215 -----l~~l~~~~g~tiiiv-------~~ad~i~-vl~~G-~i~~~g~~ 249 (273)
+..+..+.|.|++ . .+|+++. +|++| +++..++.
T Consensus 161 k~~~~l~~~~~~~g~ti~-sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~ 208 (392)
T 1ni3_A 161 KHLEGLRKITSRGANTLE-MKAKKEEQAIIEKVYQYLTETKQPIRKGDW 208 (392)
T ss_dssp HHHHHHHHTTCCSSCSSS-HHHHHHHHHHHHHHHHHHHTTCSCGGGSCC
T ss_pred HHHHHHHHHHHhcCCccc-cccHHHHHHHHHHHHHHhccCCceeecCCC
Confidence 2233022256643 4 5678888 89999 88876654
No 143
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=98.99 E-value=7.8e-10 Score=92.80 Aligned_cols=61 Identities=16% Similarity=0.062 Sum_probs=43.9
Q ss_pred ccCCHHHHHHHH---h-----cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEE-
Q 024032 181 SWMSEGVHHNQR---C-----LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKAL- 238 (273)
Q Consensus 181 ~~LSgGqkq~~r---~-----l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl- 238 (273)
..|||||||+.. + +++|+++||||||++||+. +.++++.+ +.++|++ ..||+++.+
T Consensus 63 ~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~--~~~~ivith~~~~~~~ad~i~~v~ 140 (173)
T 3kta_B 63 EAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK--ESQFIVITLRDVMMANADKIIGVS 140 (173)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSCHHHHTTCSEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc--CCEEEEEEecHHHHHhCCEEEEEE
Confidence 569999999862 2 2567999999999999998 33445543 4455555 678999754
Q ss_pred -eCCeE
Q 024032 239 -KAGDS 243 (273)
Q Consensus 239 -~~G~i 243 (273)
.+|..
T Consensus 141 ~~~g~s 146 (173)
T 3kta_B 141 MRDGVS 146 (173)
T ss_dssp EETTEE
T ss_pred ecCCEE
Confidence 56654
No 144
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.99 E-value=8.1e-12 Score=113.55 Aligned_cols=64 Identities=17% Similarity=0.048 Sum_probs=55.7
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEE-------------------cCCcEEEEEcCCCChHHHHHHHHhhCcc-
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDI-------------------PPVITILLMGFSGSGKSSLVNLMYSVLS- 123 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i-------------------~~Ge~~aivGpnGsGKSTLl~ll~gl~~- 123 (273)
...+++++|++.|. ++ +++++|.+ ++|+++||+||||||||||+++|+|++.
T Consensus 35 ~~~i~~~~v~~~y~----~~----~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~ 106 (308)
T 1sq5_A 35 NEDLSLEEVAEIYL----PL----SRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSR 106 (308)
T ss_dssp CTTCCHHHHHHTHH----HH----HHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTT
T ss_pred ccccchHhHHHHHH----HH----HHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 34688999999883 34 99999988 9999999999999999999999999864
Q ss_pred --CccEEEE---CCeeC
Q 024032 124 --RSGLVLF---AQTSS 135 (273)
Q Consensus 124 --~~G~I~i---~g~~i 135 (273)
++|+|.+ +|...
T Consensus 107 ~~~~G~i~vi~~d~~~~ 123 (308)
T 1sq5_A 107 WPEHRRVELITTDGFLH 123 (308)
T ss_dssp STTCCCEEEEEGGGGBC
T ss_pred CCCCCeEEEEecCCccC
Confidence 6899999 87664
No 145
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.98 E-value=1.2e-10 Score=100.69 Aligned_cols=37 Identities=22% Similarity=0.251 Sum_probs=22.9
Q ss_pred ceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHh-hCcc
Q 024032 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMY-SVLS 123 (273)
Q Consensus 87 ~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~-gl~~ 123 (273)
..+++||++++|++++|+||||||||||+++|+ |+++
T Consensus 16 ~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 16 TQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp ------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred ccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 389999999999999999999999999999999 9874
No 146
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.97 E-value=9e-10 Score=100.35 Aligned_cols=90 Identities=14% Similarity=0.216 Sum_probs=62.8
Q ss_pred eeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEEEEeccchhhhccCCcccccccccCC
Q 024032 90 KGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFN 168 (273)
Q Consensus 90 ~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en~~~~ 168 (273)
.++|+.++|++++|+|||||||||+++.|++++. ..|+|.+.+.+.... ..
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~-----------~a----------------- 147 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRA-----------AA----------------- 147 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCH-----------HH-----------------
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccH-----------HH-----------------
Confidence 3566678999999999999999999999999998 888998877664210 00
Q ss_pred HHHHHHHHHHhc----ccCCHHHHHHH------Hh-cCCCCEEEEcCcCC
Q 024032 169 YNRVHEGLEELS----SWMSEGVHHNQ------RC-LRSDDCALMKNDAE 207 (273)
Q Consensus 169 ~~~~~~~l~~~~----~~LSgGqkq~~------r~-l~~p~iLlLDEPts 207 (273)
.+.+...++.++ ..+|+|+.++. ++ ..+|+++|+|||..
T Consensus 148 ~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 148 IEQLKIWGERVGATVISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred HHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 011222233333 34567776543 22 57999999999975
No 147
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.97 E-value=2e-10 Score=104.21 Aligned_cols=58 Identities=19% Similarity=0.130 Sum_probs=43.4
Q ss_pred eEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEE---CCeeCCCC----C-ccEEEEeccchh
Q 024032 93 MDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLF---AQTSSGNS----S-HTITMYMEEHNV 151 (273)
Q Consensus 93 ~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i---~g~~i~~~----~-~~i~~v~q~~~~ 151 (273)
|++.+|++++|+||||||||||+|+|+ +++ .+|+|.+ +|++++.. + +.+++++|.+..
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~ 226 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGF 226 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCC
T ss_pred HhhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCc
Confidence 456789999999999999999999999 888 9999999 89877532 1 357999998753
No 148
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.96 E-value=1e-10 Score=106.71 Aligned_cols=59 Identities=22% Similarity=0.211 Sum_probs=36.5
Q ss_pred eEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEE---CCeeCCCCC---c-cEEEEeccchh
Q 024032 93 MDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLF---AQTSSGNSS---H-TITMYMEEHNV 151 (273)
Q Consensus 93 ~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i---~g~~i~~~~---~-~i~~v~q~~~~ 151 (273)
+++.+|++++|+||||||||||+|+|+|+.. .+|+|.+ .|+.++... + .+++++|.+.+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~ 234 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGF 234 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSC
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCc
Confidence 7788999999999999999999999999998 9999998 787765321 1 26888988764
No 149
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.96 E-value=3.3e-11 Score=105.49 Aligned_cols=56 Identities=21% Similarity=0.301 Sum_probs=39.9
Q ss_pred eeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-------------CCccEEEEecc
Q 024032 92 GMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-------------SSHTITMYMEE 148 (273)
Q Consensus 92 s~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-------------~~~~i~~v~q~ 148 (273)
+|++.+ ++++|+||||||||||+++|+|++. ++|.|.++|.++.. .+..+++++|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 455666 8999999999999999999999998 99999999987621 24567888874
No 150
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.93 E-value=8.4e-10 Score=95.09 Aligned_cols=46 Identities=22% Similarity=0.296 Sum_probs=34.6
Q ss_pred eeee-eeEEcCCcEEEEEcCCCChHHHHHH-HHhhCcc-CccEEEECCe
Q 024032 88 IQKG-GMDIPPVITILLMGFSGSGKSSLVN-LMYSVLS-RSGLVLFAQT 133 (273)
Q Consensus 88 L~~i-s~~i~~Ge~~aivGpnGsGKSTLl~-ll~gl~~-~~G~I~i~g~ 133 (273)
|+.+ .--+++|++++|+||||||||||+. ++.+..+ ..+.+++...
T Consensus 12 LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 12 VDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp HHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred HHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 6666 5678999999999999999999955 5455555 4555666554
No 151
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.90 E-value=7.3e-10 Score=92.32 Aligned_cols=41 Identities=27% Similarity=0.293 Sum_probs=36.7
Q ss_pred EEcCCcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeC
Q 024032 94 DIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSS 135 (273)
Q Consensus 94 ~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i 135 (273)
.+++|++++|+||||||||||+++|+|. ...|.|.++|.++
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~-~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL-PGVPKVHFHSDDL 45 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC-SSSCEEEECTTHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc-cCCCeEEEcccch
Confidence 4789999999999999999999999997 5789999998765
No 152
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.88 E-value=5.8e-12 Score=112.19 Aligned_cols=110 Identities=15% Similarity=0.143 Sum_probs=71.3
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeCCC-----CCccEEEEeccchhhhccCCccccc
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVY 162 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~ 162 (273)
+++++|++++| ++|+||||+|||||+++|++... .|.|.+++.++.. ..+.+..++|+... .....++.
T Consensus 65 l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~i~~i 138 (278)
T 1iy2_A 65 FHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-VPFITASGSDFVEMFVGVGAARVRDLFETAKR---HAPCIVFI 138 (278)
T ss_dssp HHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHT---SCSEEEEE
T ss_pred HHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHh---cCCcEEeh
Confidence 89999999999 89999999999999999999765 7889888766431 12234445554331 12233555
Q ss_pred ccccC-----------CHHHHHHHHHHhcccCCHHHHHHH---Hh-cCCCCEEEEcCc
Q 024032 163 DSRGF-----------NYNRVHEGLEELSSWMSEGVHHNQ---RC-LRSDDCALMKND 205 (273)
Q Consensus 163 en~~~-----------~~~~~~~~l~~~~~~LSgGqkq~~---r~-l~~p~iLlLDEP 205 (273)
|+... ..+...+.+..+...|||||+|+. ++ ..+|++ ||++
T Consensus 139 Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~--ld~~ 194 (278)
T 1iy2_A 139 DEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDI--LDPA 194 (278)
T ss_dssp ETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTS--SCHH
T ss_pred hhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchh--CCHh
Confidence 54210 112334555666678999997754 22 455654 5554
No 153
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.84 E-value=8.6e-09 Score=93.20 Aligned_cols=46 Identities=15% Similarity=0.195 Sum_probs=41.8
Q ss_pred eeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCC
Q 024032 89 QKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSG 136 (273)
Q Consensus 89 ~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~ 136 (273)
++++|+ +|++++|+|+||+||||++..|++++. ..|+|.+.+.++.
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~ 137 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ 137 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcc
Confidence 677888 999999999999999999999999999 8999999887754
No 154
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.84 E-value=1.1e-11 Score=108.67 Aligned_cols=112 Identities=14% Similarity=0.120 Sum_probs=71.0
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeCCC-----CCccEEEEeccchhhhccCCccccc
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVY 162 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~ 162 (273)
++++++++++| ++|+||||+|||||+++|++... .|.+.+++.++.. .++.+..++|+... .....++.
T Consensus 41 ~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~i~~~ 114 (254)
T 1ixz_A 41 FHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-VPFITASGSDFVEMFVGVGAARVRDLFETAKR---HAPCIVFI 114 (254)
T ss_dssp HHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTT---SSSEEEEE
T ss_pred HHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHh---cCCeEEEe
Confidence 89999999999 99999999999999999999765 7888888765421 12233344544321 12233455
Q ss_pred cccc-----------CCHHHHHHHHHHhcccCCHHHHHHH---Hh-cCCCCEEEEcCcCC
Q 024032 163 DSRG-----------FNYNRVHEGLEELSSWMSEGVHHNQ---RC-LRSDDCALMKNDAE 207 (273)
Q Consensus 163 en~~-----------~~~~~~~~~l~~~~~~LSgGqkq~~---r~-l~~p~iLlLDEPts 207 (273)
|+.. ...+...+.+..+...|||||+|+. ++ ..+|++ ||++..
T Consensus 115 Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~--ld~~l~ 172 (254)
T 1ixz_A 115 DEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDI--LDPALL 172 (254)
T ss_dssp ETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGG--SCGGGG
T ss_pred hhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchh--CCHHHc
Confidence 5421 0112334455566677899997754 22 355655 566543
No 155
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.81 E-value=3.3e-10 Score=100.38 Aligned_cols=52 Identities=23% Similarity=0.367 Sum_probs=34.5
Q ss_pred CceEEEEE-EEEeecCCeeeeccceeeeeeEEcC---CcEEEEEcCCCChHHHHHHHHhhC
Q 024032 65 GLNELRHK-FLSYRSGDFWIPIGGIQKGGMDIPP---VITILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 65 ~~i~~~~v-~~~y~~g~~~v~~~~L~~is~~i~~---Ge~~aivGpnGsGKSTLl~ll~gl 121 (273)
..++++|+ +++|. ++.++ |+++||+|++ |++++|+|++||||||+.++|++.
T Consensus 16 ~~l~~~~~~~~~~~-~~~~~----l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 16 ALLETGSLLHSPFD-EEQQI----LKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp -----------------CHH----HHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHH
T ss_pred CceEEcceeeEEec-Ccchh----hhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999 99982 33455 9999999999 999999999999999999999884
No 156
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.79 E-value=8.1e-10 Score=107.28 Aligned_cols=48 Identities=17% Similarity=0.237 Sum_probs=44.9
Q ss_pred ceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCee
Q 024032 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTS 134 (273)
Q Consensus 87 ~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~ 134 (273)
++++++|.+++|++++|+||||||||||+++|+|+++ ++|.|.+.|.+
T Consensus 249 ~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~ 297 (511)
T 2oap_1 249 VLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTR 297 (511)
T ss_dssp HHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSC
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcc
Confidence 4778899999999999999999999999999999999 99999998865
No 157
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.72 E-value=1.6e-09 Score=107.02 Aligned_cols=66 Identities=20% Similarity=0.181 Sum_probs=55.7
Q ss_pred CCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-Cc-cEEEECCeeCCCCCccEEEEecc
Q 024032 79 GDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RS-GLVLFAQTSSGNSSHTITMYMEE 148 (273)
Q Consensus 79 g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~-G~I~i~g~~i~~~~~~i~~v~q~ 148 (273)
|...+ ++.+++.+.+|+.+.|+||||+|||||+++|+++++ .. |.+.+.+.+.......+.++++.
T Consensus 45 G~~~~----l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~p~g 112 (604)
T 3k1j_A 45 GQEHA----VEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTVPAC 112 (604)
T ss_dssp SCHHH----HHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEEETT
T ss_pred Cchhh----HhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEEecc
Confidence 44455 899999999999999999999999999999999998 55 88888888776666667776654
No 158
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.72 E-value=7.2e-10 Score=93.83 Aligned_cols=49 Identities=22% Similarity=0.333 Sum_probs=43.6
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCccCccEE--EECCeeCC
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLV--LFAQTSSG 136 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I--~i~g~~i~ 136 (273)
.+..++..++|++++|+||||||||||+++|++.+...|.+ +++|.++.
T Consensus 15 ~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 15 VDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVR 65 (200)
T ss_dssp HHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHT
T ss_pred HHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhh
Confidence 77888889999999999999999999999999988766887 88887664
No 159
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.71 E-value=1e-08 Score=85.78 Aligned_cols=36 Identities=22% Similarity=0.265 Sum_probs=31.0
Q ss_pred EEEEEcCCCChHHHHHHHHhhCcc------------CccEEEECCeeC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVLS------------RSGLVLFAQTSS 135 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~~------------~~G~I~i~g~~i 135 (273)
.++|+|+||||||||++.++|... .+|.|.++|+++
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~ 78 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 78 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEE
Confidence 689999999999999999999753 268899998754
No 160
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.68 E-value=2.9e-09 Score=89.13 Aligned_cols=30 Identities=30% Similarity=0.535 Sum_probs=26.3
Q ss_pred CcEEEEEcCCCChHHHHHHHHhhCcc-CccE
Q 024032 98 VITILLMGFSGSGKSSLVNLMYSVLS-RSGL 127 (273)
Q Consensus 98 Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~ 127 (273)
|++++|+||||||||||+++|+|+++ ..|.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~ 31 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGF 31 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEEC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceE
Confidence 57899999999999999999999987 4443
No 161
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.67 E-value=2.5e-09 Score=94.16 Aligned_cols=69 Identities=19% Similarity=0.183 Sum_probs=51.8
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHh---hCcc-CccEEE--------ECCeeCCC------CCccEEEEeccchhh-hccC
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMY---SVLS-RSGLVL--------FAQTSSGN------SSHTITMYMEEHNVM-RSLQ 156 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~---gl~~-~~G~I~--------i~g~~i~~------~~~~i~~v~q~~~~~-~~~~ 156 (273)
++|++++|+|||||||||++++|+ |+.. ++|.++ .+|.++.. +++.+++++|..... ...+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 104 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQVIL 104 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceEEE
Confidence 789999999999999999999999 9988 999998 88887742 345678888754321 1113
Q ss_pred Cccccccc
Q 024032 157 SGFCVYDS 164 (273)
Q Consensus 157 ~~~tv~en 164 (273)
+..++.++
T Consensus 105 ~~~~v~~~ 112 (252)
T 4e22_A 105 EGEDVSNE 112 (252)
T ss_dssp TTEECTTG
T ss_pred CCeehhHH
Confidence 34455555
No 162
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.64 E-value=1.5e-08 Score=83.91 Aligned_cols=61 Identities=20% Similarity=0.241 Sum_probs=44.3
Q ss_pred eeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCe--e-CC--------CCCccEEEEeccch
Q 024032 89 QKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQT--S-SG--------NSSHTITMYMEEHN 150 (273)
Q Consensus 89 ~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~--~-i~--------~~~~~i~~v~q~~~ 150 (273)
++++|++.+| +++|+||||||||||+++|.+++. ..|.....+. + +. .....+.+++|++.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~ 90 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNED 90 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCC
Confidence 7889999999 999999999999999999999876 5554322221 1 10 12346778888753
No 163
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=98.63 E-value=3.7e-08 Score=91.45 Aligned_cols=58 Identities=12% Similarity=0.210 Sum_probs=42.3
Q ss_pred cCCHHHHHHH---------Hh-cCC-CCEEEEcCcCCCCCHHH--HH-HHHHh-cCCcEEEEc-------eeCCEEEEEe
Q 024032 182 WMSEGVHHNQ---------RC-LRS-DDCALMKNDAEIDDLKS--SP-KYVLR-RVDFAMVVS-------NIAEIYKALK 239 (273)
Q Consensus 182 ~LSgGqkq~~---------r~-l~~-p~iLlLDEPts~LD~~~--~l-~~l~~-~~g~tiiiv-------~~ad~i~vl~ 239 (273)
.|||||+|+. ++ ..+ |++|||||||++||+.. .+ ..+.+ ..+.+||++ ..||++++|+
T Consensus 280 ~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~~~d~~~~l~ 359 (371)
T 3auy_A 280 NLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIINVK 359 (371)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGGGCSEEEEEE
T ss_pred hcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHhhCCEEEEEE
Confidence 6999999975 12 467 99999999999999992 22 22322 114577777 4579999996
No 164
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.62 E-value=1.3e-08 Score=86.03 Aligned_cols=59 Identities=19% Similarity=0.278 Sum_probs=40.2
Q ss_pred eeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeCCCC----CccEEEEeccchh
Q 024032 90 KGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNS----SHTITMYMEEHNV 151 (273)
Q Consensus 90 ~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i~~~----~~~i~~v~q~~~~ 151 (273)
+-.++.++|++++|+||||||||||+++|++.+ |.+.+++.++... +...++++|+...
T Consensus 21 ~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~---g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~ 83 (200)
T 4eun_A 21 QSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET---GLEFAEADAFHSPENIATMQRGIPLTDEDR 83 (200)
T ss_dssp -------CCCEEEEECCTTSCHHHHHHHHHHHH---CCEEEEGGGGSCHHHHHHHHTTCCCCHHHH
T ss_pred HhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh---CCeEEcccccccHHHHHHHhcCCCCCCccc
Confidence 334667899999999999999999999999976 8899988776421 1133556665443
No 165
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.61 E-value=1.4e-08 Score=85.82 Aligned_cols=36 Identities=25% Similarity=0.433 Sum_probs=24.6
Q ss_pred ceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCc
Q 024032 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 87 ~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
+++++||++++|++++|+||+||||||+.+.|++.+
T Consensus 14 ~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 14 GTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ----------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 399999999999999999999999999999999754
No 166
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.60 E-value=2.1e-08 Score=84.13 Aligned_cols=61 Identities=16% Similarity=0.261 Sum_probs=39.0
Q ss_pred eEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-Ccc-EEEECCeeC-CCCCccEEEEeccchhhh
Q 024032 93 MDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSG-LVLFAQTSS-GNSSHTITMYMEEHNVMR 153 (273)
Q Consensus 93 ~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G-~I~i~g~~i-~~~~~~i~~v~q~~~~~~ 153 (273)
+++++|++++|+||||||||||+++|++++. +.| .+....... ......++++++++..+.
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFKTRDAFE 64 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEECCCCEECSCCCTTCCBTTTBEECCHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeEEecccccCCCCCCccCCCceEEcCHHHHH
Confidence 4688999999999999999999999999985 555 221111110 011223567888765543
No 167
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.59 E-value=1.3e-07 Score=85.47 Aligned_cols=39 Identities=21% Similarity=0.309 Sum_probs=33.1
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhhCcc-Ccc-EEEECCee
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYSVLS-RSG-LVLFAQTS 134 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G-~I~i~g~~ 134 (273)
.+|++++|+|||||||||+++.|++.+. .+| .|.+-+.+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D 143 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTD 143 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 5799999999999999999999999998 788 56554443
No 168
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=98.59 E-value=6.8e-08 Score=91.25 Aligned_cols=57 Identities=9% Similarity=0.104 Sum_probs=42.5
Q ss_pred cCCHHHHHHHHh----c----CCCCEEEEcCcCCCCCHHH------HHHHHHhcCCcEEEEc-------eeCCEEEEEe
Q 024032 182 WMSEGVHHNQRC----L----RSDDCALMKNDAEIDDLKS------SPKYVLRRVDFAMVVS-------NIAEIYKALK 239 (273)
Q Consensus 182 ~LSgGqkq~~r~----l----~~p~iLlLDEPts~LD~~~------~l~~l~~~~g~tiiiv-------~~ad~i~vl~ 239 (273)
.|||||||+..+ + .+|+++||||||++||+.. .++.+.++ +.++|++ ..||++++|.
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~-~~~~ii~th~~~~~~~~d~~~~~~ 410 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNP-DLQFIVISLKNTMFEKSDALVGVY 410 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBT-TBEEEEECSCHHHHTTCSEEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcC-CCEEEEEECCHHHHHhCCEEEEEE
Confidence 399999997622 2 5899999999999999992 23333322 6788887 5689998885
No 169
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.58 E-value=9.8e-09 Score=99.57 Aligned_cols=47 Identities=26% Similarity=0.255 Sum_probs=38.9
Q ss_pred eeeeEEcCCcEEEEEcCCCChHHHHHHHHhh--Ccc-CccEEEECCeeCC
Q 024032 90 KGGMDIPPVITILLMGFSGSGKSSLVNLMYS--VLS-RSGLVLFAQTSSG 136 (273)
Q Consensus 90 ~is~~i~~Ge~~aivGpnGsGKSTLl~ll~g--l~~-~~G~I~i~g~~i~ 136 (273)
.+.+++.++..+.|.|++||||||+++.|.. ++. +.|++.+.+.|..
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK 208 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPK 208 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCS
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCc
Confidence 4678889999999999999999999999875 455 7788887666654
No 170
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.58 E-value=2.9e-08 Score=94.60 Aligned_cols=147 Identities=11% Similarity=0.048 Sum_probs=89.8
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-Ccc-EEEECCeeCCC--CCccE-EEEeccchhhhccCCccccc
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSG-LVLFAQTSSGN--SSHTI-TMYMEEHNVMRSLQSGFCVY 162 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G-~I~i~g~~i~~--~~~~i-~~v~q~~~~~~~~~~~~tv~ 162 (273)
|+++..-+++|+++.|.|++|+|||||+..+++... ..| .|.+.+..... +..++ +.... .. +. .+.
T Consensus 193 LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~~l~~r~~~~~~~-~~-~~------~l~ 264 (454)
T 2r6a_A 193 LDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLVMRMLCAEGN-IN-AQ------NLR 264 (454)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCHHHHHHHHHHHHHT-CC-HH------HHH
T ss_pred HHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHcC-CC-HH------HHh
Confidence 888887899999999999999999999999998765 445 45543322211 11110 00000 00 00 010
Q ss_pred ccccCCH---HHHHHHHHHhc---------ccCCHHHHHHH-H-h--cCCCCEEEEcCcCCCCCHH--------------
Q 024032 163 DSRGFNY---NRVHEGLEELS---------SWMSEGVHHNQ-R-C--LRSDDCALMKNDAEIDDLK-------------- 212 (273)
Q Consensus 163 en~~~~~---~~~~~~l~~~~---------~~LSgGqkq~~-r-~--l~~p~iLlLDEPts~LD~~-------------- 212 (273)
+..+.. +++.++++.+. ..+|.++.+.. + + -.+|+++++|+++...+..
T Consensus 265 -~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~ 343 (454)
T 2r6a_A 265 -TGKLTPEDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIRAKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEIS 343 (454)
T ss_dssp -TSCCCHHHHHHHHHHHHHHHSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHH
T ss_pred -cCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHH
Confidence 011222 23444454443 35799887633 2 2 2589999999999877431
Q ss_pred HHHHHHHhcCCcEEEEce---------------------------eCCEEEEEeCCeE
Q 024032 213 SSPKYVLRRVDFAMVVSN---------------------------IAEIYKALKAGDS 243 (273)
Q Consensus 213 ~~l~~l~~~~g~tiiiv~---------------------------~ad~i~vl~~G~i 243 (273)
..++.++++.|.+||++. .||.|++|..++.
T Consensus 344 ~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 344 RSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp HHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred HHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 235667666789998882 2688999877654
No 171
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.52 E-value=6.1e-08 Score=82.60 Aligned_cols=28 Identities=25% Similarity=0.344 Sum_probs=26.4
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
++|++++|+||||||||||++.|++.++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5899999999999999999999999876
No 172
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.48 E-value=5.6e-08 Score=80.88 Aligned_cols=35 Identities=17% Similarity=0.204 Sum_probs=29.5
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhhCcc--CccEEEE
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYSVLS--RSGLVLF 130 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~gl~~--~~G~I~i 130 (273)
.+|++++|+||||||||||+++|+++++ ..|.|..
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ 39 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPH 39 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeec
Confidence 3689999999999999999999999875 3566544
No 173
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.48 E-value=3e-08 Score=85.85 Aligned_cols=43 Identities=19% Similarity=0.197 Sum_probs=37.0
Q ss_pred eeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeC
Q 024032 90 KGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSS 135 (273)
Q Consensus 90 ~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i 135 (273)
+-+.+.++|++++|+|+||||||||+++|+|+ .|.|.+.+++.
T Consensus 12 ~~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~---~g~v~~~~~~~ 54 (230)
T 2vp4_A 12 TKYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY---KNDICLLTEPV 54 (230)
T ss_dssp CCBTTTCCCEEEEEECSTTSCHHHHHHTTGGG---TTTEEEECCTH
T ss_pred CccCCCCCceEEEEECCCCCCHHHHHHHHHhc---cCCeEEEecCH
Confidence 33456689999999999999999999999997 78898888764
No 174
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.46 E-value=2.1e-07 Score=86.08 Aligned_cols=36 Identities=19% Similarity=0.254 Sum_probs=29.1
Q ss_pred EEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEE
Q 024032 94 DIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVL 129 (273)
Q Consensus 94 ~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~ 129 (273)
-+++|+++.|.||+|||||||+..++.... ..|.+.
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vl 93 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAA 93 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEE
Confidence 578999999999999999999888876554 444443
No 175
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.42 E-value=7.2e-08 Score=81.62 Aligned_cols=42 Identities=21% Similarity=0.241 Sum_probs=36.6
Q ss_pred EEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeC
Q 024032 94 DIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSS 135 (273)
Q Consensus 94 ~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i 135 (273)
..++|++++|+|+||||||||+++|+++++ ..|.|.+.+.+.
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence 357889999999999999999999999998 888888766553
No 176
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.42 E-value=7.3e-08 Score=88.16 Aligned_cols=49 Identities=18% Similarity=0.198 Sum_probs=44.5
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCC
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSG 136 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~ 136 (273)
+++++|++++|++++|+||||+||||++..|++.+. ..|+|.+.+.|+.
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~ 144 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTF 144 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 478999999999999999999999999999999998 8999999887763
No 177
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.41 E-value=1e-07 Score=95.28 Aligned_cols=118 Identities=17% Similarity=0.187 Sum_probs=67.3
Q ss_pred eeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc---CccEEEECCeeCCCC-----CccEEEEeccchhhhccCCcccccc
Q 024032 92 GMDIPPVITILLMGFSGSGKSSLVNLMYSVLS---RSGLVLFAQTSSGNS-----SHTITMYMEEHNVMRSLQSGFCVYD 163 (273)
Q Consensus 92 s~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~---~~G~I~i~g~~i~~~-----~~~i~~v~q~~~~~~~~~~~~tv~e 163 (273)
+++++++..++|+|++|+|||||++.|++... ..|+| .+|..+.+. ++.+.+..+...+... ....+++|
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~~~nliD 80 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GHRVFLLD 80 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TEEEEEEE
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-CEEEEEEe
Confidence 46778999999999999999999999997643 57888 566555432 2334444443332111 11224455
Q ss_pred cccCCH--HHHHHHHHHhcccCCHHHHHHHHhcCCCCEEEEcCcCCCCCHH--HHHHHHHhcCCcEEEEc
Q 024032 164 SRGFNY--NRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLK--SSPKYVLRRVDFAMVVS 229 (273)
Q Consensus 164 n~~~~~--~~~~~~l~~~~~~LSgGqkq~~r~l~~p~iLlLDEPts~LD~~--~~l~~l~~~~g~tiiiv 229 (273)
.++... ..+...+. ..++-++++| |+.++++. ..++.+.+ .+.+++++
T Consensus 81 TpG~~~f~~~~~~~l~----------------~ad~~ilVvD-~~~g~~~qt~~~~~~~~~-~~ip~ilv 132 (665)
T 2dy1_A 81 APGYGDFVGEIRGALE----------------AADAALVAVS-AEAGVQVGTERAWTVAER-LGLPRMVV 132 (665)
T ss_dssp CCCSGGGHHHHHHHHH----------------HCSEEEEEEE-TTTCSCHHHHHHHHHHHH-TTCCEEEE
T ss_pred CCCccchHHHHHHHHh----------------hcCcEEEEEc-CCcccchhHHHHHHHHHH-ccCCEEEE
Confidence 444321 11111111 3566788888 88888877 33444433 36666555
No 178
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.40 E-value=7.9e-09 Score=100.03 Aligned_cols=112 Identities=14% Similarity=0.114 Sum_probs=70.5
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeCCCC-----CccEEEEeccchhhhccCCccccc
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNS-----SHTITMYMEEHNVMRSLQSGFCVY 162 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i~~~-----~~~i~~v~q~~~~~~~~~~~~tv~ 162 (273)
++++++.+++| +.|+||||+|||||+++|++... .+.+.+++.++... .+++..++++... ......+.
T Consensus 56 ~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~---~~p~il~I 129 (499)
T 2dhr_A 56 FHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-VPFITASGSDFVEMFVGVGAARVRDLFETAKR---HAPCIVFI 129 (499)
T ss_dssp TTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSS---SSSCEEEE
T ss_pred hhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHh---cCCCEEEE
Confidence 88889999999 89999999999999999999764 67888888765421 1223333443321 01122333
Q ss_pred cccc-----------CCHHHHHHHHHHhcccCCHHHHHHH---Hh-cCCCCEEEEcCcCC
Q 024032 163 DSRG-----------FNYNRVHEGLEELSSWMSEGVHHNQ---RC-LRSDDCALMKNDAE 207 (273)
Q Consensus 163 en~~-----------~~~~~~~~~l~~~~~~LSgGqkq~~---r~-l~~p~iLlLDEPts 207 (273)
|+.. ...++..+.+..+...||||++|+. .+ ..+|++ |||+..
T Consensus 130 DEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~--LD~aLl 187 (499)
T 2dhr_A 130 DEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDI--LDPALL 187 (499)
T ss_dssp ECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGG--SCTTTS
T ss_pred ehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhh--cCcccc
Confidence 3311 1123344556666677999986643 22 456666 788775
No 179
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.37 E-value=1.4e-07 Score=77.46 Aligned_cols=38 Identities=26% Similarity=0.258 Sum_probs=32.6
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeCC
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSG 136 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i~ 136 (273)
.+|++++|+|||||||||++++|++.+ |.+.+++.++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~---g~~~i~~d~~~ 43 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL---HAAFLDGDFLH 43 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH---TCEEEEGGGGC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh---CcEEEeCcccc
Confidence 568999999999999999999999865 77888776653
No 180
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.36 E-value=8.4e-09 Score=94.38 Aligned_cols=77 Identities=23% Similarity=0.240 Sum_probs=56.0
Q ss_pred EEEEEEEeecCCeeeeccceeeeeeEEcCC-------cEEEEEcCCCChHHHHHHHHhhCc----c-CccEEEECCeeCC
Q 024032 69 LRHKFLSYRSGDFWIPIGGIQKGGMDIPPV-------ITILLMGFSGSGKSSLVNLMYSVL----S-RSGLVLFAQTSSG 136 (273)
Q Consensus 69 ~~~v~~~y~~g~~~v~~~~L~~is~~i~~G-------e~~aivGpnGsGKSTLl~ll~gl~----~-~~G~I~i~g~~i~ 136 (273)
.++++..| |+..+ ++++++.+++| +.++|+||||+|||||+++|+|.+ . .+|.+...+.++.
T Consensus 21 ~~~l~~~~--g~~~~----~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~ 94 (334)
T 1in4_A 21 PKSLDEFI--GQENV----KKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMA 94 (334)
T ss_dssp CSSGGGCC--SCHHH----HHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHH
T ss_pred CccHHHcc--CcHHH----HHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHH
Confidence 33444433 44445 89999999876 899999999999999999999987 5 6787776665543
Q ss_pred C-----CCccEEEEeccchh
Q 024032 137 N-----SSHTITMYMEEHNV 151 (273)
Q Consensus 137 ~-----~~~~i~~v~q~~~~ 151 (273)
. .+..+.++.+...+
T Consensus 95 ~~~~~~~~~~v~~iDE~~~l 114 (334)
T 1in4_A 95 AILTSLERGDVLFIDEIHRL 114 (334)
T ss_dssp HHHHHCCTTCEEEEETGGGC
T ss_pred HHHHHccCCCEEEEcchhhc
Confidence 1 23567777775543
No 181
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.31 E-value=1.5e-06 Score=80.01 Aligned_cols=113 Identities=14% Similarity=0.100 Sum_probs=64.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeCCCCCccEEEEeccchhhhccCCcccccccccCCHHHHHHHH
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGL 176 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en~~~~~~~~~~~l 176 (273)
..-.++|+|++|+|||||++.++|... ...+.+.......++.+.++.. .+.+.|..+...
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~-----~~~~~~~~t~~~~~~~~~~~~~-------~~~l~Dt~G~~~------- 226 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKP-----EIASYPFTTRGINVGQFEDGYF-------RYQIIDTPGLLD------- 226 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCC-----EEECCTTCSSCEEEEEEEETTE-------EEEEEECTTTSS-------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-----ccCCCCCeeeceeEEEEEecCc-------eEEEEeCCCccc-------
Confidence 344889999999999999999998543 1111111111112233322211 123455444321
Q ss_pred HHhcccCCHHHHHHHHh---cCCCCEEEEc-CcCCCCCHHHH---HHHHHhcC-CcEEEEc
Q 024032 177 EELSSWMSEGVHHNQRC---LRSDDCALMK-NDAEIDDLKSS---PKYVLRRV-DFAMVVS 229 (273)
Q Consensus 177 ~~~~~~LSgGqkq~~r~---l~~p~iLlLD-EPts~LD~~~~---l~~l~~~~-g~tiiiv 229 (273)
.....+|++++|+..+ ..++-++++| +|..++|.... +..+.... +..++++
T Consensus 227 -~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV 286 (357)
T 2e87_A 227 -RPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVV 286 (357)
T ss_dssp -SCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEE
T ss_pred -cchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 1124578888776543 3566789999 99999988743 33443322 5666666
No 182
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.30 E-value=1.4e-07 Score=88.15 Aligned_cols=42 Identities=24% Similarity=0.218 Sum_probs=37.5
Q ss_pred ceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCccCccEEEE
Q 024032 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLF 130 (273)
Q Consensus 87 ~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i 130 (273)
+|+++++.+++|++++|+||||||||||+++|+|.+ .|.+..
T Consensus 158 ~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~--~g~~~~ 199 (377)
T 1svm_A 158 FLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC--GGKALN 199 (377)
T ss_dssp HHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH--CCEEEC
T ss_pred HHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc--CCcEEE
Confidence 489999999999999999999999999999999864 566654
No 183
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.28 E-value=1.1e-06 Score=81.01 Aligned_cols=41 Identities=29% Similarity=0.367 Sum_probs=32.0
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhh--Ccc-CccEEEEC
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYS--VLS-RSGLVLFA 131 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~g--l~~-~~G~I~i~ 131 (273)
|++++++++ .++|+|++|||||||++.|.| +++ .+|.+...
T Consensus 27 l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~ 70 (360)
T 3t34_A 27 LPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRR 70 (360)
T ss_dssp C----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCS
T ss_pred cccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCc
Confidence 999999998 999999999999999999999 566 67766533
No 184
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.27 E-value=2e-07 Score=91.19 Aligned_cols=42 Identities=26% Similarity=0.350 Sum_probs=37.1
Q ss_pred EEcCCcEEEEEcCCCChHHHHHHHHhhCcc-Ccc-EEE-ECCeeC
Q 024032 94 DIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSG-LVL-FAQTSS 135 (273)
Q Consensus 94 ~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G-~I~-i~g~~i 135 (273)
.+++|++++|+|+||||||||+++|++.+. .+| .+. ++|.++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 578999999999999999999999999988 776 675 888664
No 185
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=98.25 E-value=3.6e-07 Score=86.30 Aligned_cols=33 Identities=30% Similarity=0.410 Sum_probs=28.4
Q ss_pred eEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-Cc
Q 024032 93 MDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RS 125 (273)
Q Consensus 93 ~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~ 125 (273)
+++.+|++++|+||||||||||+++|+++.. .+
T Consensus 21 ~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~~ 54 (430)
T 1w1w_A 21 VGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRS 54 (430)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHHHHTTC--
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhhhcccc
Confidence 4567899999999999999999999999876 44
No 186
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.25 E-value=7.9e-08 Score=82.01 Aligned_cols=52 Identities=21% Similarity=0.268 Sum_probs=40.4
Q ss_pred CcEEEEEcCCCChHHHHHHHHhhCc---c-CccEEEE--------CCeeCCC------CCccEEEEeccc
Q 024032 98 VITILLMGFSGSGKSSLVNLMYSVL---S-RSGLVLF--------AQTSSGN------SSHTITMYMEEH 149 (273)
Q Consensus 98 Ge~~aivGpnGsGKSTLl~ll~gl~---~-~~G~I~i--------~g~~i~~------~~~~i~~v~q~~ 149 (273)
+.+++|+|||||||||+.++|++.+ . ++|.+.. .|.++.. +++.+++++|++
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 74 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVST 74 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeecc
Confidence 5689999999999999999999876 5 7888876 5665542 345567777754
No 187
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.23 E-value=1.6e-07 Score=86.08 Aligned_cols=43 Identities=21% Similarity=0.173 Sum_probs=35.5
Q ss_pred eeeeeeEEcCCc------EEEEEcCCCChHHHHHHHHhhCcc---CccEEEE
Q 024032 88 IQKGGMDIPPVI------TILLMGFSGSGKSSLVNLMYSVLS---RSGLVLF 130 (273)
Q Consensus 88 L~~is~~i~~Ge------~~aivGpnGsGKSTLl~ll~gl~~---~~G~I~i 130 (273)
|++++..+..+. ++||+||||||||||+++|.+++. ..|.+.+
T Consensus 76 l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~ 127 (321)
T 3tqc_A 76 LQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEV 127 (321)
T ss_dssp HHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEE
T ss_pred HHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEE
Confidence 777887777776 999999999999999999999876 3455443
No 188
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.22 E-value=7.5e-07 Score=74.42 Aligned_cols=36 Identities=22% Similarity=0.292 Sum_probs=30.2
Q ss_pred EEEEEcCCCChHHHHHHHHhhCc-----------c-CccEEEECCeeC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVL-----------S-RSGLVLFAQTSS 135 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~-----------~-~~G~I~i~g~~i 135 (273)
.++|+|+||||||||++.++|.. . ..|.|.++|.++
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~ 54 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 54 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEE
Confidence 57999999999999999999973 1 257899998754
No 189
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.22 E-value=2.4e-06 Score=79.31 Aligned_cols=41 Identities=17% Similarity=0.242 Sum_probs=34.6
Q ss_pred EEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEE-EECCee
Q 024032 94 DIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLV-LFAQTS 134 (273)
Q Consensus 94 ~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I-~i~g~~ 134 (273)
-+++|+++.|.||+|||||||+..++.... ..|.+ ++++..
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~ 99 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEH 99 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence 478999999999999999999999999877 66765 555544
No 190
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.20 E-value=3.1e-07 Score=84.34 Aligned_cols=48 Identities=15% Similarity=0.106 Sum_probs=43.6
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeC
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSS 135 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i 135 (273)
++++++.+.+|.+++|+|++|+|||||++.|++.+. ..|.+.+-+.+.
T Consensus 46 ~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~ 94 (341)
T 2p67_A 46 LDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDP 94 (341)
T ss_dssp HHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred HHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecC
Confidence 889999999999999999999999999999999988 888887766554
No 191
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.19 E-value=6.6e-07 Score=76.44 Aligned_cols=31 Identities=29% Similarity=0.396 Sum_probs=26.4
Q ss_pred eEEcCCcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 93 MDIPPVITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 93 ~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
+...+|++++|+||||||||||++.|.+.++
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4446899999999999999999999998764
No 192
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.13 E-value=8.8e-07 Score=72.22 Aligned_cols=27 Identities=30% Similarity=0.402 Sum_probs=24.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
.|++++|+||||||||||+++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999998653
No 193
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.11 E-value=4.6e-06 Score=76.85 Aligned_cols=120 Identities=12% Similarity=0.082 Sum_probs=71.5
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEEEEeccchhhhccCCccccccccc
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRG 166 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en~~ 166 (273)
|+.+.--+++|+++.|.|++|+|||||+.-++.... ..+.| .|+.-+...- .+...+ +....+
T Consensus 36 LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~V--------------l~fSlEms~~-ql~~Rl-ls~~~~ 99 (338)
T 4a1f_A 36 LDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGV--------------AVFSLEMSAE-QLALRA-LSDLTS 99 (338)
T ss_dssp HHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEE--------------EEEESSSCHH-HHHHHH-HHHHHC
T ss_pred HHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeE--------------EEEeCCCCHH-HHHHHH-HHHhhC
Confidence 777666799999999999999999999988876433 22222 2221111000 000000 000001
Q ss_pred CCHHHHHHHHHHhcccCCHHHHHHHH-h---cCCCCEEEEcCcCCCCCHH-HHHHHHHhcC-CcEEEEc
Q 024032 167 FNYNRVHEGLEELSSWMSEGVHHNQR-C---LRSDDCALMKNDAEIDDLK-SSPKYVLRRV-DFAMVVS 229 (273)
Q Consensus 167 ~~~~~~~~~l~~~~~~LSgGqkq~~r-~---l~~p~iLlLDEPts~LD~~-~~l~~l~~~~-g~tiiiv 229 (273)
.+...+. ...||.++.++.. + +.+++++|.|+|...++-. ..++.+.++. |..+|||
T Consensus 100 v~~~~l~------~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVI 162 (338)
T 4a1f_A 100 INMHDLE------SGRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFI 162 (338)
T ss_dssp CCHHHHH------HTCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred CCHHHHh------cCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEE
Confidence 1111111 1579999988752 1 6788999999987655433 5567777776 7888888
No 194
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.11 E-value=2.4e-05 Score=70.42 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhhC
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~gl 121 (273)
++.+++|+|++|+|||||++.|.|.
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3448999999999999999999986
No 195
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=98.09 E-value=1.7e-06 Score=70.15 Aligned_cols=32 Identities=28% Similarity=0.388 Sum_probs=26.1
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhh
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~g 120 (273)
+++..+++.+| +.+|+|||||||||++.+|.-
T Consensus 14 ~~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 14 HSDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp BSSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred CcceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 44555666655 999999999999999999974
No 196
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.07 E-value=1.6e-06 Score=73.15 Aligned_cols=32 Identities=22% Similarity=0.158 Sum_probs=28.3
Q ss_pred eeeEEcCCcEEEEEcCCCChHHHHHHHHhhCc
Q 024032 91 GGMDIPPVITILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 91 is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
+--++++|.+++|+|++||||||+.++|++.+
T Consensus 14 ~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 14 LVPRGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 33467889999999999999999999999875
No 197
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=98.05 E-value=5.8e-07 Score=84.36 Aligned_cols=55 Identities=9% Similarity=-0.045 Sum_probs=48.4
Q ss_pred CCceEEEEEEEEeecCCeeeecccee--------------eeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQ--------------KGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~--------------~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
.+.++|+|+++.|+.. +.+ |+ |+.+.+.+|+.++|+||+|+|||||++.|++...
T Consensus 131 ~~ri~Fe~ltp~yP~e-r~~----Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 131 RNKILFENLTPLHANS-RLR----MERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp TTSCCTTTSCEESCCS-BCC----CCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred cCCceeccccccCCCC-ccc----cccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 4578899999999753 445 88 8999999999999999999999999999999865
No 198
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.04 E-value=1.8e-06 Score=79.60 Aligned_cols=41 Identities=22% Similarity=0.359 Sum_probs=34.8
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCC
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSG 136 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~ 136 (273)
+++.+++|+|++|||||||+|.|.|.+. ..|.|.+.+.+..
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~ 113 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPS 113 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCC
Confidence 3467999999999999999999999888 8888888776553
No 199
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.03 E-value=1.8e-06 Score=71.12 Aligned_cols=40 Identities=23% Similarity=0.265 Sum_probs=32.2
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhhCccCcc--EEEECCeeC
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYSVLSRSG--LVLFAQTSS 135 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G--~I~i~g~~i 135 (273)
++|++++|+|++||||||+.++|++.+...| .+.+++..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHH
Confidence 4789999999999999999999999775445 666666554
No 200
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.91 E-value=1.2e-05 Score=81.60 Aligned_cols=29 Identities=17% Similarity=0.242 Sum_probs=24.8
Q ss_pred EcCCcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 95 IPPVITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 95 i~~Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
+..|+.+.|+||+||||||++.++.+...
T Consensus 106 l~~~~~vii~gpTGSGKTtllp~ll~~~~ 134 (773)
T 2xau_A 106 YQNNQIMVFVGETGSGKTTQIPQFVLFDE 134 (773)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HhCCCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 56788999999999999999998876543
No 201
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.87 E-value=2.5e-06 Score=83.14 Aligned_cols=45 Identities=22% Similarity=0.214 Sum_probs=40.1
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCe
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQT 133 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~ 133 (273)
++++++++ +|++++|+||||+|||||+++|++.+. ..|.|.+.|.
T Consensus 99 l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~ 144 (543)
T 3m6a_A 99 VQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGV 144 (543)
T ss_dssp HHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-
T ss_pred HHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEeccc
Confidence 78888888 899999999999999999999999988 8888877663
No 202
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.87 E-value=5.9e-06 Score=71.63 Aligned_cols=37 Identities=24% Similarity=0.380 Sum_probs=27.3
Q ss_pred eeeeeeEEc---CCcEEEEEcCCCChHHHHHHHHhhCccC
Q 024032 88 IQKGGMDIP---PVITILLMGFSGSGKSSLVNLMYSVLSR 124 (273)
Q Consensus 88 L~~is~~i~---~Ge~~aivGpnGsGKSTLl~ll~gl~~~ 124 (273)
|.++||.+. +|.+++|.||+||||||+++.|+..+..
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 777777776 9999999999999999999999987654
No 203
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.86 E-value=4.8e-06 Score=70.64 Aligned_cols=43 Identities=26% Similarity=0.223 Sum_probs=37.1
Q ss_pred eEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-Ccc--EEEECCeeC
Q 024032 93 MDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSG--LVLFAQTSS 135 (273)
Q Consensus 93 ~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G--~I~i~g~~i 135 (273)
+.+++|.+++|+|++||||||+.+.|++.+. ..| .+.+++..+
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 4567899999999999999999999999888 788 788876544
No 204
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.85 E-value=6.8e-05 Score=64.47 Aligned_cols=27 Identities=37% Similarity=0.508 Sum_probs=23.0
Q ss_pred EEEEEcCCCChHHHHHHHHhhCcc-Ccc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVLS-RSG 126 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~~-~~G 126 (273)
.++|+|++|+|||||++.|+|... .++
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 579999999999999999999765 544
No 205
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.84 E-value=9.1e-06 Score=69.09 Aligned_cols=32 Identities=28% Similarity=0.388 Sum_probs=25.8
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhh
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~g 120 (273)
+.+.++++.+| +.+|+|||||||||++.+|.-
T Consensus 14 ~~~~~i~f~~~-~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 14 HSDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp BSSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ccceEEEeCCC-eEEEEcCCCCCHHHHHHHHHH
Confidence 44555666665 999999999999999999863
No 206
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.82 E-value=7.1e-06 Score=77.78 Aligned_cols=46 Identities=15% Similarity=0.195 Sum_probs=40.8
Q ss_pred eeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCC
Q 024032 89 QKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSG 136 (273)
Q Consensus 89 ~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~ 136 (273)
++++|+ ++++++++|+|||||||++..|++.+. ..|.|.+.+.|+.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~ 137 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ 137 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSS
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecccc
Confidence 567777 899999999999999999999999998 8889998777654
No 207
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.80 E-value=1.1e-05 Score=66.79 Aligned_cols=38 Identities=26% Similarity=0.308 Sum_probs=31.6
Q ss_pred eeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEE
Q 024032 92 GMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVL 129 (273)
Q Consensus 92 s~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~ 129 (273)
.+...+|.+++|+|++||||||+.+.|+..+. ..|.+.
T Consensus 7 ~~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~ 45 (186)
T 2yvu_A 7 YKCIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVE 45 (186)
T ss_dssp -CCCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 34456899999999999999999999999887 666653
No 208
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.79 E-value=1.6e-05 Score=65.94 Aligned_cols=32 Identities=19% Similarity=0.430 Sum_probs=20.7
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhh
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~g 120 (273)
+++++++.++. .++|+|++|+|||||++.+.+
T Consensus 14 l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 14 LASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ----------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 88999998887 779999999999999999987
No 209
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.79 E-value=5.3e-06 Score=74.94 Aligned_cols=47 Identities=17% Similarity=0.120 Sum_probs=40.8
Q ss_pred ee-eeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCC
Q 024032 89 QK-GGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSG 136 (273)
Q Consensus 89 ~~-is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~ 136 (273)
++ ++|+.+ |++++++|+||+||||++..|++.+. ..|.|.+.+.+..
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~ 137 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVY 137 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 45 788876 99999999999999999999999998 8889988776653
No 210
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.78 E-value=1.1e-05 Score=67.72 Aligned_cols=22 Identities=36% Similarity=0.537 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
+++|+|||||||||+.++|+++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l 25 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL 25 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 6899999999999999999983
No 211
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.77 E-value=1.2e-05 Score=66.77 Aligned_cols=32 Identities=34% Similarity=0.650 Sum_probs=26.3
Q ss_pred eeeeEEcCCcEEEEEcCCCChHHHHHHHHhhC
Q 024032 90 KGGMDIPPVITILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 90 ~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl 121 (273)
++|++.++|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57889999999999999999999999999864
No 212
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.75 E-value=1.1e-05 Score=68.07 Aligned_cols=29 Identities=24% Similarity=0.465 Sum_probs=25.4
Q ss_pred EEcCCcEEEEEcCCCChHHHHHHHHhhCc
Q 024032 94 DIPPVITILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 94 ~i~~Ge~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
...+|.+++|+||||||||||.+.|+..+
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 35689999999999999999999998755
No 213
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.74 E-value=5.7e-05 Score=68.41 Aligned_cols=111 Identities=8% Similarity=0.048 Sum_probs=67.3
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeCCCCCccEEEEeccchhhhccCCcccccccccC
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGF 167 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en~~~ 167 (273)
|+.+.--+++|+++.|.|++|+|||||+.-++.-.-..| ..+.|+.-+.
T Consensus 58 LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g-------------~~vl~~slE~------------------ 106 (315)
T 3bh0_A 58 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDND-------------DVVNLHSLEM------------------ 106 (315)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTT-------------CEEEEEESSS------------------
T ss_pred HHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC-------------CeEEEEECCC------------------
Confidence 777776699999999999999999999888774322111 1223322111
Q ss_pred CHHHHHHHHHHh----------ccc--CCHHHHHHHH-h---cCCCCEEEEcCcCCCCCHH-HHHHHHHhcCCcE--EEE
Q 024032 168 NYNRVHEGLEEL----------SSW--MSEGVHHNQR-C---LRSDDCALMKNDAEIDDLK-SSPKYVLRRVDFA--MVV 228 (273)
Q Consensus 168 ~~~~~~~~l~~~----------~~~--LSgGqkq~~r-~---l~~p~iLlLDEPts~LD~~-~~l~~l~~~~g~t--iii 228 (273)
+.+++...+... ... ||.+++++.. + +.++++++.|+|...++-. ..++.+.++.+.. +|+
T Consensus 107 s~~~l~~R~~~~~~~i~~~~l~~~~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~~~~i~~~i~~l~~~~~~~~~lVV 186 (315)
T 3bh0_A 107 GKKENIKRLIVTAGSINAQKIKAARRDFASEDWGKLSMAIGEISNSNINIFDKAGQSVNYIWSKTRQTKRKNPGKRVIVM 186 (315)
T ss_dssp CHHHHHHHHHHHHTTCCHHHHHSCHHHHCSSCHHHHHHHHHHHHTSCEEEECCSCCBHHHHHHHHHHHHHTSSSCCEEEE
T ss_pred CHHHHHHHHHHHHcCCCHHHHhcCCCCCCHHHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEE
Confidence 111111111110 122 7888877652 1 5578899999986443332 4466666665777 888
Q ss_pred c
Q 024032 229 S 229 (273)
Q Consensus 229 v 229 (273)
|
T Consensus 187 I 187 (315)
T 3bh0_A 187 I 187 (315)
T ss_dssp E
T ss_pred E
Confidence 8
No 214
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.74 E-value=1.2e-06 Score=81.26 Aligned_cols=57 Identities=18% Similarity=0.150 Sum_probs=34.0
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCe
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQT 133 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~ 133 (273)
+.+.+.++...|. ++.+ +++++|.| +|+|++|+|||||++.|.+... ..|.+...+.
T Consensus 16 ~~v~~~~l~~~~~--~k~~----~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~ 73 (361)
T 2qag_A 16 GYVGFANLPNQVH--RKSV----KKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIPGAAE 73 (361)
T ss_dssp -----CCHHHHHH--THHH----HHCCEECE------EECCCTTSCHHHHHHHHTTCCC-----------
T ss_pred ceEEeccchHHhC--Ceee----cCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCc
Confidence 4566777766553 3445 88888876 9999999999999999998765 5555544443
No 215
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.68 E-value=2e-05 Score=64.38 Aligned_cols=27 Identities=26% Similarity=0.368 Sum_probs=23.0
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhhCc
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
++|..++|+|++|+|||||++.++|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367789999999999999999999853
No 216
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.67 E-value=2e-05 Score=65.96 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
+++|+|+|||||||+.+.|+++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFREL 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHHHC
Confidence 6899999999999999999983
No 217
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.61 E-value=1.5e-05 Score=66.53 Aligned_cols=32 Identities=19% Similarity=0.443 Sum_probs=29.2
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhh
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~g 120 (273)
++++||..+++ .++|+|++|+|||||++.+.+
T Consensus 16 l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 16 LQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred HHHhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence 88999998887 578999999999999999986
No 218
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.61 E-value=4.3e-05 Score=62.38 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|++|+|||||++.++|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
No 219
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.57 E-value=5.3e-05 Score=71.64 Aligned_cols=36 Identities=19% Similarity=0.262 Sum_probs=30.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhCc------------c-CccEEEECCeeC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVL------------S-RSGLVLFAQTSS 135 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~------------~-~~G~I~i~g~~i 135 (273)
.++|+|+||+|||||+|.|+|.. . ..|.+.++|..+
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~ 230 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY 230 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE
Confidence 79999999999999999999974 1 468888888754
No 220
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.56 E-value=0.00067 Score=61.58 Aligned_cols=24 Identities=21% Similarity=0.479 Sum_probs=22.4
Q ss_pred EEEEEcCCCChHHHHHHHHhhCcc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
.+.|.||+|+|||||++.+++...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh
Confidence 789999999999999999998776
No 221
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.55 E-value=5e-05 Score=63.28 Aligned_cols=36 Identities=25% Similarity=0.519 Sum_probs=28.6
Q ss_pred cEEEEEcCCCChHHHHHHHHhhCcc-C---ccEEEECCee
Q 024032 99 ITILLMGFSGSGKSSLVNLMYSVLS-R---SGLVLFAQTS 134 (273)
Q Consensus 99 e~~aivGpnGsGKSTLl~ll~gl~~-~---~G~I~i~g~~ 134 (273)
.+++|+|+||||||||++.|.+.+. . -|.|..++.+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 5889999999999999999998765 3 4677765543
No 222
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.52 E-value=4.5e-05 Score=61.51 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=21.6
Q ss_pred EEEEEcCCCChHHHHHHHHhhCcc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
.++|+|++|+|||||++.+.|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 689999999999999999998643
No 223
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.52 E-value=4.8e-06 Score=75.73 Aligned_cols=40 Identities=18% Similarity=0.150 Sum_probs=35.5
Q ss_pred eeeeeeEEcCCcE--EEEEcCCCChHHHHHHHHhhCcc-CccE
Q 024032 88 IQKGGMDIPPVIT--ILLMGFSGSGKSSLVNLMYSVLS-RSGL 127 (273)
Q Consensus 88 L~~is~~i~~Ge~--~aivGpnGsGKSTLl~ll~gl~~-~~G~ 127 (273)
++.++..++.|++ +.|.||+|+||||+++++++.+. ..+.
T Consensus 34 ~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~ 76 (340)
T 1sxj_C 34 ITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYS 76 (340)
T ss_dssp HHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCcc
Confidence 8888999999998 99999999999999999999865 5443
No 224
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.51 E-value=1.3e-05 Score=74.38 Aligned_cols=37 Identities=24% Similarity=0.373 Sum_probs=33.2
Q ss_pred ceeeeeeEEcCCcE--EEEEcCCCChHHHHHHHHhhCcc
Q 024032 87 GIQKGGMDIPPVIT--ILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 87 ~L~~is~~i~~Ge~--~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
+++.+++.+++|++ ++|+||+||||||+.++|++.+.
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 47888899999998 99999999999999999998653
No 225
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.50 E-value=3.6e-05 Score=64.46 Aligned_cols=25 Identities=40% Similarity=0.485 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCChHHHHHHHHhhCc
Q 024032 98 VITILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 98 Ge~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
..+++|+|++||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998754
No 226
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.50 E-value=6e-05 Score=69.70 Aligned_cols=31 Identities=23% Similarity=0.416 Sum_probs=27.3
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHh
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMY 119 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~ 119 (273)
+++..+++.+| +.+|+|||||||||++.+|.
T Consensus 16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 66777787775 99999999999999999986
No 227
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.46 E-value=7.8e-05 Score=69.12 Aligned_cols=36 Identities=22% Similarity=0.373 Sum_probs=28.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhCcc------------CccEEEECCeeC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVLS------------RSGLVLFAQTSS 135 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~~------------~~G~I~i~g~~i 135 (273)
+++|+|++|||||||+|.|+|... ..|.|.++|.++
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v 228 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKI 228 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEE
Confidence 489999999999999999999653 247788877653
No 228
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.46 E-value=6.9e-05 Score=65.09 Aligned_cols=33 Identities=33% Similarity=0.468 Sum_probs=23.4
Q ss_pred eeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 89 QKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 89 ~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
+++++.+++| +.|.||+|+|||||+++|++...
T Consensus 38 ~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 38 QKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp -----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 3334444444 78999999999999999998654
No 229
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.45 E-value=5.6e-05 Score=62.03 Aligned_cols=25 Identities=16% Similarity=0.324 Sum_probs=22.2
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhh
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~g 120 (273)
.+|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999984
No 230
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=97.43 E-value=9.8e-05 Score=68.45 Aligned_cols=35 Identities=14% Similarity=0.159 Sum_probs=29.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEEC
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFA 131 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~ 131 (273)
.+..++|+||||||||||++.|.+... ..+.|.+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~ 69 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIII 69 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEE
Confidence 567899999999999999999998766 77777664
No 231
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.40 E-value=7.3e-05 Score=70.20 Aligned_cols=40 Identities=18% Similarity=0.333 Sum_probs=31.3
Q ss_pred EEcCCcEEEEEcCCCChHHHHHHHHhhC-----------cc-CccEEEECCe
Q 024032 94 DIPPVITILLMGFSGSGKSSLVNLMYSV-----------LS-RSGLVLFAQT 133 (273)
Q Consensus 94 ~i~~Ge~~aivGpnGsGKSTLl~ll~gl-----------~~-~~G~I~i~g~ 133 (273)
.+..|..++|||+||+|||||+|.|+|. +. ..|.+.+.+.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 4567788999999999999999999997 33 5677776653
No 232
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.39 E-value=8.9e-05 Score=63.84 Aligned_cols=27 Identities=30% Similarity=0.397 Sum_probs=23.8
Q ss_pred EEcCCcEEEEEcCCCChHHHHHHHHhh
Q 024032 94 DIPPVITILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 94 ~i~~Ge~~aivGpnGsGKSTLl~ll~g 120 (273)
+-++|.+++|+|++||||||+.+.|++
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 457889999999999999999999986
No 233
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.34 E-value=9.4e-05 Score=60.66 Aligned_cols=23 Identities=26% Similarity=0.612 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHhhCc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
.++|+|++|+|||||++.+++..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999999864
No 234
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.33 E-value=0.0001 Score=59.34 Aligned_cols=23 Identities=26% Similarity=0.193 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHhhCc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
+++|.|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998653
No 235
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.33 E-value=8.1e-05 Score=64.98 Aligned_cols=41 Identities=27% Similarity=0.375 Sum_probs=31.9
Q ss_pred EEcCCcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeC
Q 024032 94 DIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSS 135 (273)
Q Consensus 94 ~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i 135 (273)
..+++.++.|+|++||||||+.+.|+..+. .+.+.+++..+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~-~~~~~~~~D~~ 68 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ-GNIVIIDGDSF 68 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT-TCCEEECGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC-CCcEEEecHHH
Confidence 345677999999999999999999987543 34566777554
No 236
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.31 E-value=0.00013 Score=59.37 Aligned_cols=25 Identities=44% Similarity=0.518 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCChHHHHHHHHhhCc
Q 024032 98 VITILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 98 Ge~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
|.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999998744
No 237
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.31 E-value=0.00054 Score=64.82 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 98 VITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 98 Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
+..+.|.||+|+|||||+++|++.+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~ 155 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVV 155 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999998653
No 238
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.29 E-value=6.2e-05 Score=65.73 Aligned_cols=31 Identities=23% Similarity=0.330 Sum_probs=25.1
Q ss_pred CcEEEEEcCCCChHHHHHHHHh---hCcc-CccEE
Q 024032 98 VITILLMGFSGSGKSSLVNLMY---SVLS-RSGLV 128 (273)
Q Consensus 98 Ge~~aivGpnGsGKSTLl~ll~---gl~~-~~G~I 128 (273)
.-+++|.||+||||||+.+.|+ |+.. +.|.+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~ 43 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAM 43 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcH
Confidence 3489999999999999999998 4444 56655
No 239
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.26 E-value=6.1e-05 Score=63.16 Aligned_cols=24 Identities=29% Similarity=0.524 Sum_probs=22.3
Q ss_pred EEEEEcCCCChHHHHHHHHhhCcc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
+++|.|++||||||+++.|...+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998776
No 240
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.24 E-value=0.00016 Score=59.48 Aligned_cols=26 Identities=19% Similarity=0.348 Sum_probs=23.1
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhhC
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~gl 121 (273)
+++.++.|.|++||||||+.+.|+..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46779999999999999999999863
No 241
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.24 E-value=0.00016 Score=59.11 Aligned_cols=26 Identities=19% Similarity=0.347 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 98 VITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 98 Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
|.+++|.|++||||||+.+.|+..+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 56899999999999999999987544
No 242
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.22 E-value=0.00019 Score=60.68 Aligned_cols=24 Identities=33% Similarity=0.362 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhh
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~g 120 (273)
.+-+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999987
No 243
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.20 E-value=0.00017 Score=57.68 Aligned_cols=19 Identities=47% Similarity=0.868 Sum_probs=18.2
Q ss_pred EEEEEcCCCChHHHHHHHH
Q 024032 100 TILLMGFSGSGKSSLVNLM 118 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll 118 (273)
+++|.||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 244
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.19 E-value=0.00014 Score=69.07 Aligned_cols=39 Identities=23% Similarity=0.285 Sum_probs=34.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeC
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSS 135 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i 135 (273)
++.+++++||+||||||++..|++.+. ..+.|.+-+.++
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 578999999999999999999999988 888888765554
No 245
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.16 E-value=0.0002 Score=59.18 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHhhCc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999744
No 246
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.15 E-value=0.0014 Score=61.90 Aligned_cols=36 Identities=8% Similarity=0.026 Sum_probs=30.1
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
|+.+.--+++|+++.|.|++|+|||||+.-++.-..
T Consensus 190 LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a 225 (444)
T 2q6t_A 190 LDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAA 225 (444)
T ss_dssp HHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred hhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 666555589999999999999999999988876443
No 247
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.14 E-value=0.00015 Score=59.43 Aligned_cols=25 Identities=36% Similarity=0.416 Sum_probs=22.4
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhh
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~g 120 (273)
.++.++.|.|++||||||+.+.|+.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence 4677899999999999999999984
No 248
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.14 E-value=0.00021 Score=62.50 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHhhCc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
+++|+||||||||||.+.|++.+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999998743
No 249
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.13 E-value=0.00021 Score=60.16 Aligned_cols=21 Identities=38% Similarity=0.721 Sum_probs=18.6
Q ss_pred EEEEcCCCChHHHHHHHHhhC
Q 024032 101 ILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 101 ~aivGpnGsGKSTLl~ll~gl 121 (273)
+.|+||||||||||++.|..-
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 689999999999999988653
No 250
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.12 E-value=0.00027 Score=58.48 Aligned_cols=31 Identities=35% Similarity=0.434 Sum_probs=25.1
Q ss_pred CcEEEEEcCCCChHHHHHHHHhhCccCccEEEECC
Q 024032 98 VITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQ 132 (273)
Q Consensus 98 Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g 132 (273)
..+++|+|++||||||+.+.|+.. |...++.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~----g~~~id~ 38 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW----GYPVLDL 38 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT----TCCEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC----CCEEEcc
Confidence 358999999999999999999974 5555543
No 251
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.10 E-value=0.00018 Score=73.18 Aligned_cols=31 Identities=26% Similarity=0.423 Sum_probs=28.5
Q ss_pred eEEcCCcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 93 MDIPPVITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 93 ~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
|.+++|+.+.|+||||+|||||+++|++.+.
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 4688999999999999999999999999765
No 252
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.10 E-value=0.00031 Score=58.26 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhhCc
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
+|-+++|.|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999998754
No 253
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.10 E-value=0.00027 Score=57.87 Aligned_cols=25 Identities=28% Similarity=0.534 Sum_probs=21.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhhC
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~gl 121 (273)
.+..+.|+||+||||||+.+.|+..
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3568899999999999999999854
No 254
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.07 E-value=0.0002 Score=59.53 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=22.4
Q ss_pred cEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 99 ITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 99 e~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
.+++|+|++|||||||++.|.+.+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 3789999999999999999998765
No 255
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.06 E-value=0.00024 Score=57.92 Aligned_cols=23 Identities=43% Similarity=0.729 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHhhCc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
+++|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998643
No 256
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.06 E-value=0.00031 Score=56.89 Aligned_cols=22 Identities=36% Similarity=0.514 Sum_probs=20.1
Q ss_pred cEEEEEcCCCChHHHHHHHHhh
Q 024032 99 ITILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 99 e~~aivGpnGsGKSTLl~ll~g 120 (273)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3789999999999999999986
No 257
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.04 E-value=0.00035 Score=58.07 Aligned_cols=32 Identities=31% Similarity=0.342 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhhCccCccEE
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYSVLSRSGLV 128 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I 128 (273)
+|.+++|.|+.||||||+.+.|+..+...|.+
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~ 34 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIELKRDV 34 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTTSCE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhcCCE
Confidence 46789999999999999999999866533433
No 258
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.04 E-value=0.00028 Score=61.97 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHhhCc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
.++|+|++|||||||++.|.|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999864
No 259
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.04 E-value=0.00034 Score=57.55 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=23.1
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhhC
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++.+++|.|+.||||||+.+.|+..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 46779999999999999999999853
No 260
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.01 E-value=0.00038 Score=58.11 Aligned_cols=27 Identities=30% Similarity=0.345 Sum_probs=24.0
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhhCc
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
.+|.+++|.|+.||||||+.+.|+..+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999998654
No 261
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.01 E-value=0.00038 Score=58.15 Aligned_cols=29 Identities=24% Similarity=0.258 Sum_probs=24.6
Q ss_pred EcCCcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 95 IPPVITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 95 i~~Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
.++|-+++|.|+.||||||+.+.|+..+.
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35788999999999999999999986543
No 262
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.96 E-value=0.0019 Score=55.76 Aligned_cols=33 Identities=9% Similarity=0.143 Sum_probs=24.8
Q ss_pred CCCCEEEEcCcCCCCCHH--HHHHHHHhcCCcEEEEc
Q 024032 195 RSDDCALMKNDAEIDDLK--SSPKYVLRRVDFAMVVS 229 (273)
Q Consensus 195 ~~p~iLlLDEPts~LD~~--~~l~~l~~~~g~tiiiv 229 (273)
.+++++++||.- .|+.. +.+..+... |.+||++
T Consensus 88 ~~~dvViIDEaQ-~l~~~~ve~l~~L~~~-gi~Vil~ 122 (223)
T 2b8t_A 88 DETKVIGIDEVQ-FFDDRICEVANILAEN-GFVVIIS 122 (223)
T ss_dssp TTCCEEEECSGG-GSCTHHHHHHHHHHHT-TCEEEEE
T ss_pred CCCCEEEEecCc-cCcHHHHHHHHHHHhC-CCeEEEE
Confidence 358999999974 36554 467777665 8999998
No 263
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.96 E-value=0.00045 Score=56.54 Aligned_cols=23 Identities=17% Similarity=0.427 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCChHHHHHHHHhh
Q 024032 98 VITILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 98 Ge~~aivGpnGsGKSTLl~ll~g 120 (273)
+.+++|.|++||||||+.+.|+.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999875
No 264
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.95 E-value=0.00036 Score=62.34 Aligned_cols=36 Identities=25% Similarity=0.436 Sum_probs=27.1
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhhCccCccEEEECC
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQ 132 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g 132 (273)
.++.++.|.|||||||||+.+.|+.-+ ..|.+.+++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~-~~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEET-QGNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHT-TTCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh-CCCeEEEec
Confidence 346689999999999999999997532 234566654
No 265
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.94 E-value=0.00042 Score=56.64 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHHHHHHHHhhCcc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
++.|.|++||||||+.+.|+..+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987544
No 266
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.93 E-value=0.00046 Score=56.41 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHHHHHhhCc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
.++|+|++|+|||||++.+.+-.
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 67999999999999999999853
No 267
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.90 E-value=0.0002 Score=59.20 Aligned_cols=28 Identities=25% Similarity=0.409 Sum_probs=24.0
Q ss_pred EEcCCcEEEEEcCCCChHHHHHHHHhhC
Q 024032 94 DIPPVITILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 94 ~i~~Ge~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++.+.+++|.|+.||||||+.+.|+..
T Consensus 8 ~~~~~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 8 DLRKCKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp HHHHSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3456779999999999999999999864
No 268
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.90 E-value=0.00041 Score=57.61 Aligned_cols=22 Identities=32% Similarity=0.357 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
+++|.|++||||||+.+.|+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 7899999999999999999874
No 269
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.89 E-value=0.0013 Score=59.87 Aligned_cols=32 Identities=25% Similarity=0.272 Sum_probs=28.9
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhh
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~g 120 (273)
+++..+++ .|.-++|.|+||+|||||...+.+
T Consensus 135 ~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 135 LHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 77877887 788999999999999999998886
No 270
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.87 E-value=0.00041 Score=62.00 Aligned_cols=29 Identities=24% Similarity=0.410 Sum_probs=25.1
Q ss_pred EEcCCcEEEEEcCCCChHHHHHHHHhhCc
Q 024032 94 DIPPVITILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 94 ~i~~Ge~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
.++++..+.|.||+|+|||||+++|++..
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 35677789999999999999999999854
No 271
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.86 E-value=0.00057 Score=54.03 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5799999999999999999874
No 272
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.85 E-value=0.00041 Score=56.50 Aligned_cols=25 Identities=20% Similarity=0.175 Sum_probs=17.8
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhhC
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~gl 121 (273)
++.++.|.|++||||||+.+.|+..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 5678999999999999999999854
No 273
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.84 E-value=0.00058 Score=56.19 Aligned_cols=24 Identities=38% Similarity=0.570 Sum_probs=21.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhCcc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
+++|.|+.||||||+.+.|...+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987654
No 274
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.84 E-value=0.00059 Score=53.52 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++++|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999874
No 275
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.83 E-value=0.00065 Score=53.44 Aligned_cols=23 Identities=30% Similarity=0.457 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhCc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
.++|+|+.|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999998753
No 276
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.83 E-value=0.00052 Score=54.38 Aligned_cols=23 Identities=39% Similarity=0.626 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhhCc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
.++|+|++|+|||||++.+.|..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 47999999999999999998743
No 277
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.83 E-value=0.00065 Score=53.42 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5799999999999999998863
No 278
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.82 E-value=0.0012 Score=54.05 Aligned_cols=21 Identities=33% Similarity=0.445 Sum_probs=18.5
Q ss_pred EEEEEcCCCChHHHHHHHHhh
Q 024032 100 TILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~g 120 (273)
.++|+|++|+|||||++.+.+
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 679999999999999976655
No 279
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.81 E-value=0.00068 Score=53.70 Aligned_cols=21 Identities=38% Similarity=0.515 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhh
Q 024032 100 TILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~g 120 (273)
.++|+|+.|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 579999999999999999987
No 280
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.81 E-value=0.00066 Score=54.16 Aligned_cols=22 Identities=36% Similarity=0.610 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 5799999999999999999874
No 281
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.81 E-value=0.00062 Score=53.62 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5799999999999999999874
No 282
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.80 E-value=0.00073 Score=57.17 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhhC
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~gl 121 (273)
+|-+++|+|+.||||||+.+.|+..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5678999999999999999999864
No 283
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.79 E-value=0.00065 Score=53.82 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhCc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
.++|+|+.|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 57999999999999999998753
No 284
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.79 E-value=0.00046 Score=59.27 Aligned_cols=27 Identities=22% Similarity=0.375 Sum_probs=23.0
Q ss_pred EEcCCcEEEEEcCCCChHHHHHHHHhh
Q 024032 94 DIPPVITILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 94 ~i~~Ge~~aivGpnGsGKSTLl~ll~g 120 (273)
.+..|+.+++.||+||||||++.++..
T Consensus 72 ~i~~g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 72 AISQNSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred HHhcCCEEEEEeCCCCCcHHhHHHHHh
Confidence 346789999999999999999887754
No 285
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.79 E-value=0.00087 Score=53.70 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhhC
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~gl 121 (273)
+.-.++|+|+.|+|||||++.+.+-
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3447899999999999999999873
No 286
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.78 E-value=0.00069 Score=57.68 Aligned_cols=25 Identities=24% Similarity=0.517 Sum_probs=21.2
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhh
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~g 120 (273)
.++.+++|.|+.||||||+.+.|+.
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHH
Confidence 3556899999999999999999985
No 287
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.78 E-value=0.001 Score=61.73 Aligned_cols=35 Identities=23% Similarity=0.415 Sum_probs=27.6
Q ss_pred CcEEEEEcCCCChHHHHHHHHhhC-----------cc-CccEEEECC
Q 024032 98 VITILLMGFSGSGKSSLVNLMYSV-----------LS-RSGLVLFAQ 132 (273)
Q Consensus 98 Ge~~aivGpnGsGKSTLl~ll~gl-----------~~-~~G~I~i~g 132 (273)
|-.++|||.+|+|||||+|.|++- +. ..|.+.+.+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 346899999999999999999982 22 457777655
No 288
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.78 E-value=0.00063 Score=53.92 Aligned_cols=22 Identities=45% Similarity=0.543 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4799999999999999999874
No 289
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.78 E-value=0.00067 Score=53.65 Aligned_cols=22 Identities=36% Similarity=0.463 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999864
No 290
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.77 E-value=0.00059 Score=55.71 Aligned_cols=22 Identities=36% Similarity=0.665 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|++|+|||||++.+.+-
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999874
No 291
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.77 E-value=0.00066 Score=60.20 Aligned_cols=23 Identities=43% Similarity=0.538 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHhhCc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
.++|+|++|+|||||++.++|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999853
No 292
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.77 E-value=0.00034 Score=67.16 Aligned_cols=32 Identities=31% Similarity=0.489 Sum_probs=27.4
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhC
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl 121 (273)
++++++.+++| +.|+||+|+|||||+++|++.
T Consensus 41 ~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 41 FNRIGARMPKG--ILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp HHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHH
T ss_pred HhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHH
Confidence 56666777777 789999999999999999984
No 293
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.77 E-value=0.00074 Score=53.65 Aligned_cols=22 Identities=36% Similarity=0.585 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|++|+|||||++.+.+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4799999999999999999864
No 294
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.77 E-value=0.00074 Score=59.73 Aligned_cols=30 Identities=23% Similarity=0.382 Sum_probs=25.5
Q ss_pred cEEEEEcCCCChHHHHHHHHhhCcc-CccEE
Q 024032 99 ITILLMGFSGSGKSSLVNLMYSVLS-RSGLV 128 (273)
Q Consensus 99 e~~aivGpnGsGKSTLl~ll~gl~~-~~G~I 128 (273)
..+.|.||+|+||||++++|++.+. ..|.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 5789999999999999999999876 55533
No 295
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.76 E-value=0.00076 Score=54.03 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5799999999999999999874
No 296
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.76 E-value=0.00076 Score=53.51 Aligned_cols=22 Identities=32% Similarity=0.379 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5799999999999999999864
No 297
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.76 E-value=0.00069 Score=53.49 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999863
No 298
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.75 E-value=0.00072 Score=54.14 Aligned_cols=22 Identities=41% Similarity=0.611 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5799999999999999999864
No 299
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.75 E-value=0.00073 Score=58.73 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=21.4
Q ss_pred EEEEEcCCCChHHHHHHHHhhCcc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
.++|||++|+|||||+|.|.|--.
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~~ 46 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQRR 46 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 679999999999999999998543
No 300
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.74 E-value=0.00069 Score=55.33 Aligned_cols=23 Identities=39% Similarity=0.442 Sum_probs=20.8
Q ss_pred cEEEEEcCCCChHHHHHHHHhhC
Q 024032 99 ITILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 99 e~~aivGpnGsGKSTLl~ll~gl 121 (273)
-.++|+|+.|+|||||++.+.+-
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999874
No 301
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.74 E-value=0.00078 Score=53.94 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5799999999999999999875
No 302
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.74 E-value=0.00071 Score=54.97 Aligned_cols=22 Identities=36% Similarity=0.603 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999875
No 303
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.74 E-value=0.00065 Score=54.42 Aligned_cols=22 Identities=41% Similarity=0.525 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999874
No 304
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.73 E-value=0.00078 Score=56.60 Aligned_cols=21 Identities=33% Similarity=0.680 Sum_probs=19.0
Q ss_pred EEEEEcCCCChHHHHHHHHhh
Q 024032 100 TILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~g 120 (273)
.++|.||+||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999964
No 305
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.70 E-value=0.00081 Score=54.32 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5799999999999999999874
No 306
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.70 E-value=0.00098 Score=55.48 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhhC
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~gl 121 (273)
.+-+++|+|+.||||||+.+.|+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4558999999999999999999864
No 307
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.70 E-value=0.00073 Score=57.26 Aligned_cols=25 Identities=20% Similarity=0.405 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhhC
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~gl 121 (273)
.+.++.|+||+||||||+.+.|+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4457899999999999999999854
No 308
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.70 E-value=0.00097 Score=55.43 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=21.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhh
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~g 120 (273)
+..+++|.|+.||||||+.+.|+.
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 445899999999999999999974
No 309
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.70 E-value=0.00083 Score=53.07 Aligned_cols=22 Identities=41% Similarity=0.449 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5799999999999999999863
No 310
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.69 E-value=0.00088 Score=54.79 Aligned_cols=23 Identities=35% Similarity=0.611 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHhhCc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
+++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998754
No 311
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.69 E-value=0.00092 Score=54.30 Aligned_cols=22 Identities=36% Similarity=0.391 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5799999999999999999985
No 312
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.67 E-value=0.00092 Score=54.54 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCChHHHHHHHHhh
Q 024032 98 VITILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 98 Ge~~aivGpnGsGKSTLl~ll~g 120 (273)
..+++|.|+.||||||+.+.|+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999975
No 313
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.66 E-value=0.0008 Score=54.23 Aligned_cols=22 Identities=18% Similarity=0.395 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
+++|.|++||||||+.+.|+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999853
No 314
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.66 E-value=0.00085 Score=54.34 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999999874
No 315
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.66 E-value=0.001 Score=52.85 Aligned_cols=21 Identities=29% Similarity=0.700 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhh
Q 024032 100 TILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~g 120 (273)
.++|+|+.|+|||||++.+.+
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999976
No 316
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.65 E-value=0.00095 Score=56.13 Aligned_cols=21 Identities=29% Similarity=0.591 Sum_probs=19.0
Q ss_pred EEEEEcCCCChHHHHHHHHhh
Q 024032 100 TILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~g 120 (273)
.++|.||+||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999974
No 317
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.65 E-value=0.001 Score=53.83 Aligned_cols=22 Identities=32% Similarity=0.392 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999873
No 318
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.64 E-value=0.001 Score=54.41 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5799999999999999999874
No 319
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.64 E-value=0.00059 Score=55.07 Aligned_cols=23 Identities=26% Similarity=0.641 Sum_probs=20.1
Q ss_pred CcEEEEEcCCCChHHHHHHHHhh
Q 024032 98 VITILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 98 Ge~~aivGpnGsGKSTLl~ll~g 120 (273)
.-.++|+|++|+|||||++.+.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34789999999999999999874
No 320
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.63 E-value=0.0011 Score=53.33 Aligned_cols=22 Identities=41% Similarity=0.596 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
+++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5799999999999999999863
No 321
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.63 E-value=0.00099 Score=52.61 Aligned_cols=21 Identities=24% Similarity=0.562 Sum_probs=19.2
Q ss_pred EEEEEcCCCChHHHHHHHHhh
Q 024032 100 TILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~g 120 (273)
.++|+|++|+|||||++.+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 378999999999999999976
No 322
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.62 E-value=0.0012 Score=52.96 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5799999999999999999864
No 323
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.61 E-value=0.0011 Score=53.38 Aligned_cols=23 Identities=43% Similarity=0.622 Sum_probs=20.9
Q ss_pred cEEEEEcCCCChHHHHHHHHhhC
Q 024032 99 ITILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 99 e~~aivGpnGsGKSTLl~ll~gl 121 (273)
++++|.|+.||||||+.+.|+..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 58899999999999999999853
No 324
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.61 E-value=0.0011 Score=53.01 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5799999999999999999863
No 325
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.60 E-value=0.0013 Score=55.26 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
.+..+.|.||+|+|||||++.++....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 567889999999999999999998655
No 326
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.60 E-value=0.0016 Score=58.81 Aligned_cols=28 Identities=25% Similarity=0.266 Sum_probs=25.6
Q ss_pred EEcCCcEEEEEcCCCChHHHHHHHHhhC
Q 024032 94 DIPPVITILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 94 ~i~~Ge~~aivGpnGsGKSTLl~ll~gl 121 (273)
-+++|+++.|.||+|+|||||+..++..
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 5889999999999999999999988864
No 327
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=96.59 E-value=0.00084 Score=59.07 Aligned_cols=23 Identities=39% Similarity=0.652 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhCc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
.++|+|++|+|||||+|.|.+--
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999998753
No 328
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.59 E-value=0.0012 Score=57.71 Aligned_cols=27 Identities=33% Similarity=0.626 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
++.++.|.|++||||||+.+.|+..+.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 466899999999999999999987543
No 329
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.59 E-value=0.0011 Score=53.72 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=21.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhCcc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
.++|+|+.|+|||||++.+.|...
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 579999999999999999998654
No 330
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.59 E-value=0.0011 Score=59.68 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|++|+|||||+|.|.|-
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999985
No 331
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.58 E-value=0.0012 Score=53.10 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 5799999999999999999863
No 332
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.58 E-value=0.0012 Score=52.95 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5799999999999999999874
No 333
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.58 E-value=0.0012 Score=52.66 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5799999999999999999874
No 334
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.57 E-value=0.0012 Score=53.72 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++++|+.|+|||||++.+.+-
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5799999999999999999874
No 335
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.55 E-value=0.001 Score=54.45 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.3
Q ss_pred cEEEEEcCCCChHHHHHHHHhhC
Q 024032 99 ITILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 99 e~~aivGpnGsGKSTLl~ll~gl 121 (273)
.+++|+|++||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999763
No 336
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.54 E-value=0.0013 Score=55.00 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHhhCc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
.++|+|++|+|||||++.+.+-.
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 67999999999999999998743
No 337
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.54 E-value=0.0013 Score=52.72 Aligned_cols=22 Identities=41% Similarity=0.522 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5799999999999999999874
No 338
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.54 E-value=0.0012 Score=54.28 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5799999999999999999864
No 339
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.53 E-value=0.0014 Score=56.70 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=21.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhh
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~g 120 (273)
++-+++|.||+||||||+.+.|+.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 445789999999999999999974
No 340
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.53 E-value=0.0011 Score=61.56 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|||++|+|||||++.|++.
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3699999999999999999985
No 341
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.53 E-value=0.0014 Score=54.07 Aligned_cols=22 Identities=36% Similarity=0.617 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5799999999999999999875
No 342
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.52 E-value=0.0015 Score=54.18 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=21.9
Q ss_pred cEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 99 ITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 99 e~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
..+.|.||+|+|||||++.|+....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999998654
No 343
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.52 E-value=0.0014 Score=59.94 Aligned_cols=28 Identities=18% Similarity=0.208 Sum_probs=25.7
Q ss_pred EEcCCcEEEEEcCCCChHHHHHHHHhhC
Q 024032 94 DIPPVITILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 94 ~i~~Ge~~aivGpnGsGKSTLl~ll~gl 121 (273)
-+++|+++.|.||+|+|||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999999988874
No 344
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.52 E-value=0.0013 Score=59.21 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
+++|+|+.|+|||||+|.|.|-
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 8999999999999999999984
No 345
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.52 E-value=0.0013 Score=53.12 Aligned_cols=22 Identities=32% Similarity=0.591 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5799999999999999999864
No 346
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.52 E-value=0.0013 Score=57.07 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHHHHHhhCc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
.++|+|++|+|||||++.|.|-.
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999853
No 347
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.52 E-value=0.0012 Score=53.93 Aligned_cols=21 Identities=38% Similarity=0.563 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhh
Q 024032 100 TILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~g 120 (273)
.++|+|+.|+|||||++.+.+
T Consensus 10 ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHc
Confidence 579999999999999999987
No 348
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.52 E-value=0.00092 Score=64.00 Aligned_cols=37 Identities=22% Similarity=0.205 Sum_probs=30.9
Q ss_pred eEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEE
Q 024032 93 MDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVL 129 (273)
Q Consensus 93 ~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~ 129 (273)
+.+-+|+..+|+||+|+|||||++.|++-.. ..+.|.
T Consensus 146 ~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~ 183 (473)
T 1sky_E 146 APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGIS 183 (473)
T ss_dssp SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCE
T ss_pred hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcEE
Confidence 6678999999999999999999999988665 444443
No 349
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.51 E-value=0.0013 Score=57.73 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|||||||++.+.|.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5799999999999999999986
No 350
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.51 E-value=0.0013 Score=57.04 Aligned_cols=23 Identities=30% Similarity=0.325 Sum_probs=20.8
Q ss_pred cEEEEEcCCCChHHHHHHHHhhC
Q 024032 99 ITILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 99 e~~aivGpnGsGKSTLl~ll~gl 121 (273)
-+++|.|++||||||+.+.|+..
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999764
No 351
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=96.50 E-value=0.00081 Score=56.32 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=21.0
Q ss_pred EEEEEcCCCChHHHHHHHHhhCc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
.++|+|+.|+|||||++.|.|-.
T Consensus 31 ~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCS
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998853
No 352
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.49 E-value=0.0013 Score=53.59 Aligned_cols=22 Identities=32% Similarity=0.391 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5799999999999999999874
No 353
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.48 E-value=0.0015 Score=52.72 Aligned_cols=22 Identities=27% Similarity=0.517 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5799999999999999999864
No 354
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.48 E-value=0.0012 Score=59.47 Aligned_cols=28 Identities=29% Similarity=0.571 Sum_probs=24.7
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
..+..+.|.||+|+|||||++.+++...
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3466889999999999999999998765
No 355
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.48 E-value=0.0014 Score=53.28 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|++|+|||||++.+.+-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999874
No 356
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.48 E-value=0.0011 Score=55.06 Aligned_cols=22 Identities=36% Similarity=0.585 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|++|+|||||++.+.|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6799999999999999999764
No 357
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.47 E-value=0.0015 Score=53.19 Aligned_cols=22 Identities=41% Similarity=0.501 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5799999999999999999874
No 358
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.47 E-value=0.0015 Score=52.99 Aligned_cols=24 Identities=17% Similarity=0.535 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCChHHHHHHHHhhC
Q 024032 98 VITILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 98 Ge~~aivGpnGsGKSTLl~ll~gl 121 (273)
.-.++|+|+.|+|||||++.+.+-
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 347899999999999999999863
No 359
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.47 E-value=0.0014 Score=54.86 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHhhCc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
.++|+|+.|+|||||++.|++-.
T Consensus 32 ~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 32 AVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 67999999999999999998753
No 360
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.46 E-value=0.0015 Score=53.56 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5799999999999999999874
No 361
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.44 E-value=0.0016 Score=54.81 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=20.6
Q ss_pred cEEEEEcCCCChHHHHHHHHhhC
Q 024032 99 ITILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 99 e~~aivGpnGsGKSTLl~ll~gl 121 (273)
-+++|.|+.||||||+.+.|+..
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 37899999999999999999853
No 362
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.44 E-value=0.0016 Score=53.78 Aligned_cols=22 Identities=41% Similarity=0.714 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|||++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999863
No 363
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.44 E-value=0.0017 Score=52.29 Aligned_cols=21 Identities=19% Similarity=0.286 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHHhh
Q 024032 100 TILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~g 120 (273)
.++|+|+.|+|||||++.+.+
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 579999999999999999985
No 364
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.44 E-value=0.0016 Score=55.51 Aligned_cols=22 Identities=41% Similarity=0.581 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
+++|.|++||||||+.+.|+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999753
No 365
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.42 E-value=0.0017 Score=52.36 Aligned_cols=21 Identities=33% Similarity=0.539 Sum_probs=19.3
Q ss_pred EEEEEcCCCChHHHHHHHHhh
Q 024032 100 TILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~g 120 (273)
.++|+|+.|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 579999999999999999984
No 366
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.41 E-value=0.0016 Score=53.78 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHhhCc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
.++|+|+.|+|||||++.+.+-.
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 67999999999999999998743
No 367
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.41 E-value=0.0018 Score=52.83 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5799999999999999999863
No 368
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.40 E-value=0.0016 Score=53.57 Aligned_cols=22 Identities=32% Similarity=0.391 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999874
No 369
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.39 E-value=0.0018 Score=54.85 Aligned_cols=25 Identities=24% Similarity=0.444 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhhC
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~gl 121 (273)
+|-++.|+|+.||||||+.+.|+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3557899999999999999999753
No 370
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=96.38 E-value=0.0016 Score=57.81 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHhhCc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
.++|+|+.|||||||++.|.|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999963
No 371
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.38 E-value=0.0018 Score=53.04 Aligned_cols=22 Identities=27% Similarity=0.372 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 5799999999999999999874
No 372
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=96.38 E-value=0.0017 Score=57.30 Aligned_cols=22 Identities=41% Similarity=0.524 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|..|||||||+|.+.|-
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999985
No 373
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.37 E-value=0.0019 Score=52.83 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5799999999999999999874
No 374
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=96.37 E-value=0.0018 Score=56.67 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|++|+|||||++.+.|-
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5799999999999999999985
No 375
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.37 E-value=0.0022 Score=51.44 Aligned_cols=22 Identities=23% Similarity=0.203 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6799999999999999999863
No 376
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=96.36 E-value=0.0018 Score=54.90 Aligned_cols=22 Identities=41% Similarity=0.607 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|++|+|||||++.+.+-
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999874
No 377
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.36 E-value=0.002 Score=56.78 Aligned_cols=26 Identities=31% Similarity=0.482 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhhCc
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
++..+.|.||+|+|||||++.+++..
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 45578999999999999999999753
No 378
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.36 E-value=0.0015 Score=53.61 Aligned_cols=22 Identities=27% Similarity=0.539 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999863
No 379
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.36 E-value=0.0018 Score=53.50 Aligned_cols=22 Identities=41% Similarity=0.526 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999874
No 380
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.35 E-value=0.0019 Score=52.53 Aligned_cols=21 Identities=14% Similarity=0.536 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhh
Q 024032 100 TILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~g 120 (273)
.++|+|+.|+|||||++.+.+
T Consensus 18 ~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 679999999999999999985
No 381
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.35 E-value=0.0075 Score=57.13 Aligned_cols=33 Identities=9% Similarity=0.050 Sum_probs=27.2
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhh
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~g 120 (273)
|+.+---+++|+++.|.|++|+|||||+--++.
T Consensus 187 LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 187 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 454443589999999999999999999877765
No 382
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.34 E-value=0.002 Score=52.31 Aligned_cols=22 Identities=45% Similarity=0.546 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5799999999999999999874
No 383
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.34 E-value=0.00094 Score=59.76 Aligned_cols=26 Identities=23% Similarity=0.328 Sum_probs=19.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhhCc
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
++-++||-||+||||||+.+.|...+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999998744
No 384
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.34 E-value=0.0019 Score=55.26 Aligned_cols=29 Identities=24% Similarity=0.268 Sum_probs=24.9
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhhCccC
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYSVLSR 124 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~gl~~~ 124 (273)
.+|.+++|-|+.||||||+++.|...+..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 46889999999999999999999876653
No 385
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.33 E-value=0.0014 Score=53.45 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHhhCc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
.++|+|+.|+|||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 67999999999999999998754
No 386
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.33 E-value=0.002 Score=52.69 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6799999999999999999874
No 387
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.33 E-value=0.002 Score=57.12 Aligned_cols=23 Identities=39% Similarity=0.547 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCChHHHHHHHHhh
Q 024032 98 VITILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 98 Ge~~aivGpnGsGKSTLl~ll~g 120 (273)
.-+++|.|++||||||+.+.|+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999984
No 388
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.33 E-value=0.0019 Score=53.49 Aligned_cols=22 Identities=45% Similarity=0.543 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6799999999999999999864
No 389
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.33 E-value=0.0019 Score=53.04 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6799999999999999999874
No 390
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=96.32 E-value=0.0018 Score=53.69 Aligned_cols=22 Identities=32% Similarity=0.588 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5799999999999999999863
No 391
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.32 E-value=0.0021 Score=52.53 Aligned_cols=22 Identities=36% Similarity=0.561 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5799999999999999999863
No 392
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.32 E-value=0.0018 Score=52.80 Aligned_cols=22 Identities=23% Similarity=0.597 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6799999999999999999874
No 393
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.32 E-value=0.002 Score=53.89 Aligned_cols=22 Identities=36% Similarity=0.548 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|++|+|||||++.+.+-
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5799999999999999988764
No 394
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.32 E-value=0.0019 Score=54.34 Aligned_cols=22 Identities=23% Similarity=0.449 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|.|+.||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999753
No 395
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.30 E-value=0.0022 Score=52.92 Aligned_cols=22 Identities=32% Similarity=0.391 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6799999999999999999874
No 396
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.30 E-value=0.0018 Score=52.50 Aligned_cols=22 Identities=14% Similarity=0.478 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6799999999999999999863
No 397
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.29 E-value=0.0026 Score=51.05 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
.+..+.|.||.|+|||||++.++..+.
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 345678999999999999999987543
No 398
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.28 E-value=0.0017 Score=52.11 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5799999999999999999873
No 399
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.27 E-value=0.0022 Score=53.31 Aligned_cols=22 Identities=18% Similarity=0.369 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999874
No 400
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.26 E-value=0.0018 Score=56.01 Aligned_cols=29 Identities=21% Similarity=0.338 Sum_probs=22.3
Q ss_pred EcCCcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 95 IPPVITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 95 i~~Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
..+|-+++|-|++||||||+.+.|...+.
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45799999999999999999999987654
No 401
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=96.24 E-value=0.0024 Score=53.08 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6799999999999999999864
No 402
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.23 E-value=0.0026 Score=52.11 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 6799999999999999988763
No 403
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.23 E-value=0.0023 Score=56.48 Aligned_cols=22 Identities=36% Similarity=0.514 Sum_probs=20.0
Q ss_pred cEEEEEcCCCChHHHHHHHHhh
Q 024032 99 ITILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 99 e~~aivGpnGsGKSTLl~ll~g 120 (273)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999985
No 404
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.23 E-value=0.0023 Score=53.50 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|++|+|||||++.+.+-
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999874
No 405
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=96.23 E-value=0.0025 Score=53.13 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5799999999999999999874
No 406
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=96.22 E-value=0.0024 Score=55.75 Aligned_cols=22 Identities=45% Similarity=0.638 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.|.|-
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5699999999999999999984
No 407
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.21 E-value=0.0029 Score=54.07 Aligned_cols=25 Identities=20% Similarity=0.313 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhhC
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~gl 121 (273)
.+..+.|+|+.||||||+.+.|+..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4458899999999999999999854
No 408
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=96.20 E-value=0.0026 Score=52.27 Aligned_cols=22 Identities=32% Similarity=0.338 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6799999999999999999863
No 409
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=96.20 E-value=0.0022 Score=56.36 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHhhCc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
.++|+|..|+|||||++.|.|..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999853
No 410
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=96.19 E-value=0.0025 Score=53.41 Aligned_cols=21 Identities=33% Similarity=0.613 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhh
Q 024032 100 TILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~g 120 (273)
.++|+|+.|+|||||++.+.+
T Consensus 36 ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 579999999999999999986
No 411
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=96.19 E-value=0.0024 Score=55.87 Aligned_cols=23 Identities=52% Similarity=0.609 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhCc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
.++++|++|+|||||++.|.|-.
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 56999999999999999999743
No 412
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=96.17 E-value=0.0026 Score=52.35 Aligned_cols=23 Identities=43% Similarity=0.745 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhCc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
.++|+|++|+|||||++.+.+-.
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 67999999999999999988743
No 413
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.17 E-value=0.0022 Score=53.92 Aligned_cols=24 Identities=33% Similarity=0.398 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCChHHHHHHHHhhC
Q 024032 98 VITILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 98 Ge~~aivGpnGsGKSTLl~ll~gl 121 (273)
+-+++|.|++||||||+.+.|+..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~ 26 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASE 26 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 347899999999999999999874
No 414
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.17 E-value=0.0028 Score=55.86 Aligned_cols=29 Identities=24% Similarity=0.496 Sum_probs=22.7
Q ss_pred cEEEEEcCCCChHHHHHHHHhhCcc-CccE
Q 024032 99 ITILLMGFSGSGKSSLVNLMYSVLS-RSGL 127 (273)
Q Consensus 99 e~~aivGpnGsGKSTLl~ll~gl~~-~~G~ 127 (273)
-.++++|.+|+|||||+|.|.|-.. ..|.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~ 129 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA 129 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCC
Confidence 5789999999999999999998654 4443
No 415
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.17 E-value=0.0032 Score=57.81 Aligned_cols=26 Identities=31% Similarity=0.393 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhhCc
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
++.++.|+||+|||||||...|+.-+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 45689999999999999999998643
No 416
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=96.16 E-value=0.0017 Score=52.38 Aligned_cols=21 Identities=33% Similarity=0.523 Sum_probs=9.2
Q ss_pred EEEEEcCCCChHHHHHHHHhh
Q 024032 100 TILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~g 120 (273)
.++|+|+.|+|||||++.+.+
T Consensus 10 ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 579999999999999999875
No 417
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.15 E-value=0.0026 Score=58.43 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=21.2
Q ss_pred cEEEEEcCCCChHHHHHHHHhhCc
Q 024032 99 ITILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 99 e~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
.+++|.||+|||||||.+.|+..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 378999999999999999998644
No 418
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=96.15 E-value=0.0027 Score=52.46 Aligned_cols=22 Identities=18% Similarity=0.384 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5799999999999999999874
No 419
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.14 E-value=0.0024 Score=57.18 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=21.9
Q ss_pred cEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 99 ITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 99 e~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
..+.|.||+|+|||||++.|++.+.
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~ 62 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAK 62 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHH
Confidence 3568999999999999999998655
No 420
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.14 E-value=0.0028 Score=53.28 Aligned_cols=23 Identities=35% Similarity=0.504 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHhhCc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
.++|+|+.|+|||||++.+++-.
T Consensus 40 ~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 40 AFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 67999999999999999988643
No 421
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.13 E-value=0.0028 Score=59.42 Aligned_cols=28 Identities=25% Similarity=0.482 Sum_probs=24.0
Q ss_pred eEEcCCcEEEEEcCCCChHHHHHHHHhh
Q 024032 93 MDIPPVITILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 93 ~~i~~Ge~~aivGpnGsGKSTLl~ll~g 120 (273)
+.-.+..++.|+|++||||||+.+.|+.
T Consensus 253 ~~~~~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 253 LLSPNPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCSSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred cCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3445678999999999999999999875
No 422
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.13 E-value=0.003 Score=54.96 Aligned_cols=28 Identities=25% Similarity=0.458 Sum_probs=24.6
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
.+|.+++|.|++||||||+++.|...+.
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3688999999999999999999987665
No 423
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.12 E-value=0.003 Score=51.59 Aligned_cols=22 Identities=18% Similarity=0.224 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999864
No 424
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=96.11 E-value=0.0026 Score=52.37 Aligned_cols=23 Identities=22% Similarity=0.528 Sum_probs=20.4
Q ss_pred CcEEEEEcCCCChHHHHHHHHhh
Q 024032 98 VITILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 98 Ge~~aivGpnGsGKSTLl~ll~g 120 (273)
.-.++|+|+.|+|||||++.+.+
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCS
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 34789999999999999999875
No 425
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.09 E-value=0.0034 Score=53.71 Aligned_cols=30 Identities=27% Similarity=0.482 Sum_probs=25.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhhCccCcc
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYSVLSRSG 126 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G 126 (273)
+|.+++|-|++||||||+++.|...+...|
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~ 31 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQLG 31 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 478999999999999999999998766333
No 426
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.05 E-value=0.0036 Score=57.03 Aligned_cols=25 Identities=16% Similarity=0.231 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCChHHHHHHHHhhCc
Q 024032 98 VITILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 98 Ge~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
+.+++|+||+|||||||...|+.-+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4578999999999999999998543
No 427
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.04 E-value=0.0047 Score=52.74 Aligned_cols=32 Identities=28% Similarity=0.281 Sum_probs=26.0
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhh
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~g 120 (273)
++..-+++ .|..+.|+||+|+|||||...|+.
T Consensus 25 lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 25 MHGVLVDI-YGLGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp EESEEEEE-TTEEEEEECCCTTTTHHHHHHHHT
T ss_pred eeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHH
Confidence 55555554 678899999999999999998875
No 428
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.04 E-value=0.0031 Score=54.21 Aligned_cols=30 Identities=20% Similarity=0.339 Sum_probs=24.8
Q ss_pred eeEEcCCcEEEEEcCCCChHHHHHHHHhhC
Q 024032 92 GMDIPPVITILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 92 s~~i~~Ge~~aivGpnGsGKSTLl~ll~gl 121 (273)
+-.+++..++.|+||.||||+|..+.|+--
T Consensus 23 ~~~~~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 23 DQKLAKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp -CCTTSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred chhccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 344567789999999999999999999854
No 429
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.03 E-value=0.0038 Score=53.62 Aligned_cols=32 Identities=25% Similarity=0.377 Sum_probs=26.7
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhhCccCccE
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYSVLSRSGL 127 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~ 127 (273)
.+|.+++|-|+.||||||+.+.|...+...+.
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~~~~ 34 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQPNCK 34 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCSSEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcccce
Confidence 46889999999999999999999876654333
No 430
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.03 E-value=0.0014 Score=62.07 Aligned_cols=42 Identities=24% Similarity=0.397 Sum_probs=31.3
Q ss_pred eEEcCC--cEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCee
Q 024032 93 MDIPPV--ITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTS 134 (273)
Q Consensus 93 ~~i~~G--e~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~ 134 (273)
|.+.++ .+++|+|++|+||||++..|++.+. ....+.+-.-+
T Consensus 92 ~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 92 LELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp CCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 444434 5999999999999999999999876 54456554333
No 431
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.03 E-value=0.0037 Score=53.61 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCChHHHHHHHHhhCc
Q 024032 98 VITILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 98 Ge~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
|.+++|-|+.||||||+.+.|+..+
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 5689999999999999999998654
No 432
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=96.03 E-value=0.0035 Score=53.19 Aligned_cols=22 Identities=41% Similarity=0.714 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|||++|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
No 433
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.02 E-value=0.0037 Score=54.61 Aligned_cols=26 Identities=35% Similarity=0.477 Sum_probs=22.1
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhhC
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++.-+.|.||+|+|||||++.++..
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 34556889999999999999999874
No 434
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.02 E-value=0.0026 Score=60.20 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|++|+|||||+|.|.|-
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 7899999999999999999873
No 435
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=95.97 E-value=0.0016 Score=54.39 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999998853
No 436
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.97 E-value=0.0038 Score=51.74 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 5799999999999999999864
No 437
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=95.96 E-value=0.0037 Score=52.65 Aligned_cols=22 Identities=41% Similarity=0.566 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5799999999999999999874
No 438
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.95 E-value=0.0045 Score=53.46 Aligned_cols=28 Identities=36% Similarity=0.551 Sum_probs=24.9
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
.+|.+++|-|++||||||+.+.|...+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4688999999999999999999987654
No 439
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.95 E-value=0.0034 Score=50.35 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 98 VITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 98 Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
+..+.|.||.|+|||||++.++..+.
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHH
Confidence 44668999999999999999987543
No 440
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.94 E-value=0.0041 Score=51.57 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=21.6
Q ss_pred EEEEEcCCCChHHHHHHHHhhCcc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
.+.|.||+|+|||||++.++..+.
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 789999999999999999987654
No 441
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=95.92 E-value=0.004 Score=51.71 Aligned_cols=21 Identities=19% Similarity=0.286 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHHhh
Q 024032 100 TILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~g 120 (273)
.++|+|+.|+|||||++.+.+
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 679999999999999999875
No 442
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.91 E-value=0.0045 Score=55.60 Aligned_cols=27 Identities=19% Similarity=0.282 Sum_probs=24.7
Q ss_pred EEcCCcEEEEEcCCCChHHHHHHHHhh
Q 024032 94 DIPPVITILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 94 ~i~~Ge~~aivGpnGsGKSTLl~ll~g 120 (273)
-+++|+++.|.||+|+|||||...++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999988775
No 443
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=95.91 E-value=0.0025 Score=51.84 Aligned_cols=22 Identities=27% Similarity=0.608 Sum_probs=19.7
Q ss_pred cEEEEEcCCCChHHHHHHHHhh
Q 024032 99 ITILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 99 e~~aivGpnGsGKSTLl~ll~g 120 (273)
=.++|+|+.|+|||||++.+.+
T Consensus 23 ~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3689999999999999999864
No 444
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.91 E-value=0.004 Score=56.80 Aligned_cols=24 Identities=33% Similarity=0.499 Sum_probs=21.1
Q ss_pred cEEEEEcCCCChHHHHHHHHhhCc
Q 024032 99 ITILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 99 e~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
.++.|+||+|||||||.+.|+..+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 378999999999999999998643
No 445
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.91 E-value=0.0013 Score=66.93 Aligned_cols=43 Identities=16% Similarity=0.301 Sum_probs=33.8
Q ss_pred eeEEcCCcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeC
Q 024032 92 GMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSS 135 (273)
Q Consensus 92 s~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i 135 (273)
++.+.++..+.|+||+|+|||||.++|++.+. .+.+.+++.++
T Consensus 505 ~~~~~~~~~vLL~GppGtGKT~Lakala~~~~-~~~i~v~~~~l 547 (806)
T 1ypw_A 505 KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ-ANFISIKGPEL 547 (806)
T ss_dssp CCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT-CCCCCCCCSSS
T ss_pred hcCCCCCceeEEECCCCCCHHHHHHHHHHHhC-CCEEEEechHh
Confidence 56778999999999999999999999998764 23444555443
No 446
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=95.89 E-value=0.0017 Score=53.35 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=4.3
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6799999999999999998864
No 447
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.88 E-value=0.0029 Score=55.12 Aligned_cols=27 Identities=26% Similarity=0.409 Sum_probs=23.3
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhhCc
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
+++-+++|.|+.||||||+.+.|+..+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 567799999999999999999988654
No 448
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.87 E-value=0.0047 Score=58.66 Aligned_cols=34 Identities=26% Similarity=0.357 Sum_probs=27.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEE
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLF 130 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i 130 (273)
++.+++++|++|+||||++..|+..+. ..-.+.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVll 133 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGV 133 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 467999999999999999999998776 4334544
No 449
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=95.82 E-value=0.0049 Score=51.73 Aligned_cols=22 Identities=18% Similarity=0.422 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6799999999999999999864
No 450
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.82 E-value=0.0054 Score=52.60 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=20.7
Q ss_pred cEEEEEcCCCChHHHHHHHHhhCc
Q 024032 99 ITILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 99 e~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
.-+.|.||+|+|||||++.++..+
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 356899999999999999998743
No 451
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=95.82 E-value=0.0047 Score=51.19 Aligned_cols=22 Identities=18% Similarity=0.194 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999863
No 452
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.82 E-value=0.0057 Score=56.38 Aligned_cols=38 Identities=16% Similarity=0.212 Sum_probs=29.4
Q ss_pred EcCCcEEEEEcCCCChHHHHHHHHhhCcc-C-ccEEEECC
Q 024032 95 IPPVITILLMGFSGSGKSSLVNLMYSVLS-R-SGLVLFAQ 132 (273)
Q Consensus 95 i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~-~G~I~i~g 132 (273)
+++|+++.|.||+|+|||||...++.-.. . ...++++.
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 88999999999999999999988876544 3 23444544
No 453
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.79 E-value=0.0014 Score=56.87 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=19.6
Q ss_pred EEEEcCCCChHHHHHHHHhhCc
Q 024032 101 ILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 101 ~aivGpnGsGKSTLl~ll~gl~ 122 (273)
+.|.||+|+|||||++.|+...
T Consensus 47 vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 6788999999999999999743
No 454
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.74 E-value=0.0018 Score=58.12 Aligned_cols=36 Identities=19% Similarity=0.244 Sum_probs=27.5
Q ss_pred eeeeeeEEcCC--cEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 88 IQKGGMDIPPV--ITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 88 L~~is~~i~~G--e~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
++.+.-.+..| ..+.|.||+|+|||||++.+++.+.
T Consensus 46 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 46 VTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp HHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 44444445555 3489999999999999999998754
No 455
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.72 E-value=0.0061 Score=55.38 Aligned_cols=24 Identities=33% Similarity=0.461 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHhhC
Q 024032 98 VITILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 98 Ge~~aivGpnGsGKSTLl~ll~gl 121 (273)
..+++|+||+|||||||...|+.-
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHHh
Confidence 347899999999999999999854
No 456
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.66 E-value=0.0083 Score=49.83 Aligned_cols=25 Identities=16% Similarity=0.101 Sum_probs=20.5
Q ss_pred CCcEEEEEcCCCChHHHHH-HHHhhC
Q 024032 97 PVITILLMGFSGSGKSSLV-NLMYSV 121 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl-~ll~gl 121 (273)
+|.++.+.||.||||||++ +++..+
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4789999999999999997 555443
No 457
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=95.65 E-value=0.0066 Score=53.99 Aligned_cols=26 Identities=31% Similarity=0.465 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 98 VITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 98 Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
+-.++|+|.+|+|||||+|.|.|-..
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~ 145 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNI 145 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CceEEEEecCCCchHHHHHHHhcCce
Confidence 34789999999999999999998653
No 458
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.61 E-value=0.008 Score=50.87 Aligned_cols=24 Identities=33% Similarity=0.595 Sum_probs=21.8
Q ss_pred EcCCcEEEEEcCCCChHHHHHHHH
Q 024032 95 IPPVITILLMGFSGSGKSSLVNLM 118 (273)
Q Consensus 95 i~~Ge~~aivGpnGsGKSTLl~ll 118 (273)
+++|+++.|.|++|+|||||.--+
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~ 50 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQF 50 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHH
Confidence 789999999999999999997544
No 459
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.60 E-value=0.0066 Score=51.55 Aligned_cols=23 Identities=17% Similarity=0.367 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhhCc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
++.|+||.||||+|..+.|+.-+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998543
No 460
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.55 E-value=0.011 Score=49.41 Aligned_cols=32 Identities=19% Similarity=0.167 Sum_probs=24.4
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhh
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~g 120 (273)
++..-++ -.|.-+.|.|+||+|||||...+..
T Consensus 7 lHas~v~-v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 7 WHANFLV-IDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EESEEEE-ETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEE-ECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 4443333 4678899999999999999887753
No 461
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=95.49 E-value=0.0059 Score=57.42 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|||++|+|||||+|.|.|-
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999874
No 462
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.48 E-value=0.0087 Score=54.74 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=22.3
Q ss_pred cEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 99 ITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 99 e~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
-+++|+|+.|+|||||++.|++.+.
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999987664
No 463
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.42 E-value=0.0081 Score=56.43 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=20.7
Q ss_pred cEEEEEcCCCChHHHHHHHHhhCc
Q 024032 99 ITILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 99 e~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
.+++|+||+|||||||.+.|+.-+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 378999999999999999988543
No 464
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=95.42 E-value=0.0076 Score=53.94 Aligned_cols=23 Identities=52% Similarity=0.784 Sum_probs=20.3
Q ss_pred cEEEEEcCCCChHHHHHHHHhhC
Q 024032 99 ITILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 99 e~~aivGpnGsGKSTLl~ll~gl 121 (273)
-.++|+|+.|+|||||++.+.+-
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999998764
No 465
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=95.42 E-value=0.0071 Score=55.81 Aligned_cols=27 Identities=19% Similarity=0.316 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
++..++++|++|+|||||+|.|.|...
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~~~ 187 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEEAT 187 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhhcc
Confidence 466899999999999999999998743
No 466
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=95.42 E-value=0.0056 Score=51.23 Aligned_cols=22 Identities=27% Similarity=0.563 Sum_probs=18.9
Q ss_pred EEEEEcCCCChHHHHHHH-HhhC
Q 024032 100 TILLMGFSGSGKSSLVNL-MYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~l-l~gl 121 (273)
.++|+|+.|+|||||++. +.|-
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 579999999999999998 5553
No 467
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=94.37 E-value=0.0027 Score=52.45 Aligned_cols=21 Identities=19% Similarity=0.286 Sum_probs=19.0
Q ss_pred EEEEEcCCCChHHHHHHHHhh
Q 024032 100 TILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~g 120 (273)
.++|+|+.|+|||||++.+.+
T Consensus 32 ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 679999999999999988874
No 468
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=95.36 E-value=0.0079 Score=56.18 Aligned_cols=22 Identities=27% Similarity=0.305 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|.+++|||||+|.|.|-
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~ 23 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLV 23 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4799999999999999999875
No 469
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.29 E-value=0.0073 Score=54.39 Aligned_cols=28 Identities=29% Similarity=0.515 Sum_probs=23.6
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
..+..+.|.||+|+|||||++.++....
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 3455789999999999999999998654
No 470
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.28 E-value=0.0093 Score=48.86 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=19.8
Q ss_pred EEEEcCCCChHHHHHHHHhhCc
Q 024032 101 ILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 101 ~aivGpnGsGKSTLl~ll~gl~ 122 (273)
+.|.||.|+|||||++.++..+
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999998754
No 471
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=95.28 E-value=0.011 Score=50.14 Aligned_cols=26 Identities=35% Similarity=0.506 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 98 VITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 98 Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
|.+++|=|+-||||||+++.|...+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 56889999999999999999987654
No 472
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=95.26 E-value=0.0063 Score=58.03 Aligned_cols=26 Identities=27% Similarity=0.350 Sum_probs=22.5
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhhC
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~gl 121 (273)
+.|-.++|+|+.|+|||||+|.|.|-
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 34556999999999999999999984
No 473
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.25 E-value=0.01 Score=46.90 Aligned_cols=27 Identities=19% Similarity=0.279 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
.+.-+.|.||+|+|||++.+.|.....
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~~ 49 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFGR 49 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSST
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhCC
Confidence 344578999999999999999987543
No 474
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=95.25 E-value=0.006 Score=55.68 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|..|+|||||++.|.|.
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~ 54 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGR 54 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTS
T ss_pred eEEEECCCCCCHHHHHHHHhCC
Confidence 6799999999999999999985
No 475
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=95.22 E-value=0.0079 Score=55.54 Aligned_cols=26 Identities=23% Similarity=0.388 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhhCc
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
++..++++|.+|+|||||+|.|.|-.
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~~ 184 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKEF 184 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHHH
T ss_pred ccceEEEecCCCCChhHHHHHHHhhh
Confidence 56789999999999999999999864
No 476
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.20 E-value=0.012 Score=51.88 Aligned_cols=27 Identities=26% Similarity=0.514 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
++..+.|.||+|+|||||.+.++..+.
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 344679999999999999999987654
No 477
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=95.11 E-value=0.01 Score=54.32 Aligned_cols=31 Identities=26% Similarity=0.440 Sum_probs=23.7
Q ss_pred eeeEEcCCcEEEEEcCCCChHHHHHHHHhhC
Q 024032 91 GGMDIPPVITILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 91 is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl 121 (273)
+.++++---.++|+|.++||||||++.|++-
T Consensus 151 ~~leLk~la~V~lvG~~nvGKSTLln~L~~~ 181 (342)
T 1lnz_A 151 IVLELKVLADVGLVGFPSVGKSTLLSVVSSA 181 (342)
T ss_dssp EEEEEECCCCEEEESSTTSSHHHHHHHSEEE
T ss_pred HhhhhhhcCeeeeeCCCCCCHHHHHHHHHcC
Confidence 3444444446899999999999999998763
No 478
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=95.07 E-value=0.0098 Score=57.88 Aligned_cols=22 Identities=23% Similarity=0.492 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|..|+|||||+|.|.|-
T Consensus 67 ~V~vvG~~n~GKSTLIN~Llg~ 88 (550)
T 2qpt_A 67 MVLVAGQYSTGKTSFIQYLLEQ 88 (550)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999984
No 479
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=95.07 E-value=0.0095 Score=58.60 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=21.7
Q ss_pred cEEEEEcCCCChHHHHHHHHhhCc
Q 024032 99 ITILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 99 e~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
-+++|+|+.|+|||||+|.|.|-.
T Consensus 39 ~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 39 VVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred cEEEEECCCCCCHHHHHHhHcCCC
Confidence 478999999999999999999853
No 480
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=95.06 E-value=0.002 Score=53.20 Aligned_cols=21 Identities=43% Similarity=0.570 Sum_probs=19.2
Q ss_pred EEEEEcCCCChHHHHHHHHhh
Q 024032 100 TILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~g 120 (273)
.++|+|+.|+|||||++.+.+
T Consensus 35 ki~vvG~~~~GKSsli~~l~~ 55 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFAD 55 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 579999999999999998876
No 481
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.95 E-value=0.016 Score=52.26 Aligned_cols=36 Identities=22% Similarity=0.327 Sum_probs=28.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECC
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQ 132 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g 132 (273)
+|..+.|.||.|+|||||++.++..+. ....+.+.+
T Consensus 69 ~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~ 105 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAG 105 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccc
Confidence 456899999999999999999998766 444444443
No 482
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.92 E-value=0.016 Score=53.53 Aligned_cols=29 Identities=21% Similarity=0.232 Sum_probs=24.9
Q ss_pred EEcCCcEEEEEcCCCChHHHHHHHHhhCc
Q 024032 94 DIPPVITILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 94 ~i~~Ge~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
-+++|+++.|.||+|+|||||...++.-.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~ 98 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQA 98 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHH
Confidence 47899999999999999999997776543
No 483
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.90 E-value=0.015 Score=50.48 Aligned_cols=22 Identities=27% Similarity=0.599 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.+||+||.||||||+.+.|+.-
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHH
Confidence 6799999999999999999753
No 484
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=94.77 E-value=0.015 Score=53.98 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHhhCc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
.++++|+.|+|||||++.|.|..
T Consensus 10 ~I~vvG~~~~GKSTLi~~L~~~~ 32 (403)
T 3sjy_A 10 NIGVVGHVDHGKTTLVQAITGIW 32 (403)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcc
Confidence 67999999999999999999854
No 485
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.74 E-value=0.017 Score=56.54 Aligned_cols=37 Identities=27% Similarity=0.485 Sum_probs=27.8
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhhCccCcc---EEEECC
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYSVLSRSG---LVLFAQ 132 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G---~I~i~g 132 (273)
++|-++.|.|++||||||+.+.|...+...| .+.+++
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~ 433 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLG 433 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECc
Confidence 3466899999999999999999987655333 344444
No 486
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=94.74 E-value=0.017 Score=51.22 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=20.4
Q ss_pred cEEEEEcCCCChHHHHHHHHhhCc
Q 024032 99 ITILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 99 e~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
..+.|.||.|+|||+|.+.|+..+
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 356778999999999999999753
No 487
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=94.74 E-value=0.016 Score=50.69 Aligned_cols=24 Identities=25% Similarity=0.493 Sum_probs=20.9
Q ss_pred cEEEEEcCCCChHHHHHHHHhhCc
Q 024032 99 ITILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 99 e~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
.-+.|.||+|+|||||++.++..+
T Consensus 51 ~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999754
No 488
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.74 E-value=0.018 Score=51.68 Aligned_cols=26 Identities=38% Similarity=0.360 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 98 VITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 98 Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
+.-+.|.||+|+|||+|+++|+....
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999987543
No 489
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.74 E-value=0.014 Score=53.17 Aligned_cols=25 Identities=40% Similarity=0.583 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCChHHHHHHHHhhCc
Q 024032 98 VITILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 98 Ge~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
+..+.|.||+|+||||+.++|+..+
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3457899999999999999999754
No 490
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.74 E-value=0.016 Score=50.43 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.+.|.||+|+|||||.+.++..
T Consensus 66 ~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 66 SVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 5688999999999999999874
No 491
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.73 E-value=0.017 Score=51.96 Aligned_cols=26 Identities=38% Similarity=0.488 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhhCc
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
+..-+.|.||.|+|||||.+.++...
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCccHHHHHHHHHHHc
Confidence 33467899999999999999999754
No 492
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.71 E-value=0.018 Score=51.98 Aligned_cols=26 Identities=19% Similarity=0.574 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 98 VITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 98 Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
+..+.|.||.|+|||||++.++..+.
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~~ 70 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEIE 70 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 34789999999999999999997653
No 493
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.70 E-value=0.15 Score=44.28 Aligned_cols=34 Identities=6% Similarity=-0.032 Sum_probs=26.1
Q ss_pred CCCCEEEEcCcCCCCCHHHHHHHHHhcCCcEEEEc
Q 024032 195 RSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVS 229 (273)
Q Consensus 195 ~~p~iLlLDEPts~LD~~~~l~~l~~~~g~tiiiv 229 (273)
.+.+++++||.--..|..+.++.+.. .|+.||+.
T Consensus 89 ~~~dvViIDEaQF~~~v~el~~~l~~-~gi~VI~~ 122 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPDIVEFCEAMAN-AGKTVIVA 122 (234)
T ss_dssp TTCSEEEESSGGGCTTHHHHHHHHHH-TTCEEEEE
T ss_pred ccCCEEEEEchhhhhhHHHHHHHHHh-CCCEEEEE
Confidence 46799999998777775566666655 48999888
No 494
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=94.68 E-value=0.017 Score=57.78 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=23.2
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhhCc
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
+++=.++|+|+.|+|||||+|.|.|--
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~ 93 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGEN 93 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345578999999999999999999853
No 495
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=94.67 E-value=0.017 Score=54.32 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|||.+++|||||+|.+.|-
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~ 24 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKK 24 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999874
No 496
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=94.65 E-value=0.017 Score=54.20 Aligned_cols=23 Identities=43% Similarity=0.485 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHhhCc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
.++|+|.+|+|||||++.+.|-.
T Consensus 177 ki~lvG~~nvGKSSLin~l~~~~ 199 (436)
T 2hjg_A 177 QFCLIGRPNVGKSSLVNAMLGEE 199 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999853
No 497
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=94.63 E-value=0.018 Score=56.94 Aligned_cols=37 Identities=24% Similarity=0.316 Sum_probs=27.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhhCccCcc--EEEECCe
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYSVLSRSG--LVLFAQT 133 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G--~I~i~g~ 133 (273)
+|.++.|.|.+||||||+.+.|+..+...| .+.+++.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD 89 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD 89 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechH
Confidence 567899999999999999999987653222 4445543
No 498
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.61 E-value=0.016 Score=55.89 Aligned_cols=28 Identities=14% Similarity=0.068 Sum_probs=25.2
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
+.|-++.|+|.+||||||+-++|+..+.
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 5778999999999999999999998765
No 499
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=94.52 E-value=0.022 Score=51.94 Aligned_cols=26 Identities=35% Similarity=0.448 Sum_probs=22.5
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhhC
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~gl 121 (273)
.+..-+.|.||+|+|||||++.|+..
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34567899999999999999999864
No 500
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=94.50 E-value=0.02 Score=52.30 Aligned_cols=27 Identities=22% Similarity=0.256 Sum_probs=24.2
Q ss_pred EEcCCcEEEEEcCCCChHHHHHHHHhh
Q 024032 94 DIPPVITILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 94 ~i~~Ge~~aivGpnGsGKSTLl~ll~g 120 (273)
-+++|.++.|.||.|+|||||...++.
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 577888899999999999999999874
Done!