BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024033
(273 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DNP|A Chain A, Crystal Structure Of Dad2
Length = 269
Score = 226 bits (577), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 109/266 (40%), Positives = 167/266 (62%), Gaps = 4/266 (1%)
Query: 6 QGLSAAMNAKIIGSGKETLVLAHGFGGDQSIWDKITPVLSQHYRVLAFDWLFSGAILNKD 65
Q L A+N +++GSG+ LVLAHGFG DQS W++I P + YRV+ +D + +G++ N D
Sbjct: 5 QTLLDALNVRVVGSGERVLVLAHGFGTDQSAWNRILPFFLRDYRVVLYDLVCAGSV-NPD 63
Query: 66 HQSLYNPVKYSSYEAFADDLITLLEENDLKSTLFIGHSMSGMIGCIASVKKPELFKRLIL 125
++ +Y++ + + DDL+ +L+ + ++GHS+S MIG +AS+++PELF +LIL
Sbjct: 64 ---FFDFRRYTTLDPYVDDLLHILDALGIDCCAYVGHSVSAMIGILASIRRPELFSKLIL 120
Query: 126 IGTSPRYINTDDYEGGFEPSDIENLISNVETNYASWASSFPRLVVDTKDAPSVEKFENCL 185
IG SPR++N +DY GGFE +IE + S +E NY +W + F L V +V +F L
Sbjct: 121 IGASPRFLNDEDYHGGFEQGEIEKVFSAMEANYEAWVNGFAPLAVGADVPAAVREFSRTL 180
Query: 186 KRMRHEFALPLAKTVFYSDEREILDKVETPCTIFQPSNDAVVPNSVAYYMQEKMKGKSTV 245
MR + L +++TVF SD R +L V+ PC IFQ + D VP SVA Y++ + GK+TV
Sbjct: 181 FNMRPDITLFVSRTVFNSDMRGVLGLVKVPCHIFQTARDHSVPASVATYLKNHLGGKNTV 240
Query: 246 EIIEADGHFPQLTAHLQLIDVLNKVL 271
+ +GH P L+A L L + L
Sbjct: 241 HWLNIEGHLPHLSAPTLLAQELRRAL 266
>pdb|4DNQ|A Chain A, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|B Chain B, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|C Chain C, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|D Chain D, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|E Chain E, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|F Chain F, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|G Chain G, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|H Chain H, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|I Chain I, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|J Chain J, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|K Chain K, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|L Chain L, Crystal Structure Of Dad2 S96a Mutant
Length = 269
Score = 225 bits (574), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 108/266 (40%), Positives = 167/266 (62%), Gaps = 4/266 (1%)
Query: 6 QGLSAAMNAKIIGSGKETLVLAHGFGGDQSIWDKITPVLSQHYRVLAFDWLFSGAILNKD 65
Q L A+N +++GSG+ LVLAHGFG DQS W++I P + YRV+ +D + +G++ N D
Sbjct: 5 QTLLDALNVRVVGSGERVLVLAHGFGTDQSAWNRILPFFLRDYRVVLYDLVCAGSV-NPD 63
Query: 66 HQSLYNPVKYSSYEAFADDLITLLEENDLKSTLFIGHSMSGMIGCIASVKKPELFKRLIL 125
++ +Y++ + + DDL+ +L+ + ++GH++S MIG +AS+++PELF +LIL
Sbjct: 64 ---FFDFRRYTTLDPYVDDLLHILDALGIDCCAYVGHAVSAMIGILASIRRPELFSKLIL 120
Query: 126 IGTSPRYINTDDYEGGFEPSDIENLISNVETNYASWASSFPRLVVDTKDAPSVEKFENCL 185
IG SPR++N +DY GGFE +IE + S +E NY +W + F L V +V +F L
Sbjct: 121 IGASPRFLNDEDYHGGFEQGEIEKVFSAMEANYEAWVNGFAPLAVGADVPAAVREFSRTL 180
Query: 186 KRMRHEFALPLAKTVFYSDEREILDKVETPCTIFQPSNDAVVPNSVAYYMQEKMKGKSTV 245
MR + L +++TVF SD R +L V+ PC IFQ + D VP SVA Y++ + GK+TV
Sbjct: 181 FNMRPDITLFVSRTVFNSDMRGVLGLVKVPCHIFQTARDHSVPASVATYLKNHLGGKNTV 240
Query: 246 EIIEADGHFPQLTAHLQLIDVLNKVL 271
+ +GH P L+A L L + L
Sbjct: 241 HWLNIEGHLPHLSAPTLLAQELRRAL 266
>pdb|4IHA|A Chain A, Crystal Structure Of Rice Dwarf14 (d14) In Complex With A
Gr24 Hydrolysis Intermediate
pdb|4IHA|B Chain B, Crystal Structure Of Rice Dwarf14 (d14) In Complex With A
Gr24 Hydrolysis Intermediate
pdb|4IH9|A Chain A, Crystal Structure Of Rice Dwarf14 (d14)
pdb|4IH9|B Chain B, Crystal Structure Of Rice Dwarf14 (d14)
Length = 268
Score = 224 bits (572), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 99/261 (37%), Positives = 167/261 (63%), Gaps = 4/261 (1%)
Query: 12 MNAKIIGSGKETLVLAHGFGGDQSIWDKITPVLSQHYRVLAFDWLFSGAILNKDHQSLYN 71
+N +++GSG+ +VL+HGFG DQS W ++ P L++ +RV+ +D + +G++ N DH ++
Sbjct: 10 LNVRVVGSGERVVVLSHGFGTDQSAWSRVLPYLTRDHRVVLYDLVCAGSV-NPDH---FD 65
Query: 72 PVKYSSYEAFADDLITLLEENDLKSTLFIGHSMSGMIGCIASVKKPELFKRLILIGTSPR 131
+Y + +A+ DDL+ +L+ + F+GHS+S MIG +AS+++P+LF +L+LIG SPR
Sbjct: 66 FRRYDNLDAYVDDLLAILDALRIPRCAFVGHSVSAMIGILASIRRPDLFAKLVLIGASPR 125
Query: 132 YINTDDYEGGFEPSDIENLISNVETNYASWASSFPRLVVDTKDAPSVEKFENCLKRMRHE 191
++N DY GGFE +I+ + + NY++WA+ + L V +V++F L MR +
Sbjct: 126 FLNDSDYHGGFELEEIQQVFDAMGANYSAWATGYAPLAVGADVPAAVQEFSRTLFNMRPD 185
Query: 192 FALPLAKTVFYSDEREILDKVETPCTIFQPSNDAVVPNSVAYYMQEKMKGKSTVEIIEAD 251
+L + +TVF +D R +L V PC + Q + D VP SVA Y++ + G++TVE ++ +
Sbjct: 186 ISLHVCQTVFKTDLRGVLGMVRAPCVVVQTTRDVSVPASVAAYLKAHLGGRTTVEFLQTE 245
Query: 252 GHFPQLTAHLQLIDVLNKVLG 272
GH P L+A L VL + L
Sbjct: 246 GHLPHLSAPSLLAQVLRRALA 266
>pdb|3W04|A Chain A, Crystal Structure Of Oryza Sativa Dwarf14 (d14)
pdb|3W04|B Chain B, Crystal Structure Of Oryza Sativa Dwarf14 (d14)
pdb|3W05|A Chain A, Crystal Structure Of Oryza Sativa Dwarf14 (d14) In Complex
With Pmsf
pdb|3W05|B Chain B, Crystal Structure Of Oryza Sativa Dwarf14 (d14) In Complex
With Pmsf
Length = 266
Score = 224 bits (572), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 99/261 (37%), Positives = 167/261 (63%), Gaps = 4/261 (1%)
Query: 12 MNAKIIGSGKETLVLAHGFGGDQSIWDKITPVLSQHYRVLAFDWLFSGAILNKDHQSLYN 71
+N +++GSG+ +VL+HGFG DQS W ++ P L++ +RV+ +D + +G++ N DH ++
Sbjct: 8 LNVRVVGSGERVVVLSHGFGTDQSAWSRVLPYLTRDHRVVLYDLVCAGSV-NPDH---FD 63
Query: 72 PVKYSSYEAFADDLITLLEENDLKSTLFIGHSMSGMIGCIASVKKPELFKRLILIGTSPR 131
+Y + +A+ DDL+ +L+ + F+GHS+S MIG +AS+++P+LF +L+LIG SPR
Sbjct: 64 FRRYDNLDAYVDDLLAILDALRIPRCAFVGHSVSAMIGILASIRRPDLFAKLVLIGASPR 123
Query: 132 YINTDDYEGGFEPSDIENLISNVETNYASWASSFPRLVVDTKDAPSVEKFENCLKRMRHE 191
++N DY GGFE +I+ + + NY++WA+ + L V +V++F L MR +
Sbjct: 124 FLNDSDYHGGFELEEIQQVFDAMGANYSAWATGYAPLAVGADVPAAVQEFSRTLFNMRPD 183
Query: 192 FALPLAKTVFYSDEREILDKVETPCTIFQPSNDAVVPNSVAYYMQEKMKGKSTVEIIEAD 251
+L + +TVF +D R +L V PC + Q + D VP SVA Y++ + G++TVE ++ +
Sbjct: 184 ISLHVCQTVFKTDLRGVLGMVRAPCVVVQTTRDVSVPASVAAYLKAHLGGRTTVEFLQTE 243
Query: 252 GHFPQLTAHLQLIDVLNKVLG 272
GH P L+A L VL + L
Sbjct: 244 GHLPHLSAPSLLAQVLRRALA 264
>pdb|4IH4|A Chain A, Crystal Structure Of Arabidopsis Dwarf14 Orthologue, Atd14
pdb|4IH4|B Chain B, Crystal Structure Of Arabidopsis Dwarf14 Orthologue, Atd14
pdb|4IH4|C Chain C, Crystal Structure Of Arabidopsis Dwarf14 Orthologue, Atd14
pdb|4IH4|D Chain D, Crystal Structure Of Arabidopsis Dwarf14 Orthologue, Atd14
Length = 267
Score = 224 bits (570), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 105/261 (40%), Positives = 166/261 (63%), Gaps = 4/261 (1%)
Query: 11 AMNAKIIGSGKETLVLAHGFGGDQSIWDKITPVLSQHYRVLAFDWLFSGAILNKDHQSLY 70
A+N +++G+G L LAHGFG DQS W I P +Q+YRV+ +D + +G++ N D+ +
Sbjct: 9 ALNVRVVGTGDRILFLAHGFGTDQSAWHLILPYFTQNYRVVLYDLVCAGSV-NPDY---F 64
Query: 71 NPVKYSSYEAFADDLITLLEENDLKSTLFIGHSMSGMIGCIASVKKPELFKRLILIGTSP 130
+ +Y++ + + DDL+ +++ +++ ++GHS+S MIG IAS+++PELF +LILIG SP
Sbjct: 65 DFNRYTTLDPYVDDLLNIVDSLGIQNCAYVGHSVSAMIGIIASIRRPELFSKLILIGFSP 124
Query: 131 RYINTDDYEGGFEPSDIENLISNVETNYASWASSFPRLVVDTKDAPSVEKFENCLKRMRH 190
R++N +DY GGFE +IE + S +E NY +W F L V +V +F L MR
Sbjct: 125 RFLNDEDYHGGFEEGEIEKVFSAMEANYEAWVHGFAPLAVGADVPAAVREFSRTLFNMRP 184
Query: 191 EFALPLAKTVFYSDEREILDKVETPCTIFQPSNDAVVPNSVAYYMQEKMKGKSTVEIIEA 250
+ +L +++TVF SD R +L V P + Q + D VP SVA Y++ + G +TVE ++
Sbjct: 185 DISLFVSRTVFNSDLRGVLGLVRVPTCVIQTAKDVSVPASVAEYLRSHLGGDTTVETLKT 244
Query: 251 DGHFPQLTAHLQLIDVLNKVL 271
+GH PQL+A QL L + L
Sbjct: 245 EGHLPQLSAPAQLAQFLRRAL 265
>pdb|4IH1|A Chain A, Crystal Structure Of Karrikin Insensitive 2 (kai2) From
Arabidopsis Thaliana
Length = 270
Score = 215 bits (548), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 106/258 (41%), Positives = 162/258 (62%), Gaps = 5/258 (1%)
Query: 11 AMNAKIIGSGKETLVLAHGFGGDQSIWDKITPVLSQHYRVLAFDWLFSGAILNKDHQSLY 70
A N K+IGSG+ T+VL HGFG DQS+W + P L YRV+ +D + +G N D+ +
Sbjct: 7 AHNVKVIGSGEATIVLGHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTT-NPDY---F 62
Query: 71 NPVKYSSYEAFADDLITLLEENDLKSTLFIGHSMSGMIGCIASVKKPELFKRLILIGTSP 130
+ +YS+ E ++ DLI +LE+ ++S +F+GHS+S MIG +AS+ +P+LF ++++I SP
Sbjct: 63 DFDRYSNLEGYSFDLIAILEDLKIESCIFVGHSVSAMIGVLASLNRPDLFSKIVMISASP 122
Query: 131 RYINTDDYEGGFEPSDIENLISNVETNYASWASSFPRLVVDTK-DAPSVEKFENCLKRMR 189
RY+N DY+GGFE D+ L + +NY +W F L V D+ +V++F L MR
Sbjct: 123 RYVNDVDYQGGFEQEDLNQLFEAIRSNYKAWCLGFAPLAVGGDMDSIAVQEFSRTLFNMR 182
Query: 190 HEFALPLAKTVFYSDEREILDKVETPCTIFQPSNDAVVPNSVAYYMQEKMKGKSTVEIIE 249
+ AL + +T+F SD R+IL V PC I Q D VP V+ Y+ + +S VE+I
Sbjct: 183 PDIALSVGQTIFQSDMRQILPFVTVPCHILQSVKDLAVPVVVSEYLHANLGCESVVEVIP 242
Query: 250 ADGHFPQLTAHLQLIDVL 267
+DGH PQL++ +I V+
Sbjct: 243 SDGHLPQLSSPDSVIPVI 260
>pdb|3W06|A Chain A, Crystal Structure Of Arabidopsis Thaliana Dwarf14 Like
(atd14l)
Length = 272
Score = 215 bits (548), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 106/258 (41%), Positives = 162/258 (62%), Gaps = 5/258 (1%)
Query: 11 AMNAKIIGSGKETLVLAHGFGGDQSIWDKITPVLSQHYRVLAFDWLFSGAILNKDHQSLY 70
A N K+IGSG+ T+VL HGFG DQS+W + P L YRV+ +D + +G N D+ +
Sbjct: 9 AHNVKVIGSGEATIVLGHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTT-NPDY---F 64
Query: 71 NPVKYSSYEAFADDLITLLEENDLKSTLFIGHSMSGMIGCIASVKKPELFKRLILIGTSP 130
+ +YS+ E ++ DLI +LE+ ++S +F+GHS+S MIG +AS+ +P+LF ++++I SP
Sbjct: 65 DFDRYSNLEGYSFDLIAILEDLKIESCIFVGHSVSAMIGVLASLNRPDLFSKIVMISASP 124
Query: 131 RYINTDDYEGGFEPSDIENLISNVETNYASWASSFPRLVVDTK-DAPSVEKFENCLKRMR 189
RY+N DY+GGFE D+ L + +NY +W F L V D+ +V++F L MR
Sbjct: 125 RYVNDVDYQGGFEQEDLNQLFEAIRSNYKAWCLGFAPLAVGGDMDSIAVQEFSRTLFNMR 184
Query: 190 HEFALPLAKTVFYSDEREILDKVETPCTIFQPSNDAVVPNSVAYYMQEKMKGKSTVEIIE 249
+ AL + +T+F SD R+IL V PC I Q D VP V+ Y+ + +S VE+I
Sbjct: 185 PDIALSVGQTIFQSDMRQILPFVTVPCHILQSVKDLAVPVVVSEYLHANLGCESVVEVIP 244
Query: 250 ADGHFPQLTAHLQLIDVL 267
+DGH PQL++ +I V+
Sbjct: 245 SDGHLPQLSSPDSVIPVI 262
>pdb|4HRX|A Chain A, Crystal Structure Of Kai2
pdb|4HRY|A Chain A, The Structure Of Arabidopsis Thaliana Kai2
pdb|4HTA|A Chain A, The Structure Of The Karrikin Insensitive (kai2) Protein
In Arabidopsis Thaliana
Length = 288
Score = 215 bits (547), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 106/258 (41%), Positives = 162/258 (62%), Gaps = 5/258 (1%)
Query: 11 AMNAKIIGSGKETLVLAHGFGGDQSIWDKITPVLSQHYRVLAFDWLFSGAILNKDHQSLY 70
A N K+IGSG+ T+VL HGFG DQS+W + P L YRV+ +D + +G N D+ +
Sbjct: 25 AHNVKVIGSGEATIVLGHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTT-NPDY---F 80
Query: 71 NPVKYSSYEAFADDLITLLEENDLKSTLFIGHSMSGMIGCIASVKKPELFKRLILIGTSP 130
+ +YS+ E ++ DLI +LE+ ++S +F+GHS+S MIG +AS+ +P+LF ++++I SP
Sbjct: 81 DFDRYSNLEGYSFDLIAILEDLKIESCIFVGHSVSAMIGVLASLNRPDLFSKIVMISASP 140
Query: 131 RYINTDDYEGGFEPSDIENLISNVETNYASWASSFPRLVVDTK-DAPSVEKFENCLKRMR 189
RY+N DY+GGFE D+ L + +NY +W F L V D+ +V++F L MR
Sbjct: 141 RYVNDVDYQGGFEQEDLNQLFEAIRSNYKAWCLGFAPLAVGGDMDSIAVQEFSRTLFNMR 200
Query: 190 HEFALPLAKTVFYSDEREILDKVETPCTIFQPSNDAVVPNSVAYYMQEKMKGKSTVEIIE 249
+ AL + +T+F SD R+IL V PC I Q D VP V+ Y+ + +S VE+I
Sbjct: 201 PDIALSVGQTIFQSDMRQILPFVTVPCHILQSVKDLAVPVVVSEYLHANLGCESVVEVIP 260
Query: 250 ADGHFPQLTAHLQLIDVL 267
+DGH PQL++ +I V+
Sbjct: 261 SDGHLPQLSSPDSVIPVI 278
>pdb|1WOM|A Chain A, Crystal Structure Of Rsbq
pdb|1WOM|B Chain B, Crystal Structure Of Rsbq
pdb|1WPR|A Chain A, Crystal Structure Of Rsbq Inhibited By Pmsf
pdb|1WPR|B Chain B, Crystal Structure Of Rsbq Inhibited By Pmsf
Length = 271
Score = 172 bits (436), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 93/263 (35%), Positives = 152/263 (57%), Gaps = 11/263 (4%)
Query: 13 NAKIIGSGKETLVLAHGFGGDQSIWDKITPVLSQHYRVLAFDWLFSGAILNKDHQSL--Y 70
+ K+ GSGK +++ A GFG DQS+W+ + P + +RV+ FD++ SG H L Y
Sbjct: 12 HVKVKGSGKASIMFAPGFGCDQSVWNAVAPAFEEDHRVILFDYVGSG------HSDLRAY 65
Query: 71 NPVKYSSYEAFADDLITLLEENDLKSTLFIGHSMSGMIGCIASVKKPELFKRLILIGTSP 130
+ +Y + + +A D++ + E DLK T+F+GHS+ +IG +AS+++PELF L+++G SP
Sbjct: 66 DLNRYQTLDGYAQDVLDVCEALDLKETVFVGHSVGALIGMLASIRRPELFSHLVMVGPSP 125
Query: 131 RYIN-TDDYEGGFEPSDIENLISNVETNYASWASSFPRLVVDTKDAPSV-EKFENCLKRM 188
Y+N +Y GGFE + L+ +E NY WA+ F V++ D P + E+ E+
Sbjct: 126 CYLNDPPEYYGGFEEEQLLGLLEMMEKNYIGWATVFAATVLNQPDRPEIKEELESRFCST 185
Query: 189 RHEFALPLAKTVFYSDEREILDKVETPCTIFQPSNDAVVPNSVAYYMQEKMKGKSTVEII 248
A AK F+SD RE L KV P I Q ++D + P +V YM + + S+++ +
Sbjct: 186 DPVIARQFAKAAFFSDHREDLSKVTVPSLILQCADDIIAPATVGKYMHQHLP-YSSLKQM 244
Query: 249 EADGHFPQLTAHLQLIDVLNKVL 271
EA GH P ++ + I ++ L
Sbjct: 245 EARGHCPHMSHPDETIQLIGDYL 267
>pdb|3QVM|A Chain A, The Structure Of Olei00960, A Hydrolase From Oleispira
Antarctica
pdb|3QVM|B Chain B, The Structure Of Olei00960, A Hydrolase From Oleispira
Antarctica
Length = 282
Score = 134 bits (337), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 126/243 (51%), Gaps = 7/243 (2%)
Query: 13 NAKIIGSGKETLVLAHGFGGDQSIWDKITPVLSQHYRVLAFDWLFSGAILNKDHQSLYNP 72
N I G G++T++LAHGFG DQ+ W P L + + V+ FD++ SG D +S ++
Sbjct: 20 NINITGGGEKTVLLAHGFGCDQNXWRFXLPELEKQFTVIVFDYVGSG---QSDLES-FST 75
Query: 73 VKYSSYEAFADDLITLLEENDLKSTLFIGHSMSGMIGCIASVKKPELFKRLILIGTSPRY 132
+YSS E +A D+ +L DL + IGHS+S +I IAS + + I SP +
Sbjct: 76 KRYSSLEGYAKDVEEILVALDLVNVSIIGHSVSSIIAGIASTHVGDRISDITXICPSPCF 135
Query: 133 IN-TDDYEGGFEPSDIENLISNVETNYASWASSFPRLVVDTKDAPS-VEKFENCLKRMRH 190
N DY GGFE D+E LI+ + NY WA+ LV + + +
Sbjct: 136 XNFPPDYVGGFERDDLEELINLXDKNYIGWANYLAPLVXGASHSSELIGELSGSFCTTDP 195
Query: 191 EFALPLAKTVFYSDEREILDKVETPCTIFQPSNDAVVPNSVAYYMQEKMKGKSTVEIIEA 250
A AK F+SD R +L+ + TP IFQ + D++ V Y E + S +E+I+A
Sbjct: 196 IVAKTFAKATFFSDYRSLLEDISTPALIFQSAKDSLASPEVGQYXAENIP-NSQLELIQA 254
Query: 251 DGH 253
+GH
Sbjct: 255 EGH 257
>pdb|3OM8|A Chain A, The Crystal Structure Of A Hydrolase From Pseudomonas
Aeruginosa Pa01
pdb|3OM8|B Chain B, The Crystal Structure Of A Hydrolase From Pseudomonas
Aeruginosa Pa01
Length = 266
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 101/244 (41%), Gaps = 24/244 (9%)
Query: 21 KETLVLAHGFGGDQSIWDKITPVLSQHYRVLAFDWLFSGAILNKDHQSLYNPVKYSSYEA 80
K L L++ G WD P L++H+RVL +D + H + P +
Sbjct: 27 KPLLALSNSIGTTLHXWDAQLPALTRHFRVLRYD--------ARGHGASSVPPGPYTLAR 78
Query: 81 FADDLITLLEENDLKSTLFIGHSMSGMIGCIASVKKPELFKRLILIGTS----PRYINTD 136
+D++ LL+ +++ F+G S+ G++G ++ P+ +RL+L TS P +
Sbjct: 79 LGEDVLELLDALEVRRAHFLGLSLGGIVGQWLALHAPQRIERLVLANTSAWLGPAAQWDE 138
Query: 137 DYEGGFEPSDIENLISNVETNYASWASSFPRLVVDTKDAPSVEKFENCLKRM-RHEFALP 195
+ D + N+ FP +++ + P VE+F L RH A
Sbjct: 139 RIAAVLQAEDXSETAAGFLGNW------FPPALLERAE-PVVERFRAXLXATNRHGLAGS 191
Query: 196 LAKTVFYSDEREILDKVETPCTIFQPSNDAVVPNSVAYYMQEKMKGKSTVEIIE---ADG 252
A V +D R L ++E P + + D V S + + G V + ++
Sbjct: 192 FA-AVRDTDLRAQLARIERPTLVIAGAYDTVTAASHGELIAASIAGARLVTLPAVHLSNV 250
Query: 253 HFPQ 256
FPQ
Sbjct: 251 EFPQ 254
>pdb|1U2E|A Chain A, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|B Chain B, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|C Chain C, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|D Chain D, Crystal Structure Of The C-C Bond Hydrolase Mhpc
Length = 289
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 65/272 (23%), Positives = 106/272 (38%), Gaps = 36/272 (13%)
Query: 3 IREQGLSAAMNAKIIGSGKETLVLAHGFGGDQSIW----DKITPVLSQHYRVLAFD---W 55
+ E G + ++ G G ET+VL HG G + W I P++ YRV+ D W
Sbjct: 18 VEEAGKTLRIHFNDCGQGDETVVLLHGSGPGATGWANFSRNIDPLVEAGYRVILLDCPGW 77
Query: 56 LFSGAILNKDHQSLYNPVKYSSYEAFADDLITLLEENDLKSTLFIGHSMSGMIGCIASVK 115
S +++N +S N A L +++++ D+ +G+SM G ++K
Sbjct: 78 GKSDSVVNSGSRSDLN----------ARILKSVVDQLDIAKIHLLGNSMGGHSSVAFTLK 127
Query: 116 KPELFKRLILIGTSPRYINTDDYEGGFEPSDIENLISNVETNYASWASSFPRLVVDT--- 172
PE +L+L+G ++ F P E I + Y +L++D
Sbjct: 128 WPERVGKLVLMGGGTGGMSL------FTPMPTEG-IKRLNQLYRQPTIENLKLMMDIFVF 180
Query: 173 -----KDAPSVEKFENCLKRMRH--EFALPL-AKTVFYSDEREILDKVETPCTIFQPSND 224
DA + N L R H F L A + D L +++ I ND
Sbjct: 181 DTSDLTDALFEARLNNMLSRRDHLENFVKSLEANPKQFPDFGPRLAEIKAQTLIVWGRND 240
Query: 225 AVVPNSVAYYMQEKMKGKSTVEIIEADGHFPQ 256
VP + + G S + I GH+ Q
Sbjct: 241 RFVPMDAGLRLLSGIAG-SELHIFRDCGHWAQ 271
>pdb|2D0D|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) A129v Mutant
Length = 282
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 59/254 (23%), Positives = 107/254 (42%), Gaps = 24/254 (9%)
Query: 13 NAKIIGSGKETLVLAHGFGGDQSI---WDKITPVLSQHYRVLAFDWLFSGAILNKDHQSL 69
N +G G + ++L HG G S W P LS+ YRV+A D + G D
Sbjct: 18 NYHDVGEG-QPVILIHGSGPGVSAYANWRLTIPALSKFYRVIAPDMVGFGF---TDRPEN 73
Query: 70 YNPVKYSSYEAFADDLITLLEENDLKSTLFIGHSMSGMIGCIASVKKPELFKRLILIGT- 128
YN S +++ D +I +++ +++ +G+S G + +++ E R++L+G
Sbjct: 74 YN----YSKDSWVDHIIGIMDALEIEKAHIVGNSFGGGLAIATALRYSERVDRMVLMGAV 129
Query: 129 SPRYINTDDYEG--GFEPS--DIENLISNVETNYASWASSFPRLVVDTKDAPSV-EKFEN 183
R+ T+ G+ PS ++ NL+ + + RL + P E F +
Sbjct: 130 GTRFDVTEGLNAVWGYTPSIENMRNLLDIFAYDRSLVTDELARLRYEASIQPGFQESFSS 189
Query: 184 CLKRMRHEFALPLAKTVFYSDEREILDKVETPCTIFQPSNDAVVPNSVAYYMQEKMKGKS 243
R + LA SDE + + I D VVP S + + E + ++
Sbjct: 190 MFPEPRQRWIDALAS----SDED--IKTLPNETLIIHGREDQVVPLSSSLRLGELID-RA 242
Query: 244 TVEIIEADGHFPQL 257
+ + GH+ Q+
Sbjct: 243 QLHVFGRCGHWTQI 256
>pdb|3HI4|A Chain A, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|B Chain B, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|C Chain C, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|D Chain D, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|E Chain E, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|F Chain F, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
Length = 271
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 61/133 (45%), Gaps = 13/133 (9%)
Query: 18 GSGKETLVLAHGFGGDQSIWD-KITPVLSQHYRVLAFDWLFSGAILNKDHQSLYNPVKYS 76
GSGK L +HG+ D +W+ ++ + S+ YR +AFD + P +
Sbjct: 17 GSGKPVL-FSHGWPLDADMWEYQMEYLSSRGYRTIAFD--------RRGFGRSDQPWTGN 67
Query: 77 SYEAFADDLITLLEENDLKSTLFIGHSMSG--MIGCIASVKKPELFKRLILIGTSPRYIN 134
Y+ FADD+ L+E DLK +G SM G + IA + ++L +P +
Sbjct: 68 DYDTFADDIAQLIEHLDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLGAVTPLFGQ 127
Query: 135 TDDYEGGFEPSDI 147
DY G P D+
Sbjct: 128 KPDYPQGV-PLDV 139
>pdb|1IUN|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUN|B Chain B, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUO|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Acetates
pdb|1IUP|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Isobutyrates
pdb|1UK6|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Propionate
pdb|1UK7|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With N-Butyrate
pdb|1UK8|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With N-valerate
pdb|1UK9|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Isovalerate
pdb|1UKA|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With (S)-2-Methylbutyrate
pdb|1UKB|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With Benzoate
Length = 282
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 58/254 (22%), Positives = 108/254 (42%), Gaps = 24/254 (9%)
Query: 13 NAKIIGSGKETLVLAHGFGGDQSI---WDKITPVLSQHYRVLAFDWLFSGAILNKDHQSL 69
N +G G + ++L HG G S W P LS+ YRV+A D + G D
Sbjct: 18 NYHDVGEG-QPVILIHGSGPGVSAYANWRLTIPALSKFYRVIAPDMVGFGF---TDRPEN 73
Query: 70 YNPVKYSSYEAFADDLITLLEENDLKSTLFIGHSMSGMIGCIASVKKPELFKRLILIGTS 129
YN S +++ D +I +++ +++ +G++ G + +++ E R++L+G +
Sbjct: 74 YN----YSKDSWVDHIIGIMDALEIEKAHIVGNAFGGGLAIATALRYSERVDRMVLMGAA 129
Query: 130 -PRYINTDDYEG--GFEPS--DIENLISNVETNYASWASSFPRLVVDTKDAPSV-EKFEN 183
R+ T+ G+ PS ++ NL+ + + RL + P E F +
Sbjct: 130 GTRFDVTEGLNAVWGYTPSIENMRNLLDIFAYDRSLVTDELARLRYEASIQPGFQESFSS 189
Query: 184 CLKRMRHEFALPLAKTVFYSDEREILDKVETPCTIFQPSNDAVVPNSVAYYMQEKMKGKS 243
R + LA SDE + + I D VVP S + + E + ++
Sbjct: 190 MFPEPRQRWIDALAS----SDED--IKTLPNETLIIHGREDQVVPLSSSLRLGELID-RA 242
Query: 244 TVEIIEADGHFPQL 257
+ + GH+ Q+
Sbjct: 243 QLHVFGRCGHWTQI 256
>pdb|3HEA|A Chain A, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|B Chain B, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|C Chain C, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|D Chain D, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|E Chain E, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|F Chain F, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
Length = 271
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 61/133 (45%), Gaps = 13/133 (9%)
Query: 18 GSGKETLVLAHGFGGDQSIWD-KITPVLSQHYRVLAFDWLFSGAILNKDHQSLYNPVKYS 76
GSGK L +HG+ D +W+ ++ + S+ YR +AFD + P +
Sbjct: 17 GSGKPVL-FSHGWPLDADMWEYQMEYLSSRGYRTIAFD--------RRGFGRSDQPWTGN 67
Query: 77 SYEAFADDLITLLEENDLKSTLFIGHSMSG--MIGCIASVKKPELFKRLILIGTSPRYIN 134
Y+ FADD+ L+E DLK +G SM G + IA + ++L +P +
Sbjct: 68 DYDTFADDIAQLIEHLDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLGAVTPIFGQ 127
Query: 135 TDDYEGGFEPSDI 147
DY G P D+
Sbjct: 128 KPDYPQGV-PLDV 139
>pdb|3IA2|A Chain A, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|B Chain B, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|C Chain C, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|D Chain D, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|E Chain E, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|F Chain F, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
Length = 271
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 61/133 (45%), Gaps = 13/133 (9%)
Query: 18 GSGKETLVLAHGFGGDQSIWD-KITPVLSQHYRVLAFDWLFSGAILNKDHQSLYNPVKYS 76
GSGK L +HG+ D +W+ ++ + S+ YR +AFD + P +
Sbjct: 17 GSGKPVL-FSHGWLLDADMWEYQMEYLSSRGYRTIAFD--------RRGFGRSDQPWTGN 67
Query: 77 SYEAFADDLITLLEENDLKSTLFIGHSMSG--MIGCIASVKKPELFKRLILIGTSPRYIN 134
Y+ FADD+ L+E DLK +G SM G + IA + ++L +P +
Sbjct: 68 DYDTFADDIAQLIEHLDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLGAVTPLFGQ 127
Query: 135 TDDYEGGFEPSDI 147
DY G P D+
Sbjct: 128 KPDYPQGV-PLDV 139
>pdb|3T4U|A Chain A, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|B Chain B, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|C Chain C, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|D Chain D, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|E Chain E, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|F Chain F, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|A Chain A, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|B Chain B, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|C Chain C, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|D Chain D, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|E Chain E, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|F Chain F, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
Length = 271
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 61/133 (45%), Gaps = 13/133 (9%)
Query: 18 GSGKETLVLAHGFGGDQSIWD-KITPVLSQHYRVLAFDWLFSGAILNKDHQSLYNPVKYS 76
GSGK L +HG+ D +W+ ++ + S+ YR +AFD + P +
Sbjct: 17 GSGKPVL-FSHGWILDADMWEYQMEYLSSRGYRTIAFD--------RRGFGRSDQPWTGN 67
Query: 77 SYEAFADDLITLLEENDLKSTLFIGHSMSG--MIGCIASVKKPELFKRLILIGTSPRYIN 134
Y+ FADD+ L+E DLK +G SM G + IA + ++L +P +
Sbjct: 68 DYDTFADDIAQLIEHLDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLGAVTPLFGQ 127
Query: 135 TDDYEGGFEPSDI 147
DY G P D+
Sbjct: 128 KPDYPQGV-PLDV 139
>pdb|4ETW|A Chain A, Structure Of The Enzyme-Acp Substrate Gatekeeper Complex
Required For Biotin Synthesis
pdb|4ETW|C Chain C, Structure Of The Enzyme-Acp Substrate Gatekeeper Complex
Required For Biotin Synthesis
Length = 264
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 54/248 (21%), Positives = 98/248 (39%), Gaps = 30/248 (12%)
Query: 18 GSGKETLVLAHGFGGDQSIWDKITPVLSQHYRVLAFDWLFSGAILNKDHQSLYNPVKYSS 77
G G LVL HG+G + +W I LS H+ + D G ++ +L
Sbjct: 10 GQGNVHLVLLHGWGLNAEVWRCIDEELSSHFTLHLVD--LPGFGRSRGFGAL-------- 59
Query: 78 YEAFADDLITLLEENDLKSTLFIGHSMSGMIGCIASVKKPELFKRLILIGTSPRYINTDD 137
+ AD +L++ K+ +++G ++ G++ ++ PE + L+ + +SP + D+
Sbjct: 60 --SLADMAEAVLQQAPDKA-IWLGWALGGLVASQIALTHPERVQALVTVASSPCFSARDE 116
Query: 138 YEGGFEPSDIENLISNVETNYASWASSFPRLVVDTKDAPSVEKFENCLKRMRHEFALP-- 195
+ G +P + + ++ F L + T + + LK+ +P
Sbjct: 117 WP-GIKPDVLAGFQQQLSDDFQRTVERF--LALQTMGTETARQDARALKKTVLALPMPEV 173
Query: 196 --------LAKTVFYSDEREILDKVETPCTIFQPSNDAVVPNSVAYYMQEKMKGKSTVEI 247
+ KTV D R+ L V P D +VP V M +K+ S I
Sbjct: 174 DVLNGGLEILKTV---DLRQPLQNVSMPFLRLYGYLDGLVPRKVV-PMLDKLWPHSESYI 229
Query: 248 IEADGHFP 255
H P
Sbjct: 230 FAKAAHAP 237
>pdb|1VA4|A Chain A, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|B Chain B, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|C Chain C, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|D Chain D, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|E Chain E, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|F Chain F, Pseudomonas Fluorescens Aryl Esterase
Length = 279
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 61/133 (45%), Gaps = 13/133 (9%)
Query: 18 GSGKETLVLAHGFGGDQSIWD-KITPVLSQHYRVLAFDWLFSGAILNKDHQSLYNPVKYS 76
GSGK L +HG+ D +W+ ++ + S+ YR +AFD + P +
Sbjct: 17 GSGKPVL-FSHGWLLDADMWEYQMEYLSSRGYRTIAFD--------RRGFGRSDQPWTGN 67
Query: 77 SYEAFADDLITLLEENDLKSTLFIGHSMSG--MIGCIASVKKPELFKRLILIGTSPRYIN 134
Y+ FADD+ L+E DLK +G SM G + IA + ++L +P +
Sbjct: 68 DYDTFADDIAQLIEHLDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLGAVTPLFGQ 127
Query: 135 TDDYEGGFEPSDI 147
DY G P D+
Sbjct: 128 KPDYPQGV-PLDV 139
>pdb|1ZOI|A Chain A, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
pdb|1ZOI|B Chain B, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
pdb|1ZOI|C Chain C, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
Length = 276
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/211 (19%), Positives = 82/211 (38%), Gaps = 18/211 (8%)
Query: 28 HGFGGDQSIWD-KITPVLSQHYRVLAFDWLFSGAILNKDHQSLYNPVKYSSYEAFADDLI 86
HG+ WD ++ L+ YRV+A D + H + +ADD+
Sbjct: 29 HGWPLSADDWDAQLLFFLAHGYRVVAHD--------RRGHGRSSQVWDGHDMDHYADDVA 80
Query: 87 TLLEENDLKSTLFIGHSMSG--MIGCIASVKKPELFKRLILIGTSPRYINTDDYEGGFEP 144
++ ++ + +GHS G ++ +A + ++ K +++ P + T GG
Sbjct: 81 AVVAHLGIQGAVHVGHSTGGGEVVRYMARHPEDKVAKAVLIAAVPPLMVQTPGNPGGLPK 140
Query: 145 SDIENLISNVETNYASWASSFPRLVVDTKDAPSVEKFENCLKRMRHEFALPLAKTVF--- 201
S + + V +N A + P + P VE E + + + AK +
Sbjct: 141 SVFDGFQAQVASNRAQFYRDVPAGPFYGYNRPGVEASEGIIGNWWRQGMIGSAKAHYDGI 200
Query: 202 ----YSDEREILDKVETPCTIFQPSNDAVVP 228
+D E L ++ P + +D +VP
Sbjct: 201 VAFSQTDFTEDLKGIQQPVLVMHGDDDQIVP 231
>pdb|1J1I|A Chain A, Crystal Structure Of A His-Tagged Serine Hydrolase
Involved In The Carbazole Degradation (Carc Enzyme)
Length = 296
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 89/221 (40%), Gaps = 57/221 (25%)
Query: 37 WDKITPVLSQHYRVLAFDWLFSGAILNKDHQSLYNPVKYSSYEAFA--DDLITLLEENDL 94
W + P+L++HYRV+A D L G D ++Y+ D I + +
Sbjct: 55 WRNVIPILARHYRVIAMDMLGFGKTAKPD-------IEYTQDRRIRHLHDFIKAMNFDGK 107
Query: 95 KSTLFIGHSMSGMIGCIASVKKPELFKRLILIGTSP---------RYINTDDY--EG--- 140
S +G+SM G G SV EL L+L+G++ R I D+ EG
Sbjct: 108 VS--IVGNSMGGATGLGVSVLHSELVNALVLMGSAGLVVEIHEDLRPIINYDFTREGMVH 165
Query: 141 --------GFEPSDIENLISNVETNYASWASSFPRLVVDTKDAPSVEKFENCLKRMRHEF 192
GF+ I++ + N YA+ D + + + ++ +R +
Sbjct: 166 LVKALTNDGFK---IDDAMINSRYTYAT-------------DEATRKAYVATMQWIREQG 209
Query: 193 ALPLAKTVFYSDEREILDKVETPCTIFQPSNDAVVPNSVAY 233
L FY + E + KV+ P + Q +D VVP AY
Sbjct: 210 GL------FY--DPEFIRKVQVPTLVVQGKDDKVVPVETAY 242
>pdb|1M33|A Chain A, Crystal Structure Of Bioh At 1.7 A
Length = 258
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/248 (21%), Positives = 96/248 (38%), Gaps = 30/248 (12%)
Query: 18 GSGKETLVLAHGFGGDQSIWDKITPVLSQHYRVLAFDWLFSGAILNKDHQSLYNPVKYSS 77
G G LVL HG+G + +W I LS H+ + D G ++ +L
Sbjct: 10 GQGNVHLVLLHGWGLNAEVWRCIDEELSSHFTLHLVD--LPGFGRSRGFGAL-------- 59
Query: 78 YEAFADDLITLLEENDLKSTLFIGHSMSGMIGCIASVKKPELFKRLILIGTSPRYINTDD 137
+ AD +L++ K+ +++G S+ G++ ++ PE + L+ + +SP + D+
Sbjct: 60 --SLADXAEAVLQQAPDKA-IWLGWSLGGLVASQIALTHPERVRALVTVASSPCFSARDE 116
Query: 138 YEGGFEPSDIENLISNVETNYASWASSFPRLVVDTKDAPSVEKFENCLKRMRHEFALP-- 195
+ G +P + + + F L + T + + LK+ P
Sbjct: 117 WP-GIKPDVLAGFQQQLSDDQQRTVERF--LALQTXGTETARQDARALKKTVLALPXPEV 173
Query: 196 --------LAKTVFYSDEREILDKVETPCTIFQPSNDAVVPNSVAYYMQEKMKGKSTVEI 247
+ KTV D R+ L V P D +VP V + +K+ S I
Sbjct: 174 DVLNGGLEILKTV---DLRQPLQNVSXPFLRLYGYLDGLVPRKVVPXL-DKLWPHSESYI 229
Query: 248 IEADGHFP 255
H P
Sbjct: 230 FAKAAHAP 237
>pdb|1A8S|A Chain A, Chloroperoxidase FPROPIONATE COMPLEX
Length = 273
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 62/264 (23%), Positives = 102/264 (38%), Gaps = 27/264 (10%)
Query: 15 KIIGSGKETLVLAHGFGGDQSIWD-KITPVLSQHYRVLAFDWLFSGAILNKDHQSLYNPV 73
K GSG + +V +HG+ + W+ ++ + +Q YRV+A D + H P
Sbjct: 14 KDWGSG-QPIVFSHGWPLNADSWESQMIFLAAQGYRVIAHD--------RRGHGRSSQPW 64
Query: 74 KYSSYEAFADDLITLLEENDLKSTLFIGHSMSG--MIGCIASVKKPELFKRLILIGTSPR 131
+ + +ADDL L+E DL+ + G S G + I + K ++ P
Sbjct: 65 SGNDMDTYADDLAQLIEHLDLRDAVLFGFSTGGGEVARYIGRHGTARVAKAGLISAVPPL 124
Query: 132 YINTDDYEGGFEPSDIENL----ISNVETNYASWASSFPRLVVDTKDAPS----VEKFEN 183
+ T+ GG + + +++ Y AS P + A S V+ F
Sbjct: 125 MLKTEANPGGLPMEVFDGIRQASLADRSQLYKDLASG-PFFGFNQPGAKSSAGMVDWFWL 183
Query: 184 CLKRMRHEFALPLAKTVFYSDEREILDKVETPCTIFQPSNDAVVPNSVAYYMQEKMKGKS 243
H+ A K +D E L K++ P + D VVP + + S
Sbjct: 184 QGMAAGHKNAYDCIKAFSETDFTEDLKKIDVPTLVVHGDADQVVPIEASGIASAALVKGS 243
Query: 244 TVEIIEA------DGHFPQLTAHL 261
T++I D H QL A L
Sbjct: 244 TLKIYSGAPHGLTDTHKDQLNADL 267
>pdb|2OCK|A Chain A, Crystal Structure Of Valacyclovir Hydrolase D123n Mutant
Length = 254
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 83/197 (42%), Gaps = 29/197 (14%)
Query: 78 YEAFADDLITLLEENDLKSTLFIGHSMSGMIGCIASVKKPELFKRLILIGTSPRYINTDD 137
+E A D + L++ K +G S G+ IA+ K P ++++ G + Y+ +D
Sbjct: 77 FERDAKDAVDLMKALKFKKVSLLGWSNGGITALIAAAKYPSYIHKMVIWGANA-YVTDED 135
Query: 138 ---YEGGFEPSDI-ENLISNVETNYASWASSFPRLVVDTKDAPSVEKFENCLKRMRHEFA 193
YEG + S E +E Y F R + EK+ + +++ +H
Sbjct: 136 SMIYEGIRDVSKWSERTRKPLEALYGY--DYFAR---------TCEKWVDGIRQFKH--- 181
Query: 194 LPLAKTVFYSDEREILDKVETPCTIFQPSNDAVVPNSVAYYMQEKMKGKSTVEIIEADGH 253
LP R +L +V+ P I D +VP A ++ + +KG S + ++ H
Sbjct: 182 LPDGNIC-----RHLLPRVQCPALIVHGEKDPLVPRFHADFIHKHVKG-SRLHLMPEGKH 235
Query: 254 FPQLTAHLQLIDVLNKV 270
HL+ D NK+
Sbjct: 236 ----NLHLRFADEFNKL 248
>pdb|2OCG|A Chain A, Crystal Structure Of Human Valacyclovir Hydrolase
pdb|2OCI|A Chain A, Crystal Structure Of Valacyclovir Hydrolase Complexed With
A Product Analogue
Length = 254
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 83/197 (42%), Gaps = 29/197 (14%)
Query: 78 YEAFADDLITLLEENDLKSTLFIGHSMSGMIGCIASVKKPELFKRLILIGTSPRYINTDD 137
+E A D + L++ K +G S G+ IA+ K P ++++ G + Y+ +D
Sbjct: 77 FERDAKDAVDLMKALKFKKVSLLGWSDGGITALIAAAKYPSYIHKMVIWGANA-YVTDED 135
Query: 138 ---YEGGFEPSDI-ENLISNVETNYASWASSFPRLVVDTKDAPSVEKFENCLKRMRHEFA 193
YEG + S E +E Y F R + EK+ + +++ +H
Sbjct: 136 SMIYEGIRDVSKWSERTRKPLEALYGY--DYFAR---------TCEKWVDGIRQFKH--- 181
Query: 194 LPLAKTVFYSDEREILDKVETPCTIFQPSNDAVVPNSVAYYMQEKMKGKSTVEIIEADGH 253
LP R +L +V+ P I D +VP A ++ + +KG S + ++ H
Sbjct: 182 LPDGNIC-----RHLLPRVQCPALIVHGEKDPLVPRFHADFIHKHVKG-SRLHLMPEGKH 235
Query: 254 FPQLTAHLQLIDVLNKV 270
HL+ D NK+
Sbjct: 236 ----NLHLRFADEFNKL 248
>pdb|2XUA|A Chain A, Crystal Structure Of The Enol-Lactonase From Burkholderia
Xenovorans Lb400
pdb|2XUA|H Chain H, Crystal Structure Of The Enol-Lactonase From Burkholderia
Xenovorans Lb400
Length = 266
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 8/108 (7%)
Query: 24 LVLAHGFGGDQSIWDKITPVLSQHYRVLAFDWLFSGAILNKDHQSLYNPVKYSSYEAFAD 83
+VL++ G D S W LS+H+RVL +D + H P + E
Sbjct: 29 IVLSNSLGTDLSXWAPQVAALSKHFRVLRYD--------TRGHGHSEAPKGPYTIEQLTG 80
Query: 84 DLITLLEENDLKSTLFIGHSMSGMIGCIASVKKPELFKRLILIGTSPR 131
D++ L + + F G S G+ G + + + +R+ L T+ R
Sbjct: 81 DVLGLXDTLKIARANFCGLSXGGLTGVALAARHADRIERVALCNTAAR 128
>pdb|3ANS|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANS|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
Length = 336
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 12/115 (10%)
Query: 17 IGSGKETLVLAHGFGGDQSIWDKITPVLSQH-YRVLAFDWLFSGAILNKDHQSLYNPVKY 75
+GSG + L HGF W P L+Q YRVLA D K + P +
Sbjct: 36 LGSGP-AVCLCHGFPESWYSWRYQIPALAQAGYRVLAMD--------MKGYGESSAPPEI 86
Query: 76 SSY--EAFADDLITLLEENDLKSTLFIGHSMSGMIGCIASVKKPELFKRLILIGT 128
Y E +++T L++ L +FIGH GM+ ++ PE + + + T
Sbjct: 87 EEYCMEVLCKEMVTFLDKLGLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNT 141
>pdb|3PDC|A Chain A, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
pdb|3PDC|B Chain B, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
Length = 344
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 12/115 (10%)
Query: 17 IGSGKETLVLAHGFGGDQSIWDKITPVLSQH-YRVLAFDWLFSGAILNKDHQSLYNPVKY 75
+GSG + L HGF W P L+Q YRVLA D K + P +
Sbjct: 51 LGSGP-AVCLCHGFPESWYSWRYQIPALAQAGYRVLAMD--------MKGYGESSAPPEI 101
Query: 76 SSY--EAFADDLITLLEENDLKSTLFIGHSMSGMIGCIASVKKPELFKRLILIGT 128
Y E +++T L++ L +FIGH GM+ ++ PE + + + T
Sbjct: 102 EEYCMEVLCKEMVTFLDKLGLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNT 156
>pdb|2OCL|A Chain A, Crystal Structure Of Valacyclovir Hydrolase S122a Mutant
Length = 254
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 83/197 (42%), Gaps = 29/197 (14%)
Query: 78 YEAFADDLITLLEENDLKSTLFIGHSMSGMIGCIASVKKPELFKRLILIGTSPRYINTDD 137
+E A D + L++ K +G + G+ IA+ K P ++++ G + Y+ +D
Sbjct: 77 FERDAKDAVDLMKALKFKKVSLLGWADGGITALIAAAKYPSYIHKMVIWGANA-YVTDED 135
Query: 138 ---YEGGFEPSDI-ENLISNVETNYASWASSFPRLVVDTKDAPSVEKFENCLKRMRHEFA 193
YEG + S E +E Y F R + EK+ + +++ +H
Sbjct: 136 SMIYEGIRDVSKWSERTRKPLEALYGY--DYFAR---------TCEKWVDGIRQFKH--- 181
Query: 194 LPLAKTVFYSDEREILDKVETPCTIFQPSNDAVVPNSVAYYMQEKMKGKSTVEIIEADGH 253
LP R +L +V+ P I D +VP A ++ + +KG S + ++ H
Sbjct: 182 LPDGNIC-----RHLLPRVQCPALIVHGEKDPLVPRFHADFIHKHVKG-SRLHLMPEGKH 235
Query: 254 FPQLTAHLQLIDVLNKV 270
HL+ D NK+
Sbjct: 236 ----NLHLRFADEFNKL 248
>pdb|1C4X|A Chain A, 2-Hydroxy-6-Oxo-6-Phenylhexa-2,4-Dienoate Hydrolase (Bphd)
From Rhodococcus Sp. Strain Rha1
Length = 285
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 51/252 (20%), Positives = 104/252 (41%), Gaps = 31/252 (12%)
Query: 23 TLVLAHGFGGDQ---SIWDKITPVLSQHYRVLAFDWLFSGAILNKDHQSLYNPVKYSSYE 79
+VL HG G S W I P L++++ V+A D + G ++ Y S
Sbjct: 31 AVVLLHGAGPGAHAASNWRPIIPDLAENFFVVAPDLIGFG---QSEYPETYPGHIMSWVG 87
Query: 80 AFADDLITLLEENDLKSTLFIGHSMSGMIGCIASVKKPELFKRLILIGTSPRYINTDDYE 139
+ ++ L+ ++ + +G+SM G + V+ PE F ++ L+G+ +N
Sbjct: 88 MRVEQILGLMNHFGIEKSHIVGNSMGGAVTLQLVVEAPERFDKVALMGSVGAPMNA---- 143
Query: 140 GGFEPSDIENLISNVE----TNYASWASSFPRLVVDTKDAPSVEKFENCLKRMRHEFALP 195
P ++ L++ T Y SF V D ++ P +E+ + ++ +
Sbjct: 144 ---RPPELARLLAFYADPRLTPYRELIHSF---VYDPENFPGMEEIVKSRFEVANDPEVR 197
Query: 196 LAKTVFYSDEREILDKVETP----------CTIFQPSNDAVVPNSVAYYMQEKMKGKSTV 245
+ V + + ++ + P +F D +VP + Y+ + +K V
Sbjct: 198 RIQEVMFESMKAGMESLVIPPATLGRLPHDVLVFHGRQDRIVPLDTSLYLTKHLKHAELV 257
Query: 246 EIIEADGHFPQL 257
+++ GH+ QL
Sbjct: 258 -VLDRCGHWAQL 268
>pdb|3B12|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase D104
Mutant From Burkholderia Sp. Fa1 In Complex With
Fluoroacetate
pdb|3B12|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase D104
Mutant From Burkholderia Sp. Fa1 In Complex With
Fluoroacetate
Length = 304
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 51/122 (41%), Gaps = 11/122 (9%)
Query: 16 IIGSGKETLVLAHGFGGDQSIWDKITPVLSQHYRVLAFDWLFSGA----ILNKDHQSLYN 71
++G L+L HGF + +W ++ P+L+ Y V+ D G + DH +
Sbjct: 20 VVGGSGPALLLLHGFPQNLHMWARVAPLLANEYTVVCADLRGYGGSSKPVGAPDHANY-- 77
Query: 72 PVKYSSYEAFADDLITLLEENDLKSTLFIGHSMSGMIGCIASVKKPELFKRLILIGTSPR 131
S+ A A D L+ + +GH+ G G ++ P+ L ++ P
Sbjct: 78 -----SFRAMASDQRELMRTLGFERFHLVGHARGGRTGHRMALDHPDSVLSLAVLDIIPT 132
Query: 132 YI 133
Y+
Sbjct: 133 YV 134
>pdb|1S8O|A Chain A, Human Soluble Epoxide Hydrolase
pdb|1VJ5|A Chain A, Human Soluble Epoxide Hydrolase- N-Cyclohexyl-N'-(4-
Iodophenyl)urea Complex
pdb|1ZD2|P Chain P, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Ethanoic Acid Complex
pdb|1ZD3|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Butyric Acid Complex
pdb|1ZD4|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Hexanoic Acid Complex
pdb|1ZD5|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Heptanoic Acid Complex
pdb|3I1Y|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3I28|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3KOO|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3OTQ|A Chain A, Soluble Epoxide Hydrolase In Complex With Pyrazole
Antagonist
pdb|4HAI|A Chain A, Crystal Structure Of Human Soluble Epoxide Hydrolase
Complexed With N-
Cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide
Length = 555
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 12/115 (10%)
Query: 17 IGSGKETLVLAHGFGGDQSIWDKITPVLSQH-YRVLAFDWLFSGAILNKDHQSLYNPVKY 75
+GSG + L HGF W P L+Q YRVLA D K + P +
Sbjct: 255 LGSGP-AVCLCHGFPESWYSWRYQIPALAQAGYRVLAMD--------MKGYGESSAPPEI 305
Query: 76 SSY--EAFADDLITLLEENDLKSTLFIGHSMSGMIGCIASVKKPELFKRLILIGT 128
Y E +++T L++ L +FIGH GM+ ++ PE + + + T
Sbjct: 306 EEYCMEVLCKEMVTFLDKLGLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNT 360
>pdb|1Y37|A Chain A, Structure Of Fluoroacetate Dehalogenase From Burkholderia
Sp. Fa1
pdb|1Y37|B Chain B, Structure Of Fluoroacetate Dehalogenase From Burkholderia
Sp. Fa1
Length = 304
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 11/122 (9%)
Query: 16 IIGSGKETLVLAHGFGGDQSIWDKITPVLSQHYRVLAFDWLFSGA----ILNKDHQSLYN 71
++G L+L HGF + +W ++ P+L+ Y V+ D G + DH +
Sbjct: 20 VVGGSGPALLLLHGFPQNLHMWARVAPLLANEYTVVCADLRGYGGSSKPVGAPDHANY-- 77
Query: 72 PVKYSSYEAFADDLITLLEENDLKSTLFIGHSMSGMIGCIASVKKPELFKRLILIGTSPR 131
S+ A A D L+ + +GH G G ++ P+ L ++ P
Sbjct: 78 -----SFRAMASDQRELMRTLGFERFHLVGHDRGGRTGHRMALDHPDSVLSLAVLDIIPT 132
Query: 132 YI 133
Y+
Sbjct: 133 YV 134
>pdb|3QIT|A Chain A, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|B Chain B, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|C Chain C, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|D Chain D, Thioesterase Domain From Curacin Biosynthetic Pathway
Length = 286
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 79/190 (41%), Gaps = 19/190 (10%)
Query: 18 GSGKETLVLA-HGFGGDQSIWDKIT-PVLSQHYRVLAFDWLFSGAILNKDHQSLYNPVKY 75
GS + +VL HG W ++ P+ +Q YRV+A D G H +
Sbjct: 22 GSPEHPVVLCIHGILEQGLAWQEVALPLAAQGYRVVAPDLFGHG---RSSHLEMVTSYSS 78
Query: 76 SSYEAFADDLITLLEENDLKSTLFIGHSMSGMIGCIASVKKPELFKRLILIGTSPRYINT 135
++ A D +I L + L L +GHSM M+ + +P+ K LIL+
Sbjct: 79 LTFLAQIDRVIQELPDQPL---LLVGHSMGAMLATAIASVRPKKIKELILV--------- 126
Query: 136 DDYEGGFEPSDIENLISNVETNYASWASSFPRLVVDTKDAPSVEKFENCLKRMRHEFALP 195
+ E S E+ ++ + T + SS P+ + A + + + + EF+
Sbjct: 127 -ELPLPAEESKKESAVNQL-TTCLDYLSSTPQHPIFPDVATAASRLRQAIPSLSEEFSYI 184
Query: 196 LAKTVFYSDE 205
LA+ + ++
Sbjct: 185 LAQRITQPNQ 194
>pdb|3QYJ|A Chain A, Crystal Structure Of Alr0039, A Putative AlphaBETA
HYDROLASE FROM Nostoc Sp Pcc 7120.
pdb|3QYJ|B Chain B, Crystal Structure Of Alr0039, A Putative AlphaBETA
HYDROLASE FROM Nostoc Sp Pcc 7120
Length = 291
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 55/123 (44%), Gaps = 4/123 (3%)
Query: 10 AAMNAKIIGSGKETLVLAHGFGGDQSIWDKITPVLSQHYRVLAFDWLFSGAILNKDHQSL 69
A +N G G L+L HG+ +W KI P+L+ ++ V+A D G + S+
Sbjct: 15 ARINLVKAGHGAPLLLL-HGYPQTHVMWHKIAPLLANNFTVVATD--LRGYGDSSRPASV 71
Query: 70 YNPVKYSSYEAFADDLITLLEENDLKSTLFIGHSMSGMIGCIASVKKPELFKRLILIGTS 129
+ + YS A D + ++ + + +GH + ++ P K+L L+ +
Sbjct: 72 PHHINYSK-RVMAQDQVEVMSKLGYEQFYVVGHDRGARVAHRLALDHPHRVKKLALLDIA 130
Query: 130 PRY 132
P +
Sbjct: 131 PTH 133
>pdb|3KXP|A Chain A, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|B Chain B, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|C Chain C, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|D Chain D, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|E Chain E, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|F Chain F, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|G Chain G, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|H Chain H, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|I Chain I, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|J Chain J, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|K Chain K, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|L Chain L, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
Length = 314
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 57/127 (44%), Gaps = 14/127 (11%)
Query: 12 MNAKIIGSGKETLVLAHGFGGDQSIWDKITPVLSQHYRVLAFDWLFSGAILNKDHQSLYN 71
+N + GSG L HG + ++++ + LS + +A D + H
Sbjct: 60 LNVREKGSGPLXLFF-HGITSNSAVFEPLXIRLSDRFTTIAVD--------QRGHGLSDK 110
Query: 72 PVKYSSYEA--FADDLITLLEENDLKSTLFIGHSMSGMIGCIASVKKPELFKRLILIGTS 129
P + YEA +ADD+ L+ + +GHS+ A+ K P+L + ++ I +
Sbjct: 111 P--ETGYEANDYADDIAGLIRTLARGHAILVGHSLGARNSVTAAAKYPDLVRSVVAIDFT 168
Query: 130 PRYINTD 136
P YI T+
Sbjct: 169 P-YIETE 174
>pdb|1CQZ|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CQZ|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CR6|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1CR6|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1EK1|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK1|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK2|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
pdb|1EK2|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
Length = 554
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 12/115 (10%)
Query: 17 IGSGKETLVLAHGFGGDQSIWDKITPVLSQH-YRVLAFDWLFSGAILNKDHQSLYNPVKY 75
+GSG L L HGF W P L+Q +RVLA D K + +P +
Sbjct: 253 MGSGP-ALCLCHGFPESWFSWRYQIPALAQAGFRVLAID--------MKGYGDSSSPPEI 303
Query: 76 SSY--EAFADDLITLLEENDLKSTLFIGHSMSGMIGCIASVKKPELFKRLILIGT 128
Y E +++T L++ + +FIGH +G++ ++ PE + + + T
Sbjct: 304 EEYAMELLCKEMVTFLDKLGIPQAVFIGHDWAGVMVWNMALFYPERVRAVASLNT 358
>pdb|1A88|A Chain A, Chloroperoxidase L
pdb|1A88|B Chain B, Chloroperoxidase L
pdb|1A88|C Chain C, Chloroperoxidase L
Length = 275
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/256 (20%), Positives = 102/256 (39%), Gaps = 27/256 (10%)
Query: 24 LVLAHGFGGDQSIWD-KITPVLSQHYRVLAFDWLFSGAILNKDHQSLYNPVKYSSYEAFA 82
+V HG+ WD ++ LS YRV+A D + H P + +A
Sbjct: 24 VVFHHGWPLSADDWDNQMLFFLSHGYRVIAHD--------RRGHGRSDQPSTGHDMDTYA 75
Query: 83 DDLITLLEENDLKSTLFIGHSMSG--MIGCIASVKKPELFKRLILIGTSPRYINTDDYEG 140
D+ L E DL+ + IGHS G + +A + + K +++ P + +D
Sbjct: 76 ADVAALTEALDLRGAVHIGHSTGGGEVARYVARAEPGRVAKAVLVSAVPPVMVKSDTNPD 135
Query: 141 GFEPSDIENLISNVETNYASW---ASSFPRLVVDTKDAPSVEKFEN--CLKRM------R 189
G + + + N A + S P + + A + + L+ M
Sbjct: 136 GLPLEVFDEFRAALAANRAQFYIDVPSGPFYGFNREGATVSQGLIDHWWLQGMMGAANAH 195
Query: 190 HEFALPLAKTVFYSDEREILDKVETPCTIFQPSNDAVVPNSVAYYMQEKMKGKSTVEIIE 249
+E ++T F D L +++ P + ++D VVP + A ++ +T++ E
Sbjct: 196 YECIAAFSETDFTDD----LKRIDVPVLVAHGTDDQVVPYADAAPKSAELLANATLKSYE 251
Query: 250 ADGHFPQLTAHLQLID 265
H L+ H ++++
Sbjct: 252 GLPHG-MLSTHPEVLN 266
>pdb|3BF8|A Chain A, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
pdb|3BF8|B Chain B, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
Length = 255
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%)
Query: 77 SYEAFADDLITLLEENDLKSTLFIGHSMSGMIGCIASVKKPELFKRLILIGTSP 130
+Y A A DL+ L+ + FIGHSM G + P+ +L+ I +P
Sbjct: 63 NYPAMAQDLVDTLDAQQIDKATFIGHSMGGKAVMALTALAPDRIDKLVAIDIAP 116
>pdb|3FOB|A Chain A, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
pdb|3FOB|B Chain B, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
pdb|3FOB|C Chain C, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
Length = 281
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 97/246 (39%), Gaps = 19/246 (7%)
Query: 18 GSGKETLVLAHGFGGDQSIWDKITPVLSQ-HYRVLAFDWLFSGAILNKDHQSLYNPVKYS 76
G+GK +VL HG+ W+ P L + YRV+ +D + P +
Sbjct: 25 GTGKP-VVLIHGWPLSGRSWEYQVPALVEAGYRVITYD--------RRGFGKSSQPWEGY 75
Query: 77 SYEAFADDLITLLEENDLKSTLFIGHSMSGM-IGCIASVKKPELFKRLILIGTSPRYI-- 133
Y+ F DL LLE+ +L++ +G S G + S + ++++ G P Y+
Sbjct: 76 EYDTFTSDLHQLLEQLELQNVTLVGFSXGGGEVARYISTYGTDRIEKVVFAGAVPPYLYK 135
Query: 134 NTDDYEGGFEPSDIENLISNVETNYASWASSFPRLVVDTKDAPSV--EKFE----NCLKR 187
+ D EG + + IE S V + ++ F + D + E F +
Sbjct: 136 SEDHPEGALDDATIETFKSGVINDRLAFLDEFTKGFFAAGDRTDLVSESFRLYNWDIAAG 195
Query: 188 MRHEFALPLAKTVFYSDEREILDKVETPCTIFQPSNDAVVPNSVAYYMQEKMKGKSTVEI 247
+ L +D R+ L+K P I +DA VP + + + S V +
Sbjct: 196 ASPKGTLDCITAFSKTDFRKDLEKFNIPTLIIHGDSDATVPFEYSGKLTHEAIPNSKVAL 255
Query: 248 IEADGH 253
I+ H
Sbjct: 256 IKGGPH 261
>pdb|3V48|A Chain A, Crystal Structure Of The Putative AlphaBETA HYDROLASE RUTD
FROM E.Coli
pdb|3V48|B Chain B, Crystal Structure Of The Putative AlphaBETA HYDROLASE RUTD
FROM E.Coli
Length = 268
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 54/240 (22%), Positives = 92/240 (38%), Gaps = 53/240 (22%)
Query: 23 TLVLAHGFGGDQSIWDKITPVLSQHYRVLAFDWLFSGA---ILNKDHQSLYNPVKYSSYE 79
+VL G GG S W VL Q Y+V+ +D +G L +D+ S
Sbjct: 17 VVVLISGLGGSGSYWLPQLAVLEQEYQVVCYDQRGTGNNPDTLAEDY----------SIA 66
Query: 80 AFADDLITLLEENDLKSTLFIGHSMSGMIGCIASVKKPELFKRLILIGTSPRYINTDD-- 137
A +L L ++ +GH++ ++G ++ P LI + R IN
Sbjct: 67 QXAAELHQALVAAGIEHYAVVGHALGALVGXQLALDYPASVTVLISVNGWLR-INAHTRR 125
Query: 138 ---------YEGGFEPSDIENLISNVETN-----YASW-ASSFPRLVVDTKDAPSVEKFE 182
Y GG + + VE A W A+ PRL + +DA ++ F+
Sbjct: 126 CFQVRERLLYSGGAQ--------AWVEAQPLFLYPADWXAARAPRL--EAEDALALAHFQ 175
Query: 183 ---NCLKRMRHEFALPLAKTVFYSDEREILDKVETPCTIFQPSNDAVVPNSVAYYMQEKM 239
N L+R+ + +D D++ P I S+D +VP + + + +
Sbjct: 176 GKNNLLRRL---------NALKRADFSHHADRIRCPVQIICASDDLLVPTACSSELHAAL 226
>pdb|3PE6|A Chain A, Crystal Structure Of A Soluble Form Of Human Mgll In
Complex With An Inhibitor
Length = 303
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 60/268 (22%), Positives = 109/268 (40%), Gaps = 37/268 (13%)
Query: 18 GSGKETLVLAHGFGGDQSIWDKITPVLSQHYRVLAFDWLFSGAILNKDH----QSLYNPV 73
G+ K + ++HG G ++++ +L + D L + DH QS +
Sbjct: 39 GTPKALIFVSHGAGEHSGRYEELARML------MGLDLL----VFAHDHVGHGQSEGERM 88
Query: 74 KYSSYEAFADDLITLLE--ENDLKS--TLFIGHSMSGMIGCIASVKKPELFKRLILIGTS 129
S + F D++ ++ + D +GHSM G I + + ++P F ++LI S
Sbjct: 89 VVSDFHVFVRDVLQHVDSMQKDYPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLI--S 146
Query: 130 PRYINTDDYEGGFEPSDIENLISNVETNYASWASSFP-RLVVDTKDAPSVEKFEN----C 184
P + + F + L + V + SS P V +++ V+ + + C
Sbjct: 147 PLVLANPESATTF-----KVLAAKVLNSVLPNLSSGPIDSSVLSRNKTEVDIYNSDPLIC 201
Query: 185 LKRMRHEFALPLAKTVFYSDEREILDKVETPCTIFQPSNDAVVPNSVAYYMQEKMKGK-S 243
++ F + L V S L K+ P + Q S D + + AY + E K +
Sbjct: 202 RAGLKVCFGIQLLNAV--SRVERALPKLTVPFLLLQGSADRLCDSKGAYLLMELAKSQDK 259
Query: 244 TVEIIEADGHFPQLTAHLQLIDVLNKVL 271
T++I E H H +L +V N V
Sbjct: 260 TLKIYEGAYH----VLHKELPEVTNSVF 283
>pdb|3HJU|A Chain A, Crystal Structure Of Human Monoglyceride Lipase
pdb|3HJU|B Chain B, Crystal Structure Of Human Monoglyceride Lipase
Length = 342
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 59/279 (21%), Positives = 108/279 (38%), Gaps = 53/279 (18%)
Query: 15 KIIGSGKETLVLAHGFGGDQSIWDKITPVLSQHYRVLAFDWLFSGAILNKDH----QSLY 70
K G+ K + ++HG G ++++ +L + D L + DH QS
Sbjct: 54 KPTGTPKALIFVSHGAGEHSGRYEELARML------MGLDLL----VFAHDHVGHGQSEG 103
Query: 71 NPVKYSSYEAFADDLITLLE--ENDLKS--TLFIGHSMSGMIGCIASVKKPELFKRLILI 126
+ S + F D++ ++ + D +GHSM G I + + ++P F ++LI
Sbjct: 104 ERMVVSDFHVFVRDVLQHVDSMQKDYPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLI 163
Query: 127 GTSPRYINTDDYEGGFE--PSDIENLISNVETNYASWASSFPRLVVDTKDAPSVEKFEN- 183
SP + + F+ + + NL+ P L + D+ + + +
Sbjct: 164 --SPLVLANPESATTFKVLAAKVLNLV-------------LPNLSLGPIDSSVLSRNKTE 208
Query: 184 ----------CLKRMRHEFALPLAKTVFYSDEREILDKVETPCTIFQPSNDAVVPNSVAY 233
C ++ F + L V S L K+ P + Q S D + + AY
Sbjct: 209 VDIYNSDPLICRAGLKVCFGIQLLNAV--SRVERALPKLTVPFLLLQGSADRLCDSKGAY 266
Query: 234 YMQEKMKGK-STVEIIEADGHFPQLTAHLQLIDVLNKVL 271
+ E K + T++I E H H +L +V N V
Sbjct: 267 LLMELAKSQDKTLKIYEGAYH----VLHKELPEVTNSVF 301
>pdb|3JWE|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
pdb|3JWE|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
Length = 320
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 59/278 (21%), Positives = 108/278 (38%), Gaps = 53/278 (19%)
Query: 15 KIIGSGKETLVLAHGFGGDQSIWDKITPVLSQHYRVLAFDWLFSGAILNKDH----QSLY 70
K G+ K + ++HG G ++++ +L + D L + DH QS
Sbjct: 53 KPTGTPKALIFVSHGAGEHSGRYEELARML------MGLDLL----VFAHDHVGHGQSEG 102
Query: 71 NPVKYSSYEAFADDLITLLE--ENDLKS--TLFIGHSMSGMIGCIASVKKPELFKRLILI 126
+ S + F D++ ++ + D +GHSM G I + + ++P F ++LI
Sbjct: 103 ERMVVSDFHVFVRDVLQHVDSMQKDYPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLI 162
Query: 127 GTSPRYINTDDYEGGFE--PSDIENLISNVETNYASWASSFPRLVVDTKDAPSVEKFEN- 183
SP + + F+ + + NL+ P L + D+ + + +
Sbjct: 163 --SPLVLANPESATTFKVLAAKVLNLV-------------LPNLSLGPIDSSVLSRNKTE 207
Query: 184 ----------CLKRMRHEFALPLAKTVFYSDEREILDKVETPCTIFQPSNDAVVPNSVAY 233
C ++ F + L V S L K+ P + Q S D + + AY
Sbjct: 208 VDIYNSDPLICRAGLKVCFGIQLLNAV--SRVERALPKLTVPFLLLQGSADRLCDSKGAY 265
Query: 234 YMQEKMKGK-STVEIIEADGHFPQLTAHLQLIDVLNKV 270
+ E K + T++I E H H +L +V N V
Sbjct: 266 LLMELAKSQDKTLKIYEGAYH----VLHKELPEVTNSV 299
>pdb|3BF7|A Chain A, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
pdb|3BF7|B Chain B, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
Length = 255
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%)
Query: 77 SYEAFADDLITLLEENDLKSTLFIGHSMSGMIGCIASVKKPELFKRLILIGTSP 130
+Y A A DL+ L+ + FIGHSM G + P+ +L+ I +P
Sbjct: 63 NYPAMAQDLVDTLDALQIDKATFIGHSMGGKAVMALTALAPDRIDKLVAIDIAP 116
>pdb|3R3V|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnFLUOROACETATE
pdb|3R3V|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnFLUOROACETATE
pdb|3R3W|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnCHLOROACETATE
pdb|3R3W|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnCHLOROACETATE
pdb|3R3X|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnBROMOACETATE
pdb|3R3X|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnBROMOACETATE
pdb|3R40|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnAPO
pdb|3R40|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnAPO
Length = 306
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/124 (21%), Positives = 51/124 (41%), Gaps = 4/124 (3%)
Query: 9 SAAMNAKIIGSGKETLVLAHGFGGDQSIWDKITPVLSQHYRVLAFDWLFSGAILNKDHQS 68
S + A++ G G L+L HGF +W ++ P L++ ++V+ D G +
Sbjct: 22 SGRIFARVGGDGPPLLLL-HGFPQTHVMWHRVAPKLAERFKVIVADLPGYGWSDMPESDE 80
Query: 69 LYNPVKYSSYEAFADDLITLLEENDLKSTLFIGHSMSGMIGCIASVKKPELFKRLILIGT 128
+ P + A A LI +E+ GH+ + ++ P +L ++
Sbjct: 81 QHTPY---TKRAMAKQLIEAMEQLGHVHFALAGHNRGARVSYRLALDSPGRLSKLAVLDI 137
Query: 129 SPRY 132
P Y
Sbjct: 138 LPTY 141
>pdb|1EHY|A Chain A, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|B Chain B, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|C Chain C, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|D Chain D, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
Length = 294
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 18 GSGKETLVLAHGFGGDQSIWDKITPVLSQHYRVLAFDWLFSGAILNKDHQSLYNPVKYSS 77
G+G TL+L HG+ G W K+ L++HY V+ D G + + L + KYS
Sbjct: 27 GAGP-TLLLLHGWPGFWWEWSKVIGPLAEHYDVIVPDLRGFG---DSEKPDLNDLSKYSL 82
Query: 78 YEAFADDLITLLEENDLKSTLFIGHSMSGMI 108
+A ADD LL+ ++ +GH + ++
Sbjct: 83 DKA-ADDQAALLDALGIEKAYVVGHDFAAIV 112
>pdb|3R41|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnAPO
pdb|3R41|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnAPO
Length = 306
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/124 (21%), Positives = 50/124 (40%), Gaps = 4/124 (3%)
Query: 9 SAAMNAKIIGSGKETLVLAHGFGGDQSIWDKITPVLSQHYRVLAFDWLFSGAILNKDHQS 68
S + A++ G G L+L HGF +W ++ P L++ ++V+ D G +
Sbjct: 22 SGRIFARVGGDGPPLLLL-HGFPQTHVMWHRVAPKLAERFKVIVADLPGYGWSDMPESDE 80
Query: 69 LYNPVKYSSYEAFADDLITLLEENDLKSTLFIGHSMSGMIGCIASVKKPELFKRLILIGT 128
+ P + A A LI +E+ GH + ++ P +L ++
Sbjct: 81 QHTPY---TKRAMAKQLIEAMEQLGHVHFALAGHDRGARVSYRLALDSPGRLSKLAVLDI 137
Query: 129 SPRY 132
P Y
Sbjct: 138 LPTY 141
>pdb|3R3U|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|C Chain C, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|D Chain D, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3Z|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|C Chain C, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|D Chain D, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
Length = 306
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/124 (21%), Positives = 50/124 (40%), Gaps = 4/124 (3%)
Query: 9 SAAMNAKIIGSGKETLVLAHGFGGDQSIWDKITPVLSQHYRVLAFDWLFSGAILNKDHQS 68
S + A++ G G L+L HGF +W ++ P L++ ++V+ D G +
Sbjct: 22 SGRIFARVGGDGPPLLLL-HGFPQTHVMWHRVAPKLAERFKVIVADLPGYGWSDMPESDE 80
Query: 69 LYNPVKYSSYEAFADDLITLLEENDLKSTLFIGHSMSGMIGCIASVKKPELFKRLILIGT 128
+ P + A A LI +E+ GH + ++ P +L ++
Sbjct: 81 QHTPY---TKRAMAKQLIEAMEQLGHVHFALAGHDRGARVSYRLALDSPGRLSKLAVLDI 137
Query: 129 SPRY 132
P Y
Sbjct: 138 LPTY 141
>pdb|3R3Y|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnFLUOROACETATE
pdb|3R3Y|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnFLUOROACETATE
Length = 306
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/124 (21%), Positives = 50/124 (40%), Gaps = 4/124 (3%)
Query: 9 SAAMNAKIIGSGKETLVLAHGFGGDQSIWDKITPVLSQHYRVLAFDWLFSGAILNKDHQS 68
S + A++ G G L+L HGF +W ++ P L++ ++V+ D G +
Sbjct: 22 SGRIFARVGGDGPPLLLL-HGFPQTHVMWHRVAPKLAERFKVIVADLPGYGWSDMPESDE 80
Query: 69 LYNPVKYSSYEAFADDLITLLEENDLKSTLFIGHSMSGMIGCIASVKKPELFKRLILIGT 128
+ P + A A LI +E+ GH + ++ P +L ++
Sbjct: 81 QHTPY---TKRAMAKQLIEAMEQLGHVHFALAGHXRGARVSYRLALDSPGRLSKLAVLDI 137
Query: 129 SPRY 132
P Y
Sbjct: 138 LPTY 141
>pdb|3E3A|A Chain A, The Structure Of Rv0554 From Mycobacterium Tuberculosis
pdb|3E3A|B Chain B, The Structure Of Rv0554 From Mycobacterium Tuberculosis
pdb|3HSS|A Chain A, A Higher Resolution Structure Of Rv0554 From Mycobacterium
Tuberculosis Complexed With Malonic Acid
pdb|3HSS|B Chain B, A Higher Resolution Structure Of Rv0554 From Mycobacterium
Tuberculosis Complexed With Malonic Acid
pdb|3HYS|A Chain A, Structure Of Rv0554 From Mycobacterium Tuberculosis
Complexed With Malonic Acid
pdb|3HYS|B Chain B, Structure Of Rv0554 From Mycobacterium Tuberculosis
Complexed With Malonic Acid
pdb|3HZO|A Chain A, Rv0554 From Mycobacterium Tuberculosis - The Structure
Solved From The Tetragonal Crystal Form
pdb|3HZO|B Chain B, Rv0554 From Mycobacterium Tuberculosis - The Structure
Solved From The Tetragonal Crystal Form
Length = 293
Score = 35.4 bits (80), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 45/116 (38%), Gaps = 12/116 (10%)
Query: 18 GSGKETLVLAHGFGGDQSIWD--KITPVLSQHYRVLAFDWLFSGAILNKDHQSLYNPVKY 75
G+G + +A G GG W ++ L+ YR + FD GA N +
Sbjct: 41 GTGDPVVFIA-GRGGAGRTWHPHQVPAFLAAGYRCITFDNRGIGATENAEG--------- 90
Query: 76 SSYEAFADDLITLLEENDLKSTLFIGHSMSGMIGCIASVKKPELFKRLILIGTSPR 131
+ + D L+E D+ +G SM I V PEL +L+ T R
Sbjct: 91 FTTQTMVADTAALIETLDIAPARVVGVSMGAFIAQELMVVAPELVSSAVLMATRGR 146
>pdb|4F0J|A Chain A, Crystal Structure Of A Probable Hydrolytic Enzyme (Pa3053)
From Pseudomonas Aeruginosa Pao1 At 1.50 A Resolution
Length = 315
Score = 35.4 bits (80), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 10/107 (9%)
Query: 22 ETLVLAHGFGGDQSIWDKITPVLSQH-YRVLAFDWLFSGAILNKDHQSLYNPVKYS-SYE 79
T++L HG W++ VL+ YRV+A D + G + P Y S++
Sbjct: 47 RTILLXHGKNFCAGTWERTIDVLADAGYRVIAVDQV--GFCKSS------KPAHYQYSFQ 98
Query: 80 AFADDLITLLEENDLKSTLFIGHSMSGMIGCIASVKKPELFKRLILI 126
A + LLE + IGHS G + ++ P +RL+L+
Sbjct: 99 QLAANTHALLERLGVARASVIGHSXGGXLATRYALLYPRQVERLVLV 145
>pdb|4B9A|A Chain A, Structure Of A Putative Epoxide Hydrolase From Pseudomonas
Aeruginosa.
pdb|4B9E|A Chain A, Structure Of A Putative Epoxide Hydrolase From Pseudomonas
Aeruginosa, With Bound Mfa
Length = 301
Score = 35.0 bits (79), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 6/122 (4%)
Query: 9 SAAMNAKIIGSGKETLVLAHGFGGDQSIWDKITPVLSQHYRVLAFDWLFSGAILNKDHQS 68
+A + + GSG L+L HG+ W +I P L++ Y V+ D G D +
Sbjct: 20 AARLRVAVKGSGPPLLLL-HGYPQTHLAWHRIAPRLAEDYSVVLADLRGYGESRALDEEG 78
Query: 69 LYNPVKYSSYEAFADDLITLLEENDLKSTLFIGHSMSGMIGCIASVKKPELFKRLILIGT 128
YS A A D + + + + IGH +G ++ P+ + +
Sbjct: 79 ----ADYSK-AALARDQLETMGQLGFERFAVIGHDRGARVGYRLALDHPQAVAAFVSLTV 133
Query: 129 SP 130
P
Sbjct: 134 VP 135
>pdb|4G5X|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
pdb|4G5X|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
pdb|4G9E|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
Complexed With N-butanoyl Homoserine
pdb|4G9E|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
Complexed With N-butanoyl Homoserine
Length = 279
Score = 35.0 bits (79), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 52/108 (48%), Gaps = 7/108 (6%)
Query: 24 LVLAHGFGGDQSIW-DKITPVLSQHYRVLAFDWLFSGAILNKDHQSLYNPVKYSSYEAFA 82
L++ HG +I+ ++ + + +RV+A D G + +P + S E +A
Sbjct: 27 LLMIHGNSSSGAIFAPQLEGEIGKKWRVIAPDLPGHGKSTDA-----IDPDRSYSMEGYA 81
Query: 83 DDLITLLEENDLKSTLFIGHSMSGMIGCIASVKKPELFKRLILIGTSP 130
D + ++++ + + G S+ G IG + PE+ + L++ GT P
Sbjct: 82 DAMTEVMQQLGIADAVVFGWSLGGHIGIEMIARYPEM-RGLMITGTPP 128
>pdb|4G8C|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant Complexed With N-hexanoyl Homoserine
pdb|4G8C|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant Complexed With N-hexanoyl Homoserine
pdb|4G9G|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant
pdb|4G9G|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant
Length = 279
Score = 34.7 bits (78), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 52/108 (48%), Gaps = 7/108 (6%)
Query: 24 LVLAHGFGGDQSIW-DKITPVLSQHYRVLAFDWLFSGAILNKDHQSLYNPVKYSSYEAFA 82
L++ HG +I+ ++ + + +RV+A D G + +P + S E +A
Sbjct: 27 LLMIHGNSSSGAIFAPQLEGEIGKKWRVIAPDLPGHGKSTDA-----IDPDRSYSMEGYA 81
Query: 83 DDLITLLEENDLKSTLFIGHSMSGMIGCIASVKKPELFKRLILIGTSP 130
D + ++++ + + G S+ G IG + PE+ + L++ GT P
Sbjct: 82 DAMTEVMQQLGIADAVVFGWSLGGHIGIEMIARYPEM-RGLMITGTPP 128
>pdb|1BEE|A Chain A, Haloalkane Dehalogenase Mutant With Trp 175 Replaced By
Tyr
pdb|1BEZ|A Chain A, Haloalkane Dehalogenase Mutant With Trp 175 Replaced By
Tyr At Ph 5
Length = 310
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 48/108 (44%), Gaps = 7/108 (6%)
Query: 20 GKETLVLAHGFGGDQSIWDKITPVLSQH-YRVLAFDWLFSGAILNKDHQSLYNPVKYSSY 78
++ + HG ++ K+ PV ++ RV+A D+ G + Y ++
Sbjct: 46 AEDVFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPVDEEDY------TF 99
Query: 79 EAFADDLITLLEENDLKSTLFIGHSMSGMIGCIASVKKPELFKRLILI 126
E + L+ L+E DL++ + G +G + P FKRLI++
Sbjct: 100 EFHRNFLLALIERLDLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIM 147
>pdb|1EDB|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|1EDD|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|1EDE|A Chain A, Refined X-Ray Structures Of Haloalkane Dehalogenase At Ph
6.2 And Ph 8.2 And Implications For The Reaction
Mechanism
pdb|2DHC|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
pdb|2DHE|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
pdb|2EDA|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|2EDC|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|2HAD|A Chain A, Crystal Structure Of Haloalkane Dehalogenase: An Enzyme To
Detoxify Halogenated Alkanes
pdb|2PKY|X Chain X, The Effect Of Deuteration On Protein Structure A High
Resolution Comparison Of Hydrogenous And Perdeuterated
Haloalkane Dehalogenase
pdb|2YXP|X Chain X, The Effect Of Deuteration On Protein Structure A High
Resolution Comparison Of Hydrogenous And Perdeuterated
Haloalkane Dehalogenase
Length = 310
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 48/108 (44%), Gaps = 7/108 (6%)
Query: 20 GKETLVLAHGFGGDQSIWDKITPVLSQH-YRVLAFDWLFSGAILNKDHQSLYNPVKYSSY 78
++ + HG ++ K+ PV ++ RV+A D+ G + Y ++
Sbjct: 46 AEDVFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPVDEEDY------TF 99
Query: 79 EAFADDLITLLEENDLKSTLFIGHSMSGMIGCIASVKKPELFKRLILI 126
E + L+ L+E DL++ + G +G + P FKRLI++
Sbjct: 100 EFHRNFLLALIERLDLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIM 147
>pdb|1CIJ|A Chain A, Haloalkane Dehalogenase Soaked With High Concentration Of
Bromide
pdb|1BE0|A Chain A, Haloalkane Dehalogenase At Ph 5.0 Containing Acetic Acid
Length = 310
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 48/108 (44%), Gaps = 7/108 (6%)
Query: 20 GKETLVLAHGFGGDQSIWDKITPVLSQH-YRVLAFDWLFSGAILNKDHQSLYNPVKYSSY 78
++ + HG ++ K+ PV ++ RV+A D+ G + Y ++
Sbjct: 46 AEDVFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPVDEEDY------TF 99
Query: 79 EAFADDLITLLEENDLKSTLFIGHSMSGMIGCIASVKKPELFKRLILI 126
E + L+ L+E DL++ + G +G + P FKRLI++
Sbjct: 100 EFHRNFLLALIERLDLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIM 147
>pdb|2DHD|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
Length = 310
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 48/108 (44%), Gaps = 7/108 (6%)
Query: 20 GKETLVLAHGFGGDQSIWDKITPVLSQH-YRVLAFDWLFSGAILNKDHQSLYNPVKYSSY 78
++ + HG ++ K+ PV ++ RV+A D+ G + Y ++
Sbjct: 46 AEDVFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPVDEEDY------TF 99
Query: 79 EAFADDLITLLEENDLKSTLFIGHSMSGMIGCIASVKKPELFKRLILI 126
E + L+ L+E DL++ + G +G + P FKRLI++
Sbjct: 100 EFHRNFLLALIERLDLRNITLVVQXWGGFLGLTLPMADPSRFKRLIIM 147
>pdb|1B6G|A Chain A, Haloalkane Dehalogenase At Ph 5.0 Containing Chloride
Length = 310
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 48/108 (44%), Gaps = 7/108 (6%)
Query: 20 GKETLVLAHGFGGDQSIWDKITPVLSQH-YRVLAFDWLFSGAILNKDHQSLYNPVKYSSY 78
++ + HG ++ K+ PV ++ RV+A D+ G + Y ++
Sbjct: 46 AEDVFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPVDEEDY------TF 99
Query: 79 EAFADDLITLLEENDLKSTLFIGHSMSGMIGCIASVKKPELFKRLILI 126
E + L+ L+E DL++ + G +G + P FKRLI++
Sbjct: 100 EFHRNFLLALIERLDLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIM 147
>pdb|1HDE|A Chain A, Haloalkane Dehalogenase Mutant With Phe 172 Replaced With
Trp
pdb|1HDE|B Chain B, Haloalkane Dehalogenase Mutant With Phe 172 Replaced With
Trp
Length = 310
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 48/108 (44%), Gaps = 7/108 (6%)
Query: 20 GKETLVLAHGFGGDQSIWDKITPVLSQH-YRVLAFDWLFSGAILNKDHQSLYNPVKYSSY 78
++ + HG ++ K+ PV ++ RV+A D+ G + Y ++
Sbjct: 46 AEDVFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPVDEEDY------TF 99
Query: 79 EAFADDLITLLEENDLKSTLFIGHSMSGMIGCIASVKKPELFKRLILI 126
E + L+ L+E DL++ + G +G + P FKRLI++
Sbjct: 100 EFHRNFLLALIERLDLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIM 147
>pdb|4G8B|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant Complexed With N-hexanoyl Homoserine
Lactone
pdb|4G8B|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant Complexed With N-hexanoyl Homoserine
Lactone
pdb|4G8D|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant
pdb|4G8D|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant
Length = 279
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 51/108 (47%), Gaps = 7/108 (6%)
Query: 24 LVLAHGFGGDQSIW-DKITPVLSQHYRVLAFDWLFSGAILNKDHQSLYNPVKYSSYEAFA 82
L++ HG +I+ ++ + + +RV+A D G + +P + S E +A
Sbjct: 27 LLMIHGNSSSGAIFAPQLEGEIGKKWRVIAPDLPGHGKSTDA-----IDPDRSYSMEGYA 81
Query: 83 DDLITLLEENDLKSTLFIGHSMSGMIGCIASVKKPELFKRLILIGTSP 130
D + ++++ + + G + G IG + PE+ + L++ GT P
Sbjct: 82 DAMTEVMQQLGIADAVVFGWGLGGHIGIEMIARYPEM-RGLMITGTPP 128
>pdb|4DGQ|A Chain A, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
pdb|4DGQ|B Chain B, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
pdb|4DGQ|C Chain C, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
Length = 280
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/174 (17%), Positives = 69/174 (39%), Gaps = 17/174 (9%)
Query: 79 EAFADDLITLLEENDLKSTLFIGHSMSG--MIGCIASVKKPELFKRLILIGTSPRYINTD 136
+ +ADD ++E+ + +GHS G ++ IA + + K +++ P + T
Sbjct: 77 DHYADDAAAVVEKLGTHGAMHVGHSTGGGEVVRYIARHGERNVSKAVLISSVPPLMVKTS 136
Query: 137 DYEGGFEPSDIENLISNVETNYASWASSFPRLVVDTKDAPSVEKFENCL----------- 185
G S ++ ++V N A + P + P + E +
Sbjct: 137 SNPNGTPKSVFDDFQAHVAANRAQFYLDVPAGPFYGYNRPGAKPSEGVIYNWWRQGMMGS 196
Query: 186 KRMRHEFALPLAKTVFYSDEREILDKVETPCTIFQPSNDAVVPNSVAYYMQEKM 239
+ +++ + ++T F +D L + P + +D VVP + + + K+
Sbjct: 197 TKAQYDGIVAFSQTDFTND----LKGITIPVLVIHGDDDQVVPYADSGVLSAKL 246
>pdb|3P2M|A Chain A, Crystal Structure Of A Novel Esterase Rv0045c From
Mycobacterium Tuberculosis
Length = 330
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 51/270 (18%), Positives = 98/270 (36%), Gaps = 18/270 (6%)
Query: 9 SAAMNAKIIGSGKETLVLAHGFGGDQSIWDKITPVLSQHYRVLAFDWLFSGAILNKDHQS 68
+ A++A G ++ HG G + WD + L + LA D + H +
Sbjct: 69 AGAISALRWGGSAPRVIFLHGGGQNAHTWDTVIVGLGE--PALAVD------LPGHGHSA 120
Query: 69 LYNPVKYSSYEAFADDLITLLEENDLKSTLFIGHSMSGMIGCIASVKKPELFKRLILIGT 128
YS + ++ L +L E + +G S+ G+ + P+L L+L+
Sbjct: 121 WREDGNYSP-QLNSETLAPVLRELAPGAEFVVGMSLGGLTAIRLAAMAPDLVGELVLVDV 179
Query: 129 SPRYINTDDYEGGFEPSDIENLISNVETNYASWASSFPRLVVDT--KDAPSVEK--FENC 184
+P + E E L+ E + S+ + + +D S+ + F N
Sbjct: 180 TPSALQR-HAELTAEQRGTVALMHG-EREFPSFQAMLDLTIAAAPHRDVKSLRRGVFHNS 237
Query: 185 LKRMRHEFALPLAKTVFYSDEREILDKVE---TPCTIFQPSNDAVVPNSVAYYMQEKMKG 241
+ + + D + D V+ P T+ + + V + + +
Sbjct: 238 RRLDNGNWVWRYDAIRTFGDFAGLWDDVDALSAPITLVRGGSSGFVTDQDTAELHRRATH 297
Query: 242 KSTVEIIEADGHFPQLTAHLQLIDVLNKVL 271
V I+E GH Q LI+++ VL
Sbjct: 298 FRGVHIVEKSGHSVQSDQPRALIEIVRGVL 327
>pdb|2Y6U|A Chain A, Peroxisomal Alpha-Beta-Hydrolase Lpx1 (Yor084w) From
Saccharomyces Cerevisiae (Crystal Form Ii)
pdb|2Y6V|A Chain A, Peroxisomal Alpha-Beta-Hydrolase Lpx1 (Yor084w) From
Saccharomyces Cerevisiae (Crystal Form I)
pdb|2Y6V|B Chain B, Peroxisomal Alpha-Beta-Hydrolase Lpx1 (Yor084w) From
Saccharomyces Cerevisiae (Crystal Form I)
pdb|2Y6V|C Chain C, Peroxisomal Alpha-Beta-Hydrolase Lpx1 (Yor084w) From
Saccharomyces Cerevisiae (Crystal Form I)
Length = 398
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 53/133 (39%), Gaps = 19/133 (14%)
Query: 9 SAAMNAKIIGSGKETLVLAHGFGGDQSIWDKITPVL-----SQHY---RVLAFDWLFSG- 59
SA + + + LV HG G + +W+ P L +Y +VL D + G
Sbjct: 40 SAERQRRSRTATRLNLVFLHGSGMSKVVWEYYLPRLVAADAEGNYAIDKVLLIDQVNHGD 99
Query: 60 -AILNKDHQSLYNPVKYSSYEAFADDL-ITLLEENDLKS----TLFIGHSMSGMIGCIAS 113
A+ N+ ++ + D L I E + S + IGHSM G
Sbjct: 100 SAVRNRGRLG----TNFNWIDGARDVLKIATXELGSIDSHPALNVVIGHSMGGFQALACD 155
Query: 114 VKKPELFKRLILI 126
V +P LF LILI
Sbjct: 156 VLQPNLFHLLILI 168
>pdb|2XT0|A Chain A, Dehalogenase Dppa From Plesiocystis Pacifica Sir-I
Length = 297
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 51/259 (19%), Positives = 94/259 (36%), Gaps = 46/259 (17%)
Query: 21 KETLVLAHGFGGDQSIWDKITPVLSQ-HYRVLAFDWLFSGAILNKDHQSLYNPVKYSSYE 79
+ T + HG ++ K+ PV + RV+A D G ++Y ++
Sbjct: 46 EHTFLCLHGEPSWSFLYRKMLPVFTAAGGRVVAPDLFGFGRSDKPTDDAVY------TFG 99
Query: 80 AFADDLITLLEENDLKSTLFIGHSMSGMIGCIASVKKPELFKRLIL------IGTSP--R 131
L+ L+ L+ + G++G V +P+L RLI+ +G SP
Sbjct: 100 FHRRSLLAFLDALQLERVTLVCQDWGGILGLTLPVDRPQLVDRLIVMNTALAVGLSPGKG 159
Query: 132 YINTDDYEGGFEPSDIENLISNV-----ETNYASWASSFP---------RLVVDTKDAPS 177
+ + D+ D+ L+ + A++ + FP R P
Sbjct: 160 FESWRDFVANSPDLDVGKLMQRAIPGITDAEVAAYDAPFPGPEFKAGVRRFPAIVPITPD 219
Query: 178 VEKFENCLKRMRHEFALPLAKTVFYSDEREILDKVETPCTIFQPSNDAVVPNSVAYYMQE 237
+E E + M F+S + P + + D V+ V +++
Sbjct: 220 MEGAEIGRQAMS-----------FWSTQ------WSGPTFMAVGAQDPVLGPEVMGMLRQ 262
Query: 238 KMKGKSTVEIIEADGHFPQ 256
++G I+EA GHF Q
Sbjct: 263 AIRGCPEPMIVEAGGHFVQ 281
>pdb|2XMZ|A Chain A, Structure Of Menh From S. Aureus
Length = 269
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 41/109 (37%), Gaps = 7/109 (6%)
Query: 22 ETLVLAHGFGGDQSIWDKITPVLSQHYRVLAFDWLFSGAILNKDHQSLYNPVKYSSYEAF 81
+ LV HGF D + + +Y V+ D G +D S+ +
Sbjct: 17 QVLVFLHGFLSDSRTYHNHIEKFTDNYHVITIDLPGHG----EDQSSMDETWNFDYITTL 72
Query: 82 ADDLITLLEENDLKSTLFIGHSMSGMIGCIASVKKPELFKRLILIGTSP 130
D +L++ KS G+SM G + ++ LIL TSP
Sbjct: 73 LD---RILDKYKDKSITLFGYSMGGRVALYYAINGHIPISNLILESTSP 118
>pdb|3BH1|A Chain A, Crystal Structure Of Protein Dip2346 From Corynebacterium
Diphtheriae
pdb|3BH1|B Chain B, Crystal Structure Of Protein Dip2346 From Corynebacterium
Diphtheriae
pdb|3BH1|C Chain C, Crystal Structure Of Protein Dip2346 From Corynebacterium
Diphtheriae
pdb|3BH1|D Chain D, Crystal Structure Of Protein Dip2346 From Corynebacterium
Diphtheriae
Length = 507
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 144 PSDIENLISNVETNYASWASSFPRLVVDTKDAPSVEKFENCLKRMRHE 191
P+D++ ++S+ +A + LVV T P K CL ++ HE
Sbjct: 151 PTDMDRIVSDEGFGLNEYAETTRDLVVVTAPGPGSGKLATCLSQVYHE 198
>pdb|1C3X|A Chain A, Purine Nucleoside Phosphorylase From Cellulomonas Sp. In
Complex With 8-Iodo-Guanine
pdb|1C3X|B Chain B, Purine Nucleoside Phosphorylase From Cellulomonas Sp. In
Complex With 8-Iodo-Guanine
pdb|1C3X|C Chain C, Purine Nucleoside Phosphorylase From Cellulomonas Sp. In
Complex With 8-Iodo-Guanine
pdb|1QE5|A Chain A, Purine Nucleoside Phosphorylase From Cellulomonas Sp. In
Complex With Phosphate
pdb|1QE5|B Chain B, Purine Nucleoside Phosphorylase From Cellulomonas Sp. In
Complex With Phosphate
pdb|1QE5|C Chain C, Purine Nucleoside Phosphorylase From Cellulomonas Sp. In
Complex With Phosphate
Length = 266
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 19 SGKETLVLAHGFGGDQSIWDKITPV-LSQHYRVLA 52
+G ETL+L +G GG W TPV LS H + A
Sbjct: 109 TGAETLILTNGCGGLNQEWGAGTPVLLSDHINLTA 143
>pdb|2DKA|A Chain A, Crystal Structure Of N-Acetylglucosamine-Phosphate Mutase,
A Member Of The Alpha-D-Phosphohexomutase Superfamily,
In The Apo-Form
pdb|2DKA|B Chain B, Crystal Structure Of N-Acetylglucosamine-Phosphate Mutase,
A Member Of The Alpha-D-Phosphohexomutase Superfamily,
In The Apo-Form
pdb|2DKC|A Chain A, Crystal Structure Of N-Acetylglucosamine-Phosphate Mutase,
A Member Of The Alpha-D-Phosphohexomutase Superfamily,
In The Substrate Complex
pdb|2DKC|B Chain B, Crystal Structure Of N-Acetylglucosamine-Phosphate Mutase,
A Member Of The Alpha-D-Phosphohexomutase Superfamily,
In The Substrate Complex
pdb|2DKD|A Chain A, Crystal Structure Of N-Acetylglucosamine-Phosphate Mutase,
A Member Of The Alpha-D-Phosphohexomutase Superfamily,
In The Product Complex
pdb|2DKD|B Chain B, Crystal Structure Of N-Acetylglucosamine-Phosphate Mutase,
A Member Of The Alpha-D-Phosphohexomutase Superfamily,
In The Product Complex
Length = 544
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 60/149 (40%), Gaps = 35/149 (23%)
Query: 49 RVLAFDWLFSGAILNKDHQSLYNPVK------YSSYEAFADDLITLLEENDLKSTLFIGH 102
+L FD GA K +Q L VK Y+S++ AD LI + ND K L G
Sbjct: 257 NLLNFDC---GADYVKTNQKLPKNVKPVNNKLYASFDGDADRLICYYQNNDNKFKLLDGD 313
Query: 103 SMSGMIGCIASVKKPELFKRLILIGTSPRYINTDDYEGGFEPSDIENLISNVETNYASWA 162
+S + +LFK++ +P+ I I V+T YA+ +
Sbjct: 314 KLSTLFALFLQ----QLFKQI-------------------DPTKISLNIGVVQTAYANGS 350
Query: 163 SSFPRLVVDTKDAPSVEKFENCLKRMRHE 191
S+ + V D P V +K + HE
Sbjct: 351 ST--KYVEDVLKIP-VRCTPTGVKHLHHE 376
>pdb|3PI6|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
Length = 301
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 16 IIGSGKETLVLAHGFGGDQSIWDKITPVLSQHYRVLAFD 54
+ G ++L HGFG W ++ P L++ + V+A D
Sbjct: 25 VKGGQGPLVMLVHGFGQTWYEWHQLMPELAKRFTVIAPD 63
>pdb|3KDA|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
Length = 301
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 16 IIGSGKETLVLAHGFGGDQSIWDKITPVLSQHYRVLAFD 54
+ G ++L HGFG W ++ P L++ + V+A D
Sbjct: 25 VKGGQGPLVMLVHGFGQTWYEWHQLMPELAKRFTVIAPD 63
>pdb|3KD2|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif
Length = 301
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 16 IIGSGKETLVLAHGFGGDQSIWDKITPVLSQHYRVLAFD 54
+ G ++L HGFG W ++ P L++ + V+A D
Sbjct: 25 VKGGQGPLVMLVHGFGQTWYEWHQLMPELAKRFTVIAPD 63
>pdb|3V1K|A Chain A, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400.
pdb|3V1K|B Chain B, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400.
pdb|3V1N|A Chain A, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, After Exposure
To Its Substrate Hopda
Length = 286
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 18/117 (15%)
Query: 18 GSGKETLVLAHGFGGDQSIWDK----ITPVLSQHYRVLAFD---WLFSGAILNKDHQSLY 70
G+G ET+++ HG G W + P + YRV+ D + S A++ + + L
Sbjct: 31 GNG-ETVIMLHGGGPGAGGWSNYYRNVGPFVDAGYRVILKDSPGFNKSDAVVMDEQRGLV 89
Query: 71 NPVKYSSYEAFADDLITLLEENDLKSTLFIGHSMSGMIGCIASVKKPELFKRLILIG 127
N A + L++ D+ +G+SM G +++ P+ +LIL+G
Sbjct: 90 N----------ARAVKGLMDALDIDRAHLVGNSMGGATALNFALEYPDRIGKLILMG 136
>pdb|2OG1|A Chain A, Crystal Structure Of Bphd, A C-C Hydrolase From
Burkholderia Xenovorans Lb400
pdb|2OG1|B Chain B, Crystal Structure Of Bphd, A C-C Hydrolase From
Burkholderia Xenovorans Lb400
pdb|2PU5|A Chain A, Crystal Structure Of A C-C Bond Hydrolase, Bphd, From
Burkholderia Xenovorans Lb400
pdb|2PU5|B Chain B, Crystal Structure Of A C-C Bond Hydrolase, Bphd, From
Burkholderia Xenovorans Lb400
Length = 286
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 18/117 (15%)
Query: 18 GSGKETLVLAHGFGGDQSIWDK----ITPVLSQHYRVLAFD---WLFSGAILNKDHQSLY 70
G+G ET+++ HG G W + P + YRV+ D + S A++ + + L
Sbjct: 31 GNG-ETVIMLHGGGPGAGGWSNYYRNVGPFVDAGYRVILKDSPGFNKSDAVVMDEQRGLV 89
Query: 71 NPVKYSSYEAFADDLITLLEENDLKSTLFIGHSMSGMIGCIASVKKPELFKRLILIG 127
N A + L++ D+ +G+SM G +++ P+ +LIL+G
Sbjct: 90 N----------ARAVKGLMDALDIDRAHLVGNSMGGATALNFALEYPDRIGKLILMG 136
>pdb|3R1W|A Chain A, Crystal Structure Of A Carbonic Anhydrase From A Crude
Oil Degrading Psychrophilic Library
pdb|3R1W|B Chain B, Crystal Structure Of A Carbonic Anhydrase From A Crude
Oil Degrading Psychrophilic Library
pdb|3R1W|C Chain C, Crystal Structure Of A Carbonic Anhydrase From A Crude
Oil Degrading Psychrophilic Library
Length = 189
Score = 27.7 bits (60), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 6 QGLSAAMNAKIIGSGKETLVLAHGFGGDQSIWD-KITPVLSQHYRVLAFDWLFSGAILNK 64
QG+S + ++ ++ G D S+W + H R+ A + G++L+
Sbjct: 16 QGISPKLGERVFVDRSSVIIGDVELGDDCSVWPLAVIRGDMHHIRIGARTSVQDGSVLHI 75
Query: 65 DHQSLYNPVKY 75
H S YNP Y
Sbjct: 76 THASDYNPGGY 86
>pdb|1LSH|A Chain A, Lipid-Protein Interactions In Lipovitellin
Length = 1056
Score = 27.3 bits (59), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 144 PSDIENLISNVETNYASWASSFPRLVVDTKDA 175
P D+ L+S V TN A+ ++SF L D K A
Sbjct: 800 PMDLNLLVSGVTTNRANLSASFSSLPADMKLA 831
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,496,293
Number of Sequences: 62578
Number of extensions: 357178
Number of successful extensions: 1123
Number of sequences better than 100.0: 94
Number of HSP's better than 100.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 1031
Number of HSP's gapped (non-prelim): 100
length of query: 273
length of database: 14,973,337
effective HSP length: 97
effective length of query: 176
effective length of database: 8,903,271
effective search space: 1566975696
effective search space used: 1566975696
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)