BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024034
         (273 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1JGT|A Chain A, Crystal Structure Of Beta-Lactam Synthetase
 pdb|1JGT|B Chain B, Crystal Structure Of Beta-Lactam Synthetase
 pdb|1M1Z|A Chain A, Beta-Lactam Synthetase Apo Enzyme
 pdb|1M1Z|B Chain B, Beta-Lactam Synthetase Apo Enzyme
 pdb|1MB9|A Chain A, Beta-Lactam Synthetase Complexed With Atp
 pdb|1MB9|B Chain B, Beta-Lactam Synthetase Complexed With Atp
 pdb|1MBZ|A Chain A, Beta-Lactam Synthetase With Trapped Intermediate
 pdb|1MBZ|B Chain B, Beta-Lactam Synthetase With Trapped Intermediate
 pdb|1MC1|A Chain A, Beta-Lactam Synthetase With Product (Dgpc), Amp And Ppi
 pdb|1MC1|B Chain B, Beta-Lactam Synthetase With Product (Dgpc), Amp And Ppi
          Length = 513

 Score = 33.5 bits (75), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 69/170 (40%), Gaps = 25/170 (14%)

Query: 27  LQRALASPSQRRNLLQELFADIAL---EVDDR--ARDIILSGEEGGICPAEDGIDSRLCF 81
           L RAL  P +R  +L    ADI L     +DR  A D +L+ +        DG++     
Sbjct: 333 LYRALDGPERR--ILTGYGADIPLGGMHREDRLPALDTVLAHDMATF----DGLNEMSPV 386

Query: 82  YDVLADHYVRMPESGQRILDLIVQLWSQLFVSHIFALLFHKWIFEVQLNNDEVLLRYSSA 141
              LA H+   P   + +LDL+V L + L   H       KW+    + +         A
Sbjct: 387 LSTLAGHWTTHPYWDREVLDLLVSLEAGLKRRHG----RDKWVLRAAMAD---------A 433

Query: 142 LVQGATNVFWIDIQTNSRHFQSLFRYLLEEVALEPARLNKIPVQVQRDLF 191
           L     N   + +   S    S  R LL+    E  R+++   QV R+LF
Sbjct: 434 LPAETVNRPKLGVHEGSGTTSSFSRLLLDHGVAE-DRVHEAKRQVVRELF 482


>pdb|4HJH|A Chain A, Iodide Sad Phased Crystal Structure Of A
           Phosphoglucomutase From Brucella Melitensis Complexed
           With Glucose-6-Phosphate
 pdb|4HJH|B Chain B, Iodide Sad Phased Crystal Structure Of A
           Phosphoglucomutase From Brucella Melitensis Complexed
           With Glucose-6-Phosphate
          Length = 481

 Score = 28.1 bits (61), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 4/55 (7%)

Query: 137 RYSSALVQGATNVFWIDIQTNSRHFQSLFRYLLEEVALEPARLNK----IPVQVQ 187
           RY+  L +G+ N   + +  +S   + L  YLL  + +EP  L +    +PV  +
Sbjct: 166 RYAGFLGKGSLNGLRVGVYQHSSVARDLLMYLLTTLGVEPVALGRSDIFVPVDTE 220


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.139    0.399 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,214,957
Number of Sequences: 62578
Number of extensions: 281639
Number of successful extensions: 724
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 721
Number of HSP's gapped (non-prelim): 5
length of query: 273
length of database: 14,973,337
effective HSP length: 97
effective length of query: 176
effective length of database: 8,903,271
effective search space: 1566975696
effective search space used: 1566975696
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)