Query 024034
Match_columns 273
No_of_seqs 21 out of 23
Neff 3.1
Searched_HMMs 46136
Date Fri Mar 29 08:26:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024034.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024034hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00043 GST_C: Glutathione S- 47.2 31 0.00067 24.9 3.7 38 218-255 46-92 (95)
2 PF07216 LcrG: LcrG protein; 44.8 34 0.00074 28.3 3.8 39 23-63 10-48 (93)
3 cd03188 GST_C_Beta GST_C famil 42.0 46 0.001 24.6 4.0 41 218-258 61-108 (114)
4 PRK10647 ferric iron reductase 41.4 36 0.00077 32.1 4.0 69 81-154 69-142 (262)
5 PRK02866 cyanate hydratase; Va 37.0 76 0.0017 27.9 5.1 47 51-104 58-105 (147)
6 PF02338 OTU: OTU-like cystein 36.7 51 0.0011 25.5 3.6 33 75-108 2-38 (121)
7 COG4114 FhuF Uncharacterized F 31.1 83 0.0018 30.0 4.6 72 81-156 58-132 (251)
8 cd06845 Bcl-2_like Apoptosis r 28.5 60 0.0013 26.7 2.9 28 10-37 33-60 (144)
9 KOG2089 Metalloendopeptidase f 25.4 1.2E+02 0.0026 32.8 5.1 108 17-142 558-676 (718)
10 PF12491 ApoB100_C: Apolipopro 24.3 52 0.0011 25.2 1.7 44 81-127 9-52 (58)
11 PF11880 DUF3400: Domain of un 24.1 49 0.0011 24.2 1.4 28 224-254 8-35 (45)
12 cd03562 CID CID (CTD-Interacti 22.3 2.4E+02 0.0052 22.0 5.2 80 14-113 33-112 (114)
13 TIGR02573 LcrG_PcrG type III s 21.1 1.2E+02 0.0027 25.0 3.3 37 24-62 8-44 (90)
14 PF12464 Mac: Maltose acetyltr 21.1 96 0.0021 21.4 2.4 27 22-48 26-53 (55)
15 TIGR00865 bcl-2 Apoptosis regu 20.6 86 0.0019 28.8 2.6 26 12-37 67-92 (213)
16 PF12022 DUF3510: Domain of un 20.4 4.2E+02 0.0092 21.9 6.5 57 6-62 27-85 (125)
17 PF14497 GST_C_3: Glutathione 20.2 1.8E+02 0.0039 21.7 3.9 35 221-255 58-98 (99)
No 1
>PF00043 GST_C: Glutathione S-transferase, C-terminal domain; InterPro: IPR004046 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of cephalopods is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold. Each monomer is composed of a distinct N-terminal sub-domain, which adopts the thioredoxin fold, and a C-terminal all-helical sub-domain. This entry is the C-terminal domain.; PDB: 3UAP_A 3UAR_A 3QAV_A 3QAW_A 1Y6E_A 1U88_B 4AI6_B 1UA5_A 4AKH_A 3QMZ_S ....
Probab=47.17 E-value=31 Score=24.93 Aligned_cols=38 Identities=24% Similarity=0.383 Sum_probs=29.9
Q ss_pred CcccccC---CCccchHHHHHHHhhhhcchhH------HHHHHHHhh
Q 024034 218 PNAFLVG---GSADFFVIEVADQLQKLKVEPV------LLHYLSQIK 255 (273)
Q Consensus 218 ~~~Fl~g---g~aD~FV~ev~dqLqkiK~E~v------LLhYL~~~~ 255 (273)
.+.|++| +.||+.+-..++.+..+..... |.+|..+|.
T Consensus 46 ~~~~l~G~~~t~ADi~~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~ 92 (95)
T PF00043_consen 46 GGPYLVGDKLTIADIALFPMLDWLERLGPDFLFEKFPKLKKWYERMF 92 (95)
T ss_dssp TSSSSSBSS-CHHHHHHHHHHHHHHHHTTTTTHTTSHHHHHHHHHHH
T ss_pred CCCeeeccCCchhHHHHHHHHHHHHHhCCCcccccCHHHHHHHHHHH
Confidence 7899998 4999999999999887766554 666666654
No 2
>PF07216 LcrG: LcrG protein; InterPro: IPR009863 This family consists of several bacterial LcrG proteins. Yersiniae are equipped with the Yop virulon, an apparatus that allows extracellular bacteria to deliver toxic Yop proteins inside the host cell cytosol in order to sabotage the communication networks of the host cell or even to cause cell death. LcrG is a component of the Yop virulon involved in the regulation of secretion of the Yops []. This protein is found in type III secretion operons, along with LcrR, H and V. Also known as PcrG in Pseudomonas, the prot ein is believed to make a 1:1 complex with PcrV (LcrV) []. Mutations in LcrG cause premature secretion of effector proteins into the medium [].
Probab=44.81 E-value=34 Score=28.28 Aligned_cols=39 Identities=21% Similarity=0.439 Sum_probs=32.5
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHhhhhhhhchHHHHhhhcC
Q 024034 23 IEKKLQRALASPSQRRNLLQELFADIALEVDDRARDIILSG 63 (273)
Q Consensus 23 i~kkL~~Al~s~~qr~~ll~eLFaDial~vDdra~~~i~~~ 63 (273)
+.++-..||+...+|..|++|+.+.+ -|++.+-+.+++.
T Consensus 10 ti~~AE~AI~dsd~R~~llqEm~~gL--g~~p~ag~lLf~~ 48 (93)
T PF07216_consen 10 TIEQAELAIRDSDHRNDLLQEMLEGL--GLGPVAGELLFGG 48 (93)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhc--CCChhHHHHHhcC
Confidence 33456789999999999999999998 6778888877766
No 3
>cd03188 GST_C_Beta GST_C family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site for
Probab=42.00 E-value=46 Score=24.58 Aligned_cols=41 Identities=22% Similarity=0.415 Sum_probs=30.1
Q ss_pred CcccccC---CCccchHHHHHHHhhhhcch----hHHHHHHHHhhhhc
Q 024034 218 PNAFLVG---GSADFFVIEVADQLQKLKVE----PVLLHYLSQIKVLQ 258 (273)
Q Consensus 218 ~~~Fl~g---g~aD~FV~ev~dqLqkiK~E----~vLLhYL~~~~~lq 258 (273)
.+.|+.| +.+|+.+..++..+...... |.+-.|.++|.-..
T Consensus 61 ~~~~l~G~~~t~aDi~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p 108 (114)
T cd03188 61 GGPYLLGDRFSVADAYLFVVLRWAPGVGLDLSDWPNLAAYLARVAARP 108 (114)
T ss_pred CCCeeeCCCcchHHHHHHHHHHHHhhcCCChhhChHHHHHHHHHHhCH
Confidence 4678988 48999999888887655432 67888888876543
No 4
>PRK10647 ferric iron reductase involved in ferric hydroximate transport; Provisional
Probab=41.36 E-value=36 Score=32.13 Aligned_cols=69 Identities=25% Similarity=0.443 Sum_probs=42.5
Q ss_pred HHHHHHHHhhcCCcchhhHHHHHHHHhhhhhHHH-----HHHHHHHHHHhhHhcCCcchhhHhHHHHhhcccceeeeec
Q 024034 81 FYDVLADHYVRMPESGQRILDLIVQLWSQLFVSH-----IFALLFHKWIFEVQLNNDEVLLRYSSALVQGATNVFWIDI 154 (273)
Q Consensus 81 fYevLA~Yy~~vPe~~~~il~L~~qLWsq~~~~~-----IfalLF~~WLfE~~l~~~e~~lr~~n~lvqGAtNlFW~Di 154 (273)
.=+..+++|+..-+.+.+-..-+.++|+|-|++. +++++-+.+-+....++-.+.+.. +|--..||+|.
T Consensus 69 lL~~y~~~~~~~~~~~~~~~ral~SlWsk~Yf~ll~pp~l~a~l~~~~~L~l~~~~~~v~~~~-----~G~P~~~~~~~ 142 (262)
T PRK10647 69 LLAVYSDHIYRNQPTLKRENKPLYSLWAQWYIGLMVPPLMLALLTQPQALDVSPEHFHVEFHE-----TGRAACFWYDV 142 (262)
T ss_pred HHHHHHHHhcCCCcccCcchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccceEEEeCC-----CCCcceEEecc
Confidence 4445667777766667777888999999999887 344444443333323331111111 36777999999
No 5
>PRK02866 cyanate hydratase; Validated
Probab=37.04 E-value=76 Score=27.85 Aligned_cols=47 Identities=21% Similarity=0.318 Sum_probs=29.4
Q ss_pred hhchHHHHhhhcCCCCCCCCCcCCCCcchh-HHHHHHHHhhcCCcchhhHHHHHH
Q 024034 51 EVDDRARDIILSGEEGGICPAEDGIDSRLC-FYDVLADHYVRMPESGQRILDLIV 104 (273)
Q Consensus 51 ~vDdra~~~i~~~~~d~Is~~~~~~~~~~c-fYevLA~Yy~~vPe~~~~il~L~~ 104 (273)
.+|+.+..++..--.-+..+..--.||-+| |||++..| |..+-.||+
T Consensus 58 gL~~~~~~~l~~~P~rg~~~~~~ptdP~iYR~yE~v~vY-------G~~~K~~i~ 105 (147)
T PRK02866 58 GLDEDAVALLQEVPYRGSLPPAVPTDPLIYRFYEMVQVY-------GTTLKALIH 105 (147)
T ss_pred CCCHHHHHHHhcCCcCCCCCCCCCCCcHHHHHHHHHHHh-------hHHHHHHHH
Confidence 778887776654433332222223488999 99999988 455555554
No 6
>PF02338 OTU: OTU-like cysteine protease; InterPro: IPR003323 This is a group of proteins found primarily in viruses, eukaryotes and in the pathogenic bacterium Chlamydia pneumoniae. In viruses they are annotated as replicase or RNA-dependent RNA polymerase. The eukaryotic sequences are related to the Ovarian Tumour (OTU) gene in Drosophila, cezanne deubiquitinating peptidase and tumor necrosis factor, alpha-induced protein 3 (MEROPS peptidase family C64) and otubain 1 and otubain 2 (MEROPS peptidase family C65). None of these proteins has a known biochemical function but low sequence similarity with the polyprotein regions of arteriviruses, and conserved cysteine and histidine, and possibly the aspartate, residues suggests that those not yet recognised as peptidases could possess cysteine protease activity [].; PDB: 2VFJ_C 3DKB_F 3PHW_A 3PHU_B 3PHX_A 3BY4_A 3C0R_C 3PRM_C 3PRP_C 3ZRH_A ....
Probab=36.71 E-value=51 Score=25.49 Aligned_cols=33 Identities=15% Similarity=0.363 Sum_probs=28.5
Q ss_pred CCcchhHHHHHHHHhh----cCCcchhhHHHHHHHHhh
Q 024034 75 IDSRLCFYDVLADHYV----RMPESGQRILDLIVQLWS 108 (273)
Q Consensus 75 ~~~~~cfYevLA~Yy~----~vPe~~~~il~L~~qLWs 108 (273)
+||. |+|.-+|.-.. ...+..+.++..|++--.
T Consensus 2 gDGn-ClF~Avs~~l~~~~~~~~~~~~~lR~~~~~~l~ 38 (121)
T PF02338_consen 2 GDGN-CLFRAVSDQLYGDGGGSEDNHQELRKAVVDYLR 38 (121)
T ss_dssp SSTT-HHHHHHHHHHCTT-SSSTTTHHHHHHHHHHHHH
T ss_pred CCcc-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 5777 99999999999 889999999999976554
No 7
>COG4114 FhuF Uncharacterized Fe-S protein [General function prediction only]
Probab=31.06 E-value=83 Score=30.00 Aligned_cols=72 Identities=19% Similarity=0.344 Sum_probs=40.9
Q ss_pred HHHHHHHHhhc-CCcchhhHHHHHHHHhhhhhHHHHHHHHHHHHHhhHhcCCcchhhHhHHHHhhcccc--eeeeeccc
Q 024034 81 FYDVLADHYVR-MPESGQRILDLIVQLWSQLFVSHIFALLFHKWIFEVQLNNDEVLLRYSSALVQGATN--VFWIDIQT 156 (273)
Q Consensus 81 fYevLA~Yy~~-vPe~~~~il~L~~qLWsq~~~~~IfalLF~~WLfE~~l~~~e~~lr~~n~lvqGAtN--lFW~Diqs 156 (273)
--++-+||||+ +|..-+. .-..+||||-|++.+=-=+.+--++..+.=. ++-.|.-+.-+--+. .||.|+.-
T Consensus 58 l~~~y~dh~y~d~~~~pr~--k~laSlwSqwY~glmtpP~mlal~l~~qal~--~~~en~~v~fhetgr~~~f~~~~~~ 132 (251)
T COG4114 58 LLAVYSDHYYGDQPGMPRE--KALASLWSQWYFGLMTPPLMLALLLQEQALD--VSPENFHVEFHETGRPACFYVDVCE 132 (251)
T ss_pred HHHhhhhhhhccCCCCchH--HHHHHHHHHHHHHhhhHHHHHHHHHhhhccC--CChHHeEEEeccCCCcceEEeeecc
Confidence 34555677777 4444444 5678999999998775444444433333222 233444444442223 89999843
No 8
>cd06845 Bcl-2_like Apoptosis regulator proteins of the Bcl-2 family, named after B-cell lymphoma 2. This alignment model spans what have been described as Bcl-2 homology regions BH1, BH2, BH3, and BH4. Many members of this family have an additional C-terminal transmembrane segment. Some homologous proteins, which are not included in this model, may miss either the BH4 (Bax, Bak) or the BH2 (Bcl-X(S)) region, and some appear to only share the BH3 region (Bik, Bim, Bad, Bid, Egl-1). This family is involved in the regulation of the outer mitochondrial membrane's permeability and in promoting or preventing the release of apoptogenic factors, which in turn may trigger apoptosis by activating caspases. Bcl-2 and the closely related Bcl-X(L) are anti-apoptotic key regulators of programmed cell death. They are assumed to function via heterodimeric protein-protein interactions, binding pro-apoptotic proteins such as Bad (BCL2-antagonist of cell death), Bid, and Bim, by specifically interacting
Probab=28.45 E-value=60 Score=26.74 Aligned_cols=28 Identities=18% Similarity=0.269 Sum_probs=20.4
Q ss_pred CCCchHHHHHHHHHHHHHHHHhcCchhH
Q 024034 10 HRGSAYLNALTQEIEKKLQRALASPSQR 37 (273)
Q Consensus 10 ~~~s~~~~~L~~ei~kkL~~Al~s~~qr 37 (273)
.+.+.-+.+++-|+++|.+.++..-.++
T Consensus 33 ~~~~~~Lr~~~dele~~~~~~f~~~~~~ 60 (144)
T cd06845 33 SEVAETLRRVGDELEEKHRRLFENMCRQ 60 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677888899999888887654444
No 9
>KOG2089 consensus Metalloendopeptidase family - saccharolysin & thimet oligopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=25.41 E-value=1.2e+02 Score=32.76 Aligned_cols=108 Identities=29% Similarity=0.380 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHhcCchhHHHHHHHHHhhhhhhhchH----HHHhhhcCC-CCCCCCCcCCCCcchhHHHHHH-----
Q 024034 17 NALTQEIEKKLQRALASPSQRRNLLQELFADIALEVDDR----ARDIILSGE-EGGICPAEDGIDSRLCFYDVLA----- 86 (273)
Q Consensus 17 ~~L~~ei~kkL~~Al~s~~qr~~ll~eLFaDial~vDdr----a~~~i~~~~-~d~Is~~~~~~~~~~cfYevLA----- 86 (273)
+.|+.|+-+||.++.-.++-=-.+=|..|+|+-+++-.- ..+.+.+.- +=.+.|......+.-||=+|.|
T Consensus 558 e~l~eEl~~kl~~~r~~~~gl~tlrqL~~a~~D~~lht~~d~~~~~~~~~l~~~i~~~p~~~~d~~pcsF~hifa~gy~A 637 (718)
T KOG2089|consen 558 EPLPEELLKKLILTRTVNAGLFTLRQLVLADFDLELHTKTDADLADTYRQLCQEISIVPATPGDNMPCSFGHIFAGGYAA 637 (718)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhccccchHHHHHHhchhheecCCCCCCCCCccccchhcCchHH
Confidence 368899999999888777766666667789988887322 223333332 2223444334445545888887
Q ss_pred HHhhcCCcchhhHHHHHHHHhhhhhHHHHHHHHHHHHHhhHhcCCc-chhhHhHHHH
Q 024034 87 DHYVRMPESGQRILDLIVQLWSQLFVSHIFALLFHKWIFEVQLNND-EVLLRYSSAL 142 (273)
Q Consensus 87 ~Yy~~vPe~~~~il~L~~qLWsq~~~~~IfalLF~~WLfE~~l~~~-e~~lr~~n~l 142 (273)
.|| -.||+.-+++-||+.-|-+ --.+|. ++-.||=|.+
T Consensus 638 ~yY--------------~yLWsEv~aaDif~t~fe~----~g~~N~~~~G~ryR~ti 676 (718)
T KOG2089|consen 638 GYY--------------SYLWSEVLAADIFSTFFEQ----EGEDNIKEVGMRYRNTI 676 (718)
T ss_pred HHH--------------HHHHHHHHHHHHHHHHhhh----cCCccHHHHHHHHHHhh
Confidence 455 3589999999999987642 223333 5556665543
No 10
>PF12491 ApoB100_C: Apolipoprotein B100 C terminal; InterPro: IPR022176 This domain family is found in eukaryotes, and is approximately 60 amino acids in length. There are two conserved sequence motifs: QLS and LIDL. ApoB100 has an essential role in the assembly and secretion of triglyceride-rich lipoproteins and lipids transport.
Probab=24.31 E-value=52 Score=25.19 Aligned_cols=44 Identities=23% Similarity=0.333 Sum_probs=32.1
Q ss_pred HHHHHHHHhhcCCcchhhHHHHHHHHhhhhhHHHHHHHHHHHHHhhH
Q 024034 81 FYDVLADHYVRMPESGQRILDLIVQLWSQLFVSHIFALLFHKWIFEV 127 (273)
Q Consensus 81 fYevLA~Yy~~vPe~~~~il~L~~qLWsq~~~~~IfalLF~~WLfE~ 127 (273)
||+-+++||-+.-.+++++.+|-.|=+. ++..|-+=+-+||-..
T Consensus 9 ~sdqls~~yEK~IaeskrLIDLsIqnY~---~Fl~yi~eLL~~lq~a 52 (58)
T PF12491_consen 9 FSDQLSDYYEKFIAESKRLIDLSIQNYH---MFLRYITELLKELQSA 52 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 8999999999999999999999887543 3333433344565444
No 11
>PF11880 DUF3400: Domain of unknown function (DUF3400); InterPro: IPR021817 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 50 amino acids in length. This domain is found associated with PF02754 from PFAM, PF02913 from PFAM, PF01565 from PFAM.
Probab=24.06 E-value=49 Score=24.20 Aligned_cols=28 Identities=32% Similarity=0.442 Sum_probs=20.6
Q ss_pred CCCccchHHHHHHHhhhhcchhHHHHHHHHh
Q 024034 224 GGSADFFVIEVADQLQKLKVEPVLLHYLSQI 254 (273)
Q Consensus 224 gg~aD~FV~ev~dqLqkiK~E~vLLhYL~~~ 254 (273)
|-.+|+.|.|+++++ --|.-+=.|+.+.
T Consensus 8 ~~~aDYIVVEmA~~l---LGe~W~~~~v~~a 35 (45)
T PF11880_consen 8 GLEADYIVVEMARHL---LGENWQQDYVERA 35 (45)
T ss_pred CCccceehHHHHHHH---hhhhHHHHHHHHH
Confidence 568999999999985 3455666666654
No 12
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=22.27 E-value=2.4e+02 Score=22.00 Aligned_cols=80 Identities=21% Similarity=0.430 Sum_probs=52.2
Q ss_pred hHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHhhhhhhhchHHHHhhhcCCCCCCCCCcCCCCcchhHHHHHHHHhhcCC
Q 024034 14 AYLNALTQEIEKKLQRALASPSQRRNLLQELFADIALEVDDRARDIILSGEEGGICPAEDGIDSRLCFYDVLADHYVRMP 93 (273)
Q Consensus 14 ~~~~~L~~ei~kkL~~Al~s~~qr~~ll~eLFaDial~vDdra~~~i~~~~~d~Is~~~~~~~~~~cfYevLA~Yy~~vP 93 (273)
.+-..+..-|++.++++ .|.|+..++ -|-+||...+..++..... -.++.++.+=|.++|
T Consensus 33 ~~a~~iv~~i~~~i~~~--~~~~KL~~L-YL~dsIvkn~~~~~~~~~~-----------------~~~~~~f~~~~~~~~ 92 (114)
T cd03562 33 KHAKEIVEIIEKHIKKC--PPEQKLPLL-YLLDSIVKNVGRKYKEFFS-----------------EFLVPLFLDAYEKVD 92 (114)
T ss_pred HHHHHHHHHHHHHHHhC--CcccchHHH-HHHHHHHHHcccchHHHHH-----------------HHHHHHHHHHHHhCC
Confidence 34455566666666655 445665544 4666777666555544211 134778888888899
Q ss_pred cchhhHHHHHHHHhhhhhHH
Q 024034 94 ESGQRILDLIVQLWSQLFVS 113 (273)
Q Consensus 94 e~~~~il~L~~qLWsq~~~~ 113 (273)
++.+.=+.=+...|.+...+
T Consensus 93 ~~~r~kl~rl~~iW~~~~~f 112 (114)
T cd03562 93 EKTRKKLERLLNIWEERFVF 112 (114)
T ss_pred HHHHHHHHHHHHHccCCCCC
Confidence 99998888888999876543
No 13
>TIGR02573 LcrG_PcrG type III secretion protein LcrG. This protein is found in type III secretion operons, along with LcrR, H and V. Also known as PcrG in Pseudomonas, the protein is believed to make a 1:1 complex with PcrV (LcrV). Mutants of LcrG cause premature secretion of effector proteins into the medium.
Probab=21.12 E-value=1.2e+02 Score=24.98 Aligned_cols=37 Identities=22% Similarity=0.444 Sum_probs=27.8
Q ss_pred HHHHHHHhcCchhHHHHHHHHHhhhhhhhchHHHHhhhc
Q 024034 24 EKKLQRALASPSQRRNLLQELFADIALEVDDRARDIILS 62 (273)
Q Consensus 24 ~kkL~~Al~s~~qr~~ll~eLFaDial~vDdra~~~i~~ 62 (273)
...-..||+.+.+|..|++|+.+++.+ -+.+-+.+++
T Consensus 8 l~~AElAI~dsd~R~~llqEm~~gLgl--~p~ag~~Lf~ 44 (90)
T TIGR02573 8 LQAAELAIRDSDERNDLLQEMWQGLGL--GPVAGEVLFG 44 (90)
T ss_pred HHHHHHHHhchHHHHHHHHHHHHHcCC--ChHHHHHHHc
Confidence 344568999999999999999998765 3445555555
No 14
>PF12464 Mac: Maltose acetyltransferase ; InterPro: IPR024688 Maltose acetyltransferase uses acetyl-CoA as acetyl donor to acetylate cytoplasmic maltose [], while galactoside acetyltransferase act on galactosides. ; GO: 0016407 acetyltransferase activity; PDB: 3V4E_A 4EGG_E 4DCL_A 3FTT_A 1KRR_B 1KRU_A 1KRV_C 1KQA_A 3NZ2_J 3ECT_A ....
Probab=21.11 E-value=96 Score=21.43 Aligned_cols=27 Identities=26% Similarity=0.626 Sum_probs=17.6
Q ss_pred HHHHHHHHHhc-CchhHHHHHHHHHhhh
Q 024034 22 EIEKKLQRALA-SPSQRRNLLQELFADI 48 (273)
Q Consensus 22 ei~kkL~~Al~-s~~qr~~ll~eLFaDi 48 (273)
+.-.+.+..-. ...+|..||++||..+
T Consensus 26 ~l~~~~N~~~~~d~~~r~~llk~l~g~~ 53 (55)
T PF12464_consen 26 RLLQRYNQTPPEDPEERQELLKELFGSV 53 (55)
T ss_dssp HHHHHHHHSHTTTHHHHHHHHHHHSSBE
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhhhc
Confidence 33344443332 4599999999999754
No 15
>TIGR00865 bcl-2 Apoptosis regulator. in artificial membranes at acidic pH, proapoptotic Bcl-2 family proteins (including Bax and Bak) probably induce the mitochondrial permeability transition and cytochrome c release by interacting with permeability transition pores, the most important component for pore fomation of which is VDAC.
Probab=20.58 E-value=86 Score=28.76 Aligned_cols=26 Identities=19% Similarity=0.296 Sum_probs=18.2
Q ss_pred CchHHHHHHHHHHHHHHHHhcCchhH
Q 024034 12 GSAYLNALTQEIEKKLQRALASPSQR 37 (273)
Q Consensus 12 ~s~~~~~L~~ei~kkL~~Al~s~~qr 37 (273)
.+.-+.+++.|+|+|-++++..=.++
T Consensus 67 v~~~Lr~igdEle~~~~~~f~~m~~q 92 (213)
T TIGR00865 67 VHQALRRAGDEFERRYRRAFSDMTSQ 92 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677999999988887644333
No 16
>PF12022 DUF3510: Domain of unknown function (DUF3510); InterPro: IPR024603 The COG complex comprises eight proteins (COG1-8) and plays critical roles in Golgi structure and function []. This uncharacterised domain is found in the C-terminal of COG complex subunit 2 proteins.
Probab=20.37 E-value=4.2e+02 Score=21.88 Aligned_cols=57 Identities=16% Similarity=0.295 Sum_probs=43.4
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHH--hcCchhHHHHHHHHHhhhhhhhchHHHHhhhc
Q 024034 6 SSSTHRGSAYLNALTQEIEKKLQRA--LASPSQRRNLLQELFADIALEVDDRARDIILS 62 (273)
Q Consensus 6 ~~~~~~~s~~~~~L~~ei~kkL~~A--l~s~~qr~~ll~eLFaDial~vDdra~~~i~~ 62 (273)
...|...|.|-..+-+-+..=+... ...++.+.+++..++++++-..-..+.+.+.+
T Consensus 27 k~~Pt~~S~yV~~il~Pl~~F~~~~~~~~~~~~~~~~~~~v~~~v~~~y~~~~~evL~s 85 (125)
T PF12022_consen 27 KPVPTKPSPYVSSILRPLKSFLEEYSSYLSPEIIEEWLQKVITEVTERYYEIASEVLTS 85 (125)
T ss_pred CCCCCCccHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3447778888887766665544444 34678899999999999999999998887766
No 17
>PF14497 GST_C_3: Glutathione S-transferase, C-terminal domain; PDB: 3AY8_A 2UZ8_B 1V2A_C 2HNL_A 2YV9_B 3H1N_A 3FR6_A 1Q4J_B 1PA3_B 1OKT_B ....
Probab=20.22 E-value=1.8e+02 Score=21.67 Aligned_cols=35 Identities=34% Similarity=0.462 Sum_probs=26.8
Q ss_pred cccCC---CccchHHHHHHHhhhh---cchhHHHHHHHHhh
Q 024034 221 FLVGG---SADFFVIEVADQLQKL---KVEPVLLHYLSQIK 255 (273)
Q Consensus 221 Fl~gg---~aD~FV~ev~dqLqki---K~E~vLLhYL~~~~ 255 (273)
|+.|. .||+.|-..+.++.-- |.=|-|..|+++|+
T Consensus 58 ~l~G~~~T~AD~~v~~~l~~~~~~~~~~~~p~L~~w~~ri~ 98 (99)
T PF14497_consen 58 FLVGDKPTLADIAVFGFLASLRWADFPKDYPNLVRWYERIE 98 (99)
T ss_dssp SSSSSS--HHHHHHHHHHHHHHCCHHTTTCHHHHHHHHHHH
T ss_pred eecCCCCCHHHHHHHHHHHHHhhcccccccHHHHHHHHhhc
Confidence 99994 8999999888766532 23378999999885
Done!