Query 024035
Match_columns 273
No_of_seqs 226 out of 1540
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 17:05:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024035.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024035hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bvo_A CO-chaperone protein HS 100.0 6.6E-53 2.3E-57 373.7 23.8 194 80-273 8-204 (207)
2 3hho_A CO-chaperone protein HS 100.0 2E-41 6.8E-46 292.5 18.2 161 112-272 3-168 (174)
3 1fpo_A HSC20, chaperone protei 100.0 9.4E-41 3.2E-45 287.7 19.0 160 113-272 1-164 (171)
4 3uo3_A J-type CO-chaperone JAC 100.0 1.3E-38 4.5E-43 276.8 14.8 153 111-271 9-172 (181)
5 2l6l_A DNAJ homolog subfamily 99.8 1.7E-22 5.7E-27 170.2 0.1 100 111-213 8-108 (155)
6 1wjz_A 1700030A21RIK protein; 99.7 1.1E-17 3.8E-22 129.3 7.3 78 111-190 14-92 (94)
7 2ej7_A HCG3 gene; HCG3 protein 99.7 2.3E-16 7.9E-21 119.1 7.9 70 111-186 7-76 (82)
8 2dn9_A DNAJ homolog subfamily 99.6 2.4E-16 8E-21 118.2 7.3 69 111-186 5-73 (79)
9 2yua_A Williams-beuren syndrom 99.6 4.2E-16 1.4E-20 122.2 8.1 71 111-188 15-85 (99)
10 2qsa_A DNAJ homolog DNJ-2; J-d 99.6 3.7E-16 1.3E-20 124.3 7.8 73 112-187 14-86 (109)
11 2ctp_A DNAJ homolog subfamily 99.6 5.7E-16 1.9E-20 116.0 7.5 69 111-187 5-73 (78)
12 1hdj_A Human HSP40, HDJ-1; mol 99.6 6.9E-16 2.3E-20 115.3 7.7 67 112-186 2-68 (77)
13 2cug_A Mkiaa0962 protein; DNAJ 99.6 1E-15 3.5E-20 117.4 8.8 69 111-187 15-83 (88)
14 2och_A Hypothetical protein DN 99.6 8.4E-16 2.9E-20 113.8 7.1 64 111-184 6-69 (73)
15 2ctr_A DNAJ homolog subfamily 99.6 1.2E-15 3.9E-20 117.2 7.7 68 111-186 5-72 (88)
16 2dmx_A DNAJ homolog subfamily 99.6 9E-16 3.1E-20 118.4 7.1 69 112-186 8-76 (92)
17 2lgw_A DNAJ homolog subfamily 99.6 1.1E-15 3.9E-20 120.2 7.2 68 113-186 2-69 (99)
18 2ctq_A DNAJ homolog subfamily 99.6 2.1E-15 7.2E-20 120.8 7.8 70 111-187 18-87 (112)
19 2ctw_A DNAJ homolog subfamily 99.6 2.9E-15 9.9E-20 119.5 8.1 68 111-185 15-82 (109)
20 2o37_A Protein SIS1; HSP40, J- 99.6 2.8E-15 9.7E-20 116.0 6.9 66 111-186 6-71 (92)
21 1bq0_A DNAJ, HSP40; chaperone, 99.5 3.3E-15 1.1E-19 117.7 3.7 68 112-186 2-69 (103)
22 2ys8_A RAB-related GTP-binding 99.5 9.1E-15 3.1E-19 112.9 5.3 63 111-181 25-87 (90)
23 1gh6_A Large T antigen; tumor 99.5 2.7E-15 9.2E-20 121.3 -0.7 65 112-185 7-71 (114)
24 3apq_A DNAJ homolog subfamily 99.5 3.5E-14 1.2E-18 122.1 6.1 67 113-186 2-68 (210)
25 1faf_A Large T antigen; J doma 99.4 2.8E-14 9.7E-19 107.9 3.3 62 112-182 10-71 (79)
26 1n4c_A Auxilin; four helix bun 99.4 4.5E-14 1.6E-18 122.7 3.7 66 113-182 117-182 (182)
27 2pf4_E Small T antigen; PP2A, 99.4 2.8E-14 9.6E-19 123.2 -0.1 66 112-186 10-75 (174)
28 1iur_A KIAA0730 protein; DNAJ 99.4 1.4E-13 4.7E-18 106.5 3.3 63 111-179 14-76 (88)
29 3ag7_A Putative uncharacterize 99.3 7.2E-13 2.5E-17 105.7 4.7 63 112-177 40-104 (106)
30 3lz8_A Putative chaperone DNAJ 99.3 2.9E-13 1E-17 126.9 0.0 66 112-185 27-92 (329)
31 2guz_A Mitochondrial import in 99.3 1.9E-12 6.5E-17 95.7 3.8 58 112-179 13-70 (71)
32 2qwo_B Putative tyrosine-prote 99.2 5.1E-12 1.7E-16 98.6 3.6 59 113-175 33-91 (92)
33 3apo_A DNAJ homolog subfamily 99.1 7.5E-12 2.6E-16 126.6 0.3 68 111-185 19-86 (780)
34 2y4t_A DNAJ homolog subfamily 98.5 9.1E-08 3.1E-12 86.7 6.5 68 113-184 382-449 (450)
35 2guz_B Mitochondrial import in 98.0 8.2E-06 2.8E-10 59.5 5.0 53 115-176 6-59 (65)
36 1gp8_A Protein (scaffolding pr 69.6 6.6 0.00023 25.6 4.0 32 230-261 7-38 (40)
37 3myf_A Sensor protein; HPT, hi 69.5 10 0.00035 29.5 6.1 39 222-260 22-60 (119)
38 3us6_A Histidine-containing ph 67.3 5.6 0.00019 32.6 4.3 52 218-269 70-130 (153)
39 2a0b_A HPT domain; sensory tra 66.5 31 0.0011 26.4 8.3 43 218-260 55-105 (125)
40 4esj_A Type-2 restriction enzy 62.8 2.9 0.0001 37.5 1.8 24 82-105 34-64 (257)
41 3iqt_A Signal transduction his 61.2 8.3 0.00028 30.4 4.0 39 222-260 31-69 (123)
42 2con_A RUH-035 protein, NIN on 60.8 3.1 0.00011 31.1 1.3 23 83-105 16-38 (79)
43 1yvi_A Histidine-containing ph 58.7 38 0.0013 27.1 7.7 53 218-270 71-132 (149)
44 2kdx_A HYPA, hydrogenase/ureas 57.8 4.5 0.00015 31.6 1.9 26 82-107 73-100 (119)
45 3pwf_A Rubrerythrin; non heme 57.0 3.8 0.00013 34.4 1.4 31 83-119 139-169 (170)
46 3a43_A HYPD, hydrogenase nicke 56.8 2.7 9.3E-05 34.2 0.5 26 82-107 70-117 (139)
47 1pft_A TFIIB, PFTFIIBN; N-term 52.9 5.2 0.00018 26.5 1.3 28 83-110 6-37 (50)
48 4abm_A Charged multivesicular 51.8 68 0.0023 23.5 10.2 61 204-271 6-66 (79)
49 1twf_L ABC10-alpha, DNA-direct 49.6 8.7 0.0003 27.9 2.2 25 83-107 29-56 (70)
50 2pzi_A Probable serine/threoni 43.7 17 0.00057 35.8 3.8 46 112-172 628-675 (681)
51 1yuz_A Nigerythrin; rubrythrin 43.1 8.3 0.00028 33.1 1.4 23 83-105 172-194 (202)
52 2lbz_A Thuricin17, thurincin H 41.2 6.6 0.00023 23.7 0.3 13 84-105 3-15 (31)
53 2kmz_A Tumor necrosis factor r 40.6 14 0.00047 25.3 1.8 35 70-110 13-47 (53)
54 2r25_A Phosphorelay intermedia 40.3 1.2E+02 0.0042 25.3 8.2 60 196-260 7-67 (167)
55 2lcq_A Putative toxin VAPC6; P 39.1 11 0.00036 30.9 1.4 23 83-105 133-156 (165)
56 2i0m_A Phosphate transport sys 38.4 1.2E+02 0.0042 24.7 8.0 28 243-270 33-60 (216)
57 3h0g_I DNA-directed RNA polyme 37.8 13 0.00044 29.0 1.6 29 83-111 5-40 (113)
58 3ghg_A Fibrinogen alpha chain; 37.5 47 0.0016 32.9 5.8 14 129-142 66-79 (562)
59 1sum_B Phosphate transport sys 37.5 1.2E+02 0.004 25.5 7.8 27 244-270 34-60 (235)
60 3qt1_I DNA-directed RNA polyme 36.6 23 0.00079 28.6 3.0 30 82-111 24-60 (133)
61 1dl6_A Transcription factor II 36.3 23 0.00079 24.4 2.6 26 83-108 12-41 (58)
62 2cp9_A EF-TS, EF-TSMT, elongat 35.9 33 0.0011 24.4 3.4 36 221-258 12-47 (64)
63 3ihu_A Transcriptional regulat 35.1 83 0.0028 26.1 6.5 50 166-215 45-99 (222)
64 2zjr_Z 50S ribosomal protein L 35.1 14 0.00049 25.9 1.3 21 83-105 31-51 (60)
65 3v2d_5 50S ribosomal protein L 34.8 14 0.00049 25.9 1.3 21 83-105 31-51 (60)
66 1lko_A Rubrerythrin all-iron(I 34.6 9.2 0.00031 32.4 0.3 32 83-120 156-188 (191)
67 1ee8_A MUTM (FPG) protein; bet 33.8 16 0.00053 32.7 1.7 25 82-106 235-264 (266)
68 1t72_A Phosphate transport sys 31.4 1.6E+02 0.0056 24.1 7.7 23 248-270 80-102 (227)
69 2e62_A Protein AT5G25060; CWF2 31.1 50 0.0017 23.4 3.6 33 204-241 23-55 (61)
70 2d74_B Translation initiation 29.2 42 0.0014 27.6 3.4 32 83-114 105-142 (148)
71 3u8p_A Cytochrome B562 integra 28.2 2.3E+02 0.0078 26.4 8.4 46 218-264 97-142 (347)
72 2xzf_A Formamidopyrimidine-DNA 28.0 17 0.00057 32.5 0.8 24 82-105 242-270 (271)
73 2gd5_A Charged multivesicular 27.9 2.1E+02 0.007 23.5 7.6 48 220-267 24-75 (179)
74 1xwm_A PHOU, phosphate uptake 27.7 1.6E+02 0.0055 24.1 7.0 23 248-270 76-98 (217)
75 1k82_A Formamidopyrimidine-DNA 27.6 17 0.00058 32.4 0.8 23 82-104 240-267 (268)
76 2akl_A PHNA-like protein PA012 27.5 22 0.00075 29.1 1.4 25 83-107 28-54 (138)
77 1e52_A Excinuclease ABC subuni 27.1 1.1E+02 0.0037 21.5 4.9 35 229-263 22-56 (63)
78 3u6p_A Formamidopyrimidine-DNA 26.8 16 0.00054 32.8 0.4 23 82-104 245-272 (273)
79 3j20_Y 30S ribosomal protein S 26.0 25 0.00086 23.6 1.3 24 83-106 20-46 (50)
80 1k3x_A Endonuclease VIII; hydr 25.9 18 0.00062 32.1 0.7 23 82-104 234-261 (262)
81 2pk7_A Uncharacterized protein 25.7 15 0.0005 26.5 0.0 29 83-111 9-40 (69)
82 1e8e_A Cytochrome C''; oxidore 25.3 1.4E+02 0.0048 23.8 5.8 44 142-189 76-119 (124)
83 1yvi_A Histidine-containing ph 24.8 2.5E+02 0.0087 22.0 8.5 41 220-260 41-83 (149)
84 2rfr_A Uncharacterized protein 24.4 35 0.0012 26.1 2.1 22 232-253 20-41 (155)
85 3k7a_M Transcription initiatio 24.2 49 0.0017 30.2 3.3 26 83-108 22-53 (345)
86 1x4w_A Hypothetical protein FL 23.7 32 0.0011 24.8 1.5 9 83-91 16-24 (67)
87 2hf1_A Tetraacyldisaccharide-1 23.0 15 0.00052 26.3 -0.3 29 83-111 9-40 (68)
88 1use_A VAsp, vasodilator-stimu 22.6 1.4E+02 0.0048 19.8 4.4 25 221-245 16-40 (45)
89 2jr6_A UPF0434 protein NMA0874 22.3 16 0.00054 26.3 -0.4 29 83-111 9-40 (68)
90 3cw2_K Translation initiation 21.5 76 0.0026 25.7 3.6 28 83-110 104-137 (139)
91 2js4_A UPF0434 protein BB2007; 20.7 16 0.00053 26.5 -0.7 28 83-110 9-39 (70)
92 3irb_A Uncharacterized protein 20.6 21 0.00071 28.9 -0.0 22 83-105 48-69 (145)
No 1
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=100.00 E-value=6.6e-53 Score=373.73 Aligned_cols=194 Identities=31% Similarity=0.690 Sum_probs=182.7
Q ss_pred CCCCCCCCCCCC--CCCCCcccCCCCCCCCCCCCCCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHH
Q 024035 80 ASNATCWNCNEA--PKAAPFLFCESCRSVQPVDHSVDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKERE 157 (273)
Q Consensus 80 ~~~~~Cw~C~~~--~~~~~~~fC~~C~~iqp~~~~~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~ 157 (273)
.....||+|+.. +.....+||++|+++||++...|||++|||+++|++|..+|+++||+|++++|||++++.++.|++
T Consensus 8 ~~~~~Cw~C~~~~~~~~~~~~fC~~c~~~q~~~~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~ 87 (207)
T 3bvo_A 8 SNYPRCWNCGGPWGPGREDRFFCPQCRALQAPDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKD 87 (207)
T ss_dssp ---CBCSSSCCBCCSSCSCCCBCTTTCCBCCCCTTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHH
T ss_pred CCCCCCCCCCCCcccccccccccccccccCCCCCCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHH
Confidence 346899999985 245678999999999999989999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCcchhHHHHHHhhCCcCCCC-CCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Q 024035 158 YAAEQSGRVIEAYRTLTNPLARAIYILRLEGVEVNED-ETVSEPELLMEIMEIREAVEDAADSQTLKEIQSQMQEKLIHW 236 (273)
Q Consensus 158 ~a~~~s~~IN~AY~tL~dP~~Ra~YlL~L~G~~~~ee-~~~~d~efLmeiME~rE~leea~d~~~L~~l~~~~~~~i~~~ 236 (273)
.+.++|..||+||+||+||.+|+.|++.++|+++.++ ++.+||+|||++|||||+|+++.+.++|++|..+++++++++
T Consensus 88 ~a~~~f~~In~AY~vLsdp~~R~~Yd~~l~G~~~~~e~~~~~d~~fLme~me~~E~le~~~~~~~l~~l~~~~~~~~~~~ 167 (207)
T 3bvo_A 88 FSEKHSTLVNDAYKTLLAPLSRGLYLLKLHGIEIPERTDYEMDRQFLIEIMEINEKLAEAESEAAMKEIESIVKAKQKEF 167 (207)
T ss_dssp HHHHHHHHHHHHHHHHHSHHHHHHHHHHHTTCCCCSSCSSSSCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHhcCCCcccccccCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998866 688999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHhHHHHHHHHHhhC
Q 024035 237 GNSFADAYQNRNFDEARVCIRRMTYYHRVNEEIAKKL 273 (273)
Q Consensus 237 ~~~l~~af~~~d~~~A~~~l~kLkYl~ki~~eI~~Kl 273 (273)
.+.|.++|+.+||++|++.++|||||.||.++|++|+
T Consensus 168 ~~~l~~~~~~~d~~~A~~~v~kL~y~~kl~~~i~~~~ 204 (207)
T 3bvo_A 168 TDNVSSAFEQDDFEEAKEILTKMRYFSNIEEKIKLKK 204 (207)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999985
No 2
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=100.00 E-value=2e-41 Score=292.47 Aligned_cols=161 Identities=30% Similarity=0.591 Sum_probs=151.1
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHhhCCcC
Q 024035 112 SVDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYILRLEGVEV 191 (273)
Q Consensus 112 ~~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL~L~G~~~ 191 (273)
..|||++|||+++|.||..+|+++||+|++++|||++++.++.++..+.+.|..||+||+||+||.+|+.|++.|+|+++
T Consensus 3 ~~d~Y~iLgl~~~a~id~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~g~~~ 82 (174)
T 3hho_A 3 AMNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRAEYLLSLQGIEM 82 (174)
T ss_dssp -CCHHHHTTCCSSSCCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTTCCC
T ss_pred CCCHHHHcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHccCCCc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC-CCCCCHHHHHHHHHHHHHHHhcCC----HHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhHHHHH
Q 024035 192 NED-ETVSEPELLMEIMEIREAVEDAAD----SQTLKEIQSQMQEKLIHWGNSFADAYQNRNFDEARVCIRRMTYYHRVN 266 (273)
Q Consensus 192 ~ee-~~~~d~efLmeiME~rE~leea~d----~~~L~~l~~~~~~~i~~~~~~l~~af~~~d~~~A~~~l~kLkYl~ki~ 266 (273)
.++ .+..||+|||++|||||+|+++.+ .++|++|..+++++++++.+.|.++|+.+||++|+..++|||||.||.
T Consensus 83 ~~e~~~~~d~~fLme~me~rE~le~~~~~~d~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~d~~~A~~~~~kL~f~~kl~ 162 (174)
T 3hho_A 83 NAEQQTLQDPMFLMEQMELREELESVTACADPEAALVAFDTKVTAMQRHYLAQLQGQLAQSEWLAAADQIRKLKFIAKLK 162 (174)
T ss_dssp C----CCCCHHHHHHHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 765 478999999999999999999863 466999999999999999999999999999999999999999999999
Q ss_pred HHHHhh
Q 024035 267 EEIAKK 272 (273)
Q Consensus 267 ~eI~~K 272 (273)
++|+++
T Consensus 163 ~~i~~~ 168 (174)
T 3hho_A 163 NEVERV 168 (174)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999874
No 3
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=100.00 E-value=9.4e-41 Score=287.65 Aligned_cols=160 Identities=28% Similarity=0.537 Sum_probs=152.9
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHhhCCcCC
Q 024035 113 VDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYILRLEGVEVN 192 (273)
Q Consensus 113 ~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL~L~G~~~~ 192 (273)
+|||++|||+++++||..+|+++||+|++++|||++++.++.+++.+.+.|..||+||+||+||.+|+.|++.++|+++.
T Consensus 1 ~d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~g~~~~ 80 (171)
T 1fpo_A 1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLHGFDLA 80 (171)
T ss_dssp CHHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTTTCCTT
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHhcCCCcc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CC-CCCCCHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhHHHHHHH
Q 024035 193 ED-ETVSEPELLMEIMEIREAVEDAA---DSQTLKEIQSQMQEKLIHWGNSFADAYQNRNFDEARVCIRRMTYYHRVNEE 268 (273)
Q Consensus 193 ee-~~~~d~efLmeiME~rE~leea~---d~~~L~~l~~~~~~~i~~~~~~l~~af~~~d~~~A~~~l~kLkYl~ki~~e 268 (273)
++ .+.+||+|||++|||||+|+++. |.++|++|..+++++++++.+.|.++|+.+||++|+..++|||||.||.++
T Consensus 81 ~e~~~~~d~~fLme~me~rE~lee~~~~~d~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~kl~y~~kl~~~ 160 (171)
T 1fpo_A 81 SEQHTVRDTAFLMEQLELREELDEIEQAKDEARLESFIKRVKKMFDTRHQLMVEQLDNETWDAAADTCRKLRFLDKLRSS 160 (171)
T ss_dssp CSSSCCSCHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHH
Confidence 65 67899999999999999999985 566799999999999999999999999999999999999999999999999
Q ss_pred HHhh
Q 024035 269 IAKK 272 (273)
Q Consensus 269 I~~K 272 (273)
|+++
T Consensus 161 i~~~ 164 (171)
T 1fpo_A 161 AEQL 164 (171)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9875
No 4
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=100.00 E-value=1.3e-38 Score=276.82 Aligned_cols=153 Identities=22% Similarity=0.532 Sum_probs=141.7
Q ss_pred CCCCcccccC-----cccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHH
Q 024035 111 HSVDYFQIFG-----LGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYILR 185 (273)
Q Consensus 111 ~~~nyFellg-----l~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL~ 185 (273)
...|||++|| ..+.|++|..+|+++||+|++++|||++++ +.+.|..||+||+||+||.+|+.|++.
T Consensus 9 ~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~--------a~~~f~~i~~AY~vL~dp~~R~~Yd~~ 80 (181)
T 3uo3_A 9 FTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ--------GSEQSSTLNQAYHTLKDPLRRSQYMLK 80 (181)
T ss_dssp CSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS--------CSSGGGSHHHHHHHHHSHHHHHHHHHH
T ss_pred CCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc--------HHHHHHHHHHHHHHHcChHHHHHHHHH
Confidence 4679999995 333488999999999999999999999976 345789999999999999999999999
Q ss_pred h-hCCcCCCCC-----CCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 024035 186 L-EGVEVNEDE-----TVSEPELLMEIMEIREAVEDAADSQTLKEIQSQMQEKLIHWGNSFADAYQNRNFDEARVCIRRM 259 (273)
Q Consensus 186 L-~G~~~~ee~-----~~~d~efLmeiME~rE~leea~d~~~L~~l~~~~~~~i~~~~~~l~~af~~~d~~~A~~~l~kL 259 (273)
| +|+++.+++ +..|++|||++||+||+|+++.+.++|++|..+++++++++.+.|.++|+.+||++|+..+++|
T Consensus 81 l~~g~~~~~e~~~~~~~~~d~~fLme~me~rE~leea~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~d~~~A~~~~~kL 160 (181)
T 3uo3_A 81 LLRNIDLTQEQTSNEVTTSDPQLLLKVLDIHDELSQMDDEAGVKLLEKQNKERIQDIEAQLGQCYNDKDYAAAVKLTVEL 160 (181)
T ss_dssp HHHCCCTTSHHHHHHHHHTCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhCCCccccccccccccCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 9 999988653 5689999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHh
Q 024035 260 TYYHRVNEEIAK 271 (273)
Q Consensus 260 kYl~ki~~eI~~ 271 (273)
|||.||.++|++
T Consensus 161 ~y~~kl~~~ik~ 172 (181)
T 3uo3_A 161 KYWYNLAKAFKD 172 (181)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999999985
No 5
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=99.84 E-value=1.7e-22 Score=170.16 Aligned_cols=100 Identities=18% Similarity=0.224 Sum_probs=88.7
Q ss_pred CCCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHhhCC
Q 024035 111 HSVDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKS-EKEREYAAEQSGRVIEAYRTLTNPLARAIYILRLEGV 189 (273)
Q Consensus 111 ~~~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~-~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL~L~G~ 189 (273)
...|||++|||++++ +.++|+++||+|++++|||++++.+ +.+++.+.+.+..||+||+||+||.+|+.|++.+.|.
T Consensus 8 ~~~~~y~iLgv~~~a--~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~~~ 85 (155)
T 2l6l_A 8 PKKDWYSILGADPSA--NISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRCED 85 (155)
T ss_dssp CCSHHHHHHTCCTTC--CHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHHHH
T ss_pred CCCChhHhcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcchh
Confidence 357999999999987 8999999999999999999998875 4788889999999999999999999999999999876
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHH
Q 024035 190 EVNEDETVSEPELLMEIMEIREAV 213 (273)
Q Consensus 190 ~~~ee~~~~d~efLmeiME~rE~l 213 (273)
.+.+ .+..+++|+|++||++|+.
T Consensus 86 ~~~~-~~~~~~~~~~~~m~~~e~~ 108 (155)
T 2l6l_A 86 DLRN-VGPVDAQVYLEEMSWNEGD 108 (155)
T ss_dssp HHHT-TCSSSEEEETTTSEEETTT
T ss_pred hccc-cccccceeeHHHhccccCC
Confidence 6554 4667889999999998753
No 6
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.71 E-value=1.1e-17 Score=129.26 Aligned_cols=78 Identities=21% Similarity=0.269 Sum_probs=70.0
Q ss_pred CCCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHhhCC
Q 024035 111 HSVDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHS-KSEKEREYAAEQSGRVIEAYRTLTNPLARAIYILRLEGV 189 (273)
Q Consensus 111 ~~~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~-~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL~L~G~ 189 (273)
...|||++|||++.+ +..+|+++||+|++++|||++.. .++.++..+.+.|..|++||++|+||.+|+.|+..+.|.
T Consensus 14 ~~~~~y~iLgv~~~a--s~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~~ 91 (94)
T 1wjz_A 14 LKKDWYSILGADPSA--NMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRSGP 91 (94)
T ss_dssp SCSCHHHHTTCCTTC--CHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSCCS
T ss_pred CCCChHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHccCC
Confidence 357999999999966 99999999999999999999974 356667788999999999999999999999999998775
Q ss_pred c
Q 024035 190 E 190 (273)
Q Consensus 190 ~ 190 (273)
.
T Consensus 92 ~ 92 (94)
T 1wjz_A 92 S 92 (94)
T ss_dssp C
T ss_pred C
Confidence 3
No 7
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=2.3e-16 Score=119.07 Aligned_cols=70 Identities=26% Similarity=0.424 Sum_probs=61.8
Q ss_pred CCCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHh
Q 024035 111 HSVDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYILRL 186 (273)
Q Consensus 111 ~~~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL~L 186 (273)
...|||++|||++.+ +..+|+++||+|++++|||++... .+.+.+.+..||+||++|+||.+|+.|+...
T Consensus 7 ~~~~~y~iLgv~~~a--s~~eIk~ayr~l~~~~HPDk~~~~----~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g 76 (82)
T 2ej7_A 7 GMVDYYEVLDVPRQA--SSEAIKKAYRKLALKWHPDKNPEN----KEEAERRFKQVAEAYEVLSDAKKRDIYDRYG 76 (82)
T ss_dssp SSCCHHHHTTCCTTC--CHHHHHHHHHHHHTTSCTTTCSTT----HHHHHHHHHHHHHHHHHHSSTTHHHHHHHTC
T ss_pred CCcCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCc----HHHHHHHHHHHHHHHHHHCCHHHHHHHHHcC
Confidence 357999999999976 999999999999999999998654 2356788999999999999999999998754
No 8
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=2.4e-16 Score=118.23 Aligned_cols=69 Identities=28% Similarity=0.470 Sum_probs=60.8
Q ss_pred CCCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHh
Q 024035 111 HSVDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYILRL 186 (273)
Q Consensus 111 ~~~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL~L 186 (273)
...|||++|||++.+ +..+|+++||+|++++|||++.+.+. +.+.+..||+||++|+||.+|+.|+...
T Consensus 5 ~~~~~y~iLgv~~~a--~~~~Ik~ayr~l~~~~HPD~~~~~~~-----a~~~f~~i~~Ay~~L~d~~~R~~YD~~g 73 (79)
T 2dn9_A 5 SSGDYYQILGVPRNA--SQKEIKKAYYQLAKKYHPDTNKDDPK-----AKEKFSQLAEAYEVLSDEVKRKQYDAYG 73 (79)
T ss_dssp CCSCHHHHHTCCTTC--CHHHHHHHHHHHHHHTCTTTCSSCTT-----HHHHHHHHHHHHHHHHSHHHHHHHHHSC
T ss_pred CCCCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCCHH-----HHHHHHHHHHHHHHHCCHHHHHHHHhcc
Confidence 457999999999965 99999999999999999999986543 4567899999999999999999998644
No 9
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=4.2e-16 Score=122.17 Aligned_cols=71 Identities=23% Similarity=0.288 Sum_probs=63.0
Q ss_pred CCCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHhhC
Q 024035 111 HSVDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYILRLEG 188 (273)
Q Consensus 111 ~~~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL~L~G 188 (273)
...|||++|||++.+ +..+|+++||+|++++|||++.+... +.+.|..||+||++|+||.+|+.|+..|.+
T Consensus 15 ~~~~~Y~vLgv~~~a--s~~eIk~ayr~l~~~~HPDk~~~~~~-----a~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~ 85 (99)
T 2yua_A 15 SRTALYDLLGVPSTA--TQAQIKAAYYRQCFLYHPDRNSGSAE-----AAERFTRISQAYVVLGSATLRRKYDRGLLS 85 (99)
T ss_dssp CSSHHHHHHTCCTTC--CHHHHHHHHHHHHHHSCTTTCSSCSH-----HHHHHHHHHHHHHHTTSHHHHHHHHHTCCC
T ss_pred CccCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCCHH-----HHHHHHHHHHHHHHHCCHHHHHHHHHhccc
Confidence 457999999999966 99999999999999999999976543 456789999999999999999999987754
No 10
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.64 E-value=3.7e-16 Score=124.28 Aligned_cols=73 Identities=25% Similarity=0.449 Sum_probs=66.2
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHhh
Q 024035 112 SVDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYILRLE 187 (273)
Q Consensus 112 ~~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL~L~ 187 (273)
..|||++|||+++ .|+..+|+++||+|++++|||++++ +.++..+.+.+..||+||++|+||.+|+.|+..+.
T Consensus 14 ~~~~y~iLgv~~~-a~s~~eIk~aYr~l~~~~HPDk~~~--~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~ 86 (109)
T 2qsa_A 14 LENCYDVLEVNRE-EFDKQKLAKAYRALARKHHPDRVKN--KEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLD 86 (109)
T ss_dssp TSCHHHHTTCCGG-GCCHHHHHHHHHHHHHHTCGGGCCS--HHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred CCCHHHHcCCCCC-CCCHHHHHHHHHHHHHHHCcCCCCC--ccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcc
Confidence 5799999999997 3599999999999999999999876 56677889999999999999999999999998764
No 11
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=5.7e-16 Score=116.00 Aligned_cols=69 Identities=30% Similarity=0.441 Sum_probs=60.7
Q ss_pred CCCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHhh
Q 024035 111 HSVDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYILRLE 187 (273)
Q Consensus 111 ~~~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL~L~ 187 (273)
...|||++|||++.+ +..+|+++|++|++++|||++... .+.+.+..|++||++|+||.+|+.|+..+.
T Consensus 5 ~~~~~y~iLgv~~~a--s~~eIk~ayr~l~~~~HPDk~~~~------~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~ 73 (78)
T 2ctp_A 5 SSGDYYEILGVSRGA--SDEDLKKAYRRLALKFHPDKNHAP------GATEAFKAIGTAYAVLSNPEKRKQYDQFGS 73 (78)
T ss_dssp CSCCHHHHHTCCTTC--CHHHHHHHHHHHHTTSCTTTCSSH------HHHHHHHHHHHHHHHHTSHHHHHHHHHTCS
T ss_pred CCCCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCc------cHHHHHHHHHHHHHHHCCHHHHHHHHHcCc
Confidence 357999999999976 999999999999999999998752 245688999999999999999999987553
No 12
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.62 E-value=6.9e-16 Score=115.28 Aligned_cols=67 Identities=30% Similarity=0.492 Sum_probs=59.5
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHh
Q 024035 112 SVDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYILRL 186 (273)
Q Consensus 112 ~~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL~L 186 (273)
..|||++|||++.+ +..+|+++|++|++++|||++.+.. +.+.+..||+||++|+||.+|+.|+...
T Consensus 2 ~~~~y~iLgv~~~a--s~~~Ik~ayr~l~~~~HPD~~~~~~------~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~ 68 (77)
T 1hdj_A 2 GKDYYQTLGLARGA--SDEEIKRAYRRQALRYHPDKNKEPG------AEEKFKEIAEAYDVLSDPRKREIFDRYG 68 (77)
T ss_dssp CCCSHHHHTCCTTC--CHHHHHHHHHHHHHTTCTTTCCCTT------HHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred CCCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCcc------HHHHHHHHHHHHHHHCCHHHHHHHHHHc
Confidence 46899999999976 9999999999999999999997643 4467899999999999999999998643
No 13
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.62 E-value=1e-15 Score=117.45 Aligned_cols=69 Identities=20% Similarity=0.339 Sum_probs=60.9
Q ss_pred CCCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHhh
Q 024035 111 HSVDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYILRLE 187 (273)
Q Consensus 111 ~~~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL~L~ 187 (273)
...|||++|||++.+ +..+|+++||+|++++|||++.+.. +.+.+..||+||++|+||.+|+.|+....
T Consensus 15 ~~~d~y~iLgv~~~a--s~~eIk~ayr~l~~~~HPDk~~~~~------~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~ 83 (88)
T 2cug_A 15 LDFDPYRVLGVSRTA--SQADIKKAYKKLAREWHPDKNKDPG------AEDRFIQISKAYEILSNEEKRTNYDHYGS 83 (88)
T ss_dssp SSSCHHHHHTCCTTC--CHHHHHHHHHHHHHHSCTTTCCSTT------HHHHHHHHHHHHHHHHSHHHHHHHHHHTT
T ss_pred CCCCHHHHcCcCCCC--CHHHHHHHHHHHHHHHCcCCCCChh------HHHHHHHHHHHHHHHCCHHHHHHHHHcCC
Confidence 357999999999966 9999999999999999999998643 44578999999999999999999987543
No 14
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.61 E-value=8.4e-16 Score=113.84 Aligned_cols=64 Identities=25% Similarity=0.482 Sum_probs=57.5
Q ss_pred CCCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHH
Q 024035 111 HSVDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYIL 184 (273)
Q Consensus 111 ~~~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL 184 (273)
...|||++|||++++ +..+|+++|++|++++|||++++. .+.+..|++||++|+||.+|+.|+.
T Consensus 6 ~~~~~y~iLgl~~~a--~~~eIk~ayr~l~~~~HPD~~~~~--------~~~f~~i~~Ay~~L~d~~~R~~YD~ 69 (73)
T 2och_A 6 KETGYYDVLGVKPDA--SDNELKKAYRKMALKFHPDKNPDG--------AEQFKQISQAYEVLSDEKKRQIYDQ 69 (73)
T ss_dssp CCCCHHHHHTCCTTC--CHHHHHHHHHHHHHHTCTTTCTTC--------HHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred CCCCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCcCH--------HHHHHHHHHHHHHHCCHHHHHHHHh
Confidence 357999999999966 999999999999999999998753 2467899999999999999999985
No 15
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=1.2e-15 Score=117.16 Aligned_cols=68 Identities=25% Similarity=0.362 Sum_probs=60.5
Q ss_pred CCCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHh
Q 024035 111 HSVDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYILRL 186 (273)
Q Consensus 111 ~~~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL~L 186 (273)
...|||++|||++.+ +..+|+++||+|++++|||++... .+.+.+..||+||++|+||.+|+.|+..+
T Consensus 5 ~~~~~y~iLgv~~~a--s~~eIk~ayr~l~~~~HPDk~~~~------~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~ 72 (88)
T 2ctr_A 5 SSGSYYDILGVPKSA--SERQIKKAFHKLAMKYHPDKNKSP------DAEAKFREIAEAYETLSDANRRKEYDTLG 72 (88)
T ss_dssp CCCSHHHHHTCCTTC--CHHHHHHHHHHHHHHTCTTTCCSH------HHHHHHHHHHHHHHHHHSSHHHHHHHHTC
T ss_pred CCCCHHHHcCcCCCC--CHHHHHHHHHHHHHHHCcCCCCCh------HHHHHHHHHHHHHHHHCCHHHHHHHHHhC
Confidence 357999999999965 999999999999999999998731 35678899999999999999999999765
No 16
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=9e-16 Score=118.43 Aligned_cols=69 Identities=25% Similarity=0.405 Sum_probs=61.3
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHh
Q 024035 112 SVDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYILRL 186 (273)
Q Consensus 112 ~~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL~L 186 (273)
..|||++|||++.+ +..+|+++||+|++++|||++.... +.+.+.+..||+||++|+||.+|+.|+...
T Consensus 8 ~~~~y~iLgv~~~a--s~~eIk~ayr~l~~~~HPDk~~~~~----~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~ 76 (92)
T 2dmx_A 8 MANYYEVLGVQASA--SPEDIKKAYRKLALRWHPDKNPDNK----EEAEKKFKLVSEAYEVLSDSKKRSLYDRAG 76 (92)
T ss_dssp CCCHHHHHTCCTTC--CTTHHHHHHHHHHHHTCTTTCSSCS----HHHHHHHHHHHHHHHHHHSHHHHHHHHHHC
T ss_pred CcCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCCCCCCccH----HHHHHHHHHHHHHHHHHCCHHHHHHHHHhC
Confidence 46999999999966 8899999999999999999987653 246778999999999999999999998754
No 17
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.60 E-value=1.1e-15 Score=120.23 Aligned_cols=68 Identities=24% Similarity=0.406 Sum_probs=61.2
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHh
Q 024035 113 VDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYILRL 186 (273)
Q Consensus 113 ~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL~L 186 (273)
.|||++|||++++ +.++|+++||+|++++|||++.... +.+.+.+..||+||++|+||.+|+.|+...
T Consensus 2 ~d~Y~iLgv~~~a--s~~eIk~aYr~la~~~HPDk~~~~~----~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g 69 (99)
T 2lgw_A 2 ASYYEILDVPRSA--SADDIKKAYRRKALQWHPDKNPDNK----EFAEKKFKEVAEAYEVLSDKHKREIYDRYG 69 (99)
T ss_dssp CCHHHHSSSCTTS--CHHHHHHHHHHHHHHTSTTTCCSCC----HHHHHHHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred CCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCccH----HHHHHHHHHHHHHHHHHCCHHHHHHHHHhC
Confidence 4899999999977 8999999999999999999987653 346778999999999999999999999865
No 18
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=2.1e-15 Score=120.77 Aligned_cols=70 Identities=24% Similarity=0.306 Sum_probs=62.2
Q ss_pred CCCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHhh
Q 024035 111 HSVDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYILRLE 187 (273)
Q Consensus 111 ~~~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL~L~ 187 (273)
...|||++|||++.+ +..+|+++||+|++++|||++.+.+. +.+.+..|++||++|+||.+|+.|+..+.
T Consensus 18 ~~~d~Y~iLgv~~~a--s~~eIk~ayr~l~~~~HPDk~~~~~~-----a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 87 (112)
T 2ctq_A 18 DTEDYYTLLGCDELS--SVEQILAEFKVRALECHPDKHPENPK-----AVETFQKLQKAKEILTNEESRARYDHWRR 87 (112)
T ss_dssp CCCCHHHHTTCCTTS--CHHHHHHHHHHHHHTTCTTTCTTCST-----HHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred CCCCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCcHH-----HHHHHHHHHHHHHHHCCHHHHHHHHHhhh
Confidence 468999999999966 99999999999999999999986543 45678999999999999999999998764
No 19
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.58 E-value=2.9e-15 Score=119.52 Aligned_cols=68 Identities=22% Similarity=0.355 Sum_probs=60.5
Q ss_pred CCCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHH
Q 024035 111 HSVDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYILR 185 (273)
Q Consensus 111 ~~~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL~ 185 (273)
...|||++|||++.+ +..+|+++||+|++++|||++.+.+ .+.+.+..||+||++|+||.+|+.|+..
T Consensus 15 ~~~~~Y~vLgv~~~a--s~~eIk~aYr~la~~~HPDk~~~~~-----~a~~~f~~i~~Ay~vL~d~~~R~~YD~~ 82 (109)
T 2ctw_A 15 SGESLYHVLGLDKNA--TSDDIKKSYRKLALKYHPDKNPDNP-----EAADKFKEINNAHAILTDATKRNIYDKY 82 (109)
T ss_dssp CSCCHHHHHTCCTTC--CHHHHHHHHHHHHHHSCTTTSTTCH-----HHHHHHHHHHHHHHHHTCHHHHHHHHHT
T ss_pred CCCCHHHHcCcCCCC--CHHHHHHHHHHHHHHHCcCCCCCcH-----HHHHHHHHHHHHHHHHcCHHHHHHHHHh
Confidence 457999999999965 9999999999999999999997642 2567889999999999999999999864
No 20
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.57 E-value=2.8e-15 Score=115.96 Aligned_cols=66 Identities=21% Similarity=0.401 Sum_probs=58.7
Q ss_pred CCCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHh
Q 024035 111 HSVDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYILRL 186 (273)
Q Consensus 111 ~~~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL~L 186 (273)
...|||++|||++.+ +..+|+++||+|++++|||++.+. .+.+..||+||++|+||.+|+.|+...
T Consensus 6 ~~~~~y~iLgv~~~a--s~~eIk~ayr~l~~~~HPDk~~~~--------~~~f~~i~~Ay~~L~d~~~R~~YD~~~ 71 (92)
T 2o37_A 6 KETKLYDLLGVSPSA--NEQELKKGYRKAALKYHPDKPTGD--------TEKFKEISEAFEILNDPQKREIYDQYG 71 (92)
T ss_dssp SCCHHHHHHTCCTTC--CHHHHHHHHHHHHHHHCTTSTTCC--------HHHHHHHHHHHHHHTSHHHHHHHHHHC
T ss_pred cCCCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCh--------HHHHHHHHHHHHHHCCHHHHHHHHHHC
Confidence 457999999999965 999999999999999999998654 236789999999999999999998754
No 21
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.53 E-value=3.3e-15 Score=117.72 Aligned_cols=68 Identities=29% Similarity=0.454 Sum_probs=60.0
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHh
Q 024035 112 SVDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYILRL 186 (273)
Q Consensus 112 ~~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL~L 186 (273)
..|||++|||++.. +..+|+++||+|++++|||++.+.+. +.+.+..||+||++|+||.+|+.|+...
T Consensus 2 ~~~~y~iLgv~~~a--s~~eIk~ayr~l~~~~HPDk~~~~~~-----a~~~f~~i~~Ay~~L~d~~~R~~YD~~~ 69 (103)
T 1bq0_A 2 KQDYYEILGVSKTA--EEREIRKAYKRLAMKYHPDRNQGDKE-----AEAKFKEIKEAYEVLTDSQKRAAYDQYG 69 (103)
T ss_dssp CCCSTTTTSSCSSC--CHHHHHHHHHHHHTTTCTTTCTTTCT-----HHHHHHHHTTTTTSTTCSHHHHHTTTST
T ss_pred CCCHHHHcCcCCCC--CHHHHHHHHHHHHHHHCcCCCCCcHH-----HHHHHHHHHHHHHHHCCHHHHHHHHHHh
Confidence 36899999999965 99999999999999999999986543 3467899999999999999999998754
No 22
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=9.1e-15 Score=112.89 Aligned_cols=63 Identities=16% Similarity=0.298 Sum_probs=55.6
Q ss_pred CCCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHH
Q 024035 111 HSVDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAI 181 (273)
Q Consensus 111 ~~~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~ 181 (273)
...|||++|||++.+ +..+|+++||+|++++|||++..... .+.|..||+||++|+||.+|+.
T Consensus 25 ~~~~~y~iLgv~~~a--s~~eIk~aYr~la~~~HPDk~~~~~~------~~~f~~i~~Ay~~L~d~~~R~~ 87 (90)
T 2ys8_A 25 NSKDSWDMLGVKPGA--SRDEVNKAYRKLAVLLHPDKCVAPGS------EDAFKAVVNARTALLKNIKSGP 87 (90)
T ss_dssp TCSSHHHHHTCCTTC--CHHHHHHHHHHHHHHHCTTTCCCTTH------HHHHHHHHHHHHHHHHHHCCSC
T ss_pred cCCCHHHHcCcCCCC--CHHHHHHHHHHHHHHHCcCCCCCccH------HHHHHHHHHHHHHHCCcccccC
Confidence 357999999999965 99999999999999999999986543 3468999999999999999874
No 23
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.47 E-value=2.7e-15 Score=121.28 Aligned_cols=65 Identities=17% Similarity=0.168 Sum_probs=57.5
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHH
Q 024035 112 SVDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYILR 185 (273)
Q Consensus 112 ~~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL~ 185 (273)
..+||++|||++.+..+..+|+++||+|++++|||+.++ .+.+..||+||++|+||.+|+.|...
T Consensus 7 ~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~---------~e~f~~I~~AYevL~d~~~R~~~~~~ 71 (114)
T 1gh6_A 7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD---------EEKMKKMNTLYKKMEDGVKYAHQPDF 71 (114)
T ss_dssp HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT---------TTTTHHHHHHHHHHHHHHHSCCSSCC
T ss_pred hhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc---------HHHHHHHHHHHHHHCCHHHHHHhhhc
Confidence 368999999999886666999999999999999999765 24678999999999999999999753
No 24
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.47 E-value=3.5e-14 Score=122.12 Aligned_cols=67 Identities=18% Similarity=0.323 Sum_probs=59.7
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHh
Q 024035 113 VDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYILRL 186 (273)
Q Consensus 113 ~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL~L 186 (273)
.|||++|||++++ +..+|+++||+|++++|||++++.++ +.+.+..|++||++|+||.+|+.|+...
T Consensus 2 ~~~y~~l~~~~~a--~~~~ik~ay~~l~~~~HPD~~~~~~~-----~~~~f~~i~~Ay~~L~~~~~r~~yd~~~ 68 (210)
T 3apq_A 2 QNFYSLLGVSKTA--SSREIRQAFKKLALKLHPDKNPNNPN-----AHGDFLKINRAYEVLKDEDLRKKYDKYG 68 (210)
T ss_dssp CCHHHHHTCCTTC--CHHHHHHHHHHHHHHHCGGGCTTCTT-----HHHHHHHHHHHHHHHTSHHHHHHHHHHT
T ss_pred CCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCChH-----HHHHHHHHHHHHHHhCCHHHHHHHHHhc
Confidence 5899999999976 99999999999999999999976553 4467899999999999999999998754
No 25
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.45 E-value=2.8e-14 Score=107.88 Aligned_cols=62 Identities=13% Similarity=0.132 Sum_probs=54.7
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHH
Q 024035 112 SVDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIY 182 (273)
Q Consensus 112 ~~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~Y 182 (273)
..++|++|||++++..+..+|+++||+|++++|||+.++ .+.|..||+||++|+||.+|+.+
T Consensus 10 ~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~---------~~~f~~i~~AYe~L~~~~~r~~~ 71 (79)
T 1faf_A 10 KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS---------HALMQELNSLWGTFKTEVYNLRM 71 (79)
T ss_dssp HHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC---------HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---------HHHHHHHHHHHHHHhhHHHHHHH
Confidence 357999999999855699999999999999999999643 24679999999999999999874
No 26
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=99.43 E-value=4.5e-14 Score=122.70 Aligned_cols=66 Identities=17% Similarity=0.279 Sum_probs=60.0
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHH
Q 024035 113 VDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIY 182 (273)
Q Consensus 113 ~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~Y 182 (273)
.|||++|||++.. +..+|+++||+|++++|||++.+.+.++ ++.+.|..||+||++|+||.+|+.|
T Consensus 117 ~d~Y~vLgv~~~A--s~~eIKkAYRklal~~HPDK~~~~~~e~--~A~~~F~~I~eAYevLsD~~kR~~Y 182 (182)
T 1n4c_A 117 ETKWKPVGMADLV--TPEQVKKVYRKAVLVVHPDKATGQPYEQ--YAKMIFMELNDAWSEFENQGQKPLY 182 (182)
T ss_dssp CCCCCCCCGGGGS--SHHHHHHHHHHHHHHTCGGGGSSCTTHH--HHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred cchhhcCCCCCCC--CHHHHHHHHHHHHHHHCcCcCCCcchHH--HHHHHHHHHHHHHHHHCCHHhhhhC
Confidence 6899999999965 9999999999999999999998765443 7889999999999999999999987
No 27
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.39 E-value=2.8e-14 Score=123.23 Aligned_cols=66 Identities=17% Similarity=0.150 Sum_probs=56.1
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHh
Q 024035 112 SVDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYILRL 186 (273)
Q Consensus 112 ~~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL~L 186 (273)
..|||++|||+++++.|.++|+++||+|++++|||++++. +.+..||+||++|+||.+|+.|+...
T Consensus 10 ~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~~---------e~F~~I~~AYevLsdp~kR~~YD~~G 75 (174)
T 2pf4_E 10 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE---------EKMKKMNTLYKKMEDGVKYAHQPDFG 75 (174)
T ss_dssp HHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---CC---------TTTTHHHHHHHHHHHHHHHHTSCGGG
T ss_pred cccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCCH---------HHHHHHHHHHHHhCCHHHHHHHhccC
Confidence 4689999999999877789999999999999999997652 35789999999999999999997643
No 28
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.38 E-value=1.4e-13 Score=106.45 Aligned_cols=63 Identities=11% Similarity=0.028 Sum_probs=55.4
Q ss_pred CCCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchh
Q 024035 111 HSVDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLAR 179 (273)
Q Consensus 111 ~~~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~R 179 (273)
...++|++|||++++ +.++|+++||+|++++|||++.+.. +.+.+.|..||+||++|+|+..|
T Consensus 14 ~~~~~y~vLgv~~~a--s~~eIKkaYrkla~~~HPDk~~~~~----~~a~~~F~~I~~AYevL~~~~~r 76 (88)
T 1iur_A 14 ILKEVTSVVEQAWKL--PESERKKIIRRLYLKWHPDKNPENH----DIANEVFKHLQNEINRLEKQAFL 76 (88)
T ss_dssp CHHHHHHHHHHTTSS--CSHHHHHHHHHHHHHTCTTTSSSCH----HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHhCCCCCC--CHHHHHHHHHHHHHHHCCCCCCCch----HHHHHHHHHHHHHHHHHHhhccc
Confidence 457999999999966 9999999999999999999986542 34678999999999999998877
No 29
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.33 E-value=7.2e-13 Score=105.66 Aligned_cols=63 Identities=13% Similarity=0.133 Sum_probs=56.1
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHhcCcc
Q 024035 112 SVDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHS--KSEKEREYAAEQSGRVIEAYRTLTNPL 177 (273)
Q Consensus 112 ~~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~--~~~~E~~~a~~~s~~IN~AY~tL~dP~ 177 (273)
..|||++||++. . +..+|+++||+|++++|||++.+ .++.++..|.+.|..|++||++|+||.
T Consensus 40 ~~d~Y~vl~~~~-A--s~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~ 104 (106)
T 3ag7_A 40 GSGWKPVPLMDM-I--EGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG 104 (106)
T ss_dssp TSCCCCCCGGGS-C--SHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cCCHHHHcCCCC-C--CHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence 469999999985 4 99999999999999999999874 456777789999999999999999985
No 30
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=99.28 E-value=2.9e-13 Score=126.93 Aligned_cols=66 Identities=23% Similarity=0.385 Sum_probs=0.0
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHH
Q 024035 112 SVDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYILR 185 (273)
Q Consensus 112 ~~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL~ 185 (273)
..|||++|||++.+ +.++|+++||+|++++|||++... .+.+.+.+||+||++|+||.+|+.|+..
T Consensus 27 ~~d~Y~vLgv~~~a--s~~eIk~aYr~la~~~HPDk~~~~------~a~~~f~~i~~Ay~vL~d~~~R~~YD~~ 92 (329)
T 3lz8_A 27 LKDYYAILGVQPTD--DLKTIKTAYRRLARKYHPDVSKEN------DAEAKFKDLAEAWEVLKDEQRRAEYDQL 92 (329)
T ss_dssp --------------------------------------------------------------------------
T ss_pred ccCHHHHcCcCCCC--CHHHHHHHHHHHHHHHCCCCCCCh------HHHHHHHHHHHHHHHhhhhhhhcccchh
Confidence 46999999999976 899999999999999999998653 2556789999999999999999999864
No 31
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.27 E-value=1.9e-12 Score=95.74 Aligned_cols=58 Identities=22% Similarity=0.177 Sum_probs=48.9
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchh
Q 024035 112 SVDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLAR 179 (273)
Q Consensus 112 ~~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~R 179 (273)
..++|++|||++. +.+.++|+++||+|++++|||+.+ + .+.+..||+||++|+|+..|
T Consensus 13 ~~~~y~iLgl~~~-~a~~~eIk~ayr~l~~~~HPDk~g--~-------~~~f~~i~~Aye~L~~~~~r 70 (71)
T 2guz_A 13 SKEALQILNLTEN-TLTKKKLKEVHRKIMLANHPDKGG--S-------PFLATKINEAKDFLEKRGIS 70 (71)
T ss_dssp HHHHHHHTTCCTT-TCCHHHHHHHHHHHHHHHCGGGTC--C-------HHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHcCCCCC-CCCHHHHHHHHHHHHHHHCCCCCC--C-------HHHHHHHHHHHHHHhhhhhc
Confidence 3589999999983 249999999999999999999942 2 13678999999999998765
No 32
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.21 E-value=5.1e-12 Score=98.61 Aligned_cols=59 Identities=15% Similarity=0.218 Sum_probs=51.8
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcC
Q 024035 113 VDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTN 175 (273)
Q Consensus 113 ~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~d 175 (273)
.++|++||+++.. +..+|+++||++++++|||++++.+.+ ..|.+.|..|++||++|++
T Consensus 33 ~~~y~~Lgv~~~a--s~~eIKkAYRklal~~HPDK~~~~~~~--~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 33 ETKWKPVGMADLV--TPEQVKKVYRKAVLVVHPCKATGQPYE--QYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp CCSCCCCCGGGSS--SHHHHHHHHHHHHHHTCHHHHTTSTTH--HHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeecCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCchhH--hHHHHHHHHHHHHHHHHHh
Confidence 5799999999966 999999999999999999999865432 3678899999999999975
No 33
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.11 E-value=7.5e-12 Score=126.65 Aligned_cols=68 Identities=19% Similarity=0.372 Sum_probs=39.0
Q ss_pred CCCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHH
Q 024035 111 HSVDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYILR 185 (273)
Q Consensus 111 ~~~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL~ 185 (273)
...|||++|||++.+ +.++|+++||+|++++|||++++.+. +.+.+..||+||++|+||.+|+.|+..
T Consensus 19 ~~~~~y~~lg~~~~a--~~~~i~~ay~~l~~~~hpd~~~~~~~-----~~~~f~~i~~ay~~L~~~~~r~~yd~~ 86 (780)
T 3apo_A 19 HDQNFYSLLGVSKTA--SSREIRQAFKKLALKLHPDKNPNNPN-----AHGDFLKINRAYEVLKDEDLRKKYDKY 86 (780)
T ss_dssp ----CHHHHTCCTTC--CHHHHHHHHCC----------------------------CTHHHHHHSHHHHHHHTTC
T ss_pred CCCCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCChH-----HHHHHHHHHHHHHHHcChHHHHHHHhh
Confidence 467999999999966 99999999999999999999865432 456789999999999999999999863
No 34
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.54 E-value=9.1e-08 Score=86.72 Aligned_cols=68 Identities=22% Similarity=0.394 Sum_probs=56.5
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHH
Q 024035 113 VDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYIL 184 (273)
Q Consensus 113 ~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL 184 (273)
.++|.++|++... +..++++.|+++...+|||++.. +.+++.+.+.+..|++||++|+||.+|..|+-
T Consensus 382 ~~~y~~lg~~~~~--~~~~~~~~y~~~~l~~~pd~~~~--~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~ 449 (450)
T 2y4t_A 382 RDYYKILGVKRNA--KKQEIIKAYRKLALQWHPDNFQN--EEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD 449 (450)
T ss_dssp CCSGGGSCSSTTC--CTTHHHHHHHHHHHHSCGGGCCS--HHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred hhHHHHhCCCccC--CHHHHHHHHHHHHHHhCCCCCCC--chHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence 3899999999976 77899999999999999999854 45567788999999999999999999999974
No 35
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=97.97 E-value=8.2e-06 Score=59.53 Aligned_cols=53 Identities=11% Similarity=0.100 Sum_probs=41.4
Q ss_pred cccccCcccCC-CCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCc
Q 024035 115 YFQIFGLGKKY-EIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNP 176 (273)
Q Consensus 115 yFellgl~~~f-~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP 176 (273)
-+.||||+++. ..+.++|+++||+|....|||+-+ +. -..+.||.|++.|...
T Consensus 6 A~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGG--S~-------yl~~ki~~Ake~l~~~ 59 (65)
T 2guz_B 6 SCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGG--SF-------YLQSKVYRAAERLKWE 59 (65)
T ss_dssp HHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTC--CH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCC--CH-------HHHHHHHHHHHHHHHH
Confidence 36799999860 138999999999999999999943 22 2336799999998644
No 36
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=69.61 E-value=6.6 Score=25.58 Aligned_cols=32 Identities=6% Similarity=-0.035 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 024035 230 QEKLIHWGNSFADAYQNRNFDEARVCIRRMTY 261 (273)
Q Consensus 230 ~~~i~~~~~~l~~af~~~d~~~A~~~l~kLkY 261 (273)
...|+.+++++-.|..+||++.++.+=.+|+.
T Consensus 7 ~d~I~aiEQqiyvA~seGd~etv~~Le~QL~~ 38 (40)
T 1gp8_A 7 AANKDAIRKQMDAAASKGDVETYRKLKAKLKG 38 (40)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 45788888999999999999999887777653
No 37
>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP}
Probab=69.52 E-value=10 Score=29.55 Aligned_cols=39 Identities=10% Similarity=0.072 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 024035 222 LKEIQSQMQEKLIHWGNSFADAYQNRNFDEARVCIRRMT 260 (273)
Q Consensus 222 L~~l~~~~~~~i~~~~~~l~~af~~~d~~~A~~~l~kLk 260 (273)
+.++....-+.+.+....|..+++.+||+++...+.+||
T Consensus 22 ~~~lL~~fl~~~~~~~~~l~~a~~~~d~~~l~~~aHkLk 60 (119)
T 3myf_A 22 ALEMLKMLLDSLPETVEKIQTALGQNDQATMLSTIHKLH 60 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344555555555556666666667677777766666665
No 38
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=67.26 E-value=5.6 Score=32.57 Aligned_cols=52 Identities=17% Similarity=0.359 Sum_probs=38.7
Q ss_pred CHHHHHHHHHHHHH--------HHHHHHHHHHHHHhccCHHHHHHHHHHHH-hHHHHHHHH
Q 024035 218 DSQTLKEIQSQMQE--------KLIHWGNSFADAYQNRNFDEARVCIRRMT-YYHRVNEEI 269 (273)
Q Consensus 218 d~~~L~~l~~~~~~--------~i~~~~~~l~~af~~~d~~~A~~~l~kLk-Yl~ki~~eI 269 (273)
|.+.+..+...++. ++.++...|+.+...++.+++...+.+++ -|.++...+
T Consensus 70 D~~~l~~~aH~LKGss~~lGa~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~e~~~v~~~L 130 (153)
T 3us6_A 70 DFKKVDAHVHQFKGSSASIGAQRVKNSCVAFRNFCEEQNIDACRRCLQQVKQEYLLVKNKL 130 (153)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777774 78888899999999999999888877765 344444443
No 39
>2a0b_A HPT domain; sensory transduction, histidine kinase, phosphotransfer, two-component system, four-helix bundle; 1.57A {Escherichia coli} SCOP: a.24.10.1 PDB: 1bdj_B 1fr0_A 1a0b_A
Probab=66.52 E-value=31 Score=26.42 Aligned_cols=43 Identities=16% Similarity=0.162 Sum_probs=21.7
Q ss_pred CHHHHHHHHHHHHH--------HHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 024035 218 DSQTLKEIQSQMQE--------KLIHWGNSFADAYQNRNFDEARVCIRRMT 260 (273)
Q Consensus 218 d~~~L~~l~~~~~~--------~i~~~~~~l~~af~~~d~~~A~~~l~kLk 260 (273)
|.+.+.++...++. .+.++...++.+...++++++...+..|.
T Consensus 55 d~~~~~~~aH~LKGsa~~lG~~~l~~~~~~lE~~~~~~~~~~~~~~~~~l~ 105 (125)
T 2a0b_A 55 DKKGIVEEGHKIKGAAGSVGLRHLQQLGQQIQSPDLPAWEDNVGEWIEEMK 105 (125)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTCTTSTTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Confidence 44445544444443 34444455555545555555555555554
No 40
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=62.76 E-value=2.9 Score=37.54 Aligned_cols=24 Identities=25% Similarity=0.767 Sum_probs=18.2
Q ss_pred CCCCCCCCCCCC-------CCCcccCCCCCC
Q 024035 82 NATCWNCNEAPK-------AAPFLFCESCRS 105 (273)
Q Consensus 82 ~~~Cw~C~~~~~-------~~~~~fC~~C~~ 105 (273)
...|++||..+. +...|+|++|+-
T Consensus 34 n~yCPnCG~~~l~~f~nN~PVaDF~C~~C~E 64 (257)
T 4esj_A 34 QSYCPNCGNNPLNHFENNRPVADFYCNHCSE 64 (257)
T ss_dssp HCCCTTTCCSSCEEC----CCCEEECTTTCC
T ss_pred CCcCCCCCChhhhhccCCCcccccccCCcch
Confidence 378999999533 445689999985
No 41
>3iqt_A Signal transduction histidine-protein kinase BARA; histidine phosphotransfer domain, HTP, structural genomics, protein structure initiative; HET: MSE BTB; 1.40A {Escherichia coli}
Probab=61.16 E-value=8.3 Score=30.41 Aligned_cols=39 Identities=10% Similarity=0.113 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 024035 222 LKEIQSQMQEKLIHWGNSFADAYQNRNFDEARVCIRRMT 260 (273)
Q Consensus 222 L~~l~~~~~~~i~~~~~~l~~af~~~d~~~A~~~l~kLk 260 (273)
..++....-+...+....|.+++..+||++....+.||+
T Consensus 31 a~elL~~fl~~~~~~~~~l~~a~~~~d~~~l~~~aHkLk 69 (123)
T 3iqt_A 31 ARDMLQMLLDFLPEVRNKVEEQLVGENPEGLVDLIHKLH 69 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345555555556666666666667677766666666664
No 42
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=60.85 E-value=3.1 Score=31.12 Aligned_cols=23 Identities=22% Similarity=0.663 Sum_probs=16.8
Q ss_pred CCCCCCCCCCCCCCcccCCCCCC
Q 024035 83 ATCWNCNEAPKAAPFLFCESCRS 105 (273)
Q Consensus 83 ~~Cw~C~~~~~~~~~~fC~~C~~ 105 (273)
..|..|-.........|||.||.
T Consensus 16 LrC~aCf~~t~~~~k~FCp~CGn 38 (79)
T 2con_A 16 LRCHGCFKTTSDMNRVFCGHCGN 38 (79)
T ss_dssp EECSSSCCEESCSSCCSCSSSCC
T ss_pred eEecccceECCCcccccccccCc
Confidence 46888887544556788999986
No 43
>1yvi_A Histidine-containing phosphotransfer protein; structural genomics, protein structure initiative, PSI, CESG, AK104879, phosphorelay mediator, HP1; 2.00A {Oryza sativa} SCOP: a.24.10.2 PDB: 2q4f_A 1wn0_A
Probab=58.66 E-value=38 Score=27.09 Aligned_cols=53 Identities=9% Similarity=0.151 Sum_probs=40.3
Q ss_pred CHHHHHHHHHHHHH--------HHHHHHHHHHHHHhccCHHHHHHHHHHHHh-HHHHHHHHH
Q 024035 218 DSQTLKEIQSQMQE--------KLIHWGNSFADAYQNRNFDEARVCIRRMTY-YHRVNEEIA 270 (273)
Q Consensus 218 d~~~L~~l~~~~~~--------~i~~~~~~l~~af~~~d~~~A~~~l~kLkY-l~ki~~eI~ 270 (273)
|.+.+..+...++. ++.++...|+.+...++++++...+.+++= |.++...+.
T Consensus 71 D~~~l~~~aH~LKGssa~lGa~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~e~~~~~~~L~ 132 (149)
T 1yvi_A 71 NFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQFCQDKSRDGCLMALAVVRNDFYDLRNKFQ 132 (149)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777765 788888899999999999999888888763 555555443
No 44
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=57.80 E-value=4.5 Score=31.65 Aligned_cols=26 Identities=31% Similarity=0.590 Sum_probs=18.1
Q ss_pred CCCCCCCCCCCC-CCCcc-cCCCCCCCC
Q 024035 82 NATCWNCNEAPK-AAPFL-FCESCRSVQ 107 (273)
Q Consensus 82 ~~~Cw~C~~~~~-~~~~~-fC~~C~~iq 107 (273)
...|++||.... ..+.. .||.|+.-+
T Consensus 73 ~~~C~~CG~~~e~~~~~~~~CP~Cgs~~ 100 (119)
T 2kdx_A 73 ELECKDCSHVFKPNALDYGVCEKCHSKN 100 (119)
T ss_dssp EEECSSSSCEECSCCSTTCCCSSSSSCC
T ss_pred eEEcCCCCCEEeCCCCCCCcCccccCCC
Confidence 368999999432 33445 799999843
No 45
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=56.97 E-value=3.8 Score=34.39 Aligned_cols=31 Identities=19% Similarity=0.477 Sum_probs=20.1
Q ss_pred CCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccccc
Q 024035 83 ATCWNCNEAPKAAPFLFCESCRSVQPVDHSVDYFQIF 119 (273)
Q Consensus 83 ~~Cw~C~~~~~~~~~~fC~~C~~iqp~~~~~nyFell 119 (273)
-.|.+||..-.....-.||.|++ ..++|+.+
T Consensus 139 ~~C~~CG~i~~~~~p~~CP~Cg~------~~~~F~~~ 169 (170)
T 3pwf_A 139 YICPICGYTAVDEAPEYCPVCGA------PKEKFVVF 169 (170)
T ss_dssp EECTTTCCEEESCCCSBCTTTCC------BGGGCEEE
T ss_pred eEeCCCCCeeCCCCCCCCCCCCC------CHHHceec
Confidence 46999999532223348999996 34566653
No 46
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=56.80 E-value=2.7 Score=34.16 Aligned_cols=26 Identities=38% Similarity=0.636 Sum_probs=17.6
Q ss_pred CCCCCCCCCCCCC-C-----------C----------cccCCCCCCCC
Q 024035 82 NATCWNCNEAPKA-A-----------P----------FLFCESCRSVQ 107 (273)
Q Consensus 82 ~~~Cw~C~~~~~~-~-----------~----------~~fC~~C~~iq 107 (273)
...|++||..... . + ...||.|++-+
T Consensus 70 ~~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~~ 117 (139)
T 3a43_A 70 VFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSHD 117 (139)
T ss_dssp EEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCCC
T ss_pred cEECCCCCCEEecccccccccccccccccccccccccCCcCccccCCc
Confidence 3689999985322 2 2 46699999844
No 47
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=52.94 E-value=5.2 Score=26.47 Aligned_cols=28 Identities=18% Similarity=0.403 Sum_probs=20.5
Q ss_pred CCCCCCCC-CC---CCCCcccCCCCCCCCCCC
Q 024035 83 ATCWNCNE-AP---KAAPFLFCESCRSVQPVD 110 (273)
Q Consensus 83 ~~Cw~C~~-~~---~~~~~~fC~~C~~iqp~~ 110 (273)
..|+.|+. .+ .....+.|+.||.+-+..
T Consensus 6 ~~CP~C~~~~l~~d~~~gelvC~~CG~v~~e~ 37 (50)
T 1pft_A 6 KVCPACESAELIYDPERGEIVCAKCGYVIEEN 37 (50)
T ss_dssp CSCTTTSCCCEEEETTTTEEEESSSCCBCCCC
T ss_pred EeCcCCCCcceEEcCCCCeEECcccCCccccc
Confidence 57999988 32 134568999999987653
No 48
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=51.81 E-value=68 Score=23.50 Aligned_cols=61 Identities=18% Similarity=0.171 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhHHHHHHHHHh
Q 024035 204 MEIMEIREAVEDAADSQTLKEIQSQMQEKLIHWGNSFADAYQNRNFDEARVCIRRMTYYHRVNEEIAK 271 (273)
Q Consensus 204 meiME~rE~leea~d~~~L~~l~~~~~~~i~~~~~~l~~af~~~d~~~A~~~l~kLkYl~ki~~eI~~ 271 (273)
..|..++|.++- |+.=...++.+++...+...+.. .++-..|..+|.+=|||++..+.+..
T Consensus 6 ~AI~~Lr~~~d~------L~kkq~~L~~~i~~e~~~Ak~~~-~knK~~Al~aLkrKK~~E~qL~q~~~ 66 (79)
T 4abm_A 6 EAIQRLRDTEEM------LSKKQEFLEKKIEQELTAAKKHG-TKNKRAALQALKRKKRYEKQLAQIDG 66 (79)
T ss_dssp HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH-HcCHHHHHHHHHHHhHHHHHHHHHHH
Confidence 456667776664 44445555666665555555544 66778999999999999999988763
No 49
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=49.58 E-value=8.7 Score=27.87 Aligned_cols=25 Identities=16% Similarity=0.489 Sum_probs=18.3
Q ss_pred CCCCCCCCC--CCCCCcccCCCCCC-CC
Q 024035 83 ATCWNCNEA--PKAAPFLFCESCRS-VQ 107 (273)
Q Consensus 83 ~~Cw~C~~~--~~~~~~~fC~~C~~-iq 107 (273)
-.|..|+.. ........|+.||. |.
T Consensus 29 Y~C~~CG~~~e~~~~d~irCp~CG~RIL 56 (70)
T 1twf_L 29 YICAECSSKLSLSRTDAVRCKDCGHRIL 56 (70)
T ss_dssp EECSSSCCEECCCTTSTTCCSSSCCCCC
T ss_pred EECCCCCCcceeCCCCCccCCCCCceEe
Confidence 479999985 33455678999998 44
No 50
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=43.71 E-value=17 Score=35.80 Aligned_cols=46 Identities=11% Similarity=0.030 Sum_probs=31.6
Q ss_pred CCCcccccCcccCCCCCH--HHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 024035 112 SVDYFQIFGLGKKYEIGN--EKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRT 172 (273)
Q Consensus 112 ~~nyFellgl~~~f~Id~--~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~t 172 (273)
..+|+.+||++-+- .. ..|+++||+|++..+++. +...+|..|+.+
T Consensus 628 ~~~~~~~lG~~~~~--~~lr~~~~~ayr~la~~~~~~~-------------~r~~lvd~a~~v 675 (681)
T 2pzi_A 628 KASTNHILGFPFTS--HGLRLGVEASLRSLARVAPTQR-------------HRYTLVDMANKV 675 (681)
T ss_dssp CCSSSEETTEESSH--HHHHHHHHHHHHHHHHHCSSHH-------------HHHHHHHHHHHH
T ss_pred CCCCcccCCCCCCh--HHHHHHHHHHHHHHHHhCCChH-------------HHHHHHHHhccc
Confidence 34588999996532 22 458999999999665551 244678887765
No 51
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=43.14 E-value=8.3 Score=33.09 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=16.5
Q ss_pred CCCCCCCCCCCCCCcccCCCCCC
Q 024035 83 ATCWNCNEAPKAAPFLFCESCRS 105 (273)
Q Consensus 83 ~~Cw~C~~~~~~~~~~fC~~C~~ 105 (273)
-.|..||..........||.|++
T Consensus 172 ~~C~~CG~i~~g~~p~~CP~C~~ 194 (202)
T 1yuz_A 172 HLCPICGYIHKGEDFEKCPICFR 194 (202)
T ss_dssp EECSSSCCEEESSCCSBCTTTCC
T ss_pred EEECCCCCEEcCcCCCCCCCCCC
Confidence 57999998533333358999997
No 52
>2lbz_A Thuricin17, thurincin H; helical loops, crosslinked, antimicrobial protein; HET: DSG 2TL DSN; NMR {Bacillus thuringiensis}
Probab=41.17 E-value=6.6 Score=23.71 Aligned_cols=13 Identities=54% Similarity=1.730 Sum_probs=9.5
Q ss_pred CCCCCCCCCCCCCcccCCCCCC
Q 024035 84 TCWNCNEAPKAAPFLFCESCRS 105 (273)
Q Consensus 84 ~Cw~C~~~~~~~~~~fC~~C~~ 105 (273)
.||+| +.|..|..
T Consensus 3 tcwsc---------lvcaacsv 15 (31)
T 2lbz_A 3 TCWSC---------LVCAACSV 15 (31)
T ss_dssp CTTGG---------GGGGGCCS
T ss_pred cHHHH---------HHHHHhHH
Confidence 68888 34888875
No 53
>2kmz_A Tumor necrosis factor receptor superfamily member; FN14, tweak, TNF receptor, CRD, tnfrsf12A, angiogenesis, APO cell adhesion; NMR {Homo sapiens}
Probab=40.61 E-value=14 Score=25.31 Aligned_cols=35 Identities=20% Similarity=0.498 Sum_probs=20.8
Q ss_pred ccccccccccCCCCCCCCCCCCCCCCCcccCCCCCCCCCCC
Q 024035 70 RSFCSESAEKASNATCWNCNEAPKAAPFLFCESCRSVQPVD 110 (273)
Q Consensus 70 r~~~~~~~~~~~~~~Cw~C~~~~~~~~~~fC~~C~~iqp~~ 110 (273)
++++.+-.++ -.|-+|.. .....||.+|.+.-|++
T Consensus 13 sswS~DLdKC---mdcs~C~~---~p~SDFC~gcs~~pp~~ 47 (53)
T 2kmz_A 13 SSWSADLDKC---MDCASCRA---RPHSDFCLGCAAAPPAP 47 (53)
T ss_dssp CBCCTTTTCC---BCSTTCSS---CCCCHHHHHHSSCSSCC
T ss_pred cccchhhhhh---hccccCCC---CcccccccccccCCCCC
Confidence 4555544332 35666655 34457999997766653
No 54
>2r25_A Phosphorelay intermediate protein YPD1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: a.24.10.2 PDB: 1c03_A 1oxk_A 1oxb_A 1c02_A 1qsp_A
Probab=40.34 E-value=1.2e+02 Score=25.26 Aligned_cols=60 Identities=15% Similarity=0.121 Sum_probs=37.9
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHH
Q 024035 196 TVSEPELLMEIMEIREAVEDAADSQTLKEIQSQMQEKLIHWGNSFADAYQ-NRNFDEARVCIRRMT 260 (273)
Q Consensus 196 ~~~d~efLmeiME~rE~leea~d~~~L~~l~~~~~~~i~~~~~~l~~af~-~~d~~~A~~~l~kLk 260 (273)
...|.+-+.++.++ ++.+ .+-+.+|-...=+.-..+...|.++++ .+|+++...+...||
T Consensus 7 ~~LD~~~f~qL~el----~dd~-p~Fv~elV~~F~edse~~l~~L~~AL~~~~D~~~L~~~aH~LK 67 (167)
T 2r25_A 7 EIINWTILNEIISM----DDDD-SDFSKGLIIQFIDQAQTTFAQMQRQLDGEKNLTELDNLGHFLK 67 (167)
T ss_dssp CSSCHHHHHHHHHT----TTTS-SHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHh----cccC-chHHHHHHHHHHHhHHHHHHHHHHHHhcccCHHHHHHHHHhhh
Confidence 34565555554333 2222 334556666666666677777888888 899988888777765
No 55
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=39.13 E-value=11 Score=30.85 Aligned_cols=23 Identities=26% Similarity=0.544 Sum_probs=16.3
Q ss_pred CCCCCCCCCCC-CCCcccCCCCCC
Q 024035 83 ATCWNCNEAPK-AAPFLFCESCRS 105 (273)
Q Consensus 83 ~~Cw~C~~~~~-~~~~~fC~~C~~ 105 (273)
-.|..|+..-. ..+.-+||.||+
T Consensus 133 y~C~~Cg~~~~~~~~~~~Cp~CG~ 156 (165)
T 2lcq_A 133 YVCIGCGRKFSTLPPGGVCPDCGS 156 (165)
T ss_dssp EEESSSCCEESSCCGGGBCTTTCC
T ss_pred EECCCCCCcccCCCCCCcCCCCCC
Confidence 57999998422 233458999997
No 56
>2i0m_A Phosphate transport system protein PHOU; zinc-binding protein, structural genomics, PSI-2, PROT structure initiative; 2.40A {Streptococcus pneumoniae}
Probab=38.40 E-value=1.2e+02 Score=24.73 Aligned_cols=28 Identities=14% Similarity=0.169 Sum_probs=14.2
Q ss_pred HHhccCHHHHHHHHHHHHhHHHHHHHHH
Q 024035 243 AYQNRNFDEARVCIRRMTYYHRVNEEIA 270 (273)
Q Consensus 243 af~~~d~~~A~~~l~kLkYl~ki~~eI~ 270 (273)
+|..+|.+.|.+.+.+=....++..+|.
T Consensus 33 al~~~d~~~a~~v~~~d~~iD~l~~~I~ 60 (216)
T 2i0m_A 33 ALASKDKEMAELIINKDHAINQGQSAIE 60 (216)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHhHHHHHHHHHHHH
Confidence 3334555555555555555555555544
No 57
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=37.85 E-value=13 Score=28.98 Aligned_cols=29 Identities=21% Similarity=0.413 Sum_probs=21.2
Q ss_pred CCCCCCCCCCCC-C------CcccCCCCCCCCCCCC
Q 024035 83 ATCWNCNEAPKA-A------PFLFCESCRSVQPVDH 111 (273)
Q Consensus 83 ~~Cw~C~~~~~~-~------~~~fC~~C~~iqp~~~ 111 (273)
..|+.||..... . ..+.|+.|+.+.+...
T Consensus 5 ~FCp~Cgn~L~~~~~~~~~~~~~~C~~C~y~~~~~~ 40 (113)
T 3h0g_I 5 QYCIECNNMLYPREDKVDRVLRLACRNCDYSEIAAT 40 (113)
T ss_dssp CCCSSSCCCCEECCCTTTCCCCEECSSSCCEECCSC
T ss_pred eeCcCCCCEeeEcccCCCCeeEEECCCCCCeEEcCC
Confidence 578999985321 1 2589999999998864
No 58
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=37.51 E-value=47 Score=32.88 Aligned_cols=14 Identities=29% Similarity=0.399 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHh
Q 024035 129 NEKLEGKYKDWQKR 142 (273)
Q Consensus 129 ~~~Lk~~Yr~Lqk~ 142 (273)
..+|+..|-++++.
T Consensus 66 INELKnqLEdlsKn 79 (562)
T 3ghg_A 66 INKLKNSLFEYQKN 79 (562)
T ss_dssp HHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 56777777777544
No 59
>1sum_B Phosphate transport system protein PHOU homolog 2; ABC transport, PST, structural genomics, berkeley STRU genomics center, BSGC; 2.00A {Thermotoga maritima} SCOP: a.7.12.1
Probab=37.47 E-value=1.2e+02 Score=25.49 Aligned_cols=27 Identities=26% Similarity=0.195 Sum_probs=13.5
Q ss_pred HhccCHHHHHHHHHHHHhHHHHHHHHH
Q 024035 244 YQNRNFDEARVCIRRMTYYHRVNEEIA 270 (273)
Q Consensus 244 f~~~d~~~A~~~l~kLkYl~ki~~eI~ 270 (273)
|..+|.+.|.+.+.+=....++..+|.
T Consensus 34 l~~~d~~~a~~V~~~d~~iD~l~~~I~ 60 (235)
T 1sum_B 34 LVERNESLAREVIADEEVVDQMEVEIQ 60 (235)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHhHHHHHHHHHHHH
Confidence 334555555555555455555555444
No 60
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=36.61 E-value=23 Score=28.57 Aligned_cols=30 Identities=20% Similarity=0.470 Sum_probs=21.9
Q ss_pred CCCCCCCCCCCCCC-------CcccCCCCCCCCCCCC
Q 024035 82 NATCWNCNEAPKAA-------PFLFCESCRSVQPVDH 111 (273)
Q Consensus 82 ~~~Cw~C~~~~~~~-------~~~fC~~C~~iqp~~~ 111 (273)
-..|+.|+....+. ..+.|+.|+...+...
T Consensus 24 ~~FCPeCgNmL~pked~~~~~l~~~CrtCgY~~~~~~ 60 (133)
T 3qt1_I 24 FRFCRDCNNMLYPREDKENNRLLFECRTCSYVEEAGS 60 (133)
T ss_dssp CCBCTTTCCBCBCCBCTTTCCBCCBCSSSCCBCCCSC
T ss_pred CeeCCCCCCEeeECccCCCceeEEECCCCCCcEEcCC
Confidence 37899999853222 1489999999988754
No 61
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=36.27 E-value=23 Score=24.39 Aligned_cols=26 Identities=31% Similarity=0.392 Sum_probs=18.2
Q ss_pred CCCCCCCCCC----CCCCcccCCCCCCCCC
Q 024035 83 ATCWNCNEAP----KAAPFLFCESCRSVQP 108 (273)
Q Consensus 83 ~~Cw~C~~~~----~~~~~~fC~~C~~iqp 108 (273)
..|+.|+... ......+|..||.|..
T Consensus 12 ~~Cp~C~~~~lv~D~~~ge~vC~~CGlVl~ 41 (58)
T 1dl6_A 12 VTCPNHPDAILVEDYRAGDMICPECGLVVG 41 (58)
T ss_dssp CSBTTBSSSCCEECSSSCCEECTTTCCEEC
T ss_pred ccCcCCCCCceeEeCCCCeEEeCCCCCEEe
Confidence 4799998721 1345689999998753
No 62
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=35.92 E-value=33 Score=24.44 Aligned_cols=36 Identities=6% Similarity=0.273 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Q 024035 221 TLKEIQSQMQEKLIHWGNSFADAYQNRNFDEARVCIRR 258 (273)
Q Consensus 221 ~L~~l~~~~~~~i~~~~~~l~~af~~~d~~~A~~~l~k 258 (273)
.+.+|+..-..-+.+|.+.|.++ +||+++|.+.|++
T Consensus 12 ~Vk~LRe~TGag~~dcKkAL~e~--~GDi~~Ai~~Lr~ 47 (64)
T 2cp9_A 12 LLMKLRRKTGYSFVNCKKALETC--GGDLKQAEIWLHK 47 (64)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHH--TSCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHc--CCCHHHHHHHHHH
Confidence 34444444444455566555443 5777777776653
No 63
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=35.11 E-value=83 Score=26.12 Aligned_cols=50 Identities=12% Similarity=0.292 Sum_probs=34.3
Q ss_pred HHHHHHHhcCcchhHHHHHHhhCC-cCCCC-C---CCCCHHHHHHHHHHHHHHHh
Q 024035 166 VIEAYRTLTNPLARAIYILRLEGV-EVNED-E---TVSEPELLMEIMEIREAVED 215 (273)
Q Consensus 166 IN~AY~tL~dP~~Ra~YlL~L~G~-~~~ee-~---~~~d~efLmeiME~rE~lee 215 (273)
+-+.|.+=..|++-|.-.|.-.|. .+... + ...+.+-+.+++++|+.||.
T Consensus 45 La~~lgVSRtpVREAl~~L~~eGlv~~~~~~G~~V~~~~~~~~~e~~~~R~~lE~ 99 (222)
T 3ihu_A 45 LVAHFGVGRNSVREALQRLAAEGIVDLQRHRGAVIRRLSLQETLDVLDVAERMTG 99 (222)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEECSTTCEEECCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCeEEecCCHHHHHHHHHHHHHHHH
Confidence 556666666677777777777774 22222 2 24577889999999998875
No 64
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=35.08 E-value=14 Score=25.92 Aligned_cols=21 Identities=19% Similarity=0.596 Sum_probs=16.4
Q ss_pred CCCCCCCCCCCCCCcccCCCCCC
Q 024035 83 ATCWNCNEAPKAAPFLFCESCRS 105 (273)
Q Consensus 83 ~~Cw~C~~~~~~~~~~fC~~C~~ 105 (273)
..|.+||.. ..+-..|++||.
T Consensus 31 ~~c~~cG~~--~~pH~vc~~CG~ 51 (60)
T 2zjr_Z 31 TECPQCHGK--KLSHHICPNCGY 51 (60)
T ss_dssp EECTTTCCE--ECTTBCCTTTCB
T ss_pred eECCCCCCE--eCCceEcCCCCc
Confidence 689999995 345678999985
No 65
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=34.80 E-value=14 Score=25.91 Aligned_cols=21 Identities=24% Similarity=0.717 Sum_probs=15.8
Q ss_pred CCCCCCCCCCCCCCcccCCCCCC
Q 024035 83 ATCWNCNEAPKAAPFLFCESCRS 105 (273)
Q Consensus 83 ~~Cw~C~~~~~~~~~~fC~~C~~ 105 (273)
..|.+||.. ..+-..|++||.
T Consensus 31 ~~c~~cGe~--~~~H~vc~~CG~ 51 (60)
T 3v2d_5 31 VPCPECKAM--KPPHTVCPECGY 51 (60)
T ss_dssp EECTTTCCE--ECTTSCCTTTCE
T ss_pred eECCCCCCe--ecceEEcCCCCc
Confidence 789999985 334567999984
No 66
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=34.63 E-value=9.2 Score=32.37 Aligned_cols=32 Identities=22% Similarity=0.575 Sum_probs=20.5
Q ss_pred CCCCCCCCCCCC-CCcccCCCCCCCCCCCCCCCcccccC
Q 024035 83 ATCWNCNEAPKA-APFLFCESCRSVQPVDHSVDYFQIFG 120 (273)
Q Consensus 83 ~~Cw~C~~~~~~-~~~~fC~~C~~iqp~~~~~nyFellg 120 (273)
-.|..||..... ...-.||.|++ ..++|+.++
T Consensus 156 ~~C~~CG~~~~g~~~p~~CP~C~~------~k~~f~~~~ 188 (191)
T 1lko_A 156 WRCRNCGYVHEGTGAPELCPACAH------PKAHFELLG 188 (191)
T ss_dssp EEETTTCCEEEEEECCSBCTTTCC------BGGGEEECC
T ss_pred EEECCCCCEeeCCCCCCCCCCCcC------CHHHHHhHh
Confidence 579999985321 11228999997 345777653
No 67
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=33.81 E-value=16 Score=32.67 Aligned_cols=25 Identities=20% Similarity=0.570 Sum_probs=18.8
Q ss_pred CCCCCCCCCCCC-----CCCcccCCCCCCC
Q 024035 82 NATCWNCNEAPK-----AAPFLFCESCRSV 106 (273)
Q Consensus 82 ~~~Cw~C~~~~~-----~~~~~fC~~C~~i 106 (273)
...|..|+..+. ....+|||.|...
T Consensus 235 g~pC~~CG~~I~~~~~~gR~t~~CP~CQ~~ 264 (266)
T 1ee8_A 235 GLPCPACGRPVERRVVAGRGTHFCPTCQGE 264 (266)
T ss_dssp TSBCTTTCCBCEEEESSSCEEEECTTTTTC
T ss_pred CCCCCCCCCEeeEEEECCCceEECCCCCCC
Confidence 378999999642 3467899999863
No 68
>1t72_A Phosphate transport system protein PHOU homolog; helix bundle, structural genomics, BSGC structure funded by NIH, protein structure initiative; 2.90A {Aquifex aeolicus} SCOP: a.7.12.1 PDB: 1t8b_A
Probab=31.40 E-value=1.6e+02 Score=24.10 Aligned_cols=23 Identities=9% Similarity=0.111 Sum_probs=15.1
Q ss_pred CHHHHHHHHHHHHhHHHHHHHHH
Q 024035 248 NFDEARVCIRRMTYYHRVNEEIA 270 (273)
Q Consensus 248 d~~~A~~~l~kLkYl~ki~~eI~ 270 (273)
+...+...+.-.++++||-+-+.
T Consensus 80 d~~~~~~~l~i~~~lERIgD~a~ 102 (227)
T 1t72_A 80 DLRMIMGIYKIVSDLERMGDEAE 102 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666667777777776554
No 69
>2e62_A Protein AT5G25060; CWF21 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Arabidopsis thaliana}
Probab=31.11 E-value=50 Score=23.42 Aligned_cols=33 Identities=15% Similarity=0.298 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Q 024035 204 MEIMEIREAVEDAADSQTLKEIQSQMQEKLIHWGNSFA 241 (273)
Q Consensus 204 meiME~rE~leea~d~~~L~~l~~~~~~~i~~~~~~l~ 241 (273)
-.+|++|++||+-.... ..+|+.+++...+.|.
T Consensus 23 vk~me~rD~LEeqG~~~-----~~eI~~kV~~~RkkL~ 55 (61)
T 2e62_A 23 VALIEYRETLEEQGMKN-----PEEIERKVEINRKRLE 55 (61)
T ss_dssp HHHHHHHHHHHHHTCCC-----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCc-----HHHHHHHHHHHHHHHH
Confidence 35799999999943211 1344445555555543
No 70
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=29.24 E-value=42 Score=27.63 Aligned_cols=32 Identities=28% Similarity=0.679 Sum_probs=21.8
Q ss_pred CCCCCCCCCCC------CCCcccCCCCCCCCCCCCCCC
Q 024035 83 ATCWNCNEAPK------AAPFLFCESCRSVQPVDHSVD 114 (273)
Q Consensus 83 ~~Cw~C~~~~~------~~~~~fC~~C~~iqp~~~~~n 114 (273)
..|..|+.+-. ..-.+-|..||+.-|++....
T Consensus 105 VlC~~C~sPdT~L~k~~r~~~l~C~ACGa~~~V~~~k~ 142 (148)
T 2d74_B 105 VICPVCGSPDTKIIKRDRFHFLKCEACGAETPIQHLLE 142 (148)
T ss_dssp SSCSSSCCTTCCCCBSSSSBCCCCSSSCCCCCCCC---
T ss_pred EECCCCCCcCcEEEEeCCEEEEEecCCCCCccccchhh
Confidence 68999998521 123466999999999976543
No 71
>3u8p_A Cytochrome B562 integral fusion with enhanced GRE fluorescent protein; directed evolution, domain insertion, energy transfer, fluor quenching; HET: CRO HEM; 2.75A {Aequorea victoria}
Probab=28.17 E-value=2.3e+02 Score=26.43 Aligned_cols=46 Identities=11% Similarity=0.181 Sum_probs=29.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhHHH
Q 024035 218 DSQTLKEIQSQMQEKLIHWGNSFADAYQNRNFDEARVCIRRMTYYHR 264 (273)
Q Consensus 218 d~~~L~~l~~~~~~~i~~~~~~l~~af~~~d~~~A~~~l~kLkYl~k 264 (273)
|.+++...+.=++.-|.++...+ .+.+.|++++|+..+.+|+=..+
T Consensus 97 ds~E~kd~~~Gl~~li~qiD~a~-~la~~g~l~eAkk~a~~~~~~r~ 142 (347)
T 3u8p_A 97 DSPEMKDFRHGFDILVGQIDDAL-KLANEGKVKEAQAAAEQLKTTRN 142 (347)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHH-HHHHTTCHHHHHHHHHTHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHhhHHH-HhhhccchHHHHHHHHHhHhHHH
Confidence 34555555555555555444443 44567899999999988875443
No 72
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=27.96 E-value=17 Score=32.47 Aligned_cols=24 Identities=21% Similarity=0.614 Sum_probs=17.9
Q ss_pred CCCCCCCCCCCC-----CCCcccCCCCCC
Q 024035 82 NATCWNCNEAPK-----AAPFLFCESCRS 105 (273)
Q Consensus 82 ~~~Cw~C~~~~~-----~~~~~fC~~C~~ 105 (273)
...|..|+..+. ....+|||.|..
T Consensus 242 G~pC~~CG~~I~~~~~~gR~t~~CP~CQ~ 270 (271)
T 2xzf_A 242 GEKCSRCGAEIQKIKVAGRGTHFCPVCQQ 270 (271)
T ss_dssp TSBCTTTCCBCEEEEETTEEEEECTTTSC
T ss_pred CCCCCCCCCEeeEEEECCCceEECCCCCC
Confidence 378999999643 345689999974
No 73
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=27.86 E-value=2.1e+02 Score=23.50 Aligned_cols=48 Identities=17% Similarity=0.118 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCHHH----HHHHHHHHHhHHHHHH
Q 024035 220 QTLKEIQSQMQEKLIHWGNSFADAYQNRNFDE----ARVCIRRMTYYHRVNE 267 (273)
Q Consensus 220 ~~L~~l~~~~~~~i~~~~~~l~~af~~~d~~~----A~~~l~kLkYl~ki~~ 267 (273)
..|++-...++.....+...|..+..+|+.+. |+++++.-+|..++..
T Consensus 24 r~Ldr~~~kle~~ekk~~~~Ikka~k~g~~~~aki~Ak~lvr~rk~~~~l~~ 75 (179)
T 2gd5_A 24 RVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYA 75 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666777777788888899999999884 6777777777777654
No 74
>1xwm_A PHOU, phosphate uptake regulator; negative phosphate uptake regulator, structural genomics, protein structure initiative, PSI; 2.50A {Geobacillus stearothermophilus} SCOP: a.7.12.1
Probab=27.68 E-value=1.6e+02 Score=24.06 Aligned_cols=23 Identities=9% Similarity=0.143 Sum_probs=14.4
Q ss_pred CHHHHHHHHHHHHhHHHHHHHHH
Q 024035 248 NFDEARVCIRRMTYYHRVNEEIA 270 (273)
Q Consensus 248 d~~~A~~~l~kLkYl~ki~~eI~ 270 (273)
|...+...+.-.++++||-+.+.
T Consensus 76 d~~~~~~~l~i~~~lERIgD~a~ 98 (217)
T 1xwm_A 76 DLRRIVAAIKIASDIERIADFAV 98 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666666677777766554
No 75
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=27.62 E-value=17 Score=32.41 Aligned_cols=23 Identities=17% Similarity=0.660 Sum_probs=17.4
Q ss_pred CCCCCCCCCCCC-----CCCcccCCCCC
Q 024035 82 NATCWNCNEAPK-----AAPFLFCESCR 104 (273)
Q Consensus 82 ~~~Cw~C~~~~~-----~~~~~fC~~C~ 104 (273)
...|..|+..+. ....+|||.|.
T Consensus 240 g~pC~~CG~~I~~~~~~gR~t~~CP~CQ 267 (268)
T 1k82_A 240 GEPCRVCGTPIVATKHAQRATFYCRQCQ 267 (268)
T ss_dssp TSBCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred CCCCCCCCCEeeEEEECCCceEECCCCC
Confidence 368999999643 34568999996
No 76
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=27.54 E-value=22 Score=29.05 Aligned_cols=25 Identities=24% Similarity=0.602 Sum_probs=19.0
Q ss_pred CCCCCCCCC--CCCCCcccCCCCCCCC
Q 024035 83 ATCWNCNEA--PKAAPFLFCESCRSVQ 107 (273)
Q Consensus 83 ~~Cw~C~~~--~~~~~~~fC~~C~~iq 107 (273)
+.|+.|+.. ......+.||-|+.--
T Consensus 28 P~CP~C~seytYeDg~l~vCPeC~hEW 54 (138)
T 2akl_A 28 PPCPQCNSEYTYEDGALLVCPECAHEW 54 (138)
T ss_dssp CCCTTTCCCCCEECSSSEEETTTTEEE
T ss_pred CCCCCCCCcceEecCCeEECCcccccc
Confidence 799999884 3345678999999743
No 77
>1e52_A Excinuclease ABC subunit; DNA excision repair, UVRB, DNA repair, UVRC binding domain; NMR {Escherichia coli} SCOP: a.2.9.1 PDB: 1qoj_A
Probab=27.11 E-value=1.1e+02 Score=21.53 Aligned_cols=35 Identities=20% Similarity=0.239 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhHH
Q 024035 229 MQEKLIHWGNSFADAYQNRNFDEARVCIRRMTYYH 263 (273)
Q Consensus 229 ~~~~i~~~~~~l~~af~~~d~~~A~~~l~kLkYl~ 263 (273)
+.+.++++.+++.++-++-+|+.|..+=-+++-+.
T Consensus 22 ~~~~i~~Le~~M~~AA~~leFE~AA~lRD~I~~L~ 56 (63)
T 1e52_A 22 LQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLR 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 34456667777888888889998855544444443
No 78
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=26.84 E-value=16 Score=32.77 Aligned_cols=23 Identities=17% Similarity=0.614 Sum_probs=17.4
Q ss_pred CCCCCCCCCCCC-----CCCcccCCCCC
Q 024035 82 NATCWNCNEAPK-----AAPFLFCESCR 104 (273)
Q Consensus 82 ~~~Cw~C~~~~~-----~~~~~fC~~C~ 104 (273)
...|..|+..+. ....+|||.|.
T Consensus 245 g~pC~~CG~~I~~~~~~gR~t~~CP~CQ 272 (273)
T 3u6p_A 245 GNPCKRCGTPIEKTVVAGRGTHYCPRCQ 272 (273)
T ss_dssp TSBCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred cCCCCCCCCeEEEEEECCCCeEECCCCC
Confidence 368999999643 24568999996
No 79
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=25.99 E-value=25 Score=23.62 Aligned_cols=24 Identities=17% Similarity=0.324 Sum_probs=14.8
Q ss_pred CCCCCCCCCCC---CCCcccCCCCCCC
Q 024035 83 ATCWNCNEAPK---AAPFLFCESCRSV 106 (273)
Q Consensus 83 ~~Cw~C~~~~~---~~~~~fC~~C~~i 106 (273)
..|+.||.... ....+.|+.|+.+
T Consensus 20 k~CP~CG~~~fm~~~~~R~~C~kCG~t 46 (50)
T 3j20_Y 20 KFCPRCGPGVFMADHGDRWACGKCGYT 46 (50)
T ss_dssp EECSSSCSSCEEEECSSEEECSSSCCE
T ss_pred ccCCCCCCceEEecCCCeEECCCCCCE
Confidence 56888877321 2245678888853
No 80
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=25.91 E-value=18 Score=32.06 Aligned_cols=23 Identities=26% Similarity=0.884 Sum_probs=17.2
Q ss_pred CCCCCCCCCCCC-----CCCcccCCCCC
Q 024035 82 NATCWNCNEAPK-----AAPFLFCESCR 104 (273)
Q Consensus 82 ~~~Cw~C~~~~~-----~~~~~fC~~C~ 104 (273)
...|..||..+. ....+|||.|.
T Consensus 234 g~pC~~CG~~I~~~~~~gR~t~~CP~CQ 261 (262)
T 1k3x_A 234 GEPCERCGSIIEKTTLSSRPFYWCPGCQ 261 (262)
T ss_dssp TSBCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred cCCCCCCCCEeEEEEECCCCeEECCCCC
Confidence 368999999643 34568999996
No 81
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=25.74 E-value=15 Score=26.54 Aligned_cols=29 Identities=17% Similarity=0.284 Sum_probs=22.1
Q ss_pred CCCCCCCCCCC---CCCcccCCCCCCCCCCCC
Q 024035 83 ATCWNCNEAPK---AAPFLFCESCRSVQPVDH 111 (273)
Q Consensus 83 ~~Cw~C~~~~~---~~~~~fC~~C~~iqp~~~ 111 (273)
..|+.|++... ....+.|+.|+..-|+..
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~d 40 (69)
T 2pk7_A 9 LACPICKGPLKLSADKTELISKGAGLAYPIRD 40 (69)
T ss_dssp CCCTTTCCCCEECTTSSEEEETTTTEEEEEET
T ss_pred eeCCCCCCcCeEeCCCCEEEcCCCCcEecCcC
Confidence 68999998532 345689999999888743
No 82
>1e8e_A Cytochrome C''; oxidoreductase(cytochrome), ligand detachment, redox-BOHR effect, paramagnetic; HET: HEC; NMR {Methylophilus methylotrophus} SCOP: a.3.1.1 PDB: 1gu2_A* 1oae_A*
Probab=25.28 E-value=1.4e+02 Score=23.84 Aligned_cols=44 Identities=16% Similarity=0.197 Sum_probs=26.6
Q ss_pred hhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHhhCC
Q 024035 142 RIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYILRLEGV 189 (273)
Q Consensus 142 ~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL~L~G~ 189 (273)
.++|+||.+....|+-+ ...=|..+..-..+..++.++.-|..+
T Consensus 76 ~~n~~Rftd~akVekwf----~rnCn~vlgr~cTa~EK~D~~ayL~s~ 119 (124)
T 1e8e_A 76 RVNTKRFTDIDKVEDEF----TKHCNDILGADCSPSEKANFIAYLLTE 119 (124)
T ss_dssp TTSTTSSCCSTTHHHHH----HHHHHHHTSSCCCHHHHHHHHHHHTTC
T ss_pred ccCccccCCHHHHHHHH----HHHhHHHHccCCCHHHHHHHHHHHHHc
Confidence 34788888776666432 123455555666677777766665543
No 83
>1yvi_A Histidine-containing phosphotransfer protein; structural genomics, protein structure initiative, PSI, CESG, AK104879, phosphorelay mediator, HP1; 2.00A {Oryza sativa} SCOP: a.24.10.2 PDB: 2q4f_A 1wn0_A
Probab=24.82 E-value=2.5e+02 Score=22.03 Aligned_cols=41 Identities=15% Similarity=0.225 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc--CHHHHHHHHHHHH
Q 024035 220 QTLKEIQSQMQEKLIHWGNSFADAYQNR--NFDEARVCIRRMT 260 (273)
Q Consensus 220 ~~L~~l~~~~~~~i~~~~~~l~~af~~~--d~~~A~~~l~kLk 260 (273)
+-+.+|....-+........|..+++.+ |++.+......||
T Consensus 41 ~~~~elv~~Fl~d~~~~l~~L~~Al~~~~~D~~~l~~~aH~LK 83 (149)
T 1yvi_A 41 GFVSEVVTLFCDDADRIINEIATLLEQPVVNFDKVDAYVHQLK 83 (149)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHH
Confidence 3445555555556666666666677665 6766666666654
No 84
>2rfr_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.16A {Novosphingobium aromaticivorans} SCOP: d.17.4.28
Probab=24.35 E-value=35 Score=26.11 Aligned_cols=22 Identities=0% Similarity=-0.000 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHhccCHHHHH
Q 024035 232 KLIHWGNSFADAYQNRNFDEAR 253 (273)
Q Consensus 232 ~i~~~~~~l~~af~~~d~~~A~ 253 (273)
.|.++......+++.+|+++..
T Consensus 20 ~I~~l~~~y~~a~D~~d~~~~~ 41 (155)
T 2rfr_A 20 EIRELIARYGPLADSGDAEALS 41 (155)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCCCHHHHH
Confidence 4555666667777777776543
No 85
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=24.17 E-value=49 Score=30.23 Aligned_cols=26 Identities=23% Similarity=0.416 Sum_probs=17.9
Q ss_pred CCCCCCCCC---C-C--CCCcccCCCCCCCCC
Q 024035 83 ATCWNCNEA---P-K--AAPFLFCESCRSVQP 108 (273)
Q Consensus 83 ~~Cw~C~~~---~-~--~~~~~fC~~C~~iqp 108 (273)
..|+.|+.. . . ......|..||.|..
T Consensus 22 ~~Cp~Cg~~~~~iv~D~~~G~~vC~~CG~Vl~ 53 (345)
T 3k7a_M 22 LTCPECKVYPPKIVERFSEGDVVCALCGLVLS 53 (345)
T ss_dssp CCCSTTCCSCCCCCCCSSSCSCCCSSSCCCCC
T ss_pred CcCcCCCCCCCceEEECCCCCEecCCCCeEcc
Confidence 579999873 1 1 234678999999774
No 86
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.74 E-value=32 Score=24.84 Aligned_cols=9 Identities=22% Similarity=0.988 Sum_probs=5.5
Q ss_pred CCCCCCCCC
Q 024035 83 ATCWNCNEA 91 (273)
Q Consensus 83 ~~Cw~C~~~ 91 (273)
..|+.|++.
T Consensus 16 ~rC~~C~kk 24 (67)
T 1x4w_A 16 RRCFQCQTK 24 (67)
T ss_dssp TBCSSSCCB
T ss_pred CcchhhCCe
Confidence 456666664
No 87
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=22.97 E-value=15 Score=26.34 Aligned_cols=29 Identities=21% Similarity=0.378 Sum_probs=21.9
Q ss_pred CCCCCCCCCCC---CCCcccCCCCCCCCCCCC
Q 024035 83 ATCWNCNEAPK---AAPFLFCESCRSVQPVDH 111 (273)
Q Consensus 83 ~~Cw~C~~~~~---~~~~~fC~~C~~iqp~~~ 111 (273)
..|+.|++... ....+.|+.|+..-|+..
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~d 40 (68)
T 2hf1_A 9 LVCPLCKGPLVFDKSKDELICKGDRLAFPIKD 40 (68)
T ss_dssp CBCTTTCCBCEEETTTTEEEETTTTEEEEEET
T ss_pred eECCCCCCcCeEeCCCCEEEcCCCCcEecCCC
Confidence 57999998532 246689999999888743
No 88
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=22.62 E-value=1.4e+02 Score=19.85 Aligned_cols=25 Identities=16% Similarity=0.264 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 024035 221 TLKEIQSQMQEKLIHWGNSFADAYQ 245 (273)
Q Consensus 221 ~L~~l~~~~~~~i~~~~~~l~~af~ 245 (273)
-|.++++++++..++++..|...|.
T Consensus 16 IL~E~RkElqK~K~EIIeAi~~El~ 40 (45)
T 1use_A 16 LLEEVKKELQKVKEEIIEAFVQELR 40 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555655555555555555444
No 89
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=22.27 E-value=16 Score=26.25 Aligned_cols=29 Identities=10% Similarity=0.180 Sum_probs=21.9
Q ss_pred CCCCCCCCCCC---CCCcccCCCCCCCCCCCC
Q 024035 83 ATCWNCNEAPK---AAPFLFCESCRSVQPVDH 111 (273)
Q Consensus 83 ~~Cw~C~~~~~---~~~~~fC~~C~~iqp~~~ 111 (273)
..|+.|++... ....+.|+.|+..-|+..
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~d 40 (68)
T 2jr6_A 9 LVCPVTKGRLEYHQDKQELWSRQAKLAYPIKD 40 (68)
T ss_dssp CBCSSSCCBCEEETTTTEEEETTTTEEEEEET
T ss_pred eECCCCCCcCeEeCCCCEEEcCCCCcEecCCC
Confidence 68999998532 246689999999888743
No 90
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=21.48 E-value=76 Score=25.74 Aligned_cols=28 Identities=21% Similarity=0.649 Sum_probs=13.7
Q ss_pred CCCCCCCCCCC------CCCcccCCCCCCCCCCC
Q 024035 83 ATCWNCNEAPK------AAPFLFCESCRSVQPVD 110 (273)
Q Consensus 83 ~~Cw~C~~~~~------~~~~~fC~~C~~iqp~~ 110 (273)
..|..|+.+-. ..-.+-|..||+.-|+.
T Consensus 104 VlC~~C~sPdT~l~k~~r~~~l~C~ACGa~~~V~ 137 (139)
T 3cw2_K 104 VECSTCKSLDTILKKEKKSWYIVCLACGAQTPVK 137 (139)
T ss_dssp SSCCSSSSSCCCSCSSCSTTTSSCCC--------
T ss_pred eECCCCCCcCcEEEEeCCeEEEEecCCCCCCccC
Confidence 78999998521 22346799999988874
No 91
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=20.72 E-value=16 Score=26.46 Aligned_cols=28 Identities=29% Similarity=0.438 Sum_probs=21.4
Q ss_pred CCCCCCCCCCC---CCCcccCCCCCCCCCCC
Q 024035 83 ATCWNCNEAPK---AAPFLFCESCRSVQPVD 110 (273)
Q Consensus 83 ~~Cw~C~~~~~---~~~~~fC~~C~~iqp~~ 110 (273)
..|+.|++... ....+.|+.|+..-|+.
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~ 39 (70)
T 2js4_A 9 LVCPVCKGRLEFQRAQAELVCNADRLAFPVR 39 (70)
T ss_dssp CBCTTTCCBEEEETTTTEEEETTTTEEEEEE
T ss_pred eECCCCCCcCEEeCCCCEEEcCCCCceecCC
Confidence 68999998532 24578999999988874
No 92
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=20.63 E-value=21 Score=28.94 Aligned_cols=22 Identities=23% Similarity=0.588 Sum_probs=16.3
Q ss_pred CCCCCCCCCCCCCCcccCCCCCC
Q 024035 83 ATCWNCNEAPKAAPFLFCESCRS 105 (273)
Q Consensus 83 ~~Cw~C~~~~~~~~~~fC~~C~~ 105 (273)
..|.+|+.... .+..+|+.|++
T Consensus 48 ~rC~~CG~~~~-PPr~~Cp~C~s 69 (145)
T 3irb_A 48 SKCSKCGRIFV-PARSYCEHCFV 69 (145)
T ss_dssp EECTTTCCEEE-SCCSEETTTTE
T ss_pred EEeCCCCcEEc-CchhhCcCCCC
Confidence 68999998432 24568999987
Done!