Query 024036
Match_columns 273
No_of_seqs 112 out of 1213
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 08:27:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024036.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024036hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK12852 groEL chaperonin GroE 100.0 3.5E-58 7.6E-63 455.0 29.4 251 1-268 271-525 (545)
2 PRK00013 groEL chaperonin GroE 100.0 1.5E-57 3.2E-62 449.9 29.3 252 1-269 270-525 (542)
3 PRK14104 chaperonin GroEL; Pro 100.0 2.6E-57 5.5E-62 448.6 29.6 250 1-267 271-524 (546)
4 PRK12850 groEL chaperonin GroE 100.0 3E-57 6.6E-62 448.0 29.5 250 1-268 271-524 (544)
5 PRK12849 groEL chaperonin GroE 100.0 4E-57 8.6E-62 446.9 30.1 251 1-269 270-524 (542)
6 PRK12851 groEL chaperonin GroE 100.0 3.2E-57 6.9E-62 447.6 28.6 250 1-268 271-524 (541)
7 PTZ00114 Heat shock protein 60 100.0 8.4E-57 1.8E-61 445.9 29.2 250 2-268 283-540 (555)
8 TIGR02348 GroEL chaperonin Gro 100.0 1.2E-56 2.6E-61 442.2 29.7 249 1-267 269-521 (524)
9 CHL00093 groEL chaperonin GroE 100.0 1.8E-56 3.8E-61 441.5 29.2 247 2-267 272-524 (529)
10 cd03344 GroEL GroEL_like type 100.0 1.6E-56 3.6E-61 440.8 28.0 247 1-265 268-518 (520)
11 PLN03167 Chaperonin-60 beta su 100.0 1.2E-54 2.6E-59 432.9 27.1 251 1-268 325-581 (600)
12 KOG0356 Mitochondrial chaperon 100.0 5.5E-52 1.2E-56 397.2 20.9 244 1-265 284-533 (550)
13 cd03342 TCP1_zeta TCP-1 (CTT o 100.0 2.4E-46 5.2E-51 366.0 22.4 221 10-268 254-483 (484)
14 COG0459 GroL Chaperonin GroEL 100.0 5.6E-46 1.2E-50 365.1 22.5 235 1-269 271-515 (524)
15 TIGR02347 chap_CCT_zeta T-comp 100.0 2.9E-45 6.3E-50 361.9 22.8 222 9-268 296-526 (531)
16 PTZ00212 T-complex protein 1 s 100.0 7.3E-45 1.6E-49 359.3 21.6 207 23-267 310-525 (533)
17 cd03336 TCP1_beta TCP-1 (CTT o 100.0 2E-44 4.4E-49 355.0 23.8 206 25-268 300-514 (517)
18 TIGR02341 chap_CCT_beta T-comp 100.0 1.9E-44 4.1E-49 355.4 23.5 212 20-269 296-516 (519)
19 TIGR02345 chap_CCT_eta T-compl 100.0 1.7E-44 3.8E-49 355.8 22.8 229 2-269 284-521 (522)
20 cd03341 TCP1_theta TCP-1 (CTT 100.0 2.5E-44 5.4E-49 350.8 22.1 209 22-267 252-471 (472)
21 cd03335 TCP1_alpha TCP-1 (CTT 100.0 1.3E-44 2.9E-49 357.0 20.0 212 22-269 295-527 (527)
22 TIGR02342 chap_CCT_delta T-com 100.0 1.7E-44 3.6E-49 355.6 20.6 209 22-267 299-516 (517)
23 cd03340 TCP1_eta TCP-1 (CTT or 100.0 4.1E-44 9E-49 353.1 22.3 229 2-269 283-521 (522)
24 cd03338 TCP1_delta TCP-1 (CTT 100.0 2.6E-44 5.7E-49 353.9 20.8 208 22-266 298-514 (515)
25 TIGR02344 chap_CCT_gamma T-com 100.0 3.3E-44 7.1E-49 354.0 21.3 210 22-269 303-523 (525)
26 TIGR02346 chap_CCT_theta T-com 100.0 4.4E-44 9.6E-49 353.6 22.2 208 24-268 302-520 (531)
27 cd03343 cpn60 cpn60 chaperonin 100.0 3.2E-44 7E-49 353.3 21.1 209 21-267 299-516 (517)
28 cd03339 TCP1_epsilon TCP-1 (CT 100.0 4.7E-44 1E-48 353.0 21.2 208 21-266 307-526 (526)
29 TIGR02340 chap_CCT_alpha T-com 100.0 4.7E-44 1E-48 353.7 20.9 209 24-268 301-530 (536)
30 TIGR02339 thermosome_arch ther 100.0 1.4E-43 3E-48 349.1 21.6 208 21-266 302-518 (519)
31 TIGR02343 chap_CCT_epsi T-comp 100.0 2.5E-43 5.4E-48 348.3 21.2 211 18-266 308-530 (532)
32 cd03337 TCP1_gamma TCP-1 (CTT 100.0 4.3E-43 9.3E-48 342.8 18.9 209 20-266 260-479 (480)
33 cd00309 chaperonin_type_I_II c 100.0 6.2E-42 1.4E-46 332.9 22.4 204 25-266 252-464 (464)
34 KOG0361 Chaperonin complex com 100.0 5.2E-41 1.1E-45 310.7 12.7 204 29-270 313-525 (543)
35 PF00118 Cpn60_TCP1: TCP-1/cpn 100.0 6.5E-39 1.4E-43 311.3 18.3 214 17-268 261-484 (485)
36 KOG0357 Chaperonin complex com 100.0 8.9E-40 1.9E-44 297.9 9.1 215 18-270 172-398 (400)
37 KOG0363 Chaperonin complex com 100.0 1.9E-37 4.2E-42 285.6 14.6 208 23-268 303-519 (527)
38 KOG0358 Chaperonin complex com 100.0 5E-36 1.1E-40 277.3 11.4 205 25-266 318-532 (534)
39 KOG0359 Chaperonin complex com 100.0 7E-33 1.5E-37 259.5 18.6 214 18-269 296-516 (520)
40 KOG0364 Chaperonin complex com 100.0 6.1E-34 1.3E-38 266.9 9.9 213 22-272 303-525 (527)
41 KOG0360 Chaperonin complex com 100.0 4.9E-33 1.1E-37 262.7 12.0 219 16-271 300-539 (545)
42 KOG0362 Chaperonin complex com 100.0 6.8E-29 1.5E-33 235.8 14.0 208 25-269 306-522 (537)
43 cd03333 chaperonin_like chaper 99.5 2.8E-14 6E-19 125.0 9.8 92 24-152 115-209 (209)
44 cd03334 Fab1_TCP TCP-1 like do 99.5 6.1E-14 1.3E-18 127.6 9.0 96 22-153 151-254 (261)
45 KOG0230 Phosphatidylinositol-4 94.7 0.035 7.7E-07 60.6 4.5 98 29-163 472-578 (1598)
46 smart00574 POX domain associat 66.6 22 0.00047 29.7 6.2 57 101-170 68-125 (140)
47 PF07526 POX: Associated with 52.4 44 0.00094 27.8 5.8 58 101-171 68-126 (140)
48 PF08988 DUF1895: Protein of u 43.5 29 0.00063 25.3 3.0 54 93-148 5-58 (68)
49 PRK13928 rod shape-determining 41.5 2.9E+02 0.0063 25.5 12.2 22 29-50 108-129 (336)
50 PLN02512 acetylglutamate kinas 37.2 79 0.0017 29.4 5.7 48 111-160 41-90 (309)
51 KOG2663 Acetolactate synthase, 32.1 47 0.001 30.6 3.1 27 120-147 121-147 (309)
52 cd00316 Oxidoreductase_nitroge 32.0 4.3E+02 0.0094 24.7 13.1 65 103-173 236-302 (399)
53 cd04250 AAK_NAGK-C AAK_NAGK-C: 31.1 1.3E+02 0.0027 27.4 5.9 49 112-162 9-59 (279)
54 PLN02825 amino-acid N-acetyltr 30.3 2.6E+02 0.0057 28.2 8.4 49 112-165 12-64 (515)
55 COG0459 GroL Chaperonin GroEL 28.8 21 0.00045 36.0 0.3 55 23-79 277-331 (524)
56 CHL00202 argB acetylglutamate 27.5 1.6E+02 0.0036 26.9 6.0 55 111-167 17-73 (284)
57 PRK14736 atpC F0F1 ATP synthas 27.3 2.2E+02 0.0049 23.2 6.2 53 64-116 67-125 (133)
58 PF04864 Alliinase_C: Allinase 26.8 28 0.0006 33.4 0.8 53 112-164 14-79 (363)
59 PF10805 DUF2730: Protein of u 25.2 1.4E+02 0.003 23.4 4.4 36 84-119 46-81 (106)
60 cd04240 AAK_UC AAK_UC: Unchara 22.1 1E+02 0.0022 26.8 3.4 15 153-167 28-45 (203)
61 cd04255 AAK_UMPK-MosAB AAK_UMP 21.0 5.4E+02 0.012 23.3 8.0 47 115-163 28-77 (262)
62 KOG3633 BAG family molecular c 21.0 3.9E+02 0.0084 23.4 6.5 70 83-153 52-143 (219)
63 PF14252 DUF4347: Domain of un 20.1 99 0.0021 26.3 2.8 28 23-50 99-126 (165)
No 1
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=3.5e-58 Score=454.98 Aligned_cols=251 Identities=38% Similarity=0.597 Sum_probs=239.7
Q ss_pred CcEEEEcCCCcccchhhhcccchhhhhhhhhhhHHHHHHHHhCCeEecccCC---CCCCCCCceecceEEEccCcEEEEc
Q 024036 1 MKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAILTGGRVVTAASN---SLYIPLMLGSCKKVKVTNNEMIIHG 77 (273)
Q Consensus 1 ~~~~av~~p~~g~~~~~~~~~~~~~~~~~~~k~~ledia~~tG~~iv~~~~~---~~~~~~~LG~a~~v~~~~~~~~~i~ 77 (273)
++++|||+|+|| +.++++|+|||++|||+++++..+ +++++++||+|++|+++++++++++
T Consensus 271 ~~i~av~~~~~~----------------~~r~~~l~~ia~~tGa~~i~~~~~~~l~~~~~~~lG~~~~v~~~~~~~~~i~ 334 (545)
T PRK12852 271 LKVAAVKAPGFG----------------DRRKAMLEDIAILTGGQLISEDLGIKLENVTLKMLGRAKKVVIDKENTTIVN 334 (545)
T ss_pred ceEEEEecCCcc----------------cchHhHHHHHHHhcCCEEEecCcCCCcCCCCHHHCCCCcEEEEEccEEEEEe
Confidence 369999999999 999999999999999999995322 8888899999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhcCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCcccc
Q 024036 78 GSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEGIIPG 157 (273)
Q Consensus 78 g~~~~~~i~~ri~~l~~~i~~~~s~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~l~DAl~a~r~al~~gvVpG 157 (273)
+++++..+..|+++|+.+++++.+.|++++|+||+++|+++++||+|||+|+++++|+||+++||+|++|+++++|||||
T Consensus 335 ~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~R~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~a~~~a~~~g~VpG 414 (545)
T PRK12852 335 GAGKKADIEARVGQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVEDALNATRAAVQEGIVPG 414 (545)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHhccCCCChhHHHHHHHHHHHHhHHHHHHHHhcCCCHH-HHHHHHcCCCCCeeeeCCCCcccchhhcCc
Q 024036 158 GGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQENPDLEYDPPRDEYVDAVKSAI 236 (273)
Q Consensus 158 GGaael~~s~~L~~~~~~~~~~q~gi~~~a~AL~~pp~~La~NaG~d~~-vv~kl~~~~~~~~G~d~~~g~~~Dm~~~GI 236 (273)
||++|+++|.+|+++...++++|+|+++|++||++||++||+|||+|+. ++++|++.+++++|||+.+|+++||++.||
T Consensus 415 GGa~e~~~s~~L~~~~~~~~~~q~~i~~~a~AL~~ip~~La~NaG~d~~~vl~~l~~~~~~~~G~d~~~g~~~d~~~~GI 494 (545)
T PRK12852 415 GGVALLRAKKAVGRINNDNADVQAGINIVLKALEAPIRQIAENAGVEGSIVVGKILENKSETFGFDAQTEEYVDMVAKGI 494 (545)
T ss_pred chHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcCCCeeEeCcCCCcccHHhCcC
Confidence 9999999999999987667889999999999999999999999999999 999998866678999999999999999999
Q ss_pred ccCchHHHHHHHHHHHHHHHHHHhhHHHhhcc
Q 024036 237 VDPPLKLIRNELDDAVSYFVSRWCSTEKLQRQ 268 (273)
Q Consensus 237 ~DP~~~Vk~~al~~A~~~A~~lL~~~e~i~~~ 268 (273)
||| +.||+++|++|+++|++||.+|++|...
T Consensus 495 ~Dp-~~vk~~al~~A~e~a~~iL~id~iI~~~ 525 (545)
T PRK12852 495 IDP-AKVVRTALQDAASVAGLLVTTEAMVAEL 525 (545)
T ss_pred CcC-hHHHHHHHHHHHHHHHHHHhHHHHhhcC
Confidence 999 9999999999999999999999988743
No 2
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1.5e-57 Score=449.91 Aligned_cols=252 Identities=39% Similarity=0.583 Sum_probs=238.9
Q ss_pred CcEEEEcCCCcccchhhhcccchhhhhhhhhhhHHHHHHHHhCCeEecccCC---CCCCCCCceecceEEEccCcEEEEc
Q 024036 1 MKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAILTGGRVVTAASN---SLYIPLMLGSCKKVKVTNNEMIIHG 77 (273)
Q Consensus 1 ~~~~av~~p~~g~~~~~~~~~~~~~~~~~~~k~~ledia~~tG~~iv~~~~~---~~~~~~~LG~a~~v~~~~~~~~~i~ 77 (273)
++++|||.|+|| +.++++|+|||++||++++++..+ +++++++||+|+.|+++++++++++
T Consensus 270 ~~i~avr~~~~~----------------~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~ 333 (542)
T PRK00013 270 LKVVAVKAPGFG----------------DRRKAMLEDIAILTGGTVISEELGLKLEDATLEDLGQAKKVVVTKDNTTIVD 333 (542)
T ss_pred ceEEEEecCCcc----------------cchhhhHHHHHHHcCCEEecccccCCcccCCHHHCCeeeEEEEecCEEEEEe
Confidence 359999999999 999999999999999999995322 8888899999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhcCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCcccc
Q 024036 78 GSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEGIIPG 157 (273)
Q Consensus 78 g~~~~~~i~~ri~~l~~~i~~~~s~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~l~DAl~a~r~al~~gvVpG 157 (273)
++++++.+..|+++|+.+++.+.++|++++|+||+++|+|+++||+|||+|+++++|++|+++||||++|+++++|+|||
T Consensus 334 ~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eRi~~l~g~~~tI~irG~t~~~l~E~er~i~Dal~~vk~al~~g~VpG 413 (542)
T PRK00013 334 GAGDKEAIKARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEGIVPG 413 (542)
T ss_pred CCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHhccCCCChhHHHHHHHHHHHHhHHHHHHHHhcCCCHH-HHHHHHcCCCCCeeeeCCCCcccchhhcCc
Q 024036 158 GGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQENPDLEYDPPRDEYVDAVKSAI 236 (273)
Q Consensus 158 GGaael~~s~~L~~~~~~~~~~q~gi~~~a~AL~~pp~~La~NaG~d~~-vv~kl~~~~~~~~G~d~~~g~~~Dm~~~GI 236 (273)
||++|+++|.+|+++...++++|+|+++|++||+.||++||+|||+|+. ++++|++.+++++|||+.+|++.||++.||
T Consensus 414 GGa~e~~~s~~L~~~~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~vl~~l~~~~~~~~G~d~~~g~~~d~~~~gI 493 (542)
T PRK00013 414 GGVALLRAAPALEALKGLNGDEATGINIVLRALEAPLRQIAENAGLEGSVVVEKVKNGKGKGYGYNAATGEYVDMIEAGI 493 (542)
T ss_pred cHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcCCCEeEeCCCCceeehhhccC
Confidence 9999999999999884348899999999999999999999999999999 999998866678999999999999999999
Q ss_pred ccCchHHHHHHHHHHHHHHHHHHhhHHHhhccC
Q 024036 237 VDPPLKLIRNELDDAVSYFVSRWCSTEKLQRQK 269 (273)
Q Consensus 237 ~DP~~~Vk~~al~~A~~~A~~lL~~~e~i~~~~ 269 (273)
||| +.||+++|++|+++|++||.+|++|....
T Consensus 494 ~Dp-~~vk~~al~~A~~~a~~iL~id~iI~~~~ 525 (542)
T PRK00013 494 IDP-TKVTRSALQNAASVAGLLLTTEAVVADKP 525 (542)
T ss_pred eec-HHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999 99999999999999999999999887643
No 3
>PRK14104 chaperonin GroEL; Provisional
Probab=100.00 E-value=2.6e-57 Score=448.59 Aligned_cols=250 Identities=38% Similarity=0.588 Sum_probs=239.2
Q ss_pred CcEEEEcCCCcccchhhhcccchhhhhhhhhhhHHHHHHHHhCCeEecccCC---CCCCCCCceecceEEEccCcEEEEc
Q 024036 1 MKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAILTGGRVVTAASN---SLYIPLMLGSCKKVKVTNNEMIIHG 77 (273)
Q Consensus 1 ~~~~av~~p~~g~~~~~~~~~~~~~~~~~~~k~~ledia~~tG~~iv~~~~~---~~~~~~~LG~a~~v~~~~~~~~~i~ 77 (273)
++|||||+|+|| +.++++|+|||++|||+++++..+ +++++++||+|+++++++++++++.
T Consensus 271 ~~i~av~~~~~g----------------~~r~~~l~~ia~~tG~~~i~~~~~~~l~~~~~~~LG~a~~v~~~~~~~~~i~ 334 (546)
T PRK14104 271 LKVAAVKAPGFG----------------DRRKAMLQDIAILTGGQAISEDLGIKLENVTLQMLGRAKKVMIDKENTTIVN 334 (546)
T ss_pred eeEEEEeccCCC----------------cchHHHHHHHHHHhCCEEEecCCCCCcCcCCHHHCCceeEEEEcCCEEEEEe
Confidence 368999999999 999999999999999999999432 8888899999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhcCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCcccc
Q 024036 78 GSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEGIIPG 157 (273)
Q Consensus 78 g~~~~~~i~~ri~~l~~~i~~~~s~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~l~DAl~a~r~al~~gvVpG 157 (273)
+++++..+..|+++|+.+++++.++|++++|+||+++|+++++||+|||+|+++++|++|+++||+|++++++++|||||
T Consensus 335 g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eRi~~l~~~~atI~irG~t~~~l~e~~r~i~Dal~a~~~ai~~g~VpG 414 (546)
T PRK14104 335 GAGKKADIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEGIVPG 414 (546)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCcCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHhccCCCChhHHHHHHHHHHHHhHHHHHHHHhcCCCHH-HHHHHHcCCCCCeeeeCCCCcccchhhcCc
Q 024036 158 GGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQENPDLEYDPPRDEYVDAVKSAI 236 (273)
Q Consensus 158 GGaael~~s~~L~~~~~~~~~~q~gi~~~a~AL~~pp~~La~NaG~d~~-vv~kl~~~~~~~~G~d~~~g~~~Dm~~~GI 236 (273)
||++|+++|..|+++...++++|+|+++|++||+.||++||+|||+|+. ++.+|++.+.+++|||+.+|++.||++.||
T Consensus 415 GGa~e~~~s~~L~~~~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~v~~~l~~~~~~~~G~d~~~g~~~d~~~~GI 494 (546)
T PRK14104 415 GGVALLRASEQLKGIKTKNDDQKTGVEIVRKALSAPARQIAINAGEDGSVIVGKILEKEQYSYGFDSQTGEYGNLVSKGI 494 (546)
T ss_pred chHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhhHHHHHHhCCCCHHHHHHHHHhcCCCcEeEeCCCCceeehHhcCC
Confidence 9999999999999885558899999999999999999999999999999 999998765667999999999999999999
Q ss_pred ccCchHHHHHHHHHHHHHHHHHHhhHHHhhc
Q 024036 237 VDPPLKLIRNELDDAVSYFVSRWCSTEKLQR 267 (273)
Q Consensus 237 ~DP~~~Vk~~al~~A~~~A~~lL~~~e~i~~ 267 (273)
||| +.||+++|++|+++|++||.+|++|..
T Consensus 495 ~Dp-~~vk~~al~~A~~~a~~iL~id~~I~~ 524 (546)
T PRK14104 495 IDP-TKVVRTAIQNAASVAALLITTEAMVAE 524 (546)
T ss_pred EEc-HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999 999999999999999999999999865
No 4
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=3e-57 Score=448.03 Aligned_cols=250 Identities=39% Similarity=0.597 Sum_probs=237.9
Q ss_pred CcEEEEcCCCcccchhhhcccchhhhhhhhhhhHHHHHHHHhCCeEecccCC---CCCCCCCceecceEEEccCcEEEEc
Q 024036 1 MKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAILTGGRVVTAASN---SLYIPLMLGSCKKVKVTNNEMIIHG 77 (273)
Q Consensus 1 ~~~~av~~p~~g~~~~~~~~~~~~~~~~~~~k~~ledia~~tG~~iv~~~~~---~~~~~~~LG~a~~v~~~~~~~~~i~ 77 (273)
++++|||.|+|| +.++++|+|||++|||+++++..+ +++++++||+|++|+++++++++++
T Consensus 271 ~~~~avk~p~~g----------------~~~~~~le~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~ 334 (544)
T PRK12850 271 LKSVAVKAPGFG----------------DRRKAMLEDIAVLTGGQVISEDLGIKLENVTLDMLGRAKRVLITKENTTIID 334 (544)
T ss_pred ceEEEEeCCCcC----------------cccHHHHHHHHHHhCCEEeccccCCCcccCCHHHcCCCcEEEEEeeeEEEEe
Confidence 478999999999 999999999999999999995321 8888899999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhcCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCcccc
Q 024036 78 GSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEGIIPG 157 (273)
Q Consensus 78 g~~~~~~i~~ri~~l~~~i~~~~s~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~l~DAl~a~r~al~~gvVpG 157 (273)
++++++.+..|+++|+++++++.+.|++++|+||+++|+|+++||+|||+|+++++|++|+++||||++|+++++|||||
T Consensus 335 g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~~~k~a~~~g~VpG 414 (544)
T PRK12850 335 GAGDKKNIEARVKQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVDDALHATRAAVEEGIVPG 414 (544)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcCCeEEEEECCCcHHHHHHHHHHHHHHHHHHHHHHhcCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHhccCCCChhHHHHHHHHHHHHhHHHHHHHHhcCCCHH-HHHHHHcCCCCCeeeeCCCCcccchhhcCc
Q 024036 158 GGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQENPDLEYDPPRDEYVDAVKSAI 236 (273)
Q Consensus 158 GGaael~~s~~L~~~~~~~~~~q~gi~~~a~AL~~pp~~La~NaG~d~~-vv~kl~~~~~~~~G~d~~~g~~~Dm~~~GI 236 (273)
||++|+++|..|+++...++++|+|+++|++||+.||++||+|||+|+. ++++|++.+ .++|||+.+|++.||++.||
T Consensus 415 GGa~e~~~s~~L~~~~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~v~~~l~~~~-~~~G~d~~~g~~~d~~~~gI 493 (544)
T PRK12850 415 GGVALLRARSALRGLKGANADETAGIDIVRRALEEPLRQIATNAGFEGSVVVGKVAELP-GNFGFNAQTGEYGDMVEAGI 493 (544)
T ss_pred CcHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhC-CCcceeCCCCcccchhhccC
Confidence 9999999999999984448999999999999999999999999999999 999998765 57899999999999999999
Q ss_pred ccCchHHHHHHHHHHHHHHHHHHhhHHHhhcc
Q 024036 237 VDPPLKLIRNELDDAVSYFVSRWCSTEKLQRQ 268 (273)
Q Consensus 237 ~DP~~~Vk~~al~~A~~~A~~lL~~~e~i~~~ 268 (273)
||| +.||.++|++|+++|++||.+|++|...
T Consensus 494 ~Dp-~~vk~~al~~A~~~a~~iL~id~iI~~~ 524 (544)
T PRK12850 494 IDP-AKVTRTALQDAASIAALLITTEAMVAEA 524 (544)
T ss_pred ccc-HHHHHHHHHHHHHHHHHHHhHHHhhccC
Confidence 999 9999999999999999999999988765
No 5
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=4e-57 Score=446.90 Aligned_cols=251 Identities=38% Similarity=0.593 Sum_probs=239.2
Q ss_pred CcEEEEcCCCcccchhhhcccchhhhhhhhhhhHHHHHHHHhCCeEecccCC---CCCCCCCceecceEEEccCcEEEEc
Q 024036 1 MKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAILTGGRVVTAASN---SLYIPLMLGSCKKVKVTNNEMIIHG 77 (273)
Q Consensus 1 ~~~~av~~p~~g~~~~~~~~~~~~~~~~~~~k~~ledia~~tG~~iv~~~~~---~~~~~~~LG~a~~v~~~~~~~~~i~ 77 (273)
++++|||.|+|| ++++++|+|||.+|||+++++..+ +++++++||+|++|+++++++++++
T Consensus 270 ~~i~avr~~~~~----------------~~r~~~l~~ia~~tGa~~v~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~ 333 (542)
T PRK12849 270 LKVAAVKAPGFG----------------DRRKAMLEDIAILTGGTVISEDLGLKLEEVTLDDLGRAKRVTITKDNTTIVD 333 (542)
T ss_pred ccEEEEeCCCcc----------------chhHhHHHHHHHHhCCEEecccccCCcccCCHHHCceeeEEEEeeeeEEEEe
Confidence 379999999999 999999999999999999996322 8888899999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhcCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCcccc
Q 024036 78 GSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEGIIPG 157 (273)
Q Consensus 78 g~~~~~~i~~ri~~l~~~i~~~~s~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~l~DAl~a~r~al~~gvVpG 157 (273)
++++++.+..|+++|+++++++.++|++++|+||+++|+|+++||+|||+|+++++|++|+++||||++|+++++|||||
T Consensus 334 g~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~er~i~DAl~~~~~a~~~g~VpG 413 (542)
T PRK12849 334 GAGDKEAIEARVAQIRRQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVELKERKDRVEDALNATRAAVEEGIVPG 413 (542)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcCeecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHhccCCCChhHHHHHHHHHHHHhHHHHHHHHhcCCCHH-HHHHHHcCCCCCeeeeCCCCcccchhhcCc
Q 024036 158 GGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQENPDLEYDPPRDEYVDAVKSAI 236 (273)
Q Consensus 158 GGaael~~s~~L~~~~~~~~~~q~gi~~~a~AL~~pp~~La~NaG~d~~-vv~kl~~~~~~~~G~d~~~g~~~Dm~~~GI 236 (273)
||++|+++|..|++++..++++|+|+++|++||++||++||+|||+|+. ++.+|++.+ +++|||+.+|++.||++.||
T Consensus 414 GGa~e~~ls~~L~~~~~~~g~~~~~i~~~a~Al~~ip~~La~NaG~d~~~vi~~L~~~~-~~~G~d~~~g~~~d~~~~GV 492 (542)
T PRK12849 414 GGVALLRAAKALDELAGLNGDQAAGVEIVRRALEAPLRQIAENAGLDGSVVVAKVLELE-DGFGFNAATGEYGDLIAAGI 492 (542)
T ss_pred CCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhhC-CCcceeCCCCccccHHhccC
Confidence 9999999999999988448999999999999999999999999999999 999998875 57999999999999999999
Q ss_pred ccCchHHHHHHHHHHHHHHHHHHhhHHHhhccC
Q 024036 237 VDPPLKLIRNELDDAVSYFVSRWCSTEKLQRQK 269 (273)
Q Consensus 237 ~DP~~~Vk~~al~~A~~~A~~lL~~~e~i~~~~ 269 (273)
||| +.||.++|++|+++|++||.+|++|....
T Consensus 493 ~Dp-~~vk~~al~~A~e~A~~iL~id~iI~~~~ 524 (542)
T PRK12849 493 IDP-VKVTRSALQNAASVAGLLLTTEALVADKP 524 (542)
T ss_pred ccC-HHHHHHHHHHHHHHHHHHHhHHHHHhcCC
Confidence 999 99999999999999999999999887643
No 6
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=3.2e-57 Score=447.61 Aligned_cols=250 Identities=37% Similarity=0.571 Sum_probs=238.2
Q ss_pred CcEEEEcCCCcccchhhhcccchhhhhhhhhhhHHHHHHHHhCCeEecccCC---CCCCCCCceecceEEEccCcEEEEc
Q 024036 1 MKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAILTGGRVVTAASN---SLYIPLMLGSCKKVKVTNNEMIIHG 77 (273)
Q Consensus 1 ~~~~av~~p~~g~~~~~~~~~~~~~~~~~~~k~~ledia~~tG~~iv~~~~~---~~~~~~~LG~a~~v~~~~~~~~~i~ 77 (273)
++|||||.|+|| +.++++|+|||++|||+++++..+ +++++++||+|++|+++++++++++
T Consensus 271 ~~i~av~~p~~~----------------~~~~~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~ 334 (541)
T PRK12851 271 LKVAAVKAPGFG----------------DRRKAMLEDIAILTGGTVISEDLGIKLENVTLEQLGRAKKVVVEKENTTIID 334 (541)
T ss_pred eeEEEEecCccc----------------cccHhHHHHHHHHhCCEEeccCCCCCcCcCCHHHcCCccEEEEEcceEEEEc
Confidence 468999999999 999999999999999999995321 7888899999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhcCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCcccc
Q 024036 78 GSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEGIIPG 157 (273)
Q Consensus 78 g~~~~~~i~~ri~~l~~~i~~~~s~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~l~DAl~a~r~al~~gvVpG 157 (273)
++++++++..|+++|+++++.+.++|++++|+||+++|+|+++||+|||+|+++++|++|+++||||++|+++++|||||
T Consensus 335 ~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~ri~~l~g~~~tI~irG~t~~~l~E~er~i~DAl~a~~~al~~g~VpG 414 (541)
T PRK12851 335 GAGSKTEIEGRVAQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGASTEVEVKEKKDRVDDALHATRAAVEEGIVPG 414 (541)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHhccCCCChhHHHHHHHHHHHHhHHHHHHHHhcCCCHH-HHHHHHcCCCCCeeeeCCCCcccchhhcCc
Q 024036 158 GGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQENPDLEYDPPRDEYVDAVKSAI 236 (273)
Q Consensus 158 GGaael~~s~~L~~~~~~~~~~q~gi~~~a~AL~~pp~~La~NaG~d~~-vv~kl~~~~~~~~G~d~~~g~~~Dm~~~GI 236 (273)
||++|+++|..|+++...++++|+|+++|++||+.||++||+|||+|+. ++.+|++.+ .++|||+.+|+++||++.||
T Consensus 415 GGa~e~~~s~~L~~~~~~~~~~~~~~~~~a~AL~~ip~~La~NaG~d~~~vl~~l~~~~-~~~G~d~~~g~~~d~~~~GI 493 (541)
T PRK12851 415 GGVALLRAVKALDKLETANGDQRTGVEIVRRALEAPVRQIAENAGAEGSVVVGKLREKP-GGYGFNAATNEYGDLYAQGV 493 (541)
T ss_pred chHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhC-CCeeeeCCCCCccchhhccC
Confidence 9999999999999887668899999999999999999999999999999 999998875 47999999999999999999
Q ss_pred ccCchHHHHHHHHHHHHHHHHHHhhHHHhhcc
Q 024036 237 VDPPLKLIRNELDDAVSYFVSRWCSTEKLQRQ 268 (273)
Q Consensus 237 ~DP~~~Vk~~al~~A~~~A~~lL~~~e~i~~~ 268 (273)
||| +.||.++|++|+++|++||.+|++|..+
T Consensus 494 iDp-~~vk~~al~~A~e~A~~iL~id~iI~~~ 524 (541)
T PRK12851 494 IDP-VKVVRTALQNAASVAGLLLTTEAMVAEK 524 (541)
T ss_pred Eec-HHHHHHHHHHHHHHHHHHHhHHHhhhcC
Confidence 999 9999999999999999999999988764
No 7
>PTZ00114 Heat shock protein 60; Provisional
Probab=100.00 E-value=8.4e-57 Score=445.89 Aligned_cols=250 Identities=43% Similarity=0.684 Sum_probs=238.1
Q ss_pred cEEEEcCCCcccchhhhcccchhhhhhhhhhhHHHHHHHHhCCeEeccc-CC---CCCCCCCceecceEEEccCcEEEEc
Q 024036 2 KLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAILTGGRVVTAA-SN---SLYIPLMLGSCKKVKVTNNEMIIHG 77 (273)
Q Consensus 2 ~~~av~~p~~g~~~~~~~~~~~~~~~~~~~k~~ledia~~tG~~iv~~~-~~---~~~~~~~LG~a~~v~~~~~~~~~i~ 77 (273)
+++|||.|+|| +.++++|+|||++|||+++++. .+ +++++++||+|++|+++++++++++
T Consensus 283 ~i~avk~~~~g----------------~~~~~~l~~la~~tG~~~i~~~~~~~~l~~~~~~~LG~a~~v~~~~~~~~~~~ 346 (555)
T PTZ00114 283 KVCAVKAPGFG----------------DNRKDILQDIAVLTGATVVSEDNVGLKLDDFDPSMLGSAKKVTVTKDETVILT 346 (555)
T ss_pred EEEEEecCCCC----------------cchHHHHHHHHHHhCCEEecccccccCcccCCHHHcCCCceEEEEeceEEEEe
Confidence 59999999999 9999999999999999999996 32 6678889999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhcCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCcccc
Q 024036 78 GSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEGIIPG 157 (273)
Q Consensus 78 g~~~~~~i~~ri~~l~~~i~~~~s~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~l~DAl~a~r~al~~gvVpG 157 (273)
+++++..|+.|+++|+.+++.+.++|++++|+||+++|+++++||+|||+|+++++|++|+++||||++|+++++|||||
T Consensus 347 ~~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~i~G~t~~~l~E~~r~i~Dal~~~k~a~~~gvVpG 426 (555)
T PTZ00114 347 GGGDKAEIKERVELLRSQIERTTSEYDKEKLKERLAKLSGGVAVIKVGGASEVEVNEKKDRIEDALNATRAAVEEGIVPG 426 (555)
T ss_pred CCCcHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHhccCC---CChhHHHHHHHHHHHHhHHHHHHHHhcCCCHH-HHHHHHcCCCCCeeeeCCCCcccchhh
Q 024036 158 GGVALLHASEELEKLPA---MNIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQENPDLEYDPPRDEYVDAVK 233 (273)
Q Consensus 158 GGaael~~s~~L~~~~~---~~~~~q~gi~~~a~AL~~pp~~La~NaG~d~~-vv~kl~~~~~~~~G~d~~~g~~~Dm~~ 233 (273)
||++|+++|..|+++.. .++++|+|+++|++||++||++||+|||+|+. ++++|++.+++++|||+.+|++.||++
T Consensus 427 GGa~e~~~s~~L~~~~~~~~~~~~~~~~i~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~~~~~~~G~d~~~g~~~d~~~ 506 (555)
T PTZ00114 427 GGVALLRASKLLDKLEEDNELTPDQRTGVKIVRNALRLPTKQIAENAGVEGAVVVEKILEKKDPSFGYDAQTGEYVNMFE 506 (555)
T ss_pred CcHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCCEeEeCCCCcEeeHHh
Confidence 99999999999998764 36899999999999999999999999999999 999998755678999999999999999
Q ss_pred cCcccCchHHHHHHHHHHHHHHHHHHhhHHHhhcc
Q 024036 234 SAIVDPPLKLIRNELDDAVSYFVSRWCSTEKLQRQ 268 (273)
Q Consensus 234 ~GI~DP~~~Vk~~al~~A~~~A~~lL~~~e~i~~~ 268 (273)
.||||| +.||+++|++|+++|++||.+|++|...
T Consensus 507 ~GI~Dp-~~vk~~al~~A~~~A~~iL~id~iI~~~ 540 (555)
T PTZ00114 507 AGIIDP-TKVVRSALVDAASVASLMLTTEAAIVDL 540 (555)
T ss_pred CCCEeC-HHHHHHHHHHHHHHHHHHHhHHHHHHhC
Confidence 999999 9999999999999999999999988764
No 8
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=100.00 E-value=1.2e-56 Score=442.18 Aligned_cols=249 Identities=39% Similarity=0.590 Sum_probs=236.0
Q ss_pred CcEEEEcCCCcccchhhhcccchhhhhhhhhhhHHHHHHHHhCCeEecccCC---CCCCCCCceecceEEEccCcEEEEc
Q 024036 1 MKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAILTGGRVVTAASN---SLYIPLMLGSCKKVKVTNNEMIIHG 77 (273)
Q Consensus 1 ~~~~av~~p~~g~~~~~~~~~~~~~~~~~~~k~~ledia~~tG~~iv~~~~~---~~~~~~~LG~a~~v~~~~~~~~~i~ 77 (273)
++++|||.|+|| +.++++|+|||++|||+++++..+ +++++++||+|++|+++++++++++
T Consensus 269 ~~i~avr~~~~~----------------~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~ 332 (524)
T TIGR02348 269 LNVCAVKAPGFG----------------DRRKAMLEDIAILTGGQVISEELGLKLEEVTLDDLGKAKKVTVDKDNTTIVE 332 (524)
T ss_pred cceEEEECCCcc----------------chhhhhHHHHHHHhCCEEecccccCCcCcCCHHHCCCceEEEEeecEEEEEc
Confidence 378999999999 999999999999999999994321 8888899999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhcCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCcccc
Q 024036 78 GSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEGIIPG 157 (273)
Q Consensus 78 g~~~~~~i~~ri~~l~~~i~~~~s~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~l~DAl~a~r~al~~gvVpG 157 (273)
++++++.+..|+++|+++++++.++|++++|+||+++|+|+++||+|||+|+++++|++|+++||+|++|+++++|||||
T Consensus 333 ~~~~~~~~~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~Dal~~~r~a~~~g~VpG 412 (524)
T TIGR02348 333 GAGDKAAIKARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATETEMKEKKLRVEDALNATRAAVEEGIVPG 412 (524)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHhccCCCChhHHHHHHHHHHHHhHHHHHHHHhcCCCHH-HHHHHHcCCCCCeeeeCCCCcccchhhcCc
Q 024036 158 GGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQENPDLEYDPPRDEYVDAVKSAI 236 (273)
Q Consensus 158 GGaael~~s~~L~~~~~~~~~~q~gi~~~a~AL~~pp~~La~NaG~d~~-vv~kl~~~~~~~~G~d~~~g~~~Dm~~~GI 236 (273)
||++||++|..|++....++++|+|+++|++||++||++||+|||+|+. ++++|++.. .++|||+.+|++.||++.||
T Consensus 413 GGa~e~~~s~~L~~~~~~~~~~~~~~~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~~~-~~~G~d~~~g~~~d~~~~gI 491 (524)
T TIGR02348 413 GGVALLRAAAALEGLKGDNEDEAIGIDIVKRALEAPLRQIAENAGKDGAVVAEKVKESK-GNFGFNAATGEYEDLVEAGI 491 (524)
T ss_pred CcHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhcC-CCeeEeCcCCcccchhhccC
Confidence 9999999999999843347899999999999999999999999999999 999998763 35999999999999999999
Q ss_pred ccCchHHHHHHHHHHHHHHHHHHhhHHHhhc
Q 024036 237 VDPPLKLIRNELDDAVSYFVSRWCSTEKLQR 267 (273)
Q Consensus 237 ~DP~~~Vk~~al~~A~~~A~~lL~~~e~i~~ 267 (273)
||| +.||.++|++|+++|++||.+|++|..
T Consensus 492 ~Dp-~~vk~~al~~A~~~a~~iL~id~ii~~ 521 (524)
T TIGR02348 492 IDP-TKVTRSALQNAASIAGLLLTTEAVVAD 521 (524)
T ss_pred EEc-HHHHHHHHHHHHHHHHHHHhHHHHhhc
Confidence 999 999999999999999999999999875
No 9
>CHL00093 groEL chaperonin GroEL
Probab=100.00 E-value=1.8e-56 Score=441.46 Aligned_cols=247 Identities=37% Similarity=0.583 Sum_probs=234.7
Q ss_pred cEEEEcCCCcccchhhhcccchhhhhhhhhhhHHHHHHHHhCCeEecccCC---CCCCCCCceecceEEEccCcEEEEcC
Q 024036 2 KLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAILTGGRVVTAASN---SLYIPLMLGSCKKVKVTNNEMIIHGG 78 (273)
Q Consensus 2 ~~~av~~p~~g~~~~~~~~~~~~~~~~~~~k~~ledia~~tG~~iv~~~~~---~~~~~~~LG~a~~v~~~~~~~~~i~g 78 (273)
++||||.|++| +.++++|+|||++|||+++++..+ +++++++||+|++|+++++++++++
T Consensus 272 ~i~avr~~~~~----------------~~~k~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~~~- 334 (529)
T CHL00093 272 NVVAVRAPGFG----------------DRRKAMLEDIAILTGGQVITEDAGLSLETIQLDLLGQARRIIVTKDSTTIIA- 334 (529)
T ss_pred eEEEEecCCCC----------------cchHHHHHHHHHhhCCEEecccccCCcCCCCHHHCCcceEEEEecCEEEEEe-
Confidence 78999999999 999999999999999999995322 8888899999999999999999998
Q ss_pred CCChhhHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhcCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCccccC
Q 024036 79 SGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEGIIPGG 158 (273)
Q Consensus 79 ~~~~~~i~~ri~~l~~~i~~~~s~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~l~DAl~a~r~al~~gvVpGG 158 (273)
.++++.+..|+++++++++.+.++|++++|+||+++|+|+++||+|||+|+++++|++|+++||+|++|+++++|+||||
T Consensus 335 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~eR~~~l~g~~~~I~irg~t~~~l~E~er~i~DAl~a~r~a~~~gvVpGG 414 (529)
T CHL00093 335 DGNEEQVKARCEQLRKQIEIADSSYEKEKLQERLAKLSGGVAVIKVGAATETEMKDKKLRLEDAINATKAAVEEGIVPGG 414 (529)
T ss_pred cCcHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCcccCC
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHhccCC--CChhHHHHHHHHHHHHhHHHHHHHHhcCCCHH-HHHHHHcCCCCCeeeeCCCCcccchhhcC
Q 024036 159 GVALLHASEELEKLPA--MNIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQENPDLEYDPPRDEYVDAVKSA 235 (273)
Q Consensus 159 Gaael~~s~~L~~~~~--~~~~~q~gi~~~a~AL~~pp~~La~NaG~d~~-vv~kl~~~~~~~~G~d~~~g~~~Dm~~~G 235 (273)
|++||++|..|+++.. .++++|+|+++|++||+.||++||+|||+|+. ++++|++.. .++|||+.+|+++||++.|
T Consensus 415 Ga~e~~~s~~L~~~~~~~~~g~~~~~i~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~~~-~~~G~d~~~g~~~d~~~~G 493 (529)
T CHL00093 415 GATLVHLSENLKTWAKNNLKEDELIGALIVARAILAPLKRIAENAGKNGSVIIEKVQEQD-FEIGYNAANNKFVNMYEAG 493 (529)
T ss_pred cHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHccC-CCEeEECCCCcccchHhcc
Confidence 9999999999999854 48999999999999999999999999999999 999998764 5899999999999999999
Q ss_pred cccCchHHHHHHHHHHHHHHHHHHhhHHHhhc
Q 024036 236 IVDPPLKLIRNELDDAVSYFVSRWCSTEKLQR 267 (273)
Q Consensus 236 I~DP~~~Vk~~al~~A~~~A~~lL~~~e~i~~ 267 (273)
|||| +.||.++|++|+++|++||++|++|..
T Consensus 494 I~Dp-~~vk~~al~~A~e~a~~iL~id~ii~~ 524 (529)
T CHL00093 494 IIDP-AKVTRSALQNAASIASMILTTECIIVD 524 (529)
T ss_pred CEEc-HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999 999999999999999999999998865
No 10
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=1.6e-56 Score=440.82 Aligned_cols=247 Identities=44% Similarity=0.677 Sum_probs=235.7
Q ss_pred CcEEEEcCCCcccchhhhcccchhhhhhhhhhhHHHHHHHHhCCeEecccCC---CCCCCCCceecceEEEccCcEEEEc
Q 024036 1 MKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAILTGGRVVTAASN---SLYIPLMLGSCKKVKVTNNEMIIHG 77 (273)
Q Consensus 1 ~~~~av~~p~~g~~~~~~~~~~~~~~~~~~~k~~ledia~~tG~~iv~~~~~---~~~~~~~LG~a~~v~~~~~~~~~i~ 77 (273)
+++||||.|++| +.++++|+|||.+|||+++++..+ +++++++||+|++|+++++++++++
T Consensus 268 ~~v~avk~~~~~----------------~~~~~~l~~la~~tGa~~~~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~ 331 (520)
T cd03344 268 LKVCAVKAPGFG----------------DRRKAMLEDIAILTGGTVISEELGLKLEDVTLEDLGRAKKVVVTKDDTTIIG 331 (520)
T ss_pred ceEEEEeCCCCC----------------cccHHHHHHHHHHhCCEEecccccCCcccCCHHHCCcceEEEEeeceEEEEe
Confidence 368999999999 999999999999999999995422 7888889999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhcCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCcccc
Q 024036 78 GSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEGIIPG 157 (273)
Q Consensus 78 g~~~~~~i~~ri~~l~~~i~~~~s~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~l~DAl~a~r~al~~gvVpG 157 (273)
+++++.+++.|+++|+++++.+.++|++++|+||+++|+|++|||+|||+|+++++|++|+++||+|++|+++++|+|||
T Consensus 332 ~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~~r~i~Dal~~~k~a~~~g~VpG 411 (520)
T cd03344 332 GAGDKAAIKARIAQIRKQIEETTSDYDKEKLQERLAKLSGGVAVIKVGGATEVELKEKKDRVEDALNATRAAVEEGIVPG 411 (520)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHhcCCCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHhccCCCChhHHHHHHHHHHHHhHHHHHHHHhcCCCHH-HHHHHHcCCCCCeeeeCCCCcccchhhcCc
Q 024036 158 GGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQENPDLEYDPPRDEYVDAVKSAI 236 (273)
Q Consensus 158 GGaael~~s~~L~~~~~~~~~~q~gi~~~a~AL~~pp~~La~NaG~d~~-vv~kl~~~~~~~~G~d~~~g~~~Dm~~~GI 236 (273)
||++||++|++|++++..++++|+|+++|++||+.||++||+|||+|+. ++++|++.++ ++|||+.+|++.||++.||
T Consensus 412 GGa~e~~~s~~L~~~~~~~~~~~~~~~~~a~Al~~ip~~La~NaG~d~~~vi~~l~~~~~-~~G~d~~~g~~~d~~~~gV 490 (520)
T cd03344 412 GGVALLRASPALDKLKALNGDEKLGIEIVRRALEAPLRQIAENAGVDGSVVVEKVLESPD-GFGYDAATGEYVDMIEAGI 490 (520)
T ss_pred CcHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhcC-CEeEECCCCcccchHhccC
Confidence 9999999999999987678899999999999999999999999999999 9999998765 8999999999999999999
Q ss_pred ccCchHHHHHHHHHHHHHHHHHHhhHHHh
Q 024036 237 VDPPLKLIRNELDDAVSYFVSRWCSTEKL 265 (273)
Q Consensus 237 ~DP~~~Vk~~al~~A~~~A~~lL~~~e~i 265 (273)
||| +.||.++|++|+++|++||.+|..|
T Consensus 491 ~Dp-~~vk~~~l~~A~~~a~~iL~id~~i 518 (520)
T cd03344 491 IDP-TKVVRSALQNAASVASLLLTTEALV 518 (520)
T ss_pred eec-HHHHHHHHHHHHHHHHHHHhhheEE
Confidence 999 9999999999999999998887655
No 11
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=100.00 E-value=1.2e-54 Score=432.89 Aligned_cols=251 Identities=34% Similarity=0.527 Sum_probs=235.9
Q ss_pred CcEEEEcCCCcccchhhhcccchhhhhhhhhhhHHHHHHHHhCCeEecccCC---CCCCCCCceecceEEEccCcEEEEc
Q 024036 1 MKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAILTGGRVVTAASN---SLYIPLMLGSCKKVKVTNNEMIIHG 77 (273)
Q Consensus 1 ~~~~av~~p~~g~~~~~~~~~~~~~~~~~~~k~~ledia~~tG~~iv~~~~~---~~~~~~~LG~a~~v~~~~~~~~~i~ 77 (273)
+++||||.|+|| +.++++|+|||++|||++++++.+ +++++++||+|++|+++++++++++
T Consensus 325 ~~i~aVk~p~~g----------------~~~~~~L~dia~~tGa~~i~~~~~~~l~~~~~~~LG~a~~v~~~~~~t~iig 388 (600)
T PLN03167 325 LKIAALKAPGFG----------------ERKSQYLDDIAILTGGTVIREEVGLSLDKVGKEVLGTAAKVVLTKDTTTIVG 388 (600)
T ss_pred ceEEEEEcccCC----------------cchHHHHHHHHHhhCCEEecccccCCcccCCHHHCceeeEEEEecccceeeC
Confidence 369999999999 999999999999999999995432 7888899999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhcCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCcccc
Q 024036 78 GSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEGIIPG 157 (273)
Q Consensus 78 g~~~~~~i~~ri~~l~~~i~~~~s~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~l~DAl~a~r~al~~gvVpG 157 (273)
+.+++..+++|+.+|+.+++.+.++|++++|++||++|++++++|+|||+|+.+++|+||+++||||++|+|+++|+|||
T Consensus 389 ~~~~~~~i~~r~~~i~~~~~~~~~~~~~~~l~~Ri~~l~g~~aiI~vgG~t~~~l~E~er~i~DAl~avk~ai~~gvVpG 468 (600)
T PLN03167 389 DGSTQEAVNKRVAQIKNLIEAAEQDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVG 468 (600)
T ss_pred CCccHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHhhcCCcEEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHhccCCC-Chh-HHHHHHHHHHHHhHHHHHHHHhcCCCHH-HHHHHHcCCCCCeeeeCCCCcccchhhc
Q 024036 158 GGVALLHASEELEKLPAM-NIG-EKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQENPDLEYDPPRDEYVDAVKS 234 (273)
Q Consensus 158 GGaael~~s~~L~~~~~~-~~~-~q~gi~~~a~AL~~pp~~La~NaG~d~~-vv~kl~~~~~~~~G~d~~~g~~~Dm~~~ 234 (273)
||++||++|.+|+++... .+. +.+|++++++||+.||++||+|||+|+. ++.+|+..+++++|||+.+|++.||++.
T Consensus 469 GGa~el~ls~~L~~~~~~~~~~eq~~g~~~~~~Al~~p~r~La~NAG~d~~~vv~~L~~~~~~~~G~d~~~g~~~dm~~~ 548 (600)
T PLN03167 469 GGCTLLRLASKVDAIKDTLENDEQKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSNDNPKFGYNAATGKYEDLMAA 548 (600)
T ss_pred HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHhcchhhhhhcCCCCHHHHHHHHHhcCCCCEeEeCCCCcCcchHhc
Confidence 999999999999987643 444 5577999999999999999999999999 9999986666789999999999999999
Q ss_pred CcccCchHHHHHHHHHHHHHHHHHHhhHHHhhcc
Q 024036 235 AIVDPPLKLIRNELDDAVSYFVSRWCSTEKLQRQ 268 (273)
Q Consensus 235 GI~DP~~~Vk~~al~~A~~~A~~lL~~~e~i~~~ 268 (273)
||||| ++||+++|++|+++|++||++|++|...
T Consensus 549 GI~Dp-~~Vk~~al~~A~~~A~~iL~iD~iI~~~ 581 (600)
T PLN03167 549 GIIDP-TKVVRCCLEHAASVAKTFLTSDCVVVEI 581 (600)
T ss_pred cCeec-HHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999 9999999999999999999999999865
No 12
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.5e-52 Score=397.17 Aligned_cols=244 Identities=43% Similarity=0.647 Sum_probs=233.4
Q ss_pred CcEEEEcCCCcccchhhhcccchhhhhhhhhhhHHHHHHHHhCCeEecccCC----CCCCCCCceecceEEEccCcEEEE
Q 024036 1 MKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAILTGGRVVTAASN----SLYIPLMLGSCKKVKVTNNEMIIH 76 (273)
Q Consensus 1 ~~~~av~~p~~g~~~~~~~~~~~~~~~~~~~k~~ledia~~tG~~iv~~~~~----~~~~~~~LG~a~~v~~~~~~~~~i 76 (273)
+||||||+|||| +.|++.|+|||.+||++++..+.+ ++.++++||.+.++.++++.+.++
T Consensus 284 lqV~AvKapgfG----------------dnrk~~l~Diai~Tg~~v~~~e~~~l~le~~~~~dLG~~~evvvtkd~t~ll 347 (550)
T KOG0356|consen 284 LQVVAVKAPGFG----------------DNRKNLLKDIAILTGATVFGEELSTLNLEDAKLEDLGEVGEVVVTKDDTMLL 347 (550)
T ss_pred eeEEEEecCCCc----------------chHHHhhhHHHHHhhhhhhccchhhcccccCchhhcCcceeEEEecCcceee
Confidence 589999999999 999999999999999999999854 677889999999999999999999
Q ss_pred cCCCChhhHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhcCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCccc
Q 024036 77 GGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEGIIP 156 (273)
Q Consensus 77 ~g~~~~~~i~~ri~~l~~~i~~~~s~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~l~DAl~a~r~al~~gvVp 156 (273)
.+.+++++++.||++++..++.+.++|++++|+||+++|+|++++|.+||.||.|++|++++++||||++++|+++|+||
T Consensus 348 ~g~~~~~~v~~rIeqik~~~e~t~~~ye~ekl~er~a~ls~gvavi~vGg~se~Ev~ekk~rv~dalnat~aaveeGivp 427 (550)
T KOG0356|consen 348 KGKGNKAQVEGRIEQIKEMIEETTSDYEKEKLNERLAKLSGGVAVIKVGGHSEVEVNEKKDRVEDALNATRAAVEEGIVP 427 (550)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHhcCCeEEEEecCcchhhhhhhhhhHHHHHHHHHHHhhcCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHHhccCCC-ChhHHHHHHHHHHHHhHHHHHHHHhcCCCHH-HHHHHHcCCCCCeeeeCCCCcccchhhc
Q 024036 157 GGGVALLHASEELEKLPAM-NIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQENPDLEYDPPRDEYVDAVKS 234 (273)
Q Consensus 157 GGGaael~~s~~L~~~~~~-~~~~q~gi~~~a~AL~~pp~~La~NaG~d~~-vv~kl~~~~~~~~G~d~~~g~~~Dm~~~ 234 (273)
|||+++++|++.|+++... +.+++.|++++.+||..|.++||+|||+|+. ++.|++. ..+|||..+++|+||++.
T Consensus 428 GGG~all~~~~~l~~lk~~~~~~~k~G~eiv~~Al~~P~~~IakNAGvdg~~vv~Kv~~---~~~gyda~~~ey~dlv~~ 504 (550)
T KOG0356|consen 428 GGGTALLRAIPVLDELKATNNFDQKVGVEIVKKALRLPAQTIAKNAGVDGSVVVEKVLN---DDYGYDAAKGEYVDLVEA 504 (550)
T ss_pred CCchHHHHhhhhhhhcccccchHhhhhHHHHHHHHhhhHHHHHHhcCCchHHHHHHHHh---hhhhhhhhcccHHHHHhc
Confidence 9999999999999998874 7889999999999999999999999999999 9999993 389999999999999999
Q ss_pred CcccCchHHHHHHHHHHHHHHHHHHhhHHHh
Q 024036 235 AIVDPPLKLIRNELDDAVSYFVSRWCSTEKL 265 (273)
Q Consensus 235 GI~DP~~~Vk~~al~~A~~~A~~lL~~~e~i 265 (273)
||+|| ++|.+.+|..|.++|++| +++|.+
T Consensus 505 GiidP-~kVvr~al~~a~~vasll-~tte~v 533 (550)
T KOG0356|consen 505 GIIDP-TKVVRTALTDAAGVASLL-TTTEAV 533 (550)
T ss_pred cCCCh-HHHHHHhhhhhhHHHHHH-hhheeE
Confidence 99999 999999999999999999 555554
No 13
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.4e-46 Score=366.04 Aligned_cols=221 Identities=18% Similarity=0.216 Sum_probs=199.7
Q ss_pred CcccchhhhcccchhhhhhhhhhhHHHHHHHHhCCeEecccCCCCCCCCCceecceE---EEccCcEEEEcCCCChhhHH
Q 024036 10 VFEESWKAVYGENCELVYEENCKAIMRDIAILTGGRVVTAASNSLYIPLMLGSCKKV---KVTNNEMIIHGGSGNQVYIE 86 (273)
Q Consensus 10 ~~g~~~~~~~~~~~~~~~~~~~k~~ledia~~tG~~iv~~~~~~~~~~~~LG~a~~v---~~~~~~~~~i~g~~~~~~i~ 86 (273)
++.+.-...+-+|--+|+++.++++|+|||++|||+++++. +++++++||+|++| ++++++++++++++++
T Consensus 254 ~I~~~al~~l~~~~I~av~~~~~~~l~~ia~~tGa~ii~~l--~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~---- 327 (484)
T cd03342 254 GIDPPSLDMLAKEGILALRRAKRRNMERLTLACGGVAMNSV--DDLSPECLGYAGLVYERTLGEEKYTFIEGVKNP---- 327 (484)
T ss_pred CccHHHHHHHHHCCCeEEEeCCHHHHHHHHHHhCCEEeccc--ccCChhhCcccceEEEEEECCeEEEEEECCCCC----
Confidence 33333333344555788999999999999999999999998 99999999999999 5678889999988653
Q ss_pred HHHHHHHHHHhhccCHHHHHHHHHHHHhhcCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-ccccCcHHHHHH
Q 024036 87 DRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEG-IIPGGGVALLHA 165 (273)
Q Consensus 87 ~ri~~l~~~i~~~~s~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~l~DAl~a~r~al~~g-vVpGGGaael~~ 165 (273)
+++||+|||+|+.+++|.||+++|||+++|+++++| +|||||++||++
T Consensus 328 -------------------------------~~~tI~lrg~t~~~l~E~er~l~DAl~~vk~~~~~~~~vpGGGa~e~~l 376 (484)
T cd03342 328 -------------------------------KSCTILIKGPNDHTITQIKDAIRDGLRAVKNAIEDKCVVPGAGAFEVAL 376 (484)
T ss_pred -------------------------------cEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHH
Confidence 579999999999999999999999999999999999 999999999999
Q ss_pred HHHHhccCCC-ChhHHHHHHHHHHHHhHHHHHHHHhcCCCHH-HHHHHHcC---CCCCeeeeCCCCcccchhhcCcccCc
Q 024036 166 SEELEKLPAM-NIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQ---ENPDLEYDPPRDEYVDAVKSAIVDPP 240 (273)
Q Consensus 166 s~~L~~~~~~-~~~~q~gi~~~a~AL~~pp~~La~NaG~d~~-vv~kl~~~---~~~~~G~d~~~g~~~Dm~~~GI~DP~ 240 (273)
|.+|++++.. ++++|+++++|++||+.||++||+|||+|+. ++.+|++. ++.++|||+.+|+++||++.|||||
T Consensus 377 s~~L~~~~~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gI~dp- 455 (484)
T cd03342 377 YAHLKEFKKSVKGKAKLGVQAFADALLVIPKTLAENSGLDVQETLVKLQDEYAEGGQVGGVDLDTGEPMDPESEGIWDN- 455 (484)
T ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCceeeeCCCCcccchhhcCcEEc-
Confidence 9999998654 8899999999999999999999999999999 99999853 4567999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHHhhcc
Q 024036 241 LKLIRNELDDAVSYFVSRWCSTEKLQRQ 268 (273)
Q Consensus 241 ~~Vk~~al~~A~~~A~~lL~~~e~i~~~ 268 (273)
+.||+++|++|+++|++||.+|++|..+
T Consensus 456 ~~vk~~~l~~A~e~a~~iL~ID~ii~~~ 483 (484)
T cd03342 456 YSVKRQILHSATVIASQLLLVDEIIRAG 483 (484)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHhhhcC
Confidence 9999999999999999999999998764
No 14
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.6e-46 Score=365.13 Aligned_cols=235 Identities=29% Similarity=0.413 Sum_probs=197.4
Q ss_pred CcEEEEcCCCcccchhhhcccchhhhhhhhhhhHH-HHHHHHhCCeEecccCCCCCCCCCcee--cceEEEccCcEEEEc
Q 024036 1 MKLCFVKPPVFEESWKAVYGENCELVYEENCKAIM-RDIAILTGGRVVTAASNSLYIPLMLGS--CKKVKVTNNEMIIHG 77 (273)
Q Consensus 1 ~~~~av~~p~~g~~~~~~~~~~~~~~~~~~~k~~l-edia~~tG~~iv~~~~~~~~~~~~LG~--a~~v~~~~~~~~~i~ 77 (273)
+++|+||.||||.-.++..-++--++.|++.++++ ++|+.+|||++++.. ++.++.++|. |+.++
T Consensus 271 ~~~vvv~~~gi~D~~~~~L~d~~Ilt~~~v~~~dl~~~l~~~~ga~~v~~~--~d~t~~~~G~~~~~~ve---------- 338 (524)
T COG0459 271 ANVVVVKAPGIDDLAKAYLEDIAILTGRRVKKEDLGERLAKLGGAKIVSVL--KDLTTIVLGEGAAGLVE---------- 338 (524)
T ss_pred CCEEEEECCCCcHHHHHHHHhhcceecceecchhhHHHHHHccCceEEeec--ccCceeecCccccceEE----------
Confidence 46899999999955555555555555555555555 455555555555555 5555555555 44443
Q ss_pred CCCChhhHHHHHHHHHHHHhhc-cCHHHHHHHHHHHHhhcCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cc
Q 024036 78 GSGNQVYIEDRCEQLSDAIEMS-TSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEG-II 155 (273)
Q Consensus 78 g~~~~~~i~~ri~~l~~~i~~~-~s~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~l~DAl~a~r~al~~g-vV 155 (273)
+. .++|+++++++|.++ .+++|||+|||+|+.+++|+||++|||||++|+++++| +|
T Consensus 339 --------------------~~~~~~~~~~~~~~~~~~-~~~~~tI~vrgate~~ldE~er~i~DAL~~~~~ave~g~iV 397 (524)
T COG0459 339 --------------------ETKTGDYDMEKLQERKAK-AGGVATILVRGATEVELDEKERRIEDALNVVRAAVEEGKIV 397 (524)
T ss_pred --------------------Eeeccchhhhhhhhhhhc-CCCeEEEEECCccHhHHHHHHHHHHHHHHHHHHHHhcCCeE
Confidence 22 467888899999999 99999999999999999999999999999999999999 99
Q ss_pred ccCcHHHHHHHHHHhcc-CCCCh-hHHHHHHHHHHHHhHHHHHHHHhcCCCHH-HHHHHHcCCC-CCeeeeCCCCcc-cc
Q 024036 156 PGGGVALLHASEELEKL-PAMNI-GEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQEN-PDLEYDPPRDEY-VD 230 (273)
Q Consensus 156 pGGGaael~~s~~L~~~-~~~~~-~~q~gi~~~a~AL~~pp~~La~NaG~d~~-vv~kl~~~~~-~~~G~d~~~g~~-~D 230 (273)
||||++|++++..|+++ ....+ ++|+|+++|++||+.||++||+|||+||+ ++.+|++.++ +++|||+.++++ .|
T Consensus 398 ~GGGa~e~~~a~~L~~~~~~~~g~~e~~~i~~~a~Ale~ip~~La~NaG~d~~~v~~~L~~~~~~~~~G~d~~~~~~~~d 477 (524)
T COG0459 398 PGGGAAEIEAALRLREYAMTVEGGDEQLGIEAFARALEAPPRQLAENAGLDPIEVLSKLRSAHATTNYGIDAFTGEYEDD 477 (524)
T ss_pred eCCCHHHHHHHHHHHhhhccCCchHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhcccCCccceeccCCccccc
Confidence 99999999999999998 33344 99999999999999999999999999999 9999999765 459999999999 78
Q ss_pred hhhcCcccCchHHHHHHHHHHHHHHHHHHhhHHHhhccC
Q 024036 231 AVKSAIVDPPLKLIRNELDDAVSYFVSRWCSTEKLQRQK 269 (273)
Q Consensus 231 m~~~GI~DP~~~Vk~~al~~A~~~A~~lL~~~e~i~~~~ 269 (273)
|++.||||| ++||+++|++|+++|+++|++|++|...+
T Consensus 478 m~~~GI~dP-~~v~~~al~~A~e~a~llL~~d~iI~~~~ 515 (524)
T COG0459 478 MIEAGIIDP-LKVKRSALKNAAEAAGLLLTIDDIIAAKP 515 (524)
T ss_pred hHhccCcCh-HHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 999999999 99999999999999999999999987643
No 15
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.9e-45 Score=361.90 Aligned_cols=222 Identities=16% Similarity=0.210 Sum_probs=199.4
Q ss_pred CCcccchhhhcccchhhhhhhhhhhHHHHHHHHhCCeEecccCCCCCCCCCceecceE---EEccCcEEEEcCCCChhhH
Q 024036 9 PVFEESWKAVYGENCELVYEENCKAIMRDIAILTGGRVVTAASNSLYIPLMLGSCKKV---KVTNNEMIIHGGSGNQVYI 85 (273)
Q Consensus 9 p~~g~~~~~~~~~~~~~~~~~~~k~~ledia~~tG~~iv~~~~~~~~~~~~LG~a~~v---~~~~~~~~~i~g~~~~~~i 85 (273)
.++.+.-...+-++.-+++|+.++++|+|||++|||+++++. +++++++||+|++| .+++++++++.+++++
T Consensus 296 k~I~~~a~~~L~~~~I~~i~rv~~~~le~ia~~tGa~~i~~l--~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~--- 370 (531)
T TIGR02347 296 KGIDPPSLDLLAKEGIMALRRAKRRNMERLTLACGGEALNSV--EDLTPECLGWAGLVYETSIGEEKYTFIEEVKNP--- 370 (531)
T ss_pred CCccHHHHHHHHHCCceEEccCCHHHHHHHHHHhCCEEeccc--ccCCccccccceEEEEEEECCeEEEEEEcCCCC---
Confidence 444433333444555678899999999999999999999998 89999999999999 6788899999988653
Q ss_pred HHHHHHHHHHHhhccCHHHHHHHHHHHHhhcCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-ccccCcHHHHH
Q 024036 86 EDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEG-IIPGGGVALLH 164 (273)
Q Consensus 86 ~~ri~~l~~~i~~~~s~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~l~DAl~a~r~al~~g-vVpGGGaael~ 164 (273)
++|||+|||+|+.+++|++|+++||+|++|+++++| +|||||++|++
T Consensus 371 --------------------------------~~~TI~lrG~t~~~l~E~er~l~DAl~v~~~~~~~~~vvpGGGa~E~~ 418 (531)
T TIGR02347 371 --------------------------------KSCTILIKGPNDHTIKQIKDAVRDGLRAVKNAIEDKCVVPGAGAFEIA 418 (531)
T ss_pred --------------------------------CeEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhCCcEEeCCCHHHHH
Confidence 579999999999999999999999999999999999 99999999999
Q ss_pred HHHHHhccCCC-ChhHHHHHHHHHHHHhHHHHHHHHhcCCCHH-HHHHHHcC---CCCCeeeeCCCCcccchhhcCcccC
Q 024036 165 ASEELEKLPAM-NIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQ---ENPDLEYDPPRDEYVDAVKSAIVDP 239 (273)
Q Consensus 165 ~s~~L~~~~~~-~~~~q~gi~~~a~AL~~pp~~La~NaG~d~~-vv~kl~~~---~~~~~G~d~~~g~~~Dm~~~GI~DP 239 (273)
+|.+|++++.. ++++|+++++|++||+.||++||+|||+|+. ++.+|++. ++.++|||+.+|++.||++.|||||
T Consensus 419 ls~~l~~~~~~~~~~~~~~i~~fa~ALe~ip~~La~NaG~d~~~vl~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gV~Dp 498 (531)
T TIGR02347 419 AYCHLKEEKKSVKGKAKLGVEAFANALLVIPKTLAENSGLDAQDTLVKLEDEHDEGGEVVGVDLETGEPIDPEIKGIWDN 498 (531)
T ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCceeeeccCCCccchhhccCEEc
Confidence 99999998654 7899999999999999999999999999999 99999764 3357999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHhhHHHhhcc
Q 024036 240 PLKLIRNELDDAVSYFVSRWCSTEKLQRQ 268 (273)
Q Consensus 240 ~~~Vk~~al~~A~~~A~~lL~~~e~i~~~ 268 (273)
+.||+++|++|+++|++||.+|++|...
T Consensus 499 -~~vk~~al~~A~e~a~~iLrID~ii~~~ 526 (531)
T TIGR02347 499 -YRVKKQLIQSATVIASQLLLVDEVMRAG 526 (531)
T ss_pred -HHHHHHHHHHHHHHHHHHHhHHHHHhCc
Confidence 9999999999999999999999988653
No 16
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=100.00 E-value=7.3e-45 Score=359.31 Aligned_cols=207 Identities=16% Similarity=0.234 Sum_probs=191.6
Q ss_pred hhhhhhhhhhhHHHHHHHHhCCeEecccCCCCCCCCCceecceEE---EccCcEEEEcCCCChhhHHHHHHHHHHHHhhc
Q 024036 23 CELVYEENCKAIMRDIAILTGGRVVTAASNSLYIPLMLGSCKKVK---VTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMS 99 (273)
Q Consensus 23 ~~~~~~~~~k~~ledia~~tG~~iv~~~~~~~~~~~~LG~a~~v~---~~~~~~~~i~g~~~~~~i~~ri~~l~~~i~~~ 99 (273)
--+++|+.++.+++|||++|||+++++. +++++++||+|++|+ +++++++++.++..
T Consensus 310 ~I~avr~v~~~~l~rIa~~tGa~iis~l--~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~~------------------ 369 (533)
T PTZ00212 310 GIMAIEHADFDGMERLAAALGAEIVSTF--DTPEKVKLGHCDLIEEIMIGEDKLIRFSGCAK------------------ 369 (533)
T ss_pred CCEEEecCCHHHHHHHHHHhCCEEeecC--CCCCHHHccCCceEEEEEECCeEEEEEEccCC------------------
Confidence 3467778888899999999999999998 889999999999998 67888999988643
Q ss_pred cCHHHHHHHHHHHHhhcCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-ccccCcHHHHHHHHHHhccCCC-Ch
Q 024036 100 TSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEG-IIPGGGVALLHASEELEKLPAM-NI 177 (273)
Q Consensus 100 ~s~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~l~DAl~a~r~al~~g-vVpGGGaael~~s~~L~~~~~~-~~ 177 (273)
+++|||+|||+|+.+++|+||+++||||++|+++++| +|||||++|+++|.+|+++... ++
T Consensus 370 -----------------~~~~TI~lrG~t~~~l~E~er~i~DAl~vv~~~i~~~~vVpGGGa~e~~ls~~L~~~~~~~~~ 432 (533)
T PTZ00212 370 -----------------GEACTIVLRGASTHILDEAERSLHDALCVLSQTVKDTRVVLGGGCSEMLMANAVEELAKKVEG 432 (533)
T ss_pred -----------------CCEEEEEEECCChhHHHHHHHHHHHHHHHHHHHhhCCCEeeCCCHHHHHHHHHHHHHHhhCCC
Confidence 4789999999999999999999999999999999997 9999999999999999998654 78
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHhcCCCHH-HHHHHHc---CCCCCeeeeCCCCcccchhhcCcccCchHHHHHHHHHHHH
Q 024036 178 GEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLG---QENPDLEYDPPRDEYVDAVKSAIVDPPLKLIRNELDDAVS 253 (273)
Q Consensus 178 ~~q~gi~~~a~AL~~pp~~La~NaG~d~~-vv~kl~~---~~~~~~G~d~~~g~~~Dm~~~GI~DP~~~Vk~~al~~A~~ 253 (273)
++|+++++|++||+.||++||+|||+|+. ++.+|++ +++.++|||+.+|++.||++.||||| +.||+++|+.|++
T Consensus 433 ~~~~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~~~~~G~d~~~g~i~d~~~~gI~dp-~~vk~~al~~A~e 511 (533)
T PTZ00212 433 KKSLAIEAFAKALRQIPTIIADNGGYDSAELVSKLRAEHYKGNKTAGIDMEKGTVGDMKELGITES-YKVKLSQLCSATE 511 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCccceeccCCcccchhhccceec-HHHHHHHHHHHHH
Confidence 99999999999999999999999999999 9999985 34567999999999999999999999 9999999999999
Q ss_pred HHHHHHhhHHHhhc
Q 024036 254 YFVSRWCSTEKLQR 267 (273)
Q Consensus 254 ~A~~lL~~~e~i~~ 267 (273)
+|++||.+|++|..
T Consensus 512 ~a~~iL~id~ii~~ 525 (533)
T PTZ00212 512 AAEMILRVDDIIRC 525 (533)
T ss_pred HHHHHHhhhHhhhc
Confidence 99999999999876
No 17
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2e-44 Score=355.00 Aligned_cols=206 Identities=17% Similarity=0.249 Sum_probs=186.6
Q ss_pred hhhhhhhhhHHHHHHHHhCCeEecccCCCCCCCCCceecceEEE---ccCcEEEEcCCCChhhHHHHHHHHHHHHhhccC
Q 024036 25 LVYEENCKAIMRDIAILTGGRVVTAASNSLYIPLMLGSCKKVKV---TNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTS 101 (273)
Q Consensus 25 ~~~~~~~k~~ledia~~tG~~iv~~~~~~~~~~~~LG~a~~v~~---~~~~~~~i~g~~~~~~i~~ri~~l~~~i~~~~s 101 (273)
+++++.++.+|+|||++|||+++++. +++++++||+|+.|+. ++++++++.+|.+
T Consensus 300 ~av~~v~~~~L~rIa~~tGa~ii~~l--~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~~-------------------- 357 (517)
T cd03336 300 MAIEHADFDGVERLALVTGGEIASTF--DHPELVKLGTCKLIEEIMIGEDKLIRFSGVAA-------------------- 357 (517)
T ss_pred EEEecCCHHHHHHHHHHhCCEEeccc--CCCCcccccccceEEEEEECCeEEEEEEccCC--------------------
Confidence 34444445579999999999999998 8999999999999874 4567888887653
Q ss_pred HHHHHHHHHHHHhhcCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-ccccCcHHHHHHHHHHhccCCC-ChhH
Q 024036 102 DYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEG-IIPGGGVALLHASEELEKLPAM-NIGE 179 (273)
Q Consensus 102 ~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~l~DAl~a~r~al~~g-vVpGGGaael~~s~~L~~~~~~-~~~~ 179 (273)
+++|||+|||+|+.+++|.+|+++|||+++|+++++| +|||||++||++|.+|+++... ++++
T Consensus 358 ---------------~~~~TI~lrG~t~~~l~E~er~i~Dal~~~~~~i~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~ 422 (517)
T cd03336 358 ---------------GEACTIVLRGASQQILDEAERSLHDALCVLAQTVKDTRVVLGGGCSEMLMAKAVEELAKKTPGKK 422 (517)
T ss_pred ---------------CceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCCCHHHHHHHHHHHHHhhhCCCHH
Confidence 4689999999999999999999999999999999998 9999999999999999988655 7899
Q ss_pred HHHHHHHHHHHhHHHHHHHHhcCCCHH-HHHHHHcC---CCCCeeeeCCCCcccchhhcCcccCchHHHHHHHHHHHHHH
Q 024036 180 KIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQ---ENPDLEYDPPRDEYVDAVKSAIVDPPLKLIRNELDDAVSYF 255 (273)
Q Consensus 180 q~gi~~~a~AL~~pp~~La~NaG~d~~-vv~kl~~~---~~~~~G~d~~~g~~~Dm~~~GI~DP~~~Vk~~al~~A~~~A 255 (273)
|+++++|++||+.||++||+|||+|+. ++++|++. ++.++|||+.+|++.||++.||||| +.||+++|+.|+++|
T Consensus 423 ~~~i~~~a~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gI~dp-~~vk~~~l~~A~e~a 501 (517)
T cd03336 423 SLAIEAFAKALRQLPTIIADNAGYDSAELVAQLRAAHYNGNTTAGLDMRKGTVGDMKELGITES-FKVKRQVLLSASEAA 501 (517)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCceeeecCCCCccchhhcCceec-HHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 99999863 4567999999999999999999999 999999999999999
Q ss_pred HHHHhhHHHhhcc
Q 024036 256 VSRWCSTEKLQRQ 268 (273)
Q Consensus 256 ~~lL~~~e~i~~~ 268 (273)
++||.+|++|...
T Consensus 502 ~~iL~id~ii~~~ 514 (517)
T cd03336 502 EMILRVDDIIKCA 514 (517)
T ss_pred HHHHhHhHHhhcC
Confidence 9999999988763
No 18
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.9e-44 Score=355.36 Aligned_cols=212 Identities=19% Similarity=0.244 Sum_probs=190.1
Q ss_pred ccchhhhhhhhhhhHHHHHHHHhCCeEecccCCCCCCCCCceecceEEE---ccCcEEEEcCCCChhhHHHHHHHHHHHH
Q 024036 20 GENCELVYEENCKAIMRDIAILTGGRVVTAASNSLYIPLMLGSCKKVKV---TNNEMIIHGGSGNQVYIEDRCEQLSDAI 96 (273)
Q Consensus 20 ~~~~~~~~~~~~k~~ledia~~tG~~iv~~~~~~~~~~~~LG~a~~v~~---~~~~~~~i~g~~~~~~i~~ri~~l~~~i 96 (273)
.++.-.++++.++.+|+|||++|||+++++. +++++++||+|++|+. ++++++++.+|++
T Consensus 296 ~~~~I~~v~~~~~~~l~~ia~~tGa~ii~~~--~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~--------------- 358 (519)
T TIGR02341 296 ADAGVMAIEHADFEGIERLALVTGGEIVSTF--DHPELVKLGSCDLIEEIMIGEDKLLKFSGVKL--------------- 358 (519)
T ss_pred HHCCcEEEecCCHHHHHHHHHHhCCEEeccc--ccCCccccccCceEEEEEECCEEEEEEEcCCC---------------
Confidence 3444456666667799999999999999998 8899999999998864 4567888887754
Q ss_pred hhccCHHHHHHHHHHHHhhcCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHc-CccccCcHHHHHHHHHHhccCCC
Q 024036 97 EMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEE-GIIPGGGVALLHASEELEKLPAM 175 (273)
Q Consensus 97 ~~~~s~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~l~DAl~a~r~al~~-gvVpGGGaael~~s~~L~~~~~~ 175 (273)
+++|||+|||+|+.+++|++|+++|||+++|+++++ ++|||||++||++|..|+++...
T Consensus 359 --------------------~~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~ 418 (519)
T TIGR02341 359 --------------------GEACTIVLRGATQQILDESERSLHDALCVLSQTVKESRTVLGGGCSEMLMSKAVAVEAQK 418 (519)
T ss_pred --------------------CCEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCCCHHHHHHHHHHHHHhhc
Confidence 468999999999999999999999999999999998 59999999999999999988654
Q ss_pred -ChhHHHHHHHHHHHHhHHHHHHHHhcCCCHH-HHHHHHcC---CCCCeeeeCCCCcccchhhcCcccCchHHHHHHHHH
Q 024036 176 -NIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQ---ENPDLEYDPPRDEYVDAVKSAIVDPPLKLIRNELDD 250 (273)
Q Consensus 176 -~~~~q~gi~~~a~AL~~pp~~La~NaG~d~~-vv~kl~~~---~~~~~G~d~~~g~~~Dm~~~GI~DP~~~Vk~~al~~ 250 (273)
++++|+++++|++||+.||++||+|||+|+. ++.+|++. ++.++|||+.+|++.||++.||||| +.||+++|+.
T Consensus 419 ~~~~~~~~i~~~a~Ale~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~i~d~~~~gI~dp-~~vk~~~l~~ 497 (519)
T TIGR02341 419 VPGKEALAVEAFARALRQLPTIIADNAGFDSAELVAQLRAAHYNGNHTMGLDMEEGEIADMRKLGIIES-YKVKRAVVSS 497 (519)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCccceecCCCcccchhhccceEc-HHHHHHHHHH
Confidence 7899999999999999999999999999999 99999863 3457999999999999999999999 9999999999
Q ss_pred HHHHHHHHHhhHHHhhccC
Q 024036 251 AVSYFVSRWCSTEKLQRQK 269 (273)
Q Consensus 251 A~~~A~~lL~~~e~i~~~~ 269 (273)
|+++|++||.+|++|....
T Consensus 498 A~e~a~~iL~id~ii~~~~ 516 (519)
T TIGR02341 498 AAEAAEVILRVDNIIKAAP 516 (519)
T ss_pred HHHHHHHHHhHHHHHhcCC
Confidence 9999999999999886543
No 19
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.7e-44 Score=355.82 Aligned_cols=229 Identities=14% Similarity=0.232 Sum_probs=209.5
Q ss_pred cEEEEcCCCcccchhhhcccchhhhhhhhhhhHHHHHHHHhCCeEecccCCCCCCCCCceecceEEE---ccCcEEEEcC
Q 024036 2 KLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAILTGGRVVTAASNSLYIPLMLGSCKKVKV---TNNEMIIHGG 78 (273)
Q Consensus 2 ~~~av~~p~~g~~~~~~~~~~~~~~~~~~~k~~ledia~~tG~~iv~~~~~~~~~~~~LG~a~~v~~---~~~~~~~i~g 78 (273)
+||+++.| |++.-+...-++.-++++++.+.++++||++|||+++++. +++++++||+|+.++. .+++++++.|
T Consensus 284 ~vv~~~~~-i~d~~~~~L~~~~I~~~~~v~~~dl~ria~~tga~ii~~~--~~l~~~~LG~~~~ie~~~~~~~r~~~~~g 360 (522)
T TIGR02345 284 NVVLSKLP-IGDLATQYFADHNIFCAGRVSDEDLKRVVKACGGSIQSTT--SDLEADVLGTCALFEERQIGSERYNYFTG 360 (522)
T ss_pred cEEEeCCC-ccHHHHHHHHHCCcEEEecCCHHHHHHHHHHhCCeEEcch--hhCChhhccCCceEEEEEECCeEEEEEEc
Confidence 68999999 9977778888888899999999999999999999999998 8999999999999875 4556777777
Q ss_pred CCChhhHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhcCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHc-Ccccc
Q 024036 79 SGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEE-GIIPG 157 (273)
Q Consensus 79 ~~~~~~i~~ri~~l~~~i~~~~s~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~l~DAl~a~r~al~~-gvVpG 157 (273)
+++ .++|||+|||+|+.+++|++|+++|||+++|+++++ ++|||
T Consensus 361 ~~~-----------------------------------~~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vvpG 405 (522)
T TIGR02345 361 CPH-----------------------------------AKTCTIILRGGAEQFIEEAERSLHDAIMIVRRALKARKIVAG 405 (522)
T ss_pred CCC-----------------------------------CceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeC
Confidence 643 247999999999999999999999999999999998 69999
Q ss_pred CcHHHHHHHHHHhccCCC-ChhHHHHHHHHHHHHhHHHHHHHHhcCCCHH-HHHHHHcC---CCCCeeeeCCCCcccchh
Q 024036 158 GGVALLHASEELEKLPAM-NIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQ---ENPDLEYDPPRDEYVDAV 232 (273)
Q Consensus 158 GGaael~~s~~L~~~~~~-~~~~q~gi~~~a~AL~~pp~~La~NaG~d~~-vv~kl~~~---~~~~~G~d~~~g~~~Dm~ 232 (273)
||++||+++.+|+++... ++++++++++|++||+.||++||+|||+|+. ++.+|++. ++.++|||+.+|++.||+
T Consensus 406 GG~~e~~ls~~l~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~~~~~G~d~~~~~i~d~~ 485 (522)
T TIGR02345 406 GGAIEMELSKILREHSKKIDGKQQLIIEAFAKALEIIPRSLCENAGFDSIEILNKLRSRHAKGGKWYGVDINTEDIGDNF 485 (522)
T ss_pred CCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCccceeCCCCcccchh
Confidence 999999999999988554 7899999999999999999999999999999 99999863 445799999999999999
Q ss_pred hcCcccCchHHHHHHHHHHHHHHHHHHhhHHHhhccC
Q 024036 233 KSAIVDPPLKLIRNELDDAVSYFVSRWCSTEKLQRQK 269 (273)
Q Consensus 233 ~~GI~DP~~~Vk~~al~~A~~~A~~lL~~~e~i~~~~ 269 (273)
+.||||| +.||+++|++|+++|++||.+|++|..++
T Consensus 486 ~~gI~dp-~~vk~~~l~~A~e~a~~iL~id~ii~~~~ 521 (522)
T TIGR02345 486 ENFVWEP-LLVKKNALKAAFEAACTILSIDETIMNPK 521 (522)
T ss_pred hcCceEc-HHHHHHHHHHHHHHHHHHHhHHHHHhCCC
Confidence 9999999 99999999999999999999999997754
No 20
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.5e-44 Score=350.84 Aligned_cols=209 Identities=19% Similarity=0.254 Sum_probs=188.4
Q ss_pred chhhhhhhhhhhHHHHHHHHhCCeEecccCCCCCCCCCceecceEEEcc---CcEEEEcCCCChhhHHHHHHHHHHHHhh
Q 024036 22 NCELVYEENCKAIMRDIAILTGGRVVTAASNSLYIPLMLGSCKKVKVTN---NEMIIHGGSGNQVYIEDRCEQLSDAIEM 98 (273)
Q Consensus 22 ~~~~~~~~~~k~~ledia~~tG~~iv~~~~~~~~~~~~LG~a~~v~~~~---~~~~~i~g~~~~~~i~~ri~~l~~~i~~ 98 (273)
+--+|+++.++.+|+|||++|||+++++. +++++++||+|++|++.+ ++++++.++.+
T Consensus 252 ~~I~av~~~~~~~Le~Ia~~tGa~ii~~~--~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~----------------- 312 (472)
T cd03341 252 YGIMVIKINSKFELRRLCRTVGATPLPRL--GAPTPEEIGYCDSVYVEEIGDTKVVVFRQNKE----------------- 312 (472)
T ss_pred CCeEEEEeCCHHHHHHHHHHhCCEEeccc--ccCCHhHCCCceEEEEEEECCeeEEEEEccCC-----------------
Confidence 33445556667789999999999999998 888899999999998754 78889887643
Q ss_pred ccCHHHHHHHHHHHHhhcCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-ccccCcHHHHHHHHHHhccCCC-C
Q 024036 99 STSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEG-IIPGGGVALLHASEELEKLPAM-N 176 (273)
Q Consensus 99 ~~s~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~l~DAl~a~r~al~~g-vVpGGGaael~~s~~L~~~~~~-~ 176 (273)
.++++||+|||+|+.+++|+||+++|||+++|+++++| +|||||++||+++.+|+++... +
T Consensus 313 -----------------~~~~~TI~lrG~t~~~l~E~er~i~DAl~~~~~ai~~~~vVpGGG~~e~~ls~~l~~~~~~~~ 375 (472)
T cd03341 313 -----------------DSKIATIVLRGATQNILDDVERAIDDGVNVFKSLTKDGRFVPGAGATEIELAKKLKEYGEKTP 375 (472)
T ss_pred -----------------CCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCcCHHHHHHHHHHHHHhhccC
Confidence 14789999999999999999999999999999999999 9999999999999999988554 7
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHhcCCCHH-HHHHHHc---CCCCCeeeeCCCC--cccchhhcCcccCchHHHHHHHHH
Q 024036 177 IGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLG---QENPDLEYDPPRD--EYVDAVKSAIVDPPLKLIRNELDD 250 (273)
Q Consensus 177 ~~~q~gi~~~a~AL~~pp~~La~NaG~d~~-vv~kl~~---~~~~~~G~d~~~g--~~~Dm~~~GI~DP~~~Vk~~al~~ 250 (273)
+++++++++|++||+.||++|++|||+|+. ++.+|+. .++.++|||+.+| ++.||++.||||| +.||+++|++
T Consensus 376 ~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~Gid~~~g~~~~~d~~~~gI~dp-~~vk~~~l~~ 454 (472)
T cd03341 376 GLEQYAIKKFAEAFEVVPRTLAENAGLDATEVLSELYAAHQKGNKSAGVDIESGDEGTKDAKEAGIFDH-LATKKWAIKL 454 (472)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCeeeeeccCCCCCccChhhccceec-HHHHHHHHHH
Confidence 899999999999999999999999999999 9999975 3355799999999 9999999999999 9999999999
Q ss_pred HHHHHHHHHhhHHHhhc
Q 024036 251 AVSYFVSRWCSTEKLQR 267 (273)
Q Consensus 251 A~~~A~~lL~~~e~i~~ 267 (273)
|+++|++||.+|++|..
T Consensus 455 A~e~a~~iL~id~ii~~ 471 (472)
T cd03341 455 ATEAAVTVLRVDQIIMA 471 (472)
T ss_pred HHHHHHHHhhhcceeec
Confidence 99999999999998753
No 21
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.3e-44 Score=356.97 Aligned_cols=212 Identities=20% Similarity=0.243 Sum_probs=191.6
Q ss_pred chhhhhhhhhhhHHHHHHHHhCCeEecccCC----CCCCCCCceecceEE---EccCcEEEEcCCCChhhHHHHHHHHHH
Q 024036 22 NCELVYEENCKAIMRDIAILTGGRVVTAASN----SLYIPLMLGSCKKVK---VTNNEMIIHGGSGNQVYIEDRCEQLSD 94 (273)
Q Consensus 22 ~~~~~~~~~~k~~ledia~~tG~~iv~~~~~----~~~~~~~LG~a~~v~---~~~~~~~~i~g~~~~~~i~~ri~~l~~ 94 (273)
+--+++++.++++|+|||++|||+++++..+ +++++.+||+|++|+ +++++++++.++++
T Consensus 295 ~~I~~v~~v~~~~lerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~g~~~------------- 361 (527)
T cd03335 295 AGAMAVRRVKKEDLRRIAKATGATLVSTLANLEGEETFDPSYLGEAEEVVQERIGDDELILIKGTKK------------- 361 (527)
T ss_pred CCcEEEEeCCHHHHHHHHHHhCCEEecChhhcCcccccCHhhCccCceEEEEEECCeEEEEEEcCCC-------------
Confidence 3456788999999999999999999998721 234556899999998 78889999998765
Q ss_pred HHhhccCHHHHHHHHHHHHhhcCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-ccccCcHHHHHHHHHHhccC
Q 024036 95 AIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEG-IIPGGGVALLHASEELEKLP 173 (273)
Q Consensus 95 ~i~~~~s~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~l~DAl~a~r~al~~g-vVpGGGaael~~s~~L~~~~ 173 (273)
+++|||+|||+|+.+++|.+|+++||+|++++++++| +|||||++||++|.+|++++
T Consensus 362 ----------------------~~~~TIllrG~t~~~l~e~er~i~Dal~~~~~~~~~~~vvpGGGa~e~~ls~~L~~~~ 419 (527)
T cd03335 362 ----------------------RSSASIILRGANDFMLDEMERSLHDALCVVKRTLESNSVVPGGGAVETALSIYLENFA 419 (527)
T ss_pred ----------------------CCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEeeCCCHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999999 99999999999999999886
Q ss_pred CC-ChhHHHHHHHHHHHHhHHHHHHHHhcCCCHH-HHHHHHcC---C--------CCCeeeeCCCCcccchhhcCcccCc
Q 024036 174 AM-NIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQ---E--------NPDLEYDPPRDEYVDAVKSAIVDPP 240 (273)
Q Consensus 174 ~~-~~~~q~gi~~~a~AL~~pp~~La~NaG~d~~-vv~kl~~~---~--------~~~~G~d~~~g~~~Dm~~~GI~DP~ 240 (273)
.. ++++|+++++|++||+.||++||+|||+|+. ++.+|++. + ++++|||+.+|++.||++.|||||
T Consensus 420 ~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~~~~~l~~~h~~~~~~~~~~~~~~~Gid~~~g~~~d~~~~gV~dp- 498 (527)
T cd03335 420 TTLGSREQLAIAEFAEALLVIPKTLAVNAAKDATELVAKLRAYHAAAQVKPDKKHLKWYGLDLINGKVRDNLEAGVLEP- 498 (527)
T ss_pred hccCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCccccccCceEeEECCCCcccchhhccceec-
Confidence 54 7899999999999999999999999999999 99999763 2 346899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHHhhccC
Q 024036 241 LKLIRNELDDAVSYFVSRWCSTEKLQRQK 269 (273)
Q Consensus 241 ~~Vk~~al~~A~~~A~~lL~~~e~i~~~~ 269 (273)
+.||.++|+.|+++|++||.+|++|...+
T Consensus 499 ~~~k~~~i~~A~e~a~~iLrID~ii~~~~ 527 (527)
T cd03335 499 TVSKIKSLKFATEAAITILRIDDLIKLNP 527 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcceeecCC
Confidence 99999999999999999999999987643
No 22
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.7e-44 Score=355.55 Aligned_cols=209 Identities=18% Similarity=0.238 Sum_probs=189.6
Q ss_pred chhhhhhhhhhhHHHHHHHHhCCeEecccCCCCCCCCCceecceEE-E--ccCcEEEEcCCCChhhHHHHHHHHHHHHhh
Q 024036 22 NCELVYEENCKAIMRDIAILTGGRVVTAASNSLYIPLMLGSCKKVK-V--TNNEMIIHGGSGNQVYIEDRCEQLSDAIEM 98 (273)
Q Consensus 22 ~~~~~~~~~~k~~ledia~~tG~~iv~~~~~~~~~~~~LG~a~~v~-~--~~~~~~~i~g~~~~~~i~~ri~~l~~~i~~ 98 (273)
+--+|+++.++++|+|||++|||+++++. +++++.+||+|+.|+ + ++..++++.++.+
T Consensus 299 ~~I~av~~v~~~~LerIa~~tGa~ii~~~--~~l~~~~LG~~~~v~~~~~~~~~~~~i~~~~~----------------- 359 (517)
T TIGR02342 299 MKIMVVKDIEREEVEFICKTIGCKPIASI--DHFTADKLGSAELVEEVTTDGGKIIKITGIQN----------------- 359 (517)
T ss_pred CCceEEecCCHHHHHHHHHHHCCEEEcch--hhcCcccCcCCceEEEEEECCeEEEEEEccCC-----------------
Confidence 44578889999999999999999999998 889999999999998 3 3445666776643
Q ss_pred ccCHHHHHHHHHHHHhhcCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHc-CccccCcHHHHHHHHHHhccCCC-C
Q 024036 99 STSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEE-GIIPGGGVALLHASEELEKLPAM-N 176 (273)
Q Consensus 99 ~~s~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~l~DAl~a~r~al~~-gvVpGGGaael~~s~~L~~~~~~-~ 176 (273)
+++++||+|||+|+++++|++|+++||++++|+++++ ++|||||++||++|.+|+++... +
T Consensus 360 -----------------~~~~~tIllrG~t~~~l~E~er~i~DAl~~v~~~~~~~~~VpGGGa~e~~ls~~l~~~~~~~~ 422 (517)
T TIGR02342 360 -----------------AGKTVTVLLRGSNKLVIDEAERSLHDALCVIRSLVKKRGLIPGGGAPEIEIAIKLSKLARTMK 422 (517)
T ss_pred -----------------CCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEEECcCHHHHHHHHHHHHHHhcCC
Confidence 2478999999999999999999999999999999998 59999999999999999988654 7
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHhcCCCHH-HHHHHHcC---CCCCeeeeCCCCcccchhhcCcccCchHHHHHHHHHHH
Q 024036 177 IGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQ---ENPDLEYDPPRDEYVDAVKSAIVDPPLKLIRNELDDAV 252 (273)
Q Consensus 177 ~~~q~gi~~~a~AL~~pp~~La~NaG~d~~-vv~kl~~~---~~~~~G~d~~~g~~~Dm~~~GI~DP~~~Vk~~al~~A~ 252 (273)
+++|+++++|++||+.||++||+|||+|+. ++.+|++. ++.++|||+.+|+++||++.||||| +.||+++|++|+
T Consensus 423 ~~~~~~i~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~i~d~~~~gI~dp-~~vk~~ai~~A~ 501 (517)
T TIGR02342 423 GVESYCVRAFADALEVIPYTLAENAGLNPIDVVTELRNRHANGEKYAGISVRKGGITDMLEEEVLQP-LLVTTSAVTLAS 501 (517)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCccceecCCCCccchhhccceEc-HHHHHHHHHHHH
Confidence 899999999999999999999999999999 99999863 4567999999999999999999999 999999999999
Q ss_pred HHHHHHHhhHHHhhc
Q 024036 253 SYFVSRWCSTEKLQR 267 (273)
Q Consensus 253 ~~A~~lL~~~e~i~~ 267 (273)
++|++||.+|++|..
T Consensus 502 e~a~~iL~iD~ii~~ 516 (517)
T TIGR02342 502 ETVRMILKIDDIVFT 516 (517)
T ss_pred HHHHHHhcccceeec
Confidence 999999999998753
No 23
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=4.1e-44 Score=353.07 Aligned_cols=229 Identities=16% Similarity=0.235 Sum_probs=208.2
Q ss_pred cEEEEcCCCcccchhhhcccchhhhhhhhhhhHHHHHHHHhCCeEecccCCCCCCCCCceecceEE---EccCcEEEEcC
Q 024036 2 KLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAILTGGRVVTAASNSLYIPLMLGSCKKVK---VTNNEMIIHGG 78 (273)
Q Consensus 2 ~~~av~~p~~g~~~~~~~~~~~~~~~~~~~k~~ledia~~tG~~iv~~~~~~~~~~~~LG~a~~v~---~~~~~~~~i~g 78 (273)
+|++++.| +++.-...+-++.-++++++++++|++||++|||+++++. +++++++||+|++|+ +++++++++.+
T Consensus 283 ~vvl~~~~-i~d~a~~~l~~~~I~~~~~v~~~~l~rIa~~tGa~ii~~l--~~l~~~~LG~~~~v~~~~ig~~~~~~~~~ 359 (522)
T cd03340 283 NVVLSKLP-IGDLATQYFADRDIFCAGRVPEEDLKRVAQATGGSIQTTV--SNITDDVLGTCGLFEERQVGGERYNIFTG 359 (522)
T ss_pred CEEEeCCC-CcHHHHHHHHHCCcEEEEeCCHHHHHHHHHHHCCEEeecc--ccCCccccccceEEEEEEECCEEEEEEEC
Confidence 46777777 7766677777777889999999999999999999999998 899999999999998 56778899988
Q ss_pred CCChhhHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhcCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cccc
Q 024036 79 SGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEG-IIPG 157 (273)
Q Consensus 79 ~~~~~~i~~ri~~l~~~i~~~~s~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~l~DAl~a~r~al~~g-vVpG 157 (273)
+.. .+.+||++||+|+..++|.+|+++||++++|+++++| +|||
T Consensus 360 ~~~-----------------------------------~~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~i~~~~vvpG 404 (522)
T cd03340 360 CPK-----------------------------------AKTCTIILRGGAEQFIEEAERSLHDAIMIVRRAIKNDSVVAG 404 (522)
T ss_pred CCC-----------------------------------CceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEC
Confidence 754 2579999999999999999999999999999999997 9999
Q ss_pred CcHHHHHHHHHHhccCCC-ChhHHHHHHHHHHHHhHHHHHHHHhcCCCHH-HHHHHHcC---CC-CCeeeeCCCCcccch
Q 024036 158 GGVALLHASEELEKLPAM-NIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQ---EN-PDLEYDPPRDEYVDA 231 (273)
Q Consensus 158 GGaael~~s~~L~~~~~~-~~~~q~gi~~~a~AL~~pp~~La~NaG~d~~-vv~kl~~~---~~-~~~G~d~~~g~~~Dm 231 (273)
||++||+++.+|+++... ++++++++++|++||+.||++||+|||+|+. ++.+|++. ++ .++|||+.+|++.||
T Consensus 405 GG~~E~~ls~~l~~~~~~~~~~~~~~~~~fa~aL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~i~d~ 484 (522)
T cd03340 405 GGAIEMELSKYLRDYSRTIAGKQQLVINAFAKALEIIPRQLCDNAGFDATDILNKLRQKHAQGGGKWYGVDINNEGIADN 484 (522)
T ss_pred cCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCCeeeeeCCCCcccch
Confidence 999999999999988554 7899999999999999999999999999999 99999864 33 579999999999999
Q ss_pred hhcCcccCchHHHHHHHHHHHHHHHHHHhhHHHhhccC
Q 024036 232 VKSAIVDPPLKLIRNELDDAVSYFVSRWCSTEKLQRQK 269 (273)
Q Consensus 232 ~~~GI~DP~~~Vk~~al~~A~~~A~~lL~~~e~i~~~~ 269 (273)
++.||||| +.||+++++.|+++|++||.+|++|..++
T Consensus 485 ~~~gV~dp-~~vk~~~i~~A~e~a~~iL~id~ii~~~~ 521 (522)
T cd03340 485 FEAFVWEP-SLVKINALTAATEAACLILSVDETIKNPK 521 (522)
T ss_pred hhcCceEc-HHHHHHHHHHHHHHHHHHhhhhhheeCCC
Confidence 99999999 99999999999999999999999997653
No 24
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.6e-44 Score=353.91 Aligned_cols=208 Identities=16% Similarity=0.225 Sum_probs=190.4
Q ss_pred chhhhhhhhhhhHHHHHHHHhCCeEecccCCCCCCCCCceecceEEEc---cCcEEEEcCCCChhhHHHHHHHHHHHHhh
Q 024036 22 NCELVYEENCKAIMRDIAILTGGRVVTAASNSLYIPLMLGSCKKVKVT---NNEMIIHGGSGNQVYIEDRCEQLSDAIEM 98 (273)
Q Consensus 22 ~~~~~~~~~~k~~ledia~~tG~~iv~~~~~~~~~~~~LG~a~~v~~~---~~~~~~i~g~~~~~~i~~ri~~l~~~i~~ 98 (273)
+--+|++++++++|+|||++|||+++++. +++++++||+|++|++. ++.++++.++..
T Consensus 298 ~~I~av~~~~~~~LerIa~~tGa~ii~sl--~~l~~~~LG~~~~v~~~~~g~~~~~~i~~~~~----------------- 358 (515)
T cd03338 298 LKIMVVKDIEREEIEFICKTIGCKPVASI--DHFTEDKLGSADLVEEVSLGDGKIVKITGVKN----------------- 358 (515)
T ss_pred CCceEEecCCHHHHHHHHHHHCCEEeccc--ccCCHhhCCCCceEEEEEECCeEEEEEEecCC-----------------
Confidence 44577889999999999999999999998 88989999999999864 446777777642
Q ss_pred ccCHHHHHHHHHHHHhhcCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-ccccCcHHHHHHHHHHhccCCC-C
Q 024036 99 STSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEG-IIPGGGVALLHASEELEKLPAM-N 176 (273)
Q Consensus 99 ~~s~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~l~DAl~a~r~al~~g-vVpGGGaael~~s~~L~~~~~~-~ 176 (273)
++++|||+|||+|+.+++|++|+++||||++++++++| +|||||++||++|.+|+++... +
T Consensus 359 -----------------~~~~~TIllrG~t~~~l~e~~r~i~Dal~~~~~~~~~~~vvpGGG~~e~~ls~~l~~~~~~~~ 421 (515)
T cd03338 359 -----------------PGKTVTILVRGSNKLVLDEAERSLHDALCVIRCLVKKRALIPGGGAPEIEIALQLSEWARTLT 421 (515)
T ss_pred -----------------CCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEEECCCHHHHHHHHHHHHHhccCC
Confidence 24789999999999999999999999999999999999 9999999999999999988554 7
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHhcCCCHH-HHHHHHcC---CCCCeeeeCCCCcccchhhcCcccCchHHHHHHHHHHH
Q 024036 177 IGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQ---ENPDLEYDPPRDEYVDAVKSAIVDPPLKLIRNELDDAV 252 (273)
Q Consensus 177 ~~~q~gi~~~a~AL~~pp~~La~NaG~d~~-vv~kl~~~---~~~~~G~d~~~g~~~Dm~~~GI~DP~~~Vk~~al~~A~ 252 (273)
+++|+++++|++||+.||++||+|||+|+. ++.+|++. ++.++|||+.+|++.||++.||||| +.||++++++|+
T Consensus 422 ~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~G~d~~~g~~~d~~~~gI~dp-~~vk~~~l~~A~ 500 (515)
T cd03338 422 GVEQYCVRAFADALEVIPYTLAENAGLNPISIVTELRNRHAQGEKNAGINVRKGAITNILEENVVQP-LLVSTSAITLAT 500 (515)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCccceeccCCCccchhhcCceec-HHHHHHHHHHHH
Confidence 899999999999999999999999999999 99999863 4567999999999999999999999 999999999999
Q ss_pred HHHHHHHhhHHHhh
Q 024036 253 SYFVSRWCSTEKLQ 266 (273)
Q Consensus 253 ~~A~~lL~~~e~i~ 266 (273)
++|++||.+|++|.
T Consensus 501 ~~a~~iL~ID~ii~ 514 (515)
T cd03338 501 ETVRMILKIDDIVL 514 (515)
T ss_pred HHHHHHhccchhhc
Confidence 99999999999885
No 25
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=3.3e-44 Score=354.02 Aligned_cols=210 Identities=17% Similarity=0.194 Sum_probs=192.0
Q ss_pred chhhhhhhhhhhHHHHHHHHhCCeEecccCCCCCCCCCcee-cceEEE---ccCcEEEEcCCCChhhHHHHHHHHHHHHh
Q 024036 22 NCELVYEENCKAIMRDIAILTGGRVVTAASNSLYIPLMLGS-CKKVKV---TNNEMIIHGGSGNQVYIEDRCEQLSDAIE 97 (273)
Q Consensus 22 ~~~~~~~~~~k~~ledia~~tG~~iv~~~~~~~~~~~~LG~-a~~v~~---~~~~~~~i~g~~~~~~i~~ri~~l~~~i~ 97 (273)
+--.+++++++++|+|||++|||+++++. +++++++||+ |+.+++ ++++++++++++++
T Consensus 303 ~~I~av~~v~~~~LerIa~~tGa~ii~~l--~~l~~~~lG~~~~~v~~~~ig~~~~~~~~g~~~~--------------- 365 (525)
T TIGR02344 303 ANISAIRRVRKTDNNRIARACGATIVNRP--EELRESDVGTGCGLFEVKKIGDEYFTFFTECKDP--------------- 365 (525)
T ss_pred CCceEEecCCHHHHHHHHHHhCCeEecch--hhCCHhhcCCcCCEEEEEEECCeEEEEEEcCCCC---------------
Confidence 33456789999999999999999999998 8899999999 998876 56788999887653
Q ss_pred hccCHHHHHHHHHHHHhhcCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-ccccCcHHHHHHHHHHhccCCC-
Q 024036 98 MSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEG-IIPGGGVALLHASEELEKLPAM- 175 (273)
Q Consensus 98 ~~~s~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~l~DAl~a~r~al~~g-vVpGGGaael~~s~~L~~~~~~- 175 (273)
.+|||+|||+|+.+++|.||+++||+++++++++++ +|||||++||++|.+|++++..
T Consensus 366 --------------------~~~TIlLrG~t~~~l~E~er~l~DAl~~vk~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~ 425 (525)
T TIGR02344 366 --------------------KACTILLRGASKDVLNEIERNLQDAMAVARNVLLEPKLLPGGGATEMAVSVYLAKKASKL 425 (525)
T ss_pred --------------------CEEEEEEEcCCHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCHHHHHHHHHHHHHHhcC
Confidence 479999999999999999999999999999999885 9999999999999999988554
Q ss_pred ChhHHHHHHHHHHHHhHHHHHHHHhcCCCHH-HHHHHHcC---C-CCCeeeeCCCCcccchhhcCcccCchHHHHHHHHH
Q 024036 176 NIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQ---E-NPDLEYDPPRDEYVDAVKSAIVDPPLKLIRNELDD 250 (273)
Q Consensus 176 ~~~~q~gi~~~a~AL~~pp~~La~NaG~d~~-vv~kl~~~---~-~~~~G~d~~~g~~~Dm~~~GI~DP~~~Vk~~al~~ 250 (273)
++++|+++++|++||+.||++||+|||+|+. ++.+|++. + +.++|+|+.+|++.||++.||||| +.||+++|++
T Consensus 426 ~~~~~~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~~~d~~~~gV~dp-~~vk~~~l~~ 504 (525)
T TIGR02344 426 EGVQQWPYRAVADALEIIPRTLAQNCGVNVIRTLTELRAKHAQEGNCTWGIDGETGKIVDMKEKGIWEP-LAVKLQTYKT 504 (525)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCCeEeEECCCCccccchhccceec-HHHHHHHHHH
Confidence 7899999999999999999999999999999 99999863 2 457999999999999999999999 9999999999
Q ss_pred HHHHHHHHHhhHHHhhccC
Q 024036 251 AVSYFVSRWCSTEKLQRQK 269 (273)
Q Consensus 251 A~~~A~~lL~~~e~i~~~~ 269 (273)
|+++|++||.+|++|...+
T Consensus 505 A~e~a~~iL~id~ii~~~~ 523 (525)
T TIGR02344 505 AIESACMLLRIDDIVSGVK 523 (525)
T ss_pred HHHHHHHHHhhhHHhhcCC
Confidence 9999999999999987754
No 26
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=4.4e-44 Score=353.58 Aligned_cols=208 Identities=18% Similarity=0.222 Sum_probs=185.2
Q ss_pred hhhhhhhhhhHHHHHHHHhCCeEecccCCCCCCCCCceecceEEE---ccCcEEEEcCCCChhhHHHHHHHHHHHHhhcc
Q 024036 24 ELVYEENCKAIMRDIAILTGGRVVTAASNSLYIPLMLGSCKKVKV---TNNEMIIHGGSGNQVYIEDRCEQLSDAIEMST 100 (273)
Q Consensus 24 ~~~~~~~~k~~ledia~~tG~~iv~~~~~~~~~~~~LG~a~~v~~---~~~~~~~i~g~~~~~~i~~ri~~l~~~i~~~~ 100 (273)
-+|+++.++.+|+|||.+|||+++++. +++++++||+|++|++ ++++++++.++..
T Consensus 302 I~av~~~~~~~l~~Ia~~tGa~ii~~l--~~~~~~~LG~a~~v~~~~ig~~~~~~i~~~~~------------------- 360 (531)
T TIGR02346 302 IMVLKIPSKFELRRLCKTVGATPLARL--GAPQPEEIGYVDSVYVSEIGGQKVTVFKQENG------------------- 360 (531)
T ss_pred cEEEecCCHHHHHHHHHHHCCEEeccc--ccCCHhHccccceEEEEEECCEEEEEEEccCC-------------------
Confidence 334444445589999999999999998 8899999999999976 3456777776431
Q ss_pred CHHHHHHHHHHHHhhcCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-ccccCcHHHHHHHHHHhccCCC-Chh
Q 024036 101 SDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEG-IIPGGGVALLHASEELEKLPAM-NIG 178 (273)
Q Consensus 101 s~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~l~DAl~a~r~al~~g-vVpGGGaael~~s~~L~~~~~~-~~~ 178 (273)
.++++||+|||+|+.+++|++|+++||||++|+++++| +|||||++||++|.+|+++... +++
T Consensus 361 ---------------~~~~~tI~lrG~t~~~l~E~er~i~DAl~~~k~ai~~~~vVpGGG~~e~~ls~~L~~~~~~~~~~ 425 (531)
T TIGR02346 361 ---------------DSKISTIILRGSTKNLLDDIERAIDDGVNVIKALVKDNRFLPGAGATEIELALRLKKYANKLPGL 425 (531)
T ss_pred ---------------CCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEECcCHHHHHHHHHHHHHhccCCCH
Confidence 25789999999999999999999999999999999999 9999999999999999988554 789
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhcCCCHH-HHHHHHcC---CCCCeeeeCCCCc--ccchhhcCcccCchHHHHHHHHHHH
Q 024036 179 EKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQ---ENPDLEYDPPRDE--YVDAVKSAIVDPPLKLIRNELDDAV 252 (273)
Q Consensus 179 ~q~gi~~~a~AL~~pp~~La~NaG~d~~-vv~kl~~~---~~~~~G~d~~~g~--~~Dm~~~GI~DP~~~Vk~~al~~A~ 252 (273)
+++++++|++||+.||++||+|||+|+. ++.+|+.. ++.++|||+.+|+ +.||++.||||| +.||+++|++|+
T Consensus 426 ~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~Gid~~~~~~~i~d~~~~gI~dp-~~vk~~~l~~A~ 504 (531)
T TIGR02346 426 DQYAIKKFAEAFEIIPRTLAENAGLNPNEVIPKLYAAHKKGNTSSGIDIEAESDGVKDASEAGIYDN-LATKKWAIKLAT 504 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCccceeeeCCCccccChhhcCceEc-HHHHHHHHHHHH
Confidence 9999999999999999999999999999 99999764 4457899999999 599999999999 999999999999
Q ss_pred HHHHHHHhhHHHhhcc
Q 024036 253 SYFVSRWCSTEKLQRQ 268 (273)
Q Consensus 253 ~~A~~lL~~~e~i~~~ 268 (273)
++|++||.+|++|...
T Consensus 505 e~a~~iL~id~ii~~~ 520 (531)
T TIGR02346 505 EAAVTVLRVDQIIMAK 520 (531)
T ss_pred HHHHHHhhhhHhhccC
Confidence 9999999999988754
No 27
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=3.2e-44 Score=353.33 Aligned_cols=209 Identities=20% Similarity=0.301 Sum_probs=192.2
Q ss_pred cchhhhhhhhhhhHHHHHHHHhCCeEecccCCCCCCCCCceecceEEEc---cCcEEEEcCCCChhhHHHHHHHHHHHHh
Q 024036 21 ENCELVYEENCKAIMRDIAILTGGRVVTAASNSLYIPLMLGSCKKVKVT---NNEMIIHGGSGNQVYIEDRCEQLSDAIE 97 (273)
Q Consensus 21 ~~~~~~~~~~~k~~ledia~~tG~~iv~~~~~~~~~~~~LG~a~~v~~~---~~~~~~i~g~~~~~~i~~ri~~l~~~i~ 97 (273)
++--++++++++++|+|||++|||+++++. +++++++||+|++|++. +++++++++++++
T Consensus 299 ~~gI~~v~~v~~~~l~~Ia~~tGa~ii~~~--~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~--------------- 361 (517)
T cd03343 299 KAGILAVRRVKKSDMEKLARATGAKIVTNI--DDLTPEDLGEAELVEERKVGDDKMVFVEGCKNP--------------- 361 (517)
T ss_pred HCCcEEEEeCCHHHHHHHHHHhCCEEecch--hhCChhhCCccceEEEEEECCeEEEEEEcCCCC---------------
Confidence 344468899999999999999999999998 89999999999999875 7788999887653
Q ss_pred hccCHHHHHHHHHHHHhhcCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-ccccCcHHHHHHHHHHhccCCC-
Q 024036 98 MSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEG-IIPGGGVALLHASEELEKLPAM- 175 (273)
Q Consensus 98 ~~~s~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~l~DAl~a~r~al~~g-vVpGGGaael~~s~~L~~~~~~- 175 (273)
..+||+|||+|+.+++|++|+++|||+++|+++++| +|||||++||++|..|+++...
T Consensus 362 --------------------~~~TI~lrG~t~~~l~e~~~~l~Dal~~~~~~~~~~~vvpGGG~~e~~ls~~L~~~~~~~ 421 (517)
T cd03343 362 --------------------KAVTILLRGGTEHVVDELERALEDALRVVADALEDGKVVAGGGAVEIELAKRLREYARSV 421 (517)
T ss_pred --------------------ceEEEEEECCcHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCHHHHHHHHHHHHHHhcC
Confidence 468999999999999999999999999999999999 9999999999999999987554
Q ss_pred ChhHHHHHHHHHHHHhHHHHHHHHhcCCCHH-HHHHHHc---CCCCCeeeeCCCCcccchhhcCcccCchHHHHHHHHHH
Q 024036 176 NIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLG---QENPDLEYDPPRDEYVDAVKSAIVDPPLKLIRNELDDA 251 (273)
Q Consensus 176 ~~~~q~gi~~~a~AL~~pp~~La~NaG~d~~-vv~kl~~---~~~~~~G~d~~~g~~~Dm~~~GI~DP~~~Vk~~al~~A 251 (273)
++++|+++++|++||+.||++||+|||+|+. ++.+|++ .++.++|||+.+|++.||++.||||| +.||+++|++|
T Consensus 422 ~~~~~~~~~~~~~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~G~d~~~g~~~d~~~~gI~dp-~~vk~~~l~~A 500 (517)
T cd03343 422 GGREQLAVEAFADALEEIPRTLAENAGLDPIDTLVELRAAHEKGNKNAGLDVYTGEVVDMLEKGVIEP-LRVKKQAIKSA 500 (517)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCceeeecCCCCccchhhcCceec-HHHHHHHHHHH
Confidence 8899999999999999999999999999999 9999984 24567999999999999999999999 99999999999
Q ss_pred HHHHHHHHhhHHHhhc
Q 024036 252 VSYFVSRWCSTEKLQR 267 (273)
Q Consensus 252 ~~~A~~lL~~~e~i~~ 267 (273)
+++|++||.+|++|..
T Consensus 501 ~e~a~~iL~id~ii~~ 516 (517)
T cd03343 501 TEAATMILRIDDVIAA 516 (517)
T ss_pred HHHHHHHHhhhHhhhC
Confidence 9999999999998853
No 28
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=4.7e-44 Score=352.99 Aligned_cols=208 Identities=19% Similarity=0.223 Sum_probs=189.4
Q ss_pred cchhhhhhhhhhhHHHHHHHHhCCeEecccCCCCCCCCCceecceEEE-----ccCcEEEEcCCCChhhHHHHHHHHHHH
Q 024036 21 ENCELVYEENCKAIMRDIAILTGGRVVTAASNSLYIPLMLGSCKKVKV-----TNNEMIIHGGSGNQVYIEDRCEQLSDA 95 (273)
Q Consensus 21 ~~~~~~~~~~~k~~ledia~~tG~~iv~~~~~~~~~~~~LG~a~~v~~-----~~~~~~~i~g~~~~~~i~~ri~~l~~~ 95 (273)
+|--.++++.++++|+|||++|||+++++. +++++++||+|++|+. +++.+++++++++
T Consensus 307 ~~~I~av~~v~~~~LerIa~~tGa~ii~~l--~~l~~~~LG~~~~v~~~~ig~~~~~~~~i~g~~~-------------- 370 (526)
T cd03339 307 QNGLPAVRWVGGVEIELIAIATGGRIVPRF--EDLSPEKLGKAGLVREISFGTTKDKMLVIEGCPN-------------- 370 (526)
T ss_pred HCCCEEEEeCCHHHHHHHHHHhCCEEecch--hhCChhhcccCceEEEEEecCCCcEEEEEECCCC--------------
Confidence 444557888889999999999999999998 8999999999999873 2467888888865
Q ss_pred HhhccCHHHHHHHHHHHHhhcCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-ccccCcHHHHHHHHHHhccCC
Q 024036 96 IEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEG-IIPGGGVALLHASEELEKLPA 174 (273)
Q Consensus 96 i~~~~s~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~l~DAl~a~r~al~~g-vVpGGGaael~~s~~L~~~~~ 174 (273)
.+++||+|||+|+.+++|.||+++|||+++|+++++| +|||||++||++|..|+++..
T Consensus 371 ---------------------~~~~TIllrG~t~~~l~E~er~l~DAl~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~ 429 (526)
T cd03339 371 ---------------------SKAVTIFIRGGNKMIIEEAKRSLHDALCVVRNLIRDNRIVYGGGAAEISCSLAVEKAAD 429 (526)
T ss_pred ---------------------CCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhhCCCEEeCCCHHHHHHHHHHHHHhc
Confidence 2679999999999999999999999999999999998 999999999999999998865
Q ss_pred C-ChhHHHHHHHHHHHHhHHHHHHHHhcCCCHH-HHHHHHcC----CCCCeeeeCCCCcccchhhcCcccCchHHHHHHH
Q 024036 175 M-NIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQ----ENPDLEYDPPRDEYVDAVKSAIVDPPLKLIRNEL 248 (273)
Q Consensus 175 ~-~~~~q~gi~~~a~AL~~pp~~La~NaG~d~~-vv~kl~~~----~~~~~G~d~~~g~~~Dm~~~GI~DP~~~Vk~~al 248 (273)
. ++++|+++++|++||+.||++||+|||+|+. ++++|+.. ++.++|||+.+|++.||++.||||| +.||+++|
T Consensus 430 ~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~~~d~~~~gV~dp-~~vk~~~l 508 (526)
T cd03339 430 KCSGIEQYAMRAFADALESIPLALAENSGLNPIETLSEVKARQVKEKNPHLGIDCLGRGTNDMKEQKVFET-LISKKQQI 508 (526)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCCeEeeecCCCccCchhhcCceec-HHHHHHHH
Confidence 4 7889999999999999999999999999999 99999732 2457999999999999999999999 99999999
Q ss_pred HHHHHHHHHHHhhHHHhh
Q 024036 249 DDAVSYFVSRWCSTEKLQ 266 (273)
Q Consensus 249 ~~A~~~A~~lL~~~e~i~ 266 (273)
+.|+++|++||.+|++|.
T Consensus 509 ~~A~e~a~~iL~iD~ii~ 526 (526)
T cd03339 509 LLATQVVKMILKIDDVIV 526 (526)
T ss_pred HHHHHHHHHHhhhceecC
Confidence 999999999999999873
No 29
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=4.7e-44 Score=353.74 Aligned_cols=209 Identities=19% Similarity=0.241 Sum_probs=189.1
Q ss_pred hhhhhhhhhhHHHHHHHHhCCeEecccCC----CCCCCCCceecceEE---EccCcEEEEcCCCChhhHHHHHHHHHHHH
Q 024036 24 ELVYEENCKAIMRDIAILTGGRVVTAASN----SLYIPLMLGSCKKVK---VTNNEMIIHGGSGNQVYIEDRCEQLSDAI 96 (273)
Q Consensus 24 ~~~~~~~~k~~ledia~~tG~~iv~~~~~----~~~~~~~LG~a~~v~---~~~~~~~~i~g~~~~~~i~~ri~~l~~~i 96 (273)
-+++++.++++|+|||++|||+++++..+ +++++++||+|++|+ +++++++++++++++
T Consensus 301 I~~i~rv~~~~LerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~-------------- 366 (536)
T TIGR02340 301 AMGVRRCKKEDLKRIAKATGGTLVSTLADLEGEETFDASYLGFADEVVEERIADDECILIKGTKGR-------------- 366 (536)
T ss_pred cEEEecCCHHHHHHHHHHhCCEEecchhhcCccccccccccccCceEEEEEECCeEEEEEEcCCCC--------------
Confidence 35577888999999999999999998722 345667799999998 788899999887653
Q ss_pred hhccCHHHHHHHHHHHHhhcCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-ccccCcHHHHHHHHHHhccCCC
Q 024036 97 EMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEG-IIPGGGVALLHASEELEKLPAM 175 (273)
Q Consensus 97 ~~~~s~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~l~DAl~a~r~al~~g-vVpGGGaael~~s~~L~~~~~~ 175 (273)
++|||+|||+|+.+++|++|+++||||++|+++++| +|||||++||++|.+|+++...
T Consensus 367 ---------------------~~~TIlirG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vVpGGGa~e~~ls~~l~~~~~~ 425 (536)
T TIGR02340 367 ---------------------KSASIILRGANDFMLDEMERSLHDALCVVKRTLESNSVVPGGGAVETALSIYLENFATT 425 (536)
T ss_pred ---------------------CEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhcCCCEEECCCHHHHHHHHHHHHHhhh
Confidence 479999999999999999999999999999999999 9999999999999999987554
Q ss_pred -ChhHHHHHHHHHHHHhHHHHHHHHhcCCCHH-HHHHHHcC---C--------CCCeeeeCCCCcccchhhcCcccCchH
Q 024036 176 -NIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQ---E--------NPDLEYDPPRDEYVDAVKSAIVDPPLK 242 (273)
Q Consensus 176 -~~~~q~gi~~~a~AL~~pp~~La~NaG~d~~-vv~kl~~~---~--------~~~~G~d~~~g~~~Dm~~~GI~DP~~~ 242 (273)
++++++++++|++||+.||++||+|||+|+. ++.+|++. + +.++|||+.+|++.||++.||||| +.
T Consensus 426 ~~~~~~~~~~~fa~AL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~~~~~~~~Gid~~~g~~~d~~~~gI~Dp-~~ 504 (536)
T TIGR02340 426 LGSREQLAIAEFAEALLIIPKVLAVNAALDSTELVAKLRAYHAAAQLKPEKKHLKWYGLDLSNGKIRDNKEAGVLEP-AV 504 (536)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCcccccccCceEeEEccCCccccchhccceec-HH
Confidence 7899999999999999999999999999999 99999762 1 346899999999999999999999 99
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHhhcc
Q 024036 243 LIRNELDDAVSYFVSRWCSTEKLQRQ 268 (273)
Q Consensus 243 Vk~~al~~A~~~A~~lL~~~e~i~~~ 268 (273)
||.++|+.|+++|++||.+|++|...
T Consensus 505 ~k~~~l~~A~e~a~~iL~ID~ii~~~ 530 (536)
T TIGR02340 505 SKVKSLKFATEAAITILRIDDLIKLN 530 (536)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcC
Confidence 99999999999999999999988753
No 30
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=100.00 E-value=1.4e-43 Score=349.11 Aligned_cols=208 Identities=17% Similarity=0.245 Sum_probs=191.3
Q ss_pred cchhhhhhhhhhhHHHHHHHHhCCeEecccCCCCCCCCCceecceEEEcc---CcEEEEcCCCChhhHHHHHHHHHHHHh
Q 024036 21 ENCELVYEENCKAIMRDIAILTGGRVVTAASNSLYIPLMLGSCKKVKVTN---NEMIIHGGSGNQVYIEDRCEQLSDAIE 97 (273)
Q Consensus 21 ~~~~~~~~~~~k~~ledia~~tG~~iv~~~~~~~~~~~~LG~a~~v~~~~---~~~~~i~g~~~~~~i~~ri~~l~~~i~ 97 (273)
++--++++++++++|+|||++|||+++++. +++++++||+|++|++.+ ++++++++++++
T Consensus 302 ~~gI~~v~~v~~~~L~rIa~~tGa~ii~~~--~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~--------------- 364 (519)
T TIGR02339 302 KAGILAVRRVKKSDIEKLARATGAKIVSSI--KEITESDLGYAGLVEERKVGDDKMTFVEGCKNP--------------- 364 (519)
T ss_pred HCCCEEEecCCHHHHHHHHHHhCCEEeCch--hhCChhhccCCceEEEEEECCeEEEEEEcCCCC---------------
Confidence 444566889999999999999999999998 888889999999998754 789999987643
Q ss_pred hccCHHHHHHHHHHHHhhcCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-ccccCcHHHHHHHHHHhccCCC-
Q 024036 98 MSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEG-IIPGGGVALLHASEELEKLPAM- 175 (273)
Q Consensus 98 ~~~s~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~l~DAl~a~r~al~~g-vVpGGGaael~~s~~L~~~~~~- 175 (273)
..+||+|||+|+.+++|.+|+++|||+++|+++++| +|||||++||++|.+|++++..
T Consensus 365 --------------------~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~ 424 (519)
T TIGR02339 365 --------------------KAVTILLRGGTEHVVDELERSIQDALHVVASALEDGKVVAGGGAVEIELALRLRSYARKI 424 (519)
T ss_pred --------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEeeCCCHHHHHHHHHHHHHhhcC
Confidence 468999999999999999999999999999999999 9999999999999999988554
Q ss_pred ChhHHHHHHHHHHHHhHHHHHHHHhcCCCHH-HHHHHHc---CCCCCeeeeCCCCcccchhhcCcccCchHHHHHHHHHH
Q 024036 176 NIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLG---QENPDLEYDPPRDEYVDAVKSAIVDPPLKLIRNELDDA 251 (273)
Q Consensus 176 ~~~~q~gi~~~a~AL~~pp~~La~NaG~d~~-vv~kl~~---~~~~~~G~d~~~g~~~Dm~~~GI~DP~~~Vk~~al~~A 251 (273)
++++++++++|++||+.||++||+|||+|+. ++.+|+. .++.++|||+.+|++.||++.||||| +.||+++|+.|
T Consensus 425 ~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gI~dp-~~vk~~~l~~A 503 (519)
T TIGR02339 425 GGREQLAIEAFADALEEIPRILAENAGLDPIDALVELRAKHEKGNKNAGINVFTGEIEDMLELGVIEP-LRVKEQAIKSA 503 (519)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCceeEEcCCCCccchhhccceEc-HHHHHHHHHHH
Confidence 7899999999999999999999999999999 9999984 24567999999999999999999999 99999999999
Q ss_pred HHHHHHHHhhHHHhh
Q 024036 252 VSYFVSRWCSTEKLQ 266 (273)
Q Consensus 252 ~~~A~~lL~~~e~i~ 266 (273)
+++|++||.+|++|.
T Consensus 504 ~e~a~~iL~id~ii~ 518 (519)
T TIGR02339 504 TEAATMILRIDDVIA 518 (519)
T ss_pred HHHHHHHHhHhHHhh
Confidence 999999999999874
No 31
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.5e-43 Score=348.32 Aligned_cols=211 Identities=17% Similarity=0.183 Sum_probs=190.1
Q ss_pred hcccchhhhhhhhhhhHHHHHHHHhCCeEecccCCCCCCCCCceecceEEE---c--cCcEEEEcCCCChhhHHHHHHHH
Q 024036 18 VYGENCELVYEENCKAIMRDIAILTGGRVVTAASNSLYIPLMLGSCKKVKV---T--NNEMIIHGGSGNQVYIEDRCEQL 92 (273)
Q Consensus 18 ~~~~~~~~~~~~~~k~~ledia~~tG~~iv~~~~~~~~~~~~LG~a~~v~~---~--~~~~~~i~g~~~~~~i~~ri~~l 92 (273)
.+-+|--.++|+.++++|+|||++|||+++++. +++++++||+|++|+. + .++++++++++++
T Consensus 308 ~L~~~~i~~v~~~~~~~l~~Ia~~tGa~~i~~l--~~~~~~~LG~a~~v~~~~ig~~~~~~~~i~~~~~~---------- 375 (532)
T TIGR02343 308 LLLQNDLPAVRWVGGHELELIAIATGGRIVPRF--EELSEDKLGKAGLVREISFGTTKDRMLVIEQCKNS---------- 375 (532)
T ss_pred HHHHCCcEEEEcCCHHHHHHHHHHhCCEEeccc--ccCCHhHCcccceEEEEEecCCcceEEEEECCCCC----------
Confidence 334445567889999999999999999999998 8999999999999873 2 2478888888653
Q ss_pred HHHHhhccCHHHHHHHHHHHHhhcCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHc-CccccCcHHHHHHHHHHhc
Q 024036 93 SDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEE-GIIPGGGVALLHASEELEK 171 (273)
Q Consensus 93 ~~~i~~~~s~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~l~DAl~a~r~al~~-gvVpGGGaael~~s~~L~~ 171 (273)
+++||+|||+|+.+++|+||+++||++++|+++++ ++|||||++||++|.+|++
T Consensus 376 -------------------------~~~TIllrG~t~~~l~E~er~l~DAl~~v~~~i~~~~vvpGGGa~e~~ls~~l~~ 430 (532)
T TIGR02343 376 -------------------------KAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLIKNSRIVYGGGAAEISCSLAVSQ 430 (532)
T ss_pred -------------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCcCHHHHHHHHHHHH
Confidence 47999999999999999999999999999999998 5999999999999999998
Q ss_pred cCCC-ChhHHHHHHHHHHHHhHHHHHHHHhcCCCHH-HHHHHHcC----CCCCeeeeCCCCcccchhhcCcccCchHHHH
Q 024036 172 LPAM-NIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQ----ENPDLEYDPPRDEYVDAVKSAIVDPPLKLIR 245 (273)
Q Consensus 172 ~~~~-~~~~q~gi~~~a~AL~~pp~~La~NaG~d~~-vv~kl~~~----~~~~~G~d~~~g~~~Dm~~~GI~DP~~~Vk~ 245 (273)
++.. ++++|+++++|++||+.||++||+|||+|+. ++++|++. +..++|||+.+|.++||++.||||| +.||.
T Consensus 431 ~~~~~~~~~~~~i~~fa~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~i~d~~~~gV~Dp-~~vk~ 509 (532)
T TIGR02343 431 EADKYSGVEQYAIRAFADALEEIPMALAENSGLDPIGTLSDLKSLQMKEKNPHLGVDCLGDGTNDMKEQGVFET-LIGKK 509 (532)
T ss_pred HhccCCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCCccCeeCCCCccccchhccCeec-HHHHH
Confidence 8654 7889999999999999999999999999999 99999752 2457999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHHhhHHHhh
Q 024036 246 NELDDAVSYFVSRWCSTEKLQ 266 (273)
Q Consensus 246 ~al~~A~~~A~~lL~~~e~i~ 266 (273)
++|+.|+++|++||.+|++|.
T Consensus 510 ~al~~A~e~a~~iL~id~ii~ 530 (532)
T TIGR02343 510 QQIQLATQLVRMILKIDDVIS 530 (532)
T ss_pred HHHHHHHHHHHHHHhHhhhcc
Confidence 999999999999999999884
No 32
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=4.3e-43 Score=342.81 Aligned_cols=209 Identities=16% Similarity=0.170 Sum_probs=188.4
Q ss_pred ccchhhhhhhhhhhHHHHHHHHhCCeEecccCCCCCCCCCceec-ceEEE---ccCcEEEEcCCCChhhHHHHHHHHHHH
Q 024036 20 GENCELVYEENCKAIMRDIAILTGGRVVTAASNSLYIPLMLGSC-KKVKV---TNNEMIIHGGSGNQVYIEDRCEQLSDA 95 (273)
Q Consensus 20 ~~~~~~~~~~~~k~~ledia~~tG~~iv~~~~~~~~~~~~LG~a-~~v~~---~~~~~~~i~g~~~~~~i~~ri~~l~~~ 95 (273)
-+|--.+++++++++|+|||++|||+++++. +++++++||+| +.++. +++.++++.+++++
T Consensus 260 ~~~~I~~v~~v~~~~L~rIa~~tGa~ii~~~--~~l~~~~LG~~~~~~~~~~~~~~~~~~i~~~~~~------------- 324 (480)
T cd03337 260 VKAGITALRRVRKTDNNRIARACGATIVNRP--EELTESDVGTGAGLFEVKKIGDEYFTFITECKDP------------- 324 (480)
T ss_pred HHCCcEEEEeCCHHHHHHHHHHHCCEEecch--hhCCHHHcCCcccEEEEEEeCCeEEEEEEcCCCC-------------
Confidence 3455677889999999999999999999998 89999999995 44442 45678888887652
Q ss_pred HhhccCHHHHHHHHHHHHhhcCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHc-CccccCcHHHHHHHHHHhccCC
Q 024036 96 IEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEE-GIIPGGGVALLHASEELEKLPA 174 (273)
Q Consensus 96 i~~~~s~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~l~DAl~a~r~al~~-gvVpGGGaael~~s~~L~~~~~ 174 (273)
+++||+|||+|+.+++|.||+++||++++++++++ ++|||||++||++|.+|+++..
T Consensus 325 ----------------------~~~TIllrG~t~~~l~e~er~l~DAl~v~~~~~~~~~~vpGGGa~E~~ls~~l~~~~~ 382 (480)
T cd03337 325 ----------------------KACTILLRGASKDVLNEVERNLQDAMAVARNIILNPKLVPGGGATEMAVSHALSEKAK 382 (480)
T ss_pred ----------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCCCHHHHHHHHHHHHHhh
Confidence 57999999999999999999999999999999999 5999999999999999998765
Q ss_pred C-ChhHHHHHHHHHHHHhHHHHHHHHhcCCCHH-HHHHHHcC---C-CCCeeeeCCCCcccchhhcCcccCchHHHHHHH
Q 024036 175 M-NIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQ---E-NPDLEYDPPRDEYVDAVKSAIVDPPLKLIRNEL 248 (273)
Q Consensus 175 ~-~~~~q~gi~~~a~AL~~pp~~La~NaG~d~~-vv~kl~~~---~-~~~~G~d~~~g~~~Dm~~~GI~DP~~~Vk~~al 248 (273)
. ++++|+++++|++||+.||++||+|||+|+. ++.+|++. + +.++|+|+.+|++.||++.||||| +.||+++|
T Consensus 383 ~~~~~~~~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~i~d~~~~gV~dp-~~vk~~~l 461 (480)
T cd03337 383 SIEGVEQWPYKAVASALEVIPRTLAQNCGANVIRTLTELRAKHAQGENSTWGIDGETGDIVDMKELGIWDP-LAVKAQTY 461 (480)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCCeECeeccCCCcccchhccCeEc-HHHHHHHH
Confidence 5 7899999999999999999999999999999 99999863 2 457999999999999999999999 99999999
Q ss_pred HHHHHHHHHHHhhHHHhh
Q 024036 249 DDAVSYFVSRWCSTEKLQ 266 (273)
Q Consensus 249 ~~A~~~A~~lL~~~e~i~ 266 (273)
++|+++|++||.+|++|.
T Consensus 462 ~~A~e~a~~iL~id~ii~ 479 (480)
T cd03337 462 KTAIEAACMLLRIDDIVS 479 (480)
T ss_pred HHHHHHHHHHhhhhheec
Confidence 999999999999999863
No 33
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=6.2e-42 Score=332.92 Aligned_cols=204 Identities=28% Similarity=0.371 Sum_probs=186.0
Q ss_pred hhhhhhhhhHHHHHHHHhCCeEecccCCCCCCCCCceecceEEEc---cCcEEEEcCCCChhhHHHHHHHHHHHHhhccC
Q 024036 25 LVYEENCKAIMRDIAILTGGRVVTAASNSLYIPLMLGSCKKVKVT---NNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTS 101 (273)
Q Consensus 25 ~~~~~~~k~~ledia~~tG~~iv~~~~~~~~~~~~LG~a~~v~~~---~~~~~~i~g~~~~~~i~~ri~~l~~~i~~~~s 101 (273)
.++++.++++|+|||++||++++++. +++++++||+|+.+++. +.+++++.++..
T Consensus 252 ~~v~~~~~~~L~~Ia~~tGa~ii~~~--~~~~~~~lG~~~~v~~~~~g~~~~~~~~~~~~-------------------- 309 (464)
T cd00309 252 MAVRRVRKEDLERIAKATGATIVSRL--EDLTPEDLGTAGLVEETKIGDEKYTFIEGCKG-------------------- 309 (464)
T ss_pred EEEEeCCHHHHHHHHHHhCCEEeccc--ccCCcccCccccEEEEEEEcCeeEEEEEecCC--------------------
Confidence 45667889999999999999999998 88999999999999864 446777776543
Q ss_pred HHHHHHHHHHHHhhcCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHc-CccccCcHHHHHHHHHHhccCCC-ChhH
Q 024036 102 DYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEE-GIIPGGGVALLHASEELEKLPAM-NIGE 179 (273)
Q Consensus 102 ~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~l~DAl~a~r~al~~-gvVpGGGaael~~s~~L~~~~~~-~~~~ 179 (273)
+++|||+|||+|+.+++|+||+++||++++|+++++ ++|||||++||+++..|+++... ++++
T Consensus 310 ---------------~~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGGa~E~~ls~~L~~~~~~~~~~~ 374 (464)
T cd00309 310 ---------------GKVATILLRGATEVELDEAERSLHDALCAVRAAVEDGGIVPGGGAAEIELSKALEELAKTLPGKE 374 (464)
T ss_pred ---------------CCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCcHHHHHHHHHHHHHhcccchHH
Confidence 468999999999999999999999999999999999 59999999999999999998764 8999
Q ss_pred HHHHHHHHHHHhHHHHHHHHhcCCCHH-HHHHHHcC---CCCCeeeeCCCCcccchhhcCcccCchHHHHHHHHHHHHHH
Q 024036 180 KIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQ---ENPDLEYDPPRDEYVDAVKSAIVDPPLKLIRNELDDAVSYF 255 (273)
Q Consensus 180 q~gi~~~a~AL~~pp~~La~NaG~d~~-vv~kl~~~---~~~~~G~d~~~g~~~Dm~~~GI~DP~~~Vk~~al~~A~~~A 255 (273)
++++++|++||+.||++|++|||+|+. ++.+|++. +..++|+|..+|++.||++.||||| +.||+++++.|+++|
T Consensus 375 ~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~g~d~~~~~~~d~~~~gI~dp-~~vk~~~l~~A~e~a 453 (464)
T cd00309 375 QLGIEAFADALEVIPRTLAENAGLDPIEVVTKLRAKHAEGGGNAGGDVETGEIVDMKEAGIIDP-LKVKRQALKSATEAA 453 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhccCCCeeEECCCCcEeehhhccCeec-HHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 99999864 2347899999999999999999999 999999999999999
Q ss_pred HHHHhhHHHhh
Q 024036 256 VSRWCSTEKLQ 266 (273)
Q Consensus 256 ~~lL~~~e~i~ 266 (273)
++||.+|++|.
T Consensus 454 ~~iL~id~ii~ 464 (464)
T cd00309 454 SLILTIDDIIV 464 (464)
T ss_pred HHHHhHHHHhC
Confidence 99999999873
No 34
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.2e-41 Score=310.74 Aligned_cols=204 Identities=15% Similarity=0.224 Sum_probs=192.3
Q ss_pred hhhhhHHHHHHHHhCCeEecccCCCCCCCCCceecceEE---EccCcEEEEcCCCChhhHHHHHHHHHHHHhhccCHHHH
Q 024036 29 ENCKAIMRDIAILTGGRVVTAASNSLYIPLMLGSCKKVK---VTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEI 105 (273)
Q Consensus 29 ~~~k~~ledia~~tG~~iv~~~~~~~~~~~~LG~a~~v~---~~~~~~~~i~g~~~~~~i~~ri~~l~~~i~~~~s~~e~ 105 (273)
++.+++|.|...+|||++.++. .++.++.||.|..++ ++.+.+.+|+||+.
T Consensus 313 RV~~eDl~Rv~~acGGsi~tt~--~~i~~~~LG~C~~FeE~QvG~eRyN~Fegcp~------------------------ 366 (543)
T KOG0361|consen 313 RVPEEDLNRVMQACGGSIQTTV--SDIKEEVLGTCALFEERQVGGERYNLFEGCPK------------------------ 366 (543)
T ss_pred cCCHHHHHHHHHhcCcchhhhh--hhcchhhcchhhhHHHHhhcchhhhhhcCCCc------------------------
Confidence 7889999999999999999988 899999999999886 46788888888865
Q ss_pred HHHHHHHHhhcCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-ccccCcHHHHHHHHHHhccCCC-ChhHHHHH
Q 024036 106 KLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEG-IIPGGGVALLHASEELEKLPAM-NIGEKIGV 183 (273)
Q Consensus 106 ~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~l~DAl~a~r~al~~g-vVpGGGaael~~s~~L~~~~~~-~~~~q~gi 183 (273)
.+.||+++||+-++.++|.+|++|||++++|.|++.. +|+|||+.||++|+.|+++... .+++|+-+
T Consensus 367 -----------aktcTliLRGgaeqfieE~eRSlHDAImIVrralkn~~vVaGGGaiEMElSk~lRd~S~ti~gK~q~~i 435 (543)
T KOG0361|consen 367 -----------AKTCTLILRGGAEQFIEETERSLHDAIMIVRRALKNDSVVAGGGAIEMELSKYLRDYSRTIAGKQQLFI 435 (543)
T ss_pred -----------cceeEEEEeccHHHHHHHHhhhhhhHHHHHHHHhccCcEeeCCceeeehHHHHHHHhhcccCcHHHHHH
Confidence 3579999999999999999999999999999999986 9999999999999999999877 89999999
Q ss_pred HHHHHHHhHHHHHHHHhcCCCHH-HHHHHHcC---CCCCeeeeCCCCcccchhhcCcccCchHHHHHHHHHHHHHHHHHH
Q 024036 184 KLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQ---ENPDLEYDPPRDEYVDAVKSAIVDPPLKLIRNELDDAVSYFVSRW 259 (273)
Q Consensus 184 ~~~a~AL~~pp~~La~NaG~d~~-vv~kl~~~---~~~~~G~d~~~g~~~Dm~~~GI~DP~~~Vk~~al~~A~~~A~~lL 259 (273)
.+|++||+.||++||+|||+|.. +++||+.. +..|+|+|..++.+.|+++.+|||| ..||.+++..|+++|+++|
T Consensus 436 ~A~akalEvIPrqLc~NaGfDa~~ilnkLR~rHA~G~~w~Gvdi~~e~i~dn~~~~VwEP-~~VK~Nai~aateAa~lIl 514 (543)
T KOG0361|consen 436 NAYAKALEVIPRQLCDNAGFDATNILNKLRQRHAQGEKWYGVDINTEGIADNFEKFVWEP-SIVKINAITAATEAACLIL 514 (543)
T ss_pred HHHHHHHHHhHHHHhhhcCCcHHHHHHHHHHHhhcCCceeeeeecccchhhHHHhhccCh-HHHHHHHHHHHHHhhhheE
Confidence 99999999999999999999999 99999864 6789999999999999999999999 9999999999999999999
Q ss_pred hhHHHhhccCC
Q 024036 260 CSTEKLQRQKG 270 (273)
Q Consensus 260 ~~~e~i~~~~~ 270 (273)
++||+|++++.
T Consensus 515 svDeTikn~~S 525 (543)
T KOG0361|consen 515 SVDETIKNPKS 525 (543)
T ss_pred ehhhhhcCCcc
Confidence 99999999983
No 35
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=100.00 E-value=6.5e-39 Score=311.28 Aligned_cols=214 Identities=27% Similarity=0.377 Sum_probs=194.7
Q ss_pred hhcccchhhhhhhhhhhHHHHHHHHhCCeEecccCCCCCCCCCceecceE---EEccCcEEEEcC--CCChhhHHHHHHH
Q 024036 17 AVYGENCELVYEENCKAIMRDIAILTGGRVVTAASNSLYIPLMLGSCKKV---KVTNNEMIIHGG--SGNQVYIEDRCEQ 91 (273)
Q Consensus 17 ~~~~~~~~~~~~~~~k~~ledia~~tG~~iv~~~~~~~~~~~~LG~a~~v---~~~~~~~~~i~g--~~~~~~i~~ri~~ 91 (273)
...-.|--.+++++++++|++||.+||++++++. ++++++++|+|+.+ .+++++++++.+ +
T Consensus 261 ~~l~~~~I~~i~~v~~~~l~~i~~~tg~~ii~~~--~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~------------ 326 (485)
T PF00118_consen 261 QYLNKNGILVIRRVSKEDLERIARATGASIISSL--DDLSDEDLGFCKSVEEREIGNKKYIFIEGIGC------------ 326 (485)
T ss_dssp HHHHHCTHEEESSEHHHHHHHHHHHHTSBEBSSC--GGSTGGGSEEEEEEEEEEETSSEEEEEEEHSE------------
T ss_pred hhhhhhhhhccccchHHHHHhhhcccCCcEeccc--ccccchhhhhhhhhhhcccccccccccccccc------------
Confidence 3344556678889999999999999999999998 88888889999999 678888999884 2
Q ss_pred HHHHHhhccCHHHHHHHHHHHHhhcCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-ccccCcHHHHHHHHHHh
Q 024036 92 LSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEG-IIPGGGVALLHASEELE 170 (273)
Q Consensus 92 l~~~i~~~~s~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~l~DAl~a~r~al~~g-vVpGGGaael~~s~~L~ 170 (273)
..++.+||+|||+|+.+++|++|+++||+++++++++++ +|||||++|++++.+|+
T Consensus 327 -----------------------~~~~~~Till~g~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~e~~l~~~L~ 383 (485)
T PF00118_consen 327 -----------------------LSSKICTILLRGPTEFELEERERSIHDALKVLRSALKDGGVVPGGGATELHLSKALR 383 (485)
T ss_dssp -----------------------SSSSEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHSSEEEETTTHHHHHHHHHHH
T ss_pred -----------------------cccCceEEEeccccchhHHHHHHHHHHHHHHHHHhccCCceeecCcchhhhhhhhHH
Confidence 246789999999999999999999999999999999975 99999999999999998
Q ss_pred ccCCC-ChhHHHHHHHHHHHHhHHHHHHHHhcCCCHH-HHHHHHc--CCCCCeeeeCCCCcccchhhcCcccCchHHHHH
Q 024036 171 KLPAM-NIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLG--QENPDLEYDPPRDEYVDAVKSAIVDPPLKLIRN 246 (273)
Q Consensus 171 ~~~~~-~~~~q~gi~~~a~AL~~pp~~La~NaG~d~~-vv~kl~~--~~~~~~G~d~~~g~~~Dm~~~GI~DP~~~Vk~~ 246 (273)
++... ++++++++++|++||+.||++|++|||+|+. ++++|+. ..+.++|||..+|++.||++.||||| +.+|++
T Consensus 384 ~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~h~~~~~~g~d~~~~~i~~~~~~gi~dp-~~~k~~ 462 (485)
T PF00118_consen 384 KYAKSLSGKEQLAIEAFADALESIPKTLAQNAGLDSSEVISKLKSFHNNGNNYGIDLDTGEIVDMKEAGILDP-LLVKIS 462 (485)
T ss_dssp HHHHCSSSHHHHHHHHHHHHTTHHHHHHHHHTTSTHHHHHHHHHHHHHSTTTEEEETTTTEEEETTTTTCEEE-HHHHHH
T ss_pred HhhhcccCchhhhHHHHHHHHHHhhhhhhhccCCCceeeehhhHhhhccccccCcCccCCceeccccccchhh-HHHHHH
Confidence 76654 7899999999999999999999999999999 9999988 34469999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHhhHHHhhcc
Q 024036 247 ELDDAVSYFVSRWCSTEKLQRQ 268 (273)
Q Consensus 247 al~~A~~~A~~lL~~~e~i~~~ 268 (273)
+++.|+++|++||.+|++|...
T Consensus 463 ~l~~A~~~a~~iL~id~iI~~~ 484 (485)
T PF00118_consen 463 ALKSAVEIASLILRIDEIIMAK 484 (485)
T ss_dssp HHHHHHHHHHHHHTEEEEEEES
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999998764
No 36
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.9e-40 Score=297.95 Aligned_cols=215 Identities=16% Similarity=0.172 Sum_probs=198.5
Q ss_pred hcccchhhhhhhhhhhHHHHHHHHhCCeEecccCCCCCCCCCceecceEEE-----ccCcEEEEcCCCChhhHHHHHHHH
Q 024036 18 VYGENCELVYEENCKAIMRDIAILTGGRVVTAASNSLYIPLMLGSCKKVKV-----TNNEMIIHGGSGNQVYIEDRCEQL 92 (273)
Q Consensus 18 ~~~~~~~~~~~~~~k~~ledia~~tG~~iv~~~~~~~~~~~~LG~a~~v~~-----~~~~~~~i~g~~~~~~i~~ri~~l 92 (273)
+.=+|--+|+|++.--++|-||++|||+++.++ ++++++.||+|+.|.. ++|++.+++.|+++
T Consensus 172 ll~~n~lpavrwVGGpEiEliAiaT~grIVprF--~eL~~~kLG~aglVrE~sfgttkdkmlviEqc~ns---------- 239 (400)
T KOG0357|consen 172 LLLQNNLPAVRWVGGPEIELIAIATGGRIVPRF--SELTAEKLGFAGLVREISFGTTKDKMLVIEQCKNS---------- 239 (400)
T ss_pred HHhhcCCCceeecCCcceEEEEeecCCeeeccH--hhhCHhhccccceEEEEecccccceEEEEEecCCC----------
Confidence 344677789999999999999999999999999 9999999999998864 68899999999874
Q ss_pred HHHHhhccCHHHHHHHHHHHHhhcCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-ccccCcHHHHHHHHHHhc
Q 024036 93 SDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEG-IIPGGGVALLHASEELEK 171 (273)
Q Consensus 93 ~~~i~~~~s~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~l~DAl~a~r~al~~g-vVpGGGaael~~s~~L~~ 171 (273)
++.||.+||++..+++|.||++|||||++||.+++. +|.|||++|+.||..+.+
T Consensus 240 -------------------------kaVTifvRg~Nkmii~EakrslhdalCvirnlird~rivYgGGaaEiscslav~~ 294 (400)
T KOG0357|consen 240 -------------------------KAVTIFVRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQ 294 (400)
T ss_pred -------------------------ceEEEEEecCcceeHHHHHHHhhhhHHHHHHHhhcCeeEecCchHHhhhhhHhhH
Confidence 568999999999999999999999999999999986 999999999999999988
Q ss_pred cCCC-ChhHHHHHHHHHHHHhHHHHHHHHhcCCCHH-HHHHHHcC----CCCCeeeeCCCCcccchhhcCcccCchHHHH
Q 024036 172 LPAM-NIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQ----ENPDLEYDPPRDEYVDAVKSAIVDPPLKLIR 245 (273)
Q Consensus 172 ~~~~-~~~~q~gi~~~a~AL~~pp~~La~NaG~d~~-vv~kl~~~----~~~~~G~d~~~g~~~Dm~~~GI~DP~~~Vk~ 245 (273)
-+.. ++.+||++++|++||+.||..||+|+|++|+ .++++++. .++.+|+|+....-.||.+.+++|| +..|+
T Consensus 295 ead~~~g~eqya~rafa~ale~ipmalaensgl~pi~~ls~~ka~q~~~~~~~lGidcl~~G~nDMk~~~vie~-l~~Kk 373 (400)
T KOG0357|consen 295 EADKIPGIEQYAFRAFADALESIPMALAENSGLDPIETLSDVKARQVKEMNPALGIDCLHKGTNDMKEQHVIET-LIGKK 373 (400)
T ss_pred hhccCCcHHHHHHHHHHHHHhhcchhhhhccCCCchhhhhHhHHHHHHhcCcccCcchhccCchhhhhhccHHH-hhhhH
Confidence 7766 8999999999999999999999999999999 99999864 5789999999888899999999999 99999
Q ss_pred HHHHHHHHHHHHHHhhHHHhhccCC
Q 024036 246 NELDDAVSYFVSRWCSTEKLQRQKG 270 (273)
Q Consensus 246 ~al~~A~~~A~~lL~~~e~i~~~~~ 270 (273)
+.+..|++++.|+|-+|++++.-..
T Consensus 374 qQi~laTQ~vrMiLKiddv~~~~~~ 398 (400)
T KOG0357|consen 374 QQISLATQMVRMILKIDDVRKPGES 398 (400)
T ss_pred HHHHHHHHHHHHhhhccceecCCCC
Confidence 9999999999999999998876543
No 37
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-37 Score=285.56 Aligned_cols=208 Identities=18% Similarity=0.251 Sum_probs=193.3
Q ss_pred hhhhhhhhhhhHHHHHHHHhCCeEecccCCCCCCCCCceecceEE---EccCcEEEEcCCCChhhHHHHHHHHHHHHhhc
Q 024036 23 CELVYEENCKAIMRDIAILTGGRVVTAASNSLYIPLMLGSCKKVK---VTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMS 99 (273)
Q Consensus 23 ~~~~~~~~~k~~ledia~~tG~~iv~~~~~~~~~~~~LG~a~~v~---~~~~~~~~i~g~~~~~~i~~ri~~l~~~i~~~ 99 (273)
--.+|++..-+-+|||+..|||.++|.+ ++++...||+|+.++ +++++++-|.|+.-
T Consensus 303 gi~aIEHADFdGiERLalvtGGeI~STF--d~p~~~klG~C~~IeeimiGed~li~FSGv~~------------------ 362 (527)
T KOG0363|consen 303 GIMAIEHADFDGIERLALVTGGEIVSTF--DNPELVKLGECDLIEEIMIGEDKLIKFSGVKL------------------ 362 (527)
T ss_pred CcceeecccchhHHHHhhcccceeeecc--CCcchhccccchhhHHHhcCccceeeeccccc------------------
Confidence 3457888889999999999999999999 999999999998775 68899888888742
Q ss_pred cCHHHHHHHHHHHHhhcCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-ccccCcHHHHHHHHHHhccCCC-Ch
Q 024036 100 TSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEG-IIPGGGVALLHASEELEKLPAM-NI 177 (273)
Q Consensus 100 ~s~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~l~DAl~a~r~al~~g-vVpGGGaael~~s~~L~~~~~~-~~ 177 (273)
|..|||++||+|++.+||.+|++|||||+....+++. +|.|||++||.+++.+.+++.. .|
T Consensus 363 -----------------GeActIVlrGat~q~LDEaeRslHDALcVLaqtv~esrvv~GgG~sEm~Ma~av~~~A~~~pG 425 (527)
T KOG0363|consen 363 -----------------GEACTIVLRGATQQILDEAERSLHDALCVLAQTVKESRVVLGGGCSEMLMAKAVDKEAQETPG 425 (527)
T ss_pred -----------------ccceEEEEecccHHHHHHHHHHHHHHHHHHHHHhccceeeecCCcHHHHHHHHHHHHHhhCCc
Confidence 5689999999999999999999999999999999886 9999999999999999998776 89
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHhcCCCHH-HHHHHHcC---CCCCeeeeCCCCcccchhhcCcccCchHHHHHHHHHHHH
Q 024036 178 GEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQ---ENPDLEYDPPRDEYVDAVKSAIVDPPLKLIRNELDDAVS 253 (273)
Q Consensus 178 ~~q~gi~~~a~AL~~pp~~La~NaG~d~~-vv~kl~~~---~~~~~G~d~~~g~~~Dm~~~GI~DP~~~Vk~~al~~A~~ 253 (273)
++..++++|++||.++|.+||.|+|||+. ++.+|++. +..++|+|+.+|.+.||.+.||+|+ ++||++.+.+|.+
T Consensus 426 kea~AieAfarAL~qlPtiiaDNaG~dsaelva~Lra~h~~g~~t~Gld~~~G~i~dm~~~Gi~es-~~vK~~vv~sasE 504 (527)
T KOG0363|consen 426 KEALAIEAFARALRQLPTIIADNAGYDSAELVAQLRAEHYNGRTTMGLDVRNGEIGDMRELGIVES-LKVKQAVVSSASE 504 (527)
T ss_pred hhhHHHHHHHHHHHhcchhhhccCCCCHHHHHHHHHHHhhcCCcccccccccCchhhHHHhhhHHH-HHHHHHHHhhhHH
Confidence 99999999999999999999999999999 99999974 5678999999999999999999999 9999999999999
Q ss_pred HHHHHHhhHHHhhcc
Q 024036 254 YFVSRWCSTEKLQRQ 268 (273)
Q Consensus 254 ~A~~lL~~~e~i~~~ 268 (273)
.|.+||.+|++|+..
T Consensus 505 aae~ilrvD~Iik~a 519 (527)
T KOG0363|consen 505 AAEMILRVDNIIKAA 519 (527)
T ss_pred HHHHHHhhhhhhhcC
Confidence 999999999999853
No 38
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-36 Score=277.29 Aligned_cols=205 Identities=17% Similarity=0.216 Sum_probs=188.7
Q ss_pred hhhhhhhhhHHHHHHHHhCCeEecccCCCCCCCCCceecceEEEc----cCcEEEEcCCCChhhHHHHHHHHHHHHhhcc
Q 024036 25 LVYEENCKAIMRDIAILTGGRVVTAASNSLYIPLMLGSCKKVKVT----NNEMIIHGGSGNQVYIEDRCEQLSDAIEMST 100 (273)
Q Consensus 25 ~~~~~~~k~~ledia~~tG~~iv~~~~~~~~~~~~LG~a~~v~~~----~~~~~~i~g~~~~~~i~~ri~~l~~~i~~~~ 100 (273)
.+++++.++++|.+|+.+|++++.+. +-++++.||+++.++.+ +++.+-+.|..++
T Consensus 318 mvikdieRediefick~l~c~Pia~i--d~f~~d~Lg~adlveE~~~~G~gkivk~tg~~n~------------------ 377 (534)
T KOG0358|consen 318 MVIKDIEREDIEFICKTLGCKPIADI--DHFTADKLGSADLVEETDSSGEGKIVKITGIQNA------------------ 377 (534)
T ss_pred EEEccccHhhHHHHHhhcCCeecchh--hhcChhhcCcchhhhhcccCCCccEEEEEEeecC------------------
Confidence 46779999999999999999999998 99999999999988753 4477777776442
Q ss_pred CHHHHHHHHHHHHhhcCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-ccccCcHHHHHHHHHHhccCCC-Chh
Q 024036 101 SDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEG-IIPGGGVALLHASEELEKLPAM-NIG 178 (273)
Q Consensus 101 s~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~l~DAl~a~r~al~~g-vVpGGGaael~~s~~L~~~~~~-~~~ 178 (273)
|..++|++||++...++|.+|++|||||++|+.++.. ++||||+.||.++..|.+++.. .|.
T Consensus 378 ----------------g~tvsil~RGsn~lvleEaeRSlhDALCVirCLvk~r~li~GGGapEieia~~L~~~a~t~eG~ 441 (534)
T KOG0358|consen 378 ----------------GRTVSILLRGSNKLVLEEAERSLHDALCVIRCLVKKRALIAGGGAPEIEIALRLSALARTLEGV 441 (534)
T ss_pred ----------------CCceEEEEecCchhhhHHHhhhhhhhhHHHHhhhhccceecCCCCcchHHHHHHHHHHhhhccc
Confidence 6789999999999999999999999999999999875 9999999999999999998776 788
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhcCCCHH-HHHHHHcC---CCCCeeeeCCCCcccchhhcCcccCchHHHHHHHHHHHHH
Q 024036 179 EKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQ---ENPDLEYDPPRDEYVDAVKSAIVDPPLKLIRNELDDAVSY 254 (273)
Q Consensus 179 ~q~gi~~~a~AL~~pp~~La~NaG~d~~-vv~kl~~~---~~~~~G~d~~~g~~~Dm~~~GI~DP~~~Vk~~al~~A~~~ 254 (273)
+.|++++|++||+.+|.+||+|||+||. +++.||+. +..+.|+++++|.+.||++..|+.| +.|..+++..|++.
T Consensus 442 ~~yc~rafA~AlEvIP~tLAeNAGLnpI~~VtELRn~haqge~~aGInVRkg~~tni~ee~VvQP-llVs~SaitlA~Et 520 (534)
T KOG0358|consen 442 EAYCWRAFADALEVIPYTLAENAGLNPIATVTELRNRHAQGEKNAGINVRKGGITNILEENVVQP-LLVSISAITLATET 520 (534)
T ss_pred hhHHHHHHHHHHhcccHhHHhhCCCChhhHHHHHHHHHhcCCcccceeeecccchhhHHHhcccc-eeeeHHHHHHHHHH
Confidence 9999999999999999999999999999 99999974 5678999999999999999999999 99999999999999
Q ss_pred HHHHHhhHHHhh
Q 024036 255 FVSRWCSTEKLQ 266 (273)
Q Consensus 255 A~~lL~~~e~i~ 266 (273)
+.+||-+||++.
T Consensus 521 vr~ILKIDDIv~ 532 (534)
T KOG0358|consen 521 VRSILKIDDIVN 532 (534)
T ss_pred HHHHhhhhhhcc
Confidence 999999999874
No 39
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7e-33 Score=259.46 Aligned_cols=214 Identities=17% Similarity=0.182 Sum_probs=199.0
Q ss_pred hcccchhhhhhhhhhhHHHHHHHHhCCeEecccCCCCCCCCCceecceEEE---ccCcEEEEcCCCChhhHHHHHHHHHH
Q 024036 18 VYGENCELVYEENCKAIMRDIAILTGGRVVTAASNSLYIPLMLGSCKKVKV---TNNEMIIHGGSGNQVYIEDRCEQLSD 94 (273)
Q Consensus 18 ~~~~~~~~~~~~~~k~~ledia~~tG~~iv~~~~~~~~~~~~LG~a~~v~~---~~~~~~~i~g~~~~~~i~~ri~~l~~ 94 (273)
++-++--+|.|+.++.+||||..+|||..++++ +++++++||+|+.|.. ++++++|++++.+|
T Consensus 296 ~~a~~gIlaLRRAKRRNmERL~lacGG~a~nsv--ddLtp~~LG~aglVye~tlGEEkfTFIE~~~~p------------ 361 (520)
T KOG0359|consen 296 SLAKSGILALRRAKRRNMERLVLACGGEAVNSV--DDLTPDYLGYAGLVYEYTLGEEKFTFIEKCNNP------------ 361 (520)
T ss_pred hhhhcchHHHHHHhhhhHHHHHHhhccceeccc--ccCChhhccccceeEEeeccceeeEeeecCCCC------------
Confidence 667788899999999999999999999999999 9999999999999964 79999999999885
Q ss_pred HHhhccCHHHHHHHHHHHHhhcCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-ccccCcHHHHHHHHHHhccC
Q 024036 95 AIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEG-IIPGGGVALLHASEELEKLP 173 (273)
Q Consensus 95 ~i~~~~s~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~l~DAl~a~r~al~~g-vVpGGGaael~~s~~L~~~~ 173 (273)
++|||+++|+|++.+-+.++.++|+|++++++++++ ++||+|+.|++++.+|....
T Consensus 362 -----------------------~S~TiLikgpnkht~tQikdairdglrav~ntl~d~~~i~Gaga~~va~~~~lr~~k 418 (520)
T KOG0359|consen 362 -----------------------SSVTILIKGPNKHTITQIKDAIRDGLRAVKNTLEDKCGIPGAGAFEVALGRHLRESK 418 (520)
T ss_pred -----------------------cceEEEEeCCccchHHHHHHHHhhHHHHHHHHhhhcccccCchHHHHHHHHHHHHhh
Confidence 569999999999999999999999999999999997 99999999999999999877
Q ss_pred CC-ChhHHHHHHHHHHHHhHHHHHHHHhcCCCHH-HHHHHHcCC-CCCeeeeCCCCcccchhhcCcccCchHHHHHHHHH
Q 024036 174 AM-NIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQE-NPDLEYDPPRDEYVDAVKSAIVDPPLKLIRNELDD 250 (273)
Q Consensus 174 ~~-~~~~q~gi~~~a~AL~~pp~~La~NaG~d~~-vv~kl~~~~-~~~~G~d~~~g~~~Dm~~~GI~DP~~~Vk~~al~~ 250 (273)
.. .++.++|+++|++||..+|++|++|+|+|+. .+.+|.... ....|+|..+|+..+....||||. +.|+++.|.+
T Consensus 419 ~~vkgra~~g~~afa~all~ipk~La~nsg~D~qe~l~~l~~e~~~~~~g~dl~~g~~~~~~~~gi~Dn-y~v~~~~l~s 497 (520)
T KOG0359|consen 419 KSVKGRAYLGVKAFANALLVIPKTLAKNSGLDEQETLVSLKKEHEVTLRGLDLFRGEECDPSRKGIYDN-YSVKKQLLRS 497 (520)
T ss_pred hccCchhhhhHHHHHhhhhhhhHHHHHhcCCchHHHHHHHHHhhhhhhcccccccCCccchhhccccch-HHHHHHHhhh
Confidence 65 8999999999999999999999999999999 888887652 224699999999999999999999 9999999999
Q ss_pred HHHHHHHHHhhHHHhhccC
Q 024036 251 AVSYFVSRWCSTEKLQRQK 269 (273)
Q Consensus 251 A~~~A~~lL~~~e~i~~~~ 269 (273)
++-+|+.||+.||+|++-+
T Consensus 498 ~~via~nlLlvDEi~rAG~ 516 (520)
T KOG0359|consen 498 EAVIATNLLLVDEIIRAGM 516 (520)
T ss_pred hHHHHHHHHHHHHHHHccc
Confidence 9999999999999998754
No 40
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.1e-34 Score=266.88 Aligned_cols=213 Identities=17% Similarity=0.153 Sum_probs=193.1
Q ss_pred chhhhhhhhhhhHHHHHHHHhCCeEecccCCCCCCCCCce-ecceEEE---ccCcEEEEcCCCChhhHHHHHHHHHHHHh
Q 024036 22 NCELVYEENCKAIMRDIAILTGGRVVTAASNSLYIPLMLG-SCKKVKV---TNNEMIIHGGSGNQVYIEDRCEQLSDAIE 97 (273)
Q Consensus 22 ~~~~~~~~~~k~~ledia~~tG~~iv~~~~~~~~~~~~LG-~a~~v~~---~~~~~~~i~g~~~~~~i~~ri~~l~~~i~ 97 (273)
+---++|+.||.+..+||++||++++++. +++.+.+.| .|+.+++ +++.|+||..|.+|
T Consensus 303 ~~iT~~rr~rKtDn~ria~acga~iv~rp--edl~e~dvGt~agLf~~kK~gdeyf~f~~~Ck~p--------------- 365 (527)
T KOG0364|consen 303 ANITAIRRLRKTDNNRIARACGARIVNRP--EDLPERDVGTGAGLFEVKKIGDEYFTFFTDCKEP--------------- 365 (527)
T ss_pred cCchhhhhhhccccchhhhhcCceeccCh--hhCchhccCcccceeeeeccCchhhhhhhhcCCC---------------
Confidence 33457899999999999999999999998 999999999 5777765 67789999999876
Q ss_pred hccCHHHHHHHHHHHHhhcCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-ccccCcHHHHHHHHHHhccCC-C
Q 024036 98 MSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEG-IIPGGGVALLHASEELEKLPA-M 175 (273)
Q Consensus 98 ~~~s~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~l~DAl~a~r~al~~g-vVpGGGaael~~s~~L~~~~~-~ 175 (273)
++|||++||+|..+++|.+|.+.||+.+.|+.+-++ ++||||++||+.|..|.+-.. .
T Consensus 366 --------------------kaCtillrg~skdil~e~ernlqda~~varn~ii~PklvPGGGAtEMAvs~~L~qksa~~ 425 (527)
T KOG0364|consen 366 --------------------KACTILLRGPSKDILNEVERNLQDAMGVARNVIINPKLVPGGGATEMAVSHELRQKSALM 425 (527)
T ss_pred --------------------cceEEEeccCchhHHHHHHHHhhhHHHHHHHhccCCcccCCccHHHHHHHHHHHHHHhhc
Confidence 569999999999999999999999999999999998 999999999999999988544 4
Q ss_pred ChhHHHHHHHHHHHHhHHHHHHHHhcCCCHH-HHHHHHcC---CCCCeeeeCCCCcccchhhcCcccCchHHHHHHHHHH
Q 024036 176 NIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQ---ENPDLEYDPPRDEYVDAVKSAIVDPPLKLIRNELDDA 251 (273)
Q Consensus 176 ~~~~q~gi~~~a~AL~~pp~~La~NaG~d~~-vv~kl~~~---~~~~~G~d~~~g~~~Dm~~~GI~DP~~~Vk~~al~~A 251 (273)
++-+|+.+.+++.||+.+|++|++|+|.|+. .++.++.. +...+|+|.++|.++||.+.|+|+| ..||.++.++|
T Consensus 426 ~GVekwPY~Ava~AlEviPrtliqncGan~Ir~lTalr~kh~~G~~~~gi~g~tg~iVDm~~~~iwep-~~vK~Q~~kta 504 (527)
T KOG0364|consen 426 TGVEKWPYGAVAGALEVIPRTLIQNCGANPIRALTALRAKHKEGQRVWGIDGETGVIVDMVELGIWEP-EAVKLQTGKTA 504 (527)
T ss_pred cchhccchhhhhcCceeccHHHHhhcCccHHHHHHHHHHHhcCcceeecccCceeeEeeeeeccccch-hhhhhhhhhHH
Confidence 8899999999999999999999999999999 99988864 3457899999999999999999999 99999999999
Q ss_pred HHHHHHHHhhHHHhhccCCCC
Q 024036 252 VSYFVSRWCSTEKLQRQKGRV 272 (273)
Q Consensus 252 ~~~A~~lL~~~e~i~~~~~~~ 272 (273)
++++++||.+|+++---|-|+
T Consensus 505 vesa~~LLRIddIvsg~kk~v 525 (527)
T KOG0364|consen 505 VESACLLLRIDDIVSGKKKRV 525 (527)
T ss_pred HHHHHHHHhhhceeeeeeecc
Confidence 999999999999986655554
No 41
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-33 Score=262.70 Aligned_cols=219 Identities=19% Similarity=0.212 Sum_probs=198.9
Q ss_pred hhhcccchhhhhhhhhhhHHHHHHHHhCCeEecccCC----CCCCCCCceecceEE---EccCcEEEEcCCCChhhHHHH
Q 024036 16 KAVYGENCELVYEENCKAIMRDIAILTGGRVVTAASN----SLYIPLMLGSCKKVK---VTNNEMIIHGGSGNQVYIEDR 88 (273)
Q Consensus 16 ~~~~~~~~~~~~~~~~k~~ledia~~tG~~iv~~~~~----~~~~~~~LG~a~~v~---~~~~~~~~i~g~~~~~~i~~r 88 (273)
+..|-|---.|+|+..|++|+.||++||++++++... +.+++..||+|++|. +++|+++++.+.+.
T Consensus 300 ~K~~veagamAVrR~~k~dlk~iakatGat~~sSla~l~geetf~~~~lG~a~evvqeri~dde~ilikg~ka------- 372 (545)
T KOG0360|consen 300 LKYFVEAGAMAVRRCKKEDLKRIAKATGATLLSSLANLEGEETFEPASLGSADEVVQERIGDDELILIKGTKA------- 372 (545)
T ss_pred HHHHHHcchhhhHHHHHHHHHHHHHhhCCeeeehhhccccccccChhhccchhHHHHHhcccceeEEeccCcc-------
Confidence 3445555668999999999999999999999999742 678899999999984 68999999998542
Q ss_pred HHHHHHHHhhccCHHHHHHHHHHHHhhcCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-ccccCcHHHHHHHH
Q 024036 89 CEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEG-IIPGGGVALLHASE 167 (273)
Q Consensus 89 i~~l~~~i~~~~s~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~l~DAl~a~r~al~~g-vVpGGGaael~~s~ 167 (273)
.+|+|.+||++++.+||++|++|||||++|..++++ +|||||++|.+++.
T Consensus 373 -----------------------------~~aSiILrgaNd~~~DEmers~hdaL~VlkrtLes~~vvpGGG~vE~aLs~ 423 (545)
T KOG0360|consen 373 -----------------------------TSASIILRGANDFMLDEMERSLHDALCVLKRTLESKSVVPGGGAVETALSI 423 (545)
T ss_pred -----------------------------ceeeEEEecCCcccHhhhccchhhHHHHHHHHhccCccccCccHHHHHHHH
Confidence 369999999999999999999999999999999998 99999999999999
Q ss_pred HHhccCCC-ChhHHHHHHHHHHHHhHHHHHHHHhcCCCHH-HHHHHHcCC-----------CCCeeeeCCCCcccchhhc
Q 024036 168 ELEKLPAM-NIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQE-----------NPDLEYDPPRDEYVDAVKS 234 (273)
Q Consensus 168 ~L~~~~~~-~~~~q~gi~~~a~AL~~pp~~La~NaG~d~~-vv~kl~~~~-----------~~~~G~d~~~g~~~Dm~~~ 234 (273)
+|+.++.. ..++|..+..|+.||..+|++|+-||+.|+. ++.+++..+ ..++|+|..+|++.|.++.
T Consensus 424 yle~~a~s~~srE~laiaefa~all~ipktla~naa~Dstelvt~lra~Hs~~q~~p~~~~~k~~GldL~ng~~~dn~~~ 503 (545)
T KOG0360|consen 424 YLENFATSVGSREQLAIAEFAAALLSIPKTLAVNAAKDSTELVTKLRAYHSVSQDNPWRLLLKQYGLDLINGKIRDNKSA 503 (545)
T ss_pred HHHhhcccCccHHHHHHHHHHHHHhcchHHHhhhhccccccccccccCCchhhccCCccccchhhCccccccEeecceee
Confidence 99999876 6789999999999999999999999999999 999998631 2479999999999999999
Q ss_pred CcccCchHHHHHHHHHHHHHHHHHHhhHHHhhccCCC
Q 024036 235 AIVDPPLKLIRNELDDAVSYFVSRWCSTEKLQRQKGR 271 (273)
Q Consensus 235 GI~DP~~~Vk~~al~~A~~~A~~lL~~~e~i~~~~~~ 271 (273)
|+++| .-+|..+|+.|++.|..+|++|+-|+..++.
T Consensus 504 g~~ep-~~~kvksLk~ateaaitiLriD~li~l~~~~ 539 (545)
T KOG0360|consen 504 GSFEP-PIVKVKSLKFATEAAITILRIDDLIKLLPEL 539 (545)
T ss_pred eeecc-ceeehhhhHHHHHhhhhhcchhhhhhcCccc
Confidence 99999 9999999999999999999999999988775
No 42
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=6.8e-29 Score=235.85 Aligned_cols=208 Identities=20% Similarity=0.284 Sum_probs=184.2
Q ss_pred hhhhhhhhhHHHHHHHHhCCeEecccCCCCCCCCCceecceEE---EccCcEEEEcCCCChhhHHHHHHHHHHHHhhccC
Q 024036 25 LVYEENCKAIMRDIAILTGGRVVTAASNSLYIPLMLGSCKKVK---VTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTS 101 (273)
Q Consensus 25 ~~~~~~~k~~ledia~~tG~~iv~~~~~~~~~~~~LG~a~~v~---~~~~~~~~i~g~~~~~~i~~ri~~l~~~i~~~~s 101 (273)
+++|=.+|-+|.+||+..||++.++. ..+.+..||+|++|. ++++.+++|.....
T Consensus 306 mVlqi~Sk~eLrrlcrtvGA~~l~rl--~~P~~~~lG~~d~V~~~EiG~~~v~vF~~e~~-------------------- 363 (537)
T KOG0362|consen 306 MVLQINSKFDLRRLCRTVGATALPRL--FPPAPEELGYCDSVSTQEIGDTLVVVFRWEST-------------------- 363 (537)
T ss_pred EEEEeccHhhHHHHHHHcCCccchhc--cCCCCccccccceeeeeecCCceEEEEeeccC--------------------
Confidence 46667789999999999999999998 888889999999985 46677666654221
Q ss_pred HHHHHHHHHHHHhhcCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-ccccCcHHHHHHHHHHhccCCC-ChhH
Q 024036 102 DYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEG-IIPGGGVALLHASEELEKLPAM-NIGE 179 (273)
Q Consensus 102 ~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~l~DAl~a~r~al~~g-vVpGGGaael~~s~~L~~~~~~-~~~~ 179 (273)
.++++||++||+|+..+|+.||.++|++++.+..++++ ++||+|++|+++++.|.++... .|.+
T Consensus 364 --------------~~~~~TvVLRgst~s~LDd~ERAVddgV~tyK~l~~d~rLlpGagatEieLak~i~~~g~~~~Gl~ 429 (537)
T KOG0362|consen 364 --------------GTRVATVVLRGATQSILDDAERAVDDGVNTYKALCSDSRLLPGAGATEIELAKQISSRGATLPGLK 429 (537)
T ss_pred --------------CCceeEEEEcccchhhHHHHHHHHHHhHHHhhhhccCCccccCCchhHHHHHHHHHHhcccCCCcc
Confidence 14689999999999999999999999999999999987 9999999999999999998776 8999
Q ss_pred HHHHHHHHHHHhHHHHHHHHhcCCCHH-HHHHHHcC--CCCCeeeeCCCC-cccchhhcCcccCchHHHHHHHHHHHHHH
Q 024036 180 KIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQ--ENPDLEYDPPRD-EYVDAVKSAIVDPPLKLIRNELDDAVSYF 255 (273)
Q Consensus 180 q~gi~~~a~AL~~pp~~La~NaG~d~~-vv~kl~~~--~~~~~G~d~~~g-~~~Dm~~~GI~DP~~~Vk~~al~~A~~~A 255 (273)
|++|+.|++||+.+|++||+|||+++. ++.+|-.. +..+.|+|+... ...|+.+.||||- +.+|.++++.|+++|
T Consensus 430 q~Aik~fa~Ale~~PktlaEnagl~~~evia~ly~~h~~g~~~g~di~~e~~~~d~~~~~i~D~-~~~K~~a~k~at~aa 508 (537)
T KOG0362|consen 430 QLAIKKFAEALEVLPKTLAENAGLAVTEVIAKLYAVHQGGKNLGMDIEAEGGTIDVREEGIWDT-LAVKAQAIKLATEAA 508 (537)
T ss_pred hhHHHHHHHHhccccHhHHHhcCCcHHHHHHHHHHhhcCCCcceeeeeccccccChhhhchHHH-HHHHHHHHHHHHhhh
Confidence 999999999999999999999999999 99998753 345678888766 4889999999999 999999999999999
Q ss_pred HHHHhhHHHhhccC
Q 024036 256 VSRWCSTEKLQRQK 269 (273)
Q Consensus 256 ~~lL~~~e~i~~~~ 269 (273)
.++|.+|.+|-..+
T Consensus 509 ~tvl~vDqiimak~ 522 (537)
T KOG0362|consen 509 LTVLTVDQIIMAKK 522 (537)
T ss_pred heeeehhheeEecc
Confidence 99999999986543
No 43
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=99.54 E-value=2.8e-14 Score=125.04 Aligned_cols=92 Identities=26% Similarity=0.323 Sum_probs=80.7
Q ss_pred hhhhhhhhhhHHHHHHHHhCCeEecccCCCCCCCCCceecceEEEcc---CcEEEEcCCCChhhHHHHHHHHHHHHhhcc
Q 024036 24 ELVYEENCKAIMRDIAILTGGRVVTAASNSLYIPLMLGSCKKVKVTN---NEMIIHGGSGNQVYIEDRCEQLSDAIEMST 100 (273)
Q Consensus 24 ~~~~~~~~k~~ledia~~tG~~iv~~~~~~~~~~~~LG~a~~v~~~~---~~~~~i~g~~~~~~i~~ri~~l~~~i~~~~ 100 (273)
-.++++.++.+|+|||.+|||+++++. +++++++||+|+++++.. +.++++.++..
T Consensus 115 I~~v~~~~~~~l~~ia~~tga~ii~~~--~~~~~~~lG~~~~v~~~~~~~~~~~~~~~~~~------------------- 173 (209)
T cd03333 115 IMAVRRVKKEDLERIARATGATIVSSL--EDLTPEDLGTAELVEETKIGEEKLTFIEGCKG------------------- 173 (209)
T ss_pred CEEEEeCCHHHHHHHHHHHCCEEeccc--ccCChhhceeeeEEEEEEECCeEEEEEEcCCC-------------------
Confidence 456778889999999999999999997 888999999999998743 45778877643
Q ss_pred CHHHHHHHHHHHHhhcCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHc
Q 024036 101 SDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEE 152 (273)
Q Consensus 101 s~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~l~DAl~a~r~al~~ 152 (273)
++.|||+|||+|+.+++|.||+++||++++++++++
T Consensus 174 ----------------~~~~tIllrG~t~~~l~e~kr~l~dal~~~~~~~~~ 209 (209)
T cd03333 174 ----------------GKAATILLRGATEVELDEVKRSLHDALCAVRAAVEE 209 (209)
T ss_pred ----------------CCEEEEEEECCCHhHHHHHHHHHHHHHHHHHHHhhC
Confidence 467999999999999999999999999999999864
No 44
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=99.50 E-value=6.1e-14 Score=127.60 Aligned_cols=96 Identities=16% Similarity=0.224 Sum_probs=83.1
Q ss_pred chhhhhhhhhhhHHHHHHHHhCCeEecccCCCCCCCCCceecceEEE---cc-----CcEEEEcCCCChhhHHHHHHHHH
Q 024036 22 NCELVYEENCKAIMRDIAILTGGRVVTAASNSLYIPLMLGSCKKVKV---TN-----NEMIIHGGSGNQVYIEDRCEQLS 93 (273)
Q Consensus 22 ~~~~~~~~~~k~~ledia~~tG~~iv~~~~~~~~~~~~LG~a~~v~~---~~-----~~~~~i~g~~~~~~i~~ri~~l~ 93 (273)
+--.+++++++.+|++||++|||+++++.. +.+++++||+|+.|++ ++ .++++++++..+
T Consensus 151 ~gI~~v~~v~~~dl~rIa~~tGa~ii~~i~-~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~~----------- 218 (261)
T cd03334 151 AGITLVLNVKPSVLERISRCTGADIISSMD-DLLTSPKLGTCESFRVRTYVEEHGRSKTLMFFEGCPKE----------- 218 (261)
T ss_pred CCCEEEEecCHHHHHHHHHHhCCEEecChh-hhcCcccCcCcceEEEEEecCcCCCceeEEEEecCCCC-----------
Confidence 345788999999999999999999999931 6888899999999976 32 478999988642
Q ss_pred HHHhhccCHHHHHHHHHHHHhhcCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC
Q 024036 94 DAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEG 153 (273)
Q Consensus 94 ~~i~~~~s~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~l~DAl~a~r~al~~g 153 (273)
+++||+|||+|++.++|.||.++||+++++++..+.
T Consensus 219 ------------------------~~~TIlLRG~t~~~lde~eR~i~Dal~v~~~~~le~ 254 (261)
T cd03334 219 ------------------------LGCTILLRGGDLEELKKVKRVVEFMVFAAYHLKLET 254 (261)
T ss_pred ------------------------ceeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 579999999999999999999999999999998775
No 45
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=94.71 E-value=0.035 Score=60.58 Aligned_cols=98 Identities=18% Similarity=0.301 Sum_probs=76.4
Q ss_pred hhhhhHHHHHHHHhCCeEecccCCCCCCCCCceecceEEEcc--------CcEEEEcCCCChhhHHHHHHHHHHHHhhcc
Q 024036 29 ENCKAIMRDIAILTGGRVVTAASNSLYIPLMLGSCKKVKVTN--------NEMIIHGGSGNQVYIEDRCEQLSDAIEMST 100 (273)
Q Consensus 29 ~~~k~~ledia~~tG~~iv~~~~~~~~~~~~LG~a~~v~~~~--------~~~~~i~g~~~~~~i~~ri~~l~~~i~~~~ 100 (273)
+++...|+||++.||+.|+.+. +.++...||+|..+++.+ ...+++.||..+
T Consensus 472 nvK~s~leRIsR~tga~I~~si--Dslt~~klg~C~~F~v~~~~e~hk~sKTlmffegc~~~------------------ 531 (1598)
T KOG0230|consen 472 NVKRSLLERISRCTGADIVPSV--DSLTSQKLGYCELFRVENYVEEHKPSKTLMFFEGCPKP------------------ 531 (1598)
T ss_pred eccHHHHHHHHHHhcCceecch--hhhhccccCCCccHhhhhhhhcccchhhhHHhhcCCCC------------------
Confidence 6778889999999999999887 778889999999876521 124455665432
Q ss_pred CHHHHHHHHHHHHhhcCceEEEEecCCCHHHHHHHHHHHHHHHHHHH-HHHHcCccccCcHHHH
Q 024036 101 SDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAK-AAMEEGIIPGGGVALL 163 (273)
Q Consensus 101 s~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~l~DAl~a~r-~al~~gvVpGGGaael 163 (273)
..|||++||++..++.+.++=+.=.+-++- .+++.-++.--|+...
T Consensus 532 -----------------lG~TiLLrG~~~~eLkkVK~Vvq~~v~aay~l~LE~SflaDe~asi~ 578 (1598)
T KOG0230|consen 532 -----------------LGCTILLRGDSLEELKKVKHVVQYLVFAAYHLALETSFLADEGASIS 578 (1598)
T ss_pred -----------------CCceEEecCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccc
Confidence 358999999999999999998888877776 5566667777776554
No 46
>smart00574 POX domain associated with HOX domains.
Probab=66.60 E-value=22 Score=29.65 Aligned_cols=57 Identities=16% Similarity=0.079 Sum_probs=43.5
Q ss_pred CHHHHHHHHHHHHhhcCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-ccccCcHHHHHHHHHHh
Q 024036 101 SDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEG-IIPGGGVALLHASEELE 170 (273)
Q Consensus 101 s~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~l~DAl~a~r~al~~g-vVpGGGaael~~s~~L~ 170 (273)
+..|+..++.+.++|- ..++|.+++++--..-++.++... .|+|.|++-.+.+-+|+
T Consensus 68 s~~~r~e~q~kk~kLl-------------~mL~eVd~RY~qY~~qmq~v~ssFe~vaG~g~a~~yt~lAl~ 125 (140)
T smart00574 68 STAERQELQRKKAKLL-------------SMLEEVDRRYKHYYEQMQTVVSSFDQAAGLGAAKPYTALALK 125 (140)
T ss_pred chhHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 5567777877777775 467888888887777777777664 78999999888877664
No 47
>PF07526 POX: Associated with HOX; InterPro: IPR006563 This domain in found exclusively in plant proteins, associated with HOX domains which may suggest these proteins are homeodomain transcription factors.
Probab=52.43 E-value=44 Score=27.75 Aligned_cols=58 Identities=17% Similarity=0.118 Sum_probs=41.8
Q ss_pred CHHHHHHHHHHHHhhcCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-ccccCcHHHHHHHHHHhc
Q 024036 101 SDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEG-IIPGGGVALLHASEELEK 171 (273)
Q Consensus 101 s~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~l~DAl~a~r~al~~g-vVpGGGaael~~s~~L~~ 171 (273)
+.-++..++.+.++|- ..++|.+++++--..-++..+... .|.|.|++-.+.+-+|+.
T Consensus 68 s~~~~~e~q~kK~KLl-------------~mL~eVd~RY~qY~~Qmq~VvssFe~vaG~gaA~~YtalAlqa 126 (140)
T PF07526_consen 68 SPAERQELQRKKAKLL-------------SMLDEVDRRYRQYYDQMQAVVSSFEAVAGLGAAAPYTALALQA 126 (140)
T ss_pred ChhhHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHH
Confidence 4456667777777765 467777777777777777666664 689999998888876643
No 48
>PF08988 DUF1895: Protein of unknown function (DUF1895); InterPro: IPR015081 The YscE protein, produced by the pathogen Yersinia, assumes a secondary structure composed of two anti-parallel alpha-helices separated by a flexible loop. The function of this protein is, as yet, unknown. ; PDB: 1ZW0_B 2P58_A 2UWJ_E 2Q1K_D 3PH0_B.
Probab=43.54 E-value=29 Score=25.29 Aligned_cols=54 Identities=24% Similarity=0.258 Sum_probs=22.2
Q ss_pred HHHHhhccCHHHHHHHHHHHHhhcCceEEEEecCCCHHHHHHHHHHHHHHHHHHHH
Q 024036 93 SDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKA 148 (273)
Q Consensus 93 ~~~i~~~~s~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~l~DAl~a~r~ 148 (273)
++.+.. .++.++..|..+|.-....+=-.+-+|.++.+-.... ..+||+-++.+
T Consensus 5 E~~L~~-~~~~~~~~i~~~L~~a~~~vkr~L~~G~~P~eyQq~q-~~~~AieAA~~ 58 (68)
T PF08988_consen 5 EQRLSN-ASGEEARAIEQQLRQAQSQVKRKLDRGGTPQEYQQLQ-QQYDAIEAAIA 58 (68)
T ss_dssp HHHHTC-TSHHHHHHHHHHHHHHHHHHHHHHTCTSSHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHh-ccHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH-HHHHHHHHHHH
Confidence 333433 4444444444444443332222333444444444333 33444444443
No 49
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=41.45 E-value=2.9e+02 Score=25.54 Aligned_cols=22 Identities=23% Similarity=0.173 Sum_probs=18.3
Q ss_pred hhhhhHHHHHHHHhCCeEeccc
Q 024036 29 ENCKAIMRDIAILTGGRVVTAA 50 (273)
Q Consensus 29 ~~~k~~ledia~~tG~~iv~~~ 50 (273)
+.++..+++.+...|...+.-.
T Consensus 108 ~~~r~~~~~a~~~ag~~~~~li 129 (336)
T PRK13928 108 SVEKRAVREAAEQAGAKKVYLI 129 (336)
T ss_pred HHHHHHHHHHHHHcCCCceEec
Confidence 8899999999999998866444
No 50
>PLN02512 acetylglutamate kinase
Probab=37.15 E-value=79 Score=29.43 Aligned_cols=48 Identities=19% Similarity=0.344 Sum_probs=28.1
Q ss_pred HHHhhcCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC--ccccCcH
Q 024036 111 RLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEG--IIPGGGV 160 (273)
Q Consensus 111 Rl~~l~g~~atI~vgG~te~~l~E~er~l~DAl~a~r~al~~g--vVpGGGa 160 (273)
.+.++.++...|++||+.-.. ++...++.+.+...+ ..... +|.|||.
T Consensus 41 yi~~~~~~tiVIKlGGs~i~d-~~~~~~~~~di~~l~-~~g~~iVlVHGgG~ 90 (309)
T PLN02512 41 FIQRFRGKTVVVKYGGAAMKD-PELKAGVIRDLVLLS-CVGLRPVLVHGGGP 90 (309)
T ss_pred HHHHHCCCeEEEEECCeeccC-hhHHHHHHHHHHHHH-HCCCCEEEEECCcH
Confidence 456788999999999977221 123333444443222 12122 6899988
No 51
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=32.12 E-value=47 Score=30.56 Aligned_cols=27 Identities=15% Similarity=0.260 Sum_probs=24.6
Q ss_pred EEEEecCCCHHHHHHHHHHHHHHHHHHH
Q 024036 120 AILKVGGATTAESRKKRKRATNALNAAK 147 (273)
Q Consensus 120 atI~vgG~te~~l~E~er~l~DAl~a~r 147 (273)
.||++.| ++-.+++.+|.|+|-+++.+
T Consensus 121 mTIVl~G-td~VveQa~rQiedlVnV~a 147 (309)
T KOG2663|consen 121 MTIVLQG-TDGVVEQARRQIEDLVNVYA 147 (309)
T ss_pred ceEEEec-cHHHHHHHHHHHHHhhhhhe
Confidence 4899999 78899999999999999985
No 52
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=31.99 E-value=4.3e+02 Score=24.74 Aligned_cols=65 Identities=20% Similarity=0.130 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhhcCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC--ccccCcHHHHHHHHHHhccC
Q 024036 103 YEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEG--IIPGGGVALLHASEELEKLP 173 (273)
Q Consensus 103 ~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~l~DAl~a~r~al~~g--vVpGGGaael~~s~~L~~~~ 173 (273)
..-.++=+.++++.|. ....+..+++.++++.+++.-.+..+... +|.|++.-.+.++..|.++.
T Consensus 236 ~~t~~~l~~i~~~~g~------~~~~~~~i~~~~~~~~~~~~~~~~~l~g~~~~i~~~~~~~~~~~~~l~e~G 302 (399)
T cd00316 236 EATDAFLRKLAELFGI------EKEVPEVIARERARLLDALADYHEYLGGKKVAIFGDGDLLLALARFLLELG 302 (399)
T ss_pred HHHHHHHHHHHHHhCC------CcchHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCcHHHHHHHHHHHCC
Confidence 3444445555555542 34567788888899999999998888764 57777777777888887753
No 53
>cd04250 AAK_NAGK-C AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic (NAGK-C) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in some bacteria and photosynthetic organisms using the non-acetylated, cyclic route of ornithine biosynthesis. In this pathway, glutamate is first N-acetylated and then phosphorylated by NAGK to give phosphoryl NAG, which is converted to NAG-ornithine. There are two variants of this pathway. In one, typified by the pathway in Thermotoga maritima and Pseudomonas aeruginosa, the acetyl group is recycled by reversible transacetylation from acetylornithine to glutamate. The phosphorylation of NAG by NAGK is feedback inhibited by arginine. In photosynthetic organisms, NAGK is the target of the nitrogen-signaling protein PII. Hexameric formation of NAGK domains appears to be essential to both arginine inhibition and NAGK-PII complex formation. NAGK-C are members of the Amino A
Probab=31.10 E-value=1.3e+02 Score=27.42 Aligned_cols=49 Identities=16% Similarity=0.392 Sum_probs=27.3
Q ss_pred HHhhcCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC--ccccCcHHH
Q 024036 112 LQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEG--IIPGGGVAL 162 (273)
Q Consensus 112 l~~l~g~~atI~vgG~te~~l~E~er~l~DAl~a~r~al~~g--vVpGGGaae 162 (273)
+.+|.++...|++||+.=.. .+..+++.+-+...+ ..... +|.|||..-
T Consensus 9 i~~~~~~~~ViKlGGs~i~~-~~~~~~~~~~i~~l~-~~g~~~ViVhG~g~~~ 59 (279)
T cd04250 9 IQKFRGKTVVIKYGGNAMKD-EELKESFARDIVLLK-YVGINPVVVHGGGPEI 59 (279)
T ss_pred HHHHcCCEEEEEEChHHhcC-ccHHHHHHHHHHHHH-HCCCCEEEEcCCcHHH
Confidence 45677889999999966211 122334444443222 22223 688998843
No 54
>PLN02825 amino-acid N-acetyltransferase
Probab=30.27 E-value=2.6e+02 Score=28.22 Aligned_cols=49 Identities=16% Similarity=0.240 Sum_probs=27.6
Q ss_pred HHhhcCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC----ccccCcHHHHHH
Q 024036 112 LQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEG----IIPGGGVALLHA 165 (273)
Q Consensus 112 l~~l~g~~atI~vgG~te~~l~E~er~l~DAl~a~r~al~~g----vVpGGGaael~~ 165 (273)
+.++.|+...|+++|..- .++ .+.+-+..+.....-| +|.|||---=+.
T Consensus 12 I~~~rgktfVIk~gG~~l--~~~---~~~~l~~DialL~~lGi~~VlVHGggpqI~~~ 64 (515)
T PLN02825 12 IQGHRGSTFVVVISGEVV--AGP---HLDNILQDISLLHGLGIKFVLVPGTHVQIDKL 64 (515)
T ss_pred HHHHCCCEEEEEECchhh--cCc---hHHHHHHHHHHHHHCCCCEEEEcCCCHHHHHH
Confidence 557789999999999542 122 2333333333222223 588998744333
No 55
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=28.79 E-value=21 Score=36.00 Aligned_cols=55 Identities=33% Similarity=0.276 Sum_probs=44.1
Q ss_pred hhhhhhhhhhhHHHHHHHHhCCeEecccCCCCCCCCCceecceEEEccCcEEEEcCC
Q 024036 23 CELVYEENCKAIMRDIAILTGGRVVTAASNSLYIPLMLGSCKKVKVTNNEMIIHGGS 79 (273)
Q Consensus 23 ~~~~~~~~~k~~ledia~~tG~~iv~~~~~~~~~~~~LG~a~~v~~~~~~~~~i~g~ 79 (273)
|..-|-|.++.+|+|++++|+.++.++..+ .....+|.|+.+...++.+....|.
T Consensus 277 ~~~gi~D~~~~~L~d~~Ilt~~~v~~~dl~--~~l~~~~ga~~v~~~~d~t~~~~G~ 331 (524)
T COG0459 277 KAPGIDDLAKAYLEDIAILTGRRVKKEDLG--ERLAKLGGAKIVSVLKDLTTIVLGE 331 (524)
T ss_pred ECCCCcHHHHHHHHhhcceecceecchhhH--HHHHHccCceEEeecccCceeecCc
Confidence 344477999999999999999999987531 3567899999999988887777764
No 56
>CHL00202 argB acetylglutamate kinase; Provisional
Probab=27.46 E-value=1.6e+02 Score=26.90 Aligned_cols=55 Identities=16% Similarity=0.277 Sum_probs=31.7
Q ss_pred HHHhhcCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHH-cC-ccccCcHHHHHHHH
Q 024036 111 RLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAME-EG-IIPGGGVALLHASE 167 (273)
Q Consensus 111 Rl~~l~g~~atI~vgG~te~~l~E~er~l~DAl~a~r~al~-~g-vVpGGGaael~~s~ 167 (273)
.+.+|+++...|++||+. ..-++...++-+-+..... +. .- +|.|||..-=....
T Consensus 17 yi~~~~~~~~VIk~gG~~-~~~~~l~~~~~~di~~l~~-~g~~~VlVHGgg~~i~~~~~ 73 (284)
T CHL00202 17 YIQKFRGRIMVIKYGGAA-MKNLILKADIIKDILFLSC-IGLKIVVVHGGGPEINFWLK 73 (284)
T ss_pred HHHHHcCCeEEEEEChHH-hcCcchHHHHHHHHHHHHH-CCCcEEEEeCCcHHHHHHHH
Confidence 456788999999999955 1111223344444444433 21 23 69999985434333
No 57
>PRK14736 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=27.32 E-value=2.2e+02 Score=23.17 Aligned_cols=53 Identities=6% Similarity=0.038 Sum_probs=30.7
Q ss_pred ceEEEccCcEEEEcCC------CChhhHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhc
Q 024036 64 KKVKVTNNEMIIHGGS------GNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLS 116 (273)
Q Consensus 64 ~~v~~~~~~~~~i~g~------~~~~~i~~ri~~l~~~i~~~~s~~e~~~L~eRl~~l~ 116 (273)
+.+++++++.+++-.. =|....++..+..++++..+.++..+..++.++.+++
T Consensus 67 Gf~eV~~n~v~Ila~~ae~~eeID~~~a~~a~~~Ae~~~~~~~~~~~~~~~~~~~~~~~ 125 (133)
T PRK14736 67 GFAEIGPTSVTVLAERAAPVEELTPEMIDREIEAVEMERDATQDLDKREALNAQIVQMQ 125 (133)
T ss_pred eEEEEECCEEEEEeeeeEEhhhCCHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHH
Confidence 3345556655544331 1445555666666666666666677777776666665
No 58
>PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species. Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B.
Probab=26.79 E-value=28 Score=33.39 Aligned_cols=53 Identities=15% Similarity=0.139 Sum_probs=31.0
Q ss_pred HHhhcCceEEEEecC-----------CCHHHHHHHHHHHHHHHHHHHHHHHcC--ccccCcHHHHH
Q 024036 112 LQMLSSRVAILKVGG-----------ATTAESRKKRKRATNALNAAKAAMEEG--IIPGGGVALLH 164 (273)
Q Consensus 112 l~~l~g~~atI~vgG-----------~te~~l~E~er~l~DAl~a~r~al~~g--vVpGGGaael~ 164 (273)
+++-.+..++++|-| ...+.-.|.++.|..--.++=||+-+| +|.|-|++.+-
T Consensus 14 yW~~~~~~~avvi~gw~rMSY~~~~~~~~f~s~eL~~~Ir~LH~~VGNAvt~gr~IV~GtGsTQL~ 79 (363)
T PF04864_consen 14 YWRRHGDSSAVVIPGWHRMSYFSDSSNGWFISPELERQIRRLHRVVGNAVTDGRYIVFGTGSTQLF 79 (363)
T ss_dssp HHCCTHHHH-EEE-TTTT-SSSS-TTSSTTS-HHHHHHHHHHHHHH-SB--TTSEEEEECHHHHHH
T ss_pred HHHhcCcceeEEEeccccceeEEecCCceeccHHHHHHHHHHHHHhccccccCcEEEEcCCHHHHH
Confidence 334444456666654 224455677777777677788888776 89999998653
No 59
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=25.21 E-value=1.4e+02 Score=23.39 Aligned_cols=36 Identities=17% Similarity=0.200 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhcCce
Q 024036 84 YIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRV 119 (273)
Q Consensus 84 ~i~~ri~~l~~~i~~~~s~~e~~~L~eRl~~l~g~~ 119 (273)
..+.|++.++.++++-++..+-..|+-+++.++|.+
T Consensus 46 ~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~ 81 (106)
T PF10805_consen 46 EHDRRLQALETKLEHLPTRDDVHDLQLELAELRGEL 81 (106)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHH
Confidence 348899999999999999999999999999888754
No 60
>cd04240 AAK_UC AAK_UC: Uncharacterized (UC) amino acid kinase-like proteins found mainly in archaea and a few bacteria. Sequences in this CD are members of the Amino Acid Kinase (AAK) superfamily.
Probab=22.13 E-value=1e+02 Score=26.79 Aligned_cols=15 Identities=40% Similarity=0.643 Sum_probs=10.7
Q ss_pred CccccCcHH---HHHHHH
Q 024036 153 GIIPGGGVA---LLHASE 167 (273)
Q Consensus 153 gvVpGGGaa---el~~s~ 167 (273)
.+|||||.. ...+..
T Consensus 28 ~iV~GGG~~A~~~r~~~~ 45 (203)
T cd04240 28 VIVPGGGPFADVVRRYQE 45 (203)
T ss_pred EEEcCCcHHHHHHHHHHH
Confidence 389999997 555443
No 61
>cd04255 AAK_UMPK-MosAB AAK_UMPK-MosAB: This CD includes the alpha and beta subunits of the Mo storage protein (MosA and MosB) which are related to uridine monophosphate kinase (UMPK) enzymes that catalyze the phosphorylation of UMP by ATP, yielding UDP, and playing a key role in pyrimidine nucleotide biosynthesis. The Mo storage protein from the nitrogen-fixing bacterium, Azotobacter vinelandii, is characterized as an alpha4-beta4 octamer containing a polynuclear molybdenum-oxide cluster which is ATP-dependent to bind Mo and pH-dependent to release Mo. These and related bacterial sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=21.01 E-value=5.4e+02 Score=23.31 Aligned_cols=47 Identities=21% Similarity=0.334 Sum_probs=26.8
Q ss_pred hcCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHc---CccccCcHHHH
Q 024036 115 LSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEE---GIIPGGGVALL 163 (273)
Q Consensus 115 l~g~~atI~vgG~te~~l~E~er~l~DAl~a~r~al~~---gvVpGGGaael 163 (273)
+-+++..|+|||+-=. ++....++.-...++..... -+|-|||++-.
T Consensus 28 ~~~~~~ViKiGGSvit--dk~~~~i~~la~~i~~~~~~~~vilV~GGG~~~r 77 (262)
T cd04255 28 LLPDLNVVKIGGQSII--DRGAEAVLPLVEEIVALRPEHKLLILTGGGTRAR 77 (262)
T ss_pred cCCCcEEEEeccceec--CCcHHHHHHHHHHHHHHhCCCcEEEEECCHHHHH
Confidence 3457788999996421 12123444444444443332 27999999773
No 62
>KOG3633 consensus BAG family molecular chaperone regulator 2 [Posttranslational modification, protein turnover, chaperones]
Probab=21.00 E-value=3.9e+02 Score=23.42 Aligned_cols=70 Identities=24% Similarity=0.182 Sum_probs=47.4
Q ss_pred hhHHHHHHHHHHHHhh----------------------ccCHHHHHHHHHHHHhhcCceEEEEecCCCHHHHHHHHHHHH
Q 024036 83 VYIEDRCEQLSDAIEM----------------------STSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRAT 140 (273)
Q Consensus 83 ~~i~~ri~~l~~~i~~----------------------~~s~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~l~ 140 (273)
..++-||+.||+.... .-++-|||.+.-.+.||++..+|+-|+=.|--- ++-++++.
T Consensus 52 D~lelrVE~LRk~A~~le~eKe~lL~s~~~I~~~~~M~~~se~eREEi~l~~~Rl~~Rt~TVev~VeT~Rn-~~Q~~sL~ 130 (219)
T KOG3633|consen 52 DSLELRVEKLRKDALNLEEEKEYLLMSMDLIKSNEMMQNMSEAEREEIILYLQRLSSRTATVEVRVETVRN-NSQEDSLS 130 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHhcccceEEEEEeccCC-hHHHHHHH
Confidence 5678888888865311 115558888888999999998898887554322 34566777
Q ss_pred HHHHHHHHHHHcC
Q 024036 141 NALNAAKAAMEEG 153 (273)
Q Consensus 141 DAl~a~r~al~~g 153 (273)
+|--.+-..++-|
T Consensus 131 ~at~lIDev~~m~ 143 (219)
T KOG3633|consen 131 QATVLIDEVIKMG 143 (219)
T ss_pred HHHHHHHHHHHhc
Confidence 7766665555544
No 63
>PF14252 DUF4347: Domain of unknown function (DUF4347)
Probab=20.06 E-value=99 Score=26.29 Aligned_cols=28 Identities=25% Similarity=0.495 Sum_probs=25.9
Q ss_pred hhhhhhhhhhhHHHHHHHHhCCeEeccc
Q 024036 23 CELVYEENCKAIMRDIAILTGGRVVTAA 50 (273)
Q Consensus 23 ~~~~~~~~~k~~ledia~~tG~~iv~~~ 50 (273)
|+++--+...+.+++|+.+||+.|-.+.
T Consensus 99 C~vaag~~G~~fv~~L~~ltga~VAAS~ 126 (165)
T PF14252_consen 99 CNVAAGEEGQEFVQRLAQLTGADVAAST 126 (165)
T ss_pred CccCcchhHHHHHHHHHHHHCCCEEecC
Confidence 8899889999999999999999998875
Done!