Query 024038
Match_columns 273
No_of_seqs 194 out of 428
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 17:08:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024038.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024038hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rls_A YAF9, protein AF-9 homo 100.0 6.2E-56 2.1E-60 385.3 17.3 151 44-194 1-168 (175)
2 3qrl_A Transcription initiatio 100.0 4.8E-37 1.7E-41 258.4 14.0 127 47-189 8-139 (140)
3 2l5g_B Putative uncharacterize 83.1 2.1 7.2E-05 29.0 4.7 32 233-264 8-39 (42)
4 2l5g_B Putative uncharacterize 66.1 8.5 0.00029 26.0 4.1 30 239-268 7-36 (42)
5 1gmj_A ATPase inhibitor; coile 59.2 15 0.00051 28.2 4.9 36 233-268 36-71 (84)
6 3trt_A Vimentin; cytoskeleton, 57.6 13 0.00044 26.9 4.2 44 225-268 31-76 (77)
7 1fxk_A Prefoldin; archaeal pro 55.3 15 0.00052 27.6 4.5 45 224-268 55-99 (107)
8 2zqm_A Prefoldin beta subunit 54.6 16 0.00053 27.9 4.5 44 224-267 60-103 (117)
9 2wuj_A Septum site-determining 53.9 13 0.00045 26.0 3.6 31 233-263 26-56 (57)
10 3efg_A Protein SLYX homolog; x 53.5 21 0.00073 26.6 4.9 38 233-270 27-64 (78)
11 2fxo_A Myosin heavy chain, car 48.6 25 0.00087 28.0 5.0 34 232-265 95-128 (129)
12 1nkp_B MAX protein, MYC proto- 47.3 33 0.0011 25.1 5.1 37 233-269 46-82 (83)
13 2yy0_A C-MYC-binding protein; 44.5 47 0.0016 23.0 5.2 33 234-266 19-51 (53)
14 2v4h_A NF-kappa-B essential mo 43.4 24 0.00084 28.3 4.0 29 240-268 82-110 (110)
15 1gd2_E Transcription factor PA 40.7 35 0.0012 25.0 4.3 34 235-268 37-70 (70)
16 3mq7_A Bone marrow stromal ant 40.7 35 0.0012 27.7 4.6 26 243-268 73-98 (121)
17 3rcz_B SUMO-conjugating enzyme 38.5 70 0.0024 26.3 6.4 35 69-103 42-76 (163)
18 3m91_A Proteasome-associated A 37.9 68 0.0023 22.2 5.2 35 233-267 15-49 (51)
19 2gjd_A Ubiquitin-conjugating e 37.8 74 0.0025 25.8 6.3 35 69-103 36-70 (157)
20 4dzn_A Coiled-coil peptide CC- 36.7 37 0.0013 21.3 3.2 23 246-268 7-29 (33)
21 1go4_E MAD1 (mitotic arrest de 35.9 30 0.001 27.3 3.4 37 226-262 60-96 (100)
22 1nlw_A MAD protein, MAX dimeri 35.6 54 0.0018 24.3 4.7 35 233-267 46-80 (80)
23 1ci6_A Transcription factor AT 35.4 66 0.0023 22.7 4.9 36 233-268 22-57 (63)
24 3m9b_A Proteasome-associated A 34.9 31 0.0011 31.2 3.8 39 233-271 60-98 (251)
25 1hwt_C Protein (heme activator 34.8 22 0.00077 25.2 2.4 24 247-270 57-80 (81)
26 2yy0_A C-MYC-binding protein; 34.8 27 0.00093 24.2 2.7 27 233-259 25-51 (53)
27 2lw1_A ABC transporter ATP-bin 34.6 49 0.0017 24.6 4.4 31 229-259 17-47 (89)
28 1nkp_A C-MYC, MYC proto-oncoge 34.2 64 0.0022 24.2 5.0 37 233-269 51-87 (88)
29 2grr_A Ubiquitin-conjugating e 32.5 1E+02 0.0035 25.1 6.4 36 68-103 38-73 (161)
30 3nmd_A CGMP dependent protein 32.2 66 0.0023 23.9 4.6 21 247-267 39-59 (72)
31 3m91_A Proteasome-associated A 30.7 65 0.0022 22.3 4.1 25 236-260 25-49 (51)
32 4gpr_A Ubiquitin-conjugating e 29.9 60 0.0021 26.2 4.5 34 69-102 31-64 (151)
33 1go4_E MAD1 (mitotic arrest de 28.1 1.4E+02 0.0047 23.4 6.0 34 234-267 12-45 (100)
34 1i7k_A Ubiquitin-conjugating e 28.0 68 0.0023 27.0 4.6 35 69-103 57-91 (179)
35 3hnw_A Uncharacterized protein 27.6 84 0.0029 25.6 5.0 11 251-261 113-123 (138)
36 1wt6_A Myotonin-protein kinase 27.4 1E+02 0.0034 23.4 4.9 31 233-263 30-60 (81)
37 1am9_A Srebp-1A, protein (ster 27.4 1.2E+02 0.004 22.3 5.3 41 232-272 41-81 (82)
38 3h8k_A Ubiquitin-conjugating e 27.2 1.1E+02 0.0038 24.8 5.7 35 69-103 31-65 (164)
39 2aze_B Transcription factor E2 26.5 90 0.0031 24.3 4.8 31 233-263 12-42 (106)
40 2onu_A Ubiquitin-conjugating e 26.5 1.3E+02 0.0043 24.3 5.9 35 69-103 26-60 (152)
41 2wt7_A Proto-oncogene protein 26.3 1.3E+02 0.0046 20.9 5.3 32 233-264 29-60 (63)
42 2aak_A UBC1, ubiquitin conjuga 25.6 1.4E+02 0.0047 24.0 5.9 35 69-103 31-65 (152)
43 1t2k_D Cyclic-AMP-dependent tr 25.4 1.4E+02 0.0048 20.5 5.2 31 233-263 28-58 (61)
44 1zdn_A Ubiquitin-conjugating e 24.8 1.3E+02 0.0044 24.4 5.7 35 69-103 40-74 (158)
45 3nmd_A CGMP dependent protein 24.3 1.6E+02 0.0054 21.8 5.4 37 233-269 32-68 (72)
46 2q2f_A Selenoprotein S; anti-p 24.3 80 0.0027 24.3 3.9 36 233-268 43-78 (89)
47 3iv1_A Tumor susceptibility ge 23.9 1.3E+02 0.0044 22.6 4.9 30 238-267 36-65 (78)
48 3iv1_A Tumor susceptibility ge 23.3 1E+02 0.0034 23.2 4.3 32 234-265 46-77 (78)
49 2zqm_A Prefoldin beta subunit 23.2 1.3E+02 0.0046 22.5 5.2 33 234-266 77-109 (117)
50 1fxk_C Protein (prefoldin); ar 23.2 1E+02 0.0036 24.0 4.6 33 235-267 96-128 (133)
51 3rz3_A Ubiquitin-conjugating e 22.7 1.4E+02 0.0049 24.8 5.7 36 68-103 34-69 (183)
52 1zym_A Enzyme I; phosphotransf 22.7 91 0.0031 27.6 4.6 28 232-259 36-63 (258)
53 3ra3_B P2F; coiled coil domain 22.6 89 0.003 18.9 3.1 25 237-261 3-27 (28)
54 2h2y_A Ubiquitin-conjugating e 22.5 1.6E+02 0.0056 23.2 5.8 35 69-103 47-81 (136)
55 2fo3_A Ubiquitin-conjugating e 22.5 1.7E+02 0.0058 22.7 5.8 34 69-102 33-66 (125)
56 2cly_B ATP synthase D chain, m 22.3 87 0.003 26.1 4.2 32 232-263 93-124 (160)
57 1jat_A Ubiquitin-conjugating e 22.2 1.7E+02 0.0059 23.5 5.9 35 69-103 32-66 (155)
58 1l8d_A DNA double-strand break 22.2 1.2E+02 0.0041 22.8 4.7 28 237-264 67-94 (112)
59 2wg5_A General control protein 22.1 74 0.0025 24.7 3.5 28 236-263 9-36 (109)
60 1jnm_A Proto-oncogene C-JUN; B 21.8 2E+02 0.0067 19.9 5.4 30 239-268 27-56 (62)
61 2a7l_A Hypothetical ubiquitin- 21.8 2.4E+02 0.0083 22.4 6.7 35 68-102 50-84 (136)
62 2akf_A Coronin-1A; coiled coil 21.7 1.6E+02 0.0053 18.5 4.4 23 234-256 6-28 (32)
63 1a93_B MAX protein, coiled coi 21.3 1.1E+02 0.0039 19.6 3.6 22 246-267 12-33 (34)
64 1fxk_A Prefoldin; archaeal pro 21.0 1.7E+02 0.0059 21.5 5.3 34 233-266 71-104 (107)
65 1joc_A EEA1, early endosomal a 20.7 1.2E+02 0.004 24.0 4.5 26 236-261 6-31 (125)
66 2wt7_A Proto-oncogene protein 20.5 1.8E+02 0.0061 20.2 4.9 35 234-268 23-57 (63)
67 1hjb_A Ccaat/enhancer binding 20.3 1.8E+02 0.0061 22.0 5.2 34 233-266 42-75 (87)
68 3l4q_C Phosphatidylinositol 3- 20.1 99 0.0034 26.3 4.1 38 233-270 102-139 (170)
69 3lay_A Zinc resistance-associa 20.1 1.6E+02 0.0056 24.8 5.5 35 235-269 72-106 (175)
No 1
>3rls_A YAF9, protein AF-9 homolog; yeats domain, histone, transcription; 1.70A {Saccharomyces cerevisiae} PDB: 3fk3_A
Probab=100.00 E-value=6.2e-56 Score=385.31 Aligned_cols=151 Identities=43% Similarity=0.833 Sum_probs=135.4
Q ss_pred eeceEEEEEEEEccceEEcCC----CCCCCCeeeEEEEEeCCCCCCcccceeeeEEEeCCCCCCCcceeecCCcEEEeee
Q 024038 44 LKDVEISIPIVYGNVAFWLGK----KASEYQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFNNPTRAVESPPFELSESG 119 (273)
Q Consensus 44 ~k~~~I~~pIv~Gn~A~~l~k----k~~~~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~nP~Rvv~~PPFeVtE~G 119 (273)
|||++|+|||||||+|+++++ +++++|||+|+|||||++++|+++||+||+|+|||||+||+|+|++|||+|+|+|
T Consensus 1 vk~v~i~kpIv~Gn~a~~l~~~~~~~~~~~~TH~WtVyVr~~~~edis~~v~KV~F~LHpSF~np~Rvv~~PPFevtE~G 80 (175)
T 3rls_A 1 IKTLSVSRPIIYGNTAKKMGSVKPPNAPAEHTHLWTIFVRGPQNEDISYFIKKVVFKLHDTYPNPVRSIEAPPFELTETG 80 (175)
T ss_dssp CCCCCEEEEEEEEEEEEECCSCCCTTCCTTCCEEEEEEEECGGGCCCTTTEEEEEEECCTTSSSCEEEECSSSEEEEEEE
T ss_pred CCceEEEeCEEEcceeEECCccccCCCCCCCcEEEEEEEECCCCCChhheEEEEEEEcCCCCCCCcEEEeCCCCEEEEeE
Confidence 689999999999999999996 3567899999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEEEEEeecCCCCCEEEEEEeecCCCCCCC-------C------CcCCCCeEEEeeeEEEeeCCCHHHHHHHhc
Q 024038 120 WGEFEIAITLYFHADVCDKPLNLYHHLKLYPEDESG-------S------MSTKKPVVVESYDEIVFPEPSDSFLARVQN 186 (273)
Q Consensus 120 WGEFeI~IkI~F~~~~~ekp~~l~H~L~L~~~~~~~-------~------~~~~~~V~~e~ydEIvF~nPse~f~~~L~~ 186 (273)
||||+|.|+|||++++++|+++|+|+|+||+++.+. . ..+++||++|+||||||+||+|.||++|++
T Consensus 81 WGeF~i~I~i~F~~~~~ek~i~i~H~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~se~ydEivF~ePte~f~~~L~~ 160 (175)
T 3rls_A 81 WGEFDINIKVYFVEEANEKVLNFYHRLRLHPYANPVPNSDNGNEQNTTDHNSKDAEVSSVYFDEIVFNEPNEEFFKILMS 160 (175)
T ss_dssp SSCCEEEEEEEECGGGCCCCEEEEEECCCCC-----------------------CCEEEEEEEEEEESSCCHHHHHHHHH
T ss_pred EeeEEEEEEEEEeCCCCCccEEEEEEEEecCCCCccccccccccccccccccCCCceEEEEeccEEEeCCCHHHHHHHHh
Confidence 999999999999988899999999999999986441 1 124789999999999999999999999999
Q ss_pred CCCccCCC
Q 024038 187 HPAVTLPR 194 (273)
Q Consensus 187 ~~~~~~p~ 194 (273)
+|++++|.
T Consensus 161 ~p~~~lp~ 168 (175)
T 3rls_A 161 RPGNLLPS 168 (175)
T ss_dssp STTCCSCS
T ss_pred CCCccCCC
Confidence 99988763
No 2
>3qrl_A Transcription initiation factor TFIID subunit 14; yeats domain, IG fold, nucleus, nuclear protein; HET: PGE; 1.70A {Saccharomyces cerevisiae} PDB: 2l7e_A
Probab=100.00 E-value=4.8e-37 Score=258.45 Aligned_cols=127 Identities=20% Similarity=0.486 Sum_probs=108.4
Q ss_pred eEEEEEEEEccceEEcCCCC--CCCCeeeEE--EEEeCCCCCCcc-cceeeeEEEeCCCCCCCcceeecCCcEEEeeeEE
Q 024038 47 VEISIPIVYGNVAFWLGKKA--SEYQSHKWT--VYVRGATNEDLG-VVIKRAVFQLHSSFNNPTRAVESPPFELSESGWG 121 (273)
Q Consensus 47 ~~I~~pIv~Gn~A~~l~kk~--~~~~tH~Wt--VyVr~~~~edls-~~IkKV~F~LHpSF~nP~Rvv~~PPFeVtE~GWG 121 (273)
|...+.|+-+.. .+++.. .+.++|+|+ |||||.+++|++ +||+||+|+|||||+||+|+|++|||+|+|+|||
T Consensus 8 vkrtvr~~T~Q~--~~~~~~~~eg~~~h~WtieV~vr~~~g~ei~~~~i~kV~f~LH~sF~np~r~v~~pPF~v~e~GWG 85 (140)
T 3qrl_A 8 VKRTIRIKTQQH--ILPEVPPVENFPVRQWSIEIVLLDDEGKEIPATIFDKVIYHLHPTFANPNRTFTDPPFRIEEQGWG 85 (140)
T ss_dssp EEEEEEEEEEEE--ECTTSCCBTTBCCEEEEEEEEEECTTSCEECCTTEEEEEEECCTTSSSCEEEECSTTCCEEEEESS
T ss_pred eEEEEEEEEeee--eCCCCCCCCCCcccEeeEEEEEeCCCCCcCchheEEEEEEEeCCCCCCCeEEEcCCCcEEEEEEee
Confidence 444455555554 565543 345779999 899999999885 8999999999999999999999999999999999
Q ss_pred EEEEEEEEEEeecCCCCCEEEEEEeecCCCCCCCCCcCCCCeEEEeeeEEEeeCCCHHHHHHHhcCCC
Q 024038 122 EFEIAITLYFHADVCDKPLNLYHHLKLYPEDESGSMSTKKPVVVESYDEIVFPEPSDSFLARVQNHPA 189 (273)
Q Consensus 122 EFeI~IkI~F~~~~~ekp~~l~H~L~L~~~~~~~~~~~~~~V~~e~ydEIvF~nPse~f~~~L~~~~~ 189 (273)
||+|.|+|||++++ ++++|.|+|+|+++. ++.+++|+|+||+++|+++|+.+|+
T Consensus 86 eF~i~I~i~f~~~~--~~~~i~H~L~f~~~~------------y~~~h~i~f~np~~~l~~~L~~~Gp 139 (140)
T 3qrl_A 86 GFPLDISVFLLEKA--GERKIPHDLNFLQES------------YEVEHVIQIPLNKPLLTEELAKSGS 139 (140)
T ss_dssp CCCEEEEEEEGGGT--EEEEEEECCCSSSSE------------EEEEEEEEEESCSHHHHHHHTTTSC
T ss_pred eEEEEEEEEEecCC--CcEEEEEEEEeCCCC------------CcceEEEEECCCCHHHHHHHHHhCC
Confidence 99999999999764 578999999999643 6678899999999999999999864
No 3
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=83.09 E-value=2.1 Score=28.99 Aligned_cols=32 Identities=16% Similarity=0.288 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024038 233 ADELLQLAAARQQVQAHIAKLKRQISLIDGQQ 264 (273)
Q Consensus 233 ~~El~~l~~a~~kV~~~i~~lk~~l~~~e~~~ 264 (273)
-.-++|++.-..++.+.|.+|+.+++.+|...
T Consensus 8 ~qkI~kVdrEI~Kte~kI~~lqkKlkeLee~a 39 (42)
T 2l5g_B 8 IQNMDRVDREITMVEQQISKLKKKQQQLEEEA 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34578888888999999999999999888754
No 4
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=66.11 E-value=8.5 Score=26.02 Aligned_cols=30 Identities=33% Similarity=0.426 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 024038 239 LAAARQQVQAHIAKLKRQISLIDGQQQQLR 268 (273)
Q Consensus 239 l~~a~~kV~~~i~~lk~~l~~~e~~~~~~k 268 (273)
|.....+|+.||++.++++.++.+.+.+|.
T Consensus 7 l~qkI~kVdrEI~Kte~kI~~lqkKlkeLe 36 (42)
T 2l5g_B 7 LIQNMDRVDREITMVEQQISKLKKKQQQLE 36 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555678999999999999999998887764
No 5
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=59.20 E-value=15 Score=28.18 Aligned_cols=36 Identities=19% Similarity=0.272 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 024038 233 ADELLQLAAARQQVQAHIAKLKRQISLIDGQQQQLR 268 (273)
Q Consensus 233 ~~El~~l~~a~~kV~~~i~~lk~~l~~~e~~~~~~k 268 (273)
+.|.++|.+-++++..+|...+++|+.+|.++...|
T Consensus 36 qkekEqL~~LKkkl~~el~~h~~ei~~le~~i~rhk 71 (84)
T 1gmj_A 36 ARAKEQLAALKKHKENEISHHAKEIERLQKEIERHK 71 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777888888888888888888887775543
No 6
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=57.55 E-value=13 Score=26.91 Aligned_cols=44 Identities=14% Similarity=0.277 Sum_probs=29.9
Q ss_pred hhccCccH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 024038 225 QWFMNFSE--ADELLQLAAARQQVQAHIAKLKRQISLIDGQQQQLR 268 (273)
Q Consensus 225 ~~f~~~~E--~~El~~l~~a~~kV~~~i~~lk~~l~~~e~~~~~~k 268 (273)
.||....+ +....+=..+-...+.||.+|+.++..|+.+++.+|
T Consensus 31 ~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 31 EWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45544333 333334444555678899999999999999998876
No 7
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=55.27 E-value=15 Score=27.56 Aligned_cols=45 Identities=11% Similarity=0.164 Sum_probs=34.3
Q ss_pred chhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 024038 224 AQWFMNFSEADELLQLAAARQQVQAHIAKLKRQISLIDGQQQQLR 268 (273)
Q Consensus 224 ~~~f~~~~E~~El~~l~~a~~kV~~~i~~lk~~l~~~e~~~~~~k 268 (273)
|..|-..+-.+-...|......+..+|+.+.+++..++.+++.++
T Consensus 55 G~vfv~~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk 99 (107)
T 1fxk_A 55 GNILIRVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQ 99 (107)
T ss_dssp TTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667776777788888888888888888888888887776665
No 8
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=54.65 E-value=16 Score=27.91 Aligned_cols=44 Identities=11% Similarity=0.261 Sum_probs=26.4
Q ss_pred chhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 024038 224 AQWFMNFSEADELLQLAAARQQVQAHIAKLKRQISLIDGQQQQL 267 (273)
Q Consensus 224 ~~~f~~~~E~~El~~l~~a~~kV~~~i~~lk~~l~~~e~~~~~~ 267 (273)
+..|-..+-.+-+..|......+...|+.|.+++..++.+++.+
T Consensus 60 G~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~l 103 (117)
T 2zqm_A 60 GTLIVKTTKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKEL 103 (117)
T ss_dssp TTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466666555566666666666666666666666666555444
No 9
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=53.92 E-value=13 Score=25.98 Aligned_cols=31 Identities=16% Similarity=0.212 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024038 233 ADELLQLAAARQQVQAHIAKLKRQISLIDGQ 263 (273)
Q Consensus 233 ~~El~~l~~a~~kV~~~i~~lk~~l~~~e~~ 263 (273)
.+-|+++......+.++++.|++++..++.+
T Consensus 26 D~FLd~v~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 26 NEFLAQVRKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3457888888888888888888888887764
No 10
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=53.52 E-value=21 Score=26.57 Aligned_cols=38 Identities=21% Similarity=0.163 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCC
Q 024038 233 ADELLQLAAARQQVQAHIAKLKRQISLIDGQQQQLRST 270 (273)
Q Consensus 233 ~~El~~l~~a~~kV~~~i~~lk~~l~~~e~~~~~~k~~ 270 (273)
.+.++.|..+-.+=+.+|++|+.+++.+.++++.+.++
T Consensus 27 E~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~~ 64 (78)
T 3efg_A 27 EQALTELSEALADARLTGARNAELIRHLLEDLGKVRST 64 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 46788899998999999999999999999888776654
No 11
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=48.57 E-value=25 Score=28.03 Aligned_cols=34 Identities=21% Similarity=0.310 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024038 232 EADELLQLAAARQQVQAHIAKLKRQISLIDGQQQ 265 (273)
Q Consensus 232 E~~El~~l~~a~~kV~~~i~~lk~~l~~~e~~~~ 265 (273)
+.+....|.+++.++..++..|+++|..++..++
T Consensus 95 eee~~~~L~~~kkkle~e~~~Lk~~led~e~~l~ 128 (129)
T 2fxo_A 95 EEEMNAELTAKKRKLEDECSELKRDIDDLELTLA 128 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3566778888888899999999998888887765
No 12
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=47.27 E-value=33 Score=25.09 Aligned_cols=37 Identities=24% Similarity=0.319 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccC
Q 024038 233 ADELLQLAAARQQVQAHIAKLKRQISLIDGQQQQLRS 269 (273)
Q Consensus 233 ~~El~~l~~a~~kV~~~i~~lk~~l~~~e~~~~~~k~ 269 (273)
.+=|..|....+....+++.|+++...++.+++.|..
T Consensus 46 i~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~~ 82 (83)
T 1nkp_B 46 TEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALGG 82 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4446666666677778888888888888888877753
No 13
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=44.53 E-value=47 Score=22.96 Aligned_cols=33 Identities=9% Similarity=0.103 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024038 234 DELLQLAAARQQVQAHIAKLKRQISLIDGQQQQ 266 (273)
Q Consensus 234 ~El~~l~~a~~kV~~~i~~lk~~l~~~e~~~~~ 266 (273)
.+++.|..=....++.++.|++++.++..++.+
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 567777777777777777777777777776654
No 14
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=43.44 E-value=24 Score=28.26 Aligned_cols=29 Identities=17% Similarity=0.304 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 024038 240 AAARQQVQAHIAKLKRQISLIDGQQQQLR 268 (273)
Q Consensus 240 ~~a~~kV~~~i~~lk~~l~~~e~~~~~~k 268 (273)
-+||.+...+++.|..+|..+..++++|+
T Consensus 82 RadREkl~~eKe~L~~ql~~Lq~q~~~l~ 110 (110)
T 2v4h_A 82 RHAREKLVEKKEYLQEQLEQLQREFNKLK 110 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred hhhHHHHHhHHHHHHHHHHHHHHHHHhcC
Confidence 35778888888888888888888877765
No 15
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=40.75 E-value=35 Score=25.02 Aligned_cols=34 Identities=9% Similarity=0.280 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 024038 235 ELLQLAAARQQVQAHIAKLKRQISLIDGQQQQLR 268 (273)
Q Consensus 235 El~~l~~a~~kV~~~i~~lk~~l~~~e~~~~~~k 268 (273)
.+..|......+..+...|+.++..+..+++.+|
T Consensus 37 ~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~lr 70 (70)
T 1gd2_E 37 QVVTLKELHSSTTLENDQLRQKVRQLEEELRILK 70 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4556666667778888888888888888887765
No 16
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=40.73 E-value=35 Score=27.73 Aligned_cols=26 Identities=15% Similarity=0.369 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcc
Q 024038 243 RQQVQAHIAKLKRQISLIDGQQQQLR 268 (273)
Q Consensus 243 ~~kV~~~i~~lk~~l~~~e~~~~~~k 268 (273)
.++.+.||..|+.+|..++.+++.|+
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr 98 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLR 98 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667788888888888877776665
No 17
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1
Probab=38.46 E-value=70 Score=26.32 Aligned_cols=35 Identities=9% Similarity=0.223 Sum_probs=26.0
Q ss_pred CCeeeEEEEEeCCCCCCcccceeeeEEEeCCCCCC
Q 024038 69 YQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFNN 103 (273)
Q Consensus 69 ~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~n 103 (273)
.+...|.+-+.|+.+.....=+=++.+.+-+.|+.
T Consensus 42 ~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~ 76 (163)
T 3rcz_B 42 LDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPT 76 (163)
T ss_dssp EEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTT
T ss_pred CCccEEEEEEECCCCCCcCCCEEEEEEECCCCCCC
Confidence 38899999999987655444555677777888863
No 18
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=37.94 E-value=68 Score=22.19 Aligned_cols=35 Identities=14% Similarity=0.258 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 024038 233 ADELLQLAAARQQVQAHIAKLKRQISLIDGQQQQL 267 (273)
Q Consensus 233 ~~El~~l~~a~~kV~~~i~~lk~~l~~~e~~~~~~ 267 (273)
+.++..|.+=..++.+.+.+.|++|..+.+++.+|
T Consensus 15 ~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 15 EARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566776666666677777777777776666554
No 19
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B
Probab=37.77 E-value=74 Score=25.83 Aligned_cols=35 Identities=9% Similarity=0.225 Sum_probs=24.6
Q ss_pred CCeeeEEEEEeCCCCCCcccceeeeEEEeCCCCCC
Q 024038 69 YQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFNN 103 (273)
Q Consensus 69 ~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~n 103 (273)
.+...|.+.+.|+.+.....=+=++.+.+.+.|+.
T Consensus 36 ~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~ 70 (157)
T 2gjd_A 36 MDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPS 70 (157)
T ss_dssp EEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTT
T ss_pred CcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCC
Confidence 47899999999986644333344566777777763
No 20
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=36.70 E-value=37 Score=21.29 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcc
Q 024038 246 VQAHIAKLKRQISLIDGQQQQLR 268 (273)
Q Consensus 246 V~~~i~~lk~~l~~~e~~~~~~k 268 (273)
+.++|+.||+++..+.=++..||
T Consensus 7 lkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 7 LKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555444
No 21
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=35.90 E-value=30 Score=27.25 Aligned_cols=37 Identities=14% Similarity=0.135 Sum_probs=27.8
Q ss_pred hccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024038 226 WFMNFSEADELLQLAAARQQVQAHIAKLKRQISLIDG 262 (273)
Q Consensus 226 ~f~~~~E~~El~~l~~a~~kV~~~i~~lk~~l~~~e~ 262 (273)
+|+.-....-.++......++++|+++||.+++.+|.
T Consensus 60 H~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v~~lEe 96 (100)
T 1go4_E 60 HMSLNPTSVARQRLREDHSQLQAECERLRGLLRAMER 96 (100)
T ss_dssp EESSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred eecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3555555566667778888999999999999888775
No 22
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=35.56 E-value=54 Score=24.26 Aligned_cols=35 Identities=17% Similarity=0.272 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 024038 233 ADELLQLAAARQQVQAHIAKLKRQISLIDGQQQQL 267 (273)
Q Consensus 233 ~~El~~l~~a~~kV~~~i~~lk~~l~~~e~~~~~~ 267 (273)
.+=+..|.....+...+++.|+.+...+..++++|
T Consensus 46 ~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~l 80 (80)
T 1nlw_A 46 KLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLEKL 80 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 45577777777788888888888888888777654
No 23
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=35.42 E-value=66 Score=22.68 Aligned_cols=36 Identities=17% Similarity=0.190 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 024038 233 ADELLQLAAARQQVQAHIAKLKRQISLIDGQQQQLR 268 (273)
Q Consensus 233 ~~El~~l~~a~~kV~~~i~~lk~~l~~~e~~~~~~k 268 (273)
.++.+.|..--+.+..+...|+.++..++.+.+.||
T Consensus 22 k~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 22 RAEQEALTGECKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666777777777777777766654
No 24
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=34.95 E-value=31 Score=31.24 Aligned_cols=39 Identities=13% Similarity=0.229 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCC
Q 024038 233 ADELLQLAAARQQVQAHIAKLKRQISLIDGQQQQLRSTS 271 (273)
Q Consensus 233 ~~El~~l~~a~~kV~~~i~~lk~~l~~~e~~~~~~k~~~ 271 (273)
+.+++.|.+=..++.+++..++++|..+..++++|+.+.
T Consensus 60 ~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~sPP 98 (251)
T 3m9b_A 60 EARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQPP 98 (251)
T ss_dssp HHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 455666666666678888888888888888888887653
No 25
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=34.84 E-value=22 Score=25.17 Aligned_cols=24 Identities=13% Similarity=0.375 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhccCC
Q 024038 247 QAHIAKLKRQISLIDGQQQQLRST 270 (273)
Q Consensus 247 ~~~i~~lk~~l~~~e~~~~~~k~~ 270 (273)
..+|+.|.++|..||..++.|..+
T Consensus 57 ~~~~~~L~~ri~~LE~~l~~l~~~ 80 (81)
T 1hwt_C 57 DNELKKLRERVKSLEKTLSKVHSS 80 (81)
T ss_dssp HHHHHHHHHHHHHHHTTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC
Confidence 368899999999999999988765
No 26
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=34.77 E-value=27 Score=24.22 Aligned_cols=27 Identities=19% Similarity=0.219 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024038 233 ADELLQLAAARQQVQAHIAKLKRQISL 259 (273)
Q Consensus 233 ~~El~~l~~a~~kV~~~i~~lk~~l~~ 259 (273)
+.|+..|..-...+.+++++++.+|..
T Consensus 25 k~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 25 RLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 677788888888888888888888764
No 27
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=34.57 E-value=49 Score=24.64 Aligned_cols=31 Identities=23% Similarity=0.332 Sum_probs=26.2
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024038 229 NFSEADELLQLAAARQQVQAHIAKLKRQISL 259 (273)
Q Consensus 229 ~~~E~~El~~l~~a~~kV~~~i~~lk~~l~~ 259 (273)
.|-++.||+.|..-..++.++|+.|..+|..
T Consensus 17 SykeqrEle~le~~Ie~LE~~i~~le~~lad 47 (89)
T 2lw1_A 17 SYKLQRELEQLPQLLEDLEAKLEALQTQVAD 47 (89)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4678999999999999999998888887754
No 28
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=34.20 E-value=64 Score=24.18 Aligned_cols=37 Identities=16% Similarity=0.238 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccC
Q 024038 233 ADELLQLAAARQQVQAHIAKLKRQISLIDGQQQQLRS 269 (273)
Q Consensus 233 ~~El~~l~~a~~kV~~~i~~lk~~l~~~e~~~~~~k~ 269 (273)
.+=+..|..-.+....+++.|+.+-..|..++++|+.
T Consensus 51 ~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~~ 87 (88)
T 1nkp_A 51 TAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLGG 87 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4556777777777777888888888888888888874
No 29
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Probab=32.45 E-value=1e+02 Score=25.07 Aligned_cols=36 Identities=6% Similarity=0.163 Sum_probs=24.8
Q ss_pred CCCeeeEEEEEeCCCCCCcccceeeeEEEeCCCCCC
Q 024038 68 EYQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFNN 103 (273)
Q Consensus 68 ~~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~n 103 (273)
+++...|.+.+.|+.+.....=+=++.+.+.+.|+.
T Consensus 38 ~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~ 73 (161)
T 2grr_A 38 TMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPS 73 (161)
T ss_dssp CEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTS
T ss_pred CCCccEEEEEEECCCCCCccCCEEEEEEEcCcccCC
Confidence 457899999999986544333334666777777763
No 30
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=32.20 E-value=66 Score=23.88 Aligned_cols=21 Identities=29% Similarity=0.267 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhc
Q 024038 247 QAHIAKLKRQISLIDGQQQQL 267 (273)
Q Consensus 247 ~~~i~~lk~~l~~~e~~~~~~ 267 (273)
+..|+.|..+|..++.+++.|
T Consensus 39 d~~I~eLEk~L~ekd~eI~~L 59 (72)
T 3nmd_A 39 DALIDELELELDQKDELIQML 59 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555544
No 31
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=30.74 E-value=65 Score=22.29 Aligned_cols=25 Identities=8% Similarity=0.243 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024038 236 LLQLAAARQQVQAHIAKLKRQISLI 260 (273)
Q Consensus 236 l~~l~~a~~kV~~~i~~lk~~l~~~ 260 (273)
-.+|.++-+.-.++|.+|++++..+
T Consensus 25 N~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 25 NSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677777777778888888877764
No 32
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}
Probab=29.93 E-value=60 Score=26.16 Aligned_cols=34 Identities=9% Similarity=0.136 Sum_probs=24.9
Q ss_pred CCeeeEEEEEeCCCCCCcccceeeeEEEeCCCCC
Q 024038 69 YQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFN 102 (273)
Q Consensus 69 ~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~ 102 (273)
++.+.|.+-+.|+.+.....=+=++.+.+-+.|+
T Consensus 31 ~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP 64 (151)
T 4gpr_A 31 DDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYP 64 (151)
T ss_dssp SCTTEEEEEEECCSSSTTTTCEEEEEEECCTTTT
T ss_pred CCceEEEEEEeCCCCCCcCCCEEEEEEECCCCCC
Confidence 4688999999998765544445567777777776
No 33
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=28.10 E-value=1.4e+02 Score=23.39 Aligned_cols=34 Identities=12% Similarity=0.257 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 024038 234 DELLQLAAARQQVQAHIAKLKRQISLIDGQQQQL 267 (273)
Q Consensus 234 ~El~~l~~a~~kV~~~i~~lk~~l~~~e~~~~~~ 267 (273)
+++..|..-......+..+|+++...+|.++...
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~ 45 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLERR 45 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888888888999999999998888663
No 34
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1
Probab=28.04 E-value=68 Score=26.96 Aligned_cols=35 Identities=14% Similarity=0.218 Sum_probs=24.6
Q ss_pred CCeeeEEEEEeCCCCCCcccceeeeEEEeCCCCCC
Q 024038 69 YQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFNN 103 (273)
Q Consensus 69 ~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~n 103 (273)
+..+.|.+.+.|+.+.....=+=++.+.+.+.|+.
T Consensus 57 ~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~ 91 (179)
T 1i7k_A 57 DNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPY 91 (179)
T ss_dssp TEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTT
T ss_pred CcccccEEEEECCCCCCcCCCEEEEEEECCCcCCC
Confidence 47899999999987644433355666677777763
No 35
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=27.61 E-value=84 Score=25.56 Aligned_cols=11 Identities=27% Similarity=0.380 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q 024038 251 AKLKRQISLID 261 (273)
Q Consensus 251 ~~lk~~l~~~e 261 (273)
++|++++..++
T Consensus 113 ~~l~~~~~~l~ 123 (138)
T 3hnw_A 113 KELKSEINKYQ 123 (138)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 36
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=27.43 E-value=1e+02 Score=23.43 Aligned_cols=31 Identities=6% Similarity=0.186 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024038 233 ADELLQLAAARQQVQAHIAKLKRQISLIDGQ 263 (273)
Q Consensus 233 ~~El~~l~~a~~kV~~~i~~lk~~l~~~e~~ 263 (273)
++||.++..+....+.++.+...+...++.+
T Consensus 30 ~EELs~vr~~ni~~eskL~eae~rn~eL~~e 60 (81)
T 1wt6_A 30 SREMEAIRTDNQNFASQLREAEARNRDLEAH 60 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667666666655555444444444444333
No 37
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=27.35 E-value=1.2e+02 Score=22.28 Aligned_cols=41 Identities=17% Similarity=0.093 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCC
Q 024038 232 EADELLQLAAARQQVQAHIAKLKRQISLIDGQQQQLRSTSD 272 (273)
Q Consensus 232 E~~El~~l~~a~~kV~~~i~~lk~~l~~~e~~~~~~k~~~~ 272 (273)
-..-|..-....+.++.+++.|+.+...+...+++.+.-+|
T Consensus 41 Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~~~~~~~ 81 (82)
T 1am9_A 41 KSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHKSKSLKD 81 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 34667777777888888888899888888888887765554
No 38
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A
Probab=27.23 E-value=1.1e+02 Score=24.77 Aligned_cols=35 Identities=9% Similarity=0.218 Sum_probs=25.9
Q ss_pred CCeeeEEEEEeCCCCCCcccceeeeEEEeCCCCCC
Q 024038 69 YQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFNN 103 (273)
Q Consensus 69 ~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~n 103 (273)
++.+.|.+.|.|+.+.....=+=++.+.+-+.|+.
T Consensus 31 ~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~ 65 (164)
T 3h8k_A 31 ENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPL 65 (164)
T ss_dssp TCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTS
T ss_pred CCccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCC
Confidence 46789999999987655444455677778888863
No 39
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=26.53 E-value=90 Score=24.33 Aligned_cols=31 Identities=23% Similarity=0.330 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024038 233 ADELLQLAAARQQVQAHIAKLKRQISLIDGQ 263 (273)
Q Consensus 233 ~~El~~l~~a~~kV~~~i~~lk~~l~~~e~~ 263 (273)
+.|+..|.+..+.++++|..++++|+.+-..
T Consensus 12 k~El~~L~~~E~~LD~~i~~~~~~l~~lted 42 (106)
T 2aze_B 12 TQDLRQLQESEQQLDHLMNICTTQLRLLSED 42 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6899999999999999999999999987643
No 40
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}
Probab=26.50 E-value=1.3e+02 Score=24.35 Aligned_cols=35 Identities=11% Similarity=0.129 Sum_probs=24.1
Q ss_pred CCeeeEEEEEeCCCCCCcccceeeeEEEeCCCCCC
Q 024038 69 YQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFNN 103 (273)
Q Consensus 69 ~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~n 103 (273)
++.+.|.+.+.|+.+.....=+=++.+.+-+.|+.
T Consensus 26 ~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~ 60 (152)
T 2onu_A 26 GSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPF 60 (152)
T ss_dssp TEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTT
T ss_pred CccceEEEEEECCCCCcccceEEEEEEcCcccCCC
Confidence 57899999999987654433344566666677763
No 41
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=26.31 E-value=1.3e+02 Score=20.90 Aligned_cols=32 Identities=22% Similarity=0.197 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024038 233 ADELLQLAAARQQVQAHIAKLKRQISLIDGQQ 264 (273)
Q Consensus 233 ~~El~~l~~a~~kV~~~i~~lk~~l~~~e~~~ 264 (273)
+.+.+.|..-...+..+|..|++++..+...+
T Consensus 29 e~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 29 QAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555666666666666655555443
No 42
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Probab=25.58 E-value=1.4e+02 Score=23.96 Aligned_cols=35 Identities=11% Similarity=0.198 Sum_probs=24.4
Q ss_pred CCeeeEEEEEeCCCCCCcccceeeeEEEeCCCCCC
Q 024038 69 YQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFNN 103 (273)
Q Consensus 69 ~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~n 103 (273)
++...|.+.+.|+.+.....=+=++.+.+.+.|+.
T Consensus 31 ~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~ 65 (152)
T 2aak_A 31 NNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPN 65 (152)
T ss_dssp TEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTT
T ss_pred CCccEEEEEEeCCCCCCccCCEEEEEEECCCCCCC
Confidence 46889999999986544333344667777777763
No 43
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=25.42 E-value=1.4e+02 Score=20.53 Aligned_cols=31 Identities=13% Similarity=0.273 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024038 233 ADELLQLAAARQQVQAHIAKLKRQISLIDGQ 263 (273)
Q Consensus 233 ~~El~~l~~a~~kV~~~i~~lk~~l~~~e~~ 263 (273)
+.+.+.|.........+|..|+.++..+...
T Consensus 28 e~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 28 EKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666666555443
No 44
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1
Probab=24.81 E-value=1.3e+02 Score=24.37 Aligned_cols=35 Identities=14% Similarity=0.117 Sum_probs=23.7
Q ss_pred CCeeeEEEEEeCCCCCCcccceeeeEEEeCCCCCC
Q 024038 69 YQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFNN 103 (273)
Q Consensus 69 ~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~n 103 (273)
+..+.|.+.+.|+.+.....=+=++.+.+.+.|+.
T Consensus 40 ~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~ 74 (158)
T 1zdn_A 40 EDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPA 74 (158)
T ss_dssp SCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTT
T ss_pred CChhheeEEEECCCCCCccCcEEEEEEEcCCCCCC
Confidence 46889999999987644333344566666777763
No 45
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=24.34 E-value=1.6e+02 Score=21.84 Aligned_cols=37 Identities=19% Similarity=0.302 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccC
Q 024038 233 ADELLQLAAARQQVQAHIAKLKRQISLIDGQQQQLRS 269 (273)
Q Consensus 233 ~~El~~l~~a~~kV~~~i~~lk~~l~~~e~~~~~~k~ 269 (273)
.+||...++-....+++|.+....++.+..++-++++
T Consensus 32 ~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 32 IEELRQRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445555556666666666666677777666666655
No 46
>2q2f_A Selenoprotein S; anti-parallel coiled-coil, endoplasmic reticulum, membrane, selenocysteine, transmembrane, structural genomics; HET: MSE; 1.50A {Homo sapiens}
Probab=24.26 E-value=80 Score=24.34 Aligned_cols=36 Identities=19% Similarity=0.094 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 024038 233 ADELLQLAAARQQVQAHIAKLKRQISLIDGQQQQLR 268 (273)
Q Consensus 233 ~~El~~l~~a~~kV~~~i~~lk~~l~~~e~~~~~~k 268 (273)
..-.+.|.+||.+.+++....-++++.+..++++.|
T Consensus 43 v~RQEAl~aaRlRMQEeldAqAe~~keKQkqlEEeK 78 (89)
T 2q2f_A 43 VKRQEALAAARLKMQEELNAQVEKHKEKLKQLEEEK 78 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444567888888888887776666666666665544
No 47
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=23.88 E-value=1.3e+02 Score=22.60 Aligned_cols=30 Identities=17% Similarity=0.409 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 024038 238 QLAAARQQVQAHIAKLKRQISLIDGQQQQL 267 (273)
Q Consensus 238 ~l~~a~~kV~~~i~~lk~~l~~~e~~~~~~ 267 (273)
-|..+.++++.+|.+|.++-..+++.++.|
T Consensus 36 EL~~G~~KL~~mi~~l~~E~~~l~~ni~~l 65 (78)
T 3iv1_A 36 DLKKGHQKLEEMVTRLDQEVAEVDKNIELL 65 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677777777777777766666555444
No 48
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=23.26 E-value=1e+02 Score=23.19 Aligned_cols=32 Identities=16% Similarity=0.224 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024038 234 DELLQLAAARQQVQAHIAKLKRQISLIDGQQQ 265 (273)
Q Consensus 234 ~El~~l~~a~~kV~~~i~~lk~~l~~~e~~~~ 265 (273)
+-+.+|+.=+..|+..|+.|+++.++++..++
T Consensus 46 ~mi~~l~~E~~~l~~ni~~lk~K~~EL~~~l~ 77 (78)
T 3iv1_A 46 EMVTRLDQEVAEVDKNIELLKKKDEELSSALE 77 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44667777777778888888887777776543
No 49
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=23.20 E-value=1.3e+02 Score=22.49 Aligned_cols=33 Identities=15% Similarity=0.241 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024038 234 DELLQLAAARQQVQAHIAKLKRQISLIDGQQQQ 266 (273)
Q Consensus 234 ~El~~l~~a~~kV~~~i~~lk~~l~~~e~~~~~ 266 (273)
+.++.|....+.+.+.++.+.+++..++..+++
T Consensus 77 ~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~ 109 (117)
T 2zqm_A 77 EKIETLEVRLNALERQEKKLNEKLKELTAQIQS 109 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666666666666544
No 50
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=23.16 E-value=1e+02 Score=23.95 Aligned_cols=33 Identities=12% Similarity=0.213 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 024038 235 ELLQLAAARQQVQAHIAKLKRQISLIDGQQQQL 267 (273)
Q Consensus 235 El~~l~~a~~kV~~~i~~lk~~l~~~e~~~~~~ 267 (273)
-++.|.....++.+.++.+++++..++..++++
T Consensus 96 r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~ 128 (133)
T 1fxk_C 96 QKNELESTLQKMGENLRAITDIMMKLSPQAEEL 128 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666777778888888888888887777654
No 51
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Probab=22.74 E-value=1.4e+02 Score=24.77 Aligned_cols=36 Identities=17% Similarity=0.166 Sum_probs=25.9
Q ss_pred CCCeeeEEEEEeCCCCCCcccceeeeEEEeCCCCCC
Q 024038 68 EYQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFNN 103 (273)
Q Consensus 68 ~~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~n 103 (273)
+++.+.|.+.+.|+.+.....=+=++.+.+-+.|+.
T Consensus 34 ~~nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~ 69 (183)
T 3rz3_A 34 EGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPY 69 (183)
T ss_dssp TCCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTS
T ss_pred ccchhheeeeeeCCCCCCCCCCeEEEEEECCCCCCC
Confidence 457889999999987655444455677777788863
No 52
>1zym_A Enzyme I; phosphotransferase; 2.50A {Escherichia coli} SCOP: a.60.10.1 c.8.1.2 PDB: 1eza_A 1ezb_A 1ezc_A 1ezd_A 2eza_A 2ezb_A 2ezc_A 3ezb_A 3eze_A 3eza_A
Probab=22.68 E-value=91 Score=27.64 Aligned_cols=28 Identities=14% Similarity=0.265 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024038 232 EADELLQLAAARQQVQAHIAKLKRQISL 259 (273)
Q Consensus 232 E~~El~~l~~a~~kV~~~i~~lk~~l~~ 259 (273)
-..|+.||..|..++.++++.+++++..
T Consensus 36 ~~~E~~rl~~Al~~~~~eL~~l~~~~~~ 63 (258)
T 1zym_A 36 VDQEVERFLSGRAKASAQLETIKTKAGE 63 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4579999999999999999999887643
No 53
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=22.60 E-value=89 Score=18.91 Aligned_cols=25 Identities=20% Similarity=0.373 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024038 237 LQLAAARQQVQAHIAKLKRQISLID 261 (273)
Q Consensus 237 ~~l~~a~~kV~~~i~~lk~~l~~~e 261 (273)
.||..-...+.++|+.|.-++..+|
T Consensus 3 rrlkqknarlkqeiaaleyeiaale 27 (28)
T 3ra3_B 3 RRLKQKNARLKQEIAALEYEIAALE 27 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHhc
Confidence 3455555555666666555544443
No 54
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}
Probab=22.51 E-value=1.6e+02 Score=23.21 Aligned_cols=35 Identities=11% Similarity=0.127 Sum_probs=23.5
Q ss_pred CCeeeEEEEEeCCCCCCcccceeeeEEEeCCCCCC
Q 024038 69 YQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFNN 103 (273)
Q Consensus 69 ~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~n 103 (273)
++...|.+.+.|+.+.....=+=++.+.+.+.|+.
T Consensus 47 ~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~ 81 (136)
T 2h2y_A 47 SNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPL 81 (136)
T ss_dssp TCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTT
T ss_pred ccccccEEEEECCCCCceeCCEEEEEEEeCCCCCC
Confidence 46889999999986644333344566666677763
No 55
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1
Probab=22.51 E-value=1.7e+02 Score=22.68 Aligned_cols=34 Identities=12% Similarity=0.153 Sum_probs=22.8
Q ss_pred CCeeeEEEEEeCCCCCCcccceeeeEEEeCCCCC
Q 024038 69 YQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFN 102 (273)
Q Consensus 69 ~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~ 102 (273)
+....|.+-+.|+.+.....=+=++.+.+-+.|+
T Consensus 33 ~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP 66 (125)
T 2fo3_A 33 NNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYP 66 (125)
T ss_dssp TCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTT
T ss_pred chhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCC
Confidence 4688999999998664433334455666667765
No 56
>2cly_B ATP synthase D chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.53.1.1 PDB: 2wss_U*
Probab=22.28 E-value=87 Score=26.11 Aligned_cols=32 Identities=13% Similarity=0.226 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024038 232 EADELLQLAAARQQVQAHIAKLKRQISLIDGQ 263 (273)
Q Consensus 232 E~~El~~l~~a~~kV~~~i~~lk~~l~~~e~~ 263 (273)
|.+-+..+.+..+.+.++|++|.++|..++..
T Consensus 93 e~~~~~~a~~~~~~s~~ri~~lekeL~~i~~~ 124 (160)
T 2cly_B 93 EKEDVKSCAEFLTQSKTRIQEYEKELEKMRNI 124 (160)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 35556667777888888888888888876643
No 57
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Probab=22.24 E-value=1.7e+02 Score=23.45 Aligned_cols=35 Identities=11% Similarity=0.070 Sum_probs=24.0
Q ss_pred CCeeeEEEEEeCCCCCCcccceeeeEEEeCCCCCC
Q 024038 69 YQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFNN 103 (273)
Q Consensus 69 ~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~n 103 (273)
++...|.+.+.|+.+.....=+=++.+.+.+.|+.
T Consensus 32 ~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~ 66 (155)
T 1jat_A 32 DNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPM 66 (155)
T ss_dssp TEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTT
T ss_pred CchhEEEEEEECCCCCCccCcEEEEEEEcCCCCCC
Confidence 47889999999987644333344566666777763
No 58
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=22.16 E-value=1.2e+02 Score=22.82 Aligned_cols=28 Identities=14% Similarity=0.116 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024038 237 LQLAAARQQVQAHIAKLKRQISLIDGQQ 264 (273)
Q Consensus 237 ~~l~~a~~kV~~~i~~lk~~l~~~e~~~ 264 (273)
+.+..-...+..+|..+++++..++.++
T Consensus 67 ~~~~~~l~~l~~~i~~l~~~i~~l~~~~ 94 (112)
T 1l8d_A 67 SKYHLDLNNSKNTLAKLIDRKSELEREL 94 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444433
No 59
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=22.15 E-value=74 Score=24.70 Aligned_cols=28 Identities=11% Similarity=0.210 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024038 236 LLQLAAARQQVQAHIAKLKRQISLIDGQ 263 (273)
Q Consensus 236 l~~l~~a~~kV~~~i~~lk~~l~~~e~~ 263 (273)
+.+|.+.++..++++.+++++++.+.+.
T Consensus 9 ~~~l~~~~~~l~~~i~~lkeel~~L~~~ 36 (109)
T 2wg5_A 9 MKQLEDKVEELLSKNYHLENEVARLRSP 36 (109)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4566777777777777777777776643
No 60
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=21.84 E-value=2e+02 Score=19.87 Aligned_cols=30 Identities=20% Similarity=0.311 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 024038 239 LAAARQQVQAHIAKLKRQISLIDGQQQQLR 268 (273)
Q Consensus 239 l~~a~~kV~~~i~~lk~~l~~~e~~~~~~k 268 (273)
|..--..+..+...|+.++..+..+...||
T Consensus 27 Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 27 LEEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444455555555444443
No 61
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1
Probab=21.83 E-value=2.4e+02 Score=22.35 Aligned_cols=35 Identities=17% Similarity=0.275 Sum_probs=24.0
Q ss_pred CCCeeeEEEEEeCCCCCCcccceeeeEEEeCCCCC
Q 024038 68 EYQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFN 102 (273)
Q Consensus 68 ~~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~ 102 (273)
+++...|.+.+.|+.+.....=+=++.+.+-+.|+
T Consensus 50 ~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP 84 (136)
T 2a7l_A 50 QNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYP 84 (136)
T ss_dssp CCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTT
T ss_pred ccccceeEEEEECCCCCccccEEEEEEEECCCCCC
Confidence 45789999999998764433334455666667776
No 62
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=21.74 E-value=1.6e+02 Score=18.47 Aligned_cols=23 Identities=22% Similarity=0.423 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024038 234 DELLQLAAARQQVQAHIAKLKRQ 256 (273)
Q Consensus 234 ~El~~l~~a~~kV~~~i~~lk~~ 256 (273)
+++.+|.+.-+++++.+..|.+.
T Consensus 6 e~~r~l~~ivq~lq~r~drle~t 28 (32)
T 2akf_A 6 EDVRNLNAIVQKLQERLDRLEET 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666655555555555443
No 63
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=21.28 E-value=1.1e+02 Score=19.58 Aligned_cols=22 Identities=41% Similarity=0.501 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhc
Q 024038 246 VQAHIAKLKRQISLIDGQQQQL 267 (273)
Q Consensus 246 V~~~i~~lk~~l~~~e~~~~~~ 267 (273)
-+++|++||+|-..||.++..|
T Consensus 12 ~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 12 HQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHhhHHHHHHHHHHHHHHHHhc
Confidence 4678888888888888776544
No 64
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=20.98 E-value=1.7e+02 Score=21.53 Aligned_cols=34 Identities=9% Similarity=0.220 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024038 233 ADELLQLAAARQQVQAHIAKLKRQISLIDGQQQQ 266 (273)
Q Consensus 233 ~~El~~l~~a~~kV~~~i~~lk~~l~~~e~~~~~ 266 (273)
.+.++.|....+.+.+.+..++.++..++..+++
T Consensus 71 ~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~ 104 (107)
T 1fxk_A 71 QEKLETLQLREKTIERQEERVMKKLQEMQVNIQE 104 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446666677777777777777777777766654
No 65
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=20.69 E-value=1.2e+02 Score=24.01 Aligned_cols=26 Identities=15% Similarity=0.137 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024038 236 LLQLAAARQQVQAHIAKLKRQISLID 261 (273)
Q Consensus 236 l~~l~~a~~kV~~~i~~lk~~l~~~e 261 (273)
-..|-++-.+.++|++.|+.++.++.
T Consensus 6 ~~~~~~~~~~~e~e~~~l~~~~~el~ 31 (125)
T 1joc_A 6 RRALLERCLKGEGEIEKLQTKVLELQ 31 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33333343444444444444444333
No 66
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=20.51 E-value=1.8e+02 Score=20.25 Aligned_cols=35 Identities=17% Similarity=0.230 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 024038 234 DELLQLAAARQQVQAHIAKLKRQISLIDGQQQQLR 268 (273)
Q Consensus 234 ~El~~l~~a~~kV~~~i~~lk~~l~~~e~~~~~~k 268 (273)
+.+..|..--..+..+...|+.++..+..+.+.|+
T Consensus 23 ~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk 57 (63)
T 2wt7_A 23 ELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLE 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666777777777777777776665
No 67
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=20.26 E-value=1.8e+02 Score=22.03 Aligned_cols=34 Identities=24% Similarity=0.450 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024038 233 ADELLQLAAARQQVQAHIAKLKRQISLIDGQQQQ 266 (273)
Q Consensus 233 ~~El~~l~~a~~kV~~~i~~lk~~l~~~e~~~~~ 266 (273)
+.+...|..-...+..+|+.|+.++..+...+.+
T Consensus 42 ~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 42 QHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666677777777777666655544
No 68
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=20.08 E-value=99 Score=26.33 Aligned_cols=38 Identities=11% Similarity=0.244 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCC
Q 024038 233 ADELLQLAAARQQVQAHIAKLKRQISLIDGQQQQLRST 270 (273)
Q Consensus 233 ~~El~~l~~a~~kV~~~i~~lk~~l~~~e~~~~~~k~~ 270 (273)
..=|+.|..++.++.+.+.........+|.++..|||.
T Consensus 102 ksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPe 139 (170)
T 3l4q_C 102 KSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPD 139 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 45577888899999999999999999999999998873
No 69
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=20.08 E-value=1.6e+02 Score=24.82 Aligned_cols=35 Identities=9% Similarity=0.027 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccC
Q 024038 235 ELLQLAAARQQVQAHIAKLKRQISLIDGQQQQLRS 269 (273)
Q Consensus 235 El~~l~~a~~kV~~~i~~lk~~l~~~e~~~~~~k~ 269 (273)
...+|.+-+++-+.++..+++++..+..+++.|-.
T Consensus 72 Qq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~ 106 (175)
T 3lay_A 72 QQATAQKIYDDYYTQTSALRQQLISKRYEYNALLT 106 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666666677777788888888877776643
Done!