Query 024039
Match_columns 273
No_of_seqs 180 out of 381
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 08:28:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024039.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024039hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2567 Uncharacterized conser 100.0 2.3E-46 5.1E-51 322.3 13.5 142 1-142 1-142 (179)
2 PRK04015 DNA/RNA-binding prote 99.8 4.3E-20 9.3E-25 146.7 12.0 90 16-115 2-91 (91)
3 TIGR00285 DNA-binding protein 99.8 1E-18 2.3E-23 137.7 11.7 87 18-114 1-87 (87)
4 COG1581 Ssh10b Archaeal DNA-bi 99.8 3.2E-18 7E-23 134.7 12.0 88 17-115 3-91 (91)
5 PF01918 Alba: Alba; InterPro 99.7 4.9E-16 1.1E-20 115.6 9.9 64 19-82 1-68 (70)
6 PF12328 Rpp20: Rpp20 subunit 99.4 3.2E-12 7E-17 109.1 10.3 93 18-111 3-144 (144)
7 KOG3973 Uncharacterized conser 97.1 0.0012 2.5E-08 64.5 7.0 13 101-113 287-299 (465)
8 KOG0921 Dosage compensation co 95.9 0.031 6.8E-07 60.4 8.8 11 190-200 1233-1243(1282)
9 KOG0921 Dosage compensation co 95.6 0.035 7.6E-07 60.0 7.7 8 85-92 1081-1088(1282)
10 KOG3973 Uncharacterized conser 93.4 0.16 3.5E-06 49.9 5.8 7 194-200 379-385 (465)
11 PF05918 API5: Apoptosis inhib 91.6 0.086 1.9E-06 54.2 1.5 12 29-40 390-401 (556)
12 PF04232 SpoVS: Stage V sporul 87.5 13 0.00028 29.7 11.3 51 19-71 2-53 (86)
13 PTZ00146 fibrillarin; Provisio 84.1 1.8 3.8E-05 41.4 5.0 20 225-244 133-153 (293)
14 KOG3262 H/ACA small nucleolar 78.2 12 0.00027 34.1 7.9 8 106-113 104-111 (215)
15 TIGR01648 hnRNP-R-Q heterogene 59.7 13 0.00027 38.9 4.5 8 107-114 298-305 (578)
16 KOG1596 Fibrillarin and relate 57.6 22 0.00048 34.1 5.3 12 239-250 140-151 (317)
17 PF09363 XFP_C: XFP C-terminal 38.1 66 0.0014 29.5 5.1 42 44-89 33-75 (203)
18 PRK02399 hypothetical protein; 35.3 1.1E+02 0.0023 31.0 6.4 45 17-61 185-232 (406)
19 PRK10590 ATP-dependent RNA hel 33.3 78 0.0017 31.1 5.2 12 58-69 256-267 (456)
20 cd08982 GH43_3 Glycosyl hydrol 32.5 47 0.001 31.1 3.3 37 102-138 248-287 (295)
21 KOG3875 Peroxisomal biogenesis 32.1 82 0.0018 31.1 4.9 16 208-223 91-106 (362)
22 PF06792 UPF0261: Uncharacteri 32.0 1.3E+02 0.0027 30.4 6.4 46 16-61 183-231 (403)
23 PRK05261 putative phosphoketol 31.8 65 0.0014 35.0 4.6 30 45-74 613-643 (785)
24 PF02780 Transketolase_C: Tran 30.0 1.4E+02 0.0031 23.7 5.3 26 45-70 9-34 (124)
25 PRK11634 ATP-dependent RNA hel 27.5 1E+02 0.0022 32.2 5.1 9 60-68 258-266 (629)
26 KOG3428 Small nuclear ribonucl 27.4 31 0.00067 28.8 1.0 10 149-158 96-105 (109)
27 TIGR00106 uncharacterized prot 25.9 1.3E+02 0.0028 24.1 4.3 33 25-58 13-45 (97)
28 PF02089 Palm_thioest: Palmito 25.4 71 0.0015 30.5 3.2 41 44-88 5-48 (279)
29 KOG0523 Transketolase [Carbohy 25.4 73 0.0016 33.8 3.5 67 17-93 480-546 (632)
30 KOG3262 H/ACA small nucleolar 22.4 1.6E+02 0.0034 27.2 4.6 9 190-198 205-213 (215)
31 PTZ00034 40S ribosomal protein 21.7 60 0.0013 27.7 1.7 10 89-98 67-76 (124)
32 COG0290 InfC Translation initi 20.5 4.9E+02 0.011 23.6 7.2 58 17-74 89-149 (176)
No 1
>KOG2567 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.3e-46 Score=322.35 Aligned_cols=142 Identities=44% Similarity=0.642 Sum_probs=136.9
Q ss_pred CCCcccccCCCCCCCCCCCEEEEcCCCchHHHHHHHHHHHhhcCCCEEEEEEcchhHHHHHHHHHHHHHHhCCceeeeEE
Q 024039 1 MDRYQKVEKPKTETAISENELRITAQGRLRNYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRRVVGLHQNTST 80 (273)
Q Consensus 1 MD~Y~rV~kp~~e~p~~~NeIrVt~k~~irnYV~yA~~LL~e~g~~eVvIkA~GkAIsKAV~VAEILKrRi~GLhQ~t~I 80 (273)
||.|++|.||.++.|++.|+|||+.+++++|||.||+.+|+++..+.|||+|||+||+|||+||||||||++||||+|.|
T Consensus 1 ~~~e~~~~kP~~d~pp~a~emrV~~g~kirN~i~~A~~~L~~~~~r~VVfsg~Grai~KTVscaEilKrRipgLhQ~t~l 80 (179)
T KOG2567|consen 1 MSVEQPASKPFPDLPPDANEMRVKSGSKIRNLIEFATELLQKGSHRCVVFSGSGRAIVKTVSCAEILKRRIPGLHQVTRL 80 (179)
T ss_pred CccccccCCCcccCCCCcceEEEccCchHHHHHHHHHHHhhCCCeeEEEEecCCcceeeeeeHHHHHhhhCcchhhhcee
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeeeeeeccCCCccceeeeeeeeEEEEEecccCCCCCCCcCCCCCCCCCccCCCcCcc
Q 024039 81 GSIDITDVWEPLEEGLLPLETTRHVSAITITLSRKELDSSSLGYQPPVPTDQVKPLADYDDG 142 (273)
Q Consensus 81 ssv~I~De~EP~eEGL~~l~~tR~VS~I~ItLSk~~LD~~~pGYQ~Plp~~qvk~~~~~~~~ 142 (273)
.+++|+|.|+|.+|||++++++||||+|+|+||+++||++++|||+|.|..+.+.+..-++.
T Consensus 81 ~~~sv~d~W~p~~eGl~pl~vtRhVp~l~IlLS~deL~~~~~GyQ~P~~~p~p~~~~~~p~~ 142 (179)
T KOG2567|consen 81 RYTSVEDVWEPTEEGLEPLEVTRHVPMLHILLSLDELDPTSPGYQPPNPQPHPRSQPRHPYS 142 (179)
T ss_pred eeeehhhcccccccCccceEEeeccceEEEEEecccCCCCCCCccCCCCCCCCCCcccCCcc
Confidence 99999999999999999999999999999999999999999999999998887776655553
No 2
>PRK04015 DNA/RNA-binding protein albA; Provisional
Probab=99.83 E-value=4.3e-20 Score=146.70 Aligned_cols=90 Identities=33% Similarity=0.462 Sum_probs=74.2
Q ss_pred CCCCEEEEcCCCchHHHHHHHHHHHhhcCCCEEEEEEcchhHHHHHHHHHHHHHHhCCceeeeEEEEEEeeeeeeeccCC
Q 024039 16 ISENELRITAQGRLRNYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRRVVGLHQNTSTGSIDITDVWEPLEEG 95 (273)
Q Consensus 16 ~~~NeIrVt~k~~irnYV~yA~~LL~e~g~~eVvIkA~GkAIsKAV~VAEILKrRi~GLhQ~t~Issv~I~De~EP~eEG 95 (273)
..+|+|+|++|+ +.+||.+++.+|+ ++.++|+|||+|+||+|||+|||+||+|+...+ ++..+++.++-...++|
T Consensus 2 ~~en~i~Ig~kp-vmnYV~~~~~~l~-~g~~eV~iKa~G~aIskAV~vaEilk~r~~~~v---~v~~I~i~se~i~~~~g 76 (91)
T PRK04015 2 AEENVVLVGKKP-VMNYVLAVLTQFN-QGAKEVVIKARGRAISKAVDVAEIVRNRFLPDV---EIKEIKIGTEEVTSEDG 76 (91)
T ss_pred CCCCEEEEcCCc-HHHHHHHHHHHHh-CCCCeEEEEEeccccchhhhHHHHHHHhccCCe---EEEEEEeccEEeecCCC
Confidence 468999999985 5599999999998 589999999999999999999999999985445 45555554443333466
Q ss_pred CccceeeeeeeeEEEEEecc
Q 024039 96 LLPLETTRHVSAITITLSRK 115 (273)
Q Consensus 96 L~~l~~tR~VS~I~ItLSk~ 115 (273)
.+|+||+|+|+|+++
T Consensus 77 -----~~~~VS~IEI~l~k~ 91 (91)
T PRK04015 77 -----RESNVSTIEIVLEKK 91 (91)
T ss_pred -----cEEEEEEEEEEEecC
Confidence 789999999999874
No 3
>TIGR00285 DNA-binding protein Alba. This protein appears so far only in the Archaea, but may be universal there. There is a single member in three of the first four completed archaeal genomes, and a second copy in A. fulgidus. In Sulfolobus shibatae there is a tandem second copy that is poorly conserved and scores below the trusted cutoff; all other members of the family are conserved at greater than 50 % pairwise identity.
Probab=99.79 E-value=1e-18 Score=137.69 Aligned_cols=87 Identities=33% Similarity=0.471 Sum_probs=75.7
Q ss_pred CCEEEEcCCCchHHHHHHHHHHHhhcCCCEEEEEEcchhHHHHHHHHHHHHHHhCCceeeeEEEEEEeeeeeeeccCCCc
Q 024039 18 ENELRITAQGRLRNYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRRVVGLHQNTSTGSIDITDVWEPLEEGLL 97 (273)
Q Consensus 18 ~NeIrVt~k~~irnYV~yA~~LL~e~g~~eVvIkA~GkAIsKAV~VAEILKrRi~GLhQ~t~Issv~I~De~EP~eEGL~ 97 (273)
+|.|+|++|+-| |||..++.+|++ +.++|+|||+|+||+|||+|||+||+|+...+ ++..+++.++-.+.++|
T Consensus 1 e~~i~vG~KPvm-nYVlavlt~fn~-g~~eV~iKarG~aIskAVdvaeiik~r~~~~v---~v~~I~i~te~~~~~~G-- 73 (87)
T TIGR00285 1 ENVVYIGNKPVM-NYVLAVLTQLNS-GADEVIIKARGRAISRAVDVAEIVRNRFIPDI---KIKKIKIGTEEIKSEQG-- 73 (87)
T ss_pred CCEEEEcCCcHH-HHHHHHHHHHhC-CCCeEEEEEecchhhhHHHHHHHHHHhccCCc---eEEEEEeccEEeecCCC--
Confidence 589999999766 999999999984 89999999999999999999999999985544 67777776666666778
Q ss_pred cceeeeeeeeEEEEEec
Q 024039 98 PLETTRHVSAITITLSR 114 (273)
Q Consensus 98 ~l~~tR~VS~I~ItLSk 114 (273)
.+|+||+|+|+|++
T Consensus 74 ---~~~~VStIEI~l~~ 87 (87)
T TIGR00285 74 ---REVNVSTIEIVLAK 87 (87)
T ss_pred ---ceeeEEEEEEEEeC
Confidence 78999999999975
No 4
>COG1581 Ssh10b Archaeal DNA-binding protein [Transcription]
Probab=99.78 E-value=3.2e-18 Score=134.72 Aligned_cols=88 Identities=36% Similarity=0.524 Sum_probs=76.6
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHhhcCCCEEEEEEcchhHHHHHHHHHHHHHHh-CCceeeeEEEEEEeeeeeeeccCC
Q 024039 17 SENELRITAQGRLRNYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRRV-VGLHQNTSTGSIDITDVWEPLEEG 95 (273)
Q Consensus 17 ~~NeIrVt~k~~irnYV~yA~~LL~e~g~~eVvIkA~GkAIsKAV~VAEILKrRi-~GLhQ~t~Issv~I~De~EP~eEG 95 (273)
++|+|+|++|+-+ |||-.++++|++ +.++|+|||+|+||||||++|||+|.|| |+ ++|..+++.++-...++|
T Consensus 3 ~envV~vG~KPvm-NYVlAvlt~fn~-g~~eViiKARGraIskAVDvaeivRnrf~p~----v~ik~Iki~se~~~~~~g 76 (91)
T COG1581 3 EENVVLVGKKPVM-NYVLAVLTQFNE-GADEVIIKARGRAISKAVDVAEIVRNRFIPD----VQIKDIKIGTEELEGEDG 76 (91)
T ss_pred CccEEEEcCcchH-HHHHHHHHHHHc-CCCEEEEEecchhhHhhHhHHHHHHHhcCCC----ceEEEEEecceeeecCCC
Confidence 4699999999777 999999999986 7999999999999999999999999998 44 478888887665556677
Q ss_pred CccceeeeeeeeEEEEEecc
Q 024039 96 LLPLETTRHVSAITITLSRK 115 (273)
Q Consensus 96 L~~l~~tR~VS~I~ItLSk~ 115 (273)
.+++||+|+|.|.+.
T Consensus 77 -----r~~~VS~IeI~L~k~ 91 (91)
T COG1581 77 -----RTRNVSTIEIVLAKK 91 (91)
T ss_pred -----ceeeEEEEEEEEecC
Confidence 688999999999873
No 5
>PF01918 Alba: Alba; InterPro: IPR002775 Members of this family include the archaeal protein Alba and a number of eukaryotic proteins with no known function. The DNA/RNA-binding protein Alba binds double-stranded DNA tightly but without sequence specificity. It binds rRNA and mRNA in vivo, and may play a role in maintaining the structural and functional stability of RNA, and, perhaps, ribosomes. It is distributed uniformly and abundantly on the chromosome. Alba has been shown to bind DNA and affect DNA supercoiling in a temperature dependent manner []. It is regulated by acetylation (alba = acetylation lowers binding affinity) by the Sir2 protein. Alba is proposed to play a role in establishment or maintenance of chromatin architecture and thereby in transcription repression. For further information see [].; GO: 0003676 nucleic acid binding; PDB: 3TOE_B 3IAB_A 1NFJ_A 1NFH_B 2Q3V_B 1VM0_B 1NH9_A 1Y9X_A 3U6Y_C 2H9U_A ....
Probab=99.67 E-value=4.9e-16 Score=115.65 Aligned_cols=64 Identities=41% Similarity=0.639 Sum_probs=57.4
Q ss_pred CEEEEcCCCchHHHHHHHHHHH---hhcCCCEEEEEEcchhHHHHHHHHHHHHHHhC-CceeeeEEEE
Q 024039 19 NELRITAQGRLRNYISYAISLL---EEKGANEVVLKATGRAINKTVMIAELLKRRVV-GLHQNTSTGS 82 (273)
Q Consensus 19 NeIrVt~k~~irnYV~yA~~LL---~e~g~~eVvIkA~GkAIsKAV~VAEILKrRi~-GLhQ~t~Iss 82 (273)
|+|+|++++++++||.+|+++| ++.+.++|+|+|+|+||+|||+|||+||+++. +|||++.+.+
T Consensus 1 n~I~V~~~~~~~~~v~~~~~~L~~~~~~~~~~V~l~g~G~aI~kaI~vaei~K~~~~~~~~qv~~~t~ 68 (70)
T PF01918_consen 1 NEIYVSSNSPIKSYVKRALKLLEGRENGKNDEVVLKGRGKAISKAISVAEILKRRFGEGLYQVNKITS 68 (70)
T ss_dssp SEEEE-STS-HHHHHHHHHHHHT-TTHTTCSEEEEEEECCHHHHHHHHHHHHHHHTSTTTEEEEEEEE
T ss_pred CEEEECCCCCHHHHHHHHHHHHhhhhcCCCCEEEEEEEcHHHHHHHHHHHHHHHhhcCCCEEEEEEec
Confidence 7999999999999999999999 44579999999999999999999999999994 8999988765
No 6
>PF12328 Rpp20: Rpp20 subunit of nuclear RNase MRP and P; PDB: 3IAB_B.
Probab=99.37 E-value=3.2e-12 Score=109.07 Aligned_cols=93 Identities=25% Similarity=0.381 Sum_probs=67.2
Q ss_pred CCEEEEcCCCchHHHHHHHHHHHhhc-------------------C------------CCEEEEEEcchhHHHHHHHHHH
Q 024039 18 ENELRITAQGRLRNYISYAISLLEEK-------------------G------------ANEVVLKATGRAINKTVMIAEL 66 (273)
Q Consensus 18 ~NeIrVt~k~~irnYV~yA~~LL~e~-------------------g------------~~eVvIkA~GkAIsKAV~VAEI 66 (273)
++.|+|+++++|-..|..+.++|... + .++|+|||||+||+||++||.-
T Consensus 3 ~~~iyVss~TPfmSavKRv~K~L~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~gtGkAIeKal~la~~ 82 (144)
T PF12328_consen 3 PKVIYVSSKTPFMSAVKRVRKLLDKAEKRATSSVNLAKKKKSQKKKIAQLAEGSEALKSEEVTVKGTGKAIEKALSLALW 82 (144)
T ss_dssp TTEEE--SS--HHHHHHHHHHHHHHHHHH----------------T-------------SEEEEEEEGGGHHHHHHHHHH
T ss_pred CcEEEEecCCchHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccCccEEEEEeccHHHHHHHHHHHH
Confidence 68999999999999999999999621 1 2799999999999999999999
Q ss_pred HHHHhCCceeeeEEEEEEeeeeeeecc------------------CCCccceeeeeeeeEEEE
Q 024039 67 LKRRVVGLHQNTSTGSIDITDVWEPLE------------------EGLLPLETTRHVSAITIT 111 (273)
Q Consensus 67 LKrRi~GLhQ~t~Issv~I~De~EP~e------------------EGL~~l~~tR~VS~I~It 111 (273)
+++.- ++-..+.++||.+.|++++.+ +..++..++|+||+|+|.
T Consensus 83 Fq~~~-~~~V~V~TgTV~vvDdi~~~e~~~~~~~~~~~~~~~~~~~~~~~esR~R~vS~VEv~ 144 (144)
T PF12328_consen 83 FQRKK-GYKVEVRTGTVEVVDDIVEDEDEDEDEEESEEREDDDDDEDEEPESRTRWVSMVEVA 144 (144)
T ss_dssp HHHTT----EEEEEEEEEEEEE-----------------------------EEEEEEEEEEEE
T ss_pred HhhcC-CeEEEEEeceEEEEEEEeeccccccccccccccccCccccccCccceEEeeEEEEEC
Confidence 98876 566679999999999999653 456778899999999984
No 7
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=97.13 E-value=0.0012 Score=64.46 Aligned_cols=13 Identities=23% Similarity=0.064 Sum_probs=6.9
Q ss_pred eeeeeeeEEEEEe
Q 024039 101 TTRHVSAITITLS 113 (273)
Q Consensus 101 ~tR~VS~I~ItLS 113 (273)
.+|..|.|+=.+.
T Consensus 287 Re~Taski~k~~i 299 (465)
T KOG3973|consen 287 RERTASKIHKLSI 299 (465)
T ss_pred hhhhhhhhccccc
Confidence 3455566655443
No 8
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=95.94 E-value=0.031 Score=60.39 Aligned_cols=11 Identities=18% Similarity=0.166 Sum_probs=6.0
Q ss_pred CccccCCCCCC
Q 024039 190 RSFWGHGRRYD 200 (273)
Q Consensus 190 ~~~~g~grg~~ 200 (273)
+||||-|+|++
T Consensus 1233 gGfrnnggGdy 1243 (1282)
T KOG0921|consen 1233 GGFRNNGGGDY 1243 (1282)
T ss_pred CccccCCCCCC
Confidence 34666566544
No 9
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=95.62 E-value=0.035 Score=60.01 Aligned_cols=8 Identities=38% Similarity=0.596 Sum_probs=4.0
Q ss_pred eeeeeeec
Q 024039 85 ITDVWEPL 92 (273)
Q Consensus 85 I~De~EP~ 92 (273)
..|+|.-+
T Consensus 1081 ~VDdWIkl 1088 (1282)
T KOG0921|consen 1081 RVDDWIKL 1088 (1282)
T ss_pred EeeceeeE
Confidence 34555544
No 10
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=93.37 E-value=0.16 Score=49.92 Aligned_cols=7 Identities=43% Similarity=0.881 Sum_probs=3.3
Q ss_pred cCCCCCC
Q 024039 194 GHGRRYD 200 (273)
Q Consensus 194 g~grg~~ 200 (273)
|.|+||-
T Consensus 379 GGGggyq 385 (465)
T KOG3973|consen 379 GGGGGYQ 385 (465)
T ss_pred CCCCCCc
Confidence 4444554
No 11
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=91.59 E-value=0.086 Score=54.22 Aligned_cols=12 Identities=25% Similarity=0.263 Sum_probs=7.5
Q ss_pred hHHHHHHHHHHH
Q 024039 29 LRNYISYAISLL 40 (273)
Q Consensus 29 irnYV~yA~~LL 40 (273)
++.||..+..-|
T Consensus 390 ~q~yikkl~~~l 401 (556)
T PF05918_consen 390 TQAYIKKLKQAL 401 (556)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 456666666666
No 12
>PF04232 SpoVS: Stage V sporulation protein S (SpoVS); InterPro: IPR007347 In Bacillus subtilis this protein interferes with sporulation at an early stage and this inhibitory effect is overcome by SpoIIB and SpoVG. SpoVS seems to play a positive role in allowing progression beyond stage V of sporulation. Null mutations in the spoVS gene block sporulation at stage V, impairing the development of heat resistance and coat assembly [].; PDB: 2EH1_B 2EK0_B.
Probab=87.54 E-value=13 Score=29.70 Aligned_cols=51 Identities=20% Similarity=0.314 Sum_probs=35.1
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcCCCEEEEEEcc-hhHHHHHHHHHHHHHHh
Q 024039 19 NELRITAQGRLRNYISYAISLLEEKGANEVVLKATG-RAINKTVMIAELLKRRV 71 (273)
Q Consensus 19 NeIrVt~k~~irnYV~yA~~LL~e~g~~eVvIkA~G-kAIsKAV~VAEILKrRi 71 (273)
+.++|+++++....-..-...|.+ ...+.|.|+| .|+++||.-.-|-+.-+
T Consensus 2 e~LKVSs~S~p~~vAgAIa~~lre--~~~v~lqaiGa~AvnqAvKAIAiAR~~l 53 (86)
T PF04232_consen 2 EVLKVSSKSNPNAVAGAIAGVLRE--GGKVELQAIGAGAVNQAVKAIAIARGYL 53 (86)
T ss_dssp -EEEE-TT--HHHHHHHHHHHHHH--TSEEEEEE-SHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEcCCCCHHHHHHHHHHHHhc--CCcEEEEEECHHHHHHHHHHHHHHHHhh
Confidence 468999999997766666667765 3699999999 78888887766666554
No 13
>PTZ00146 fibrillarin; Provisional
Probab=84.13 E-value=1.8 Score=41.44 Aligned_cols=20 Identities=10% Similarity=0.109 Sum_probs=8.2
Q ss_pred CCeeeeeeecc-hhHHHHHhh
Q 024039 225 GNCLLAFSCSY-SLSFILAKQ 244 (273)
Q Consensus 225 g~~~~~~~~~~-~~~~~~~~~ 244 (273)
|..++-.-|+. .++..||+.
T Consensus 133 G~~VLDLGaG~G~~t~~lAdi 153 (293)
T PTZ00146 133 GSKVLYLGAASGTTVSHVSDL 153 (293)
T ss_pred CCEEEEeCCcCCHHHHHHHHH
Confidence 34444444443 233344443
No 14
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=78.24 E-value=12 Score=34.14 Aligned_cols=8 Identities=25% Similarity=0.198 Sum_probs=4.0
Q ss_pred eeEEEEEe
Q 024039 106 SAITITLS 113 (273)
Q Consensus 106 S~I~ItLS 113 (273)
+.++|+++
T Consensus 104 ~~fsIK~~ 111 (215)
T KOG3262|consen 104 VHFSIKPS 111 (215)
T ss_pred cEEEEecC
Confidence 34555554
No 15
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=59.72 E-value=13 Score=38.86 Aligned_cols=8 Identities=38% Similarity=0.721 Sum_probs=3.6
Q ss_pred eEEEEEec
Q 024039 107 AITITLSR 114 (273)
Q Consensus 107 ~I~ItLSk 114 (273)
.|+|.+++
T Consensus 298 ~I~V~~Ak 305 (578)
T TIGR01648 298 EIEVTLAK 305 (578)
T ss_pred EEEEEEcc
Confidence 34444443
No 16
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=57.63 E-value=22 Score=34.10 Aligned_cols=12 Identities=42% Similarity=0.440 Sum_probs=5.8
Q ss_pred HHHHhhhcCcch
Q 024039 239 FILAKQLHGVDK 250 (273)
Q Consensus 239 ~~~~~~~~~~~~ 250 (273)
-+.|--|-|||.
T Consensus 140 KLAA~I~gGvdn 151 (317)
T KOG1596|consen 140 KLAAGILGGVDN 151 (317)
T ss_pred HHHHHhhcCccc
Confidence 334444555554
No 17
>PF09363 XFP_C: XFP C-terminal domain; InterPro: IPR018969 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=38.11 E-value=66 Score=29.53 Aligned_cols=42 Identities=21% Similarity=0.339 Sum_probs=30.9
Q ss_pred CCCEEEEEEcc-hhHHHHHHHHHHHHHHhCCceeeeEEEEEEeeeee
Q 024039 44 GANEVVLKATG-RAINKTVMIAELLKRRVVGLHQNTSTGSIDITDVW 89 (273)
Q Consensus 44 g~~eVvIkA~G-kAIsKAV~VAEILKrRi~GLhQ~t~Issv~I~De~ 89 (273)
..+.|||-+.| -..--++..|++|++.+|+| +|..|.+.|-.
T Consensus 33 ~ePDVVlA~aGd~pT~E~lAA~~lLr~~~P~l----kiRvVNVvDLm 75 (203)
T PF09363_consen 33 EEPDVVLACAGDVPTLEVLAAASLLREHFPEL----KIRVVNVVDLM 75 (203)
T ss_dssp TT-SEEEEEESHHHHHHHHHHHHHHHHT--T------EEEEEESBGG
T ss_pred CCCCEEEEecCchhhHHHHHHHHHHHHhccCc----eEEEEEEeEcc
Confidence 46889999999 56667899999999999998 78888887753
No 18
>PRK02399 hypothetical protein; Provisional
Probab=35.31 E-value=1.1e+02 Score=30.98 Aligned_cols=45 Identities=29% Similarity=0.375 Sum_probs=36.5
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHhhcCCCEEEEEEcc---hhHHHHH
Q 024039 17 SENELRITAQGRLRNYISYAISLLEEKGANEVVLKATG---RAINKTV 61 (273)
Q Consensus 17 ~~NeIrVt~k~~irnYV~yA~~LL~e~g~~eVvIkA~G---kAIsKAV 61 (273)
+.-.|=||.=+.-..+|..+.+.|++++++.+|+||.| +|+.+-|
T Consensus 185 ~kp~Ig~TmfGvTtp~v~~~~~~Le~~GyEvlVFHATG~GGraME~Li 232 (406)
T PRK02399 185 DKPLIGLTMFGVTTPCVQAAREELEARGYEVLVFHATGTGGRAMEKLI 232 (406)
T ss_pred CCceEEEecCCCcHHHHHHHHHHHHhCCCeEEEEcCCCCchHHHHHHH
Confidence 44467777766666999999999998899999999998 6777654
No 19
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=33.32 E-value=78 Score=31.15 Aligned_cols=12 Identities=25% Similarity=0.332 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHH
Q 024039 58 NKTVMIAELLKR 69 (273)
Q Consensus 58 sKAV~VAEILKr 69 (273)
..|-.+++.|+.
T Consensus 256 ~~~~~l~~~L~~ 267 (456)
T PRK10590 256 HGANHLAEQLNK 267 (456)
T ss_pred HHHHHHHHHHHH
Confidence 334455555544
No 20
>cd08982 GH43_3 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=32.47 E-value=47 Score=31.06 Aligned_cols=37 Identities=14% Similarity=0.273 Sum_probs=26.8
Q ss_pred eeeeeeEEEEEecc---cCCCCCCCcCCCCCCCCCccCCC
Q 024039 102 TRHVSAITITLSRK---ELDSSSLGYQPPVPTDQVKPLAD 138 (273)
Q Consensus 102 tR~VS~I~ItLSk~---~LD~~~pGYQ~Plp~~qvk~~~~ 138 (273)
.|.+-...|+-..+ .+++.-.+||.|||++++||+.+
T Consensus 248 ~R~~~i~pv~~~~dG~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (295)
T cd08982 248 ERRIGLFPAFFDEDGVLYCNTAFGDYPMILPDKKIDPPED 287 (295)
T ss_pred CceeEEEEEEECCCCcEEEcccCCcCcccCCCCCCccccc
Confidence 46665556665443 35776789999999999999854
No 21
>KOG3875 consensus Peroxisomal biogenesis protein peroxin [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.13 E-value=82 Score=31.09 Aligned_cols=16 Identities=31% Similarity=0.511 Sum_probs=11.4
Q ss_pred CccCCCCCCCCCCCCC
Q 024039 208 EYYNGYGGSGALPPQG 223 (273)
Q Consensus 208 g~~~~~~~~~~~p~~~ 223 (273)
|+||..++++..|++-
T Consensus 91 gGyN~~~~~g~np~sr 106 (362)
T KOG3875|consen 91 GGYNRFGPYGTNPESR 106 (362)
T ss_pred cccccccccccCcchh
Confidence 6688888777776543
No 22
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=31.99 E-value=1.3e+02 Score=30.39 Aligned_cols=46 Identities=28% Similarity=0.351 Sum_probs=38.7
Q ss_pred CCCCEEEEcCCCchHHHHHHHHHHHhhcCCCEEEEEEcc---hhHHHHH
Q 024039 16 ISENELRITAQGRLRNYISYAISLLEEKGANEVVLKATG---RAINKTV 61 (273)
Q Consensus 16 ~~~NeIrVt~k~~irnYV~yA~~LL~e~g~~eVvIkA~G---kAIsKAV 61 (273)
.+.-.|=||.=+.-...|..+.+.|++++++.+++||.| +|+.|-|
T Consensus 183 ~~kp~I~iTmfGvTTp~V~~~~~~Le~~G~Ev~VFHAtG~GG~aME~Li 231 (403)
T PF06792_consen 183 EDKPLIGITMFGVTTPCVDAIRERLEEEGYEVLVFHATGTGGRAMERLI 231 (403)
T ss_pred CCCcEEEEECCCCcHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHH
Confidence 345578888877778999999999998899999999998 6777655
No 23
>PRK05261 putative phosphoketolase; Provisional
Probab=31.76 E-value=65 Score=35.03 Aligned_cols=30 Identities=30% Similarity=0.418 Sum_probs=28.0
Q ss_pred CCEEEEEEcchhHHH-HHHHHHHHHHHhCCc
Q 024039 45 ANEVVLKATGRAINK-TVMIAELLKRRVVGL 74 (273)
Q Consensus 45 ~~eVvIkA~GkAIsK-AV~VAEILKrRi~GL 74 (273)
.+.|+|-|.|.-+.. |+..|++|++.+|++
T Consensus 613 ~pDvvL~atGsev~leAlaAa~~L~~~~pgi 643 (785)
T PRK05261 613 EPDVVLACAGDVPTLETLAAADLLREHFPDL 643 (785)
T ss_pred CCCEEEEEeCcHhhHHHHHHHHHHHhhCCCC
Confidence 358999999999999 999999999999987
No 24
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=29.99 E-value=1.4e+02 Score=23.74 Aligned_cols=26 Identities=19% Similarity=0.346 Sum_probs=24.2
Q ss_pred CCEEEEEEcchhHHHHHHHHHHHHHH
Q 024039 45 ANEVVLKATGRAINKTVMIAELLKRR 70 (273)
Q Consensus 45 ~~eVvIkA~GkAIsKAV~VAEILKrR 70 (273)
-+.|+|-++|..+..|+..|+.|+.+
T Consensus 9 g~di~iia~G~~~~~al~A~~~L~~~ 34 (124)
T PF02780_consen 9 GADITIIAYGSMVEEALEAAEELEEE 34 (124)
T ss_dssp SSSEEEEEETTHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeehHHHHHHHHHHHHHHHc
Confidence 47899999999999999999999988
No 25
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=27.48 E-value=1e+02 Score=32.22 Aligned_cols=9 Identities=44% Similarity=0.571 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 024039 60 TVMIAELLK 68 (273)
Q Consensus 60 AV~VAEILK 68 (273)
|..+++.|+
T Consensus 258 a~~l~~~L~ 266 (629)
T PRK11634 258 TLEVAEALE 266 (629)
T ss_pred HHHHHHHHH
Confidence 333444443
No 26
>KOG3428 consensus Small nuclear ribonucleoprotein SMD1 and related snRNPs [RNA processing and modification]
Probab=27.38 E-value=31 Score=28.82 Aligned_cols=10 Identities=40% Similarity=0.830 Sum_probs=3.9
Q ss_pred CCCccccccc
Q 024039 149 RDKGRRQARN 158 (273)
Q Consensus 149 rgrGrgrgrg 158 (273)
|+|+||+|||
T Consensus 96 rgrgrg~Grg 105 (109)
T KOG3428|consen 96 RGRGRGRGRG 105 (109)
T ss_pred cccccccccC
Confidence 3444443333
No 27
>TIGR00106 uncharacterized protein, MTH1187 family. This protein has been crystallized in both Methanobacterium thermoautotrophicum and yeast, but its function remains unknown. Both crystal structures showed sulfate ions bound at the interface of two dimers to form a tetramer.
Probab=25.86 E-value=1.3e+02 Score=24.12 Aligned_cols=33 Identities=27% Similarity=0.476 Sum_probs=26.8
Q ss_pred CCCchHHHHHHHHHHHhhcCCCEEEEEEcchhHH
Q 024039 25 AQGRLRNYISYAISLLEEKGANEVVLKATGRAIN 58 (273)
Q Consensus 25 ~k~~irnYV~yA~~LL~e~g~~eVvIkA~GkAIs 58 (273)
....+..||..|++.|++.+. ...+++||-.|.
T Consensus 13 ~~~s~s~yVa~~i~~l~~sGl-~y~~~pm~T~IE 45 (97)
T TIGR00106 13 VGASVSSYVAAAIEVLKESGL-KYELHPMGTLIE 45 (97)
T ss_pred CCCcHHHHHHHHHHHHHHcCC-CeEecCCccEEe
Confidence 345788999999999987665 788899987664
No 28
>PF02089 Palm_thioest: Palmitoyl protein thioesterase; InterPro: IPR002472 Neuronal ceroid lipofuscinoses (NCL) represent a group of encephalopathies that occur in 1 in 12,500 children. Mutations in the palmitoyl protein thioesterase gene causing infantile neuronal ceroid lipofuscinosis []. The most common mutation results in intracellular accumulation of the polypeptide and undetectable enzyme activity in the brain. Direct sequencing of cDNAs derived from brain RNA of INCL patients has shown a mis-sense transversion of A to T at nucleotide position 364, which results in substitution of Trp for Arg at position 122 in the protein - Arg 122 is immediately adjacent to a lipase consensus sequence that contains the putative active site Ser of PPT. The occurrence of this and two other independent mutations in the PPT gene strongly suggests that defects in this gene cause INCL.; GO: 0008474 palmitoyl-(protein) hydrolase activity, 0006464 protein modification process; PDB: 3GRO_B 1PJA_A 1EXW_A 1EH5_A 1EI9_A.
Probab=25.41 E-value=71 Score=30.53 Aligned_cols=41 Identities=22% Similarity=0.214 Sum_probs=23.2
Q ss_pred CCCEEEEEEcchhHH---HHHHHHHHHHHHhCCceeeeEEEEEEeeee
Q 024039 44 GANEVVLKATGRAIN---KTVMIAELLKRRVVGLHQNTSTGSIDITDV 88 (273)
Q Consensus 44 g~~eVvIkA~GkAIs---KAV~VAEILKrRi~GLhQ~t~Issv~I~De 88 (273)
..+.|++||||-... -.-.+.++|++.+||.+ +.++++.+.
T Consensus 5 ~~PvViwHGmGD~~~~~~~m~~i~~~i~~~~PG~y----V~si~ig~~ 48 (279)
T PF02089_consen 5 PLPVVIWHGMGDSCCNPSSMGSIKELIEEQHPGTY----VHSIEIGND 48 (279)
T ss_dssp S--EEEE--TT--S--TTTHHHHHHHHHHHSTT------EEE--SSSS
T ss_pred CCcEEEEEcCccccCChhHHHHHHHHHHHhCCCce----EEEEEECCC
Confidence 357899999997653 35678899999999964 677777544
No 29
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]
Probab=25.36 E-value=73 Score=33.77 Aligned_cols=67 Identities=25% Similarity=0.372 Sum_probs=43.1
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHhhcCCCEEEEEEcchhHHHHHHHHHHHHHHhCCceeeeEEEEEEeeeeeeecc
Q 024039 17 SENELRITAQGRLRNYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRRVVGLHQNTSTGSIDITDVWEPLE 93 (273)
Q Consensus 17 ~~NeIrVt~k~~irnYV~yA~~LL~e~g~~eVvIkA~GkAIsKAV~VAEILKrRi~GLhQ~t~Issv~I~De~EP~e 93 (273)
+.|-+.++.... --|..+.-.|++ ..+.|+|-|.|.++..|+..||.|.++ +|+ +.-++. =.|+|++
T Consensus 480 r~~~~~~~~~~~--~~igkg~~vl~~-~~~dV~LiG~Gs~v~~cl~AA~~L~~~--gi~----vrVvd~-~~~kplD 546 (632)
T KOG0523|consen 480 RQNLPIYNNTEI--EEIGKGKYVLQE-VEPDVILIGTGSEVQECLEAAELLSED--GIK----VRVVDP-FTWKPLD 546 (632)
T ss_pred CccccccCCCch--hhhccccEEEec-CCCCEEEEeccHHHHHHHHHHHHHHhc--Cce----EEEecc-cceeecc
Confidence 344555554432 344455555665 448999999999999999999999965 442 222222 1577776
No 30
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=22.43 E-value=1.6e+02 Score=27.16 Aligned_cols=9 Identities=44% Similarity=0.826 Sum_probs=4.3
Q ss_pred CccccCCCC
Q 024039 190 RSFWGHGRR 198 (273)
Q Consensus 190 ~~~~g~grg 198 (273)
++++|++|+
T Consensus 205 gg~rgrgR~ 213 (215)
T KOG3262|consen 205 GGFRGRGRG 213 (215)
T ss_pred CCCCCCCCC
Confidence 344555554
No 31
>PTZ00034 40S ribosomal protein S10; Provisional
Probab=21.70 E-value=60 Score=27.73 Aligned_cols=10 Identities=20% Similarity=0.255 Sum_probs=4.3
Q ss_pred eeeccCCCcc
Q 024039 89 WEPLEEGLLP 98 (273)
Q Consensus 89 ~EP~eEGL~~ 98 (273)
|-=++||.+-
T Consensus 67 w~LT~eGiey 76 (124)
T PTZ00034 67 YYLTDEGIEY 76 (124)
T ss_pred EEEchHHHHH
Confidence 3334455433
No 32
>COG0290 InfC Translation initiation factor 3 (IF-3) [Translation, ribosomal structure and biogenesis]
Probab=20.46 E-value=4.9e+02 Score=23.57 Aligned_cols=58 Identities=17% Similarity=0.287 Sum_probs=41.6
Q ss_pred CCCEEEEcCC---CchHHHHHHHHHHHhhcCCCEEEEEEcchhHHHHHHHHHHHHHHhCCc
Q 024039 17 SENELRITAQ---GRLRNYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRRVVGL 74 (273)
Q Consensus 17 ~~NeIrVt~k---~~irnYV~yA~~LL~e~g~~eVvIkA~GkAIsKAV~VAEILKrRi~GL 74 (273)
.-.||+++.+ .++..=+..|...|++...-.|+|+-.|+.+...=--.++|.+-...|
T Consensus 89 ~vKEik~rp~Id~hD~~~K~k~~~rFLe~GdkVKvtirfrGRe~~h~elG~~~l~r~~~~~ 149 (176)
T COG0290 89 QVKEIKLRPKIDEHDYETKLKNARRFLEKGDKVKVTIRFRGREMAHQELGVKVLERVAEDL 149 (176)
T ss_pred EEEEEEeecCcCcchHHHHHHHHHHHHHCCCeEEEEEEEechhhhhHHHHHHHHHHHHHHh
Confidence 3457777755 445555677888888766778999999999988877777776655444
Done!